Your job contains 1 sequence.
>001977
MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNPNPNPNSNSNRT
PSPSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTPAAAKSYGEDVLRKRIRVYWPLDKAW
YEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWVQESVSLLKRLRRDSFKKVVVEDD
EEMENVEDEISDDRSDSSDDDWNKNVGKEDVSEDEEVDLVDEQENKVLRGRKRKSSGVKK
SKSDGNAVNADFKSPIIKPVKIFGSDKLSNGFDNPVMGDVSERFSAREADKFHFLGPDRR
DAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMD
AHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEK
GSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVD
VATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLV
PLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDS
GSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVF
ENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFA
LEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQ
ACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDM
DYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYEL
RSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAG
LTLILLDGSLLHAFLILQSNSCSSEMN
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001977
(987 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2132233 - symbol:MSH6 "AT4G02070" species:3702... 2496 7.3e-280 3
MGI|MGI:1343961 - symbol:Msh6 "mutS homolog 6 (E. coli)" ... 1072 1.9e-108 1
RGD|2322311 - symbol:Msh6 "mutS homolog 6 (E. coli)" spec... 1069 3.9e-108 1
UNIPROTKB|E1BWV7 - symbol:MSH6 "Uncharacterized protein" ... 1051 3.1e-106 1
UNIPROTKB|E1BYJ2 - symbol:MSH6 "Uncharacterized protein" ... 1051 3.1e-106 1
UNIPROTKB|F1PM27 - symbol:MSH6 "Uncharacterized protein" ... 941 1.4e-94 1
UNIPROTKB|J9P5H1 - symbol:MSH6 "Uncharacterized protein" ... 941 1.4e-94 1
UNIPROTKB|I3LUG7 - symbol:LOC100624532 "Uncharacterized p... 939 2.3e-94 1
UNIPROTKB|E1B9Q4 - symbol:MSH6 "Uncharacterized protein" ... 941 3.6e-94 1
UNIPROTKB|I3LHZ9 - symbol:LOC100739477 "Uncharacterized p... 939 4.2e-94 1
UNIPROTKB|B4DF41 - symbol:MSH6 "DNA mismatch repair prote... 929 2.7e-93 1
UNIPROTKB|F5H2F9 - symbol:MSH6 "DNA mismatch repair prote... 929 2.7e-93 1
UNIPROTKB|P52701 - symbol:MSH6 "DNA mismatch repair prote... 929 8.0e-93 1
FB|FBgn0036486 - symbol:Msh6 "Msh6" species:7227 "Drosoph... 817 2.7e-83 2
WB|WBGene00003422 - symbol:msh-6 species:6239 "Caenorhabd... 793 2.3e-78 1
UNIPROTKB|Q9N3T8 - symbol:msh-6 "Protein MSH-6" species:6... 793 2.3e-78 1
ZFIN|ZDB-GENE-020905-3 - symbol:msh6 "mutS homolog 6 (E. ... 755 7.5e-74 1
ASPGD|ASPL0000041666 - symbol:mshA species:162425 "Emeric... 358 1.6e-69 3
UNIPROTKB|Q5BCM2 - symbol:AN1708.2 "Protein required for ... 358 1.6e-69 3
DICTYBASE|DDB_G0268614 - symbol:msh6 "mutS homolog" speci... 397 5.8e-65 2
UNIPROTKB|Q7RKG5 - symbol:PY02936 "G/T mismatch binding p... 388 2.8e-64 2
SGD|S000002504 - symbol:MSH6 "Protein required for mismat... 378 8.3e-64 3
POMBASE|SPCC285.16c - symbol:msh6 "MutS protein homolog" ... 383 3.7e-62 3
UNIPROTKB|G4NEZ2 - symbol:MGG_00704 "DNA mismatch repair ... 344 1.1e-61 3
CGD|CAL0006305 - symbol:MSH6 species:5476 "Candida albica... 337 6.3e-61 3
UNIPROTKB|Q5VR41 - symbol:OJ1174_D05.15 "Os01g0180600 pro... 402 5.4e-51 4
TAIR|locus:1005716529 - symbol:MSH7 "AT3G24495" species:3... 413 1.1e-49 2
UNIPROTKB|Q7S4J6 - symbol:NCU08135 "DNA mismatch repair p... 377 1.2e-48 3
UNIPROTKB|Q23AD6 - symbol:TTHERM_00426230 "MutS domain II... 304 1.0e-46 3
UNIPROTKB|Q23K54 - symbol:TTHERM_00194810 "MutS domain II... 380 4.5e-42 2
UNIPROTKB|Q74ZT2 - symbol:AGOS_AGR116W "AGR116Wp" species... 345 2.5e-41 2
ZFIN|ZDB-GENE-060526-307 - symbol:msh3 "mutS homolog 3 (E... 297 3.1e-29 2
UNIPROTKB|F1RF09 - symbol:MSH3 "Uncharacterized protein" ... 294 1.9e-28 2
UNIPROTKB|P20585 - symbol:MSH3 "DNA mismatch repair prote... 302 3.6e-28 2
UNIPROTKB|F1MLH1 - symbol:MSH3 "Uncharacterized protein" ... 293 1.6e-27 2
UNIPROTKB|Q8TTB4 - symbol:mutS "DNA mismatch repair prote... 223 6.9e-26 3
UNIPROTKB|F1P9S9 - symbol:MSH3 "Uncharacterized protein" ... 276 9.6e-26 2
TIGR_CMR|APH_0857 - symbol:APH_0857 "DNA mismatch repair ... 185 2.2e-24 3
UNIPROTKB|F1LQM8 - symbol:Msh3 "Protein Msh3" species:101... 251 7.2e-23 2
TIGR_CMR|ECH_0824 - symbol:ECH_0824 "DNA mismatch repair ... 188 1.1e-22 3
MGI|MGI:109519 - symbol:Msh3 "mutS homolog 3 (E. coli)" s... 252 4.7e-22 2
UNIPROTKB|P74926 - symbol:mutS "DNA mismatch repair prote... 163 6.1e-22 3
CGD|CAL0000288 - symbol:orf19.3608 species:5476 "Candida ... 192 6.9e-22 2
UNIPROTKB|Q759V4 - symbol:MSH3 "DNA mismatch repair prote... 216 3.0e-21 2
UNIPROTKB|Q89VX1 - symbol:mutS "DNA mismatch repair prote... 224 5.1e-21 2
UNIPROTKB|A4R0R0 - symbol:MSH3 "DNA mismatch repair prote... 216 1.1e-20 2
TIGR_CMR|NSE_0335 - symbol:NSE_0335 "DNA mismatch repair ... 181 1.5e-20 3
TIGR_CMR|CBU_1056 - symbol:CBU_1056 "DNA mismatch repair ... 155 2.0e-20 3
UNIPROTKB|P61667 - symbol:mutS "DNA mismatch repair prote... 173 2.1e-20 3
TIGR_CMR|GSU_1822 - symbol:GSU_1822 "DNA mismatch repair ... 173 2.1e-20 3
UNIPROTKB|P49849 - symbol:mutS "DNA mismatch repair prote... 187 6.7e-20 2
TIGR_CMR|SPO_0011 - symbol:SPO_0011 "DNA mismatch repair ... 209 7.4e-20 2
SGD|S000000688 - symbol:MSH3 "Mismatch repair protein" sp... 206 9.1e-20 2
TAIR|locus:2131829 - symbol:MSH3 "AT4G25540" species:3702... 272 1.1e-19 1
UNIPROTKB|Q7NLT8 - symbol:mutS "DNA mismatch repair prote... 150 1.1e-19 4
UNIPROTKB|Q0J8X3 - symbol:Os04g0682900 "Os04g0682900 prot... 270 1.1e-19 1
UNIPROTKB|Q7SD11 - symbol:msh-3 "DNA mismatch repair prot... 141 4.5e-19 3
TIGR_CMR|DET_1219 - symbol:DET_1219 "DNA mismatch repair ... 181 7.8e-19 2
TIGR_CMR|CHY_1397 - symbol:CHY_1397 "DNA mismatch repair ... 192 1.0e-18 3
DICTYBASE|DDB_G0281683 - symbol:msh3 "mutS homolog" speci... 263 1.5e-18 1
UNIPROTKB|A9WFZ9 - symbol:mutS "DNA mismatch repair prote... 206 9.5e-18 2
UNIPROTKB|O66652 - symbol:mutS "DNA mismatch repair prote... 190 1.2e-17 3
TIGR_CMR|BA_3905 - symbol:BA_3905 "DNA mismatch repair pr... 177 4.3e-17 3
TIGR_CMR|SO_3431 - symbol:SO_3431 "DNA mismatch repair pr... 139 5.9e-17 3
UNIPROTKB|A6V1G8 - symbol:mutS "DNA mismatch repair prote... 155 4.9e-16 2
TIGR_CMR|VC_0535 - symbol:VC_0535 "DNA mismatch repair pr... 153 5.1e-16 2
UNIPROTKB|Q8F496 - symbol:mutS "DNA mismatch repair prote... 163 5.6e-16 3
POMBASE|SPAC8F11.03 - symbol:msh3 "MutS protein homolog 3... 166 1.1e-15 2
UNIPROTKB|Q0J1W5 - symbol:Os09g0407600 "Os09g0407600 prot... 200 7.7e-15 1
UNIPROTKB|P23909 - symbol:mutS species:83333 "Escherichia... 139 9.9e-15 2
ASPGD|ASPL0000012704 - symbol:AN3749 species:162425 "Emer... 162 1.4e-13 2
UNIPROTKB|Q5B6T1 - symbol:msh3 "DNA mismatch repair prote... 162 1.4e-13 2
UNIPROTKB|Q3KKQ0 - symbol:mutS "DNA mismatch repair prote... 143 2.2e-13 3
DICTYBASE|DDB_G0275999 - symbol:msh1 "mutS homolog" speci... 162 1.6e-12 3
SGD|S000001162 - symbol:MSH1 "DNA-binding protein involve... 137 1.8e-11 3
UNIPROTKB|F1M551 - symbol:Msh3 "Protein Msh3" species:101... 171 1.4e-09 1
UNIPROTKB|Q8A334 - symbol:mutS "DNA mismatch repair prote... 133 2.7e-09 3
UNIPROTKB|Q75D87 - symbol:AGOS_ABR137W "ABR137Wp" species... 122 7.8e-08 2
UNIPROTKB|O13396 - symbol:msh-2 "DNA mismatch repair prot... 159 1.4e-07 1
UNIPROTKB|H9L225 - symbol:H9L225 "Uncharacterized protein... 135 2.8e-07 1
ASPGD|ASPL0000073909 - symbol:AN10621 species:162425 "Eme... 162 1.5e-06 2
RGD|620786 - symbol:Msh2 "mutS homolog 2 (E. coli)" speci... 149 1.6e-06 1
UNIPROTKB|F1M0A4 - symbol:Msh3 "Protein Msh3" species:101... 130 2.1e-06 1
CGD|CAL0001526 - symbol:MSH2 species:5476 "Candida albica... 147 2.4e-06 1
WB|WBGene00003418 - symbol:msh-2 species:6239 "Caenorhabd... 146 3.0e-06 1
UNIPROTKB|Q9TXR4 - symbol:msh-2 "Protein MSH-2" species:6... 146 3.0e-06 1
UNIPROTKB|Q5B374 - symbol:AN5006.2 "Putative uncharacteri... 162 5.7e-06 2
UNIPROTKB|H9L226 - symbol:H9L226 "Uncharacterized protein... 138 7.1e-06 1
UNIPROTKB|F1NV33 - symbol:MSH2 "Uncharacterized protein" ... 129 1.0e-05 2
UNIPROTKB|F1NFH4 - symbol:MSH2 "Uncharacterized protein" ... 129 1.1e-05 2
MGI|MGI:101816 - symbol:Msh2 "mutS homolog 2 (E. coli)" s... 146 2.9e-05 2
UNIPROTKB|E1C1F8 - symbol:MSH3 "Uncharacterized protein" ... 134 3.7e-05 1
DICTYBASE|DDB_G0284747 - symbol:msh5 "mutS homolog" speci... 135 4.8e-05 1
UNIPROTKB|E9PHA6 - symbol:MSH2 "DNA mismatch repair prote... 135 5.1e-05 1
UNIPROTKB|P43246 - symbol:MSH2 "DNA mismatch repair prote... 135 5.2e-05 1
UNIPROTKB|Q3MHE4 - symbol:MSH2 "DNA mismatch repair prote... 143 7.5e-05 2
UNIPROTKB|F1PM37 - symbol:MSH2 "Uncharacterized protein" ... 138 0.00020 2
UNIPROTKB|Q6L4V0 - symbol:P0010D04.9 "Putative uncharacte... 128 0.00025 1
CGD|CAL0005874 - symbol:orf19.496 species:5476 "Candida a... 90 0.00027 2
TAIR|locus:2095097 - symbol:MSH2 "AT3G18524" species:3702... 128 0.00030 1
WARNING: Descriptions of 7 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2132233 [details] [associations]
symbol:MSH6 "AT4G02070" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006290 "pyrimidine dimer repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 InterPro:IPR002999
GO:GO:0005524 GO:GO:0009411 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003684 EMBL:AL161493 SMART:SM00333 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
GO:GO:0006290 EMBL:AF001308 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
EMBL:AF001535 EMBL:AJ245967 IPI:IPI00528681 PIR:T01508
RefSeq:NP_192116.1 UniGene:At.34340 ProteinModelPortal:O04716
SMR:O04716 STRING:O04716 PaxDb:O04716 PRIDE:O04716
EnsemblPlants:AT4G02070.1 GeneID:828147 KEGG:ath:AT4G02070
TAIR:At4g02070 HOGENOM:HOG000243127 InParanoid:O04716 KO:K08737
OMA:YHMDAVI PhylomeDB:O04716 ProtClustDB:CLSN2685718
ArrayExpress:O04716 Genevestigator:O04716 GermOnline:AT4G02070
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 Uniprot:O04716
Length = 1324
Score = 2496 (883.7 bits), Expect = 7.3e-280, Sum P(3) = 7.3e-280
Identities = 484/710 (68%), Positives = 572/710 (80%)
Query: 252 FKSPIIKPVKIFG-SDKLSNGF-DNPVMGDVSERFSAREADKFHFLGPDRRDAKRRRPGD 309
FK+ +++P K G +D++ G DN + GD RF AR+++KF FLG DRRDAKRRRP D
Sbjct: 302 FKASVVEPAKKIGQADRVVKGLEDNVLDGDALARFGARDSEKFRFLGVDRRDAKRRRPTD 361
Query: 310 VYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELD 369
YDPRTLYLPPDF++ L+ GQ+QWWEFK+KHMDKV+FFKMGKFYELFEMDAHVGAKELD
Sbjct: 362 ENYDPRTLYLPPDFVKKLTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELD 421
Query: 370 LQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKR 429
+QYMKGEQPHCGFPE+NFS+N+EKL RKGYRVLVVEQTETP+QLE RRKE GSKDKVVKR
Sbjct: 422 IQYMKGEQPHCGFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVKR 481
Query: 430 EICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILG 489
E+CAVVTKGTLT+GE+L NPDASYLMALTE +S + + + FG+C+VDVAT +IILG
Sbjct: 482 EVCAVVTKGTLTDGEMLLTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVATQKIILG 541
Query: 490 QVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAE 549
Q RPVEIIKPA +LS TER I+R TRNPLVN+LVPLSEFWD+E
Sbjct: 542 QFKDDQDCSALSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVPLSEFWDSE 601
Query: 550 TTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALG 609
T+ E+ IY RI + + S + GDG + LP +LSEL + +GS LSALG
Sbjct: 602 KTIYEVGIIYKRINCQPSSAYSSE---GKILGDGSSFLPKMLSELATEDKNGSLALSALG 658
Query: 610 GTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSS 669
G ++YL+++FLDE+LLRFAKFE LP F ++ +K +MVLDA ALENLE+FENSR+G S
Sbjct: 659 GAIYYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENSRNGGYS 718
Query: 670 GTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSR 729
GTLYAQLN C+TA GKRLL+TWLARPLYN+ LI+ERQDAVA LRG N P++LEFRK+LSR
Sbjct: 719 GTLYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEFRKSLSR 778
Query: 730 LPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAIL 789
LPDMERL+AR+F+S EA+GRN +KVVLYED AKKQ+QEFIS L GCE M +ACSSL AIL
Sbjct: 779 LPDMERLIARMFSSIEASGRNGDKVVLYEDTAKKQVQEFISTLRGCETMAEACSSLRAIL 838
Query: 790 ENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKV 849
++ SR+L H+LTPG+ LP I S +K+FKDAFDWVEA+NSGR+IPH G D +YD ACK V
Sbjct: 839 KHDTSRRLLHLLTPGQSLPNISSSIKYFKDAFDWVEAHNSGRVIPHEGADEEYDCACKTV 898
Query: 850 KEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFR 909
+E E+SL KHLKEQRKLLGD SI YVT+GKD YLLEVPESL GSVP DYEL SSKKG R
Sbjct: 899 EEFESSLKKHLKEQRKLLGDASINYVTVGKDEYLLEVPESLSGSVPHDYELCSSKKGVSR 958
Query: 910 YWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATA 959
YWTP IKKLL ELSQA+SEKESALKSI QRLIG+FCEH KWRQ+V+ATA
Sbjct: 959 YWTPTIKKLLKELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATA 1008
Score = 159 (61.0 bits), Expect = 7.3e-280, Sum P(3) = 7.3e-280
Identities = 36/94 (38%), Positives = 49/94 (52%)
Query: 78 KKSRLVIGQXXXXXXXXXXXXKSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLV 137
KK LVIGQ +YG++V+ K++RVYWPLDK WY+G V +DK KH+V
Sbjct: 100 KKPLLVIGQTPSPPQSVVI---TYGDEVVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVV 156
Query: 138 QYXXXXXXXXXXXXXXIEWV--QESVSLLKRLRR 169
+Y EWV ++S RL+R
Sbjct: 157 EYEDGEEESLDLGKEKTEWVVGEKSGDRFNRLKR 190
Score = 76 (31.8 bits), Expect = 7.3e-280, Sum P(3) = 7.3e-280
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 1 MAPGKRQNNGRSPLVNPQRQ 20
MAP +RQ +GRSPLVN QRQ
Sbjct: 1 MAPSRRQISGRSPLVNQQRQ 20
>MGI|MGI:1343961 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IGI;IMP] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IGI;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IMP] [GO:0009411
"response to UV" evidence=IMP] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=ISO;IDA] [GO:0043570 "maintenance of
DNA repeat elements" evidence=IBA] [GO:0045190 "isotype switching"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO;IMP] [GO:0051096 "positive regulation
of helicase activity" evidence=ISO] [GO:0097193 "intrinsic
apoptotic signaling pathway" evidence=IMP] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 MGI:MGI:1343961 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0003684 GO:GO:0043531 GO:GO:0003682
GO:GO:0000790 GO:GO:0045190 GO:GO:0007131 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0043570 GO:GO:0045910 SMART:SM00293
GO:GO:0008094 GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 HOGENOM:HOG000243127
KO:K08737 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 CTD:2956
GeneTree:ENSGT00550000075024 HOVERGEN:HBG000101 OrthoDB:EOG4CG07F
EMBL:U42190 EMBL:AF031087 EMBL:AF031085 EMBL:AF031086 EMBL:BC051160
EMBL:BC051634 EMBL:U61388 EMBL:U61389 IPI:IPI00323790
RefSeq:NP_034960.1 UniGene:Mm.18210 ProteinModelPortal:P54276
SMR:P54276 IntAct:P54276 STRING:P54276 PhosphoSite:P54276
PaxDb:P54276 PRIDE:P54276 Ensembl:ENSMUST00000005503 GeneID:17688
KEGG:mmu:17688 InParanoid:Q6GTK8 ChiTaRS:MSH6 NextBio:292264
Bgee:P54276 CleanEx:MM_MSH6 Genevestigator:P54276
GermOnline:ENSMUSG00000005370 Uniprot:P54276
Length = 1358
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 258/699 (36%), Positives = 378/699 (54%)
Query: 290 DKFHFLGPD-RRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFF 348
+ +L P+ RRD RRRP ++P TLY+P +FL + + G ++WW+ KS++ D VIF+
Sbjct: 367 ETLEWLKPEKRRDEHRRRPDHPEFNPTTLYVPEEFLNSCTPGMRKWWQLKSQNFDLVIFY 426
Query: 349 KMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTE 408
K+GKFYEL+ MDA +G EL L +MKG H GFPE F + L +KGY+V VEQTE
Sbjct: 427 KVGKFYELYHMDAVIGVSELGLIFMKGNWAHSGFPEIAFGRFSDSLVQKGYKVARVEQTE 486
Query: 409 TPEQLELRRKEKG--SK-DKVVKREICAVVTKGTLTEGELLSANPDASY---LMALTESN 462
TPE +E R ++ SK D+VV+REIC ++TKGT T +L +P +Y L++L E
Sbjct: 487 TPEMMEARCRKMAHVSKFDRVVRREICRIITKGTQTYS-VLDGDPSENYSRYLLSLKEKE 545
Query: 463 QSPASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPE 522
+ + + R +G+C VD + + +GQ PV+I+ LS E
Sbjct: 546 EETSGHT--RVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQILFEKGNLSTE 603
Query: 523 TERAILRHTRNPLVNDLVPLSEFWDAETTVLEI-KNIYNRITAESLNKADSNVANSQAEG 581
T+ + + L L+P S+FWDA T+ + + Y +S + +E
Sbjct: 604 TKTVLKGSLSSCLQEGLIPGSQFWDATKTLRTLLEGGYFTGNGDSSTVLPLVLKGMTSES 663
Query: 582 DGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFE-LLPCSGFGD 640
D + PG SEL LSALGG +FYLKK +D+ LL A FE P
Sbjct: 664 DSVGLTPGEESEL---------ALSALGGIVFYLKKCLIDQELLSMANFEEYFPLDSDTV 714
Query: 641 MAKKP---------YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTW 691
KP MVLDA L NLE+F N +G + GTL +L+ C T FGKRLL+ W
Sbjct: 715 STVKPGAVFTKASQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQW 774
Query: 692 LARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLF-ASSEANGRN 750
L PL + I +R DAV L V E L +LPD+ERLL+++ S +N
Sbjct: 775 LCAPLCSPSAISDRLDAVEDLMAVPDKVT-EVADLLKKLPDLERLLSKIHNVGSPLKSQN 833
Query: 751 --SNKVVLYEDA--AKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILT---- 802
++ ++YE+ +KK++ +F+SAL G ++M + L + S+ L ++T
Sbjct: 834 HPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKVSGLLEEVAGGFTSKTLKQVVTLQSK 893
Query: 803 PGKG-LPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLK 861
KG P + + L+ + AFD +A +G I P G D DYD A ++E E SL ++L
Sbjct: 894 SPKGRFPDLTAELQRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLD 953
Query: 862 EQRKLLGDTSITYVTIGKDLYLLEVPESLRG-SVPRDYELRSSKKGFFRYWTPNIKKLLG 920
+QR LG SI Y IG++ Y LE+PE+ ++P +YEL+S+KKG RYWT I+K L
Sbjct: 954 KQRSRLGCKSIVYWGIGRNRYQLEIPENFATRNLPEEYELKSTKKGCKRYWTKTIEKKLA 1013
Query: 921 ELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATA 959
L AE ++++LK ++RL F ++H W+ V A
Sbjct: 1014 NLINAEERRDTSLKDCMRRLFCNFDKNHKDWQSAVECIA 1052
>RGD|2322311 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0008340 "determination of adult lifespan"
evidence=ISO] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISO] [GO:0030983 "mismatched
DNA binding" evidence=IEA;ISO] [GO:0032137 "guanine/thymine mispair
binding" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=ISO] [GO:0045190 "isotype switching" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] [GO:0097193 "intrinsic apoptotic signaling
pathway" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043570 "maintenance of DNA repeat
elements" evidence=ISO] [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0032142 "single guanine insertion binding" evidence=ISO]
[GO:0032143 "single thymine insertion binding" evidence=ISO]
[GO:0032357 "oxidized purine DNA binding" evidence=ISO] [GO:0032405
"MutLalpha complex binding" evidence=ISO] [GO:0043531 "ADP binding"
evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 RGD:2322311 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0000287 GO:GO:0043531
GO:GO:0003682 GO:GO:0016887 GO:GO:0006298 GO:GO:0000790
GO:GO:0045190 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 EMBL:CH473947 GO:GO:0016446 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 OrthoDB:EOG4CG07F IPI:IPI00369351
RefSeq:XP_002726765.1 RefSeq:XP_002729643.2
Ensembl:ENSRNOT00000021923 GeneID:100360342 KEGG:rno:100360342
UCSC:RGD:2322311 Uniprot:D4A0U9
Length = 1361
Score = 1069 (381.4 bits), Expect = 3.9e-108, P = 3.9e-108
Identities = 264/704 (37%), Positives = 384/704 (54%)
Query: 290 DKFHFLGPD-RRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFF 348
+ +L P+ RRD RRRP Y+ TLY+P DFL + + G ++WW+FKS++ D VIF+
Sbjct: 370 ETLEWLKPEKRRDENRRRPDHPDYNSSTLYVPEDFLNSCTPGMRRWWQFKSQNFDLVIFY 429
Query: 349 KMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTE 408
K+GKFYEL+ MDA +G EL L +MKG H GFPE F + L +KGY+V VEQTE
Sbjct: 430 KVGKFYELYHMDAVIGVSELGLIFMKGNWAHSGFPEIAFGRFSDSLVQKGYKVARVEQTE 489
Query: 409 TPEQLELRRKEKG--SK-DKVVKREICAVVTKGTLTEGELLSANPDASY---LMALTESN 462
TPE +E R ++ SK D+VV+REIC ++TKGT T +L +P +Y L++L E
Sbjct: 490 TPEMMEARCRKMAHVSKFDRVVRREICRIITKGTQTYS-VLDGDPSENYSRYLLSLKEKE 548
Query: 463 QSPASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPE 522
+ + R +G+C VD + + LGQ PV+I+ LS E
Sbjct: 549 EDSSGHM--RAYGVCFVDTSLGKFFLGQFSDDRHCSRLRTLVAHYPPVQILFEKGNLSTE 606
Query: 523 TERAILRHTRNPLVNDLVPLSEFWDAETTVLEI-KNIY---NRITAESLNKADSNVANSQ 578
T+ + + L L+P S+FWDA T+ + + Y N + L S+
Sbjct: 607 TKTVLKGSLSSCLQEGLIPGSQFWDATKTLRTLLEGGYFTGNEGSGAELPPV-LKAMTSE 665
Query: 579 AEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFE-LLPCSG 637
++ GLT PG SEL LSALGG +FYLKK +D+ LL A FE P
Sbjct: 666 SDSVGLT--PGEESELS---------LSALGGCVFYLKKCLIDQELLSMANFEEYFPLDS 714
Query: 638 FGDMAK--KP---------YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKR 686
DM KP MVLDA L NLE+F N +G + GTL +L+ C T FGKR
Sbjct: 715 --DMVGTVKPGAVFTKASQRMVLDAVTLSNLEIFLNGTNGSTEGTLLERLDTCHTPFGKR 772
Query: 687 LLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLF-ASSE 745
LL+ WL PL + I +R DA+ L V A E L +LPD+ERLL+++ S
Sbjct: 773 LLKQWLCAPLCSPSAISDRLDAIEDLMAVPDKVA-EVADLLKKLPDLERLLSKIHNVGSP 831
Query: 746 ANGRN--SNKVVLYEDA--AKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHIL 801
+N + ++YE+ +KK++ +F+SAL G ++M + + + + +S+ L ++
Sbjct: 832 LKSQNHPDTRAIMYEETTYSKKKIIDFLSALEGFKVMCKITRLMEDVADGFKSKTLKQVV 891
Query: 802 T----PGKG-LPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASL 856
T KG P + + L + AFD +A +G I P G D DYD A ++E E SL
Sbjct: 892 TLQTKSPKGRFPDLTAELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSL 951
Query: 857 TKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRG-SVPRDYELRSSKKGFFRYWTPNI 915
++L +QR +G +I Y IG++ Y LE+PE+ ++P +YEL+S+KKG RYWT I
Sbjct: 952 LEYLDKQRSRIGCRNIVYWGIGRNRYQLEIPENFATRNLPEEYELKSTKKGCKRYWTKVI 1011
Query: 916 KKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATA 959
+K L L AE ++++LK ++RL F ++H W+ V TA
Sbjct: 1012 EKKLSNLINAEERRDASLKDCMRRLFYNFDKNHKDWQSAVECTA 1055
>UNIPROTKB|E1BWV7 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000400 "four-way
junction DNA binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0032143 "single thymine insertion binding" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032405 "MutLalpha complex
binding" evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] [GO:0051096
"positive regulation of helicase activity" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0000287
GO:GO:0043531 GO:GO:0003682 GO:GO:0016887 GO:GO:0006298
GO:GO:0000790 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00571940
Ensembl:ENSGALT00000014567 ArrayExpress:E1BWV7 Uniprot:E1BWV7
Length = 1357
Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
Identities = 256/708 (36%), Positives = 383/708 (54%)
Query: 284 FSAREADKFHFLGPDRR-DAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHM 342
F+A E +K +L ++ DA RRR YDP TLY+P D+L + G ++WW+ KS++
Sbjct: 361 FAAWEHEKLEWLQEGKKKDAHRRRQNHPDYDPCTLYVPEDYLNKCTPGMRRWWQLKSQNF 420
Query: 343 DKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVL 402
D VI +K+GKFYEL+ MDA G EL L +MKG H GFPE F L +KGY++
Sbjct: 421 DAVICYKVGKFYELYHMDAVTGVNELGLIFMKGSWAHSGFPETAFGRFSAILVQKGYKIA 480
Query: 403 VVEQTETPEQLELRRKEKG--SK-DKVVKREICAVVTKGTLTEGELLSANPDAS---YLM 456
VEQTETPE +E R K +K DKVV+REIC ++TKGT T ++ +P + YL+
Sbjct: 481 RVEQTETPEMMEARCKATAHTTKFDKVVRREICRIITKGTQTYS-IIDCDPTENHNKYLL 539
Query: 457 ALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPA 516
+ E S S R +G+C VD + + +GQ PV+++
Sbjct: 540 CVKEKEDS----SGQRVYGVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLFEK 595
Query: 517 NMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTV---LEIKNIYNRITAESLNKADSN 573
L+ +T++ + + + L+ S+FW A T+ LE + ES S
Sbjct: 596 GNLTVDTQKILKGSLISCIQEGLISGSQFWSASKTLKVLLEEEYFKENQNTESGCVLPSV 655
Query: 574 VANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFE-L 632
+ + +E D L PG SEL LSALGG +FYLKK +D+ LL A FE
Sbjct: 656 IKSLTSESDSLGLTPGENSEL---------ALSALGGIVFYLKKCLIDQELLSLANFEKY 706
Query: 633 LPC--------SGFGDMAKKPY-MVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAF 683
+P S A+ MVLD L NLEV +N +G + GTL +++ C T F
Sbjct: 707 IPVDADNAKTVSSSNFFARTDRRMVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPF 766
Query: 684 GKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFAL-EFRKALSRLPDMERLLARLFA 742
GKRLL+ WL PL N I +R DAV L V P L E + L +LPD+ERLL+++ +
Sbjct: 767 GKRLLKQWLCAPLCNPTSINDRLDAVEDLLAV--PAKLTEITEHLKKLPDLERLLSKIHS 824
Query: 743 -SSEANGRN--SNKVVLYEDA--AKKQLQEFISALHGCELMDQACSSLGAILENTESRQL 797
S +N ++ + YE+ +KK++ +F+SAL G ++M++ ++ + + +S+ L
Sbjct: 825 IGSPLKSQNHPDSRAIFYEEIKYSKKKIADFLSALEGFKVMNEIVDAMEEVASDFKSQVL 884
Query: 798 HHILT-----PGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEI 852
++T P P + + LK + AFD +A +G I P G D DYD A + +K +
Sbjct: 885 KQLVTRKAKHPDGRFPDLSAELKRWDTAFDHNQARKTGVITPKAGFDPDYDKALQDIKTV 944
Query: 853 EASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRG-SVPRDYELRSSKKGFFRYW 911
E +L +QRKLLG S+ Y GK+ Y +E+PE+ ++P +YEL+S++KG+ RYW
Sbjct: 945 EEDFRTYLDKQRKLLGLKSVLYWGTGKNRYQMEIPETATSRNLPEEYELKSTRKGYKRYW 1004
Query: 912 TPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATA 959
T I+K+L EL AE +++ALK ++RL F ++ W+ V A
Sbjct: 1005 TKEIEKMLAELINAEERRDAALKDCMRRLFYNFDKNSQDWQTAVQCIA 1052
>UNIPROTKB|E1BYJ2 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00822608
Ensembl:ENSGALT00000039625 ArrayExpress:E1BYJ2 Uniprot:E1BYJ2
Length = 1341
Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
Identities = 256/708 (36%), Positives = 383/708 (54%)
Query: 284 FSAREADKFHFLGPDRR-DAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHM 342
F+A E +K +L ++ DA RRR YDP TLY+P D+L + G ++WW+ KS++
Sbjct: 345 FAAWEHEKLEWLQEGKKKDAHRRRQNHPDYDPCTLYVPEDYLNKCTPGMRRWWQLKSQNF 404
Query: 343 DKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVL 402
D VI +K+GKFYEL+ MDA G EL L +MKG H GFPE F L +KGY++
Sbjct: 405 DAVICYKVGKFYELYHMDAVTGVNELGLIFMKGSWAHSGFPETAFGRFSAILVQKGYKIA 464
Query: 403 VVEQTETPEQLELRRKEKG--SK-DKVVKREICAVVTKGTLTEGELLSANPDAS---YLM 456
VEQTETPE +E R K +K DKVV+REIC ++TKGT T ++ +P + YL+
Sbjct: 465 RVEQTETPEMMEARCKATAHTTKFDKVVRREICRIITKGTQTYS-IIDCDPTENHNKYLL 523
Query: 457 ALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPA 516
+ E S S R +G+C VD + + +GQ PV+++
Sbjct: 524 CVKEKEDS----SGQRVYGVCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLFEK 579
Query: 517 NMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTV---LEIKNIYNRITAESLNKADSN 573
L+ +T++ + + + L+ S+FW A T+ LE + ES S
Sbjct: 580 GNLTVDTQKILKGSLISCIQEGLISGSQFWSASKTLKVLLEEEYFKENQNTESGCVLPSV 639
Query: 574 VANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFE-L 632
+ + +E D L PG SEL LSALGG +FYLKK +D+ LL A FE
Sbjct: 640 IKSLTSESDSLGLTPGENSEL---------ALSALGGIVFYLKKCLIDQELLSLANFEKY 690
Query: 633 LPC--------SGFGDMAKKPY-MVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAF 683
+P S A+ MVLD L NLEV +N +G + GTL +++ C T F
Sbjct: 691 IPVDADNAKTVSSSNFFARTDRRMVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPF 750
Query: 684 GKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFAL-EFRKALSRLPDMERLLARLFA 742
GKRLL+ WL PL N I +R DAV L V P L E + L +LPD+ERLL+++ +
Sbjct: 751 GKRLLKQWLCAPLCNPTSINDRLDAVEDLLAV--PAKLTEITEHLKKLPDLERLLSKIHS 808
Query: 743 -SSEANGRN--SNKVVLYEDA--AKKQLQEFISALHGCELMDQACSSLGAILENTESRQL 797
S +N ++ + YE+ +KK++ +F+SAL G ++M++ ++ + + +S+ L
Sbjct: 809 IGSPLKSQNHPDSRAIFYEEIKYSKKKIADFLSALEGFKVMNEIVDAMEEVASDFKSQVL 868
Query: 798 HHILT-----PGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEI 852
++T P P + + LK + AFD +A +G I P G D DYD A + +K +
Sbjct: 869 KQLVTRKAKHPDGRFPDLSAELKRWDTAFDHNQARKTGVITPKAGFDPDYDKALQDIKTV 928
Query: 853 EASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRG-SVPRDYELRSSKKGFFRYW 911
E +L +QRKLLG S+ Y GK+ Y +E+PE+ ++P +YEL+S++KG+ RYW
Sbjct: 929 EEDFRTYLDKQRKLLGLKSVLYWGTGKNRYQMEIPETATSRNLPEEYELKSTRKGYKRYW 988
Query: 912 TPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATA 959
T I+K+L EL AE +++ALK ++RL F ++ W+ V A
Sbjct: 989 TKEIEKMLAELINAEERRDAALKDCMRRLFYNFDKNSQDWQTAVQCIA 1036
>UNIPROTKB|F1PM27 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 Pfam:PF00855 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812
SMART:SM00293 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000004197 Uniprot:F1PM27
Length = 1263
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 224/617 (36%), Positives = 337/617 (54%)
Query: 299 RRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFE 358
RRD RRRP +D TLY+P DFL + + G ++WW+ KS++ D +IF+K+GKFYEL+
Sbjct: 306 RRDLHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLIIFYKVGKFYELYH 365
Query: 359 MDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRK 418
MDA G EL L +MKG H GFPE F + L +KGY+V VEQTETPE +E R +
Sbjct: 366 MDALTGVNELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCR 425
Query: 419 EKG--SK-DKVVKREICAVVTKGTLTEGELLSANPD---ASYLMALTESNQSPASQSTDR 472
+ SK D+VV+REIC V+TKGT T +L +P + YL++L E + + + R
Sbjct: 426 KMAHISKYDRVVRREICRVITKGTQTYS-VLEGDPSENYSKYLLSLKEKEEDSSGHT--R 482
Query: 473 CFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTR 532
+G+C VD + + +GQ PV+++ LS ET+ +
Sbjct: 483 VYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSTETKMILKGSLS 542
Query: 533 NPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILS 592
+ L L+P S+FWDA T+ + + E LN+ DS V Q G+T L
Sbjct: 543 SSLQEGLIPGSQFWDAAKTLRTL--LEEEYFKEKLNE-DSGVMLPQVL-KGMTSESDSLG 598
Query: 593 ELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFE-LLPCSGFGDMAKKP------ 645
++ G+ LSALGG +FYLKK +D+ LL A FE +P A +P
Sbjct: 599 --LTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYVPLDSDVVSATRPGAVFAK 656
Query: 646 ---YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLI 702
MVLDA L NLE+F N +G + GTL +++ C T FGKRLL+ WL PL + I
Sbjct: 657 ANQRMVLDAVTLSNLEIFMNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLCSPYAI 716
Query: 703 RERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLF-ASSEANGRN--SNKVVLYED 759
+R DA+ L V + + L +LPD+ERLL+++ S +N ++ ++YE+
Sbjct: 717 NDRLDAIEDLMVVPDKIS-DVADLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEE 775
Query: 760 A--AKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILT-----PGKGLPAIVS 812
+KK++ +F+SAL G +++ + + +++N +S+ L ++T P P +
Sbjct: 776 TTYSKKKIIDFLSALEGFKVICKIIEIMEEVVDNFKSKILKQVITLQTKNPEGRFPDLTV 835
Query: 813 ILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSI 872
L + AFD +A +G I P G D DYD A ++E E SL ++L++QR +G +I
Sbjct: 836 ELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTI 895
Query: 873 TYVTIGKDLYLLEVPES 889
Y IG++ Y LE+PE+
Sbjct: 896 VYWGIGRNRYQLEIPEN 912
Score = 677 (243.4 bits), Expect = 1.4e-65, P = 1.4e-65
Identities = 190/610 (31%), Positives = 308/610 (50%)
Query: 378 PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSK-DKVVKREICAVVT 436
P F + S+ V+K K RV E E E R+ SK D+VV+REIC V+T
Sbjct: 390 PEIAFGRYSDSL-VQK-GYKVARVEQTETPEMMEA-RCRKMAHISKYDRVVRREICRVIT 446
Query: 437 KGTLTEGELLSANPD---ASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMX 493
KGT T +L +P + YL++L E + + + R +G+C VD + + +GQ
Sbjct: 447 KGTQTYS-VLEGDPSENYSKYLLSLKEKEEDSSGHT--RVYGVCFVDTSLGKFFIGQFSD 503
Query: 494 XXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDA-ET-- 550
PV+++ LS ET+ + + L L+P S+FWDA +T
Sbjct: 504 DRHCSRFRTLVAHYPPVQVLFEKGNLSTETKMILKGSLSSSLQEGLIPGSQFWDAAKTLR 563
Query: 551 TVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSG--------- 601
T+LE + ++ +S + +E D L PG SEL + G
Sbjct: 564 TLLEEEYFKEKLNEDSGVMLPQVLKGMTSESDSLGLTPGEKSELALSALGGCVFYLKKCL 623
Query: 602 -SQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVF 660
Q L ++ Y+ LD ++ + P + F ++ MVLDA L NLE+F
Sbjct: 624 IDQELLSMANFEEYVP---LDSDVVSATR----PGAVFAKANQR--MVLDAVTLSNLEIF 674
Query: 661 ENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFA 720
N +G + GTL +++ C T FGKRLL+ WL PL + I +R DA+ L V +
Sbjct: 675 MNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLCSPYAINDRLDAIEDLMVVPDKIS 734
Query: 721 LEFRKALSRLPDMERLLARLF-ASSEANGRN--SNKVVLYEDA--AKKQLQEFISALHGC 775
+ L +LPD+ERLL+++ S +N ++ ++YE+ +KK++ +F+SAL G
Sbjct: 735 -DVADLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGF 793
Query: 776 ELMDQACSSLGAILENTESRQLHHILT-----PGKGLPAIVSILKHFKDAFDWVEANNSG 830
+++ + + +++N +S+ L ++T P P + L + AFD +A +G
Sbjct: 794 KVICKIIEIMEEVVDNFKSKILKQVITLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTG 853
Query: 831 RIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPES- 889
I P G D DYD A ++E E SL ++L++QR +G +I Y IG++ Y LE+PE+
Sbjct: 854 LITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTIVYWGIGRNRYQLEIPENF 913
Query: 890 LRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHN 949
+ ++P +YEL+S+KKG RYWT I+K L L AE ++ +LK ++RL F +++
Sbjct: 914 ITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYK 973
Query: 950 KWRQMVAATA 959
W+ V A
Sbjct: 974 DWQSAVECIA 983
>UNIPROTKB|J9P5H1 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533 SMART:SM00534
Pfam:PF00855 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000043509 Uniprot:J9P5H1
Length = 1279
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 224/617 (36%), Positives = 337/617 (54%)
Query: 299 RRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFE 358
RRD RRRP +D TLY+P DFL + + G ++WW+ KS++ D +IF+K+GKFYEL+
Sbjct: 296 RRDLHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLIIFYKVGKFYELYH 355
Query: 359 MDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRK 418
MDA G EL L +MKG H GFPE F + L +KGY+V VEQTETPE +E R +
Sbjct: 356 MDALTGVNELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCR 415
Query: 419 EKG--SK-DKVVKREICAVVTKGTLTEGELLSANPD---ASYLMALTESNQSPASQSTDR 472
+ SK D+VV+REIC V+TKGT T +L +P + YL++L E + + + R
Sbjct: 416 KMAHISKYDRVVRREICRVITKGTQTYS-VLEGDPSENYSKYLLSLKEKEEDSSGHT--R 472
Query: 473 CFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTR 532
+G+C VD + + +GQ PV+++ LS ET+ +
Sbjct: 473 VYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSTETKMILKGSLS 532
Query: 533 NPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILS 592
+ L L+P S+FWDA T+ + + E LN+ DS V Q G+T L
Sbjct: 533 SSLQEGLIPGSQFWDAAKTLRTL--LEEEYFKEKLNE-DSGVMLPQVL-KGMTSESDSLG 588
Query: 593 ELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFE-LLPCSGFGDMAKKP------ 645
++ G+ LSALGG +FYLKK +D+ LL A FE +P A +P
Sbjct: 589 --LTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYVPLDSDVVSATRPGAVFAK 646
Query: 646 ---YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLI 702
MVLDA L NLE+F N +G + GTL +++ C T FGKRLL+ WL PL + I
Sbjct: 647 ANQRMVLDAVTLSNLEIFMNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLCSPYAI 706
Query: 703 RERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLF-ASSEANGRN--SNKVVLYED 759
+R DA+ L V + + L +LPD+ERLL+++ S +N ++ ++YE+
Sbjct: 707 NDRLDAIEDLMVVPDKIS-DVADLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEE 765
Query: 760 A--AKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILT-----PGKGLPAIVS 812
+KK++ +F+SAL G +++ + + +++N +S+ L ++T P P +
Sbjct: 766 TTYSKKKIIDFLSALEGFKVICKIIEIMEEVVDNFKSKILKQVITLQTKNPEGRFPDLTV 825
Query: 813 ILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSI 872
L + AFD +A +G I P G D DYD A ++E E SL ++L++QR +G +I
Sbjct: 826 ELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTI 885
Query: 873 TYVTIGKDLYLLEVPES 889
Y IG++ Y LE+PE+
Sbjct: 886 VYWGIGRNRYQLEIPEN 902
Score = 677 (243.4 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 190/610 (31%), Positives = 308/610 (50%)
Query: 378 PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSK-DKVVKREICAVVT 436
P F + S+ V+K K RV E E E R+ SK D+VV+REIC V+T
Sbjct: 380 PEIAFGRYSDSL-VQK-GYKVARVEQTETPEMMEA-RCRKMAHISKYDRVVRREICRVIT 436
Query: 437 KGTLTEGELLSANPD---ASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMX 493
KGT T +L +P + YL++L E + + + R +G+C VD + + +GQ
Sbjct: 437 KGTQTYS-VLEGDPSENYSKYLLSLKEKEEDSSGHT--RVYGVCFVDTSLGKFFIGQFSD 493
Query: 494 XXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDA-ET-- 550
PV+++ LS ET+ + + L L+P S+FWDA +T
Sbjct: 494 DRHCSRFRTLVAHYPPVQVLFEKGNLSTETKMILKGSLSSSLQEGLIPGSQFWDAAKTLR 553
Query: 551 TVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSG--------- 601
T+LE + ++ +S + +E D L PG SEL + G
Sbjct: 554 TLLEEEYFKEKLNEDSGVMLPQVLKGMTSESDSLGLTPGEKSELALSALGGCVFYLKKCL 613
Query: 602 -SQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVF 660
Q L ++ Y+ LD ++ + P + F ++ MVLDA L NLE+F
Sbjct: 614 IDQELLSMANFEEYVP---LDSDVVSATR----PGAVFAKANQR--MVLDAVTLSNLEIF 664
Query: 661 ENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFA 720
N +G + GTL +++ C T FGKRLL+ WL PL + I +R DA+ L V +
Sbjct: 665 MNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLCSPYAINDRLDAIEDLMVVPDKIS 724
Query: 721 LEFRKALSRLPDMERLLARLF-ASSEANGRN--SNKVVLYEDA--AKKQLQEFISALHGC 775
+ L +LPD+ERLL+++ S +N ++ ++YE+ +KK++ +F+SAL G
Sbjct: 725 -DVADLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGF 783
Query: 776 ELMDQACSSLGAILENTESRQLHHILT-----PGKGLPAIVSILKHFKDAFDWVEANNSG 830
+++ + + +++N +S+ L ++T P P + L + AFD +A +G
Sbjct: 784 KVICKIIEIMEEVVDNFKSKILKQVITLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTG 843
Query: 831 RIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPES- 889
I P G D DYD A ++E E SL ++L++QR +G +I Y IG++ Y LE+PE+
Sbjct: 844 LITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTIVYWGIGRNRYQLEIPENF 903
Query: 890 LRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHN 949
+ ++P +YEL+S+KKG RYWT I+K L L AE ++ +LK ++RL F +++
Sbjct: 904 ITRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYK 963
Query: 950 KWRQMVAATA 959
W+ V A
Sbjct: 964 DWQSAVECIA 973
>UNIPROTKB|I3LUG7 [details] [associations]
symbol:LOC100624532 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 SMART:SM00533 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR015536 PANTHER:PTHR11361:SF31
GeneTree:ENSGT00550000075024 EMBL:FP700151
Ensembl:ENSSSCT00000028816 OMA:DDNPARG Uniprot:I3LUG7
Length = 1011
Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
Identities = 225/617 (36%), Positives = 337/617 (54%)
Query: 299 RRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFE 358
RRD RRRP +D TLY+P DFL + + G ++WW+ KS++ D VIF+K+GKFYEL+
Sbjct: 228 RRDVHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKVGKFYELYH 287
Query: 359 MDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRK 418
MDA +G EL L +MKG H GFPE F + L +KGY+V VEQTETPE +E R +
Sbjct: 288 MDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCR 347
Query: 419 EKG--SK-DKVVKREICAVVTKGTLTEGELLSANPD---ASYLMALTESNQSPASQSTDR 472
+ SK D+VV+REIC V+TKGT T +L +P + YL++L E + + R
Sbjct: 348 KMAHISKYDRVVRREICRVITKGTQTYS-VLEGDPSENYSKYLLSLKEKEDDSSGHT--R 404
Query: 473 CFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTR 532
+G+C VD + + +GQ PV+++ LS ET+ +
Sbjct: 405 VYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGSLSTETKMILKGSLS 464
Query: 533 NPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILS 592
+ L L+P S+FWDA T+ + + + LN+ DS V Q G+T +
Sbjct: 465 SSLQEGLIPGSQFWDAGKTLRTL--LEEGYFTDKLNE-DSGVMLPQVL-KGMTSESDSIG 520
Query: 593 ELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFE-LLPCSGFGDMAKKP------ 645
++ G+ LSALGG +FYLKK +D+ LL A FE +P A +P
Sbjct: 521 --LTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDVVSASRPGAVFAK 578
Query: 646 ---YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLI 702
MVLDA L NLE+F N+ +G GTL +++ C T FGKRLL+ WL PL N I
Sbjct: 579 ANQRMVLDAVTLNNLEIFLNATNGSPEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPYAI 638
Query: 703 RERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLF-ASSEANGRN--SNKVVLYED 759
+R DA+ L V + E L +LPD+ERLL+++ S +N ++ ++YE+
Sbjct: 639 SDRLDAIEDLMVVPDKIS-EVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEE 697
Query: 760 A--AKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILT-----PGKGLPAIVS 812
+KK++ +F+SAL G +++ + + ++++ +S+ L +LT P P +
Sbjct: 698 TTYSKKKIIDFLSALEGFKVICKIRGIMEEVIDDFKSKILKQVLTLQTKNPEGRFPDLTV 757
Query: 813 ILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSI 872
L + AFD +A +G I P G D DYD A ++E E SL ++L++QR +G +I
Sbjct: 758 ELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTI 817
Query: 873 TYVTIGKDLYLLEVPES 889
Y IG++ Y LE+PE+
Sbjct: 818 VYWGIGRNRYQLEIPEN 834
Score = 670 (240.9 bits), Expect = 2.3e-65, P = 2.3e-65
Identities = 191/610 (31%), Positives = 307/610 (50%)
Query: 378 PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSK-DKVVKREICAVVT 436
P F + S+ V+K K RV E E E R+ SK D+VV+REIC V+T
Sbjct: 312 PEIAFGRYSDSL-VQK-GYKVARVEQTETPEMMEA-RCRKMAHISKYDRVVRREICRVIT 368
Query: 437 KGTLTEGELLSANPD---ASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMX 493
KGT T +L +P + YL++L E + + R +G+C VD + + +GQ
Sbjct: 369 KGTQTYS-VLEGDPSENYSKYLLSLKEKEDDSSGHT--RVYGVCFVDTSLGKFFIGQFSD 425
Query: 494 XXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDA-ET-- 550
PV+++ LS ET+ + + L L+P S+FWDA +T
Sbjct: 426 DRHCSRFRTLVAHYPPVQVLFEKGSLSTETKMILKGSLSSSLQEGLIPGSQFWDAGKTLR 485
Query: 551 TVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSG--------- 601
T+LE +++ +S + +E D + PG SEL + G
Sbjct: 486 TLLEEGYFTDKLNEDSGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCL 545
Query: 602 -SQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVF 660
Q L ++ Y+ LD ++ ++ P + F ++ MVLDA L NLE+F
Sbjct: 546 IDQELLSMANFEEYIP---LDSDVVSASR----PGAVFAKANQR--MVLDAVTLNNLEIF 596
Query: 661 ENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFA 720
N+ +G GTL +++ C T FGKRLL+ WL PL N I +R DA+ L V +
Sbjct: 597 LNATNGSPEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPYAISDRLDAIEDLMVVPDKIS 656
Query: 721 LEFRKALSRLPDMERLLARLF-ASSEANGRN--SNKVVLYEDA--AKKQLQEFISALHGC 775
E L +LPD+ERLL+++ S +N ++ ++YE+ +KK++ +F+SAL G
Sbjct: 657 -EVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGF 715
Query: 776 ELMDQACSSLGAILENTESRQLHHILT-----PGKGLPAIVSILKHFKDAFDWVEANNSG 830
+++ + + ++++ +S+ L +LT P P + L + AFD +A +G
Sbjct: 716 KVICKIRGIMEEVIDDFKSKILKQVLTLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTG 775
Query: 831 RIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESL 890
I P G D DYD A ++E E SL ++L++QR +G +I Y IG++ Y LE+PE+
Sbjct: 776 LITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTIVYWGIGRNRYQLEIPENF 835
Query: 891 RG-SVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHN 949
++P +YEL+S+KKG RYWT I+K L L AE ++ +LK ++RL F +++
Sbjct: 836 TTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYK 895
Query: 950 KWRQMVAATA 959
W+ V A
Sbjct: 896 DWQAAVECIA 905
>UNIPROTKB|E1B9Q4 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0032405
"MutLalpha complex binding" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000400 "four-way junction DNA
binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0043531 GO:GO:0003682 GO:GO:0016887
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0045910 SMART:SM00293 GO:GO:0016446
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 CTD:2956 GeneTree:ENSGT00550000075024
EMBL:DAAA02030744 IPI:IPI00714742 RefSeq:NP_001179666.1
UniGene:Bt.98842 Ensembl:ENSBTAT00000001867 GeneID:540526
KEGG:bta:540526 NextBio:20878683 Uniprot:E1B9Q4
Length = 1360
Score = 941 (336.3 bits), Expect = 3.6e-94, P = 3.6e-94
Identities = 223/617 (36%), Positives = 338/617 (54%)
Query: 299 RRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFE 358
RRD RRRP +D TLY+P DFL + + G ++WW+ KS++ D VIF+K+GKFYE++
Sbjct: 377 RRDVHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKVGKFYEMYH 436
Query: 359 MDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRK 418
MDA +G EL L +MKG H GFPE F + L +KGY+V VEQTETPE +E R +
Sbjct: 437 MDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCR 496
Query: 419 EKG--SK-DKVVKREICAVVTKGTLTEGELLSANPD---ASYLMALTESNQSPASQSTDR 472
+ SK D+VV+REIC ++TKGT T +L +P + YL++L E + + + R
Sbjct: 497 KMAHISKYDRVVRREICRIITKGTQTYS-VLEGDPSENYSKYLLSLKEKEEESSGHT--R 553
Query: 473 CFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTR 532
+G+C VD + R +GQ PV+++ LS +T+ +
Sbjct: 554 VYGVCFVDTSLGRFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSMDTKMILKSSLS 613
Query: 533 NPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILS 592
+ L L+P S+FWDA T+ + + + LN+ D V Q G+T +
Sbjct: 614 SSLQEGLIPGSQFWDAAKTLRTL--LEEGYFIDKLNE-DGGVMLPQVL-KGMTSESDSIG 669
Query: 593 ELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFE-LLPCSGFGDMAKKP------ 645
++ G+ LSALGG +FYLKK +D+ LL A FE +P A +P
Sbjct: 670 --LTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYVPLDSDMVHATRPGAVFAK 727
Query: 646 ---YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLI 702
MVLDA L NLE+F N +G + GTL +++ C T FGKRLL+ WL PL N I
Sbjct: 728 ANQRMVLDAVTLNNLEIFLNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPHAI 787
Query: 703 RERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLF-ASSEANGRN--SNKVVLYED 759
+R DA+ L V + E L +LPD+ERLL+++ S +N ++ ++YE+
Sbjct: 788 NDRLDAIEDLMVVPDKIS-EVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEE 846
Query: 760 A--AKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILT-----PGKGLPAIVS 812
+KK++ +F+SAL G +++ + + ++++ +S+ L +LT P P + S
Sbjct: 847 TTYSKKKIIDFLSALEGFKVICKIIGIMEEVIDDFKSKILKQVLTLQTKSPEGRFPDLTS 906
Query: 813 ILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSI 872
L + AFD +A +G I P G D DYD A ++E E SL ++L++QR +G +I
Sbjct: 907 ELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTI 966
Query: 873 TYVTIGKDLYLLEVPES 889
Y IG++ Y LE+PE+
Sbjct: 967 VYWGIGRNRYQLEIPEN 983
Score = 689 (247.6 bits), Expect = 9.2e-67, P = 9.2e-67
Identities = 191/610 (31%), Positives = 310/610 (50%)
Query: 378 PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSK-DKVVKREICAVVT 436
P F + S+ V+K K RV E E E R+ SK D+VV+REIC ++T
Sbjct: 461 PEIAFGRYSDSL-VQK-GYKVARVEQTETPEMMEA-RCRKMAHISKYDRVVRREICRIIT 517
Query: 437 KGTLTEGELLSANPD---ASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMX 493
KGT T +L +P + YL++L E + + + R +G+C VD + R +GQ
Sbjct: 518 KGTQTYS-VLEGDPSENYSKYLLSLKEKEEESSGHT--RVYGVCFVDTSLGRFFIGQFSD 574
Query: 494 XXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDA-ET-- 550
PV+++ LS +T+ + + L L+P S+FWDA +T
Sbjct: 575 DRHCSRFRTLVAHYPPVQVLFEKGNLSMDTKMILKSSLSSSLQEGLIPGSQFWDAAKTLR 634
Query: 551 TVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSG--------- 601
T+LE +++ + + +E D + PG SEL + G
Sbjct: 635 TLLEEGYFIDKLNEDGGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCL 694
Query: 602 -SQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVF 660
Q L ++ Y+ LD ++ + P + F ++ MVLDA L NLE+F
Sbjct: 695 IDQELLSMANFEEYVP---LDSDMVHATR----PGAVFAKANQR--MVLDAVTLNNLEIF 745
Query: 661 ENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFA 720
N +G + GTL +++ C T FGKRLL+ WL PL N I +R DA+ L V +
Sbjct: 746 LNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPHAINDRLDAIEDLMVVPDKIS 805
Query: 721 LEFRKALSRLPDMERLLARLF-ASSEANGRN--SNKVVLYEDA--AKKQLQEFISALHGC 775
E L +LPD+ERLL+++ S +N ++ ++YE+ +KK++ +F+SAL G
Sbjct: 806 -EVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGF 864
Query: 776 ELMDQACSSLGAILENTESRQLHHILT-----PGKGLPAIVSILKHFKDAFDWVEANNSG 830
+++ + + ++++ +S+ L +LT P P + S L + AFD +A +G
Sbjct: 865 KVICKIIGIMEEVIDDFKSKILKQVLTLQTKSPEGRFPDLTSELNRWDTAFDHEKARKTG 924
Query: 831 RIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPES- 889
I P G D DYD A ++E E SL ++L++QR +G +I Y IG++ Y LE+PE+
Sbjct: 925 LITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTIVYWGIGRNRYQLEIPENF 984
Query: 890 LRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHN 949
+ ++P +YEL+S+KKG RYWT I+K LG L AE ++++LK ++RL F +++
Sbjct: 985 ITRNLPEEYELKSTKKGCKRYWTKTIEKKLGNLINAEERRDASLKDCMRRLFYNFDKNYK 1044
Query: 950 KWRQMVAATA 959
W+ V A
Sbjct: 1045 DWQAAVECIA 1054
>UNIPROTKB|I3LHZ9 [details] [associations]
symbol:LOC100739477 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:FP476043
Ensembl:ENSSSCT00000028757 Uniprot:I3LHZ9
Length = 1334
Score = 939 (335.6 bits), Expect = 4.2e-94, P = 4.2e-94
Identities = 225/617 (36%), Positives = 337/617 (54%)
Query: 299 RRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFE 358
RRD RRRP +D TLY+P DFL + + G ++WW+ KS++ D VIF+K+GKFYEL+
Sbjct: 353 RRDVHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVIFYKVGKFYELYH 412
Query: 359 MDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRK 418
MDA +G EL L +MKG H GFPE F + L +KGY+V VEQTETPE +E R +
Sbjct: 413 MDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCR 472
Query: 419 EKG--SK-DKVVKREICAVVTKGTLTEGELLSANPD---ASYLMALTESNQSPASQSTDR 472
+ SK D+VV+REIC V+TKGT T +L +P + YL++L E + + R
Sbjct: 473 KMAHISKYDRVVRREICRVITKGTQTYS-VLEGDPSENYSKYLLSLKEKEDDSSGHT--R 529
Query: 473 CFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTR 532
+G+C VD + + +GQ PV+++ LS ET+ +
Sbjct: 530 VYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGSLSTETKMILKGSLS 589
Query: 533 NPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILS 592
+ L L+P S+FWDA T+ + + + LN+ DS V Q G+T +
Sbjct: 590 SSLQEGLIPGSQFWDAGKTLRTL--LEEGYFTDKLNE-DSGVMLPQVL-KGMTSESDSIG 645
Query: 593 ELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFE-LLPCSGFGDMAKKP------ 645
++ G+ LSALGG +FYLKK +D+ LL A FE +P A +P
Sbjct: 646 --LTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDVVSASRPGAVFAK 703
Query: 646 ---YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLI 702
MVLDA L NLE+F N+ +G GTL +++ C T FGKRLL+ WL PL N I
Sbjct: 704 ANQRMVLDAVTLNNLEIFLNATNGSPEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPYAI 763
Query: 703 RERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLF-ASSEANGRN--SNKVVLYED 759
+R DA+ L V + E L +LPD+ERLL+++ S +N ++ ++YE+
Sbjct: 764 SDRLDAIEDLMVVPDKIS-EVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEE 822
Query: 760 A--AKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILT-----PGKGLPAIVS 812
+KK++ +F+SAL G +++ + + ++++ +S+ L +LT P P +
Sbjct: 823 TTYSKKKIIDFLSALEGFKVICKIRGIMEEVIDDFKSKILKQVLTLQTKNPEGRFPDLTV 882
Query: 813 ILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSI 872
L + AFD +A +G I P G D DYD A ++E E SL ++L++QR +G +I
Sbjct: 883 ELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTI 942
Query: 873 TYVTIGKDLYLLEVPES 889
Y IG++ Y LE+PE+
Sbjct: 943 VYWGIGRNRYQLEIPEN 959
Score = 670 (240.9 bits), Expect = 9.4e-65, P = 9.4e-65
Identities = 191/610 (31%), Positives = 307/610 (50%)
Query: 378 PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSK-DKVVKREICAVVT 436
P F + S+ V+K K RV E E E R+ SK D+VV+REIC V+T
Sbjct: 437 PEIAFGRYSDSL-VQK-GYKVARVEQTETPEMMEA-RCRKMAHISKYDRVVRREICRVIT 493
Query: 437 KGTLTEGELLSANPD---ASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMX 493
KGT T +L +P + YL++L E + + R +G+C VD + + +GQ
Sbjct: 494 KGTQTYS-VLEGDPSENYSKYLLSLKEKEDDSSGHT--RVYGVCFVDTSLGKFFIGQFSD 550
Query: 494 XXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDA-ET-- 550
PV+++ LS ET+ + + L L+P S+FWDA +T
Sbjct: 551 DRHCSRFRTLVAHYPPVQVLFEKGSLSTETKMILKGSLSSSLQEGLIPGSQFWDAGKTLR 610
Query: 551 TVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSG--------- 601
T+LE +++ +S + +E D + PG SEL + G
Sbjct: 611 TLLEEGYFTDKLNEDSGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCL 670
Query: 602 -SQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVF 660
Q L ++ Y+ LD ++ ++ P + F ++ MVLDA L NLE+F
Sbjct: 671 IDQELLSMANFEEYIP---LDSDVVSASR----PGAVFAKANQR--MVLDAVTLNNLEIF 721
Query: 661 ENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFA 720
N+ +G GTL +++ C T FGKRLL+ WL PL N I +R DA+ L V +
Sbjct: 722 LNATNGSPEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPYAISDRLDAIEDLMVVPDKIS 781
Query: 721 LEFRKALSRLPDMERLLARLF-ASSEANGRN--SNKVVLYEDA--AKKQLQEFISALHGC 775
E L +LPD+ERLL+++ S +N ++ ++YE+ +KK++ +F+SAL G
Sbjct: 782 -EVVDLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGF 840
Query: 776 ELMDQACSSLGAILENTESRQLHHILT-----PGKGLPAIVSILKHFKDAFDWVEANNSG 830
+++ + + ++++ +S+ L +LT P P + L + AFD +A +G
Sbjct: 841 KVICKIRGIMEEVIDDFKSKILKQVLTLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTG 900
Query: 831 RIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESL 890
I P G D DYD A ++E E SL ++L++QR +G +I Y IG++ Y LE+PE+
Sbjct: 901 LITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTIVYWGIGRNRYQLEIPENF 960
Query: 891 RG-SVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHN 949
++P +YEL+S+KKG RYWT I+K L L AE ++ +LK ++RL F +++
Sbjct: 961 TTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYK 1020
Query: 950 KWRQMVAATA 959
W+ V A
Sbjct: 1021 DWQAAVECIA 1030
>UNIPROTKB|B4DF41 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AC006509 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 UniGene:Hs.445052 HGNC:HGNC:7329
HOVERGEN:HBG000101 EMBL:AK293921 IPI:IPI01014931 SMR:B4DF41
STRING:B4DF41 Ensembl:ENST00000540021 Uniprot:B4DF41
Length = 1230
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 229/643 (35%), Positives = 347/643 (53%)
Query: 278 GDVSERFSAREADKFHFLGPD-RRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWE 336
GD S R + + +L + RRD RRRP +D TLY+P DFL + + G ++WW+
Sbjct: 226 GDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQ 285
Query: 337 FKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLAR 396
KS++ D VI +K+GKFYEL+ MDA +G EL L +MKG H GFPE F + L +
Sbjct: 286 IKSQNFDLVICYKVGKFYELYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQ 345
Query: 397 KGYRVLVVEQTETPEQLELRRKEKG--SK-DKVVKREICAVVTKGTLTEGELLSANPD-- 451
KGY+V VEQTETPE +E R ++ SK D+VV+REIC ++TKGT T +L +P
Sbjct: 346 KGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYS-VLEGDPSEN 404
Query: 452 -ASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPV 510
+ YL++L E + + + R +G+C VD + + +GQ PV
Sbjct: 405 YSKYLLSLKEKEEDSSGHT--RAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPV 462
Query: 511 EIIKPANMLSPETERAILRHTRN-PLVNDLVPLSEFWDAETTVLEI--KNIYNRITAESL 567
+++ LS ET + IL+ + + L L+P S+FWDA T+ + + + ++ +
Sbjct: 463 QVLFEKGNLSKET-KTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGI 521
Query: 568 NKADSNVANSQ-AEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLR 626
V +E D + PG SEL LSALGG +FYLKK +D+ LL
Sbjct: 522 GVMLPQVLKGMTSESDSIGLTPGEKSEL---------ALSALGGCVFYLKKCLIDQELLS 572
Query: 627 FAKFE-LLPCSG-------FGDMAKKPY--MVLDAPALENLEVFENSRSGDSSGTLYAQL 676
A FE +P G + K Y MVLDA L NLE+F N +G + GTL ++
Sbjct: 573 MANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERV 632
Query: 677 NHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERL 736
+ C T FGKRLL+ WL PL N I +R DA+ L V + E + L +LPD+ERL
Sbjct: 633 DTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKIS-EVVELLKKLPDLERL 691
Query: 737 LARLF-ASSEANGRN--SNKVVLYEDA--AKKQLQEFISALHGCELMDQACSSLGAILEN 791
L+++ S +N ++ ++YE+ +KK++ +F+SAL G ++M + + + +
Sbjct: 692 LSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADG 751
Query: 792 TESRQLHHILT-----PGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSAC 846
+S+ L +++ P P + L + AFD +A +G I P G D DYD A
Sbjct: 752 FKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQAL 811
Query: 847 KKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPES 889
++E E SL ++L++QR +G +I Y IG++ Y LE+PE+
Sbjct: 812 ADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPEN 854
Score = 668 (240.2 bits), Expect = 1.2e-64, P = 1.2e-64
Identities = 187/604 (30%), Positives = 304/604 (50%)
Query: 378 PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSK-DKVVKREICAVVT 436
P F + S+ V+K K RV E E E R+ SK D+VV+REIC ++T
Sbjct: 332 PEIAFGRYSDSL-VQK-GYKVARVEQTETPEMMEA-RCRKMAHISKYDRVVRREICRIIT 388
Query: 437 KGTLTEGELLSANPD---ASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMX 493
KGT T +L +P + YL++L E + + + R +G+C VD + + +GQ
Sbjct: 389 KGTQTYS-VLEGDPSENYSKYLLSLKEKEEDSSGHT--RAYGVCFVDTSLGKFFIGQFSD 445
Query: 494 XXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRN-PLVNDLVPLSEFWDAETTV 552
PV+++ LS ET + IL+ + + L L+P S+FWDA T+
Sbjct: 446 DRHCSRFRTLVAHYPPVQVLFEKGNLSKET-KTILKSSLSCSLQEGLIPGSQFWDASKTL 504
Query: 553 LEI--KNIYNRITAESLNKADSNVANSQ-AEGDGLTCLPGILSELISTGDSGSQV-LSAL 608
+ + + ++ + V +E D + PG SEL + G L
Sbjct: 505 RTLLEEEYFREKLSDGIGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKC 564
Query: 609 GGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPY--MVLDAPALENLEVFENSRSG 666
L + +E + + + + + G + K Y MVLDA L NLE+F N +G
Sbjct: 565 LIDQELLSMANFEEYIPLDS--DTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNG 622
Query: 667 DSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKA 726
+ GTL +++ C T FGKRLL+ WL PL N I +R DA+ L V + E +
Sbjct: 623 STEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKIS-EVVEL 681
Query: 727 LSRLPDMERLLARLF-ASSEANGRN--SNKVVLYEDA--AKKQLQEFISALHGCELMDQA 781
L +LPD+ERLL+++ S +N ++ ++YE+ +KK++ +F+SAL G ++M +
Sbjct: 682 LKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKI 741
Query: 782 CSSLGAILENTESRQLHHILT-----PGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHG 836
+ + + +S+ L +++ P P + L + AFD +A +G I P
Sbjct: 742 IGIMEEVADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKA 801
Query: 837 GVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRG-SVP 895
G D DYD A ++E E SL ++L++QR +G +I Y IG++ Y LE+PE+ ++P
Sbjct: 802 GFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLP 861
Query: 896 RDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMV 955
+YEL+S+KKG RYWT I+K L L AE ++ +LK ++RL F +++ W+ V
Sbjct: 862 EEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAV 921
Query: 956 AATA 959
A
Sbjct: 922 ECIA 925
>UNIPROTKB|F5H2F9 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0003682
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 GO:GO:0045910
GO:GO:0016446 EMBL:AC006509 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 HGNC:HGNC:7329 IPI:IPI01013073
ProteinModelPortal:F5H2F9 SMR:F5H2F9 Ensembl:ENST00000538136
ArrayExpress:F5H2F9 Bgee:F5H2F9 Uniprot:F5H2F9
Length = 1058
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 229/643 (35%), Positives = 347/643 (53%)
Query: 278 GDVSERFSAREADKFHFLGPD-RRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWE 336
GD S R + + +L + RRD RRRP +D TLY+P DFL + + G ++WW+
Sbjct: 54 GDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQ 113
Query: 337 FKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLAR 396
KS++ D VI +K+GKFYEL+ MDA +G EL L +MKG H GFPE F + L +
Sbjct: 114 IKSQNFDLVICYKVGKFYELYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQ 173
Query: 397 KGYRVLVVEQTETPEQLELRRKEKG--SK-DKVVKREICAVVTKGTLTEGELLSANPD-- 451
KGY+V VEQTETPE +E R ++ SK D+VV+REIC ++TKGT T +L +P
Sbjct: 174 KGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYS-VLEGDPSEN 232
Query: 452 -ASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPV 510
+ YL++L E + + + R +G+C VD + + +GQ PV
Sbjct: 233 YSKYLLSLKEKEEDSSGHT--RAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPV 290
Query: 511 EIIKPANMLSPETERAILRHTRN-PLVNDLVPLSEFWDAETTVLEI--KNIYNRITAESL 567
+++ LS ET + IL+ + + L L+P S+FWDA T+ + + + ++ +
Sbjct: 291 QVLFEKGNLSKET-KTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGI 349
Query: 568 NKADSNVANSQ-AEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLR 626
V +E D + PG SEL LSALGG +FYLKK +D+ LL
Sbjct: 350 GVMLPQVLKGMTSESDSIGLTPGEKSEL---------ALSALGGCVFYLKKCLIDQELLS 400
Query: 627 FAKFE-LLPCSG-------FGDMAKKPY--MVLDAPALENLEVFENSRSGDSSGTLYAQL 676
A FE +P G + K Y MVLDA L NLE+F N +G + GTL ++
Sbjct: 401 MANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERV 460
Query: 677 NHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERL 736
+ C T FGKRLL+ WL PL N I +R DA+ L V + E + L +LPD+ERL
Sbjct: 461 DTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKIS-EVVELLKKLPDLERL 519
Query: 737 LARLF-ASSEANGRN--SNKVVLYEDA--AKKQLQEFISALHGCELMDQACSSLGAILEN 791
L+++ S +N ++ ++YE+ +KK++ +F+SAL G ++M + + + +
Sbjct: 520 LSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADG 579
Query: 792 TESRQLHHILT-----PGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSAC 846
+S+ L +++ P P + L + AFD +A +G I P G D DYD A
Sbjct: 580 FKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQAL 639
Query: 847 KKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPES 889
++E E SL ++L++QR +G +I Y IG++ Y LE+PE+
Sbjct: 640 ADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPEN 682
Score = 668 (240.2 bits), Expect = 5.5e-65, P = 5.5e-65
Identities = 187/604 (30%), Positives = 304/604 (50%)
Query: 378 PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSK-DKVVKREICAVVT 436
P F + S+ V+K K RV E E E R+ SK D+VV+REIC ++T
Sbjct: 160 PEIAFGRYSDSL-VQK-GYKVARVEQTETPEMMEA-RCRKMAHISKYDRVVRREICRIIT 216
Query: 437 KGTLTEGELLSANPD---ASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMX 493
KGT T +L +P + YL++L E + + + R +G+C VD + + +GQ
Sbjct: 217 KGTQTYS-VLEGDPSENYSKYLLSLKEKEEDSSGHT--RAYGVCFVDTSLGKFFIGQFSD 273
Query: 494 XXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRN-PLVNDLVPLSEFWDAETTV 552
PV+++ LS ET + IL+ + + L L+P S+FWDA T+
Sbjct: 274 DRHCSRFRTLVAHYPPVQVLFEKGNLSKET-KTILKSSLSCSLQEGLIPGSQFWDASKTL 332
Query: 553 LEI--KNIYNRITAESLNKADSNVANSQ-AEGDGLTCLPGILSELISTGDSGSQV-LSAL 608
+ + + ++ + V +E D + PG SEL + G L
Sbjct: 333 RTLLEEEYFREKLSDGIGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKC 392
Query: 609 GGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPY--MVLDAPALENLEVFENSRSG 666
L + +E + + + + + G + K Y MVLDA L NLE+F N +G
Sbjct: 393 LIDQELLSMANFEEYIPLDS--DTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNG 450
Query: 667 DSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKA 726
+ GTL +++ C T FGKRLL+ WL PL N I +R DA+ L V + E +
Sbjct: 451 STEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKIS-EVVEL 509
Query: 727 LSRLPDMERLLARLF-ASSEANGRN--SNKVVLYEDA--AKKQLQEFISALHGCELMDQA 781
L +LPD+ERLL+++ S +N ++ ++YE+ +KK++ +F+SAL G ++M +
Sbjct: 510 LKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKI 569
Query: 782 CSSLGAILENTESRQLHHILT-----PGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHG 836
+ + + +S+ L +++ P P + L + AFD +A +G I P
Sbjct: 570 IGIMEEVADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKA 629
Query: 837 GVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRG-SVP 895
G D DYD A ++E E SL ++L++QR +G +I Y IG++ Y LE+PE+ ++P
Sbjct: 630 GFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLP 689
Query: 896 RDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMV 955
+YEL+S+KKG RYWT I+K L L AE ++ +LK ++RL F +++ W+ V
Sbjct: 690 EEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAV 749
Query: 956 AATA 959
A
Sbjct: 750 ECIA 753
>UNIPROTKB|P52701 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=ISS;IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISS;IBA] [GO:0009411 "response to
UV" evidence=ISS;IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=ISS;IBA] [GO:0045190 "isotype
switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0032405 "MutLalpha complex binding" evidence=IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IDA;IMP] [GO:0032301
"MutSalpha complex" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032142 "single guanine insertion
binding" evidence=IDA] [GO:0032143 "single thymine insertion
binding" evidence=IDA] [GO:0032357 "oxidized purine DNA binding"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=ISS] [GO:0008340
"determination of adult lifespan" evidence=ISS] [GO:0016447
"somatic recombination of immunoglobulin gene segments"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0045910
"negative regulation of DNA recombination" evidence=IDA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0003684 GO:GO:0003682 GO:GO:0000790 GO:GO:0045190 MIM:276300
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0045910 Orphanet:144 SMART:SM00293 MIM:608089 GO:GO:0008094
GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0051096 PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F
PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E PDBsum:2O8F
HOGENOM:HOG000243127 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
CTD:2956 EMBL:U73737 EMBL:U73732 EMBL:U73733 EMBL:U73734
EMBL:U73736 EMBL:D89645 EMBL:D89646 EMBL:AY082894 EMBL:BC004246
EMBL:U54777 EMBL:U28946 IPI:IPI00106847 IPI:IPI00384456 PIR:JC5839
RefSeq:NP_000170.1 UniGene:Hs.445052 PDB:2GFU PDBsum:2GFU
ProteinModelPortal:P52701 SMR:P52701 DIP:DIP-32972N IntAct:P52701
MINT:MINT-131993 STRING:P52701 PhosphoSite:P52701 DMDM:68067672
PaxDb:P52701 PeptideAtlas:P52701 PRIDE:P52701 DNASU:2956
Ensembl:ENST00000234420 GeneID:2956 KEGG:hsa:2956 UCSC:uc002rwc.2
UCSC:uc002rwd.4 GeneCards:GC02P048010 HGNC:HGNC:7329 HPA:CAB009091
HPA:HPA028376 HPA:HPA028446 MIM:600678 MIM:614350
neXtProt:NX_P52701 PharmGKB:PA184 HOVERGEN:HBG000101
InParanoid:P52701 OrthoDB:EOG4CG07F PhylomeDB:P52701
EvolutionaryTrace:P52701 GenomeRNAi:2956 NextBio:11716
PMAP-CutDB:P52701 ArrayExpress:P52701 Bgee:P52701 CleanEx:HS_MSH6
Genevestigator:P52701 GermOnline:ENSG00000116062 Uniprot:P52701
Length = 1360
Score = 929 (332.1 bits), Expect = 8.0e-93, P = 8.0e-93
Identities = 229/643 (35%), Positives = 347/643 (53%)
Query: 278 GDVSERFSAREADKFHFLGPD-RRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWE 336
GD S R + + +L + RRD RRRP +D TLY+P DFL + + G ++WW+
Sbjct: 356 GDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQ 415
Query: 337 FKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLAR 396
KS++ D VI +K+GKFYEL+ MDA +G EL L +MKG H GFPE F + L +
Sbjct: 416 IKSQNFDLVICYKVGKFYELYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQ 475
Query: 397 KGYRVLVVEQTETPEQLELRRKEKG--SK-DKVVKREICAVVTKGTLTEGELLSANPD-- 451
KGY+V VEQTETPE +E R ++ SK D+VV+REIC ++TKGT T +L +P
Sbjct: 476 KGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYS-VLEGDPSEN 534
Query: 452 -ASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPV 510
+ YL++L E + + + R +G+C VD + + +GQ PV
Sbjct: 535 YSKYLLSLKEKEEDSSGHT--RAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPV 592
Query: 511 EIIKPANMLSPETERAILRHTRN-PLVNDLVPLSEFWDAETTVLEI--KNIYNRITAESL 567
+++ LS ET + IL+ + + L L+P S+FWDA T+ + + + ++ +
Sbjct: 593 QVLFEKGNLSKET-KTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGI 651
Query: 568 NKADSNVANSQ-AEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLR 626
V +E D + PG SEL LSALGG +FYLKK +D+ LL
Sbjct: 652 GVMLPQVLKGMTSESDSIGLTPGEKSEL---------ALSALGGCVFYLKKCLIDQELLS 702
Query: 627 FAKFE-LLPCSG-------FGDMAKKPY--MVLDAPALENLEVFENSRSGDSSGTLYAQL 676
A FE +P G + K Y MVLDA L NLE+F N +G + GTL ++
Sbjct: 703 MANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERV 762
Query: 677 NHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERL 736
+ C T FGKRLL+ WL PL N I +R DA+ L V + E + L +LPD+ERL
Sbjct: 763 DTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKIS-EVVELLKKLPDLERL 821
Query: 737 LARLF-ASSEANGRN--SNKVVLYEDA--AKKQLQEFISALHGCELMDQACSSLGAILEN 791
L+++ S +N ++ ++YE+ +KK++ +F+SAL G ++M + + + +
Sbjct: 822 LSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADG 881
Query: 792 TESRQLHHILT-----PGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSAC 846
+S+ L +++ P P + L + AFD +A +G I P G D DYD A
Sbjct: 882 FKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQAL 941
Query: 847 KKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPES 889
++E E SL ++L++QR +G +I Y IG++ Y LE+PE+
Sbjct: 942 ADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPEN 984
Score = 668 (240.2 bits), Expect = 1.6e-64, P = 1.6e-64
Identities = 187/604 (30%), Positives = 304/604 (50%)
Query: 378 PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSK-DKVVKREICAVVT 436
P F + S+ V+K K RV E E E R+ SK D+VV+REIC ++T
Sbjct: 462 PEIAFGRYSDSL-VQK-GYKVARVEQTETPEMMEA-RCRKMAHISKYDRVVRREICRIIT 518
Query: 437 KGTLTEGELLSANPD---ASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMX 493
KGT T +L +P + YL++L E + + + R +G+C VD + + +GQ
Sbjct: 519 KGTQTYS-VLEGDPSENYSKYLLSLKEKEEDSSGHT--RAYGVCFVDTSLGKFFIGQFSD 575
Query: 494 XXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRN-PLVNDLVPLSEFWDAETTV 552
PV+++ LS ET + IL+ + + L L+P S+FWDA T+
Sbjct: 576 DRHCSRFRTLVAHYPPVQVLFEKGNLSKET-KTILKSSLSCSLQEGLIPGSQFWDASKTL 634
Query: 553 LEI--KNIYNRITAESLNKADSNVANSQ-AEGDGLTCLPGILSELISTGDSGSQV-LSAL 608
+ + + ++ + V +E D + PG SEL + G L
Sbjct: 635 RTLLEEEYFREKLSDGIGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKC 694
Query: 609 GGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPY--MVLDAPALENLEVFENSRSG 666
L + +E + + + + + G + K Y MVLDA L NLE+F N +G
Sbjct: 695 LIDQELLSMANFEEYIPLDS--DTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNG 752
Query: 667 DSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKA 726
+ GTL +++ C T FGKRLL+ WL PL N I +R DA+ L V + E +
Sbjct: 753 STEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKIS-EVVEL 811
Query: 727 LSRLPDMERLLARLF-ASSEANGRN--SNKVVLYEDA--AKKQLQEFISALHGCELMDQA 781
L +LPD+ERLL+++ S +N ++ ++YE+ +KK++ +F+SAL G ++M +
Sbjct: 812 LKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKI 871
Query: 782 CSSLGAILENTESRQLHHILT-----PGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHG 836
+ + + +S+ L +++ P P + L + AFD +A +G I P
Sbjct: 872 IGIMEEVADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKA 931
Query: 837 GVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRG-SVP 895
G D DYD A ++E E SL ++L++QR +G +I Y IG++ Y LE+PE+ ++P
Sbjct: 932 GFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLP 991
Query: 896 RDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMV 955
+YEL+S+KKG RYWT I+K L L AE ++ +LK ++RL F +++ W+ V
Sbjct: 992 EEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAV 1051
Query: 956 AATA 959
A
Sbjct: 1052 ECIA 1055
>FB|FBgn0036486 [details] [associations]
symbol:Msh6 "Msh6" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 EMBL:AE014296 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:BT050543 RefSeq:NP_648755.1 UniGene:Dm.966
ProteinModelPortal:Q9VUM0 SMR:Q9VUM0 DIP:DIP-23712N
MINT:MINT-323400 STRING:Q9VUM0 PaxDb:Q9VUM0
EnsemblMetazoa:FBtr0075646 GeneID:39654 KEGG:dme:Dmel_CG7003
UCSC:CG7003-RA CTD:2956 FlyBase:FBgn0036486
GeneTree:ENSGT00550000075024 InParanoid:Q9VUM0 OrthoDB:EOG4PNVXR
PhylomeDB:Q9VUM0 GenomeRNAi:39654 NextBio:814711 Bgee:Q9VUM0
GermOnline:CG7003 Uniprot:Q9VUM0
Length = 1190
Score = 817 (292.7 bits), Expect = 2.7e-83, Sum P(2) = 2.7e-83
Identities = 226/698 (32%), Positives = 343/698 (49%)
Query: 291 KFHFLGPDR-RDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFK 349
K FL PD+ +D + RRP YD TL++P FL LS G +QWW KS + D V+FFK
Sbjct: 224 KLEFLQPDKIKDKEGRRPDHPDYDKSTLHVPEKFLNGLSPGVRQWWVLKSDNYDCVLFFK 283
Query: 350 MGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTET 409
+GKFYEL+ MDA VG EL YM+GE H GFPE +F L +G++V VEQTET
Sbjct: 284 VGKFYELYHMDADVGVNELGFTYMRGEFAHSGFPEISFDKMSTILVDRGFKVARVEQTET 343
Query: 410 PEQLELRRKE-KGSK-DKVVKREICAVVTKGTLTEGELLSANPD--ASYLMALTESNQSP 465
P+ + R K K +K DKVV REIC + +GT G P+ +Y++A+ E ++
Sbjct: 344 PDMMTERCKRIKATKFDKVVAREICQITNRGTQVFGSQCKIGPNHQPNYMLAIVEKDEGT 403
Query: 466 ASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETER 525
S+ +G+C +D + LG+ PV + + LS T++
Sbjct: 404 CSR-----YGVCFIDTSIGDFHLGEFEDDKNCSRLLTLVSHHMPVLFLNEKSALSQRTQQ 458
Query: 526 AILRHTRNPLVNDLVPLS--EFWDAETTVLEIKNIYNRITAESLNKADSN----VANSQA 579
I+R ++ + VP + AE T +K + R A +D N + Q+
Sbjct: 459 -IVRTVLGGILKEPVPGNGKHACSAEKT---LKLLAERYYAGP--GSDDNWPLVLRTMQS 512
Query: 580 EGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFEL-LPCSGF 638
+ D L P D+ L ALG +F++ K L+ +L A+++L +P
Sbjct: 513 DMDHLGLTPN---------DNYKLALKALGQCIFFIHKCKLEPKVLPMARYQLYVPPDQL 563
Query: 639 GDMA-------KKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTW 691
D ++ +MVLDA L NL + S L + L+HC T FGKRLL W
Sbjct: 564 ADAKPAVASTLRRSHMVLDATTLSNLRIIGEEHS------LLSTLDHCCTKFGKRLLHHW 617
Query: 692 LARPLYNSGLIRERQDAVAGLRGVNQPFAL-EFRKALSRLPDMERLLAR--LFASSEANG 748
L P + +I+ERQDA+ L + P L E R L+ +PD ER LA+ LF + +
Sbjct: 618 LCAPSCDVSVIKERQDAIGEL--IRMPTELQEVRALLAPMPDFERNLAQIHLFGNKQIKQ 675
Query: 749 RN--SNKVVLYEDAA--KKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPG 804
+ ++ +L+E+ K++LQ F++ L G + + + + T +++ + G
Sbjct: 676 MDHPDSRAILFEEKLYNKQKLQGFMAVLKGFNDLTKLPTMFHQC-KTTLLKRITQLPESG 734
Query: 805 KGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQR 864
P + L++F AFD A +G I P G+D +YD+A + E+E L +L EQ
Sbjct: 735 GSFPDLSKELQYFATAFDHDAAAKTGVIAPQAGMDAEYDAAMDSIGEVEKRLKTYLVEQE 794
Query: 865 KLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKG---FFRYWTPNIKKLLGE 921
+ G ITY K Y L+VPES + Y L KG RY T + LL +
Sbjct: 795 RHFG-CRITYFGSDKKRYQLDVPESHASKANKSYTLEGQTKGKKPSRRYTTAETRALLKD 853
Query: 922 LSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATA 959
+ AE + LK + +RL +F H+++W+Q + A
Sbjct: 854 MQHAEDTRNMVLKDLARRLFEKFSNHYDQWKQCIDCVA 891
Score = 44 (20.5 bits), Expect = 2.7e-83, Sum P(2) = 2.7e-83
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 891 RGSVPRDYELRSSKKGFF--RYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCE 946
+G + R YEL + R T I + EK +ALK +L++L + C+
Sbjct: 1134 QGIIKRAYELSKKVEAIALQRKITAKIVAATAGNEDTKKEKINALKDLLKQL--KMCQ 1189
>WB|WBGene00003422 [details] [associations]
symbol:msh-6 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0032301 "MutSalpha complex" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 793 (284.2 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 217/717 (30%), Positives = 353/717 (49%)
Query: 266 DKLSNGFDNPVMGDVSERFSAREADKFHFLGPDR-RDAKRRRPGDVYYDPRTLYLPPDFL 324
+K + + V + +ERF + + F FL PD+ RD +R D YDP+TL++PPDF
Sbjct: 191 EKTTGAKNKAVELEPAERF---DHESFDFLKPDKIRDGFKRPMSDPEYDPKTLWVPPDFH 247
Query: 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPE 384
+ + G +QWW KS+H D ++ FK+GKFYE + MDA + L++ +M+G H GFPE
Sbjct: 248 QKQTPGHRQWWTMKSQHFDTILLFKVGKFYETYHMDAVEVVRALNIAFMRGSYAHAGFPE 307
Query: 385 RNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEG- 443
S ++L GY+V +EQTETP+ LE R ++ +K+KVV+RE+C V + GT T G
Sbjct: 308 HAASKFADQLMNHGYKVARIEQTETPQMLEERNQKTKTKEKVVRREVCRVTSNGTRTYGV 367
Query: 444 ----ELLSAN----PDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMXXX 495
+L SA+ P A +L+A+ E + +S+ +G+C++D T+ I +GQ
Sbjct: 368 LDGVDLGSASSTLDPTAKHLLAIKEFHNPETGKSS---YGVCMIDTTTAHIRIGQFEDDD 424
Query: 496 XXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEI 555
V+ I +S T+ I + V L+P +F AE V +
Sbjct: 425 YRSQLRTLLANVIVVQAIVERGSISSTTKSIINGILFSVPVEHLLPKKQFMTAEDVVRIV 484
Query: 556 KNIYNRITAESLNKADSNVANSQAEGDGLTCLPGIL--SELISTGDSGSQV-LSALGGTL 612
N E +D A+ E L G+L S ++ + Q+ LSA G
Sbjct: 485 SN-------EDYYGSD---ASEWPE-----VLKGMLEDSSILPKPSTDWQLALSAFGAIF 529
Query: 613 FYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPY-------MVLDAPALENLEVFENSRS 665
+YL+ S +D +L + + + KK ++LD ALENL + N R
Sbjct: 530 WYLRDSLIDVDMLSMRNVTIYNSNSMENDQKKEKIDWNGKNLILDGTALENLNIVPNGRD 589
Query: 666 GDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVN-QPFALEFR 724
+ +LY +N C T FG+RLLR+WL +P + + +RQ A+ L + F
Sbjct: 590 SHLT-SLYYVINKCSTPFGRRLLRSWLLQPTCDPKKLEQRQKAIKWLVSPDASSFMTTAT 648
Query: 725 KALSRLPDMERLLARL--FASSEANGRNSNKVVLYEDAAK---KQLQEFISALHGCELMD 779
L ++PD++RLL ++ + ++ + ++ D K K++ E ++A+ G +L +
Sbjct: 649 ATLKKIPDLDRLLQKIHTIGLKYRSEKHPDSRAIFFDTIKTNQKKIAELLAAIDGFKLCN 708
Query: 780 QACSSLGAILENTESRQL-HHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGV 838
+ + + E +L +L + + + + F+ FD A G+I+P+ G
Sbjct: 709 KLRKEYIKVQKEGEGCELLDELLGNEQEMEEVDENIYFFEKMFDRSTAMKDGKIVPNAGC 768
Query: 839 DMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDY 898
D +YD A +VKE L + K SI +V GK YLLE+PE+ + V +
Sbjct: 769 DEEYDEALNRVKEALNELNDYKDSVAKKYS-CSIKFVDSGKVKYLLEMPENTK--VSSSF 825
Query: 899 ELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMV 955
EL+S +KGF RY TP+ ++L+ L E EK +R+ QF + W + V
Sbjct: 826 ELKSRRKGFIRYSTPDSEQLVAALDAVEKEKSKLGDDATRRVFEQFGHKNPIWLETV 882
>UNIPROTKB|Q9N3T8 [details] [associations]
symbol:msh-6 "Protein MSH-6" species:6239 "Caenorhabditis
elegans" [GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 793 (284.2 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 217/717 (30%), Positives = 353/717 (49%)
Query: 266 DKLSNGFDNPVMGDVSERFSAREADKFHFLGPDR-RDAKRRRPGDVYYDPRTLYLPPDFL 324
+K + + V + +ERF + + F FL PD+ RD +R D YDP+TL++PPDF
Sbjct: 191 EKTTGAKNKAVELEPAERF---DHESFDFLKPDKIRDGFKRPMSDPEYDPKTLWVPPDFH 247
Query: 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPE 384
+ + G +QWW KS+H D ++ FK+GKFYE + MDA + L++ +M+G H GFPE
Sbjct: 248 QKQTPGHRQWWTMKSQHFDTILLFKVGKFYETYHMDAVEVVRALNIAFMRGSYAHAGFPE 307
Query: 385 RNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEG- 443
S ++L GY+V +EQTETP+ LE R ++ +K+KVV+RE+C V + GT T G
Sbjct: 308 HAASKFADQLMNHGYKVARIEQTETPQMLEERNQKTKTKEKVVRREVCRVTSNGTRTYGV 367
Query: 444 ----ELLSAN----PDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMXXX 495
+L SA+ P A +L+A+ E + +S+ +G+C++D T+ I +GQ
Sbjct: 368 LDGVDLGSASSTLDPTAKHLLAIKEFHNPETGKSS---YGVCMIDTTTAHIRIGQFEDDD 424
Query: 496 XXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEI 555
V+ I +S T+ I + V L+P +F AE V +
Sbjct: 425 YRSQLRTLLANVIVVQAIVERGSISSTTKSIINGILFSVPVEHLLPKKQFMTAEDVVRIV 484
Query: 556 KNIYNRITAESLNKADSNVANSQAEGDGLTCLPGIL--SELISTGDSGSQV-LSALGGTL 612
N E +D A+ E L G+L S ++ + Q+ LSA G
Sbjct: 485 SN-------EDYYGSD---ASEWPE-----VLKGMLEDSSILPKPSTDWQLALSAFGAIF 529
Query: 613 FYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPY-------MVLDAPALENLEVFENSRS 665
+YL+ S +D +L + + + KK ++LD ALENL + N R
Sbjct: 530 WYLRDSLIDVDMLSMRNVTIYNSNSMENDQKKEKIDWNGKNLILDGTALENLNIVPNGRD 589
Query: 666 GDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVN-QPFALEFR 724
+ +LY +N C T FG+RLLR+WL +P + + +RQ A+ L + F
Sbjct: 590 SHLT-SLYYVINKCSTPFGRRLLRSWLLQPTCDPKKLEQRQKAIKWLVSPDASSFMTTAT 648
Query: 725 KALSRLPDMERLLARL--FASSEANGRNSNKVVLYEDAAK---KQLQEFISALHGCELMD 779
L ++PD++RLL ++ + ++ + ++ D K K++ E ++A+ G +L +
Sbjct: 649 ATLKKIPDLDRLLQKIHTIGLKYRSEKHPDSRAIFFDTIKTNQKKIAELLAAIDGFKLCN 708
Query: 780 QACSSLGAILENTESRQL-HHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGV 838
+ + + E +L +L + + + + F+ FD A G+I+P+ G
Sbjct: 709 KLRKEYIKVQKEGEGCELLDELLGNEQEMEEVDENIYFFEKMFDRSTAMKDGKIVPNAGC 768
Query: 839 DMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDY 898
D +YD A +VKE L + K SI +V GK YLLE+PE+ + V +
Sbjct: 769 DEEYDEALNRVKEALNELNDYKDSVAKKYS-CSIKFVDSGKVKYLLEMPENTK--VSSSF 825
Query: 899 ELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMV 955
EL+S +KGF RY TP+ ++L+ L E EK +R+ QF + W + V
Sbjct: 826 ELKSRRKGFIRYSTPDSEQLVAALDAVEKEKSKLGDDATRRVFEQFGHKNPIWLETV 882
>ZFIN|ZDB-GENE-020905-3 [details] [associations]
symbol:msh6 "mutS homolog 6 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0045190 "isotype switching" evidence=IBA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 ZFIN:ZDB-GENE-020905-3 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0045190
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 GO:GO:0016446
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 HSSP:P23909 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
HOVERGEN:HBG000101 EMBL:AF412834 IPI:IPI00513357 UniGene:Dr.4108
ProteinModelPortal:Q90XA6 SMR:Q90XA6 STRING:Q90XA6
InParanoid:Q90XA6 ArrayExpress:Q90XA6 Uniprot:Q90XA6
Length = 1369
Score = 755 (270.8 bits), Expect = 7.5e-74, P = 7.5e-74
Identities = 183/525 (34%), Positives = 286/525 (54%)
Query: 299 RRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFE 358
R+DA+R+R D YDP TLY+P DFL + G ++WW+ KS+ D V+F+K+GKFYEL+
Sbjct: 377 RKDAQRKRQSDENYDPTTLYVPEDFLNRTTPGMRRWWQLKSEMFDTVLFYKVGKFYELYH 436
Query: 359 MDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRK 418
MDA +G EL+L +MKG H GFPE F + L +KGY+V VEQTETP+ +E R K
Sbjct: 437 MDAVIGVNELNLTFMKGTWAHSGFPEIGFGRFSDVLVQKGYKVARVEQTETPDMMEARCK 496
Query: 419 E--KGSK-DKVVKREICAVVTKGTLTEGELLSANPD--ASYLMALTESNQSPASQSTDRC 473
+ + +K DKVVKRE+C ++T+GT T L A + + YL+++ E ++ S
Sbjct: 497 KLARPTKFDKVVKREVCRIITRGTQTYSVLDGAPSETQSKYLLSIKEKSEED-STGHGHI 555
Query: 474 FGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRN 533
+G+C +D + R +GQ P ++I S ET + +
Sbjct: 556 YGVCFIDTSVGRFHIGQFQDDRHCSRLRTLVAHYSPAQVIFEKGNPSIETLKIFKAIVAS 615
Query: 534 PLVNDLVPLSEFWDAETTVLEI-KNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILS 592
L L S+FWDA+ T+ + + Y + + + NK +S + + L +
Sbjct: 616 SLQEGLNAGSQFWDAQKTLKVLAEEDYFKESKDD-NKKESVLPPA------LKAMTSECD 668
Query: 593 ELISTGDSGSQV-LSALGGTLFYLKKSFLDETLLRFAKFE-LLPC------SGFGD--MA 642
L T +G ++ LSALGG +FYLKK +D+ L FE +P +G A
Sbjct: 669 ALSLTPKTGYELALSALGGCMFYLKKCLVDQELFSMGNFEEYVPVDVEMEQAGGASCFFA 728
Query: 643 K-KPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGL 701
K MVLD L NLE+ +NS +G GTL +L+ C T FGKRLL+ W+ PL N
Sbjct: 729 KTNQRMVLDGVTLANLEILQNSSTGGPEGTLLERLDTCCTPFGKRLLKQWICAPLCNPSS 788
Query: 702 IRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFA-SSEANGRN--SNKVVLYE 758
I +R DA+ L G + E L +LPD+ERLL+++ + + G++ ++ +LYE
Sbjct: 789 IGDRLDALEDLMGAPSQTS-EVTDLLKKLPDLERLLSKIHSMGTPLKGQDHPDSRAILYE 847
Query: 759 DA--AKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHIL 801
+ +K+++ +F++AL G ++M + S + + E +S+ L ++
Sbjct: 848 EVVYSKRKIADFLAALEGFKVMKEIVSIMEPVGEGLKSKLLRQVV 892
Score = 624 (224.7 bits), Expect = 8.7e-60, P = 8.7e-60
Identities = 182/604 (30%), Positives = 302/604 (50%)
Query: 378 PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSK-DKVVKREICAVVT 436
P GF FS + + K RV E + E ++ + +K DKVVKRE+C ++T
Sbjct: 461 PEIGFGR--FSDVLVQKGYKVARVEQTETPDMMEA-RCKKLARPTKFDKVVKREVCRIIT 517
Query: 437 KGTLTEGELLSANPD--ASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMXX 494
+GT T L A + + YL+++ E ++ S +G+C +D + R +GQ
Sbjct: 518 RGTQTYSVLDGAPSETQSKYLLSIKEKSEED-STGHGHIYGVCFIDTSVGRFHIGQFQDD 576
Query: 495 XXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLE 554
P ++I S ET + + L L S+FWDA+ T+
Sbjct: 577 RHCSRLRTLVAHYSPAQVIFEKGNPSIETLKIFKAIVASSLQEGLNAGSQFWDAQKTLKV 636
Query: 555 I-KNIYNRITAESLNKADSNVANS----QAEGDGLTCLPGILSELISTGDSGSQ--VLSA 607
+ + Y + + + NK +S + + +E D L+ P EL + G +
Sbjct: 637 LAEEDYFKESKDD-NKKESVLPPALKAMTSECDALSLTPKTGYELALSALGGCMFYLKKC 695
Query: 608 LGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAK-KPYMVLDAPALENLEVFENSRSG 666
L + +F + + + S F AK MVLD L NLE+ +NS +G
Sbjct: 696 LVDQELFSMGNFEEYVPVDVEMEQAGGASCF--FAKTNQRMVLDGVTLANLEILQNSSTG 753
Query: 667 DSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKA 726
GTL +L+ C T FGKRLL+ W+ PL N I +R DA+ L G + E
Sbjct: 754 GPEGTLLERLDTCCTPFGKRLLKQWICAPLCNPSSIGDRLDALEDLMGAPSQTS-EVTDL 812
Query: 727 LSRLPDMERLLARLFA-SSEANGRN--SNKVVLYEDA--AKKQLQEFISALHGCELMDQA 781
L +LPD+ERLL+++ + + G++ ++ +LYE+ +K+++ +F++AL G ++M +
Sbjct: 813 LKKLPDLERLLSKIHSMGTPLKGQDHPDSRAILYEEVVYSKRKIADFLAALEGFKVMKEI 872
Query: 782 CSSLGAILENTESRQLHHIL---TPGK-GL-PAIVSILKHFKDAFDWVEANNSGRIIPHG 836
S + + E +S+ L ++ T + GL P + LK + AFD +A +G I P
Sbjct: 873 VSIMEPVGEGLKSKLLRQVVLLKTENEDGLFPDLSPELKRWDTAFDHQKARTTGVITPKA 932
Query: 837 GVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESL-RGSVP 895
G D +YD A +KE E L +L Q+K LG +++Y G++ Y LEVPES+ S+P
Sbjct: 933 GFDPEYDQALNGIKECERDLQDYLDRQKKRLGCKNLSYWGTGRNRYQLEVPESVSERSLP 992
Query: 896 RDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMV 955
+YE+RS+KKG+ RY T +I+++ EL E ++++ALK ++RL F +++ W+ V
Sbjct: 993 EEYEVRSTKKGWKRYSTKDIERMFSELQSWEDKRDAALKDCMRRLFYNFDKNYKDWQTAV 1052
Query: 956 AATA 959
A
Sbjct: 1053 ECMA 1056
>ASPGD|ASPL0000041666 [details] [associations]
symbol:mshA species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 358 (131.1 bits), Expect = 1.6e-69, Sum P(3) = 1.6e-69
Identities = 90/265 (33%), Positives = 137/265 (51%)
Query: 300 RDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEM 359
RD GD YDPRTLY+PP S +KQ+WE K K D V+FFK GKFYEL+E
Sbjct: 264 RDIDGHPIGDPEYDPRTLYIPPLAWSKFSPFEKQYWEIKQKFWDTVVFFKKGKFYELYEN 323
Query: 360 DAHVGAKELDLQYM-KGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELR-- 416
DA +G + DL+ + G PE + + KG+++ V+Q+E+ E+R
Sbjct: 324 DATIGHQLFDLKLTDRVNMRMVGVPESSLDHWANQFVAKGFKIARVDQSESALGKEMRER 383
Query: 417 --RKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTES--NQSPASQSTDR 472
+K G ++K+++RE+ V+T GTL EG +L + +++ +A+ E+ PA
Sbjct: 384 DGKKGGGKEEKIIRRELACVLTAGTLVEGAMLQDDM-STFCVAIKEAIIENLPA------ 436
Query: 473 CFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTR 532
FGI VD AT + L + + RP E++ + +S + R IL++
Sbjct: 437 -FGIAFVDTATGQFFLTEFVDDVDMTKFETFVAQTRPQELLLEKSTVSQKALR-ILKNNT 494
Query: 533 NPLV--NDLVPLSEFWDAETTVLEI 555
P N L P EFW+A+ TV E+
Sbjct: 495 GPTTIWNYLKPGKEFWEADITVREL 519
Score = 265 (98.3 bits), Expect = 1.6e-69, Sum P(3) = 1.6e-69
Identities = 60/217 (27%), Positives = 120/217 (55%)
Query: 741 FASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQ--LH 798
FAS + +++ AA + Q+F+ L G E ++ S +L+++ S + +
Sbjct: 662 FASQLTKMPDLERLISRIHAANCRAQDFVRVLEGFEQIEYTMS----LLKDSGSGEGVIG 717
Query: 799 HILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTK 858
++ K +P + +L+++K AFD +A SG ++P GV+ D+DS+ + ++++ L
Sbjct: 718 QLI---KSMPDLTELLEYWKTAFDHNQAKESGILVPKPGVEEDFDSSQETIRQLHQDLDD 774
Query: 859 HLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKL 918
LK R+ LG T+I Y GK++Y +EVP ++ ++PR+++ S+ K RY+ P ++
Sbjct: 775 LLKRTRRELGSTAICYRDNGKEIYQMEVPIKVK-NIPRNWDQMSATKQVKRYYFPELRTT 833
Query: 919 LGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMV 955
+ +L +A+ +K + +R +F EH++ W V
Sbjct: 834 IRKLQEAQETHSQIVKEVSKRFYARFDEHYSTWLSAV 870
Score = 221 (82.9 bits), Expect = 1.6e-69, Sum P(3) = 1.6e-69
Identities = 50/141 (35%), Positives = 77/141 (54%)
Query: 604 VLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENS 663
V+SA G + YL+ L+ L+ F S + + K +VLD L N+E+F NS
Sbjct: 549 VMSAFGALVQYLRLLKLERDLITIGNF-----SWYDPIKKASSLVLDGQTLINMEIFANS 603
Query: 664 RSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEF 723
G GTL+ LN C+T FGKR+ + W+ PL + I R DAV L + +F
Sbjct: 604 FDGGVDGTLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRINARLDAVDALNA-DSSVRDQF 662
Query: 724 RKALSRLPDMERLLARLFASS 744
L+++PD+ERL++R+ A++
Sbjct: 663 ASQLTKMPDLERLISRIHAAN 683
>UNIPROTKB|Q5BCM2 [details] [associations]
symbol:AN1708.2 "Protein required for mismatch repair in
mitosis and meiosis (Eurofung)" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 358 (131.1 bits), Expect = 1.6e-69, Sum P(3) = 1.6e-69
Identities = 90/265 (33%), Positives = 137/265 (51%)
Query: 300 RDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEM 359
RD GD YDPRTLY+PP S +KQ+WE K K D V+FFK GKFYEL+E
Sbjct: 264 RDIDGHPIGDPEYDPRTLYIPPLAWSKFSPFEKQYWEIKQKFWDTVVFFKKGKFYELYEN 323
Query: 360 DAHVGAKELDLQYM-KGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELR-- 416
DA +G + DL+ + G PE + + KG+++ V+Q+E+ E+R
Sbjct: 324 DATIGHQLFDLKLTDRVNMRMVGVPESSLDHWANQFVAKGFKIARVDQSESALGKEMRER 383
Query: 417 --RKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTES--NQSPASQSTDR 472
+K G ++K+++RE+ V+T GTL EG +L + +++ +A+ E+ PA
Sbjct: 384 DGKKGGGKEEKIIRRELACVLTAGTLVEGAMLQDDM-STFCVAIKEAIIENLPA------ 436
Query: 473 CFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTR 532
FGI VD AT + L + + RP E++ + +S + R IL++
Sbjct: 437 -FGIAFVDTATGQFFLTEFVDDVDMTKFETFVAQTRPQELLLEKSTVSQKALR-ILKNNT 494
Query: 533 NPLV--NDLVPLSEFWDAETTVLEI 555
P N L P EFW+A+ TV E+
Sbjct: 495 GPTTIWNYLKPGKEFWEADITVREL 519
Score = 265 (98.3 bits), Expect = 1.6e-69, Sum P(3) = 1.6e-69
Identities = 60/217 (27%), Positives = 120/217 (55%)
Query: 741 FASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQ--LH 798
FAS + +++ AA + Q+F+ L G E ++ S +L+++ S + +
Sbjct: 662 FASQLTKMPDLERLISRIHAANCRAQDFVRVLEGFEQIEYTMS----LLKDSGSGEGVIG 717
Query: 799 HILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTK 858
++ K +P + +L+++K AFD +A SG ++P GV+ D+DS+ + ++++ L
Sbjct: 718 QLI---KSMPDLTELLEYWKTAFDHNQAKESGILVPKPGVEEDFDSSQETIRQLHQDLDD 774
Query: 859 HLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKL 918
LK R+ LG T+I Y GK++Y +EVP ++ ++PR+++ S+ K RY+ P ++
Sbjct: 775 LLKRTRRELGSTAICYRDNGKEIYQMEVPIKVK-NIPRNWDQMSATKQVKRYYFPELRTT 833
Query: 919 LGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMV 955
+ +L +A+ +K + +R +F EH++ W V
Sbjct: 834 IRKLQEAQETHSQIVKEVSKRFYARFDEHYSTWLSAV 870
Score = 221 (82.9 bits), Expect = 1.6e-69, Sum P(3) = 1.6e-69
Identities = 50/141 (35%), Positives = 77/141 (54%)
Query: 604 VLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENS 663
V+SA G + YL+ L+ L+ F S + + K +VLD L N+E+F NS
Sbjct: 549 VMSAFGALVQYLRLLKLERDLITIGNF-----SWYDPIKKASSLVLDGQTLINMEIFANS 603
Query: 664 RSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEF 723
G GTL+ LN C+T FGKR+ + W+ PL + I R DAV L + +F
Sbjct: 604 FDGGVDGTLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRINARLDAVDALNA-DSSVRDQF 662
Query: 724 RKALSRLPDMERLLARLFASS 744
L+++PD+ERL++R+ A++
Sbjct: 663 ASQLTKMPDLERLISRIHAAN 683
>DICTYBASE|DDB_G0268614 [details] [associations]
symbol:msh6 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0032301 "MutSalpha
complex" evidence=ISS;IBA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0268614
GO:GO:0005524 GO:GO:0009411 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 RefSeq:XP_647085.1 STRING:Q55GU9 PRIDE:Q55GU9
EnsemblProtists:DDB0229918 GeneID:8615889 KEGG:ddi:DDB_G0268614
ProtClustDB:CLSZ2497299 Uniprot:Q55GU9
Length = 1260
Score = 397 (144.8 bits), Expect = 5.8e-65, Sum P(2) = 5.8e-65
Identities = 114/407 (28%), Positives = 202/407 (49%)
Query: 555 IKNIYN-RITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLF 613
+K + N R++ E + D+ +Q G G T P L ++ + ++ ALGG +
Sbjct: 563 VKPVMNARLSLEYWDPTDTMERITQLCG-GKT--PETLCQM----KNEEYLMGALGGCIS 615
Query: 614 YLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLY 673
YL + +++ A+F+ G+ M+LD L NLE+F NS G + GTL+
Sbjct: 616 YLMDIKIGNSVVEQARFKRFNPLDIGNS-----MILDGQCLVNLEIFNNSTDGSTEGTLF 670
Query: 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKA-LSRLPD 732
++ C TAFGKR+ R W+ RPL N I +RQ A+ LR + P L+ A L++LPD
Sbjct: 671 KLMDRCTTAFGKRMFRQWICRPLANKNAIVDRQKAIEFLR--DSPETLQKVTAILNKLPD 728
Query: 733 MERLLARLFASSEANGRNSNKVVLYEDAAKKQLQ-----EFISALH--GCELMDQACSSL 785
+ER++AR+ A + + + +++ K L+ E I ++H C MD +
Sbjct: 729 LERMIARIRAQTSKISDLISVLNHFDNIHSKLLELLDEAEQIESIHLRSCLFMDNQQDN- 787
Query: 786 GAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSA 845
I E S ++I G P + ++ + +F +E + R++P G+ +++D
Sbjct: 788 DDIDEQENSNNNNNIRY--SGYPNLKPYIERVRKSFT-IEQD---RVVPSKGLFLEFDQC 841
Query: 846 CKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKK 905
++ +E S KHL+EQ+ I Y +GK++Y +E+P + +P + L+SS
Sbjct: 842 LGNIQSLEQSFAKHLEEQKAHFKCNKIEYKHMGKEIYQIEIPVAFTKKLPAGFSLKSSSS 901
Query: 906 GFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWR 952
RY +P + K L L + E K +L++++ F + N ++
Sbjct: 902 KVNRYHSPFVTKNLTSLLEERDTYEVLSKEVLKKILSNFAIYFNHFQ 948
Score = 354 (129.7 bits), Expect = 5.8e-65, Sum P(2) = 5.8e-65
Identities = 89/284 (31%), Positives = 147/284 (51%)
Query: 290 DKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFK 349
+++ FL + +DA YD RTL++P L S ++Q+W+ KSK+ D V+FFK
Sbjct: 324 ERYSFL-VNIKDANGNPKDHPDYDKRTLHIPASCLSKFSPFERQFWDIKSKNYDTVVFFK 382
Query: 350 MGKFYELFEMDAHVGAKELDLQYM-KGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTE 408
GKFYEL+E DA +G ++L L+ + G PE +F+ KL G++V V+Q E
Sbjct: 383 KGKFYELYESDADIGHQQLHLKLTDRVNMRMVGVPEMSFNHWASKLIHLGHKVAKVDQME 442
Query: 409 TPEQLELRRKEKGS---KDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSP 465
T + R+ EKG KD +++RE+ +++T GTL + ++++ + ++YLMA+ E+
Sbjct: 443 TSIGMAKRQNEKGGRNKKDSIIQRELTSILTAGTLLDEQMIT-DQTSTYLMAIKENEY-- 499
Query: 466 ASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETER 525
D+ +G+C VDV+ L + P EI+ SP+T
Sbjct: 500 -----DKQYGVCFVDVSIGEFYLCTIQDDDNRMQFETLLLQMMPKEIVYEKGATSPKTIS 554
Query: 526 AILR--HTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESL 567
+ R T P++N + L E+WD T+ I + T E+L
Sbjct: 555 IMKRVLSTVKPVMNARLSL-EYWDPTDTMERITQLCGGKTPETL 597
>UNIPROTKB|Q7RKG5 [details] [associations]
symbol:PY02936 "G/T mismatch binding protein-related"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
KO:K08737 InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 EMBL:AABL01000828
RefSeq:XP_730891.1 ProteinModelPortal:Q7RKG5 STRING:Q7RKG5
GeneID:3830116 KEGG:pyo:PY02936 EuPathDB:PlasmoDB:PY02936
Uniprot:Q7RKG5
Length = 1261
Score = 388 (141.6 bits), Expect = 2.8e-64, Sum P(2) = 2.8e-64
Identities = 126/430 (29%), Positives = 206/430 (47%)
Query: 535 LVNDLVPLSEFWDAETTVLEIKNIYNRITA-ESLNKADSNVANSQAEGDGLTCLPGILSE 593
L+ L P + ++ E+ +I+ I A L +S N A D + + +
Sbjct: 486 LLAQLCPAEILYCSKNINKEVLSIFKNIPACPELTSVNS-FPNIIASLDEVNKYFENIPK 544
Query: 594 LISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKP-YMVLDAP 652
+ + V+ A GG + YL+ LD+ +L+F K E F D+ KK YMVLDA
Sbjct: 545 ALEAYKEQNSVICAFGGFIVYLRSLLLDKKILKFCKIE------FYDLFKKDNYMVLDAT 598
Query: 653 ALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGL 712
AL++LE+ E ++SG++ +LY +N T FG R +R W+ PL N I +R D V L
Sbjct: 599 ALKHLEILE-TQSGETKNSLYDYVNKTCTNFGARNMRRWVCSPLLNCDKINQRLDVVEFL 657
Query: 713 RGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISAL 772
R + +L R L +LPD+ERLL ++ + + R + V +++ +L+EF++ L
Sbjct: 658 RKNDHILSL-IRLKLKKLPDIERLLNKICIQASQSERGA---VFFDNIVNTKLKEFVTFL 713
Query: 773 HGCELMDQACSSLGAI--LENTESRQLHHILTPG--------KG-LPAIVSILKHFKDAF 821
+ + +D + +I E+ +L I KG P I I F +
Sbjct: 714 NAFKEIDNMLIEINSIDSEEDLIPTRLFEITNTYNKISKNNIKGNYPEIDKITNEFLEKI 773
Query: 822 DWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDL 881
+ + + P G D D+ KK K+IE L L + +K+L ++ YV K
Sbjct: 774 -YFDGEKEYK--PADGCDDAIDAINKKEKDIEKELNNILVDIKKILKIPNLKYVH-AKYK 829
Query: 882 YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLI 941
Y +E P+++ S ++ E+ S KKGF R IK L+ L E EK+ A+ Q++
Sbjct: 830 YEIECPDNVPKSFLKEVEITSVKKGFVRIQNEEIKNLVEMLEDIEQEKKDAIYPFFQKIF 889
Query: 942 GQFCEHHNKW 951
F EH+ K+
Sbjct: 890 HLFYEHYEKY 899
Score = 357 (130.7 bits), Expect = 2.8e-64, Sum P(2) = 2.8e-64
Identities = 91/283 (32%), Positives = 146/283 (51%)
Query: 300 RDAKRRRPGDVYYDPRTLYLPP-------DFLR-NLSEGQKQWWEFKSKHMDKVIFFKMG 351
RD P YD T++ PP ++ + + + G +Q+W+ KSK+ DK+IFFKMG
Sbjct: 265 RDINLNAPDHPNYDSSTIWTPPQDHQWAIEYKQAHYTPGMQQFWKIKSKNFDKIIFFKMG 324
Query: 352 KFYELFEMDAHVGAKELDLQYMKGEQ-PHCGFPERNFSMNVEKLARKGYRVLVVEQTETP 410
+FYE+F +DA + L +M GEQ PH GFPE++ + +K+ G++V+V+EQ ETP
Sbjct: 325 RFYEIFYIDACIMHTICGLNWMNGEQKPHLGFPEQSLHLYAKKVINSGHKVVVIEQMETP 384
Query: 411 EQLELRRK-EKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMAL---------TE 460
++LE R K G KDK +KREI + TKGT+ +LSA + Y++ +
Sbjct: 385 KELEQRNKTSSGPKDKAIKREINEIYTKGTILHDNMLSA--ETKYIICFHFDDIEDIGDD 442
Query: 461 SNQSPASQSTDRC-FGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANML 519
N + + S +C FG V DVATS I +G P EI+ + +
Sbjct: 443 DNNNNNAGSQTKCNFGFVVSDVATSYISVGYCNDDESRIELRTLLAQLCPAEILYCSKNI 502
Query: 520 SPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRI 562
+ E +I ++ P +L ++ F + ++ E+ + I
Sbjct: 503 NKEV-LSIFKNI--PACPELTSVNSFPNIIASLDEVNKYFENI 542
>SGD|S000002504 [details] [associations]
symbol:MSH6 "Protein required for mismatch repair in mitosis
and meiosis, forms a" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000710 "meiotic
mismatch repair" evidence=IMP] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032138 "single base insertion or
deletion binding" evidence=IMP;IDA] [GO:0000400 "four-way junction
DNA binding" evidence=IDA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002504
GO:GO:0005524 KO:K06630 GO:GO:0009411 GO:GO:0003684 EMBL:BK006938
GO:GO:0030983 EMBL:Z47746 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 RefSeq:NP_010384.3 GeneID:851676 KEGG:sce:YDR099W
GO:GO:0008094 GO:GO:0036297 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0000710 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
PIR:S51246 RefSeq:NP_010382.3 ProteinModelPortal:Q03834 SMR:Q03834
DIP:DIP-2423N IntAct:Q03834 MINT:MINT-618151 STRING:Q03834
PaxDb:Q03834 PeptideAtlas:Q03834 EnsemblFungi:YDR097C GeneID:851671
KEGG:sce:YDR097C CYGD:YDR097c NextBio:969292 Genevestigator:Q03834
GermOnline:YDR097C Uniprot:Q03834
Length = 1242
Score = 378 (138.1 bits), Expect = 8.3e-64, Sum P(3) = 8.3e-64
Identities = 111/361 (30%), Positives = 177/361 (49%)
Query: 281 SERFSAREADKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSK 340
S +F+ + +++ +L D RDA+RR D YDPRTLY+P + +KQ+WE KSK
Sbjct: 266 SSKFNKQNEERYQWL-VDERDAQRRPKSDPEYDPRTLYIPSSAWNKFTPFEKQYWEIKSK 324
Query: 341 HMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPH---CGFPERNFSMNVEKLARK 397
D ++FFK GKF+EL+E DA + DL+ G + + G PE +F + +
Sbjct: 325 MWDCIVFFKKGKFFELYEKDALLANALFDLKIAGGGRANMQLAGIPEMSFEYWAAQFIQM 384
Query: 398 GYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMA 457
GY+V V+Q E+ E+R KG +VKRE+ ++T GTLT+G++L ++ A++ +A
Sbjct: 385 GYKVAKVDQRESMLAKEMREGSKG----IVKRELQCILTSGTLTDGDMLHSDL-ATFCLA 439
Query: 458 LTES-----NQSPASQST------DRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXX 506
+ E N++ ST + FG +D AT + + +
Sbjct: 440 IREEPGNFYNETQLDSSTIVQKLNTKIFGAAFIDTATGELQMLEFEDDSECTKLDTLMSQ 499
Query: 507 XRPVEIIKPANMLSPETERAI-LRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAE 565
RP+E++ N LS + + N + N++ EF+D + T EI I++E
Sbjct: 500 VRPMEVVMERNNLSTLANKIVKFNSAPNAIFNEVKAGEEFYDCDKTYAEI------ISSE 553
Query: 566 SLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQV-LSALGGTLFYLKKSFLDETL 624
+ E D P +L S D+G +V SA GG L+YLK LD+ L
Sbjct: 554 YFS----------TEEDW----PEVLK---SYYDTGKKVGFSAFGGLLYYLKWLKLDKNL 596
Query: 625 L 625
+
Sbjct: 597 I 597
Score = 224 (83.9 bits), Expect = 8.3e-64, Sum P(3) = 8.3e-64
Identities = 59/160 (36%), Positives = 83/160 (51%)
Query: 599 DSGSQV-LSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPY-MVLDAPALEN 656
D+G +V SA GG L+YLK LD+ L+ + D K + MVLD L+N
Sbjct: 570 DTGKKVGFSAFGGLLYYLKWLKLDKNLISMKNIKEY------DFVKSQHSMVLDGITLQN 623
Query: 657 LEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGL-RGV 715
LE+F NS G GTL+ N +T GKR+++ WL PL I R D+V L + +
Sbjct: 624 LEIFSNSFDGSDKGTLFKLFNRAITPMGKRMMKKWLMHPLLRKNDIESRLDSVDSLLQDI 683
Query: 716 NQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVV 755
LE S+LPD+ER+LAR+ S ++ KV+
Sbjct: 684 TLREQLEI--TFSKLPDLERMLARIH-SRTIKVKDFEKVI 720
Score = 187 (70.9 bits), Expect = 8.3e-64, Sum P(3) = 8.3e-64
Identities = 39/149 (26%), Positives = 82/149 (55%)
Query: 810 IVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGD 869
+V +K + +AF+ +A N I+P G D+++D + +++E+E L + L RK
Sbjct: 753 LVEAVKSWTNAFERQKAINENIIVPQRGFDIEFDKSMDRIQELEDELMEILMTYRKQFKC 812
Query: 870 TSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEK 929
++I Y GK++Y +E+P S +VP ++ ++ K + RY++ ++ L +++A+
Sbjct: 813 SNIQYKDSGKEIYTIEIPISATKNVPSNWVQMAANKTYKRYYSDEVRALARSMAEAKEIH 872
Query: 930 ESALKSILQRLIGQFCEHHNK-WRQMVAA 957
++ + + RL +F H+N W + A
Sbjct: 873 KTLEEDLKNRLCQKFDAHYNTIWMPTIQA 901
Score = 56 (24.8 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 704 ERQDAV-AGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAK 762
ERQ A+ + + F +EF K++ R+ ++E L + + + SN + Y+D+ K
Sbjct: 765 ERQKAINENIIVPQRGFDIEFDKSMDRIQELEDELMEILMTYRKQFKCSN--IQYKDSGK 822
Query: 763 K 763
+
Sbjct: 823 E 823
>POMBASE|SPCC285.16c [details] [associations]
symbol:msh6 "MutS protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=ISO]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPCC285.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0006298 GO:GO:0043570
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677 EMBL:AF207839
PIR:T41262 RefSeq:NP_588344.1 ProteinModelPortal:O74502
STRING:O74502 EnsemblFungi:SPCC285.16c.1 GeneID:2539215
KEGG:spo:SPCC285.16c HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
NextBio:20800385 Uniprot:O74502
Length = 1254
Score = 383 (139.9 bits), Expect = 3.7e-62, Sum P(3) = 3.7e-62
Identities = 93/277 (33%), Positives = 145/277 (52%)
Query: 282 ERFSAREADKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKH 341
E F +++ +L D RDA + R GD YDPRTLY+PP +KQ+W+ K
Sbjct: 330 EAFKKENNERYEWL-LDVRDADQNRVGDPNYDPRTLYIPPSAWATFKPFEKQFWKIKKDL 388
Query: 342 MDKVIFFKMGKFYELFEMDAHVGAKELDLQYM-KGEQPHCGFPERNFSMNVEKLARKGYR 400
MD V+FF+ GKFYEL+E DA +G + L+ + G PE +F + KGYR
Sbjct: 389 MDTVVFFQKGKFYELYENDAAIGHQVFSLKLTDRVNMKMVGIPEASFDYWASQFIAKGYR 448
Query: 401 VLVVEQTETPEQLELRRKEKGSKD-KVVKREICAVVTKGTLTEGELLSANPDASYLMALT 459
+ V+Q ET E++ +++ K+ KVV+R + V+T GTL + +L+++ ++Y MA+
Sbjct: 449 IARVDQLETALGKEIKDRQRTQKEEKVVQRGLTQVLTSGTLVDEAMLTSDL-STYCMAIK 507
Query: 460 ESNQSPASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANML 519
ES QS + + FGIC +D +T + + RP E+I + +
Sbjct: 508 ESLQSDNEEPS---FGICFIDTSTGGFHMCEFTDDIHRTKLDTLLTQVRPKELILEKSKI 564
Query: 520 SPETERAILRHTRNPLV-NDLVPLSEFWDAETTVLEI 555
S ++ RAI + + N + P +EFWD E EI
Sbjct: 565 SQKSIRAIKYCVSSSSIWNFIKPYTEFWDNERVEREI 601
Score = 207 (77.9 bits), Expect = 3.7e-62, Sum P(3) = 3.7e-62
Identities = 56/161 (34%), Positives = 79/161 (49%)
Query: 582 DGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDM 641
+GL P IL +S +SA G +YL++ LD+ + F+ S
Sbjct: 609 NGLEGAPKILKSYLS---EKPLAISAFGALFWYLRQLKLDKDMCSMGNFDEYDAS----- 660
Query: 642 AKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGL 701
+ ++++ L+NLE+F NS G S GTL+ L CVT FGKRL TWL PL +
Sbjct: 661 QQSTSLLMNGQTLKNLEIFSNSFDGGSEGTLFHLLCRCVTPFGKRLFHTWLCHPLRSGTA 720
Query: 702 IRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFA 742
I R D V L N L +LPD+ERL++R+ A
Sbjct: 721 INARLDVVE-LIADNPVIRDTIWGFLHKLPDLERLISRVHA 760
Score = 183 (69.5 bits), Expect = 3.7e-62, Sum P(3) = 3.7e-62
Identities = 53/202 (26%), Positives = 103/202 (50%)
Query: 760 AAKKQLQEFISALHGCELMDQACSSLGA-ILENTESRQLHHILTPGKGLPAIVSILKHFK 818
A + + +F+ L G + ++ A L +E E L I+ + P + L+ +
Sbjct: 760 AGRSKPADFVRVLEGFQRINSAFDQLREEFMEVAEGTLLGEII---QSAPNMKEELEAWT 816
Query: 819 DAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIG 878
AF+W +A+ G P G + +YD++ K E++ L L++ +K L +S+ + IG
Sbjct: 817 RAFNWQKASEEGVFEPEIGFEAEYDTSQKYQSELKNELYALLEQYKKQLRCSSLNFKNIG 876
Query: 879 KDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQ 938
K++Y +EVP ++ VP ++ S K RY+ ++K + +L +AE E A+ S +Q
Sbjct: 877 KEVYQVEVPSDVK--VPVNWCKMSGTKKTNRYYNDELRKKIKKLLEAE-ELHLAIMSRMQ 933
Query: 939 -RLIGQFCEHHNKWRQMVAATA 959
+ +F ++ +W ++ TA
Sbjct: 934 EKFYIRFDSNYEQWLALIKYTA 955
Score = 37 (18.1 bits), Expect = 5.2e-25, Sum P(3) = 5.2e-25
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 379 HCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSK 423
H P+R E+ K R V ++ ++ E+++ K+K K
Sbjct: 113 HRSSPKRPHDSLGEESPGKLLRTSVKQEPDSEEEIDSPTKKKSFK 157
>UNIPROTKB|G4NEZ2 [details] [associations]
symbol:MGG_00704 "DNA mismatch repair protein msh6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CM001235
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR017261 PIRSF:PIRSF037677 RefSeq:XP_003718302.1
ProteinModelPortal:G4NEZ2 EnsemblFungi:MGG_00704T0 GeneID:2675105
KEGG:mgr:MGG_00704 Uniprot:G4NEZ2
Length = 1218
Score = 344 (126.2 bits), Expect = 1.1e-61, Sum P(3) = 1.1e-61
Identities = 99/315 (31%), Positives = 154/315 (48%)
Query: 251 DFKSPIIKPVKIFGSDKLSNGFDNPVMGDVSERFSAREA-DKFHFLGPDRRDAKRRRPGD 309
D ++P P K D ++ E+ +E D++ +L + D R P
Sbjct: 253 DPENPAPPPTKT--KDSSAHSSTQKSKPKTKEKACKKEPEDRYPWLAKIQ-DMDRHSPDH 309
Query: 310 VYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELD 369
+D T+++PP S +KQ+WE K K D V+FFK GKFYEL+E DA +G + D
Sbjct: 310 PDFDKSTIFIPPMAWNKFSPFEKQYWEIKQKLWDTVVFFKKGKFYELYENDATIGHQLFD 369
Query: 370 LQYM-KGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRK--EKGSK--D 424
L+ + G PE + + V + KGY+V V+Q E+ E+R + +K +K D
Sbjct: 370 LKLTDRVNMRMVGVPEASLDIWVNQFVAKGYKVARVDQMESALGKEMRERGGDKKNKKED 429
Query: 425 KVVKREICAVVTKGTLTEGELLSANPDASYLMALTES--NQSPASQSTDRCFGICVVDVA 482
K+++RE+ ++T GTL EG +L + A++ +A+ ES N PA FGI VD A
Sbjct: 430 KIIRRELACILTGGTLVEGSMLQDDM-ATFCVAIKESTINNHPA-------FGIAFVDAA 481
Query: 483 TSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRNPLV--NDLV 540
T + + Q P E++ + +S + R IL++ +P N L
Sbjct: 482 TGQFFISQFEDDVDLTKFETFVAQTSPRELLLEKSNISTKALR-ILKNNTSPTTIWNYLK 540
Query: 541 PLSEFWDAETTVLEI 555
P SEF D ETT E+
Sbjct: 541 PDSEFLDPETTRREL 555
Score = 241 (89.9 bits), Expect = 1.1e-61, Sum P(3) = 1.1e-61
Identities = 55/139 (39%), Positives = 81/139 (58%)
Query: 604 VLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENS 663
++SA+G + YL+ L+ +LL FE + + + +VLD +L NLEVF NS
Sbjct: 586 LMSAMGALVHYLRVLKLERSLLSQGNFEW-----YNPIHRDGTLVLDGQSLINLEVFSNS 640
Query: 664 RSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEF 723
+G GTL+ LN C+T FGKRL R W+ PL N I ER DAV L ++ +F
Sbjct: 641 VNGGPEGTLFNLLNRCITPFGKRLFRQWVCHPLCNIKKINERLDAVDMLNA-DRSILEQF 699
Query: 724 RKALSRLPDMERLLARLFA 742
+S++PD+ERL++R+ A
Sbjct: 700 SSLMSKMPDLERLISRIHA 718
Score = 186 (70.5 bits), Expect = 1.1e-61, Sum P(3) = 1.1e-61
Identities = 50/222 (22%), Positives = 104/222 (46%)
Query: 734 ERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTE 793
+R + F+S + + +++ A + ++F+ L G E ++ A S L A
Sbjct: 692 DRSILEQFSSLMSKMPDLERLISRIHAGVCKAEDFVRVLEGFEQIEYAMSMLSAF--GGG 749
Query: 794 SRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIE 853
+ + +++ + + L +K AFD + + +IP G++ D+D + + I+
Sbjct: 750 NGLVDRLIS---SMLDLKEPLTFWKSAFDRKKVRDEKLLIPERGIEEDFDESADNIVRIK 806
Query: 854 ASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTP 913
L L +Q+ L S+ + +GK++Y +E P+S + VP+D+ S+ RY+
Sbjct: 807 KDLQSLLDKQKAALKCKSLKFTDVGKEIYQIEAPKSTK--VPKDWRQMSATSAVKRYYFR 864
Query: 914 NIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMV 955
+ +L+ EL +AE +K + R +F + W Q +
Sbjct: 865 ELDELVRELQEAEETHSQIVKDVAARFFKRFDVDYAIWIQAI 906
>CGD|CAL0006305 [details] [associations]
symbol:MSH6 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032138 "single base
insertion or deletion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0006305 GO:GO:0005524 GO:GO:0006298
EMBL:AACQ01000010 EMBL:AACQ01000009 GO:GO:0030983 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
PIRSF:PIRSF037677 RefSeq:XP_722156.1 RefSeq:XP_722270.1
ProteinModelPortal:Q5AL33 STRING:Q5AL33 GeneID:3636059
GeneID:3636161 KEGG:cal:CaO19.12411 KEGG:cal:CaO19.4945
Uniprot:Q5AL33
Length = 1214
Score = 337 (123.7 bits), Expect = 6.3e-61, Sum P(3) = 6.3e-61
Identities = 89/293 (30%), Positives = 155/293 (52%)
Query: 284 FSAREADKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMD 343
F +++ +L D RDA++R YDPRTLY+P + +KQ+W+ KSK +
Sbjct: 273 FEKENEERYQWL-VDIRDAEKRPIDHPDYDPRTLYIPQSAWSKFTAFEKQYWQIKSKMWN 331
Query: 344 KVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPH---CGFPERNFSMNVEKLARKGYR 400
V+FF+ GKFYEL+E DA + + DL+ G + + G PE +F ++ GY+
Sbjct: 332 TVVFFQKGKFYELYENDAVIANTQFDLKIAGGGRANMKLAGIPEMSFEYWAKEFISHGYK 391
Query: 401 VLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTE 460
V VEQ E+ ++R ++K+++RE+ ++T GTLT +++S N A+Y +++ E
Sbjct: 392 VAKVEQKESMLVKQMRGGAT-KEEKIIERELKGILTAGTLTNLDMIS-NDMATYCLSIKE 449
Query: 461 SNQSPASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEII-KPANML 519
++ +++ FG+ VD ATS + ++ P EII + N+
Sbjct: 450 EDKEDGTKT----FGVAFVDTATSELNFIELDDDAECTKLDTLITQINPKEIICEKGNLC 505
Query: 520 SPETERAILR---HTRNPLVNDLVPLSEFWDAETTVLE-IKNIYNRITAESLN 568
T+ IL+ H+ + + N L P++EFWD + + + +K Y AE+L+
Sbjct: 506 QIATK--ILKFCTHSDHQIWNALNPITEFWDYDIALEQLVKAKY--YDAENLD 554
Score = 215 (80.7 bits), Expect = 6.3e-61, Sum P(3) = 6.3e-61
Identities = 54/197 (27%), Positives = 100/197 (50%)
Query: 764 QLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLP-AIVSILKHFKDAFD 822
+ ++F+ + E + S L N ES L+ L K P + +++ ++DAFD
Sbjct: 711 KFRDFLKVIESFESIAGVSSKL-VDFTNVESGMLYKYL---KSFPHEMRELIQQWEDAFD 766
Query: 823 WVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLY 882
+A N I+P G D ++D++ +++++ L K LKE ++ I Y GK++Y
Sbjct: 767 REQAKND-IIVPSAGTDEEFDNSQASMEDLKTQLDKLLKEYKRTYKSQEICYRDSGKEIY 825
Query: 883 LLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIG 942
L+EVP L+ VP D++ S RY++P ++ L EL + + ++ R+
Sbjct: 826 LIEVPFKLK--VPGDWKQMGSTSKVKRYYSPEVETLAKELRGQQELHKMVCDTLKIRMYE 883
Query: 943 QFCEHHNKWRQMVAATA 959
+F +H+N W Q++ A
Sbjct: 884 KFDKHYNVWMQVIQTIA 900
Score = 212 (79.7 bits), Expect = 6.3e-61, Sum P(3) = 6.3e-61
Identities = 68/234 (29%), Positives = 110/234 (47%)
Query: 544 EFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQ 603
+ W+A + E + Y+ I E L KA A + D + P +L + ++
Sbjct: 521 QIWNALNPITEFWD-YD-IALEQLVKAKYYDAENL---DDYSNYPKVL---VDFKENHQV 572
Query: 604 VLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENS 663
+A GG L+YLK LD +++ S + A +M+LD L NLE+ N+
Sbjct: 573 AFNAFGGLLYYLKMLKLDTSIMSLGNIHEYHISR--NSAS--HMILDGVTLNNLEILNNT 628
Query: 664 RSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEF 723
G + GTL+ +N T+FGKR L+ W+ PL+ I +R D+V L
Sbjct: 629 SDGTTKGTLFKLVNRATTSFGKRQLQKWVLHPLFKVDEINQRYDSVDYLMNDGLELRSIL 688
Query: 724 RKALSRLPDMERLLARLFASSEANGRNSNKVV-LYEDAA--KKQLQEFISALHG 774
+ L+ +PD+ERLLAR+ + R+ KV+ +E A +L +F + G
Sbjct: 689 QDTLANIPDLERLLARVHGGT-LKFRDFLKVIESFESIAGVSSKLVDFTNVESG 741
>UNIPROTKB|Q5VR41 [details] [associations]
symbol:OJ1174_D05.15 "Os01g0180600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 EMBL:AP008207 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR015536 PANTHER:PTHR11361:SF31
HOGENOM:HOG000030287 ProtClustDB:CLSN2680110 EMBL:AP003047
EMBL:AP003118 RefSeq:NP_001042208.1 UniGene:Os.74356 STRING:Q5VR41
EnsemblPlants:LOC_Os01g08540.1 GeneID:4325353 KEGG:osa:4325353
OMA:KFYELYD Uniprot:Q5VR41
Length = 1224
Score = 402 (146.6 bits), Expect = 5.4e-51, Sum P(4) = 5.4e-51
Identities = 112/328 (34%), Positives = 165/328 (50%)
Query: 274 NPVMGDVSERFSAREADKFHFLGPDR-RDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQK 332
+PV V + + KF +L P RDA RRR D YD TL++PPD LR +S QK
Sbjct: 349 SPVENKVHDEMAESARSKFEWLNPSNIRDANRRRLADPLYDKTTLFIPPDALRKMSTSQK 408
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHC---GFPERNFSM 389
Q+W K K+MD V+FFK+GKFYEL+E+DA +G KELD + C G E +
Sbjct: 409 QYWNIKCKYMDVVLFFKVGKFYELYEVDAEIGQKELDWKMTISGVGKCRQVGISESGIDV 468
Query: 390 NVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSAN 449
VEKL +GY+V +EQ E+ +Q K +GS + V+ R++ V T T+ + +
Sbjct: 469 AVEKLLARGYKVGRIEQMESADQA----KSRGS-NSVILRKLVHVSTPSTVGDSNI---G 520
Query: 450 PDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRP 509
DA +L++L E AS + R +G +D A +I +G V P
Sbjct: 521 ADAVHLLSLKEITL--ASNGS-RVYGFAFLDYAALKIWVGSVHDDDTFAALGALLVQVSP 577
Query: 510 VEIIKPANMLSPETERAILRHTRNPLVN-DLVPLSEFWDAETTVLEIKNIYN-RITAESL 567
EII + LS ET R I ++ V L PL + ++ V EI+ + + R ++
Sbjct: 578 KEIIYETSGLSKETHRLIKKYASAGSVKMQLTPLYGLYFSD--VSEIQTLIDSRGYFKAS 635
Query: 568 NKADSNVANSQAEGDGLTC-LPGILSEL 594
+ + NS D + C L G++S L
Sbjct: 636 TSSWLSALNSSVNKDAVICALGGLVSHL 663
Score = 222 (83.2 bits), Expect = 5.4e-51, Sum P(4) = 5.4e-51
Identities = 76/239 (31%), Positives = 120/239 (50%)
Query: 591 LSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLD 650
LS L S+ + + V+ ALGG + +L + L++ L E+L + + + +D
Sbjct: 640 LSALNSSVNKDA-VICALGGLVSHLTRLMLEDAL---KNGEVLAYHVY-----RTCLRMD 690
Query: 651 APALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVA 710
L NLE+F N+ G SSGTLY LNHC+T GKRLLR W+ PL + I ER D V
Sbjct: 691 GQTLVNLEIFSNNFDGGSSGTLYKHLNHCITPCGKRLLRRWICHPLKDIDAINERLDIVE 750
Query: 711 GLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLY--EDAAKKQLQEF 768
G N + L ++PD+ERLL R+ ++ G +S ++ + E K++++ F
Sbjct: 751 GFIQ-NCGLGSVTLEHLRKVPDLERLLGRVKSTV---GLSSAVLLPFVGEKILKRRIKTF 806
Query: 769 ISALHGCELMDQACSSLGAILENTESRQLHHI--LTPGKGLPAIVSI---LKHFKDAFD 822
+ G + G L + RQ H I L+ +P + S+ + HF++A D
Sbjct: 807 GMLVKGLRV--------GIDLLDILQRQDHGISALSKAVDIPTLSSLGELIHHFEEAID 857
Score = 44 (20.5 bits), Expect = 5.4e-51, Sum P(4) = 5.4e-51
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 269 SNGFDNPVMGDVSERFSAREADKFHFLGPD 298
S G D P+ S++ + KF F+ P+
Sbjct: 191 SRGADTPLTESDSDQTPLQHPSKFSFVSPN 220
Score = 39 (18.8 bits), Expect = 5.4e-51, Sum P(4) = 5.4e-51
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 888 ESLRGSVPRDYELRSSKKGFFRY 910
ES+ G VP D L + G R+
Sbjct: 944 ESVNGLVPNDLSLGQNLSGQNRF 966
>TAIR|locus:1005716529 [details] [associations]
symbol:MSH7 "AT3G24495" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP
catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
[GO:0006260 "DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0007067 "mitosis" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0034968 "histone
lysine methylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009411 GO:GO:0003684 EMBL:AB020746
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR015536 PANTHER:PTHR11361:SF31 EMBL:AJ007792
EMBL:AF193018 EMBL:AF009657 IPI:IPI00538811 RefSeq:NP_850630.1
UniGene:At.6244 ProteinModelPortal:Q9SMV7 SMR:Q9SMV7 STRING:Q9SMV7
PaxDb:Q9SMV7 PRIDE:Q9SMV7 EnsemblPlants:AT3G24495.1 GeneID:822040
KEGG:ath:AT3G24495 GeneFarm:5083 TAIR:At3g24495
HOGENOM:HOG000030287 InParanoid:Q9SMV7 OMA:ELDEWRM PhylomeDB:Q9SMV7
ProtClustDB:CLSN2680110 Genevestigator:Q9SMV7 GermOnline:AT3G24495
Uniprot:Q9SMV7
Length = 1109
Score = 413 (150.4 bits), Expect = 1.1e-49, Sum P(2) = 1.1e-49
Identities = 107/327 (32%), Positives = 162/327 (49%)
Query: 260 VKIFGSDKLSNGFDNPVMGDVSERFSAREADKFHFLGPDR-RDAKRRRPGDVYYDPRTLY 318
V + S+K +PV G+ E E KF +L R RDA RRRP D YD +TL+
Sbjct: 202 VPVLDSNKRLKMLQDPVCGEKKE---VNEGTKFEWLESSRIRDANRRRPDDPLYDRKTLH 258
Query: 319 LPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQP 378
+PPD + +S QKQ+W KS++MD V+FFK+GKFYEL+E+DA +G KELD +
Sbjct: 259 IPPDVFKKMSASQKQYWSVKSEYMDIVLFFKVGKFYELYELDAELGHKELDWKMTMSGVG 318
Query: 379 HC---GFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVV 435
C G E V+KL +GY+V +EQ ET +Q K +G+ + ++ R++ V+
Sbjct: 319 KCRQVGISESGIDEAVQKLLARGYKVGRIEQLETSDQA----KARGA-NTIIPRKLVQVL 373
Query: 436 TKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMXXX 495
T T +EG + PDA +L+A+ E ST +G VD A R +G +
Sbjct: 374 TPSTASEGNI---GPDAVHLLAIKEIKMELQKCST--VYGFAFVDCAALRFWVGSISDDA 428
Query: 496 XXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHT-RNPLVNDLVPLSEFWDAETTVLE 554
P E++ + LS E ++A+ ++T L P+ + +T
Sbjct: 429 SCAALGALLMQVSPKEVLYDSKGLSREAQKALRKYTLTGSTAVQLAPVPQVM-GDTDAAG 487
Query: 555 IKNIYNRITAESLNKADSNVANSQAEG 581
++NI I + K S N +G
Sbjct: 488 VRNI---IESNGYFKGSSESWNCAVDG 511
Score = 190 (71.9 bits), Expect = 1.1e-49, Sum P(2) = 1.1e-49
Identities = 53/163 (32%), Positives = 83/163 (50%)
Query: 618 SFLDETLLRFAKFELLPCSGFGDMAKKPYMV------LDAPALENLEVFENSRSGDSSGT 671
S L E + ++ +L GD+ PY V +D + NLE+F NS G SGT
Sbjct: 520 SALGELINHLSRLKLEDVLKHGDIF--PYQVYRGCLRIDGQTMVNLEIFNNSCDGGPSGT 577
Query: 672 LYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLP 731
LY L++CV+ GKRLLR W+ PL + I +R D V ++ + + L +LP
Sbjct: 578 LYKYLDNCVSPTGKRLLRNWICHPLKDVESINKRLDVVEEFTANSESMQIT-GQYLHKLP 636
Query: 732 DMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHG 774
D+ERLL R+ SS + + +L + K++++ F + G
Sbjct: 637 DLERLLGRI-KSSVRSSASVLPALLGKKVLKQRVKAFGQIVKG 678
Score = 43 (20.2 bits), Expect = 3.0e-34, Sum P(2) = 3.0e-34
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 906 GFFRYWTPNIKKLLGELSQAESEKESALKSILQRLI 941
G + + P++++LLG + + S L ++L + +
Sbjct: 629 GQYLHKLPDLERLLGRIKSSVRSSASVLPALLGKKV 664
>UNIPROTKB|Q7S4J6 [details] [associations]
symbol:NCU08135 "DNA mismatch repair protein msh6"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
PIRSF:PIRSF037677 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
EMBL:AABX02000052 RefSeq:XP_959678.2 UniGene:Ncr.20761
ProteinModelPortal:Q7S4J6 STRING:Q7S4J6
EnsemblFungi:EFNCRT00000008326 GeneID:3875816 KEGG:ncr:NCU08135
Uniprot:Q7S4J6
Length = 1237
Score = 377 (137.8 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 94/273 (34%), Positives = 143/273 (52%)
Query: 290 DKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFK 349
+++ +L D +DA R RPG YDP ++Y+PP R S + Q+WE K D V+FFK
Sbjct: 314 ERYPWLA-DIQDANRNRPGHPDYDPGSVYVPPSAWRQFSPFETQYWEIKKNLWDTVVFFK 372
Query: 350 MGKFYELFEMDAHVGAKELDLQYM-KGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTE 408
GKFYEL+E DA +G + DL+ + G PE + M V + KGY+V V+Q E
Sbjct: 373 KGKFYELYENDATIGHQLFDLKLTDRVNMRMVGVPESSLDMWVNQFVAKGYKVARVDQME 432
Query: 409 TPEQLELRRKEKGSK--DKVVKREICAVVTKGTLTEGELLSANPDASYLMALTES--NQS 464
+ E+R ++ +K DK+++RE+ ++T GTL +G +L + +A Y A+ ES +
Sbjct: 433 SALGKEMRERDTKAKKADKIIRRELTCILTGGTLVDGSMLQ-DDNAVYCAAIKESVVDDK 491
Query: 465 PASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETE 524
PA FGI VD AT + + + P E+I + LS +
Sbjct: 492 PA-------FGIAFVDAATGQFFISEFEDDVDLTKFETFVAQTSPRELILEKSHLSTKAL 544
Query: 525 RAILRHTRNPLV--NDLVPLSEFWDAETTVLEI 555
R IL++ +P N L P +EFWDA+ E+
Sbjct: 545 R-ILKNNTSPTTIWNYLKPGTEFWDADVARREL 576
Score = 229 (85.7 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 51/141 (36%), Positives = 79/141 (56%)
Query: 604 VLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENS 663
++SALG YL+ L+ LL F + + + + ++LD +L NLE+F N+
Sbjct: 605 LMSALGALTQYLRMLKLERNLLSQGNF-----AWYNPIHRNGTLILDGQSLINLEIFANT 659
Query: 664 RSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEF 723
+G GTL+ LN C+T FGKRL R W+ PL N + ER DAV L + +F
Sbjct: 660 ANGGPEGTLFHLLNRCITPFGKRLFRQWVCHPLCNIQKLNERLDAVDMLND-DHSLREQF 718
Query: 724 RKALSRLPDMERLLARLFASS 744
+S++PD+ERL++R+ A +
Sbjct: 719 SSQMSKMPDLERLISRIHAGA 739
Score = 182 (69.1 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 51/230 (22%), Positives = 108/230 (46%)
Query: 726 ALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSL 785
A+ L D + L F+S + + +++ A + ++F+ L G E +D+ L
Sbjct: 704 AVDMLND-DHSLREQFSSQMSKMPDLERLISRIHAGACRPEDFVKVLEGFEQIDRTMELL 762
Query: 786 GAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSA 845
+ + + ++ +P + L ++K AFD A + +IP G++ D+D +
Sbjct: 763 ESY--GGGNGLVDRLIA---SMPDLKEPLGYWKTAFDRKRARDDKLLIPEPGIEEDFDRS 817
Query: 846 CKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKK 905
++ I+ L + L+ Q+ L + + +GK++Y +EVP++++ VP + S+
Sbjct: 818 QAELDRIKGELQELLERQKTALRCKTAKFTDVGKEVYQIEVPKTVK--VPPKWRQMSATS 875
Query: 906 GFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMV 955
RY+ ++ L+ EL +AE +K + R +F + W Q +
Sbjct: 876 AVKRYYFKELEDLVRELQEAEETHSQIVKEVASRFFKRFDLDYETWLQAI 925
Score = 38 (18.4 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 950 KWRQMVAATA 959
KWRQM A +A
Sbjct: 867 KWRQMSATSA 876
>UNIPROTKB|Q23AD6 [details] [associations]
symbol:TTHERM_00426230 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009411 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:GG662724 RefSeq:XP_001013801.1
UniGene:Tth.12031 ProteinModelPortal:Q23AD6
EnsemblProtists:EAR93556 GeneID:7834338 KEGG:tet:TTHERM_00426230
ProtClustDB:CLSZ2445539 Uniprot:Q23AD6
Length = 1139
Score = 304 (112.1 bits), Expect = 1.0e-46, Sum P(3) = 1.0e-46
Identities = 66/166 (39%), Positives = 95/166 (57%)
Query: 299 RRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFE 358
R+D+++ G+ YDP TLY+PP L+ KQ+W+ K+KH DK+I FKMGKFYELF
Sbjct: 197 RKDSRQIPFGNPQYDPTTLYIPPQEFSKLTSAMKQYWQIKAKHFDKIILFKMGKFYELFY 256
Query: 359 MDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRK 418
DA + + LD+ + E HCGFPE+ KL + GY+V+VVEQT
Sbjct: 257 EDAIIATRLLDITFTNKEL-HCGFPEKALEKFASKLVQFGYKVVVVEQTS---------- 305
Query: 419 EKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTE-SNQ 463
K + +V R+I ++TKGT+ N D YL+ + + +NQ
Sbjct: 306 -KKTTTGIVDRDITQIITKGTINF-TFEEQNHDPKYLLVIRQKTNQ 349
Score = 288 (106.4 bits), Expect = 1.0e-46, Sum P(3) = 1.0e-46
Identities = 119/498 (23%), Positives = 228/498 (45%)
Query: 468 QSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEII-KPANMLSPETERA 526
Q T++ FGI V + TS+I +G + +P EI+ P N+ S
Sbjct: 345 QKTNQEFGIIVYESFTSKIQVGLLQDDKTQTRLKSFLCVTKPQEIVYDPGNITSD----- 399
Query: 527 ILRHTRNPLVNDLV-PLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLT 585
IL+ ++ ++ P+ + D +T L I + +E + K + + + +
Sbjct: 400 ILKILKSQYFQSVMSPMRDNKDQWSTQLATFYIEKQFGSE-VQKYPQELRDIRTNDE--- 455
Query: 586 CLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKP 645
I ++I+ +AL G Y+ + E++L +++ + C F +
Sbjct: 456 ----IRGQVINLK------YAALAGFFSYMDSTLQLESILNSSEY--VECD-FDNKQFSQ 502
Query: 646 YMVLDAPALENLEVFENSRSG---------DSSGTLYAQLNHCVTAFGKRLLRTWLARPL 696
M+LD+ AL++LE+FENS++ GTL L++ T +GKR+L+ W+ PL
Sbjct: 503 RMILDSQALQHLEIFENSQTALTTTFQQVDQKKGTLLNYLDYTKTPYGKRMLKKWVCSPL 562
Query: 697 YNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVL 756
+ I +R DA+ ++ N +F+ ++R D+ERL + ++ S +++ K V+
Sbjct: 563 IDISAINDRYDAIEDIQN-NLAMKDKFQYGIARYADIERLCSSIYRYS-VKQKHAEKAVM 620
Query: 757 YEDAAKKQLQEFISALHGCELMDQACSSLGAI-LENTESRQLHHILTPG-KG-------L 807
YE+ + +L+EF + ++ + +++ + EN +S++L + T KG L
Sbjct: 621 YENISSARLKEFKNLINSMKEIEKLIEETFMVNQENFKSQRLKRLCTYRLKGDPKLSGDL 680
Query: 808 PAIVSILKHFKD--AFDWVEANNSGRII----PHGGVDMDYDSACKKVKEIEASLTKHLK 861
P + S +K +D D E +G+ I P G +YDS ++K + L ++L+
Sbjct: 681 PKVSSFIKVLEDIIVLDSKE-KIAGKYIEQPVPKDGFCQEYDSIRLQIKAYQDELDQYLE 739
Query: 862 EQRKLLGDTSITYVTIGKDLYLLEVPESLRGSV--PRDYELRSSKKGFFRYWTPNIKKLL 919
+ + I+Y + Y ++V ++L + P D+ L+S F R+ + +
Sbjct: 740 QLKVKFKTNDISYAFLNNRQYDIQVNKTLFDKIQKPADFSLQSHSGSFQRFTS----RFT 795
Query: 920 GELSQAESEKESALKSIL 937
E E E LK IL
Sbjct: 796 SEKVAFIEELEEQLKEIL 813
Score = 37 (18.1 bits), Expect = 1.0e-46, Sum P(3) = 1.0e-46
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 899 ELRSSKK-GFFR---YWTPNIKKLLGELSQAESEKESALKSILQRLIG 942
ELR K+ F+ Y+ KKL+ + + ES+ L +++G
Sbjct: 1042 ELRFYKEISFYHMEYYYDNKSKKLIFKYKLKQGNAESSFGIDLAKIVG 1089
>UNIPROTKB|Q23K54 [details] [associations]
symbol:TTHERM_00194810 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
EMBL:GG662673 ProtClustDB:CLSZ2445539 RefSeq:XP_001017234.1
UniGene:Tth.3690 ProteinModelPortal:Q23K54 EnsemblProtists:EAR96989
GeneID:7830572 KEGG:tet:TTHERM_00194810 Uniprot:Q23K54
Length = 1232
Score = 380 (138.8 bits), Expect = 4.5e-42, Sum P(2) = 4.5e-42
Identities = 92/287 (32%), Positives = 146/287 (50%)
Query: 293 HFLGPDRR-DAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMG 351
+F P+ D+K+R+ D YDP TLY+PP+ L+ + +Q+WE KS + DK++FFK+G
Sbjct: 230 YFALPENAMDSKKRKRTDPNYDPTTLYVPPESLKQFTPVMRQYWEIKSTNFDKILFFKLG 289
Query: 352 KFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPE 411
KFYELF DA + KELDL +M G++ H GFPE+ KL GY+V V EQTETPE
Sbjct: 290 KFYELFYEDALITHKELDLNWM-GKKMHTGFPEKALDKMASKLISLGYKVAVAEQTETPE 348
Query: 412 QLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTD 471
Q++ R + S K V RE+ V+TKGT + P YLM+L
Sbjct: 349 QMKQRLMREKSGPKCVSRELVQVMTKGTYDQNNETDYQP--RYLMSLRNFQTK------- 399
Query: 472 RCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHT 531
FGI +V+ +T+ I + + +P EI+ + ++ + ++ I
Sbjct: 400 --FGIIIVESSTNVITVAYLNDDIHFTQFKTLLCQVKPQEIVYDPDNMTHDIKKIIQSGY 457
Query: 532 RNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQ 578
P ++ L ++ W+ + + + K +N+ N++
Sbjct: 458 LAPQLSPLQNKNDNWNKGMAYNHLDKTHGDVLEGKWPKLLNNLYNTE 504
Score = 193 (73.0 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 77/344 (22%), Positives = 156/344 (45%)
Query: 474 FGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRN 533
FGI +V+ +T+ I + + +P EI+ + ++ + ++ I
Sbjct: 400 FGIIIVESSTNVITVAYLNDDIHFTQFKTLLCQVKPQEIVYDPDNMTHDIKKIIQSGYLA 459
Query: 534 PLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSE 593
P ++ L ++ W+ YN L+K +V EG P +L+
Sbjct: 460 PQLSPLQNKNDNWNKGMA-------YNH-----LDKTHGDVL----EGKW----PKLLNN 499
Query: 594 LISTGDSGSQVL-SALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAP 652
L +T ++ ++ ++ G YLK + + ++ A++++ + + M+LD+
Sbjct: 500 LYNTEETKRDLIFESMAGLFNYLKSILILDQVISVARYQIYDI----EKGVRSCMILDSQ 555
Query: 653 ALENLEVFENSRSGDSS------------GTLYAQLNHCVTAFGKRLLRTWLARPLYNSG 700
+L++LE+ ++S SG S G+L +N T FG R+L+ W+ PL +
Sbjct: 556 SLQHLEILDSS-SGPVSTQKENYKLHFDDGSLLGYINKTKTPFGYRMLKNWICAPLMDIN 614
Query: 701 LIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDA 760
I +R DA+ L+ N F + + +LPD+E++ R++ S +N N VV +ED
Sbjct: 615 KIYDRYDAIEDLQKFNSERDT-FLRGIEKLPDLEKMCGRIYKYS-IRQQNQN-VVYFEDF 671
Query: 761 AKKQLQEFISALHGCELMDQACSS-LGAILENTESRQLHHILTP 803
+ +L+EF ++ + L + +S++L ++TP
Sbjct: 672 SYSRLKEFKDLTTKLAESEKLIKTHLTPFADQFKSKRLRKLVTP 715
Score = 154 (59.3 bits), Expect = 4.5e-42, Sum P(2) = 4.5e-42
Identities = 58/268 (21%), Positives = 116/268 (43%)
Query: 702 IRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLL-------ARLFASSEANGRNSNKV 754
IR++ V + EF+ ++L + E+L+ A F S +
Sbjct: 658 IRQQNQNVVYFEDFSYSRLKEFKDLTTKLAESEKLIKTHLTPFADQFKSKRLRKLVTPNT 717
Query: 755 VLYEDAAKKQLQEFISALHGC----ELMDQACSSLGAILENTESRQLHHILTPGKGL-PA 809
+ +ED + +L I HG + +++ + A E E + GL P
Sbjct: 718 IDHEDEEEYELPAMI--YHGYSDEEDEVEENINQHAAKAEKMEIENKQSKKSKSSGLLPP 775
Query: 810 IVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGD 869
++ F++ W + +P G+ YD A + V+ +E L +L + ++ + D
Sbjct: 776 ASKYIQEFQNYIVWQGPKGQEKPLPKKGLVNSYDLATEAVQNVEKKLQNYLVQIQQQMKD 835
Query: 870 TSITYVTIGKDLYLLEVPESL-RGSV-PRDYELRSSKKGFFRYWTPNIKKLLGELSQAES 927
+I Y G Y LE+ E L +G+ P++++ S + R+ T +++L+ EL +AE
Sbjct: 836 KTIKY---GLR-YELEINEDLVKGNKKPKNFDFTSKAGKYQRFQTKELRELIAELDEAED 891
Query: 928 EKESALKSILQRLIGQFCEHHNKWRQMV 955
++ LK + + +F E + W ++
Sbjct: 892 VQKKELKEFCRFIFKEFYESYKTWDTLI 919
Score = 37 (18.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 408 ETPEQLELRRKEKGSKDKV-VKR 429
++ E+++ +RK+K S+ K VK+
Sbjct: 147 DSDEEVKPKRKQKQSQQKTPVKK 169
Score = 37 (18.1 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 616 KKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLD 650
KKS ++ + A+ E + C D+A+ LD
Sbjct: 191 KKSATKQSTAKKAEDEFINCDQENDLARAAVDQLD 225
>UNIPROTKB|Q74ZT2 [details] [associations]
symbol:AGOS_AGR116W "AGR116Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:AE016820 GenomeReviews:AE016820_GR GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261 PIRSF:PIRSF037677
HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5 RefSeq:NP_986782.2
STRING:Q74ZT2 EnsemblFungi:AAS54606 GeneID:4623084
KEGG:ago:AGOS_AGR116W Uniprot:Q74ZT2
Length = 1167
Score = 345 (126.5 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 106/363 (29%), Positives = 170/363 (46%)
Query: 284 FSAREADKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMD 343
FS +++ +L D RDA R P D YDPRTL++P + +KQ+W+ KSK D
Sbjct: 198 FSKNNEERYQWL-VDERDAAGRPPSDPEYDPRTLHIPAQAWARFTPFEKQYWQIKSKMWD 256
Query: 344 KVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPH---CGFPERNFSMNVEKLARKGYR 400
++FFK GKF+EL+E DAH+ + DL+ G + + G PE +F + + GY+
Sbjct: 257 CIVFFKKGKFFELYEKDAHLANQLFDLKIAGGGRANMQLAGIPEMSFDYWASQFIQHGYK 316
Query: 401 VLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTE 460
V V+Q E+ E+R KG +V+RE+ V++ GTLT+ ++L ++ ++Y +++ E
Sbjct: 317 VAKVDQKESMLAKEMREGNKG----IVERELQCVLSGGTLTDLKMLHSD-QSTYCLSIHE 371
Query: 461 SNQS-----------PASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRP 509
+ + P +Q R FG +D AT RI L + RP
Sbjct: 372 APLALYAMERGEAVPPEAQQQGRLFGTAFIDTATGRICLLEFEDDSECTQLDTLMAQVRP 431
Query: 510 VEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNK 569
E++ LS + + +++ + + +EF+D T E+ N
Sbjct: 432 KEVVMEKRNLSVIAHKIVKFNSQPDCIFNYRTSAEFYDYARTFDEVSN------------ 479
Query: 570 ADSNVANSQAEGDGLTCLPGILSELISTGDSGSQV-LSALGGTLFYLKKSFLDETLLRFA 628
A G+ P IL + D G +V SA GG L YL+ LD++LL
Sbjct: 480 -GGYFA-------GMDSWPAILKQYY---DQGKKVGFSAFGGLLSYLQWLKLDKSLLSMG 528
Query: 629 KFE 631
E
Sbjct: 529 MVE 531
Score = 233 (87.1 bits), Expect = 4.1e-29, Sum P(2) = 4.1e-29
Identities = 77/225 (34%), Positives = 113/225 (50%)
Query: 558 IYN-RITAESLNKADS--NVANSQAEGDGLTCLPGILSELISTGDSGSQV-LSALGGTLF 613
I+N R +AE + A + V+N G+ P IL + D G +V SA GG L
Sbjct: 458 IFNYRTSAEFYDYARTFDEVSNGGYFA-GMDSWPAILKQYY---DQGKKVGFSAFGGLLS 513
Query: 614 YLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLY 673
YL+ LD++LL E + + + +VLD L+NLE+F NS G GTL+
Sbjct: 514 YLQWLKLDKSLLSMGMVE-----EYNPLKAQTSLVLDGITLQNLEIFANSFDGTDKGTLF 568
Query: 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDM 733
+N +T GKR +RTW+ PL I ER D+V L P +L+ LPD+
Sbjct: 569 KLVNRAITPMGKRQMRTWVMHPLLRKEHIEERLDSVDQLLN-EMPIRDLLESSLTGLPDL 627
Query: 734 ERLLARLFASSEANGRNSNKVVL-YEDAAKKQLQEFISALHGCEL 777
ERLLAR+ S ++ +KV+ +E+ + IS+L+ EL
Sbjct: 628 ERLLARVH-SGNLPIKDFDKVICGFENIVR-----LISSLNEYEL 666
Score = 183 (69.5 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 53/183 (28%), Positives = 94/183 (51%)
Query: 765 LQEFISALHGCELMDQACSSLGAI-LENTESRQLHHILTPGKGLPAIVSILKHFKDAFDW 823
+++F + G E + + SSL L + SR LH I P + S ++ + +D
Sbjct: 641 IKDFDKVICGFENIVRLISSLNEYELSGSLSRFLHDI--PS----TLKSDVESWTTLYDR 694
Query: 824 VEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYL 883
A + G+++P+ GV+ D+D + K++ +E L L E ++ + I Y GK+LY
Sbjct: 695 NMAVSEGKVVPNAGVEPDFDVSLSKMRALEEELDAVLSEYKRSFKCSKIQYKDSGKELYT 754
Query: 884 LEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQA-ESEK--ESALKSILQRL 940
+E+P S+ SVP ++ + K RY++P ++KL +++A E K E LK L +
Sbjct: 755 IELPISIAKSVPSNWTQLGANKSTKRYYSPKVQKLARSMAEARELHKILEEGLKGRLYQK 814
Query: 941 IGQ 943
Q
Sbjct: 815 FDQ 817
>ZFIN|ZDB-GENE-060526-307 [details] [associations]
symbol:msh3 "mutS homolog 3 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-060526-307 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GeneTree:ENSGT00550000074949
EMBL:CR381619 IPI:IPI00805026 Ensembl:ENSDART00000092285
Uniprot:F1QCN5
Length = 950
Score = 297 (109.6 bits), Expect = 3.1e-29, Sum P(2) = 3.1e-29
Identities = 124/434 (28%), Positives = 198/434 (45%)
Query: 331 QKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSM 389
++Q+ E K +H+D V+ + G Y F DA + AKEL++ ++ P +
Sbjct: 192 EEQYMEIKKQHVDTVLCVECGYKYRFFGEDAEIAAKELNITCHLDHNFMTASIPTHRLFV 251
Query: 390 NVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSAN 449
+V +L +GY+V VV+QTET + +K + R++ A+ TK TL GE N
Sbjct: 252 HVRRLVSQGYKVGVVKQTETTAI----KASSANKSSLFSRQLHALYTKSTLV-GE--DVN 304
Query: 450 PDASYLMALTESNQSP-ASQSTDRCFGICV---VDVATSRIILGQVMXXXXXXXXXXXXX 505
P L+ L + Q+ Q + + +CV D + + +G V+
Sbjct: 305 P----LLKLGDLEQAEDVVQDSGNNYLMCVSESFDKQSKELTVGMVVVQPSIGDVM---- 356
Query: 506 XXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAE 565
V+ K NM E E ILR P V LVP S+ +ETT ++NI A
Sbjct: 357 ----VDCFKD-NMSHSELESRILRI--QP-VEILVP-SDL--SETTERLLRNI-----AL 400
Query: 566 SLNKADSNVANSQAEG---DGLTCLPGILSELISTG--------DSGS-QVLSALGGTLF 613
S +AD + + E + T L I+ + G + GS + L +
Sbjct: 401 SSVQADDRIRIEKRESAMFEYPTAL-SIIKDFYRGGPHSAARNHEKGSYSICMGLESPII 459
Query: 614 YLKKSFLDETLLRFAKFELLPCSG-FGDMAKKP-YMVLDAPALENLEVFENSRSGDSSGT 671
+ + L F ++L CS F ++ P +M+L A ++NLE+ N +G G+
Sbjct: 460 CCLGPVI-QYLTEFKLEKILLCSSSFKRLSSDPDHMLLSAATMKNLEILCNQTTGSVKGS 518
Query: 672 LYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLP 731
L L+H T FGKRLLR W+++PL + I+ RQ+AVA + + L+RLP
Sbjct: 519 LLWVLDHTQTLFGKRLLRKWVSQPLKSVIDIQARQEAVAEILSSESSVLPSIQSLLTRLP 578
Query: 732 DMERLLARLFASSE 745
D+ER L ++ E
Sbjct: 579 DLERGLCSIYHKRE 592
Score = 115 (45.5 bits), Expect = 3.1e-29, Sum P(2) = 3.1e-29
Identities = 34/95 (35%), Positives = 49/95 (51%)
Query: 838 VDM-DYDSACKKVKEIEASLT---KHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGS 893
VD+ D+ K +EIE+ L +H +E R LL + S+ Y T+ +L+EV S+
Sbjct: 659 VDLTDFPVIRKTKEEIESVLLDIMEHRREVRLLLKNPSLDYTTVSGQQFLIEVKNSMLSI 718
Query: 894 VPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESE 928
VP D+ SS K F RY TP I + L Q +
Sbjct: 719 VPADWVKISSTKVFGRYHTPFIVEKHRRLQQLREQ 753
>UNIPROTKB|F1RF09 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:CU927965
EMBL:CU928503 Ensembl:ENSSSCT00000015430 Uniprot:F1RF09
Length = 1126
Score = 294 (108.6 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 108/426 (25%), Positives = 184/426 (43%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSMNV 391
Q+ E K + D ++ + G Y F DA + A+EL++ ++ P ++V
Sbjct: 223 QYLEMKQQQKDAILCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHV 282
Query: 392 EKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE----LL- 446
+L KGY+V VV+QTET + +K V R++ A+ TK TL GE L+
Sbjct: 283 RRLVAKGYKVGVVKQTETAALKAIG----DNKSSVFSRKLTALYTKSTLI-GEDVNPLVK 337
Query: 447 ---SANPD-------ASYLMALTESNQSPASQSTDRCF-GICVVDVATSRIILGQVMXXX 495
+ N D SYL+ L E+ ++ + F GI V AT ++
Sbjct: 338 LDDAVNVDEIMTDTSTSYLLCLCENKENVKDRKKGNIFIGIVGVQPATGEVVFDSFQDSA 397
Query: 496 XXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEI 555
+PVE++ P+++ P TE I R T + +D + + + E
Sbjct: 398 SRSELETRILCLQPVELLLPSDLSEP-TEMLIHRATAVSVRDDRIRVERM---DNMYFEY 453
Query: 556 KNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYL 615
+ + +T A + G L GI+ V+ +L + YL
Sbjct: 454 SHAFQEVT--------EFYAKDIVDNKGSQSLSGIIK-------LEKPVICSLAAIIRYL 498
Query: 616 KKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQ 675
K+ L++ L + F+ L G+M +M ++ L NLE+ +N + G+L+
Sbjct: 499 KEFNLEKVLSKPKNFKQLS----GEME---FMTINGTTLRNLEILQNQTDMKTKGSLFWV 551
Query: 676 LNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMER 735
L+H T+FG+R L+ W+ +PL I R DAV+ + + L +LPD+ER
Sbjct: 552 LDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVVHSESSVFGQIESHLRKLPDIER 611
Query: 736 LLARLF 741
L ++
Sbjct: 612 GLCSIY 617
Score = 113 (44.8 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 56/245 (22%), Positives = 104/245 (42%)
Query: 715 VNQPFALEFRKALSRLPDMERLL---ARLFASSEANGRNSNKVV--LYEDAAKK-QLQEF 768
V QP L+ R+ +RL + ++ + +F E++ R + L KK QEF
Sbjct: 568 VTQPL-LKLREINARLDAVSEVVHSESSVFGQIESHLRKLPDIERGLCSIYHKKCSTQEF 626
Query: 769 ISALHGC-ELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEAN 827
+ L + + + A+ + +S L L +P ++S ++H+ + A
Sbjct: 627 FLIVKTLYHLKSEFQALIPAVNSHVQSNLLQTCLLE---IPELLSPVEHYLKILNEQAAK 683
Query: 828 NSGRIIPHGGVDMDYDSACKKVKEIEASLTK---HLKEQRKLLGDTSITYVTIGKDLYLL 884
N + + D+ K+ EI+ K HL+E RK+L + S YVT+ +++
Sbjct: 684 NGDKTELFKDLS-DFPVIKKRKDEIQEVTNKIQTHLQEIRKILKNPSAQYVTVSGQEFMI 742
Query: 885 EVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQF 944
EV S +P D+ S K R+ +P I + L+Q + + + F
Sbjct: 743 EVKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLENF 802
Query: 945 CEHHN 949
EH++
Sbjct: 803 SEHYH 807
>UNIPROTKB|P20585 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein Msh3" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0016447 "somatic recombination of immunoglobulin gene segments"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0032302 "MutSbeta
complex" evidence=IDA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0019237 EMBL:AC008434 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0045910 MIM:608089
GO:GO:0008094 UniGene:Hs.648635 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0051096 PDB:3THW PDB:3THX PDB:3THY PDB:3THZ PDBsum:3THW
PDBsum:3THX PDBsum:3THY PDBsum:3THZ HOGENOM:HOG000029776 KO:K08736
EMBL:J04810 EMBL:U61981 EMBL:D61419 EMBL:AY275681 EMBL:AC010270
EMBL:AC022493 EMBL:BC011817 EMBL:BC130436 IPI:IPI00329605
PIR:A33507 RefSeq:NP_002430.3 UniGene:Hs.280987
ProteinModelPortal:P20585 SMR:P20585 DIP:DIP-35127N IntAct:P20585
MINT:MINT-192778 STRING:P20585 PhosphoSite:P20585 DMDM:229462953
PaxDb:P20585 PRIDE:P20585 Ensembl:ENST00000265081 GeneID:4437
KEGG:hsa:4437 UCSC:uc003kgz.3 CTD:4437 GeneCards:GC05P079986
H-InvDB:HIX0032037 HGNC:HGNC:7326 HPA:HPA036080 HPA:HPA036081
MIM:600887 neXtProt:NX_P20585 PharmGKB:PA31134 HOVERGEN:HBG006400
InParanoid:P20585 OMA:HYFELTV OrthoDB:EOG434W57 GenomeRNAi:4437
NextBio:17293 ArrayExpress:P20585 Bgee:P20585 CleanEx:HS_MSH3
Genevestigator:P20585 GermOnline:ENSG00000113318 GO:GO:0016447
Uniprot:P20585
Length = 1137
Score = 302 (111.4 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 110/427 (25%), Positives = 191/427 (44%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSMNV 391
Q+ E K +H D V+ + G Y F DA + A+EL++ ++ P ++V
Sbjct: 235 QYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHV 294
Query: 392 EKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE----LL- 446
+L KGY+V VV+QTET + ++ + R++ A+ TK TL GE L+
Sbjct: 295 RRLVAKGYKVGVVKQTETAALKAIG----DNRSSLFSRKLTALYTKSTLI-GEDVNPLIK 349
Query: 447 ---SANPD-------ASYLMALTESNQSPASQSTDRCF-GICVVDVATSRIILGQVMXXX 495
+ N D SYL+ ++E+ ++ + F GI V AT ++
Sbjct: 350 LDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSA 409
Query: 496 XXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEI 555
+PVE++ P+ LS +TE I R T + +D + + + E
Sbjct: 410 SRSELETRMSSLQPVELLLPS-ALSEQTEALIHRATSVSVQDDRIRVERM---DNIYFEY 465
Query: 556 KNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYL 615
+ + +T E K ++ SQ I+S +++ V+ +L + YL
Sbjct: 466 SHAFQAVT-EFYAKDTVDIKGSQ-----------IISGIVNLE---KPVICSLAAIIKYL 510
Query: 616 KKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQ 675
K+ L++ L + F+ L +K +M ++ L NLE+ +N + G+L
Sbjct: 511 KEFNLEKMLSKPENFKQLS-------SKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWV 563
Query: 676 LNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAG-LRGVNQPFALEFRKALSRLPDME 734
L+H T+FG+R L+ W+ +PL I R DAV+ L + F + L +LPD+E
Sbjct: 564 LDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFG-QIENHLRKLPDIE 622
Query: 735 RLLARLF 741
R L ++
Sbjct: 623 RGLCSIY 629
Score = 102 (41.0 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 53/245 (21%), Positives = 105/245 (42%)
Query: 715 VNQPFALEFRKALSRLPDMERLL---ARLFASSEANGRNSNKVV--LYEDAAKK-QLQEF 768
V QP L+ R+ +RL + +L + +F E + R + L KK QEF
Sbjct: 580 VTQPL-LKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEF 638
Query: 769 ISALHGC-ELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEAN 827
+ L + + + A+ + +S L ++ +P ++S ++H+ + A
Sbjct: 639 FLIVKTLYHLKSEFQAIIPAVNSHIQSDLLRTVILE---IPELLSPVEHYLKILNEQAAK 695
Query: 828 NSGRIIPHGGVDMDYDSACKKVKEIEASLTK---HLKEQRKLLGDTSITYVTIGKDLYLL 884
+ + D+ K+ EI+ + + HL+E RK+L + S YVT+ +++
Sbjct: 696 VGDKTELFKDLS-DFPLIKKRKDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMI 754
Query: 885 EVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQF 944
E+ S +P D+ S K R+ +P I + L+Q + + + +F
Sbjct: 755 EIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKF 814
Query: 945 CEHHN 949
EH++
Sbjct: 815 SEHYH 819
>UNIPROTKB|F1MLH1 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:DAAA02021015
EMBL:DAAA02021016 EMBL:DAAA02021017 EMBL:DAAA02021018
IPI:IPI00867495 Ensembl:ENSBTAT00000010107 Uniprot:F1MLH1
Length = 1120
Score = 293 (108.2 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 121/490 (24%), Positives = 217/490 (44%)
Query: 274 NPVMGDVSERFSAREADKFHFLGPDRRDAKR-RRPGDVY-YDPRT--LYLPPDFLRNLSE 329
N V + S+ ++++ F LGP ++ + ++ D + RT +Y P +
Sbjct: 169 NAVSSEDSKSQTSQKDKTFSHLGPSQKSYENLQKTSDSKPSNKRTKSIYTPLEL------ 222
Query: 330 GQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFS 388
Q+ E K + D ++ + G Y F DA + A+EL++ ++ P
Sbjct: 223 ---QYLEMKQQQKDAILCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLF 279
Query: 389 MNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE---- 444
++V +L KGY+V VV+QTET + +K + R++ A+ TK TL GE
Sbjct: 280 VHVRRLVAKGYKVGVVKQTETAALKAIG----DNKSSLFSRKLTALYTKSTLI-GEDVNP 334
Query: 445 LL----SANPD-------ASYLMALTESNQSPASQSTDRC-FGICVVDVATSRIILGQVM 492
L+ + N D SYL+ + E+ ++ + GI V AT ++
Sbjct: 335 LVKLDDAVNVDEVMTDTSTSYLLCICENKENVKDKKRGSVSIGIVGVQPATGEVVFDSFQ 394
Query: 493 XXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTV 552
+PVE++ P++ LS +TE I R T + +D + + +
Sbjct: 395 DSASRSELETRILCLQPVELLLPSD-LSEQTETLIHRVTAMSVRDDRIRVERM---KNVY 450
Query: 553 LEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTL 612
E + + +T E K ++ SQ+ S++I+ V+ +L +
Sbjct: 451 FEYSHAFQEVT-EFYAKDVVDIKGSQS-----------FSDIINLE---KPVICSLAAII 495
Query: 613 FYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTL 672
YLK+ L++ L + F+ L G+M +M ++ L NLE+ +N + G+L
Sbjct: 496 RYLKEFNLEKVLSKPKNFKQLS----GEME---FMTINGTTLRNLEILQNQTDMKTKGSL 548
Query: 673 YAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAG-LRGVNQPFALEFRKALSRLP 731
+ L+H T+FG+R L+ W+ +PL I R DAV+ L + F + L +LP
Sbjct: 549 FWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFG-QIENHLRKLP 607
Query: 732 DMERLLARLF 741
D+ER L ++
Sbjct: 608 DIERGLCSIY 617
Score = 164 (62.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 60/226 (26%), Positives = 105/226 (46%)
Query: 604 VLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENS 663
V+ +L + YLK+ L++ L + F+ L G+M +M ++ L NLE+ +N
Sbjct: 487 VICSLAAIIRYLKEFNLEKVLSKPKNFKQLS----GEME---FMTINGTTLRNLEILQNQ 539
Query: 664 RSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAG-LRGVNQPFALE 722
+ G+L+ L+H T+FG+R L+ W+ +PL I R DAV+ L + F +
Sbjct: 540 TDMKTKGSLFWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFG-Q 598
Query: 723 FRKALSRLPDMERLLARLFASSEANGRNSNKVV--LYEDAAKKQLQEFISALHG---CEL 777
L +LPD+ER L ++ + + + +V LY K + Q I A++ EL
Sbjct: 599 IENHLRKLPDIERGLCSIY-HKKCSTQEFFLIVKTLYH--LKSEFQALIPAVNSHVESEL 655
Query: 778 MDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDW 823
+ + +L E H++ + I + FKD D+
Sbjct: 656 LQTFILEIPGLLSPVE----HYLKILNEQAAKIGDKTELFKDLSDF 697
Score = 105 (42.0 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
Identities = 57/246 (23%), Positives = 104/246 (42%)
Query: 715 VNQPFALEFRKALSRLPDMERLL---ARLFASSEANGRNSNKVV--LYEDAAKK-QLQEF 768
V QP L+ R+ +RL + +L + +F E + R + L KK QEF
Sbjct: 568 VTQPL-LKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEF 626
Query: 769 ISALHGC-ELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEAN 827
+ L + + + A+ + ES L + +P ++S ++H+ + A
Sbjct: 627 FLIVKTLYHLKSEFQALIPAVNSHVESELLQTFILE---IPGLLSPVEHYLKILNEQAAK 683
Query: 828 NSGRIIPHGGVDMDYDSACKKVKEIEASLTK----HLKEQRKLLGDTSITYVTIGKDLYL 883
+ + D+ K+ EI+ +TK HL+E RK+L + S YVT+ ++
Sbjct: 684 IGDKTELFKDLS-DFPLIKKRKDEIQ-DVTKKIQTHLQEIRKILKNPSAQYVTVSGQEFM 741
Query: 884 LEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQ 943
+EV S +P D+ S K R+ +P I + L+Q + + +
Sbjct: 742 IEVKNSAVSCIPTDWVKIGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLAFLEN 801
Query: 944 FCEHHN 949
F EH++
Sbjct: 802 FNEHYH 807
Score = 37 (18.1 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 883 LLEVP-ESLRGSVPRDYEL-------RSSKKGFFRYWTPNIKKLLGELSQAE 926
L +VP E L+ + + EL R K F + WT N K L + ++ E
Sbjct: 1063 LADVPGEILKKAASKSKELEGLVNMKRKKLKCFTKLWTVNDAKDLQKWTEEE 1114
>UNIPROTKB|Q8TTB4 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:188937 "Methanosarcina acetivorans C2A" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE010299 GenomeReviews:AE010299_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_615487.1 ProteinModelPortal:Q8TTB4
GeneID:1472415 KEGG:mac:MA0523 BioCyc:MACE188937:GI2O-590-MONOMER
Uniprot:Q8TTB4
Length = 900
Score = 223 (83.6 bits), Expect = 6.9e-26, Sum P(3) = 6.9e-26
Identities = 75/253 (29%), Positives = 113/253 (44%)
Query: 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK------GEQ-PH 379
++ +Q++E K + D +IFF+MG FYE F DA AKEL++ GE+ P
Sbjct: 5 MTPAMRQYYEAKQAYPDTLIFFRMGDFYESFGEDAKTIAKELEITLTARGKDRTGERMPL 64
Query: 380 CGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGT 439
G P + +L KGY+V + EQ E P +K KG VVKR + VVT GT
Sbjct: 65 AGIPYHAIDTYLPRLINKGYKVAICEQLEDP------KKAKG----VVKRGVVRVVTPGT 114
Query: 440 LTEGELLSANPDAS--YLMALT--ESNQSPASQSTDRCFGICVVDVATSRIILGQVMXXX 495
+ + S DAS YLMA+ E +S + + FGI +D++T + Q
Sbjct: 115 AIDSSMFS---DASNNYLMAVAGREGGKSGKNGEKEMEFGISFLDISTGEFLTTQFTDSE 171
Query: 496 XXXXXXXXXXXXRPVEIIKPANML-SPETERAILRHTRNPLVNDLVPLSEFWDAETTVLE 554
P E I P ++ + E + HT +V + P E + E +
Sbjct: 172 NFDKLLSELARMHPAECILPPSLYGNSELTGKLREHT---IVQEFAP--EVFGTEEAGEK 226
Query: 555 IKNIYNRITAESL 567
+K + T E +
Sbjct: 227 LKTHFGVATLEGM 239
Score = 142 (55.0 bits), Expect = 6.9e-26, Sum P(3) = 6.9e-26
Identities = 34/95 (35%), Positives = 50/95 (52%)
Query: 646 YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRER 705
+M+LD+ L NLE+ +N R +LY LN T G R L+ WL +PL + I R
Sbjct: 280 FMILDSITLRNLEIVKNVRDEGDENSLYRTLNCTRTPMGNRTLKKWLLKPLLSVEKINPR 339
Query: 706 QDAVAGLRGVNQPFALEFRKALSRLPDMERLLARL 740
DA+ L + + R LS + D+ERL+ R+
Sbjct: 340 LDAIEEL-AEDSLLRYDIRDWLSDVRDIERLVGRI 373
Score = 64 (27.6 bits), Expect = 6.9e-26, Sum P(3) = 6.9e-26
Identities = 33/153 (21%), Positives = 66/153 (43%)
Query: 787 AILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGG-VDMDYDSA 845
++LE L I +GL A S L+ + + + + GG + Y
Sbjct: 399 SLLEKARFEMLKEI---AEGL-ASFSELEELAEMIEIAIMDEPPVSVREGGMIKSGYSPE 454
Query: 846 CKKVKEIEASLTKHLKE-QRKLLGDTSITYVTIGKDL---YLLEVPESLRGSVPRDYELR 901
++++I ++ + + Q+K + I + +G + Y +EV + VP DY +
Sbjct: 455 LDELRDISSNSKQWIAAFQQKERERSGIKSLKVGYNKVFGYYIEVTHANSSQVPEDYIRK 514
Query: 902 SSKKGFFRYWTPNIKKLLGELSQAESEKESALK 934
+ R++TP +K+ + A +EK AL+
Sbjct: 515 QTMANAERFFTPELKEKESLILTA-NEKAVALE 546
>UNIPROTKB|F1P9S9 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:KRTKSIY
GeneTree:ENSGT00550000074949 EMBL:AAEX03002106
Ensembl:ENSCAFT00000013983 Uniprot:F1P9S9
Length = 1058
Score = 276 (102.2 bits), Expect = 9.6e-26, Sum P(2) = 9.6e-26
Identities = 109/430 (25%), Positives = 187/430 (43%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSMNV 391
Q+ E K + D ++ + G Y F DA + A+EL++ ++ P ++V
Sbjct: 158 QYIELKQQQKDAILCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHV 217
Query: 392 EKLARKGYRVLVVEQTETPEQLELRRKEKG-SKDKVVKREICAVVTKGTLTEGELLSANP 450
+L KGY+V VV+QTET K G +K + R++ A+ TK TL GE NP
Sbjct: 218 RRLVAKGYKVGVVKQTETAAL-----KAVGDNKSSLFSRKLTALYTKSTLI-GE--DVNP 269
Query: 451 -----DA------------SYLMALTESNQSPASQSTDRCF-GICVVDVATSRIILGQVM 492
DA S+L+ + E+ ++ + F GI V T ++
Sbjct: 270 LVKLDDAINVDEVMTDTSTSFLLCICENEENVKDKKKGNIFIGIVGVQPVTGEVVFDSFQ 329
Query: 493 XXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTV 552
+PVE++ P+ LS +TE + R T + +D + + +
Sbjct: 330 DSASRSELETRILCLQPVEMLLPSR-LSEQTETLVHRATAASVRDDRIRVERM---DNVY 385
Query: 553 LEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTL 612
E + + +T E K ++ SQ+ GI++ V+ +L +
Sbjct: 386 FEYSHAFQAVT-EFYAKDAVDIQASQS-------FSGIIN-------LEKPVICSLAAVI 430
Query: 613 FYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTL 672
YLK+ L++ L + F+ G+M +M ++ L NLE+ +N + G+L
Sbjct: 431 RYLKEFNLEKVLSKPKNFKQFS----GEME---FMTINGTTLRNLEILQNQTDMKTKGSL 483
Query: 673 YAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAG-LRGVNQPFALEFRKALSRLP 731
L+H T+FG+R L+ W+ +PL I R DAV+ L + F + L +LP
Sbjct: 484 LWVLDHTKTSFGRRKLKKWVVQPLLKLREINARLDAVSEVLHSESSVFG-QIENHLRKLP 542
Query: 732 DMERLLARLF 741
D+ER L ++
Sbjct: 543 DIERGLCSIY 552
Score = 105 (42.0 bits), Expect = 9.6e-26, Sum P(2) = 9.6e-26
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 848 KVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGF 907
+++E+ + HL+E RK+L + S+ YVT+ +++E+ S +P D+ S K
Sbjct: 641 EIQEVTDKIQMHLQEIRKILKNPSLQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAV 700
Query: 908 FRYWTPNIKKLLGELSQAESE 928
R+ +P I + L+Q +
Sbjct: 701 SRFHSPFIVENYRHLNQLREQ 721
>TIGR_CMR|APH_0857 [details] [associations]
symbol:APH_0857 "DNA mismatch repair protein MutS"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
RefSeq:YP_505434.1 STRING:Q2GJL7 GeneID:3930413 KEGG:aph:APH_0857
PATRIC:20950410 HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
BioCyc:APHA212042:GHPM-871-MONOMER PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 Uniprot:Q2GJL7
Length = 820
Score = 185 (70.2 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 45/130 (34%), Positives = 75/130 (57%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK-G-EQPHCGFPERNFSM 389
+Q+ K ++ + ++ +++G FYELF DA + +K L++ K G + P CG P +
Sbjct: 12 RQYRALKEQYGECLLLYRLGDFYELFFEDAVIASKTLNIVLTKRGTDTPMCGVPYHSSES 71
Query: 390 NVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSAN 449
+ +L + GY+V V EQ ET E E R++ S +V+RE+ +VT GTL E LL A
Sbjct: 72 YIGRLVKSGYKVAVCEQIETAE--EARKR---SVRALVRREVTRIVTPGTLVEDSLLDAK 126
Query: 450 PDASYLMALT 459
+ +YL ++
Sbjct: 127 EN-NYLACIS 135
Score = 168 (64.2 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 36/95 (37%), Positives = 60/95 (63%)
Query: 646 YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRER 705
++++D PAL NLE+F +++SG+ G+L + ++H VTA G R+L+ +LA P+ +I R
Sbjct: 267 FVLIDGPALRNLELF-STQSGEKKGSLISTIDHTVTAMGSRMLKRYLAFPVACHNVINGR 325
Query: 706 QDAVAGLRGVNQPFALEFRKALSRLPDMERLLARL 740
QDAV N+ R ++ PD+ER+L R+
Sbjct: 326 QDAVEFFVS-NRSLCEVIRGVINGFPDIERILTRV 359
Score = 62 (26.9 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 40/178 (22%), Positives = 74/178 (41%)
Query: 777 LMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEA---NNSGRII 833
L+ +A S + L SR H I++ +VS+ H +D + N+ I
Sbjct: 371 LLGRALSKIFE-LSRIISRSTHAIISK-----ILVSLGDH-RDLLKLISEVMLENNATIT 423
Query: 834 PHGG-VDMDYDSACKKVKEIEAS---LTKHLKEQ-RKLLGDTSITYVTIGKDLYLLEVPE 888
GG ++ + ++ I+ L + L+++ R L G +S+ ++ Y +EV
Sbjct: 424 KDGGFINPGCNERLAELARIQNDSGVLIQRLRDKYRALTGISSLKILSNNLLGYYIEVSS 483
Query: 889 SLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCE 946
S + S + R S RY T +K+L + A+SE I + L + +
Sbjct: 484 SYKVS-DESFVRRQSLANSTRYTTAELKELEERIVSAQSESADLEAQIFKGLCSRIAD 540
Score = 42 (19.8 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 410 PEQLEL--RRKEKGSKDKVVKREICAVVT 436
P +L + + KE+ S + V+KR CA+ +
Sbjct: 172 PSELLISDKLKEQQSMELVLKRHRCAITS 200
Score = 41 (19.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 749 RNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLP 808
R+SN VL + A + L+ F S G E S++ + SR L L P
Sbjct: 262 RDSNSFVLIDGPALRNLELF-STQSG-EKKGSLISTIDHTVTAMGSRMLKRYLA----FP 315
Query: 809 -AIVSILKHFKDAFDWVEANNS 829
A +++ +DA ++ +N S
Sbjct: 316 VACHNVINGRQDAVEFFVSNRS 337
Score = 37 (18.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 841 DYDSACKKVKEIEASLTKHLKEQRKL 866
D DS +++ E ++ LKEQ+ +
Sbjct: 162 DLDSEIQRLGPSELLISDKLKEQQSM 187
>UNIPROTKB|F1LQM8 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1563954 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08736 CTD:4437
GeneTree:ENSGT00550000074949 IPI:IPI00196502 RefSeq:NP_001178886.1
UniGene:Rn.162551 Ensembl:ENSRNOT00000018449 GeneID:499505
KEGG:rno:499505 NextBio:703076 ArrayExpress:F1LQM8 Uniprot:F1LQM8
Length = 1105
Score = 251 (93.4 bits), Expect = 7.2e-23, Sum P(2) = 7.2e-23
Identities = 108/422 (25%), Positives = 179/422 (42%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSMNV 391
Q+ + K H D V+ + G Y F DA + A+EL++ ++ P ++V
Sbjct: 193 QYLDVKQLHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHV 252
Query: 392 EKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPD 451
+L KGY+V VV+QTET + +K V R++ A+ TK TL GE NP
Sbjct: 253 RRLVAKGYKVGVVKQTETAALKAIG----DNKSSVFSRKLTALYTKSTLI-GE--DVNP- 304
Query: 452 ASYLMALTES-NQSPASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPV 510
L+ L +S N A T + +C+ + + I + V
Sbjct: 305 ---LIRLDDSVNIDEAVTDTSTNYLLCIYEEKEN--IKDKKKGNISFGIVGVQPATGEVV 359
Query: 511 -EIIKP-ANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLN 568
+ + A+ L ET A L+ L + L +E T + + + +RI E +N
Sbjct: 360 FDCFQDSASRLELETRTASLQPVELLLPSQLSEPTEMLIRRATAVSVGD--DRIRVERMN 417
Query: 569 KADSNVANSQAEGDGLTCLPGILSELISTGDSGS---------QVLSALGGTLFYLKKSF 619
+++ T + E + T S S V+ AL + YLK+
Sbjct: 418 NTHFEYSHAFQ-----TVMEFYARETVDTQGSQSLSGVIHLEKPVICALAAIIRYLKEFN 472
Query: 620 LDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHC 679
LD+ L + F+ L SG +M ++ L NLE+ +N + G+L L+H
Sbjct: 473 LDKVLSKPENFKQLS-SGM------EFMRINGTTLRNLEILQNQTDMKTRGSLLWVLDHT 525
Query: 680 VTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLAR 739
T+FG+R L+ W+ +PL I R DA++ + + L +LPD+ER L
Sbjct: 526 KTSFGRRKLKKWVTQPLLKLRDINARLDAISDVLHSESSVFEQIENLLRKLPDVERGLCS 585
Query: 740 LF 741
++
Sbjct: 586 IY 587
Score = 104 (41.7 bits), Expect = 7.2e-23, Sum P(2) = 7.2e-23
Identities = 26/102 (25%), Positives = 50/102 (49%)
Query: 848 KVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGF 907
+++E+ S+ HL+E RK+L S+ YVT+ +++E+ S VP D+ S K
Sbjct: 676 EIQEVIHSIQMHLQELRKILKLPSLQYVTVSGQEFMVEIKNSAVSCVPTDWVKVGSTKAV 735
Query: 908 FRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHN 949
R+ +P + + L+Q + + + F EH++
Sbjct: 736 SRFHSPFVVENYRRLNQLREQLVLDCNAEWLDFLENFGEHYH 777
>TIGR_CMR|ECH_0824 [details] [associations]
symbol:ECH_0824 "DNA mismatch repair protein MutS"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_507620.1
ProteinModelPortal:Q2GG13 STRING:Q2GG13 GeneID:3926941
KEGG:ech:ECH_0824 PATRIC:20577070
BioCyc:ECHA205920:GJNR-827-MONOMER Uniprot:Q2GG13
Length = 804
Score = 188 (71.2 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 44/136 (32%), Positives = 78/136 (57%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK-GEQPHCGFPERNFSMN 390
+Q+ KS++ + ++F+++G FYELF DA ++ L++ K G P CG P +
Sbjct: 12 QQYMMLKSQYKEYLLFYRLGDFYELFFDDAIETSRILNIVLTKKGNVPMCGVPFHSSESY 71
Query: 391 VEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANP 450
+ +L + GY++ + EQ ET E+ K++G K +VKR++ +VT GT+ E LL A
Sbjct: 72 LNRLVKLGYKIAICEQLETSEEA----KKRGYK-ALVKRDVVRIVTPGTILEDSLLEAKE 126
Query: 451 DASYLMALTESNQSPA 466
+ +YL + + + A
Sbjct: 127 N-NYLSCIVNVDHNYA 141
Score = 144 (55.7 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 48/151 (31%), Positives = 75/151 (49%)
Query: 591 LSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLD 650
+S L GD ++ ++ G L Y+K + + E GD +M +D
Sbjct: 220 ISTLKGLGDLKNEEIAVCGSLLEYVKATQKGN----LPQLEFPKAYSKGD-----FMFID 270
Query: 651 APALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVA 710
A AL NLE+F ++SGD G+L + +++ +TA G RLL+ L+ PL S I R D V
Sbjct: 271 AAALRNLELF-CTQSGDLEGSLISSIDYTITACGGRLLKRCLSAPLACSHAINRRLDIVE 329
Query: 711 GLRGVN-QPFALEFRKALSRLPDMERLLARL 740
VN + R+ L + D+ER+L R+
Sbjct: 330 FF--VNDRTLCRGVRETLRGIADIERILTRI 358
Score = 66 (28.3 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 31/123 (25%), Positives = 57/123 (46%)
Query: 827 NNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQR-KLLGDTSITYVTI--GKDL-Y 882
NN + G ++ DYD+ + I++ ++E R K T+I + I L Y
Sbjct: 417 NNVNNVKDGGFINPDYDAQLSEYIYIQSYSNDLIQELRDKYRNITNIQSLKILYNNILGY 476
Query: 883 LLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIG 942
+EV S S +D+ R + RY T +K L ++ A +++A+ ++ ++ G
Sbjct: 477 YVEVSSSYLIS-DKDFIHRQTLANSIRYTTSELKALESKIISA---RDAAI-NLEVKIFG 531
Query: 943 QFC 945
Q C
Sbjct: 532 QLC 534
>MGI|MGI:109519 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IGI] [GO:0003684
"damaged DNA binding" evidence=IGI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0019237 "centromeric DNA binding" evidence=IDA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=ISO;IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=ISO;IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:109519 GO:GO:0005524 GO:GO:0003684
GO:GO:0019237 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 KO:K08736
CTD:4437 HOVERGEN:HBG006400 OrthoDB:EOG434W57 GO:GO:0016447
EMBL:M80360 EMBL:L10319 EMBL:L10295 EMBL:L10296 EMBL:L10297
EMBL:L10298 EMBL:L10299 EMBL:L10300 EMBL:L10301 EMBL:L10304
EMBL:L10305 EMBL:L10306 EMBL:L10307 EMBL:L10308 EMBL:L10309
EMBL:L10310 EMBL:L10311 EMBL:L10312 EMBL:L10313 EMBL:L10314
EMBL:L10315 EMBL:L10316 EMBL:L10317 EMBL:L10318 EMBL:M24919
IPI:IPI00896729 PIR:A32495 RefSeq:NP_034959.2 UniGene:Mm.343101
ProteinModelPortal:P13705 SMR:P13705 STRING:P13705
PhosphoSite:P13705 PaxDb:P13705 PRIDE:P13705 GeneID:17686
KEGG:mmu:17686 InParanoid:P13705 ChiTaRS:MSH3 NextBio:292256
CleanEx:MM_MSH3 Genevestigator:P13705 GermOnline:ENSMUSG00000014850
Uniprot:P13705
Length = 1091
Score = 252 (93.8 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 106/417 (25%), Positives = 181/417 (43%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSMNV 391
Q+ + K +H D V+ + G Y F DA + A+EL++ ++ P ++V
Sbjct: 193 QYLDMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHV 252
Query: 392 EKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPD 451
+L KGY+V VV+QTET + +K V R++ A+ TK TL GE NP
Sbjct: 253 RRLVAKGYKVGVVKQTETAALKAIG----DNKSSVFSRKLTALYTKSTLI-GE--DVNP- 304
Query: 452 ASYLMALTES-NQSPASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPV 510
L+ L +S N T + +C+ + + I + V
Sbjct: 305 ---LIRLDDSVNIDEVMTDTSTNYLLCIYEEKEN--IKDKKKGNLSVGVVGVQPATGEVV 359
Query: 511 -EIIKP-ANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLN 568
+ + A+ L ET + L+ L +DL +E T + +++ +RI E +N
Sbjct: 360 FDCFQDSASRLELETRISSLQPVELLLPSDLSEPTEMLIQRATNVSVRD--DRIRVERMN 417
Query: 569 KAD---SNVANSQAEGDGLTCLPGILSELIS-TGDSGSQVLSALGGTLFYLKKSFLDETL 624
S+ + E + S+ +S + V+ AL + YLK+ L++ L
Sbjct: 418 NTYFEYSHAFQTVTEFYAREIVDSQGSQSLSGVINLEKPVICALAAVIRYLKEFNLEKML 477
Query: 625 LRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFG 684
+ F+ L SG +M ++ L NLE+ +N + G+L L+H T+FG
Sbjct: 478 SKPESFKQLS-SGM------EFMRINGTTLRNLEMVQNQTDMKTKGSLLWVLDHTKTSFG 530
Query: 685 KRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLF 741
+R L+ W+ +PL I R DAV+ + + L +LPD+ER L ++
Sbjct: 531 RRKLKNWVTQPLLKLREINARLDAVSDVLHSESSVFEQIENLLRKLPDVERGLCSIY 587
Score = 95 (38.5 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 25/102 (24%), Positives = 48/102 (47%)
Query: 848 KVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGF 907
+++E+ S+ L+E RK+L S+ YVT+ +++E+ S +P D+ S K
Sbjct: 673 EIQEVIHSIQMRLQEFRKILKLPSLQYVTVSGQEFMIEIKNSAVSCIPADWVKVGSTKAV 732
Query: 908 FRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHN 949
R+ P I + L+Q + + + F EH++
Sbjct: 733 SRFHPPFIVESYRRLNQLREQLVLDCNAEWLGFLENFGEHYH 774
>UNIPROTKB|P74926 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243274 "Thermotoga maritima MSB8" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE000512 GenomeReviews:AE000512_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 EMBL:U71155 PIR:C72219 RefSeq:NP_229518.1
ProteinModelPortal:P74926 GeneID:897879 KEGG:tma:TM1719
PATRIC:23938414 Uniprot:P74926
Length = 793
Score = 163 (62.4 bits), Expect = 6.1e-22, Sum P(3) = 6.1e-22
Identities = 39/130 (30%), Positives = 70/130 (53%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ-PHCGFPERNFSMN 390
+Q+ K ++ D ++ F++G FYE F DA + +K L++ + + P G P +
Sbjct: 8 EQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNIVLTRRQDAPMAGIPYHALNTY 67
Query: 391 VEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANP 450
++KL GY+V + +Q E P + SK K+++RE+ VVT G++ E E LS
Sbjct: 68 LKKLVEAGYKVAICDQMEEPSK---------SK-KLIRREVTRVVTPGSIVEDEFLSETN 117
Query: 451 DASYLMALTE 460
+ Y+ ++E
Sbjct: 118 N--YMAVVSE 125
Score = 148 (57.2 bits), Expect = 6.1e-22, Sum P(3) = 6.1e-22
Identities = 47/137 (34%), Positives = 71/137 (51%)
Query: 605 LSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSR 664
L AL + Y+K + + E L K LL ++++ YM+LD+ +ENL +
Sbjct: 217 LKALAALIKYVKYTMIAEDLN--LKPPLL-------ISQRDYMILDSATVENLSLIP--- 264
Query: 665 SGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE-F 723
GD L+ LN+ T G RLL+ W+ PL + I ER AV L VN +LE
Sbjct: 265 -GDRGKNLFDVLNNTETPMGARLLKKWILHPLVDRKQIEERLKAVERL--VNDRVSLEEM 321
Query: 724 RKALSRLPDMERLLARL 740
R LS + D+ER+++R+
Sbjct: 322 RNLLSNVRDVERIVSRV 338
Score = 81 (33.6 bits), Expect = 6.1e-22, Sum P(3) = 6.1e-22
Identities = 34/151 (22%), Positives = 69/151 (45%)
Query: 810 IVSIL-KHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKE-QRKLL 867
+V +L K +D D V + G++I G + S + +++ + LKE + K
Sbjct: 380 LVDLLRKAIED--DPVGSPGEGKVIKRG-----FSSELDEYRDLLEHAEERLKEFEEKER 432
Query: 868 GDTSITYVTIGKDL---YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQ 924
T I + +G + Y +EV ++ +P DYE + + R+ TP +K+ ++
Sbjct: 433 ERTGIQKLRVGYNQVFGYYIEVTKANLDKIPDDYERKQTLVNSERFITPELKEFETKIMA 492
Query: 925 AESEKESALKSILQRLIGQFCEHHNKWRQMV 955
A+ E K + + + CE K ++++
Sbjct: 493 AKERIEELEKELFKSV----CEEVKKHKEVL 519
Score = 46 (21.3 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 33/127 (25%), Positives = 60/127 (47%)
Query: 535 LVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSEL 594
LVND V L E + + V +++ I +R+ N+ S + A + L +P L+E+
Sbjct: 311 LVNDRVSLEEMRNLLSNVRDVERIVSRV---EYNR--SVPRDLVALRETLEIIPK-LNEV 364
Query: 595 ISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPAL 654
+ST + L+ G + L+K+ D+ + + +++ GF + Y L A
Sbjct: 365 LSTFGVFKK-LAFPEGLVDLLRKAIEDDPVGSPGEGKVIK-RGFSSELDE-YRDLLEHAE 421
Query: 655 ENLEVFE 661
E L+ FE
Sbjct: 422 ERLKEFE 428
Score = 42 (19.8 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 13/65 (20%), Positives = 31/65 (47%)
Query: 755 VLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHI-LTPGKGLPAIVSI 813
++ + K L+E ++ + + S L + + + +HH L+P L A+ ++
Sbjct: 165 IICPEHLKSSLKERFPGVYTETISEWYFSDLEEVEKAYNLKDIHHFELSP-LALKALAAL 223
Query: 814 LKHFK 818
+K+ K
Sbjct: 224 IKYVK 228
>CGD|CAL0000288 [details] [associations]
symbol:orf19.3608 species:5476 "Candida albicans" [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000735 "removal of nonhomologous ends"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032135 "DNA insertion or deletion binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0000403 "Y-form DNA binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0005634 GO:GO:0006298 GO:GO:0030983
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG0249 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HSSP:P23909 KO:K08736
RefSeq:XP_714452.1 RefSeq:XP_714501.1 ProteinModelPortal:Q59Y41
STRING:Q59Y41 GeneID:3643846 GeneID:3643889 KEGG:cal:CaO19.11091
KEGG:cal:CaO19.3608 Uniprot:Q59Y41
Length = 1037
Score = 192 (72.6 bits), Expect = 6.9e-22, Sum P(2) = 6.9e-22
Identities = 76/301 (25%), Positives = 138/301 (45%)
Query: 644 KPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIR 703
K YM+L A L +LE+F N+ + G+L+ LN+ T FG RLL+ W++RPL + I+
Sbjct: 411 KKYMILPANTLNSLEIFTNTTDHTTKGSLFKLLNNTKTIFGSRLLQKWVSRPLVHIQDIK 470
Query: 704 ERQDAVAGLRGVNQPFALEFRKALSRLP--DMERLLARLFASSEANGRNS---NKVVLYE 758
+R A+ L+ L+++ D+E LL+++ SS N N+ N+ +Y
Sbjct: 471 DRHQAIEDLQSEYNHVVDSISNFLTKIKYLDLEGLLSKIHYSSTNNNNNNLRINRKQVY- 529
Query: 759 DAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGK-GLPAIVSILKHF 817
LQE + + E ++ ++L +LT + + I + L
Sbjct: 530 -LLLSNLQEILILVQKFEKSIKSFKFKSSLLIQI----FDELLTISQTDIIIIENFLSMI 584
Query: 818 KDAF-DWVEANNSGRII----PHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSI 872
+F D E++ R +++ Y + + ++IE + L+ RK LG++ +
Sbjct: 585 DLSFIDCKESSEQCRKFFKRNSFDSIELQYQNIAQYQQQIEQ---EQLEIIRKELGNSKL 641
Query: 873 TYVTIGKDLYLLEVPESLRGSVPR-----DYELRSSKKGFFRYWTPNIKKLLGELSQAES 927
YV + YL+E+ + R + + DY L S + RY ++ + L +L Q
Sbjct: 642 KYVQKDGERYLIEIRNNQRDKLSKILDDKDYILIKSTQTITRYRKKSVTEYL-KLLQYHE 700
Query: 928 E 928
E
Sbjct: 701 E 701
Score = 155 (59.6 bits), Expect = 6.9e-22, Sum P(2) = 6.9e-22
Identities = 41/169 (24%), Positives = 89/169 (52%)
Query: 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQP-----H 379
+ L+ +KQ E +H DK++ ++G Y++F ++A +K L++ Y+ + +
Sbjct: 105 KRLTPLEKQILELTEQHQDKILLIQIGYKYKVFGINALKVSKILNIMYISNDIEDTRFHY 164
Query: 380 CGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGT 439
C P+ ++++++ GY+V VV+Q E+ ++ + K S V++RE+ V TK T
Sbjct: 165 CSIPDTRLHIHLQRILSHGYKVGVVKQIESTIVKQIEKTSKSSD--VMRREVTGVYTKAT 222
Query: 440 LTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIIL 488
G+ + N S+ L+ S+ S +S + + +C+ +V+ + +
Sbjct: 223 YL-GDESNENTKGSW-DGLSSSSSSSSSDVPE--YIVCINEVSEKQFAI 267
Score = 43 (20.2 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 22/93 (23%), Positives = 41/93 (44%)
Query: 539 LVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTG 598
LV + + D + ++++ YN + DS ++N + L L G+LS++ +
Sbjct: 463 LVHIQDIKDRHQAIEDLQSEYNHVV-------DS-ISNFLTKIKYLD-LEGLLSKIHYSS 513
Query: 599 DSGSQVLSALGGTLFYLKKSFLDETLLRFAKFE 631
+ + + YL S L E L+ KFE
Sbjct: 514 TNNNNNNLRINRKQVYLLLSNLQEILILVQKFE 546
>UNIPROTKB|Q759V4 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:284811 "Ashbya gossypii ATCC 10895" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0005737 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 EMBL:AE016817 GenomeReviews:AE016817_GR
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 HSSP:Q56215
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
RefSeq:NP_984265.1 ProteinModelPortal:Q759V4 STRING:Q759V4
EnsemblFungi:AAS52089 GeneID:4620427 KEGG:ago:AGOS_ADR168C
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M PhylomeDB:Q759V4
Uniprot:Q759V4
Length = 1032
Score = 216 (81.1 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 102/349 (29%), Positives = 159/349 (45%)
Query: 614 YLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLY 673
YL +F +E+LL F + F K +M+L + A+E+L++FENS S G+L
Sbjct: 396 YLT-NFKNESLLFFKE-------NFKPFCSKTHMILPSSAIESLDIFENSTDRSSKGSLL 447
Query: 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRG-VNQPFALEFRKALSRLPD 732
L+H T +G R L+ W+A+PL N I++R DAV + V F L D
Sbjct: 448 WVLDHTRTNYGLRNLKNWIAKPLINIDQIQQRLDAVQCISTEVGNIFIESLNNMLRDGQD 507
Query: 733 MERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENT 792
+ER+L R+ A G+ S + V QL S+ H + S+ G I
Sbjct: 508 LERILNRI-----AYGKTSRREVYLFLRELTQLATLFSSHHRY-IETNVLSANGKI--RM 559
Query: 793 ESRQLHHILTP----GKGLPAIVSILKHFK-DAFDWVEANNSGRIIPHGGVDMDYDSA-- 845
+S L +I T K P I + L DA ++ N + + + YD A
Sbjct: 560 QSSLLANIFTDLDEYWKQFP-IPNFLAMINIDAA--LDKNPDRPYVEYFNLTK-YDRAEP 615
Query: 846 -CKKVKEIEA---SLTKHLKEQRKLLGDTSITYVTIGKDL--YLLEVPESLRGSVPRDYE 899
K ++IEA L LK R +L + Y KD +L+E+ + SVP D+
Sbjct: 616 LISKQQDIEAVIGELRDELKNIRVILKRPMLNY----KDEIDFLVEIRNTQVSSVPVDWV 671
Query: 900 LRSSKKGFFRYWTPNIKKLLGELS-QAESEKESALK---SILQRLIGQF 944
+S K R+ TP KL+ +L E ++ AL+ S ++R+ G++
Sbjct: 672 KVASTKAVSRFQTPGTAKLVAKLQYHKELLQDLALQEYESFIKRITGEY 720
Score = 124 (48.7 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 38/141 (26%), Positives = 69/141 (48%)
Query: 314 PRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM 373
PR+ P+ L+E +Q+ + K +HMDKV+ ++G Y+ F DA + ++ L ++ +
Sbjct: 130 PRSKRAKPN---RLTELDQQFKDLKLQHMDKVLAVRVGYKYKFFAEDAVMVSRVLQIKLV 186
Query: 374 KGE------QP---------HCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRK 418
G+ P +C P+ +++++L +V VVEQTET +K
Sbjct: 187 PGKLTVHETDPADHKHKKFAYCTIPDTRLEVHLQRLMHHNLKVGVVEQTETSAV----KK 242
Query: 419 EKGSKDKVVKREICAVVTKGT 439
G+ V RE+ + T+ T
Sbjct: 243 NSGTSSSVFSREVTNIFTRAT 263
>UNIPROTKB|Q89VX1 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224911 "Bradyrhizobium japonicum USDA 110" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000040 GenomeReviews:BA000040_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:NP_767564.1
ProteinModelPortal:Q89VX1 GeneID:1049823 KEGG:bja:bll0924
PATRIC:21185344 BioCyc:BJAP224911:GJEJ-933-MONOMER Uniprot:Q89VX1
Length = 912
Score = 224 (83.9 bits), Expect = 5.1e-21, Sum P(2) = 5.1e-21
Identities = 58/163 (35%), Positives = 89/163 (54%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK-GEQ-----PHCGFPER 385
+Q+ E K+ H ++F++MG FYELF DA + +K L + K G+ P CG P
Sbjct: 31 EQYLEIKAAHQGLLLFYRMGDFYELFFEDAEIASKTLGIVLTKRGKHQGADIPMCGVPVE 90
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ +L G+RV V EQTE P K +G+K VV+R + +VT GTLTE L
Sbjct: 91 RAEDYLHRLISAGHRVAVCEQTEDPAAA----KARGNKS-VVRRGVVRLVTPGTLTEDTL 145
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIIL 488
L A + +YL+A+ + S DR FG+ +D++T+ ++
Sbjct: 146 LDARAN-NYLLAIARARSSTGG---DR-FGLAWIDISTAEFMV 183
Score = 112 (44.5 bits), Expect = 5.1e-21, Sum P(2) = 5.1e-21
Identities = 36/95 (37%), Positives = 47/95 (49%)
Query: 647 MVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706
M +D NLE+ + +G+ G+L ++ VT+ G RLL LA PL ++ I R
Sbjct: 295 MAIDPATRANLEL-TRTLAGERRGSLLDAIDCTVTSAGSRLLAQRLAAPLTDAPAIARRL 353
Query: 707 DAVAGLRGVNQPFALE-FRKALSRLPDMERLLARL 740
DAV V A E R L PDM R LARL
Sbjct: 354 DAVGAF--VADSAAREDIRSILRGAPDMSRALARL 386
>UNIPROTKB|A4R0R0 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0005634
GO:GO:0006298 EMBL:CM001231 GO:GO:0030983 eggNOG:COG0249
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08736
OrthoDB:EOG42NN7M RefSeq:XP_003709956.1 STRING:A4R0R0
EnsemblFungi:MGG_09306T0 GeneID:2680221 KEGG:mgr:MGG_09306
Uniprot:A4R0R0
Length = 1151
Score = 216 (81.1 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 84/327 (25%), Positives = 143/327 (43%)
Query: 638 FGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLY 697
F + + +M ++ LE+LEV+ NS G+L L+ T FG+R+LR WL RPL
Sbjct: 533 FQSFSTRSHMCINGTTLESLEVYRNSTDHTEKGSLLWALDKTRTRFGQRMLRKWLGRPLL 592
Query: 698 NSGLIRERQDAVAGL-RGVNQPFALEFRKALSRLP-DMERLLARLFASSEANGRNSNKVV 755
+ + +R AV L N P + +K LS + D+ER L R+F +
Sbjct: 593 DKERLDDRVAAVEELFENRNGPQVEKLQKLLSSIKTDLERSLIRIFYGRCTRPELLAVLQ 652
Query: 756 LYEDAAKKQL--QEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSI 813
+ A + + +E L+ +A +SL I E S L+ I P +
Sbjct: 653 TLQRIAVEYIVVKEPSQTGFKSNLVSEALASLPRIREIVVS-YLNRI-NPD-------AA 703
Query: 814 LKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLG-DTSI 872
K+ K F E++++G G D + + + +E L H + LG ++
Sbjct: 704 RKNDKYEFFRDESDDTG----DDGED-EITTQKMSIAAVEQELDAHRSDAAATLGRKKAV 758
Query: 873 TYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESA 932
YVT+ YL+EVP + VP + S K R+ TP + +L+ E Q + +A
Sbjct: 759 DYVTVAGIEYLIEVPNTEIRKVPASWAKISGTKKLSRFHTPEVVRLIAERDQHKEALAAA 818
Query: 933 LKSILQRLIGQFCEHHNKWRQMVAATA 959
+ + ++ + + R V++ A
Sbjct: 819 CDAAFKAMLASIADQYQPLRDAVSSLA 845
Score = 120 (47.3 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 42/143 (29%), Positives = 66/143 (46%)
Query: 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-----EQP--- 378
L+ + Q+ E K KHMD V+ ++G + F DA + KEL + + G E P
Sbjct: 226 LTPMELQFLEIKRKHMDTVLIVEVGYKFRFFGEDARIAGKELSIVCIPGKFRYDEHPSEA 285
Query: 379 H------CGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREIC 432
H P ++ ++L G++V VV Q ET +K +++ R++C
Sbjct: 286 HLDRFASASIPVHRLPVHAKRLVAAGHKVGVVRQIETAAL----KKAGDNRNAPFVRKLC 341
Query: 433 AVVTKGTLTE--GELLSANPDAS 453
V TKGT + GE+ A AS
Sbjct: 342 EVYTKGTYIDEMGEM-DAQTGAS 363
Score = 95 (38.5 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 56/242 (23%), Positives = 90/242 (37%)
Query: 357 FEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELR 416
F D H LD ++ P ++ ++L G++V VV Q ET
Sbjct: 276 FRYDEHPSEAHLD-RFASAS-----IPVHRLPVHAKRLVAAGHKVGVVRQIETAAL---- 325
Query: 417 RKEKGSKDKVVKREICAVVTKGTLTE--GELLSANPDAS------YLMALTESNQSPASQ 468
+K +++ R++C V TKGT + GE+ A AS YL+ LTE+ +
Sbjct: 326 KKAGDNRNAPFVRKLCEVYTKGTYIDEMGEM-DAQTGASGAHSGGYLLCLTETAAKGSGT 384
Query: 469 STDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAI- 527
G+ V AT II P E++ LS TE+ +
Sbjct: 385 DEKVDVGLVAVQPATGDIIYDSFEDGFMRSEIETRLLHISPCELLI-VGQLSKATEKLVK 443
Query: 528 -LRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTC 586
L + + + D + +TT E + + A L K + + A D +
Sbjct: 444 HLSGSASNVFGDRTRVERVAKGKTTPAEASSHVTKFYAGKL-KGSTQDDRAAALLDKVLN 502
Query: 587 LP 588
LP
Sbjct: 503 LP 504
>TIGR_CMR|NSE_0335 [details] [associations]
symbol:NSE_0335 "DNA mismatch repair protein MutS"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_506224.1 STRING:Q2GE72
GeneID:3931998 KEGG:nse:NSE_0335 PATRIC:22680759
ProtClustDB:CLSK2528033 BioCyc:NSEN222891:GHFU-360-MONOMER
Uniprot:Q2GE72
Length = 815
Score = 181 (68.8 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
Identities = 49/162 (30%), Positives = 88/162 (54%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM-----KGEQ-PHCGFPER 385
K++ E + ++ D V+F+++G FYE+F DA + L L KG+ P CG P
Sbjct: 10 KRYLEVRCQYPDAVVFYRVGDFYEMFFEDAREVSHLLGLHLTRRGTYKGKDIPMCGVPVS 69
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ + + KL + G +V + EQ ET E+ K++G+ +V+R++ +VT GTLTE L
Sbjct: 70 SCEVYINKLVKLGRKVAICEQLETAEEA----KKRGAT-AIVRRDVVRLVTPGTLTEDNL 124
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRII 487
L + + +YL+ + +P G+ +D++T +I+
Sbjct: 125 LVSGEN-NYLLCV-----APGKNE----IGLAWLDISTKKIV 156
Score = 132 (51.5 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
Identities = 31/95 (32%), Positives = 52/95 (54%)
Query: 646 YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRER 705
Y+ LDA + LE+ E+ G+ + L ++ TA GKRLL++++ PL + I+ R
Sbjct: 267 YLALDASTIRGLELIESQTPGEKNSLLQV-IDQTCTAGGKRLLKSYIVSPLISVEEIQAR 325
Query: 706 QDAVAGLRGVNQPFALEFRKALSRLPDMERLLARL 740
QD V + + + R L+ +PD ER L+R+
Sbjct: 326 QDKVEFFF-IQEELRKKVRTELANIPDAERALSRI 359
Score = 65 (27.9 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
Identities = 22/94 (23%), Positives = 41/94 (43%)
Query: 869 DTSITYVTIGKDL---YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQA 925
+T I + +GK+ Y +EVP+S + R S RY T ++ L ++++A
Sbjct: 461 NTGINSLKLGKNNLIGYYVEVPKSAPLLDSEVFIHRQSLLNNIRYTTLELQNLEAQIAKA 520
Query: 926 ESEKESALKSILQRLIGQFCEHHNKWRQMVAATA 959
+ + L G+ ++M+AA A
Sbjct: 521 NENYRKLELELFRELCGKILASEGPLKEMIAAIA 554
>TIGR_CMR|CBU_1056 [details] [associations]
symbol:CBU_1056 "DNA mismatch repair protein MutS"
species:227377 "Coxiella burnetii RSA 493" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_820057.2
ProteinModelPortal:Q83CQ2 SMR:Q83CQ2 PRIDE:Q83CQ2 GeneID:1208957
KEGG:cbu:CBU_1056 PATRIC:17930837
BioCyc:CBUR227377:GJ7S-1048-MONOMER Uniprot:Q83CQ2
Length = 859
Score = 155 (59.6 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 49/167 (29%), Positives = 82/167 (49%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM-KGEQ-----PHCGFPER 385
+Q+ K+++ D ++F++MG FYELF DA AK L++ +G+ P G P
Sbjct: 22 RQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAGHAIPMAGVPYH 81
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ KL R G V++ EQ P KG V RE+ ++T GT+++ L
Sbjct: 82 AVENYLTKLVRLGESVVICEQIGDPAT------SKGP----VAREVTRIITPGTVSDEAL 131
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVM 492
L + D + LM + Q DR FGI +D+ + R ++ +++
Sbjct: 132 LDEHRDNT-LMVI--------HQEKDR-FGIATLDITSGRFLIQEII 168
Score = 133 (51.9 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 33/94 (35%), Positives = 55/94 (58%)
Query: 647 MVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706
+ +DA NLE+ N + G+ +L L+H T G RLLR W+ RPL + L+++RQ
Sbjct: 272 LFIDANTRRNLELITNLQ-GEEVHSLAWLLDHTATPMGSRLLRRWINRPLRDQILLQQRQ 330
Query: 707 DAVAGLRGVNQPFALEFRKALSRLPDMERLLARL 740
+AV+ L + + E + L + D+ER++AR+
Sbjct: 331 NAVSTL--LEKRNYSEIYENLRHIGDLERIVARI 362
Score = 91 (37.1 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 42/160 (26%), Positives = 73/160 (45%)
Query: 797 LHHILT--P-GKGLPAIVSILKHFKDAFDWVEA---NNSGRIIPHGGVDMD-YDSACKKV 849
LH LT P K L I + L F + F ++ N +I GGV D YD+ ++
Sbjct: 385 LHQQLTNLPLNKQLQEIKNNLGLFDELFRLLKKAIIENPPIVIRDGGVIADGYDAPLDEL 444
Query: 850 KEIEASLTKHLKE-QRKLLGDTSITYVTIGKDL---YLLEVPESLRGSVPRDYELRSSKK 905
+ + + + L + +++ T I V +G + Y +E+ + P +Y R + K
Sbjct: 445 RNMSTNSHQFLIDLEQQERERTKINTVKVGYNRIHGYYIEISRAQAKQAPTEYIRRQTLK 504
Query: 906 GFFRYWTPNIK----KLLGELSQAESEKESALKSILQRLI 941
RY TP +K K+L S+A + ++ + +L LI
Sbjct: 505 NVERYITPELKIFEDKVLSSRSRALAREKELYEQLLDTLI 544
Score = 44 (20.5 bits), Expect = 2.4e-11, Sum P(3) = 2.4e-11
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 520 SPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRI 562
+P R + R PL D + L + +A +T+LE +N Y+ I
Sbjct: 305 TPMGSRLLRRWINRPL-RDQILLQQRQNAVSTLLEKRN-YSEI 345
Score = 43 (20.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 509 PVEIIKPANMLSPETERAILRHTRNPLVNDL-VPL 542
P +I+ A E E ++ T+ P N+L +P+
Sbjct: 790 PRSVIQHARQKLEELENPVISETQQPQQNELFLPI 824
>UNIPROTKB|P61667 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000014 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00091 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 173 (66.0 bits), Expect = 2.1e-20, Sum P(3) = 2.1e-20
Identities = 47/142 (33%), Positives = 76/142 (53%)
Query: 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM---KG----E 376
+ L+ +Q+ E K+ H D ++FF++G FYE+F DA ++ LD+ KG +
Sbjct: 1 MSELTPMMRQYLEIKADHPDAILFFRLGDFYEMFLDDAVKASRILDITLTSRNKGGDGAD 60
Query: 377 QPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVT 436
P CG P + + + KL G +V + EQ E P+ + KG +VKRE+ VVT
Sbjct: 61 IPLCGVPFHSAAPYIAKLVEAGEKVAICEQVEDPKSV------KG----IVKREVVKVVT 110
Query: 437 KGTLTEGELLSANPDASYLMAL 458
G + + E LS + +YL++L
Sbjct: 111 PGLVIDAESLSPKEN-NYLLSL 131
Score = 130 (50.8 bits), Expect = 2.1e-20, Sum P(3) = 2.1e-20
Identities = 38/102 (37%), Positives = 52/102 (50%)
Query: 646 YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRER 705
++VLD + NLE+ G G+L L+ VTA G R L+ W+ PL + I ER
Sbjct: 267 FLVLDESSRRNLELNATIGDGKRRGSLLGLLDRTVTAMGGRKLKQWINYPLVSIEKINER 326
Query: 706 QDAVAGLRGVNQPFALEFRKALSRLPDMERLLARL-FASSEA 746
DAV L + F R AL + D+ERL R+ AS+ A
Sbjct: 327 LDAVEELVA-DAEFRQGVRAALDGVYDLERLNGRISLASASA 367
Score = 75 (31.5 bits), Expect = 2.1e-20, Sum P(3) = 2.1e-20
Identities = 42/155 (27%), Positives = 64/155 (41%)
Query: 808 PAIVSILKHFKDAFDWVEANNS--GR-IIP-------HGGV-DMDYDSACKKVKEIEAS- 855
PA ++L +D D + GR I+P GG+ Y S +++ I
Sbjct: 389 PAASTLLARLRDGIDLLADVEELIGRGIVPDPPFVLREGGIIAQGYHSELDELRSISREG 448
Query: 856 --LTKHLKEQRKLLGDTSITYVTIGKDL-YLLEVPESLRGSVPRDYELRSSKKGFFRYWT 912
L+ Q K S V K Y +EV +S ++P DY R + R+ T
Sbjct: 449 KGFIARLEAQEKARTGISSLKVRYNKVFGYYIEVTKSNLSAIPDDYIRRQTLANAERFIT 508
Query: 913 PNIKKLLGELSQAES---EKESAL-KSILQRLIGQ 943
P +K+ ++ AE E E AL + I QR+ Q
Sbjct: 509 PELKEYEEKVLGAEDRIVELEYALFQDIRQRVAAQ 543
>TIGR_CMR|GSU_1822 [details] [associations]
symbol:GSU_1822 "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000014 InterPro:IPR000432
InterPro:IPR005748 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00091 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 GO:GO:0004871
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 173 (66.0 bits), Expect = 2.1e-20, Sum P(3) = 2.1e-20
Identities = 47/142 (33%), Positives = 76/142 (53%)
Query: 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM---KG----E 376
+ L+ +Q+ E K+ H D ++FF++G FYE+F DA ++ LD+ KG +
Sbjct: 1 MSELTPMMRQYLEIKADHPDAILFFRLGDFYEMFLDDAVKASRILDITLTSRNKGGDGAD 60
Query: 377 QPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVT 436
P CG P + + + KL G +V + EQ E P+ + KG +VKRE+ VVT
Sbjct: 61 IPLCGVPFHSAAPYIAKLVEAGEKVAICEQVEDPKSV------KG----IVKREVVKVVT 110
Query: 437 KGTLTEGELLSANPDASYLMAL 458
G + + E LS + +YL++L
Sbjct: 111 PGLVIDAESLSPKEN-NYLLSL 131
Score = 130 (50.8 bits), Expect = 2.1e-20, Sum P(3) = 2.1e-20
Identities = 38/102 (37%), Positives = 52/102 (50%)
Query: 646 YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRER 705
++VLD + NLE+ G G+L L+ VTA G R L+ W+ PL + I ER
Sbjct: 267 FLVLDESSRRNLELNATIGDGKRRGSLLGLLDRTVTAMGGRKLKQWINYPLVSIEKINER 326
Query: 706 QDAVAGLRGVNQPFALEFRKALSRLPDMERLLARL-FASSEA 746
DAV L + F R AL + D+ERL R+ AS+ A
Sbjct: 327 LDAVEELVA-DAEFRQGVRAALDGVYDLERLNGRISLASASA 367
Score = 75 (31.5 bits), Expect = 2.1e-20, Sum P(3) = 2.1e-20
Identities = 42/155 (27%), Positives = 64/155 (41%)
Query: 808 PAIVSILKHFKDAFDWVEANNS--GR-IIP-------HGGV-DMDYDSACKKVKEIEAS- 855
PA ++L +D D + GR I+P GG+ Y S +++ I
Sbjct: 389 PAASTLLARLRDGIDLLADVEELIGRGIVPDPPFVLREGGIIAQGYHSELDELRSISREG 448
Query: 856 --LTKHLKEQRKLLGDTSITYVTIGKDL-YLLEVPESLRGSVPRDYELRSSKKGFFRYWT 912
L+ Q K S V K Y +EV +S ++P DY R + R+ T
Sbjct: 449 KGFIARLEAQEKARTGISSLKVRYNKVFGYYIEVTKSNLSAIPDDYIRRQTLANAERFIT 508
Query: 913 PNIKKLLGELSQAES---EKESAL-KSILQRLIGQ 943
P +K+ ++ AE E E AL + I QR+ Q
Sbjct: 509 PELKEYEEKVLGAEDRIVELEYALFQDIRQRVAAQ 543
>UNIPROTKB|P49849 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0030983
GO:GO:0008094 EMBL:U27343 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
GO:GO:0032300 KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 PIR:C69663
RefSeq:NP_389586.2 ProteinModelPortal:P49849 SMR:P49849
EnsemblBacteria:EBBACT00000003342 GeneID:939501 KEGG:bsu:BSU17040
PATRIC:18975215 GenoList:BSU17040 BioCyc:BSUB:BSU17040-MONOMER
Uniprot:P49849
Length = 858
Score = 187 (70.9 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
Identities = 43/119 (36%), Positives = 70/119 (58%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK-----GEQ-PHCGFPER 385
+Q+ + K++H D +FF++G FYE+F DA ++EL++ E+ P CG P
Sbjct: 9 QQYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMCGVPYH 68
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE 444
+ S +E+L +KGY+V + EQTE P + KG VVKRE+ ++T GT+ +G+
Sbjct: 69 SASAYIEQLIKKGYKVAICEQTEDP------KAAKG----VVKREVVQLITPGTVMDGK 117
Score = 139 (54.0 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
Identities = 74/304 (24%), Positives = 138/304 (45%)
Query: 647 MVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706
M +D + NLE+ E RS + G+L L+ TA G RLL+ W+ RPL I ERQ
Sbjct: 250 MKIDLYSKRNLELTETIRSKNKKGSLLWLLDETKTAMGGRLLKQWIDRPLIRVNQIEERQ 309
Query: 707 DAVAGLRGVNQPFALE-FRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQ- 764
+ V L ++ F E R+ L + D+ERL R+ A N R+ ++ +++ K+
Sbjct: 310 EMVETL--MSHFFEREDLRERLKEVYDLERLAGRV-AFGNVNARD---LIQLKESLKQVP 363
Query: 765 -LQEFISALHGCELMDQA--CSSLGAILENTESRQLHHI-LTPGKG---LPAIVSILKHF 817
+++ +++L + ++A G +LE E + L+ +G L +
Sbjct: 364 GIKQLVASLAHDKAKERAKRIDPCGDVLELLEEALYENPPLSVKEGNLIKDGYNQKLDEY 423
Query: 818 KDAF----DWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTK---HLKEQRKLLGDT 870
+DA DW+ A + + G+ KV +TK HL E+ +
Sbjct: 424 RDASRNGKDWI-ARLEQQEREYTGI-RSLKVGFNKVFGYYIEVTKANLHLLEEGRYERKQ 481
Query: 871 SIT----YVTIG---KDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELS 923
++T Y+T K+ +LE ++ +YEL + + + + P +++L ++S
Sbjct: 482 TLTNAERYITPELKEKEALILEAENNI---CELEYELFTELREKVKQYIPRLQQLAKQMS 538
Query: 924 QAES 927
+ ++
Sbjct: 539 ELDA 542
>TIGR_CMR|SPO_0011 [details] [associations]
symbol:SPO_0011 "DNA mismatch repair protein MutS"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_165284.1
ProteinModelPortal:Q5LWH0 PRIDE:Q5LWH0 GeneID:3194479
KEGG:sil:SPO0011 PATRIC:23373251 Uniprot:Q5LWH0
Length = 877
Score = 209 (78.6 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 60/161 (37%), Positives = 84/161 (52%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK-----GEQ-PHCGFPERN 386
Q+ E K + D ++F++MG FYE+F DA A+ LD+ K GE P CG P
Sbjct: 10 QYLEIKEAYADALLFYRMGDFYEMFFDDAVAAAEALDIALTKRGKHEGEDIPMCGVPVHA 69
Query: 387 FSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELL 446
+ L RKG+RV V EQ E+P + K++GSK VV+R++ +VT GTLTE LL
Sbjct: 70 AEGYLLTLIRKGFRVAVCEQMESPAEA----KKRGSKS-VVRRDVVRLVTPGTLTEDALL 124
Query: 447 SANPDASYLMALTESNQSPASQSTDRCFG-ICVVDVATSRI 486
A ++L+A E A D G V+ V R+
Sbjct: 125 EARRH-NFLVAYAEVRSGAALAWADISTGDFHVMPVTRPRL 164
Score = 116 (45.9 bits), Expect = 7.4e-20, Sum P(2) = 7.4e-20
Identities = 34/99 (34%), Positives = 50/99 (50%)
Query: 642 AKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGL 701
A+ M +DA NLE+ S SG+ G+L + ++ VT G RLL L P N +
Sbjct: 263 AEDRVMQIDAATRRNLEL-TRSLSGERGGSLLSVIDRTVTPGGARLLEQRLGSPSRNLDV 321
Query: 702 IRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARL 740
I R A+ + A + R AL + PD++R L+RL
Sbjct: 322 IHARLSALDFCID-HSTLAADLRAALRKTPDLDRALSRL 359
>SGD|S000000688 [details] [associations]
symbol:MSH3 "Mismatch repair protein" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IEA;IDA] [GO:0000735 "removal of
nonhomologous ends" evidence=IGI;IMP;TAS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0032135 "DNA insertion or deletion
binding" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000000688 GO:GO:0005524 GO:GO:0005737
GO:GO:0003684 EMBL:X59720 EMBL:BK006937 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032135 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M EMBL:X64954 EMBL:M96250
PIR:S19508 RefSeq:NP_010016.2 ProteinModelPortal:P25336 SMR:P25336
DIP:DIP-2422N IntAct:P25336 MINT:MINT-633647 STRING:P25336
PaxDb:P25336 PeptideAtlas:P25336 PRIDE:P25336 EnsemblFungi:YCR092C
GeneID:850454 KEGG:sce:YCR092C CYGD:YCR092c
GeneTree:ENSGT00550000074949 NextBio:966078 Genevestigator:P25336
GermOnline:YCR092C Uniprot:P25336
Length = 1018
Score = 206 (77.6 bits), Expect = 9.1e-20, Sum P(2) = 9.1e-20
Identities = 86/330 (26%), Positives = 152/330 (46%)
Query: 632 LLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTW 691
L+P S + A K +M+LD +L++L++F + G G+L+ L+H T+FG R+LR W
Sbjct: 404 LIP-SIYSPFASKIHMLLDPNSLQSLDIF--THDG-GKGSLFWLLDHTRTSFGLRMLREW 459
Query: 692 LARPLYNSGLIRERQDAVAGLRG-VNQPFALE-FRKALSRLPDMERLLARLFASSEANGR 749
+ +PL + I ER DA+ + +N E + L+ PD+ R L R+ G
Sbjct: 460 ILKPLVDVHQIEERLDAIECITSEINNSIFFESLNQMLNHTPDLLRTLNRIMY-----GT 514
Query: 750 NSNKVVLYEDAAKKQLQEFIS--ALHGCELMDQACSSLGAILENTESRQLHHILTPGKGL 807
S K V + KQ+ F+ +H L + SS G I +S L + + L
Sbjct: 515 TSRKEVYFY---LKQITSFVDHFKMHQSYLSEHFKSSDGRI--GKQSPLLFRLFSELNEL 569
Query: 808 PAIVSILKHFKDAFDW---VEANNSGRIIPHGGVDMDYDSA--CKKVKEIEASLTKHLKE 862
+ L HF + +E N+ +++ ++ +YD + K++ S+ LKE
Sbjct: 570 LSTTQ-LPHFLTMINVSAVMEKNSDKQVMDFFNLN-NYDCSEGIIKIQRESESVRSQLKE 627
Query: 863 Q-RKLLGDTSITYVTIGKDL-YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLG 920
+ ++ Y+ ++ YL+EV S +P D+ ++ K R+ TP +KL
Sbjct: 628 ELAEIRKYLKRPYLNFRDEVDYLIEVKNSQIKDLPDDWIKVNNTKMVSRFTTPRTQKLTQ 687
Query: 921 ELSQAES----EKESALKSILQRLIGQFCE 946
+L + E E K L ++ ++ E
Sbjct: 688 KLEYYKDLLIRESELQYKEFLNKITAEYTE 717
Score = 120 (47.3 bits), Expect = 9.1e-20, Sum P(2) = 9.1e-20
Identities = 37/124 (29%), Positives = 62/124 (50%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGE------QP------- 378
KQ + K H DKV+ ++G Y+ F DA ++ L ++ + G+ P
Sbjct: 137 KQVKDLKMHHRDKVLVIRVGYKYKCFAEDAVTVSRILHIKLVPGKLTIDESNPQDCNHRQ 196
Query: 379 --HCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKG-SKDKVVKREICAVV 435
+C FP+ ++++E+L +V VVEQ ET +++ + G SK V +R+I V
Sbjct: 197 FAYCSFPDVRLNVHLERLVHHNLKVAVVEQAETSA---IKKHDPGASKSSVFERKISNVF 253
Query: 436 TKGT 439
TK T
Sbjct: 254 TKAT 257
Score = 38 (18.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 547 DAETT--VLEIKNIYNRITAESLNKADSN 573
DA T +L IK + ++T + N D N
Sbjct: 165 DAVTVSRILHIKLVPGKLTIDESNPQDCN 193
>TAIR|locus:2131829 [details] [associations]
symbol:MSH3 "AT4G25540" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006200 "ATP catabolic process" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030983 "mismatched
DNA binding" evidence=IDA] [GO:0007126 "meiosis" evidence=RCA]
[GO:0007129 "synapsis" evidence=RCA] [GO:0009410 "response to
xenobiotic stimulus" evidence=RCA] [GO:0048522 "positive regulation
of cellular process" evidence=RCA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003684 EMBL:AL022197 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032300 GO:GO:0000404
EMBL:AJ007791 IPI:IPI00524241 PIR:T05793 PIR:T51613
RefSeq:NP_194284.2 UniGene:At.506 ProteinModelPortal:O65607
SMR:O65607 STRING:O65607 PaxDb:O65607 PRIDE:O65607
EnsemblPlants:AT4G25540.1 GeneID:828659 KEGG:ath:AT4G25540
TAIR:At4g25540 HOGENOM:HOG000029776 InParanoid:O65607 KO:K08736
OMA:KRTKSIY PhylomeDB:O65607 ProtClustDB:CLSN2680081
Genevestigator:O65607 GermOnline:AT4G25540 Uniprot:O65607
Length = 1081
Score = 272 (100.8 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 124/525 (23%), Positives = 220/525 (41%)
Query: 318 YLPP-DFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKG 375
Y+P R + ++Q E KSK+ D V+ ++G Y F DA + A+ L + +M
Sbjct: 94 YVPETSSSRKYTPLEQQVVELKSKYPDVVLMVEVGYRYRFFGEDAEIAARVLGIYAHMDH 153
Query: 376 EQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVV 435
P + +V +L GY++ VV+QTET + ++ R + A+
Sbjct: 154 NFMTASVPTFRLNFHVRRLVNAGYKIGVVKQTETAAI----KSHGANRTGPFFRGLSALY 209
Query: 436 TKGTLTEGELLSAN--------PDASYLMALTESNQSPAS------QSTDRCFGICVVDV 481
TK TL E +S +++L+ + + + S D G+ V++
Sbjct: 210 TKATLEAAEDISGGCGGEEGFGSQSNFLVCVVDERVKSETLGCGIEMSFDVRVGVVGVEI 269
Query: 482 ATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVP 541
+T ++ + P E++ LS +TE+ ++ H P N V
Sbjct: 270 STGEVVYEEFNDNFMRSGLEAVILSLSPAELLL-GQPLSQQTEKFLVAHA-GPTSNVRVE 327
Query: 542 LSEF--WDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGD 599
+ + V E+ ++ +I+A +L D +A G++CL + +++
Sbjct: 328 RASLDCFSNGNAVDEVISLCEKISAGNLE--DDKEMKLEAAEKGMSCLT--VHTIMNMPH 383
Query: 600 SGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEV 659
Q L AL T +LK+ + L + A F L + M L A L+ LEV
Sbjct: 384 LTVQAL-AL--TFCHLKQFGFERILYQGASFRSL--------SSNTEMTLSANTLQQLEV 432
Query: 660 FENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVA------GLR 713
+N+ G SG+L+ +NH +T +G RLLR W+ PL + LI R DAV+ G
Sbjct: 433 VKNNSDGSESGSLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLISARLDAVSEISACMGSH 492
Query: 714 GVNQPFALEFRKALSRL---PDMERLLAR-LFASSEANGRNSNKVVLYEDAAKKQLQEFI 769
+Q + + R P+ +L+ L A S ++ ++ AK EFI
Sbjct: 493 SSSQLSSELVEEGSERAIVSPEFYLVLSSVLTAMSRSSDIQRGITRIFHRTAKAT--EFI 550
Query: 770 SALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSIL 814
+ + L + LG I +++E R + L ++S++
Sbjct: 551 AVMEAILLAGKQIQRLG-IKQDSEMRSMQSATVRSTLLRKLISVI 594
>UNIPROTKB|Q7NLT8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:251221 "Gloeobacter violaceus PCC 7421" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000045 GenomeReviews:BA000045_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_923979.1 ProteinModelPortal:Q7NLT8
GeneID:2599151 KEGG:gvi:gvip140 PATRIC:22041477
BioCyc:GVIO251221:GH9A-1085-MONOMER Uniprot:Q7NLT8
Length = 890
Score = 150 (57.9 bits), Expect = 1.1e-19, Sum P(4) = 1.1e-19
Identities = 50/154 (32%), Positives = 72/154 (46%)
Query: 620 LDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHC 679
L + LL + +P G Y++LD NLE+ + R G G+L L+
Sbjct: 304 LVQHLLETQRGVSIPLEGIRTYTLSQYLILDHQTRRNLELTQTVRDGAQYGSLLWALDRT 363
Query: 680 VTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE-FRKALSRLPDMERLLA 738
T G R LR WL +PL ++ I RQD+VA L ++ E ++ L + D+ERL
Sbjct: 364 RTVMGGRALRRWLLQPLLDTRAIGRRQDSVAEL--YDEGLLRERLQRILESVYDLERLAG 421
Query: 739 RLFASSEANGRNSNKVVLYEDAAK-KQLQEFISA 771
R S AN R+ V L E K L E ++A
Sbjct: 422 RC-GSGTANARDL--VALGESLLKLPALAEAVAA 452
Score = 146 (56.5 bits), Expect = 1.1e-19, Sum P(4) = 1.1e-19
Identities = 41/129 (31%), Positives = 65/129 (50%)
Query: 313 DPRTLYLPPDFLR----NLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKEL 368
DP T DF R +L+ +Q+ E K++H ++ ++MG FYE F DA + ++EL
Sbjct: 3 DPATQLSQWDFRRFARSDLTPMLQQYVEVKAQHPHCLLLYRMGDFYETFLADAEIVSREL 62
Query: 369 DLQYMKGEQ--------PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEK 420
++ + G Q P G P +L KGY V++ +Q E+PEQ KE+
Sbjct: 63 EI-VLTGRQAGDKIGRIPMAGIPHHALERYCAQLIEKGYAVVICDQVESPEQA----KER 117
Query: 421 GSKDKVVKR 429
+ KV +R
Sbjct: 118 ARQAKVARR 126
Score = 74 (31.1 bits), Expect = 1.1e-19, Sum P(4) = 1.1e-19
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 420 KGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVV 479
+G++ +V+R + V+T GT+ E +LL + +YL AL ++ + C+G+
Sbjct: 149 EGAESVLVRRAVTRVLTPGTVLEDQLLVGRRN-NYLAALVQAGE---------CWGLAFA 198
Query: 480 DVATSRIILGQV 491
D++T + Q+
Sbjct: 199 DISTGEFQVTQL 210
Score = 46 (21.3 bits), Expect = 1.1e-19, Sum P(4) = 1.1e-19
Identities = 16/78 (20%), Positives = 28/78 (35%)
Query: 882 YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLI 941
Y L + P +Y + + RY TP +K+ + A+ + I L
Sbjct: 541 YYLSISRGKAEKAPPEYLRKQTLTNEERYITPELKERETRILNAQQQTNQLEYDIFNILR 600
Query: 942 GQFCEHHNKWRQMVAATA 959
+ H + RQ+ A
Sbjct: 601 QEAGRHVSALRQVARRVA 618
>UNIPROTKB|Q0J8X3 [details] [associations]
symbol:Os04g0682900 "Os04g0682900 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533
GO:GO:0005524 GO:GO:0003684 EMBL:AP008210 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 GO:GO:0000404 KO:K08736
RefSeq:NP_001054300.1 UniGene:Os.58403
EnsemblPlants:LOC_Os04g58630.2 GeneID:4337442 KEGG:osa:4337442
Gramene:Q0J8X3 OMA:FIASVDQ Uniprot:Q0J8X3
Length = 813
Score = 270 (100.1 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 149/669 (22%), Positives = 277/669 (41%)
Query: 331 QKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDL-QYMKGEQPHCGFPERNFSM 389
++Q + K++H D ++ ++G + F DA V A L + + P
Sbjct: 103 EQQVVDLKARHPDVLLMVEVGYRFRFFGEDAAVAASVLGIIAHPDHSFLTASIPTFRLGF 162
Query: 390 NVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTL--TEGELLS 447
+V +L G++V VV QTET ++ G+ R + AV T+ T+ GEL
Sbjct: 163 HVRRLVAAGHKVGVVRQTETAA-IKAAHGG-GAAGTPFARGLSAVYTRATIEAAAGELEG 220
Query: 448 AN-PD--ASYLMALTESN-QSPASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXX 503
PD + YL+ + + + ++ + G+ ++V+T ++ G+ M
Sbjct: 221 GGAPDEGSRYLVCVVDKEVDAMGTEGFEVKIGVVAIEVSTGEVVHGEFMDGVSRNGLEAV 280
Query: 504 XXXXRPVEIIKPANMLSPETERAILRHTRNPLVNDLVP-LSEFWDAETTVL-EIKNIYNR 561
PVE+I +S TE+ ++ + P N V S +E L E+ +++ +
Sbjct: 281 LLGLAPVEVIL-GTPISSATEKLMVAYA-GPTSNVRVERTSRLCFSEGGALAELLSLFEK 338
Query: 562 --ITAESLNKA----DSNVANSQAEG-DGLTCLPGILSELISTGDSGSQVLSALGGTLFY 614
+ A ++ + N N+ G +G+ +P EL V+ AL ++ Y
Sbjct: 339 SGVDAPTVENGRHLMEMNEENNNPRGIEGIMAMP----EL---------VIHALALSVRY 385
Query: 615 LKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYA 674
LK +D ++ F S F M L A L+ LEV +N G G+L+
Sbjct: 386 LKGFGMDR-IICFG-------SSFQPFTANTEMSLSANTLQQLEVLKNHSDGSLDGSLFQ 437
Query: 675 QLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGL-RGV-NQPFA-------LEFRK 725
+N+ TAFG RL R WL PL + I R DAV+ + + +Q ++ ++
Sbjct: 438 TMNNTCTAFGSRLFRHWLTHPLCDRNQICTRHDAVSEISESIGSQQYSTNNLQDEVDMSC 497
Query: 726 ALSRLPDMERLLA---RLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQAC 782
+ S D+ +L+ R+ A + R ++ + AK EF+ + +
Sbjct: 498 SSSVRSDLSTILSSVLRMLAGTLDIQRGITRIFHCKATAK----EFVGVVQAILTAGKQL 553
Query: 783 SSLGAILENTESRQLHHILTPGKGLPAIVSILKH---FKDAFDWV-----EANNSGRIIP 834
L +LE+T++ H L +++ +A V +A + G ++
Sbjct: 554 QKL--VLEDTDTMSSQHRTVHSPLLRRLINTASSCTVLANAATLVSCLNKDAADQGDMLN 611
Query: 835 H--GGVDM--DYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESL 890
VD + V+ + L + E RK LG ++ + T+ +L+E+P
Sbjct: 612 LFIASVDQFPEVAEGHATVEMAKQKLELLITEYRKQLGVRNLEFKTVAGTTHLIELPVDR 671
Query: 891 RGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNK 950
+ VP + +S K RY TP + K L L A+ + ++ + F ++ +
Sbjct: 672 K--VPSSWMKVNSTKKTIRYHTPEVSKNLENLLLAKEKLAVICRTTWNNFLMDFGRYYAQ 729
Query: 951 WRQMVAATA 959
++ V + A
Sbjct: 730 FQATVKSLA 738
>UNIPROTKB|Q7SD11 [details] [associations]
symbol:msh-3 "DNA mismatch repair protein msh-3"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0008094
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 GO:GO:0000735 HOGENOM:HOG000029776 KO:K08736
OMA:KRTKSIY OrthoDB:EOG42NN7M EMBL:AABX02000089 RefSeq:XP_963874.1
ProteinModelPortal:Q7SD11 STRING:Q7SD11
EnsemblFungi:EFNCRT00000009637 GeneID:3880023 KEGG:ncr:NCU08115
Uniprot:Q7SD11
Length = 1145
Score = 141 (54.7 bits), Expect = 4.5e-19, Sum P(3) = 4.5e-19
Identities = 37/108 (34%), Positives = 58/108 (53%)
Query: 638 FGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLY 697
F + + +M+++ LE+LEV+ N+ G+L L+ T FG+RLLR W+ RPL
Sbjct: 491 FQSFSTRQHMLINGTTLESLEVYRNATDHSEKGSLLWALDKTHTRFGQRLLRKWIGRPLL 550
Query: 698 NSGLIRERQDAVAGLRGVNQPFALEFRKALSRLP----DMERLLARLF 741
+ + ER AV L NQ A + K ++ L D+ER L R++
Sbjct: 551 DQQRLEERVSAVEELLN-NQSTA-KVDKLVNMLKSIKADLERSLIRIY 596
Score = 117 (46.2 bits), Expect = 4.5e-19, Sum P(3) = 4.5e-19
Identities = 31/110 (28%), Positives = 48/110 (43%)
Query: 849 VKEIEASLTKHLKEQRKLLGD-TSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGF 907
+ +E L +H E K LG + YVT+ YL+EVP + VP + S K
Sbjct: 686 IAAVEQDLDEHRSEAAKDLGKKVPVNYVTVAGIEYLIEVPNTDLKRVPASWAKISGTKKV 745
Query: 908 FRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAA 957
R+ TP + +L+ E Q + SA L+ Q + R V++
Sbjct: 746 SRFHTPTVLRLIAERDQHKESLASACDQAFSDLLSQIAGEYQPLRDAVSS 795
Score = 113 (44.8 bits), Expect = 4.5e-19, Sum P(3) = 4.5e-19
Identities = 39/135 (28%), Positives = 63/135 (46%)
Query: 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-----EQP--- 378
L+ + Q+ E K KHMD ++ ++G + F DA + A+EL + + G E P
Sbjct: 186 LTPMELQFLEIKRKHMDTLLIVEVGYKFRFFGEDARIAARELSIVCIPGKFRYDEHPSEA 245
Query: 379 H------CGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREIC 432
H P ++ ++L GY+V VV Q ET +K +++ R++
Sbjct: 246 HLDRFASASIPVHRLPVHAKRLVAAGYKVGVVRQIETAAL----KKAGDNRNAPFVRKLT 301
Query: 433 AVVTKGTLTE--GEL 445
V TKGT + GEL
Sbjct: 302 NVYTKGTYIDETGEL 316
Score = 85 (35.0 bits), Expect = 8.5e-16, Sum P(4) = 8.5e-16
Identities = 48/191 (25%), Positives = 73/191 (38%)
Query: 357 FEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELR 416
F D H LD ++ P ++ ++L GY+V VV Q ET
Sbjct: 236 FRYDEHPSEAHLD-RFASAS-----IPVHRLPVHAKRLVAAGYKVGVVRQIETAAL---- 285
Query: 417 RKEKGSKDKVVKREICAVVTKGTLTE--GEL-----LSANPDASYLMALTESNQSPAS-Q 468
+K +++ R++ V TKGT + GEL + YL+ LTE+ PA
Sbjct: 286 KKAGDNRNAPFVRKLTNVYTKGTYIDETGELDQPGETTGASSGGYLLCLTET---PAKGM 342
Query: 469 STDRCF--GICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERA 526
TD GI V AT II + P E + + LS T++
Sbjct: 343 GTDEKVNVGIIAVQPATGDIIYDEFEDGFMRREIETRLLHISPCEFLIVGD-LSKATDK- 400
Query: 527 ILRHTRNPLVN 537
+++H N
Sbjct: 401 LIQHLSGSSTN 411
Score = 40 (19.1 bits), Expect = 8.5e-16, Sum P(4) = 8.5e-16
Identities = 12/28 (42%), Positives = 12/28 (42%)
Query: 291 KFHFLGPDRRDAKRRR-----PGDVYYD 313
KF F G D R A R PG YD
Sbjct: 212 KFRFFGEDARIAARELSIVCIPGKFRYD 239
>TIGR_CMR|DET_1219 [details] [associations]
symbol:DET_1219 "DNA mismatch repair protein MutS"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_181932.1 ProteinModelPortal:Q3Z767
STRING:Q3Z767 GeneID:3229472 KEGG:det:DET1219 PATRIC:21609473
OMA:HIHAKTL BioCyc:DETH243164:GJNF-1220-MONOMER Uniprot:Q3Z767
Length = 858
Score = 181 (68.8 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 49/167 (29%), Positives = 88/167 (52%)
Query: 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDL-----QYMKG-EQ 377
+ N++ +KQ+ + K + + ++FF++G FYE FE DA + A+EL++ + KG +
Sbjct: 1 MENITPLRKQYLDIKKNYPEAIVFFRLGDFYETFEEDARIAARELEIVLTSREMGKGLKV 60
Query: 378 PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTK 437
P G P + +L +GY+V + EQ P + KG +VKR++ +VT
Sbjct: 61 PLAGIPYHALDNYLSRLINRGYKVAICEQVTKPGET------KG----LVKRQVTRLVTP 110
Query: 438 GTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATS 484
GT+ E LL + + ++L++L + D C G+ D++TS
Sbjct: 111 GTVVEPNLLDSKQN-NFLLSLYLTE--------DSC-GLAFADISTS 147
Score = 135 (52.6 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 45/136 (33%), Positives = 67/136 (49%)
Query: 605 LSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSR 664
+SA G L YL+++ ++ L+ + E L D YM +D+ L NLE+F +S
Sbjct: 227 VSAAGALLNYLEET--QKSSLK--QLERLAAYTISD-----YMQIDSHTLSNLEIFRSSG 277
Query: 665 SGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFR 724
G+L L+ TA G RLLR +L +PL I +R AV + A
Sbjct: 278 GNSLKGSLLGVLDQTKTAMGGRLLRKFLGQPLLRQEDIEKRLSAVDYFFEESLARA-SLA 336
Query: 725 KALSRLPDMERLLARL 740
KAL ++ DMER+ R+
Sbjct: 337 KALGQIADMERIANRI 352
Score = 49 (22.3 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 759 DAAKKQL-QEF----ISALHGCELMDQACSSLGAILENTESRQ 796
D A+++L + F +SA +GCE + A S+ GA+L E Q
Sbjct: 200 DVARERLLKHFECQNLSA-YGCENLPLAVSAAGALLNYLEETQ 241
Score = 38 (18.4 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 668 SSGTLYAQLNHCVTAFGKRLLRTWLARPLYNS 699
S+ A L+ ++AF + +R RPL++S
Sbjct: 541 SNAAALASLD-VLSAFAEVAVRNGYVRPLFHS 571
>TIGR_CMR|CHY_1397 [details] [associations]
symbol:CHY_1397 "DNA mismatch repair protein HexA"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006298 GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
OMA:HYFELTV KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_360229.1 ProteinModelPortal:Q3ACA5
STRING:Q3ACA5 GeneID:3728668 KEGG:chy:CHY_1397 PATRIC:21275925
BioCyc:CHYD246194:GJCN-1396-MONOMER Uniprot:Q3ACA5
Length = 841
Score = 192 (72.6 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 52/169 (30%), Positives = 89/169 (52%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM---KGEQ---PHCGFPER 385
KQ+ + K ++ D ++FF++G FYELF DA + ++EL++ G++ P CG P
Sbjct: 8 KQYLDIKKQYSDCLLFFRLGDFYELFFEDAVIASRELEIVLTGRDAGQEERVPMCGVPYH 67
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ + KL +GY+V + EQ E P +K KG +VKRE+ + T GT+TE
Sbjct: 68 SAQGYIAKLLSRGYKVAICEQVEDP------KKAKG----LVKREVTKIYTPGTVTEEFF 117
Query: 446 LSANPDASYLMALTESNQSPA---SQSTDRCFGICVVDVATSRIILGQV 491
L + +Y++AL E + A ++ + GI VD ++ ++
Sbjct: 118 LQEKTN-NYIIALAEKDGLIALAVAEVSTGYLGITSVDEGKIEVLASEI 165
Score = 111 (44.1 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 35/96 (36%), Positives = 48/96 (50%)
Query: 646 YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRER 705
Y+ D +NLE+ N D+S +L ++ TA G R L+ L +PL N I +R
Sbjct: 246 YLYFDESTRKNLEILRNRE--DNSSSLLGIIDFTQTAMGARKLKEELTKPLLNLKAIADR 303
Query: 706 QDAVAGLRGVNQPFALE-FRKALSRLPDMERLLARL 740
DAV L VN E R+ L L D+ERL +L
Sbjct: 304 LDAVEIL--VNDYELRENLRENLKNLYDLERLSIKL 337
Score = 57 (25.1 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 30/132 (22%), Positives = 58/132 (43%)
Query: 830 GRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDL-YLLEVPE 888
G II +G + D K +E + + + K++R+ G S+ V K Y +EV +
Sbjct: 406 GGIIKNG-YNPTVDEYRKAREEGQDWIINYEKKERERTGIKSLK-VNYNKVFGYFIEVTK 463
Query: 889 SLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALK-SILQRLIGQFCEH 947
+ VP DY+ + + R+ T +K L SEK + L+ + + + ++
Sbjct: 464 ANLHLVPADYQRKQTMVNAERFITEELKHY-ENLILGASEKLANLEYELFCEIRSEILKY 522
Query: 948 HNKWRQMVAATA 959
++ +A A
Sbjct: 523 QEDLKRAASAVA 534
>DICTYBASE|DDB_G0281683 [details] [associations]
symbol:msh3 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032302 "MutSbeta
complex" evidence=ISS;IBA] [GO:0032135 "DNA insertion or deletion
binding" evidence=ISS] [GO:0006312 "mitotic recombination"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0000735 "removal of nonhomologous ends" evidence=ISS]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0281683 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0003684 EMBL:AAFI02000042
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 RefSeq:XP_001134558.1
STRING:Q1ZXH0 EnsemblProtists:DDB0232960 GeneID:8623184
KEGG:ddi:DDB_G0281683 OMA:ATRISHI Uniprot:Q1ZXH0
Length = 1428
Score = 263 (97.6 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 150/664 (22%), Positives = 275/664 (41%)
Query: 331 QKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDL-QYMKGEQPHCGFPERNFSM 389
++Q+ K ++ D V+ + G Y+ F DA V K L++ Y+ +C P +
Sbjct: 457 EQQYIAIKKENPDTVLMVECGYKYKFFGEDAEVANKVLNIYSYVAKNFLNCSIPTQRLFF 516
Query: 390 NVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE----L 445
++ +L GY+V +VEQTET + SK + +R++ V T T + + L
Sbjct: 517 HLRRLVMAGYKVGIVEQTETAALKAI----SSSKSQPFERKLTRVYTSSTFIDDDIDDQL 572
Query: 446 LSANPDASYLMALTES---NQSP---ASQSTDRCFGI-CVVDVATSRI--ILGQVMXXXX 496
S++P +L++ ES N++ Q + GI + +TS I + V
Sbjct: 573 TSSSPQ--FLVSFYESTPKNKNDDVIKKQRDNEEEGIDSSNESSTSTISFVAVSVKTGEI 630
Query: 497 XXXXXXXXXXXRPVEII----KPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTV 552
+E I KP+ +L P T + + VN+ + + ++ + T
Sbjct: 631 IYDTFKDNVMRSQLETILTHIKPSEILIPPTTTTVNKQK----VNNGIGTNHYYFSNLTS 686
Query: 553 LEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTL 612
+K Y + T DS + + + L S + ++ VL + TL
Sbjct: 687 KCLKT-YTKSTNVRTQAMDSQLYDYEYSLGKLIDFYEDESNNNNNNNNCEDVLKFVKSTL 745
Query: 613 -------FYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRS 665
+ S+L+E + F L S F ++VL + NLE+ N
Sbjct: 746 NKEQIICLGILLSYLNE-FIHFGSI-LKVESNFKAFRVSNHLVLPHSTIVNLELLVNESD 803
Query: 666 GDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGL-RGV--NQPFALE 722
G+L +N T G R+ W+ +PL LI+ERQDAV L G+ N P +
Sbjct: 804 NKEKGSLIWLMNRTSTFSGSRMFINWICKPLNQLELIKERQDAVEELVNGIKTNSPPIVS 863
Query: 723 FRKAL-SRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQA 781
S +PD++R L+R++ + + + + +E + +
Sbjct: 864 IISLFKSHIPDLQRNLSRIYYKVQCTPKEFLNTMTSLQRIVELFKEINNNNSSYKFNSTL 923
Query: 782 CSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRI---IPHGGV 838
+S+ + + + G G + +K+F + A G + + V
Sbjct: 924 LNSIFKLQNDNKDGDSDSFDYIG-GEDKLSKRIKYFLSNINKETAKEYGTVGCDKSNLWV 982
Query: 839 DMD-YDS---ACKKVKEIEASLTKHLKEQRKLLGDTSITYVTI-GKDL-YLLEVPESLRG 892
D++ Y+ +K++++E LK RK L S+ Y + G L YLLE+P S +
Sbjct: 983 DLEKYEKIRETKEKIEQVEKEFKNVLKNIRKELSKPSLEYHHMPGLGLEYLLELPPSFK- 1041
Query: 893 SVPRDYELRSSKKGFFRYWTPNIKKLLGELSQA-ESEKESALKSILQRLIGQFCEHHNKW 951
+VP+ + +S + RY P + + L LSQ+ E+ K + +S + +G+F ++ +
Sbjct: 1042 AVPKSWIKVNSTQKMARYHAPEVLEQLKILSQSRETLKIQSQESWIS-FLGEFSVDYSLF 1100
Query: 952 RQMV 955
V
Sbjct: 1101 SNFV 1104
>UNIPROTKB|A9WFZ9 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:324602 "Chloroflexus aurantiacus J-10-fl" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:CP000909 GenomeReviews:CP000909_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:YP_001636542.1 ProteinModelPortal:A9WFZ9
STRING:A9WFZ9 GeneID:5827426 KEGG:cau:Caur_2954 PATRIC:21417221
ProtClustDB:CLSK2477234 BioCyc:CAUR324602:GIXU-3001-MONOMER
Uniprot:A9WFZ9
Length = 966
Score = 206 (77.6 bits), Expect = 9.5e-18, Sum P(2) = 9.5e-18
Identities = 90/327 (27%), Positives = 145/327 (44%)
Query: 646 YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRER 705
YM+LD NLE+ E+ + +L A L+ TA G RLLR W+ +PL ++ R
Sbjct: 334 YMLLDPQTRRNLELLESGGRQGAKASLIAVLDRTCTAMGARLLRRWITQPLIVIEPLQVR 393
Query: 706 QDAVAGLRGVNQPFA-LEFRKALSRLPDMERLLARLFAS-SEANGRNSNKV--VLYE-DA 760
Q AVA L V + A LE R AL+ LPDMER L R+ + A R+ ++ L + A
Sbjct: 394 QHAVARL--VAETMARLEVRSALADLPDMERALNRIAQGITVATPRDMTQLRAALRKLPA 451
Query: 761 AKKQLQEFISALHGCE------LMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSIL 814
+ +Q + L E L+ C+ + +LE R L P PA++
Sbjct: 452 VAQAVQALLPDLLAAEMPGEPPLVFDVCADVLDLLE----RALDD--DP----PALLGSS 501
Query: 815 KHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITY 874
+ + A E R + G D D+ + + + + + ++R+ G S+
Sbjct: 502 NYLRAA---EEGGERPRRVIRPGFDQRLDALIRASRHAQEFIDRLESKERERTGIRSLK- 557
Query: 875 VTIGKDL-YLLEVPESLRGS-VPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESA 932
V + Y +E+ ++ +P YE + + RY T +K G LS A +
Sbjct: 558 VGYNQVFGYYIEISRAVDAKLIPAHYERKQTLVNAERYVTEELKYYEGLLSDARLKLVDL 617
Query: 933 LKSILQRLIGQFCEHHNKWRQMVAATA 959
+ I QRL + H ++ R +AA A
Sbjct: 618 ERDIFQRLCDELQPHLDRLRATIAAVA 644
Score = 100 (40.3 bits), Expect = 9.5e-18, Sum P(2) = 9.5e-18
Identities = 53/255 (20%), Positives = 99/255 (38%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDL-----QYM------KGEQ--- 377
+Q+ + K + D ++ F+ G FYE F+ DA + A+ LD+ +Y K +Q
Sbjct: 11 RQYRKLKEEAADAILLFRFGDFYETFDDDAKLIAELLDITLTRKEYAVDKRLPKDQQKLY 70
Query: 378 -PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVT 436
P G P V +L +GYRV + EQ E + R + + V + V +
Sbjct: 71 APMAGMPYHAVDRYVSELIARGYRVAIAEQLSETEAM---RNDTRPRS-VYAAGLTPVES 126
Query: 437 KGTLTEGELLSANPDASYL---MALTESNQSPASQSTDRC-FGICVVDVATSRIILGQVM 492
G + + ++ + + M +N A+ ++ G+ D++T +
Sbjct: 127 SGKMVQRAIVRVITPGTVIDPAMLPDRTNNYLAAVIVEQGKVGLAYADLSTGEFAAAEFT 186
Query: 493 XXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAI-LRHTRNPLVNDLVPLSEFWDAETT 551
P E++ P + E R L + L DL PL++ +
Sbjct: 187 DARALMQLQAELARLSPAEVLVPDD----EALRLPNLEPVQARLSQDLAPLTK--EEREA 240
Query: 552 VLEIKNIYNRITAES 566
+L + + R+ S
Sbjct: 241 LLPHERVARRLEGAS 255
>UNIPROTKB|O66652 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224324 "Aquifex aeolicus VF5" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE000657 GenomeReviews:AE000657_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 PIR:H70327 RefSeq:NP_213212.1
ProteinModelPortal:O66652 GeneID:1192886 KEGG:aae:aq_308
PATRIC:20958222 HOGENOM:HOG000221406 OMA:ITQTVRD
BioCyc:AAEO224324:GJBH-228-MONOMER Uniprot:O66652
Length = 859
Score = 190 (71.9 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 47/125 (37%), Positives = 70/125 (56%)
Query: 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM-----KGEQ-- 377
+ L+ Q+ FK+++ D ++ F++G FYELF DA++G+KEL L KG++
Sbjct: 6 KELTPMLSQYHYFKNQYPDCLLLFRLGDFYELFYEDAYIGSKELGLVLTSRPAGKGKERI 65
Query: 378 PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTK 437
P CG P + + + KL KGY+V + EQ E P K KG +VKRE+ V+T
Sbjct: 66 PMCGVPYHSANSYIAKLVNKGYKVAICEQVEDPS------KAKG----IVKREVVRVITP 115
Query: 438 GTLTE 442
GT E
Sbjct: 116 GTFFE 120
Score = 107 (42.7 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 33/118 (27%), Positives = 64/118 (54%)
Query: 646 YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRER 705
++ LD A++ LE+ E S G +L+ ++ +T G+R L+ L P + I
Sbjct: 257 FVRLDIKAIKGLEILE-SLEGRKDISLFKVIDRTLTGMGRRRLKFRLLSPFRSREKIERI 315
Query: 706 QDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKK 763
Q+ V L+ N+ L+ R+ L + D+ERL++++ +S+ A R ++V +++ KK
Sbjct: 316 QEGVQELKE-NREALLKIRQILEGMADLERLVSKI-SSNMATPR---ELVYLKNSLKK 368
Score = 53 (23.7 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 22/100 (22%), Positives = 49/100 (49%)
Query: 833 IPHGGVDMDYDSA-CKKVKEIEASLTKHLKE-QRKLLGDTSITYVTIGKDL---YLLEVP 887
+ GG+ + +A +++ I + +L+E ++KL +T I + IG + Y +EV
Sbjct: 413 VKEGGLIREGVNAYLDELRFIRDNAETYLREYEKKLRQETGIQSLKIGYNKVMGYYIEVT 472
Query: 888 ESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAES 927
+ VP + R + R+ T +++L ++ A++
Sbjct: 473 KPNLKYVPSYFRRRQTLSNSERFTTEELQRLEEKILSAQT 512
Score = 45 (20.9 bits), Expect = 8.2e-10, Sum P(3) = 8.2e-10
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 552 VLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGIL 591
+LE+ NI N T +SL D V + DG+ I+
Sbjct: 667 MLEVSNILNNATEKSLVILDE-VGRGTSTYDGIAISKAIV 705
Score = 38 (18.4 bits), Expect = 4.1e-16, Sum P(3) = 4.1e-16
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 916 KKLLGELSQAESEKE 930
+K+L EL + E++KE
Sbjct: 783 RKILRELEEKENKKE 797
Score = 37 (18.1 bits), Expect = 5.2e-16, Sum P(3) = 5.2e-16
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 841 DYDSACKKVKEIEASLTKHLK 861
+Y+ KK++EI+ T L+
Sbjct: 818 EYEEIIKKIEEIDIGNTTPLQ 838
>TIGR_CMR|BA_3905 [details] [associations]
symbol:BA_3905 "DNA mismatch repair protein MutS"
species:198094 "Bacillus anthracis str. Ames" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006298
GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_846152.1
RefSeq:YP_020544.1 RefSeq:YP_029871.1 ProteinModelPortal:Q81WR3
DNASU:1087964 EnsemblBacteria:EBBACT00000010607
EnsemblBacteria:EBBACT00000017303 EnsemblBacteria:EBBACT00000020116
GeneID:1087964 GeneID:2814777 GeneID:2848878 KEGG:ban:BA_3905
KEGG:bar:GBAA_3905 KEGG:bat:BAS3618
BioCyc:BANT260799:GJAJ-3677-MONOMER
BioCyc:BANT261594:GJ7F-3794-MONOMER Uniprot:Q81WR3
Length = 892
Score = 177 (67.4 bits), Expect = 4.3e-17, Sum P(3) = 4.3e-17
Identities = 52/162 (32%), Positives = 79/162 (48%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK---GEQ---PHCGFPER 385
+Q+ + K+ + D +FF++G FYE+F DA A EL++ G P CG P
Sbjct: 9 QQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPMCGVPYH 68
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+E+L KGY+V V EQ E P + KG VV+RE+ ++T GT+ EG
Sbjct: 69 AAKNYIEQLVEKGYKVAVCEQVEDP------KTAKG----VVRREVVQLITPGTMMEGRT 118
Query: 446 LSANPDASYLMALTE-SNQSPASQSTDRCFGICVVDVATSRI 486
+ + ++L ALT + S A D G V + T +
Sbjct: 119 IDEKEN-NFLAALTHFEDGSYALACNDLTTGQNTVTLLTGSV 159
Score = 131 (51.2 bits), Expect = 4.3e-17, Sum P(3) = 4.3e-17
Identities = 35/106 (33%), Positives = 55/106 (51%)
Query: 646 YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRER 705
+M +D + NLE+ E R+ + +G+L L+ TA G R+L+ W+ RPL I ER
Sbjct: 253 FMKIDVHSKRNLELTETLRTKEKTGSLLWLLDKTKTAMGGRMLKQWMERPLIQKERIEER 312
Query: 706 QDAVAGLRGVNQPFALE-FRKALSRLPDMERLLARLFASSEANGRN 750
+ V VN F E ++ L + D+ERL ++ A N R+
Sbjct: 313 LEMVETF--VNDYFLREDLKEKLKEVYDLERLAGKV-AFGNVNARD 355
Score = 38 (18.4 bits), Expect = 4.3e-17, Sum P(3) = 4.3e-17
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 853 EASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPR 896
E +T LKE+ L+ + V + DL+ + E ++ +P+
Sbjct: 491 ERFITDELKEKETLILEAEEKIVQLEYDLFTA-LREEVKVFIPK 533
>TIGR_CMR|SO_3431 [details] [associations]
symbol:SO_3431 "DNA mismatch repair protein MutS"
species:211586 "Shewanella oneidensis MR-1" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_718984.1
ProteinModelPortal:Q8EBR9 SMR:Q8EBR9 GeneID:1171106
KEGG:son:SO_3431 PATRIC:23526550 Uniprot:Q8EBR9
Length = 856
Score = 139 (54.0 bits), Expect = 5.9e-17, Sum P(3) = 5.9e-17
Identities = 37/94 (39%), Positives = 52/94 (55%)
Query: 647 MVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706
+VLDA NLE+ +N SG TL A L++ TA G R+L+ W+ +PL + LI RQ
Sbjct: 269 IVLDAATRRNLELTQNL-SGGRDNTLAAVLDNTATAMGSRMLQRWIHQPLRDHALILARQ 327
Query: 707 DAVAGLRGVNQPFALEFRKALSRLPDMERLLARL 740
AV L + + L L D+ER++ARL
Sbjct: 328 TAVNEL--LETAVHESLHEQLKALGDIERIMARL 359
Score = 138 (53.6 bits), Expect = 5.9e-17, Sum P(3) = 5.9e-17
Identities = 48/176 (27%), Positives = 80/176 (45%)
Query: 322 DFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM-KGEQ--- 377
D L + +Q+ K++H D ++F++MG FYELF DA ++ L + +G+
Sbjct: 7 DDLEKHTPMMRQYLSMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGISLTARGKSGGD 66
Query: 378 --PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVV 435
P G P + KL + G V + EQ P KG V+R++ +V
Sbjct: 67 PIPMAGIPYHAVEGYLAKLVQIGQSVAICEQIGDPAT------SKGP----VERKVVRIV 116
Query: 436 TKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQV 491
T GTLT+ LL D + L A+ + FG +DV++ R ++ ++
Sbjct: 117 TPGTLTDEALLQERQD-NLLAAVYQGKVG---------FGYATLDVSSGRFVIAEL 162
Score = 69 (29.3 bits), Expect = 5.9e-17, Sum P(3) = 5.9e-17
Identities = 23/96 (23%), Positives = 45/96 (46%)
Query: 827 NNSGRIIPHGGVDMD-YDSACKKVKEIEASLTKHLKE-QRKLLGDTSITYVTIGKDL--- 881
+N +I GGV + Y++ + + + + +L + + + T I + +G +
Sbjct: 417 DNPPMLIRDGGVIREGYNAELDEWRGLSEGASDYLVQLEAREKERTGIATLKVGYNRVHG 476
Query: 882 YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKK 917
Y +EV VP +Y+ R + K RY TP +K+
Sbjct: 477 YYIEVSRLQSNQVPLNYQRRQTLKNMERYITPELKE 512
Score = 42 (19.8 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 704 ERQDAVAGLRGVN-QPFALEFRKALSRLPDMERLLARLFA 742
ER A LR + FA R+ALS LP ++ L++L A
Sbjct: 353 ERIMARLALRTARPRDFA-RLRQALSLLPQLQLSLSQLSA 391
Score = 41 (19.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 20/82 (24%), Positives = 33/82 (40%)
Query: 852 IEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYW 911
+E ++ + L EQ K LGD + LR ++ +L+ S
Sbjct: 334 LETAVHESLHEQLKALGDIERIMARLALRTARPRDFARLRQALSLLPQLQLSLSQLSAPH 393
Query: 912 TPNIKKLLGELSQAESEKESAL 933
T + +LLGE Q + E A+
Sbjct: 394 TVKLGQLLGEFPQEQQLLEHAI 415
>UNIPROTKB|A6V1G8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
EMBL:CP000744 GenomeReviews:CP000744_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_001346903.1
ProteinModelPortal:A6V1G8 SMR:A6V1G8 STRING:A6V1G8 GeneID:5355863
KEGG:pap:PSPA7_1519 PATRIC:19824849
BioCyc:PAER381754:GHMY-1583-MONOMER Uniprot:A6V1G8
Length = 855
Score = 155 (59.6 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 48/166 (28%), Positives = 82/166 (49%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM-KGEQ-----PHCGFPER 385
+Q+++ K +H D+++F++MG FYELF DA AK LD+ +G+ P G P
Sbjct: 12 QQYFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSGGKAIPMAGIPFH 71
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ + KL + G V + EQ P KG V+R++ ++T GT+++ L
Sbjct: 72 SAEGYLAKLVKLGESVAICEQIGDPAT------SKGP----VERQVVRIITPGTVSDEAL 121
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQV 491
L D L+A A +R FG+ V+D+ + R + ++
Sbjct: 122 LDERRDN--LLA--------AILGDERLFGLAVLDITSGRFSVQEI 157
Score = 135 (52.6 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 56/195 (28%), Positives = 93/195 (47%)
Query: 647 MVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706
++LD + NLE+ N SG TL + ++ C TA RL+ WL RPL + ++ RQ
Sbjct: 264 VILDGASRRNLELDINL-SGGRENTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLEARQ 322
Query: 707 DAVAGLRGVNQPFALE-FRKALSRLPDMERLLARLFASSEANGRNSNKVVLYED-AAKKQ 764
+++A L + + E + L + D+ER+LAR+ N R + L + AA
Sbjct: 323 ESIACLL---ERYRFENLQPQLKEIGDLERILARI---GLRNARPRDLARLRDALAALPD 376
Query: 765 LQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIV---SILKHFKDA- 820
LQ ++ L L A +++G E E I P PA++ ++K DA
Sbjct: 377 LQNAMTELEAPHLQALA-TTIGTYPELAELLAKAIIDNP----PAVIRDGGVIKTGYDAE 431
Query: 821 FDWVEA--NNSGRII 833
D ++A N+G+ +
Sbjct: 432 LDELQALSENAGQFL 446
Score = 101 (40.6 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 32/125 (25%), Positives = 61/125 (48%)
Query: 827 NNSGRIIPHGGV-DMDYDSACKKVKEIEASLTKHLKE-QRKLLGDTSITYVTIGKDL--- 881
+N +I GGV YD+ +++ + + + L + + + T + + +G +
Sbjct: 412 DNPPAVIRDGGVIKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIHG 471
Query: 882 YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIK----KLLGELSQAESEKESALKSIL 937
Y +E+P P DY R + KG R+ TP +K K L S+A + +++ + +L
Sbjct: 472 YFIELPRVQAEQAPADYIRRQTLKGAERFITPELKAFEDKALSAQSRALAREKALYEELL 531
Query: 938 QRLIG 942
+RLIG
Sbjct: 532 ERLIG 536
Score = 39 (18.8 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 708 AVAGLRGVNQPFALEFRKALSRL 730
AVA L GV P R+ L RL
Sbjct: 772 AVAQLAGVPSPVIQRAREHLKRL 794
Score = 37 (18.1 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 524 ERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNK 569
E+A+ L+ L PL + A + + N+ R LN+
Sbjct: 523 EKALYEELLERLIGHLAPLQDSASALAELDVLANLAERALNLDLNR 568
>TIGR_CMR|VC_0535 [details] [associations]
symbol:VC_0535 "DNA mismatch repair protein MutS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD PIR:B82312 RefSeq:NP_230186.1 ProteinModelPortal:Q9KUI6
SMR:Q9KUI6 DNASU:2615204 GeneID:2615204 KEGG:vch:VC0535
PATRIC:20080174 Uniprot:Q9KUI6
Length = 862
Score = 153 (58.9 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 47/153 (30%), Positives = 77/153 (50%)
Query: 647 MVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706
++LDA NLE+ N +G + TL L+HC T G R+L+ W+ +P+ ++ + +R
Sbjct: 272 VILDAATRRNLELTHNL-AGGTDNTLAEVLDHCATPMGSRMLKRWIHQPMRDNATLNQRL 330
Query: 707 DAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSE-----ANGRNSNKVVLYEDAA 761
DA+ L+ E L ++ D+ER+LARL S A R++ + + +
Sbjct: 331 DAITELK--ETALYGELHPVLKQIGDIERILARLALRSARPRDLARLRHAMQQLPELHSV 388
Query: 762 KKQL-QEFISALHG-CELMDQACSSLG-AILEN 791
+L Q ++ L E MD+ C L AI EN
Sbjct: 389 MSELKQPHLTELRTHAEPMDELCDLLERAIKEN 421
Score = 137 (53.3 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 50/177 (28%), Positives = 81/177 (45%)
Query: 320 PPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK----- 374
P + L + + +Q+ K+++ D ++F++MG FYELF DA ++ LD+ K
Sbjct: 8 PSESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKRGASA 67
Query: 375 GEQ-PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICA 433
GE P G P + KL + G V + EQ P KG V+R++
Sbjct: 68 GEPIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPAT------SKGP----VERKVVR 117
Query: 434 VVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQ 490
+VT GT+T+ LLS D + + A+ N FG +D+ + R L +
Sbjct: 118 IVTPGTVTDEALLSERVD-NLIAAIYHHNGR---------FGYATMDITSGRFQLSE 164
Score = 44 (20.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 708 AVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKV 754
AVAGL GV +P + A ++L +E L +S A R ++V
Sbjct: 781 AVAGLAGVPKPV---IKNARAKLQQLE-----LLSSQPAETRKPSRV 819
>UNIPROTKB|Q8F496 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:189518 "Leptospira interrogans serovar Lai str. 56601"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300 OMA:HYFELTV
EMBL:AE010300 GenomeReviews:AE010300_GR KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:NP_712327.1 ProteinModelPortal:Q8F496
PaxDb:Q8F496 GeneID:1151489 KEGG:lil:LA_2146 PATRIC:22385139
BioCyc:LINT189518:GJBB-1740-MONOMER Uniprot:Q8F496
Length = 848
Score = 163 (62.4 bits), Expect = 5.6e-16, Sum P(3) = 5.6e-16
Identities = 42/129 (32%), Positives = 68/129 (52%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ--PHCGFPERNFSM 389
KQ+ K D ++FF+MG FYE+F DA + + LD+ K + P CG P +
Sbjct: 26 KQFLAIKKDFPDTILFFRMGDFYEMFLEDAKIASSILDIALTKRQNAVPMCGIPYHSKDN 85
Query: 390 NVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSAN 449
+ +L G ++ + EQ++ PE E GSK ++ R++ ++T GT+ E LLS
Sbjct: 86 YISRLLNAGKKIAICEQSK-PE-------EAGSK--LMTRDVVRIITPGTVIEENLLSGF 135
Query: 450 PDASYLMAL 458
+ +YL L
Sbjct: 136 QN-NYLAVL 143
Score = 118 (46.6 bits), Expect = 5.6e-16, Sum P(3) = 5.6e-16
Identities = 69/252 (27%), Positives = 113/252 (44%)
Query: 590 ILSELISTGDSGS-QVLSALGGTLFYLKKSFLDETL-LRFAKFELLPCSGFGDMAKKPYM 647
+L I T + S QVLS Y+++++ D L LR K ++ ++
Sbjct: 210 VLKNQIETSEKDSFQVLSKYLNE--YIRETYRDNKLVLREPKI----------LSSGKFL 257
Query: 648 VLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIR---E 704
+D + NLE+ EN + + + TLY+ N C TA GKRLL+ + P + ++ E
Sbjct: 258 EMDRETIRNLELVENEK--EKNNTLYSIFNFCNTAKGKRLLKQRILFPECDPVVLYSRWE 315
Query: 705 RQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQ 764
+QD + L+ V P+ AL D+ER+L R F + A R+ + L ++ +
Sbjct: 316 KQDIL--LKTVLAPYIT----ALKDFGDLERILTR-FRGNHAYPRDFRSL-LNSISSGIK 367
Query: 765 LQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVS----ILKHFKDA 820
L+E + + L+ L I + + R LH PG LP I+ + K F
Sbjct: 368 LKEELEKVSYPFLIP--IEELKKISDFIQER-LH----PGDDLPVILGNGIFLKKGFSQK 420
Query: 821 FDWV-EANNSGR 831
D EA G+
Sbjct: 421 LDQAREAGVKGK 432
Score = 54 (24.1 bits), Expect = 5.6e-16, Sum P(3) = 5.6e-16
Identities = 22/107 (20%), Positives = 46/107 (42%)
Query: 837 GVDMDYDSACKK-VKEIEASLTKHLKEQRKL-LGDTSITYVTIGKDLYLLEVPESLRGSV 894
G D A + VK + L KE+++ L I Y I Y +E+ +
Sbjct: 416 GFSQKLDQAREAGVKGKDWILDLETKEKKRTGLNTLKIRYNKIVG--YFIEISRAQAEQA 473
Query: 895 PRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLI 941
P+DY + + G R+ P ++++ + +A+ + ++ R++
Sbjct: 474 PKDYLKKQTLVGSERFTMPKLEEIERTILEADEIIQEIERTEFNRMV 520
>POMBASE|SPAC8F11.03 [details] [associations]
symbol:msh3 "MutS protein homolog 3" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0007534 "gene conversion at
mating-type locus" evidence=IMP] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0061500 "gene conversion at
mating-type locus, termination of copy-synthesis" evidence=IMP]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0000403 "Y-form DNA
binding" evidence=ISO] [GO:0000404 "loop DNA binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPAC8F11.03
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006281
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0032135 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0000406 GO:GO:0007534 OrthoDB:EOG42NN7M EMBL:X61306
PIR:S22569 ProteinModelPortal:P26359 STRING:P26359 PRIDE:P26359
NextBio:20804407 Uniprot:P26359
Length = 993
Score = 166 (63.5 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 54/167 (32%), Positives = 82/167 (49%)
Query: 624 LLRFAKFELLPCSGFGDMAKK-PYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTA 682
L+ F+ +L S F MVL ALE LE+F N G+L+ L+ T
Sbjct: 378 LMEFSLEDLFVASNFYQPFDSISSMVLSKQALEGLELFVNQTDHTPVGSLFWVLDRTYTR 437
Query: 683 FGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFA 742
FG+R+L+ WL +PL + I ER DAV L + RK L RLPD+E+ L+R++
Sbjct: 438 FGQRMLQRWLQKPLVDKENIIERLDAVEELAFNSNSQVQAIRKMLYRLPDLEKGLSRIYY 497
Query: 743 S----SEANGRNSNKVVLYEDAAKKQL-QEF--ISAL--HGCELMDQ 780
A+ + N ++ A ++L Q+ IS++ H + DQ
Sbjct: 498 QRGFYKAASAFSKNSYSCFKSALLRRLIQQLPSISSIIDHFLGMFDQ 544
Score = 158 (60.7 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 61/245 (24%), Positives = 117/245 (47%)
Query: 730 LPDMERLLARLFASSEANGRNSNKVVLYEDAAKK--QLQEFISALHGCELMDQACSSLGA 787
L D E ++ RL A E ++++V + L++ +S ++ +A S+
Sbjct: 451 LVDKENIIERLDAVEELAFNSNSQVQAIRKMLYRLPDLEKGLSRIYYQRGFYKAASAFSK 510
Query: 788 ILENT-ESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVD------- 839
+ +S L ++ + LP+I SI+ HF FD EA N+ ++ +D
Sbjct: 511 NSYSCFKSALLRRLI---QQLPSISSIIDHFLGMFDQKEAENNNKVDMFKDIDNFDLSEE 567
Query: 840 ---MDYDSACKKVKEIEASL----TK---HLKEQRKLLGDTSITYVTIGKDLYLLEVPES 889
+DY+ A ++++E++ S+ T+ HL+E R L ++ + G + +EV +
Sbjct: 568 PNDVDYELA-QEIRELKMSILMVRTEMDFHLQELRDYLEYPNLEFSIWGNVKFCIEVSKG 626
Query: 890 LRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHN 949
+ +P D+ SS + FR+ TP I+ LL ELS E + + I + + + EH+N
Sbjct: 627 CK-KIPPDWIKLSSTRSLFRFHTPKIQSLLIELSSHEENLTISSEKIYRSFLSRISEHYN 685
Query: 950 KWRQM 954
+ R +
Sbjct: 686 ELRNV 690
Score = 122 (48.0 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 42/208 (20%), Positives = 83/208 (39%)
Query: 331 QKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSM 389
++Q+ E K + + ++ ++G + F DA + ++ L + Y + + P
Sbjct: 107 EQQYLELKKNYQETILAIEVGYKFRFFGKDAKIASEVLGISCYFEHNFLNASVPSYRIDY 166
Query: 390 NVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSAN 449
++E+L G +V VV QTET + S++ + R + V+TKGT +
Sbjct: 167 HLERLINFGLKVAVVRQTETAAL----KSTSSSRNTLFDRRVARVLTKGTTLDDSFFRFE 222
Query: 450 P------DASYLMALTESNQSPASQSTDRC-FGICVVDVATSRIILGQVMXXXXXXXXXX 502
AS + N + + R G+ + +++ +
Sbjct: 223 QTQHGTLQASQFILCVADNVDKSKAKSGRVQVGLIAIQLSSGTTVYDHFQDDFLRSELQT 282
Query: 503 XXXXXRPVEIIKPANMLSPETERAILRH 530
+P E+I +N LS E+ A+L H
Sbjct: 283 RLSHFQPCELIY-SNKLSSESV-ALLNH 308
>UNIPROTKB|Q0J1W5 [details] [associations]
symbol:Os09g0407600 "Os09g0407600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR007696 GO:GO:0005524
GO:GO:0009411 GO:GO:0003684 EMBL:AP008215 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 KO:K08737 ProtClustDB:CLSN2685718
InterPro:IPR015536 PANTHER:PTHR11361:SF31 RefSeq:NP_001063136.2
UniGene:Os.48494 STRING:Q0J1W5 GeneID:4347016 KEGG:osa:4347016
Gramene:Q0J1W5 Uniprot:Q0J1W5
Length = 72
Score = 200 (75.5 bits), Expect = 7.7e-15, P = 7.7e-15
Identities = 35/56 (62%), Positives = 46/56 (82%)
Query: 905 KGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAG 960
+GF+RYWTP +K+L+ ELS+AE+EKE+ LK ILQ LI F EHH+KWRQ+V+ AG
Sbjct: 7 QGFYRYWTPEVKELISELSKAEAEKEAKLKCILQNLIQLFVEHHSKWRQLVSVVAG 62
>UNIPROTKB|P23909 [details] [associations]
symbol:mutS species:83333 "Escherichia coli K-12"
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0032300 "mismatch repair complex"
evidence=IGI] [GO:0032136 "adenine/cytosine mispair binding"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEP] [GO:0043531 "ADP binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0000018 "regulation of DNA recombination"
evidence=IMP] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003684
GO:GO:0043531 GO:GO:0008301 GO:GO:0006298 EMBL:U29579 GO:GO:0000018
GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
PDB:2OK2 PDBsum:2OK2 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 HOGENOM:HOG000221407 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD EMBL:M64730 EMBL:AF004287 EMBL:AF001987 EMBL:AF001988
EMBL:AF001989 EMBL:AF001990 EMBL:AF001991 EMBL:AF001992
EMBL:AF001993 EMBL:AF001994 EMBL:AF001995 EMBL:AF001996
EMBL:AF001997 EMBL:AF001998 EMBL:AF001999 EMBL:AF002000
EMBL:AF002001 EMBL:AF002002 EMBL:AF002003 EMBL:AF002004
EMBL:AF002005 EMBL:AF002006 EMBL:AF002007 EMBL:AF002008
EMBL:AF002009 EMBL:AF002010 PIR:I54964 RefSeq:NP_417213.1
RefSeq:YP_490942.1 PDB:1E3M PDB:1NG9 PDB:1OH5 PDB:1OH6 PDB:1OH7
PDB:1OH8 PDB:1W7A PDB:1WB9 PDB:1WBB PDB:1WBD PDB:2WTU PDB:3K0S
PDBsum:1E3M PDBsum:1NG9 PDBsum:1OH5 PDBsum:1OH6 PDBsum:1OH7
PDBsum:1OH8 PDBsum:1W7A PDBsum:1WB9 PDBsum:1WBB PDBsum:1WBD
PDBsum:2WTU PDBsum:3K0S ProteinModelPortal:P23909 SMR:P23909
DIP:DIP-10287N IntAct:P23909 MINT:MINT-1264156 SWISS-2DPAGE:P23909
PRIDE:P23909 EnsemblBacteria:EBESCT00000004425
EnsemblBacteria:EBESCT00000016508 GeneID:12932427 GeneID:947206
KEGG:ecj:Y75_p2671 KEGG:eco:b2733 PATRIC:32120868 EchoBASE:EB0620
EcoGene:EG10625 BioCyc:EcoCyc:EG10625-MONOMER
BioCyc:ECOL316407:JW2703-MONOMER BioCyc:MetaCyc:EG10625-MONOMER
EvolutionaryTrace:P23909 Genevestigator:P23909 GO:GO:0032136
Uniprot:P23909
Length = 853
Score = 139 (54.0 bits), Expect = 9.9e-15, Sum P(2) = 9.9e-15
Identities = 32/94 (34%), Positives = 54/94 (57%)
Query: 647 MVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706
+++DA NLE+ +N +G + TL + L+ VT G R+L+ WL P+ ++ ++ ERQ
Sbjct: 267 IIMDAATRRNLEITQNL-AGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQ 325
Query: 707 DAVAGLRGVNQPFALEFRKALSRLPDMERLLARL 740
+ L Q F + L ++ D+ER+LARL
Sbjct: 326 QTIGAL----QDFTAGLQPVLRQVGDLERILARL 355
Score = 139 (54.0 bits), Expect = 9.9e-15, Sum P(2) = 9.9e-15
Identities = 46/165 (27%), Positives = 78/165 (47%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK-----GEQ-PHCGFPER 385
+Q+ K++H + ++F++MG FYELF DA ++ LD+ K GE P G P
Sbjct: 15 QQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYH 74
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ KL +G V + EQ P KG V+R++ +VT GT+++ L
Sbjct: 75 AVENYLAKLVNQGESVAICEQIGDPAT------SKGP----VERKVVRIVTPGTISDEAL 124
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQ 490
L D + L A+ + ++ FG +D+++ R L +
Sbjct: 125 LQERQD-NLLAAIWQDSKG---------FGYATLDISSGRFRLSE 159
>ASPGD|ASPL0000012704 [details] [associations]
symbol:AN3749 species:162425 "Emericella nidulans"
[GO:0061500 "gene conversion at mating-type locus, termination of
copy-synthesis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 162 (62.1 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 69/326 (21%), Positives = 136/326 (41%)
Query: 638 FGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLY 697
F + + +M+L+ L +LE+++N S G+L+ L+ T FG+R+LR W+ RPL
Sbjct: 505 FQHFSSRSHMLLNGNTLTSLEIYQNQTDYSSKGSLFWTLDRTQTRFGQRMLRKWVGRPLL 564
Query: 698 NSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLY 757
+ + +R +AV L+ +FR + + ++ LL ++ E + +Y
Sbjct: 565 DRRQLEDRVNAVEELK--------DFRNVVM-VERIKGLLGKIKHDLE-----KGLIRIY 610
Query: 758 EDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHF 817
+ E ++ L +++ Q + + + + S I LP I+ + F
Sbjct: 611 YGKCSRP--ELLTILQTMQMIAQEFADIESPADTGFSSPA--ISQAIMSLPTILKDVVFF 666
Query: 818 KDAFDWVEANNSGRIIPHGGVDMDYDSACKK--VKEIEASLTKHLKEQRKLLGDTSITYV 875
+ + A N + + + + K + +E L +H + LG +TYV
Sbjct: 667 LNKINMHAARNDDKYEFFREEEETEEISEHKLGIGAVEHELEEHRPVAGEALGKKMVTYV 726
Query: 876 TIGKDLYLLEVPESLRG--SVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESAL 933
++ YL+EV + VP + S K R+ TP + K++ + Q +A
Sbjct: 727 SVAGIDYLVEVENNSPAIKRVPASWMKISGTKKVSRFHTPEVVKMIRQRDQHREALAAAC 786
Query: 934 KSILQRLIGQFCEHHNKWRQMVAATA 959
L + ++ R V + A
Sbjct: 787 DKAFLALQAEIATNYQALRDCVQSLA 812
Score = 142 (55.0 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 47/182 (25%), Positives = 86/182 (47%)
Query: 564 AESLNKADSNVANSQAEGDGLT--CLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLD 621
AES + S A D +L +++ D QV L + ++ + L
Sbjct: 440 AESHSHVSSFYAEKMKSADAADDEVASNLLQKVLGLPD---QVTICLSAMIKHMTEYGL- 495
Query: 622 ETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVT 681
E +L+ K+ F + + +M+L+ L +LE+++N S G+L+ L+ T
Sbjct: 496 EHVLQLTKY-------FQHFSSRSHMLLNGNTLTSLEIYQNQTDYSSKGSLFWTLDRTQT 548
Query: 682 AFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKAL-SRLP-DMERLLAR 739
FG+R+LR W+ RPL + + +R +AV L+ +E K L ++ D+E+ L R
Sbjct: 549 RFGQRMLRKWVGRPLLDRRQLEDRVNAVEELKDFRNVVMVERIKGLLGKIKHDLEKGLIR 608
Query: 740 LF 741
++
Sbjct: 609 IY 610
Score = 107 (42.7 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 31/97 (31%), Positives = 48/97 (49%)
Query: 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-----EQP--- 378
L+ +KQ E K KHMD ++ ++G + F DA + AKEL + + G E P
Sbjct: 195 LTPMEKQVIEIKKKHMDTILLIEVGYKFRFFGEDARIAAKELSIVCIPGKFRYDEHPSEA 254
Query: 379 H------CGFPERNFSMNVEKLARKGYRVLVVEQTET 409
H P + ++V++L G++V VV Q ET
Sbjct: 255 HLDRFASASIPVQRLHVHVKRLVAAGHKVGVVRQLET 291
Score = 84 (34.6 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 51/228 (22%), Positives = 87/228 (38%)
Query: 357 FEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELR 416
F D H LD ++ P + ++V++L G++V VV Q ET
Sbjct: 245 FRYDEHPSEAHLD-RFASAS-----IPVQRLHVHVKRLVAAGHKVGVVRQLETAAL---- 294
Query: 417 RKEKG-SKDKVVKREICAVVTKGTLT------EGELLSANPDAS--YLMALTESNQSPAS 467
K G +++ R++ V TK T EG A+ ++ Y++ +TE+N
Sbjct: 295 -KAAGDNRNAPFVRKLTNVYTKSTYIDDIESLEGSTAGASGASATGYILCITETNARGWG 353
Query: 468 QSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAI 527
GI V T I+ + P E++ LS TE+ +
Sbjct: 354 NDEKVHVGIVAVQPTTGDIVYDEFDDGFMRSEIETRLLHIAPCEMLIVGE-LSKATEK-L 411
Query: 528 LRHTRNPLVN---DLVPLSEFWDAETTVLEIKNIYNRITAESLNKADS 572
++H +N D V + A+T E + + AE + AD+
Sbjct: 412 VQHLSGSKMNVFGDKVRVERAPKAKTAAAESHSHVSSFYAEKMKSADA 459
Score = 37 (18.1 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 291 KFHFLGPDRRDAKRRR-----PGDVYYD 313
KF F G D R A + PG YD
Sbjct: 221 KFRFFGEDARIAAKELSIVCIPGKFRYD 248
Score = 37 (18.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 579 AEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLL 625
AEGD P + G G L+ + + +KK +D LL
Sbjct: 169 AEGDEDDETPQPVQPKGKAGKKGGGKLTPMEKQVIEIKKKHMDTILL 215
>UNIPROTKB|Q5B6T1 [details] [associations]
symbol:msh3 "DNA mismatch repair protein msh3"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
EMBL:BN001302 EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 162 (62.1 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 69/326 (21%), Positives = 136/326 (41%)
Query: 638 FGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLY 697
F + + +M+L+ L +LE+++N S G+L+ L+ T FG+R+LR W+ RPL
Sbjct: 505 FQHFSSRSHMLLNGNTLTSLEIYQNQTDYSSKGSLFWTLDRTQTRFGQRMLRKWVGRPLL 564
Query: 698 NSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLY 757
+ + +R +AV L+ +FR + + ++ LL ++ E + +Y
Sbjct: 565 DRRQLEDRVNAVEELK--------DFRNVVM-VERIKGLLGKIKHDLE-----KGLIRIY 610
Query: 758 EDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHF 817
+ E ++ L +++ Q + + + + S I LP I+ + F
Sbjct: 611 YGKCSRP--ELLTILQTMQMIAQEFADIESPADTGFSSPA--ISQAIMSLPTILKDVVFF 666
Query: 818 KDAFDWVEANNSGRIIPHGGVDMDYDSACKK--VKEIEASLTKHLKEQRKLLGDTSITYV 875
+ + A N + + + + K + +E L +H + LG +TYV
Sbjct: 667 LNKINMHAARNDDKYEFFREEEETEEISEHKLGIGAVEHELEEHRPVAGEALGKKMVTYV 726
Query: 876 TIGKDLYLLEVPESLRG--SVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESAL 933
++ YL+EV + VP + S K R+ TP + K++ + Q +A
Sbjct: 727 SVAGIDYLVEVENNSPAIKRVPASWMKISGTKKVSRFHTPEVVKMIRQRDQHREALAAAC 786
Query: 934 KSILQRLIGQFCEHHNKWRQMVAATA 959
L + ++ R V + A
Sbjct: 787 DKAFLALQAEIATNYQALRDCVQSLA 812
Score = 142 (55.0 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 47/182 (25%), Positives = 86/182 (47%)
Query: 564 AESLNKADSNVANSQAEGDGLT--CLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLD 621
AES + S A D +L +++ D QV L + ++ + L
Sbjct: 440 AESHSHVSSFYAEKMKSADAADDEVASNLLQKVLGLPD---QVTICLSAMIKHMTEYGL- 495
Query: 622 ETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVT 681
E +L+ K+ F + + +M+L+ L +LE+++N S G+L+ L+ T
Sbjct: 496 EHVLQLTKY-------FQHFSSRSHMLLNGNTLTSLEIYQNQTDYSSKGSLFWTLDRTQT 548
Query: 682 AFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKAL-SRLP-DMERLLAR 739
FG+R+LR W+ RPL + + +R +AV L+ +E K L ++ D+E+ L R
Sbjct: 549 RFGQRMLRKWVGRPLLDRRQLEDRVNAVEELKDFRNVVMVERIKGLLGKIKHDLEKGLIR 608
Query: 740 LF 741
++
Sbjct: 609 IY 610
Score = 107 (42.7 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 31/97 (31%), Positives = 48/97 (49%)
Query: 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-----EQP--- 378
L+ +KQ E K KHMD ++ ++G + F DA + AKEL + + G E P
Sbjct: 195 LTPMEKQVIEIKKKHMDTILLIEVGYKFRFFGEDARIAAKELSIVCIPGKFRYDEHPSEA 254
Query: 379 H------CGFPERNFSMNVEKLARKGYRVLVVEQTET 409
H P + ++V++L G++V VV Q ET
Sbjct: 255 HLDRFASASIPVQRLHVHVKRLVAAGHKVGVVRQLET 291
Score = 84 (34.6 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 51/228 (22%), Positives = 87/228 (38%)
Query: 357 FEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELR 416
F D H LD ++ P + ++V++L G++V VV Q ET
Sbjct: 245 FRYDEHPSEAHLD-RFASAS-----IPVQRLHVHVKRLVAAGHKVGVVRQLETAAL---- 294
Query: 417 RKEKG-SKDKVVKREICAVVTKGTLT------EGELLSANPDAS--YLMALTESNQSPAS 467
K G +++ R++ V TK T EG A+ ++ Y++ +TE+N
Sbjct: 295 -KAAGDNRNAPFVRKLTNVYTKSTYIDDIESLEGSTAGASGASATGYILCITETNARGWG 353
Query: 468 QSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAI 527
GI V T I+ + P E++ LS TE+ +
Sbjct: 354 NDEKVHVGIVAVQPTTGDIVYDEFDDGFMRSEIETRLLHIAPCEMLIVGE-LSKATEK-L 411
Query: 528 LRHTRNPLVN---DLVPLSEFWDAETTVLEIKNIYNRITAESLNKADS 572
++H +N D V + A+T E + + AE + AD+
Sbjct: 412 VQHLSGSKMNVFGDKVRVERAPKAKTAAAESHSHVSSFYAEKMKSADA 459
Score = 37 (18.1 bits), Expect = 2.9e-10, Sum P(3) = 2.9e-10
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 291 KFHFLGPDRRDAKRRR-----PGDVYYD 313
KF F G D R A + PG YD
Sbjct: 221 KFRFFGEDARIAAKELSIVCIPGKFRYD 248
Score = 37 (18.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 579 AEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLL 625
AEGD P + G G L+ + + +KK +D LL
Sbjct: 169 AEGDEDDETPQPVQPKGKAGKKGGGKLTPMEKQVIEIKKKHMDTILL 215
>UNIPROTKB|Q3KKQ0 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:315277 "Chlamydia trachomatis A/HAR-13" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:CP000051 GenomeReviews:CP000051_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_328620.1
ProteinModelPortal:Q3KKQ0 STRING:Q3KKQ0 GeneID:3687872
KEGG:cta:CTA_0862 PATRIC:32023672
BioCyc:CTRA315277:GI4C-873-MONOMER Uniprot:Q3KKQ0
Length = 820
Score = 143 (55.4 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 39/135 (28%), Positives = 69/135 (51%)
Query: 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ-PHCGFPER 385
L+ +QW + K + D ++ F++G+FYE F DA + A+ LD+ + + P G P
Sbjct: 5 LTPMMQQWHQCKEQAGDCLLLFRLGEFYEAFFDDALILAQNLDITLTQRQNVPMSGIPAT 64
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
V++L +G++V + EQ + E GSK +V R I ++T G L L
Sbjct: 65 CLDGYVDRLVSRGFKVAIAEQADNTE---------GSKG-LVPRTINRLITPGALLSSSL 114
Query: 446 LSANPDASYLMALTE 460
L + +Y++A+ +
Sbjct: 115 LPEKAN-NYVLAINQ 128
Score = 98 (39.6 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 52/209 (24%), Positives = 91/209 (43%)
Query: 538 DLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGL-TCLPGILSELIS 596
+L+ ++F+ V++ + RIT L++ S Q+ L TC +S L
Sbjct: 167 ELLSHAKFYQKNEAVIKQLQQHLRIT---LSEYVSWAFEYQSATKKLYTCFQ--VSSLDG 221
Query: 597 TGDSGS-QVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALE 655
G G ++A G L Y++ D+ LL + + G ++ ++++D +
Sbjct: 222 FGLQGLVPAINAAGALLSYIQ----DKLLLPISHLSIPKIYG-----QQKHLLIDKASQT 272
Query: 656 NLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGV 715
NLE+ G+L + T G RLLR L P Y+ I RQD+V +
Sbjct: 273 NLELLSPIHGEHRKGSLLQVMERTSTPMGGRLLRNTLINPFYDLKEITLRQDSVEFF--L 330
Query: 716 NQPFALEF-RKALSRLPDMERLLARLFAS 743
Q + ++ LS + D+ERL ++ S
Sbjct: 331 QQADLRKILKRQLSCVRDLERLATKISTS 359
Score = 69 (29.3 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 24/116 (20%), Positives = 53/116 (45%)
Query: 847 KKVKEIEASLTKHLKEQRKLLGDTSITYVTI--GKDL-YLLEVPESLRGSVPRDYELRSS 903
+ +KE S L+ Q ++ +T I + + + L Y +EV +L +P+++ R S
Sbjct: 439 RNIKENSKSWI--LEYQERIRNETGIKKLKVCYAQALGYYIEVASNLAPQLPKEFIRRQS 496
Query: 904 KKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATA 959
+ R+ T +++ E+ E + ++ + + L EH + ++ A A
Sbjct: 497 RLHAERFTTQELQQFQDEVFSVEDKLQTLETKLFKELCFYIVEHRDLILKLSTAVA 552
>DICTYBASE|DDB_G0275999 [details] [associations]
symbol:msh1 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISS;IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0275999
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0006298 GO:GO:0008094 GO:GO:0043504
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
GO:GO:0032139 OMA:ITQTVRD RefSeq:XP_643371.1 STRING:Q552L1
EnsemblProtists:DDB0232360 GeneID:8620254 KEGG:ddi:DDB_G0275999
InParanoid:Q552L1 ProtClustDB:CLSZ2729174 Uniprot:Q552L1
Length = 898
Score = 162 (62.1 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 37/135 (27%), Positives = 73/135 (54%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ--------PHCGFP 383
+Q+ FK K+ ++++FF++G FYE+F+ DA + + L + +Q P CG P
Sbjct: 2 EQYSGFKKKYPNEILFFRLGDFYEMFDEDAKIASNLLGITLTSRKQGKNRNREIPMCGVP 61
Query: 384 ERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEG 443
+ +++ KL + G V + +Q E + + R+ ++ R+I ++T GTL E
Sbjct: 62 SHSAEIHIAKLVKLGKSVAICDQVEDSNEAKEGRR-------IINRQIVRIITPGTLYED 114
Query: 444 ELLSANPDASYLMAL 458
L++N ++YL ++
Sbjct: 115 RYLTSN--SNYLCSI 127
Score = 96 (38.9 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 67/320 (20%), Positives = 135/320 (42%)
Query: 647 MVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706
M +D +++LE+ + + GD G+L ++ +T G RLL + + P I R
Sbjct: 318 MFIDYSTMQSLEITKTYQ-GDKKGSLLESIDKTITPQGGRLLFSRIQSPSLELKEINSRL 376
Query: 707 DAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQ 766
+ + N E R L+ D+ER + RL +++ R+ + + + +
Sbjct: 377 NQLEFFYN-NMELTNEVRSFLNAGSDIERCIQRL-KINKSGPRDLHTIGSTLQSIFHLKE 434
Query: 767 EFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEA 826
S L ++ +Q S+ +L + +Q H LTP +L H A +++
Sbjct: 435 SLQSKLLTMKINEQT-ESINQLL--LKIQQTH--LTP---------LLNHLSAAL--IDS 478
Query: 827 NNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDT-SITYVTIGKDL---Y 882
S + G + Y + K I + + E R+ + I + + K+ Y
Sbjct: 479 PPSISVNDGGFIKEGYSKELDRYKLISRNSDALINEFRETYRNKLKIPKLKVNKNSIIGY 538
Query: 883 LLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAES---EKESALKSILQR 939
+E+ S R +P ++ + R+ + ++ L E+++A S E E L +L
Sbjct: 539 YIEISSSDRDKIPLNFIHIQTLLSVMRFKSSDLIILEDEINRAASKVLEYEIQLYYVLVD 598
Query: 940 LIGQFCEHHNKWRQMVAATA 959
L+ C++ N+ +Q+ + A
Sbjct: 599 LV---CKYSNEIKQVSSVIA 615
Score = 44 (20.5 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 28/137 (20%), Positives = 49/137 (35%)
Query: 461 SNQSPASQSTDRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLS 520
+N S S F I +D++T + +P EI+ PA++
Sbjct: 162 NNISNTKFSASSQFSISWLDISTGDFFISS----STLENLSSELNRIQPKEILIPASLNY 217
Query: 521 PETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAE 580
+ IL+ + NDL F + T +N + N+ ++ ++
Sbjct: 218 NQQISKILKPYNVSMENDL---KSFNYKKKTFKIFNEAFNN---NNNNEINNEYFENEFS 271
Query: 581 GDGLTCLPGILSELIST 597
D L ILS +I T
Sbjct: 272 NDELNSAGSILSYIIKT 288
>SGD|S000001162 [details] [associations]
symbol:MSH1 "DNA-binding protein involved in repair of
mitochondrial DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0043570
"maintenance of DNA repeat elements" evidence=IRD] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0043504 "mitochondrial DNA
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IDA] [GO:0000002 "mitochondrial genome maintenance"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001162 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BK006934 GO:GO:0006298 EMBL:U00059 GO:GO:0008094
GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150 EMBL:M84169
PIR:S48962 RefSeq:NP_011988.1 ProteinModelPortal:P25846 SMR:P25846
DIP:DIP-6433N IntAct:P25846 MINT:MINT-683422 STRING:P25846
PaxDb:P25846 EnsemblFungi:YHR120W GeneID:856520 KEGG:sce:YHR120W
CYGD:YHR120w OMA:KERLLNP NextBio:982278 Genevestigator:P25846
GermOnline:YHR120W GO:GO:0032300 GO:GO:0032139 Uniprot:P25846
Length = 959
Score = 137 (53.3 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 47/159 (29%), Positives = 74/159 (46%)
Query: 341 HMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-----YMKGEQPHCGFPERNFSMNVEKLA 395
+ D V+ +MG FYEL+ A A EL++ Y G+ P GFP S +++ L
Sbjct: 93 YKDHVVLTQMGSFYELYFEQAIRYAPELNISLTNRAYSHGKVPFAGFPVHQLSRHLKMLV 152
Query: 396 RK-GYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASY 454
GY V + EQ + + + +K +R + +VT GT + E + +Y
Sbjct: 153 NNCGYSVTIAEQFKKKDVAD------NEANKFYRR-VTRIVTPGTFID-EAFENLRENTY 204
Query: 455 LMALTESNQSPASQSTDRCF--GICVVDVATSRIILGQV 491
L+ + E ++ SQ D GIC DV+T I + QV
Sbjct: 205 LLNI-EFPENCMSQVADTSLKVGICWCDVSTGEIFVQQV 242
Score = 111 (44.1 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 30/101 (29%), Positives = 48/101 (47%)
Query: 647 MVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706
M +D+ LE+ R + G+L + + VT G RLL WL+ P + I++RQ
Sbjct: 363 MQIDSRTSTALELHSTVRDNNKKGSLLSSIRRTVTPSGTRLLSQWLSGPSLDLKEIKKRQ 422
Query: 707 DAVAGLRGVNQPFALEFRKALSRLPDMERLLARL-FASSEA 746
VA + N+ R L ++ D+ R+L + F EA
Sbjct: 423 KIVAFFKD-NRDITETLRTMLKKVNDLSRILQKFSFGRGEA 462
Score = 46 (21.3 bits), Expect = 1.8e-11, Sum P(3) = 1.8e-11
Identities = 34/116 (29%), Positives = 49/116 (42%)
Query: 765 LQEFISALHGCELMDQACSSLGAILENTESRQLH--HILTPGKGLPAIVSILKHFKDAFD 822
L E G E + A ++L +LEN + R L H G+ L I+ K K +
Sbjct: 849 LDEIGRGTSGKEGISIAYATLKYLLENNQCRTLFATHF---GQELKQIIDN-KCSKGMSE 904
Query: 823 WVEANNSGRIIPHGGVDMDYD-----SACKK-----VKEIEASLTKHLKEQRKLLG 868
V+ SG I GG + Y+ C K V E+ + LKE R++LG
Sbjct: 905 KVKFYQSG-ITDLGGNNFCYNHKLKPGICTKSDAIRVAELAGFPMEALKEAREILG 959
>UNIPROTKB|F1M551 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007695 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF01624 Pfam:PF05188 RGD:1563954
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 Gene3D:3.40.1170.10
SUPFAM:SSF55271 IPI:IPI00947919 Ensembl:ENSRNOT00000064966
ArrayExpress:F1M551 Uniprot:F1M551
Length = 370
Score = 171 (65.3 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 57/214 (26%), Positives = 92/214 (42%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSMNV 391
Q+ + K H D V+ + G Y F DA + A+EL++ ++ P ++V
Sbjct: 160 QYLDVKQLHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHV 219
Query: 392 EKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELL----- 446
+L KGY+V VV+QTET + +K V R++ A+ TK TL ++L
Sbjct: 220 RRLVAKGYKVGVVKQTETAALKAIG----DNKSSVFSRKLTALYTKSTLIGEDILDRTLD 275
Query: 447 -SANPD-------ASYLMALTESNQSPASQSTDRC-FGICVVDVATSRIILGQVMXXXXX 497
S N D +YL+ + E ++ + FGI V AT ++
Sbjct: 276 DSVNIDEAVTDTSTNYLLCIYEEKENIKDKKKGNISFGIVGVQPATGEVVFDCFQDSASR 335
Query: 498 XXXXXXXXXXRPVEIIKPANMLSPETERAILRHT 531
+PVE++ P+ + P TE I R T
Sbjct: 336 LELETRTASLQPVELLLPSQLSEP-TEMLIRRAT 368
>UNIPROTKB|Q8A334 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_812033.1
ProteinModelPortal:Q8A334 GeneID:1075929 KEGG:bth:BT_3121
PATRIC:21061245 BioCyc:BTHE226186:GJXV-3185-MONOMER Uniprot:Q8A334
Length = 862
Score = 133 (51.9 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 48/165 (29%), Positives = 76/165 (46%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK-----GEQPH-CGFPER 385
KQ+ + K+KH D V+ F+ G FYE + DA V ++ L + K G+ GFP
Sbjct: 3 KQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFPHH 62
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ KL R G RV + +Q E P K +K K+VKR I +VT G +
Sbjct: 63 ALDTYLPKLIRAGKRVAICDQLEDP---------KLTK-KLVKRGITELVTPGVSINDNV 112
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQ 490
L+ + ++L A+ S C G+ +D++T + +
Sbjct: 113 LNYKEN-NFLAAVHFGKAS--------C-GVAFLDISTGEFLTAE 147
Score = 87 (35.7 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 646 YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRER 705
Y+ LD + +LE+ + G SS L ++ ++ G RLL+ W+ PL + I +R
Sbjct: 255 YVRLDKFTVRSLELIGSMNDGGSS--LLNVIDRTISPMGARLLKRWMVFPLKDEKPINDR 312
Query: 706 QDAVAGLRGVNQP-FALEFRKALSRLPDMERLLARL 740
+ V QP F + L + D+ER+++++
Sbjct: 313 LNVVEYF--FRQPDFKELIEEQLHLIGDLERIISKV 346
Score = 51 (23.0 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 47/202 (23%), Positives = 87/202 (43%)
Query: 729 RLPDMERLLA-RLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGA 787
R PD + L+ +L + R +KV + + ++ +Q + AL E + QAC
Sbjct: 321 RQPDFKELIEEQLHLIGDLE-RIISKVAVGRVSPREVVQLKV-ALQAIEPIKQAC----- 373
Query: 788 ILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMD-YDSAC 846
LE ++ L+ I G+ L +SI + N+ +I GGV D +
Sbjct: 374 -LE-ADNASLNRI---GEQLNLCISIRDRIAKEIN----NDPPLLINKGGVIKDGVNEEL 424
Query: 847 KKVKEIEASLTKHLKE-QRKLLGDTSITYVTIGKDL---YLLEVPESLRGSVPRDYELRS 902
+++ I S +L + Q++ T I + + + Y +EV + VP+++ +
Sbjct: 425 DELRRISYSGKDYLLQIQQRESEQTGIPSLKVAYNNVFGYYIEVRNIHKDKVPQEWIRKQ 484
Query: 903 SKKGFFRYWTPNIK----KLLG 920
+ RY T +K K+LG
Sbjct: 485 TLVNAERYITQELKVYEEKILG 506
Score = 40 (19.1 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 528 LRHTRNPLVNDLVPLSEFWDAETTVLE 554
+R R+P++ +P+ E + A +L+
Sbjct: 571 IRQGRHPVIEKQLPIGEKYIANDVMLD 597
>UNIPROTKB|Q75D87 [details] [associations]
symbol:AGOS_ABR137W "ABR137Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] [GO:0043504
"mitochondrial DNA repair" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005739 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE016815 GenomeReviews:AE016815_GR GO:GO:0008094
GO:GO:0043504 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000157750
OrthoDB:EOG42591V SUPFAM:SSF53150 GO:GO:0032300 GO:GO:0032139
RefSeq:NP_983084.2 STRING:Q75D87 EnsemblFungi:AAS50908
GeneID:4619194 KEGG:ago:AGOS_ABR137W Uniprot:Q75D87
Length = 955
Score = 122 (48.0 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 42/163 (25%), Positives = 74/163 (45%)
Query: 336 EFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDL-----QYMKGEQPHCGFPERNFSMN 390
+ K+ D V+ +MG FYEL+ A A +L++ +Y G+ P GFP S +
Sbjct: 82 DMMDKYPDYVLLTQMGSFYELYYEHAEKYAPKLNITLTRREYSHGKVPFAGFPLEQLSRH 141
Query: 391 VEKLARK-GYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSAN 449
++ L ++ GY V VVEQ + + R + R + VVT GT + E
Sbjct: 142 LKVLVKEYGYSVAVVEQFRKDDIADNERYK-------FNRRVTRVVTPGTFID-EAFENL 193
Query: 450 PDASYLMALTESNQSPASQSTDRC-FGICVVDVATSRIILGQV 491
+ +L+++ ++ S G+ D++T + + QV
Sbjct: 194 QENQFLLSVEFPDRCMEKLSDPSIKVGLSWCDISTGELFVQQV 236
Score = 91 (37.1 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 30/102 (29%), Positives = 46/102 (45%)
Query: 647 MVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706
M +D+ LE+ R G+L + + VT G RLL WL+ P + I++RQ
Sbjct: 357 MQIDSRTSAALELHNTFRDNLKRGSLLSAIRRTVTPSGTRLLTQWLSAPSMHLDEIKQRQ 416
Query: 707 DAVAGLRGVNQPFALEFRKA-LSRLPDMERLLARL-FASSEA 746
+ V + PF + A L DM R+L + F +A
Sbjct: 417 NLVRLF--MQNPFVTDNLIAQLKATADMTRILQKFSFKRGDA 456
>UNIPROTKB|O13396 [details] [associations]
symbol:msh-2 "DNA mismatch repair protein msh-2"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:AF030634 EMBL:AABX02000010
RefSeq:XP_959643.1 UniGene:Ncr.25288 ProteinModelPortal:O13396
STRING:O13396 EnsemblFungi:EFNCRT00000003090 GeneID:3875790
KEGG:ncr:NCU02230 OrthoDB:EOG4S7NZ5 GO:GO:0000735 Uniprot:O13396
Length = 937
Score = 159 (61.0 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 49/142 (34%), Positives = 70/142 (49%)
Query: 640 DMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNS 699
D+A+ +M LDA AL+ L + +R G + +LY LNHC T G RLL WL +PL N+
Sbjct: 285 DLAQ--FMKLDAAALKALNLMPGARDGAKNMSLYGLLNHCKTPVGSRLLSQWLKQPLMNA 342
Query: 700 GLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYED 759
I +RQ V + + L +PD+ RL R F +A + V Y+
Sbjct: 343 EEIEKRQQLVEAFANDTELRQSMQEEHLRSIPDLYRLSKR-FQRGKAT--LEDVVRAYQV 399
Query: 760 AAKKQLQEFISALHGCELMDQA 781
+ L FI L G +MD+A
Sbjct: 400 VIR--LPGFIGTLEG--VMDEA 417
>UNIPROTKB|H9L225 [details] [associations]
symbol:H9L225 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007695 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF01624 Pfam:PF05188 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GeneTree:ENSGT00550000074949 EMBL:AADN02030667
Ensembl:ENSGALT00000035739 Uniprot:H9L225
Length = 187
Score = 135 (52.6 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 41/165 (24%), Positives = 79/165 (47%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ-PHCGFPERNFSMNV 391
Q+ E K ++ D ++ + G Y F DA + +KEL++ + P ++V
Sbjct: 7 QFIEMKKRYKDAILCVECGYKYRFFGEDAEIASKELNICCHQDHNFMTASIPTHRLFVHV 66
Query: 392 EKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSAN-- 449
+L KG++V V++Q ET L+ + K S + R++ A+ TK TL ++L N
Sbjct: 67 RRLVAKGHKVGVIKQMETAA-LKAAGENKSS---LFSRKLTALYTKSTLIGEDILFKNVE 122
Query: 450 ------PDASYLMALTESNQSPASQST-DRCFGICVVDVATSRII 487
PD +YL+ + E+ ++ ++ D G+ + T ++
Sbjct: 123 EVTTDVPD-NYLLCICENGENVKNRKKGDIVIGVMAIQPTTGEVV 166
>ASPGD|ASPL0000073909 [details] [associations]
symbol:AN10621 species:162425 "Emericella nidulans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000404 "loop DNA
binding" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0000406 "double-strand/single-strand DNA
junction binding" evidence=IEA] [GO:0032138 "single base insertion
or deletion binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006200 GO:GO:0016887 GO:GO:0030466 GO:GO:0006298
EMBL:BN001303 GO:GO:0000228 GO:GO:0000403 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
GO:GO:0032138 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0000735 EnsemblFungi:CADANIAT00005387 Uniprot:C8V8L9
Length = 945
Score = 162 (62.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 53/174 (30%), Positives = 84/174 (48%)
Query: 607 ALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSG 666
A+GG ++ + F +++L D+A+ YM LDA AL L + R G
Sbjct: 262 AMGGAAALIRYLGVMSDATNFGQYQLYQ----HDLAQ--YMKLDAAALRALNLMPGPRDG 315
Query: 667 DSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKA 726
S +L+ LNHC T G RLL WL +PL + I +RQ V + + +
Sbjct: 316 SKSMSLFGLLNHCKTPVGSRLLAQWLKQPLMDLAEIEKRQRLVEAFVVSTELRQMMQEEH 375
Query: 727 LSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQ 780
L +PD+ RL A+ F +AN + +V Y+ A + L F+++L +MD+
Sbjct: 376 LRSIPDLYRL-AKRFQRKQANLEDVVRV--YQVAIR--LPGFVNSLEN--VMDE 422
Score = 37 (18.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 298 DRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQ 331
DR D + + RT+Y LRNL +
Sbjct: 37 DRGDWYSAHGKEAEFIARTVYKTTSVLRNLGRSE 70
>RGD|620786 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=IEA;ISO] [GO:0000400
"four-way junction DNA binding" evidence=IEA;ISO;IBA] [GO:0000403
"Y-form DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002204 "somatic recombination of
immunoglobulin genes involved in immune response" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO;ISS] [GO:0003684 "damaged
DNA binding" evidence=ISO;IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA;ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006119 "oxidative phosphorylation" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=ISO;ISS;IBA] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO;IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0007050 "cell cycle arrest" evidence=IEA;ISO] [GO:0007281 "germ
cell development" evidence=IEA;ISO] [GO:0007283 "spermatogenesis"
evidence=IEP] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO;IBA] [GO:0010224 "response to UV-B"
evidence=IEA;ISO;IBA] [GO:0014070 "response to organic cyclic
compound" evidence=IEP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IEA;ISO;IBA] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=IEA;ISO] [GO:0019237
"centromeric DNA binding" evidence=IEA;ISO] [GO:0019724 "B cell
mediated immunity" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0030183 "B cell differentiation"
evidence=IEA;ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IEA;ISO;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA;ISO;IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032142 "single guanine
insertion binding" evidence=IEA;ISO] [GO:0032143 "single thymine
insertion binding" evidence=IEA;ISO] [GO:0032181 "dinucleotide
repeat insertion binding" evidence=IEA;ISO] [GO:0032301 "MutSalpha
complex" evidence=IEA;ISO;IBA] [GO:0032302 "MutSbeta complex"
evidence=IEA;ISO;IBA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA;ISO] [GO:0032405 "MutLalpha complex binding"
evidence=IEA;ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IBA] [GO:0042803
"protein homodimerization activity" evidence=IEA;ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO]
[GO:0043200 "response to amino acid stimulus" evidence=IEP]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043531 "ADP binding" evidence=IEA;ISO]
[GO:0043570 "maintenance of DNA repeat elements"
evidence=IEA;ISO;IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IEA;ISO;IBA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA;ISO] [GO:0051096
"positive regulation of helicase activity" evidence=IEA;ISO]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
RGD:620786 GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 CTD:4436
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:X93591
IPI:IPI00211849 PIR:JC6184 RefSeq:NP_112320.1 UniGene:Rn.3174
ProteinModelPortal:P54275 SMR:P54275 STRING:P54275
PhosphoSite:P54275 PRIDE:P54275 GeneID:81709 KEGG:rno:81709
UCSC:RGD:620786 InParanoid:P54275 NextBio:615336
ArrayExpress:P54275 Genevestigator:P54275
GermOnline:ENSRNOG00000015796 Uniprot:P54275
Length = 933
Score = 149 (57.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 68/201 (33%), Positives = 98/201 (48%)
Query: 591 LSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKF-ELLPC-SGFG--DMAK--- 643
L+ L+ G G Q+ SA+ L ++ +L KF ELL S FG ++A
Sbjct: 241 LNRLLK-GRKGEQMNSAV---LPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELATFDF 296
Query: 644 KPYMVLDAPALENLEVFENSRSGDSSGT--LYAQLNHCVTAFGKRLLRTWLARPLYNSGL 701
YM LD A+ L +F+ S D++G+ L A LN C TA G+RL+ W+ +PL +
Sbjct: 297 SQYMKLDMAAVRALNLFQGSVE-DTTGSQSLAAFLNKCKTAQGQRLVSQWIKQPLMDKNR 355
Query: 702 IRERQDAV-AGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDA 760
I ER + V A + AL+ L R PD+ RL A+ F AN ++ + LY+
Sbjct: 356 IEERLNLVEAFVEDSELRRALQ-EDLLRRFPDLNRL-AKKFQRQAANLQDCYR--LYQGV 411
Query: 761 AKKQLQEFISALHGCELMDQA 781
KQL I AL + QA
Sbjct: 412 --KQLPNVIQALEKYQGRHQA 430
>UNIPROTKB|F1M0A4 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007695 InterPro:IPR016151
Pfam:PF01624 RGD:1563954 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.40.1170.10 SUPFAM:SSF55271 IPI:IPI00195438
Ensembl:ENSRNOT00000018312 ArrayExpress:F1M0A4 Uniprot:F1M0A4
Length = 186
Score = 130 (50.8 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 36/117 (30%), Positives = 56/117 (47%)
Query: 338 KSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSMNVEKLAR 396
K H D V+ + G Y F DA + A+EL++ ++ P ++V +L
Sbjct: 2 KQLHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVRRLVA 61
Query: 397 KGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDAS 453
KGY+V VV+QTET + +K V R++ A+ TK TL ++L D S
Sbjct: 62 KGYKVGVVKQTETAALKAIG----DNKSSVFSRKLTALYTKSTLIGEDILDRTLDDS 114
>CGD|CAL0001526 [details] [associations]
symbol:MSH2 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0032302 "MutSbeta complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032138 "single base insertion or deletion
binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 CGD:CAL0001526 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AACQ01000086 EMBL:AACQ01000085
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08735 RefSeq:XP_715402.1
RefSeq:XP_715472.1 ProteinModelPortal:Q5A102 STRING:Q5A102
GeneID:3642853 GeneID:3642939 KEGG:cal:CaO19.10605
KEGG:cal:CaO19.3093 Uniprot:Q5A102
Length = 873
Score = 147 (56.8 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 83/308 (26%), Positives = 139/308 (45%)
Query: 646 YMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRER 705
+M LD+ ++ L + N + T +L C T G RLL WL +PL + LI ER
Sbjct: 274 FMKLDSSTMKALNILPNGTQ--KAITSIFELFKCKTLGGSRLLSQWLKQPLIDLSLIEER 331
Query: 706 QDAVAGLRGVNQPFALEFRKALSRLPDMERLLARL---FASSEANGRNSNKVV-LYEDAA 761
Q+ V + + +E ++ LS++PD+ RLL ++ S A + N+VV LY+ +
Sbjct: 332 QELVKAMID-DTSLRVEIQEFLSKVPDINRLLKKIGLGVKRSGAENKKLNEVVNLYQLVS 390
Query: 762 K-KQLQEFISALHGCELM---DQACSSLGAILENT----ESRQLHHILTPGKGLPAIVSI 813
L E ++ + + + +QA S ++E T S + + P P++ I
Sbjct: 391 LLPNLTEILTIDYYAKPLKKDEQALSKFCELVETTIDLDTSFDKDYKIKPDFD-PSLSEI 449
Query: 814 LKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSIT 873
+ + AF +A N + G D++ D+A K+K +E T H R D+ +
Sbjct: 450 SNNMESAF---KAIND--LYLEAGDDLNLDTASNKLK-LEQHQT-HGWCMRVTRNDSRVL 502
Query: 874 YVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESE---KE 930
GK Y EL++ K G F + T +K+L E ++A E K+
Sbjct: 503 R---GKSQYK---------------ELQTVKSGVF-FTTIEMKRLSQEYTKAYDEYNVKQ 543
Query: 931 S-ALKSIL 937
S +K IL
Sbjct: 544 SEVIKEIL 551
>WB|WBGene00003418 [details] [associations]
symbol:msh-2 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0032301
"MutSalpha complex" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032302 "MutSbeta complex" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IMP]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 KO:K08735 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 GeneTree:ENSGT00550000074867
OMA:HINERLD EMBL:FO080998 PIR:C87740 RefSeq:NP_491202.1
ProteinModelPortal:Q9TXR4 SMR:Q9TXR4 IntAct:Q9TXR4 MINT:MINT-227660
STRING:Q9TXR4 PaxDb:Q9TXR4 EnsemblMetazoa:H26D21.2.1
EnsemblMetazoa:H26D21.2.2 EnsemblMetazoa:H26D21.2.3 GeneID:171938
KEGG:cel:CELE_H26D21.2 UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2
InParanoid:Q9TXR4 NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 146 (56.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 40/98 (40%), Positives = 56/98 (57%)
Query: 647 MVLDAPALENLEVFE---NSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIR 703
M++D+ A+E LE+F+ N ++ TLY LN C T G++LLR WL+RPL I
Sbjct: 271 MLIDSCAVEALELFQLNYNYLEKSNNLTLYNVLNKCKTLPGEKLLRDWLSRPLCQIDHIN 330
Query: 704 ERQDAVAGLRGVNQPFALEFRKA-LSRLPDMERLLARL 740
ER D V L NQ + R + L+R+PD +L RL
Sbjct: 331 ERLDIVEALFE-NQTIRQKLRDSILARMPDCSQLARRL 367
>UNIPROTKB|Q9TXR4 [details] [associations]
symbol:msh-2 "Protein MSH-2" species:6239 "Caenorhabditis
elegans" [GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IBA] [GO:0010224 "response to UV-B" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006302 "double-strand break
repair" evidence=IBA] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0042771 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GeneTree:ENSGT00550000074867 OMA:HINERLD EMBL:FO080998 PIR:C87740
RefSeq:NP_491202.1 ProteinModelPortal:Q9TXR4 SMR:Q9TXR4
IntAct:Q9TXR4 MINT:MINT-227660 STRING:Q9TXR4 PaxDb:Q9TXR4
EnsemblMetazoa:H26D21.2.1 EnsemblMetazoa:H26D21.2.2
EnsemblMetazoa:H26D21.2.3 GeneID:171938 KEGG:cel:CELE_H26D21.2
UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2 InParanoid:Q9TXR4
NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 146 (56.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 40/98 (40%), Positives = 56/98 (57%)
Query: 647 MVLDAPALENLEVFE---NSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIR 703
M++D+ A+E LE+F+ N ++ TLY LN C T G++LLR WL+RPL I
Sbjct: 271 MLIDSCAVEALELFQLNYNYLEKSNNLTLYNVLNKCKTLPGEKLLRDWLSRPLCQIDHIN 330
Query: 704 ERQDAVAGLRGVNQPFALEFRKA-LSRLPDMERLLARL 740
ER D V L NQ + R + L+R+PD +L RL
Sbjct: 331 ERLDIVEALFE-NQTIRQKLRDSILARMPDCSQLARRL 367
>UNIPROTKB|Q5B374 [details] [associations]
symbol:AN5006.2 "Putative uncharacterized protein"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007720 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624 Pfam:PF05024
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0016021 GO:GO:0005524
GO:GO:0003684 GO:GO:0030466 GO:GO:0006506 EMBL:AACD01000084
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0017176
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
OrthoDB:EOG4S7NZ5 GO:GO:0000735 RefSeq:XP_662610.1
ProteinModelPortal:Q5B374 STRING:Q5B374 GeneID:2872806
KEGG:ani:AN5006.2 Uniprot:Q5B374
Length = 1644
Score = 162 (62.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 53/174 (30%), Positives = 84/174 (48%)
Query: 607 ALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSG 666
A+GG ++ + F +++L D+A+ YM LDA AL L + R G
Sbjct: 262 AMGGAAALIRYLGVMSDATNFGQYQLYQ----HDLAQ--YMKLDAAALRALNLMPGPRDG 315
Query: 667 DSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKA 726
S +L+ LNHC T G RLL WL +PL + I +RQ V + + +
Sbjct: 316 SKSMSLFGLLNHCKTPVGSRLLAQWLKQPLMDLAEIEKRQRLVEAFVVSTELRQMMQEEH 375
Query: 727 LSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQ 780
L +PD+ RL A+ F +AN + +V Y+ A + L F+++L +MD+
Sbjct: 376 LRSIPDLYRL-AKRFQRKQANLEDVVRV--YQVAIR--LPGFVNSLEN--VMDE 422
Score = 37 (18.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 298 DRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQ 331
DR D + + RT+Y LRNL +
Sbjct: 37 DRGDWYSAHGKEAEFIARTVYKTTSVLRNLGRSE 70
>UNIPROTKB|H9L226 [details] [associations]
symbol:H9L226 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007695 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF01624 Pfam:PF05188 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GeneTree:ENSGT00550000074949 EMBL:AADN02030667
Ensembl:ENSGALT00000035740 Uniprot:H9L226
Length = 404
Score = 138 (53.6 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 52/213 (24%), Positives = 96/213 (45%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ-PHCGFPERNFSMNV 391
Q+ E K ++ D ++ + G Y F DA + +KEL++ + P ++V
Sbjct: 171 QFIEMKKRYKDAILCVECGYKYRFFGEDAEIASKELNICCHQDHNFMTASIPTHRLFVHV 230
Query: 392 EKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE----LLS 447
+L KG++V V++Q ET L+ + K S + R++ A+ TK TL GE LL
Sbjct: 231 RRLVAKGHKVGVIKQMETAA-LKAAGENKSS---LFSRKLTALYTKSTLI-GEDVNPLLK 285
Query: 448 AN------------PDASYLMALTESNQSPASQST-DRCFGICVVDVATSRIILGQVMXX 494
+ PD +YL+ + E+ ++ ++ D G+ + T ++
Sbjct: 286 LDDSVDVEEVTTDVPD-NYLLCICENGENVKNRKKGDIVIGVMAIQPTTGEVVFDSFGDC 344
Query: 495 XXXXXXXXXXXXXRPVEIIKPANMLSPETERAI 527
+PVE+I P++ LS ++E+ I
Sbjct: 345 ASRLELESRLLRLQPVELILPSS-LSDQSEKLI 376
>UNIPROTKB|F1NV33 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00821163 Ensembl:ENSGALT00000014573 ArrayExpress:F1NV33
Uniprot:F1NV33
Length = 861
Score = 129 (50.5 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 49/170 (28%), Positives = 89/170 (52%)
Query: 605 LSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENS- 663
+S+L + +L+ D++ F ++EL + F D+++ YMVLD A++ L +F++S
Sbjct: 195 VSSLSAVIKFLEL-LSDDS--NFGQYEL---TTF-DLSQ--YMVLDNAAVQALNLFQSSV 245
Query: 664 RSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEF 723
+ +++ +L LN C T G+RL+ W+ +PL + I ER + V V+
Sbjct: 246 ENANNTQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFV-VDTELRQGL 304
Query: 724 RK-ALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISAL 772
++ L R PD+ RL A+ F A ++ + +Y+ A QL + AL
Sbjct: 305 QEDLLRRFPDLNRL-AKKFQRQAATLQDCYR--MYQ--AINQLPNVVQAL 349
Score = 62 (26.9 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 39/193 (20%), Positives = 76/193 (39%)
Query: 763 KQLQEFISALHGCELMDQACSSLGAILENTESRQ-LHHILTPGKGLPAIVSILKHFKDAF 821
K+ Q + L C M QA + L +++ E + H +L + + I F
Sbjct: 320 KKFQRQAATLQDCYRMYQAINQLPNVVQALEKHEGAHQMLLLAVFITPLNDIHSDFSKFL 379
Query: 822 DWVEAN-NSGRIIPH-----GGVDMDYDSACKKVKEIEASLTKHLKEQRKLLG---DTSI 872
+ +E + ++ H D + +K+ E+E S+ LK K LG SI
Sbjct: 380 EMIETTLDMDKVENHEFLVKASFDPNLTELREKMNELEESMQTLLKSAAKELGLEAGKSI 439
Query: 873 TYVT---IGKDLYLLEVPES-LRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESE 928
+ G + E LR ++ Y++ ++K ++ + + E + E
Sbjct: 440 KLESNSQFGHHFRITCKEEKVLRNNMK--YKITDTQKNGVKFTNSKLSAINEEYIKNREE 497
Query: 929 KESALKSILQRLI 941
E A +I++ +I
Sbjct: 498 YEEAQDAIVKEII 510
>UNIPROTKB|F1NFH4 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 OMA:WAISEHI GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00601005 Ensembl:ENSGALT00000039639 ArrayExpress:F1NFH4
Uniprot:F1NFH4
Length = 866
Score = 129 (50.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 49/170 (28%), Positives = 89/170 (52%)
Query: 605 LSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENS- 663
+S+L + +L+ D++ F ++EL + F D+++ YMVLD A++ L +F++S
Sbjct: 200 VSSLSAVIKFLEL-LSDDS--NFGQYEL---TTF-DLSQ--YMVLDNAAVQALNLFQSSV 250
Query: 664 RSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEF 723
+ +++ +L LN C T G+RL+ W+ +PL + I ER + V V+
Sbjct: 251 ENANNTQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFV-VDTELRQGL 309
Query: 724 RK-ALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISAL 772
++ L R PD+ RL A+ F A ++ + +Y+ A QL + AL
Sbjct: 310 QEDLLRRFPDLNRL-AKKFQRQAATLQDCYR--MYQ--AINQLPNVVQAL 354
Score = 62 (26.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 39/193 (20%), Positives = 76/193 (39%)
Query: 763 KQLQEFISALHGCELMDQACSSLGAILENTESRQ-LHHILTPGKGLPAIVSILKHFKDAF 821
K+ Q + L C M QA + L +++ E + H +L + + I F
Sbjct: 325 KKFQRQAATLQDCYRMYQAINQLPNVVQALEKHEGAHQMLLLAVFITPLNDIHSDFSKFL 384
Query: 822 DWVEAN-NSGRIIPH-----GGVDMDYDSACKKVKEIEASLTKHLKEQRKLLG---DTSI 872
+ +E + ++ H D + +K+ E+E S+ LK K LG SI
Sbjct: 385 EMIETTLDMDKVENHEFLVKASFDPNLTELREKMNELEESMQTLLKSAAKELGLEAGKSI 444
Query: 873 TYVT---IGKDLYLLEVPES-LRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESE 928
+ G + E LR ++ Y++ ++K ++ + + E + E
Sbjct: 445 KLESNSQFGHHFRITCKEEKVLRNNMK--YKITDTQKNGVKFTNSKLSAINEEYIKNREE 502
Query: 929 KESALKSILQRLI 941
E A +I++ +I
Sbjct: 503 YEEAQDAIVKEII 515
>MGI|MGI:101816 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IGI] [GO:0002204 "somatic recombination of immunoglobulin
genes involved in immune response" evidence=IGI] [GO:0003677 "DNA
binding" evidence=ISO;IMP] [GO:0003684 "damaged DNA binding"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IC;IDA] [GO:0006119 "oxidative
phosphorylation" evidence=IMP] [GO:0006200 "ATP catabolic process"
evidence=ISO;IMP] [GO:0006281 "DNA repair" evidence=ISO;IMP]
[GO:0006298 "mismatch repair" evidence=IGI;ISO;IDA;IMP] [GO:0006301
"postreplication repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006915 "apoptotic process"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0010165 "response to X-ray" evidence=IMP] [GO:0010224 "response
to UV-B" evidence=IMP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IGI;IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IGI;IMP]
[GO:0016887 "ATPase activity" evidence=IMP] [GO:0019237
"centromeric DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=IMP] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0030183 "B cell differentiation" evidence=IMP] [GO:0030983
"mismatched DNA binding" evidence=IMP] [GO:0031573 "intra-S DNA
damage checkpoint" evidence=IGI] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO;IDA] [GO:0032138 "single base
insertion or deletion binding" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=ISO;IDA] [GO:0032302 "MutSbeta complex"
evidence=ISO;IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043570 "maintenance of DNA
repeat elements" evidence=ISO;IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IMP] [GO:0045910 "negative regulation
of DNA recombination" evidence=ISO;IMP] [GO:0051096 "positive
regulation of helicase activity" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 MGI:MGI:101816
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 EMBL:X81143 EMBL:U21011 EMBL:BC047117
IPI:IPI00118158 PIR:S53608 RefSeq:NP_032654.1 UniGene:Mm.4619
ProteinModelPortal:P43247 SMR:P43247 IntAct:P43247 STRING:P43247
PhosphoSite:P43247 PaxDb:P43247 PRIDE:P43247
Ensembl:ENSMUST00000024967 GeneID:17685 KEGG:mmu:17685
InParanoid:P43247 NextBio:292252 Bgee:P43247 CleanEx:MM_MSH2
Genevestigator:P43247 GermOnline:ENSMUSG00000024151 Uniprot:P43247
Length = 935
Score = 146 (56.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 67/201 (33%), Positives = 96/201 (47%)
Query: 591 LSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKF-ELLPC-SGFG--DMAK--- 643
L+ L+ G G Q+ SA L ++ +L KF ELL S FG ++A
Sbjct: 241 LNRLLK-GKKGEQINSA---ALPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELATFDF 296
Query: 644 KPYMVLDAPALENLEVFENSRSGDSSGT--LYAQLNHCVTAFGKRLLRTWLARPLYNSGL 701
YM LD A+ L +F+ S D++G+ L A LN C TA G+RL+ W+ +PL +
Sbjct: 297 SQYMKLDMAAVRALNLFQGSVE-DTTGSQSLAALLNKCKTAQGQRLVNQWIKQPLMDRNR 355
Query: 702 IRERQDAV-AGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDA 760
I ER + V A + +L+ L R PD+ RL A+ F AN ++ + LY+
Sbjct: 356 IEERLNLVEAFVEDSELRQSLQ-EDLLRRFPDLNRL-AKKFQRQAANLQDCYR--LYQGI 411
Query: 761 AKKQLQEFISALHGCELMDQA 781
QL I AL E QA
Sbjct: 412 --NQLPSVIQALEKYEGRHQA 430
Score = 41 (19.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 25/112 (22%), Positives = 50/112 (44%)
Query: 345 VIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVV 404
V F G FY DA + A+E+ +G + G P + ++ L++ + V
Sbjct: 34 VRLFDRGDFYTAHGEDALLAAREVFKT--QGVIKYMG-PAGSKTLQSVVLSKMNFESFVK 90
Query: 405 EQTETPE-QLELRRKEKGSK-DKVVKREICAVVTKGTLTEGE-LLSANPDAS 453
+ + ++E+ + + G+K K + + + G L++ E +L N D S
Sbjct: 91 DLLLVRQYRVEVYKNKAGNKASKENEWYLAFKASPGNLSQFEDILFGNNDMS 142
Score = 40 (19.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 350 MGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARK-GYRVLVVEQTE 408
MG + + HVG +D K C FPE + N+E L + G + V+ E
Sbjct: 148 MGIKMAVVDGQRHVGVGYVDSTQRK--LGLCEFPENDQFSNLEALLIQIGPKECVLPGGE 205
Query: 409 TPEQL-ELRR 417
T + +LR+
Sbjct: 206 TTGDMGKLRQ 215
>UNIPROTKB|E1C1F8 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074949 EMBL:AADN02047884 EMBL:AADN02047885
EMBL:AADN02047886 EMBL:AADN02047887 EMBL:AADN02047888
EMBL:AADN02047889 IPI:IPI00586936 Ensembl:ENSGALT00000025135
OMA:LLLDCQR Uniprot:E1C1F8
Length = 598
Score = 134 (52.2 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 34/121 (28%), Positives = 61/121 (50%)
Query: 654 LENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAG-L 712
++NLE+ +N + G+L L+H T+FG+R L+ W+ +PL I R DAV+ L
Sbjct: 1 MKNLEILQNQTDLKTKGSLLWVLDHTKTSFGRRRLKKWVIQPLMKCSEINARLDAVSEIL 60
Query: 713 RGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISAL 772
+ F + + L +LPD+ER L +F + + + +V ++Q + +
Sbjct: 61 LSESSVFG-QIQNLLCKLPDLERGLCSVF-HKKCSTQEFFLIVSTLSRLDSEIQALVPVI 118
Query: 773 H 773
H
Sbjct: 119 H 119
Score = 126 (49.4 bits), Expect = 0.00027, P = 0.00027
Identities = 51/192 (26%), Positives = 86/192 (44%)
Query: 762 KKQLQEFISALHGCELMDQACSSLGAILEN-TESRQLHHILTPGKGLPAIVSILKHFKDA 820
K QEF + +D +L ++ + +S L + L +P ++S +KH+
Sbjct: 91 KCSTQEFFLIVSTLSRLDSEIQALVPVIHSHVKSPLLQNALLE---IPELLSPVKHYLKI 147
Query: 821 FDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTK---HLKEQRKLLGDTSITYVTI 877
+ EA +G D+ KK +EI L+K HL E RK + + S YVT+
Sbjct: 148 LN-EEAAKTGDKTQLFKDLTDFPVIRKKKEEILDVLSKIQLHLLEIRKQIKNPSAEYVTV 206
Query: 878 GKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSIL 937
+L+EV S SVP ++ + SS K R+ +P I + L+Q + +
Sbjct: 207 SGQEFLVEVKNSHISSVPSNWVMVSSTKAVSRFHSPFITENYRHLNQLREQLVLDCGAEW 266
Query: 938 QRLIGQFCEHHN 949
R + F EH++
Sbjct: 267 LRFLDHFSEHYH 278
>DICTYBASE|DDB_G0284747 [details] [associations]
symbol:msh5 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0003684 "damaged DNA
binding" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0284747
GO:GO:0005524 GenomeReviews:CM000153_GR EMBL:AAFI02000071
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 SUPFAM:SSF53150 KO:K08741 RefSeq:XP_638383.1
EnsemblProtists:DDB0231220 GeneID:8624752 KEGG:ddi:DDB_G0284747
InParanoid:Q54P75 OMA:FAAELDC ProtClustDB:CLSZ2728934
Uniprot:Q54P75
Length = 880
Score = 135 (52.6 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 69/282 (24%), Positives = 113/282 (40%)
Query: 471 DRCFGICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETERAILRH 530
D G+ D S I L Q P II P+ M P+ + I
Sbjct: 61 DLKIGVAYYDRLESNIYLCQCWEDENFSCLNSIKQLINPKVIIIPSRM--PQ--KFIDNI 116
Query: 531 TRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGI 590
RN ++D +E ++ T ++ T ES N+ S + T
Sbjct: 117 LRN--LDDSNENNEKQTSKNTQYHYSR-FSDFTFESSKNRLLNLKLSMCNTNNTTIKYTF 173
Query: 591 LSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLD 650
L + + + +++ A+GG L YL K L L F + L + + Y++LD
Sbjct: 174 LQNVFNFDNI--EMIRAVGGLLSYLSKYIL---LDDFDSLDNLIINEICPITLNQYLLLD 228
Query: 651 APALENLEVFENSRS------GDSS-G-TLYAQLNHCVTAFGKRLLRTWLARPLYNSGLI 702
L +L++F N G+S G +L+ + T GK+LL+TW RP N +I
Sbjct: 229 NNTLFSLQIFSNQNHPSCYSFGNSKEGLSLFGLFDKTKTTMGKKLLKTWFMRPSRNRFVI 288
Query: 703 RERQDAVAGLRGV-NQPFALEFRKALSRLPDMERLLARLFAS 743
ERQ+ + N E L + D++ +L+R+ +S
Sbjct: 289 EERQNLIQFFSSQENSSLKFELLDNLKNIKDLKIILSRISSS 330
>UNIPROTKB|E9PHA6 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 EMBL:AC079775
SUPFAM:SSF48334 GO:GO:0032301 GO:GO:0032302 EMBL:AC138655
HGNC:HGNC:7325 ChiTaRS:MSH2 IPI:IPI00893933
ProteinModelPortal:E9PHA6 SMR:E9PHA6 Ensembl:ENST00000406134
UCSC:uc002rvz.3 ArrayExpress:E9PHA6 Bgee:E9PHA6 Uniprot:E9PHA6
Length = 921
Score = 135 (52.6 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 57/175 (32%), Positives = 89/175 (50%)
Query: 602 SQV-LSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVF 660
+QV +S+L + +L+ D++ F +FEL + F D ++ YM LD A+ L +F
Sbjct: 263 NQVAVSSLSAVIKFLEL-LSDDS--NFGQFEL---TTF-DFSQ--YMKLDIAAVRALNLF 313
Query: 661 ENSRSGDSSGT--LYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAV-AGLRGVNQ 717
+ S D++G+ L A LN C T G+RL+ W+ +PL + I ER + V A +
Sbjct: 314 QGSVE-DTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAEL 372
Query: 718 PFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISAL 772
L+ L R PD+ RL A+ F AN ++ + LY+ QL I AL
Sbjct: 373 RQTLQ-EDLLRRFPDLNRL-AKKFQRQAANLQDCYR--LYQGI--NQLPNVIQAL 421
>UNIPROTKB|P43246 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0019237 "centromeric DNA binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=ISS;IBA] [GO:0010224
"response to UV-B" evidence=ISS;IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0042771
"intrinsic apoptotic signaling pathway in response to DNA damage by
p53 class mediator" evidence=IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0019901 "protein kinase binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA;IMP] [GO:0032405
"MutLalpha complex binding" evidence=IDA] [GO:0032301 "MutSalpha
complex" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0032302 "MutSbeta complex" evidence=IDA]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032143 "single thymine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA] [GO:0000400
"four-way junction DNA binding" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=ISS] [GO:0008584 "male gonad
development" evidence=ISS] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISS] [GO:0030183 "B cell
differentiation" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=ISS;IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0042803 GO:GO:0042771 GO:GO:0042493 GO:GO:0003684
GO:GO:0001701 GO:GO:0043524 GO:GO:0007050 GO:GO:0007283
GO:GO:0006119 GO:GO:0008584 GO:GO:0019237 GO:GO:0014070
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 Orphanet:144
GO:GO:0006301 GO:GO:0031573 MIM:608089 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 EMBL:AC079775 eggNOG:COG0249 SUPFAM:SSF48334
MIM:158320 Orphanet:587 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0051096 EMBL:U03911 EMBL:U04045 EMBL:U41221
EMBL:U41206 EMBL:U41207 EMBL:U41208 EMBL:U41210 EMBL:U41211
EMBL:U41212 EMBL:U41213 EMBL:U41214 EMBL:U41215 EMBL:U41216
EMBL:U41217 EMBL:U41218 EMBL:U41219 EMBL:U41220 EMBL:L47583
EMBL:L47582 EMBL:L47581 EMBL:AY601851 EMBL:AK304496 EMBL:BX649122
EMBL:AC138655 EMBL:BC021566 EMBL:AF066081 IPI:IPI00017303
IPI:IPI01014700 PIR:I64819 RefSeq:NP_000242.1 UniGene:Hs.597656
PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F PDB:3THW PDB:3THX
PDB:3THY PDB:3THZ PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E
PDBsum:2O8F PDBsum:3THW PDBsum:3THX PDBsum:3THY PDBsum:3THZ
ProteinModelPortal:P43246 SMR:P43246 DIP:DIP-35054N IntAct:P43246
MINT:MINT-84789 STRING:P43246 PhosphoSite:P43246 DMDM:1171032
PaxDb:P43246 PeptideAtlas:P43246 PRIDE:P43246 DNASU:4436
Ensembl:ENST00000233146 Ensembl:ENST00000543555 GeneID:4436
KEGG:hsa:4436 UCSC:uc002rvy.1 GeneCards:GC02P047630 HGNC:HGNC:7325
HPA:CAB009572 MIM:120435 MIM:609309 neXtProt:NX_P43246
PharmGKB:PA31133 InParanoid:P43246 PhylomeDB:P43246 ChiTaRS:MSH2
EvolutionaryTrace:P43246 GenomeRNAi:4436 NextBio:17289
ArrayExpress:P43246 Bgee:P43246 CleanEx:HS_MSH2
Genevestigator:P43246 GermOnline:ENSG00000095002 Uniprot:P43246
Length = 934
Score = 135 (52.6 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 57/175 (32%), Positives = 89/175 (50%)
Query: 602 SQV-LSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVF 660
+QV +S+L + +L+ D++ F +FEL + F D ++ YM LD A+ L +F
Sbjct: 263 NQVAVSSLSAVIKFLEL-LSDDS--NFGQFEL---TTF-DFSQ--YMKLDIAAVRALNLF 313
Query: 661 ENSRSGDSSGT--LYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAV-AGLRGVNQ 717
+ S D++G+ L A LN C T G+RL+ W+ +PL + I ER + V A +
Sbjct: 314 QGSVE-DTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAEL 372
Query: 718 PFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISAL 772
L+ L R PD+ RL A+ F AN ++ + LY+ QL I AL
Sbjct: 373 RQTLQ-EDLLRRFPDLNRL-AKKFQRQAANLQDCYR--LYQGI--NQLPNVIQAL 421
>UNIPROTKB|Q3MHE4 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9913
"Bos taurus" [GO:0045190 "isotype switching" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0032301 "MutSalpha complex" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] [GO:0010165 "response to X-ray"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0006302 "double-strand break repair" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0043531 "ADP binding"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0032405 "MutLalpha complex binding"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032181 "dinucleotide repeat insertion binding"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0030183 "B cell differentiation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0006119
"oxidative phosphorylation" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0000287
GO:GO:0003684 GO:GO:0001701 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0006119 GO:GO:0008584 GO:GO:0019237
GO:GO:0003697 GO:GO:0007281 GO:GO:0030183 GO:GO:0006302
GO:GO:0045190 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:BC105268 IPI:IPI00904469
RefSeq:NP_001029756.1 UniGene:Bt.635 ProteinModelPortal:Q3MHE4
SMR:Q3MHE4 STRING:Q3MHE4 PRIDE:Q3MHE4 Ensembl:ENSBTAT00000003556
GeneID:533115 KEGG:bta:533115 CTD:4436 GeneTree:ENSGT00550000074867
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 NextBio:20875918 GO:GO:0032181
GO:GO:0032357 GO:GO:0032142 GO:GO:0032143 GO:GO:0051096
Uniprot:Q3MHE4
Length = 934
Score = 143 (55.4 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 67/201 (33%), Positives = 92/201 (45%)
Query: 591 LSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKF-ELLPC-SGFGDMAK----- 643
L+ L+ G G QV SA+ L ++ +L KF ELL S FG
Sbjct: 241 LNRLLK-GKKGEQVNSAV---LPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDF 296
Query: 644 KPYMVLDAPALENLEVFENSRSGDSSGT--LYAQLNHCVTAFGKRLLRTWLARPLYNSGL 701
YM LD A+ L +F+ S D+SG+ L A LN C T G+RL+ W+ +PL +
Sbjct: 297 SQYMKLDIAAVRALNLFQGSVE-DTSGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNR 355
Query: 702 IRERQDAV-AGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDA 760
I ER + V A + L+ L R PD+ RL A+ F AN ++ + LY+
Sbjct: 356 IEERLNLVEAFVEDAELRQNLQ-EDLLRRFPDLNRL-AKKFQRQAANLQDCYR--LYQGI 411
Query: 761 AKKQLQEFISALHGCELMDQA 781
QL I AL E QA
Sbjct: 412 --NQLPNVIQALEKYEGKHQA 430
Score = 40 (19.1 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 32/144 (22%), Positives = 58/144 (40%)
Query: 345 VIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVV 404
V F G FY DA + A+E+ +G + G P ++ L++ + V
Sbjct: 34 VRLFDRGDFYTAHREDALLAAREVFKT--QGVVKYMG-PAGAKTLESVVLSKMNFESFVK 90
Query: 405 EQTETPE-QLELRRKEKGSK-DKVVKREICAVVTKGTLTEGE-LLSANPDASYLMALTES 461
+ + ++E+ + G+K K + + G L++ E +L N D S + +
Sbjct: 91 DLLLVRQYRVEVYKNRAGNKASKENDWYLAFKASPGNLSQFEDILFGNNDMSASIGVVGV 150
Query: 462 NQSPASQSTDRCFGICVVDVATSR 485
S R G+ VD +T R
Sbjct: 151 KMSTVDGQ--RQVGVGYVD-STQR 171
>UNIPROTKB|F1PM37 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GO:GO:0032301 KO:K08735 OMA:WAISEHI GO:GO:0032302 CTD:4436
GeneTree:ENSGT00550000074867 EMBL:AAEX03007498 EMBL:AAEX03007499
EMBL:AAEX03007500 RefSeq:XP_538482.2 Ensembl:ENSCAFT00000004191
GeneID:494002 KEGG:cfa:494002 Uniprot:F1PM37
Length = 934
Score = 138 (53.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 64/196 (32%), Positives = 90/196 (45%)
Query: 591 LSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKF-ELLPC-SGFGDMAK----- 643
L+ L+ G G QV SA+ L ++ L KF ELL S FG
Sbjct: 241 LNRLLK-GKKGEQVNSAV---LPEMENQVAASALSAVIKFLELLSDDSNFGQYELTTFDF 296
Query: 644 KPYMVLDAPALENLEVFENSRSGDSSGT--LYAQLNHCVTAFGKRLLRTWLARPLYNSGL 701
YM LD A+ L +F+ S D++G+ L A LN C T G+RL+ W+ +PL +
Sbjct: 297 SQYMKLDIAAVRALNLFQGSVE-DTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNR 355
Query: 702 IRERQDAV-AGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDA 760
I ER + V A + +L+ L R PD+ RL A+ F AN ++ + LY+
Sbjct: 356 IEERLNLVEAFVEDAELRQSLQ-EDLLRRFPDLNRL-AKKFQRQAANLQDCYR--LYQGI 411
Query: 761 AKKQLQEFISALHGCE 776
QL I AL E
Sbjct: 412 --NQLPNVIRALEKYE 425
Score = 41 (19.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 26/112 (23%), Positives = 47/112 (41%)
Query: 345 VIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVV 404
V F G FY DA + A+E+ +G + G P ++ L++ + V
Sbjct: 34 VRLFDRGDFYTAHHEDALLAAREVFKT--QGVIKYLG-PAGTKTLESVVLSKMNFESFVK 90
Query: 405 EQTETPE-QLELRRKEKGSK-DKVVKREICAVVTKGTLTEGE-LLSANPDAS 453
+ + ++E+ + GSK K + + G L++ E +L N D S
Sbjct: 91 DLLLIRQYRVEVYKNRAGSKASKENDWYLAFKASPGNLSQFEDILFGNNDMS 142
>UNIPROTKB|Q6L4V0 [details] [associations]
symbol:P0010D04.9 "Putative uncharacterized protein
P0010D04.9" species:39947 "Oryza sativa Japonica Group" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:AP008211 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AC130605 RefSeq:NP_001055948.1 UniGene:Os.53982
GeneID:4339215 KEGG:osa:4339215 ProtClustDB:CLSN2695708
Uniprot:Q6L4V0
Length = 809
Score = 128 (50.1 bits), Expect = 0.00025, P = 0.00025
Identities = 38/126 (30%), Positives = 59/126 (46%)
Query: 594 LISTGDSGSQV-LSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAP 652
L S D GS V + A GG L L L +TL + + ++ ++ LDA
Sbjct: 133 LNSMMDLGSDVQVRAAGGLLAILDNERLLDTLDQMEGGASIAIDSVAQISLDKFLKLDAT 192
Query: 653 ALENLEVFENSRSGDSSG--------TLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRE 704
A E L++F+ + G +++ LN CVT GK LLRTW RP+ + +I
Sbjct: 193 AHEALQIFQVDKHPSYMGIGRAKEGFSVFGMLNKCVTPMGKHLLRTWFLRPIIDIDVINN 252
Query: 705 RQDAVA 710
R + ++
Sbjct: 253 RLNTIS 258
>CGD|CAL0005874 [details] [associations]
symbol:orf19.496 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0005874 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 HOGENOM:HOG000157750 SUPFAM:SSF53150
RefSeq:XP_717359.1 RefSeq:XP_717448.1 STRING:Q5A6Q9 GeneID:3640907
GeneID:3640972 KEGG:cal:CaO19.496 KEGG:cal:CaO19.8126
Uniprot:Q5A6Q9
Length = 923
Score = 90 (36.7 bits), Expect = 0.00028, Sum P(2) = 0.00027
Identities = 36/118 (30%), Positives = 60/118 (50%)
Query: 345 VIFFKMGKFYEL-FEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLV 403
V ++G FYEL FE G K L L+ K + + P F +L RK +L+
Sbjct: 67 VSLIQVGSFYELYFEQAEEYGPK-LGLKIAKKKTSNHVVPFAGFPTT--QL-RKFTEMLI 122
Query: 404 VEQTETPEQLELRRKEKGSK--DKVVKREICAVVTKGTLTEGELLSANPDASYLMALT 459
EQ ++ + ++GSK +V R+I ++T GTL + L+ N + +YL+A++
Sbjct: 123 HEQQVNVAIID--QCDQGSKTNQNLVHRKISRIITPGTLIDESFLNFNEN-NYLVAIS 177
Score = 89 (36.4 bits), Expect = 0.00028, Sum P(2) = 0.00027
Identities = 29/94 (30%), Positives = 47/94 (50%)
Query: 649 LDAPALENLEVFENSRSGDSS--GTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQ 706
+D+ E LE+ E + +G +S G+L + + T+ G RLL W+ P ++ I +RQ
Sbjct: 324 MDSRTREALELTERTIAGRTSSVGSLVSVIKRTCTSSGTRLLTEWIKSPSLDTKDIEKRQ 383
Query: 707 DAVAGLRGVNQPFALEFRKALSRLPDMERLLARL 740
V NQ + R+ L +L D R L +L
Sbjct: 384 SFVKMFLK-NQHLKIVTRQHLQQLGDFIRNLQKL 416
>TAIR|locus:2095097 [details] [associations]
symbol:MSH2 "AT3G18524" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=ISS;IDA] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP catabolic
process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS;IMP] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0032302 "MutSbeta complex" evidence=IEA;IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IMP] [GO:0006290 "pyrimidine dimer repair"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016570 "histone modification" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0031507 "heterochromatin assembly"
evidence=RCA] [GO:0045787 "positive regulation of cell cycle"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005886 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003684 EMBL:AB026658 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 EMBL:AP001303
GO:GO:0008094 GO:GO:0006290 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 EMBL:AF026549 EMBL:AF109243
EMBL:AF002706 EMBL:AF003005 EMBL:U87911 IPI:IPI00526204
RefSeq:NP_566804.3 UniGene:At.10475 ProteinModelPortal:O24617
SMR:O24617 STRING:O24617 PaxDb:O24617 PRIDE:O24617
EnsemblPlants:AT3G18524.1 GeneID:821383 KEGG:ath:AT3G18524
TAIR:At3g18524 HOGENOM:HOG000196498 InParanoid:O24617 KO:K08735
OMA:WAISEHI PhylomeDB:O24617 ProtClustDB:CLSN2680872
Genevestigator:O24617 GermOnline:AT3G18524 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 Uniprot:O24617
Length = 937
Score = 128 (50.1 bits), Expect = 0.00030, P = 0.00030
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 646 YMVLDAPALENLEVFENSRSGDSSGTLYAQLNH-CVTAFGKRLLRTWLARPLYNSGLIRE 704
+M LD+ A+ L V E+ + + +L+ +N C GKRLL WL +PL + I+
Sbjct: 293 FMRLDSAAMRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEIKT 352
Query: 705 RQDAVAGL---RGVNQPFALEFRKALSRLPDMERLLARL 740
R D V G+ Q + R+ L R+ D+ERLL L
Sbjct: 353 RLDIVQCFVEEAGLRQ----DLRQHLKRISDVERLLRSL 387
>TAIR|locus:2092404 [details] [associations]
symbol:MSH5 "AT3G20475" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=RCA] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0007059 "chromosome
segregation" evidence=RCA] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0009691
"cytokinin biosynthetic process" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0032204 "regulation
of telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GO:GO:0003684 GO:GO:0030983 GO:GO:0008094 GO:GO:0051026
EMBL:AB024036 GO:GO:0045143 GO:GO:0043073 GO:GO:0000795
SUPFAM:SSF48334 GO:GO:0032300 GO:GO:0010777 EMBL:EF471448
EMBL:AK221687 EMBL:AK230222 EMBL:BT012280 IPI:IPI00532145
RefSeq:NP_188683.3 UniGene:At.50208 ProteinModelPortal:F4JEP5
SMR:F4JEP5 EnsemblPlants:AT3G20475.1 GeneID:821593
KEGG:ath:AT3G20475 TAIR:At3g20475 KO:K08741 OMA:NDLVFFY
Uniprot:F4JEP5
Length = 807
Score = 126 (49.4 bits), Expect = 0.00040, P = 0.00040
Identities = 44/168 (26%), Positives = 76/168 (45%)
Query: 582 DGLTCLPGILSELISTGDSGSQV-LSALGGTLFYLKKSFLDETLLRFAKFEL-LPCSGFG 639
DGL I L S D GS+V + GG L L+ + ETL + +
Sbjct: 117 DGLNIKERICY-LSSMMDVGSEVQVRVSGGLLAILESERIVETLEQNESGSASIAIDSVM 175
Query: 640 DMAKKPYMVLDAPALENLEVFENSRSGDSSG--------TLYAQLNHCVTAFGKRLLRTW 691
++ ++ LDA A E L++F+ + G +++ +N C T G+RLLR+W
Sbjct: 176 EVPLNKFLKLDAAAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCATPMGRRLLRSW 235
Query: 692 LARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLAR 739
RP+ + ++ R +A++ + A R+ L + D+ LL +
Sbjct: 236 FMRPILDLEVLDRRLNAISFFISSVELMA-SLRETLKSVKDISHLLKK 282
>WB|WBGene00001872 [details] [associations]
symbol:him-14 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0045143 "homologous
chromosome segregation" evidence=IMP] [GO:0051026 "chiasma
assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
EMBL:FO081697 GO:GO:0000239 GO:GO:0008094 GO:GO:0051026
GO:GO:0000712 GO:GO:0045143 GO:GO:0000795 EMBL:AF178755 PIR:E88197
RefSeq:NP_495451.1 UniGene:Cel.22695 ProteinModelPortal:Q23405
SMR:Q23405 STRING:Q23405 PaxDb:Q23405 EnsemblMetazoa:ZK1127.11
GeneID:174157 KEGG:cel:CELE_ZK1127.11 UCSC:ZK1127.11 CTD:174157
WormBase:ZK1127.11 eggNOG:COG0249 GeneTree:ENSGT00550000074897
HOGENOM:HOG000015880 InParanoid:Q23405 KO:K08740 OMA:GFFIQMT
NextBio:882779 GermOnline:ZK1127.11 Gene3D:3.30.420.110
SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 126 (49.4 bits), Expect = 0.00043, P = 0.00043
Identities = 63/249 (25%), Positives = 110/249 (44%)
Query: 566 SLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGS-QVLSALGGTLFYLKKSFLDETL 624
SL S NS+ G L +++ +ST G + ALG LK ++ ET
Sbjct: 133 SLQSISSKYFNSER---GERQLQSLMNAEVSTVSEGCLRRTLALGALAVLLK--YIHETR 187
Query: 625 LRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDS-------SGTLYAQLN 677
F + + L +M ++D + E+LE+ + + + TL + LN
Sbjct: 188 CVFFRVKSLRIK---EMGVNDTCMIDFVSWESLEIVDADDASKARKFQMKQKRTLMSVLN 244
Query: 678 HCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLL 737
H VT G RLLR+ + +P + LI+ RQ+A+ L G Q + R+ LSR +++R++
Sbjct: 245 HTVTTNGYRLLRSSVLQPSTDVYLIQSRQEAIEELIGKPQ-LKDKLRRTLSRAHELDRVI 303
Query: 738 ARLFASSEA-NGRNS----NKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENT 792
A +S + R S N+++ K +Q + LH ++ L++
Sbjct: 304 AMCIQTSTSWTVRESEAKINQIIKLMHTLKV-IQGIRTLLHSAKMKSNILIEKTEFLKDP 362
Query: 793 ESRQLHHIL 801
Q+ +IL
Sbjct: 363 RFDQIMNIL 371
>UNIPROTKB|Q23405 [details] [associations]
symbol:him-14 "MutS protein homolog him-14" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IMP] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IMP]
[GO:0000239 "pachytene" evidence=IMP] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0051729 GO:GO:0006298
GO:GO:0030983 EMBL:FO081697 GO:GO:0000239 GO:GO:0008094
GO:GO:0051026 GO:GO:0000712 GO:GO:0045143 GO:GO:0000795
EMBL:AF178755 PIR:E88197 RefSeq:NP_495451.1 UniGene:Cel.22695
ProteinModelPortal:Q23405 SMR:Q23405 STRING:Q23405 PaxDb:Q23405
EnsemblMetazoa:ZK1127.11 GeneID:174157 KEGG:cel:CELE_ZK1127.11
UCSC:ZK1127.11 CTD:174157 WormBase:ZK1127.11 eggNOG:COG0249
GeneTree:ENSGT00550000074897 HOGENOM:HOG000015880 InParanoid:Q23405
KO:K08740 OMA:GFFIQMT NextBio:882779 GermOnline:ZK1127.11
Gene3D:3.30.420.110 SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 126 (49.4 bits), Expect = 0.00043, P = 0.00043
Identities = 63/249 (25%), Positives = 110/249 (44%)
Query: 566 SLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGS-QVLSALGGTLFYLKKSFLDETL 624
SL S NS+ G L +++ +ST G + ALG LK ++ ET
Sbjct: 133 SLQSISSKYFNSER---GERQLQSLMNAEVSTVSEGCLRRTLALGALAVLLK--YIHETR 187
Query: 625 LRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDS-------SGTLYAQLN 677
F + + L +M ++D + E+LE+ + + + TL + LN
Sbjct: 188 CVFFRVKSLRIK---EMGVNDTCMIDFVSWESLEIVDADDASKARKFQMKQKRTLMSVLN 244
Query: 678 HCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLL 737
H VT G RLLR+ + +P + LI+ RQ+A+ L G Q + R+ LSR +++R++
Sbjct: 245 HTVTTNGYRLLRSSVLQPSTDVYLIQSRQEAIEELIGKPQ-LKDKLRRTLSRAHELDRVI 303
Query: 738 ARLFASSEA-NGRNS----NKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENT 792
A +S + R S N+++ K +Q + LH ++ L++
Sbjct: 304 AMCIQTSTSWTVRESEAKINQIIKLMHTLKV-IQGIRTLLHSAKMKSNILIEKTEFLKDP 362
Query: 793 ESRQLHHIL 801
Q+ +IL
Sbjct: 363 RFDQIMNIL 371
>ZFIN|ZDB-GENE-040426-2932 [details] [associations]
symbol:msh2 "mutS homolog 2 (E. coli)"
species:7955 "Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA;ISS] [GO:0032302 "MutSbeta complex"
evidence=IEA;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IGI;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0010224 "response to UV-B" evidence=IBA] [GO:0031573 "intra-S
DNA damage checkpoint" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0045190 "isotype switching" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0042771 "intrinsic apoptotic
signaling pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0016446
"somatic hypermutation of immunoglobulin genes" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-040426-2932 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0045190 GO:GO:0010165 GO:GO:0010224
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0031573 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOVERGEN:HBG006399
HSSP:P23909 EMBL:AF412833 IPI:IPI00509799 UniGene:Dr.105564
ProteinModelPortal:Q90XA7 SMR:Q90XA7 STRING:Q90XA7
InParanoid:Q90XA7 ArrayExpress:Q90XA7 Uniprot:Q90XA7
Length = 936
Score = 126 (49.4 bits), Expect = 0.00049, P = 0.00049
Identities = 55/175 (31%), Positives = 84/175 (48%)
Query: 605 LSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSR 664
+S L + YL+ DE F F++ + F D+ + YM LD A++ L +F+ S
Sbjct: 267 MSCLEAVIRYLEL-LADEA--NFGSFKM---TTF-DLNQ--YMRLDNAAVQALNLFQGS- 316
Query: 665 SGDSSGT--LYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE 722
D++GT L LN C T G+RL+ W+ +PL + I ER D V V E
Sbjct: 317 CDDATGTHSLAGLLNKCRTPQGQRLVNQWIKQPLIDKNKIEERLDLVETF--VEDS---E 371
Query: 723 FRKA-----LSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISAL 772
RK+ L R PD+ R+ A+ F +N ++ +V Y+ QL + AL
Sbjct: 372 LRKSCQEDLLRRFPDLNRM-AKKFQRQSSNLQDCYRV--YQSVG--QLPNVVLAL 421
>SGD|S000001891 [details] [associations]
symbol:MSH4 "Protein involved in meiotic recombination"
species:4932 "Saccharomyces cerevisiae" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;IPI]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983 "mismatched
DNA binding" evidence=IEA;IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IRD]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001891 GO:GO:0005524 EMBL:D50617
EMBL:BK006940 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U13999
PIR:A55201 RefSeq:NP_116652.1 ProteinModelPortal:P40965 SMR:P40965
DIP:DIP-2426N IntAct:P40965 MINT:MINT-565232 STRING:P40965
EnsemblFungi:YFL003C GeneID:850545 KEGG:sce:YFL003C
HOGENOM:HOG000094365 OMA:MSGKSVY OrthoDB:EOG4VHPFT NextBio:966313
Genevestigator:P40965 GermOnline:YFL003C Uniprot:P40965
Length = 878
Score = 117 (46.2 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 39/159 (24%), Positives = 76/159 (47%)
Query: 647 MVLDAPALENLEVFENSRSGDSSG-TLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRER 705
M++D+ + LE+ EN D +G +L+ L+ T G+R LR + +PL + G I R
Sbjct: 265 MLIDSKTVRGLELVENKL--DKNGISLWKFLDTTSTKMGQRSLRNSILQPLTDRGSIEMR 322
Query: 706 QDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFA---SSEANGRNSNKVVLYEDAAK 762
+A+ L+ N + R + LPD+++L +RL S+ + N V+L ++ +
Sbjct: 323 LEALEELKA-NDDLLQKLRLEMKSLPDLDKLFSRLLCINHSAIKPDQRINYVLLLKETLQ 381
Query: 763 KQLQEFISALHGCELMDQACSSLGAILENTESRQLHHIL 801
++ AL+ + + S I N ++ ++
Sbjct: 382 S-VKSLKDALNDQLIQSRLISETKKIFNNDAIMEIEKLI 419
Score = 58 (25.5 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 475 GICVVDVATSRIILGQVMXXXXXXXXXXXXXXXRPVEIIKPANMLSPETER 525
G+C+++ T ++ L M +P EI+ P++ L+P +
Sbjct: 121 GLCIINCNTGQMYLSDFMDSQIYIRVVHKLQIYQPTEILIPSSSLAPTVSK 171
Score = 44 (20.5 bits), Expect = 0.00051, Sum P(3) = 0.00051
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 914 NIKKLLGELSQAESEKESALKSILQRLIGQFCEHHN 949
NI LL ++++A +E E + + Q+ I Q HN
Sbjct: 810 NIHSLL-KIAKARTENEDSNGVVDQKTINQMKRIHN 844
>UNIPROTKB|A2ABE9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007696 InterPro:IPR007861
Pfam:PF05190 Pfam:PF05192 SMART:SM00533 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:AL844216 EMBL:CR936239 eggNOG:COG0249 SUPFAM:SSF48334
EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328 ChiTaRS:MSH5
Ensembl:ENST00000412201 Ensembl:ENST00000425344
Ensembl:ENST00000435942 Ensembl:ENST00000443665
Ensembl:ENST00000450148 Uniprot:A2ABE9
Length = 333
Score = 119 (46.9 bits), Expect = 0.00061, P = 0.00061
Identities = 72/310 (23%), Positives = 129/310 (41%)
Query: 607 ALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSR-- 664
ALGG L +L + + L + +P GF + +D L++F++
Sbjct: 19 ALGGLLKFLGRRRIGVELEDYNVS--VPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHP 76
Query: 665 ------SGDSSG-TLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAG-LRGVN 716
SG G +L+ LN C +G++LLR W RP ++ G + R D + L N
Sbjct: 77 SVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQN 136
Query: 717 QPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCE 776
A + L + ++ +L R+ S + + S+ VLY K + + C
Sbjct: 137 LDMAQMLHRLLGHIKNVPLILKRMKLS---HTKVSDWQVLY-----KTVYSALGLRDACR 188
Query: 777 LMDQACSSLGAILENTESRQLHHILTP-GKGLPAIVSILKHFKDAFDWVEANNSGRIIPH 835
+ Q+ I + S LHHI + GK +S F+ + A N ++P+
Sbjct: 189 SLPQSIQLFRDIAQEF-SDDLHHIASLIGK---VYLSPQVDFEGSL----AENRFTVLPN 240
Query: 836 GGVDMDYDSACKKVKEIEASLT----KHLKEQRKLLGDTSITYVT-IGKDLYLLEVPESL 890
+D + D +++ + + LT K L+ + S+ Y+ IG L + +P +
Sbjct: 241 --IDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMV 298
Query: 891 RGSVPRDYEL 900
S D+E+
Sbjct: 299 EAS---DFEI 305
>UNIPROTKB|H9L224 [details] [associations]
symbol:H9L224 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007695 InterPro:IPR016151
Pfam:PF01624 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GeneTree:ENSGT00550000074949
EMBL:AADN02030667 Ensembl:ENSGALT00000035738 Uniprot:H9L224
Length = 261
Score = 116 (45.9 bits), Expect = 0.00077, P = 0.00076
Identities = 32/115 (27%), Positives = 58/115 (50%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ-PHCGFPERNFSMNV 391
Q+ E K ++ D ++ + G Y F DA + +KEL++ + P ++V
Sbjct: 107 QFIEMKKRYKDAILCVECGYKYRFFGEDAEIASKELNICCHQDHNFMTASIPTHRLFVHV 166
Query: 392 EKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELL 446
+L KG++V V++Q ET L+ + K S + R++ A+ TK TL ++L
Sbjct: 167 RRLVAKGHKVGVIKQMETAA-LKAAGENKSS---LFSRKLTALYTKSTLIGEDIL 217
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 987 816 0.0010 121 3 11 22 0.40 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 107
No. of states in DFA: 629 (67 KB)
Total size of DFA: 406 KB (2197 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 68.45u 0.10s 68.55t Elapsed: 00:00:04
Total cpu time: 68.49u 0.10s 68.59t Elapsed: 00:00:04
Start: Tue May 21 12:21:59 2013 End: Tue May 21 12:22:03 2013
WARNINGS ISSUED: 1