Query 001977
Match_columns 987
No_of_seqs 462 out of 2009
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 07:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o8b_B DNA mismatch repair pro 100.0 1E-118 4E-123 1130.2 62.9 685 278-987 18-742 (1022)
2 3thx_B DNA mismatch repair pro 100.0 6.5E-97 2E-101 918.7 62.5 601 325-987 11-636 (918)
3 1wb9_A DNA mismatch repair pro 100.0 5.3E-93 1.8E-97 877.6 56.0 557 326-987 9-573 (800)
4 1ewq_A DNA mismatch repair pro 100.0 6.4E-90 2.2E-94 845.5 45.9 529 326-986 12-547 (765)
5 3thx_A DNA mismatch repair pro 100.0 3.1E-81 1E-85 780.5 51.4 584 326-987 15-625 (934)
6 2dig_A Lamin-B receptor; tudor 97.4 0.00061 2.1E-08 55.6 7.9 44 105-148 14-57 (68)
7 2l8d_A Lamin-B receptor; DNA b 97.3 0.00037 1.3E-08 56.7 6.4 44 105-148 11-54 (66)
8 2g3r_A Tumor suppressor P53-bi 97.3 0.00033 1.1E-08 64.4 5.9 47 101-148 2-48 (123)
9 3p8d_A Medulloblastoma antigen 97.2 0.00061 2.1E-08 57.0 6.2 46 103-150 6-51 (67)
10 2equ_A PHD finger protein 20-l 97.2 0.00076 2.6E-08 57.9 6.7 52 102-157 8-59 (74)
11 1mhn_A SurviVal motor neuron p 97.1 0.00087 3E-08 55.0 6.3 47 104-150 4-51 (59)
12 4a4f_A SurviVal of motor neuro 97.0 0.0012 4E-08 55.2 6.2 48 103-150 8-56 (64)
13 3s6w_A Tudor domain-containing 97.0 0.0013 4.5E-08 52.9 6.2 47 105-151 3-50 (54)
14 3qii_A PHD finger protein 20; 96.9 0.0014 4.7E-08 57.2 6.5 48 101-150 19-66 (85)
15 2eqj_A Metal-response element- 96.7 0.0028 9.5E-08 52.3 6.3 47 103-150 13-59 (66)
16 2m0o_A PHD finger protein 1; t 96.6 0.0089 3.1E-07 50.3 8.7 45 105-150 28-72 (79)
17 1g5v_A SurviVal motor neuron p 96.6 0.0037 1.3E-07 55.5 6.7 49 103-151 10-59 (88)
18 2ldm_A Uncharacterized protein 95.6 0.00035 1.2E-08 60.7 0.0 45 104-150 7-51 (81)
19 1ssf_A Transformation related 96.5 0.0037 1.3E-07 60.0 6.2 50 100-150 5-54 (156)
20 2d9t_A Tudor domain-containing 96.3 0.0066 2.3E-07 52.7 6.2 47 104-150 10-57 (78)
21 3pnw_C Tudor domain-containing 96.0 0.012 3.9E-07 51.0 6.5 48 103-150 17-65 (77)
22 4hcz_A PHD finger protein 1; p 95.2 0.045 1.5E-06 43.8 6.4 44 106-150 6-49 (58)
23 2xk0_A Polycomb protein PCL; t 94.4 0.13 4.5E-06 42.5 7.3 44 104-150 16-59 (69)
24 3fdr_A Tudor and KH domain-con 94.4 0.063 2.1E-06 48.1 6.2 46 104-150 28-74 (94)
25 2eqk_A Tudor domain-containing 94.3 0.069 2.4E-06 46.6 6.0 47 105-151 23-69 (85)
26 2diq_A Tudor and KH domain-con 93.0 0.09 3.1E-06 48.6 4.7 46 104-150 33-79 (110)
27 2e5q_A PHD finger protein 19; 91.3 0.34 1.2E-05 39.2 5.4 45 105-150 9-53 (63)
28 2e5p_A Protein PHF1, PHD finge 91.0 0.52 1.8E-05 38.7 6.3 46 104-150 10-55 (68)
29 2wac_A CG7008-PA; unknown func 88.7 0.57 1.9E-05 48.2 6.5 44 105-150 53-97 (218)
30 3h8z_A FragIle X mental retard 86.9 1.2 4.3E-05 42.0 6.9 37 105-143 62-102 (128)
31 3ntk_A Maternal protein tudor; 86.6 0.74 2.5E-05 45.8 5.5 50 103-157 47-97 (169)
32 1wgs_A MYST histone acetyltran 86.1 1.5 5.2E-05 41.7 7.2 39 105-144 14-56 (133)
33 4b9x_A TDRD1, tudor domain-con 85.3 1.2 4E-05 46.5 6.5 44 106-150 68-112 (226)
34 3dlm_A Histone-lysine N-methyl 83.1 1.4 4.9E-05 44.8 5.7 50 102-151 67-120 (213)
35 2ro0_A Histone acetyltransfera 82.3 4.5 0.00015 36.0 7.9 37 105-143 25-63 (92)
36 2hqx_A P100 CO-activator tudor 80.5 2 6.7E-05 45.2 6.0 44 105-150 67-111 (246)
37 2eko_A Histone acetyltransfera 79.0 2.7 9.3E-05 36.9 5.3 43 102-144 8-55 (87)
38 4b9w_A TDRD1, tudor domain-con 78.2 3.1 0.00011 42.4 6.5 50 105-157 67-117 (201)
39 2lcc_A AT-rich interactive dom 76.5 2.9 9.9E-05 35.8 4.7 39 105-143 7-49 (76)
40 2rnz_A Histone acetyltransfera 74.5 11 0.00036 33.6 7.9 38 105-144 27-66 (94)
41 2bud_A Males-absent on the fir 66.7 13 0.00046 32.8 6.7 38 107-145 18-60 (92)
42 2f5k_A MORF-related gene 15 is 66.0 6.6 0.00023 35.5 4.8 38 104-143 23-62 (102)
43 3bdl_A Staphylococcal nuclease 64.4 6.9 0.00024 46.4 6.0 45 104-150 412-457 (570)
44 2eqm_A PHD finger protein 20-l 59.6 47 0.0016 29.0 9.0 47 106-153 22-71 (88)
45 2qqr_A JMJC domain-containing 59.4 8 0.00027 35.9 4.1 38 104-143 6-43 (118)
46 3dlm_A Histone-lysine N-methyl 53.2 16 0.00056 37.1 5.6 44 102-146 7-52 (213)
47 3ask_A E3 ubiquitin-protein li 49.7 22 0.00074 36.8 5.9 45 106-150 5-59 (226)
48 3sd4_A PHD finger protein 20; 47.9 53 0.0018 27.2 7.1 45 106-151 15-62 (69)
49 2lcd_A AT-rich interactive dom 53.0 4 0.00014 37.3 0.0 51 98-150 51-101 (118)
50 1vhx_A Putative holliday junct 47.0 57 0.002 31.3 8.3 45 471-515 12-62 (150)
51 2xdp_A Lysine-specific demethy 44.0 7.2 0.00025 36.5 1.2 40 103-144 6-45 (123)
52 2qqr_A JMJC domain-containing 37.9 45 0.0015 30.8 5.5 51 102-156 62-112 (118)
53 2xdp_A Lysine-specific demethy 37.0 45 0.0016 31.1 5.4 41 102-144 63-103 (123)
54 2fhd_A RAD9 homolog, DNA repai 36.5 70 0.0024 30.6 6.6 42 105-146 7-53 (153)
55 1iv0_A Hypothetical protein; r 34.9 62 0.0021 28.8 5.9 46 470-515 9-58 (98)
56 2lrq_A Protein MRG15, NUA4 com 37.0 10 0.00036 33.1 0.0 36 105-142 14-51 (85)
57 3m9q_A Protein MALE-specific l 30.4 77 0.0026 28.5 5.6 37 105-141 21-67 (101)
58 1nu0_A Hypothetical protein YQ 27.8 1.5E+02 0.0053 27.9 7.6 53 454-515 4-60 (138)
59 3mea_A SAGA-associated factor 27.0 1.8E+02 0.0062 28.8 8.2 54 104-157 45-102 (180)
60 3h8z_A FragIle X mental retard 26.1 84 0.0029 29.5 5.3 32 107-141 5-36 (128)
61 3m9p_A MALE-specific lethal 3 25.9 89 0.0031 28.5 5.2 38 105-142 21-68 (110)
62 3s6n_F Small nuclear ribonucle 25.4 1.3E+02 0.0044 26.0 6.1 40 103-143 12-54 (86)
63 2ju4_A GMP-PDE gamma, retinal 24.4 65 0.0022 27.1 3.6 53 60-116 13-70 (87)
64 1n9r_A SMF, small nuclear ribo 24.1 1.5E+02 0.0052 26.0 6.4 41 102-142 26-69 (93)
65 1y96_A Gemin6, SIP2, GEM-assoc 23.6 68 0.0023 28.0 3.8 33 104-137 14-46 (86)
66 1ljo_A Archaeal SM-like protei 23.2 2E+02 0.0068 24.0 6.8 40 103-142 11-53 (77)
67 1h64_1 SnRNP SM-like protein; 23.2 2E+02 0.0068 23.8 6.8 39 103-142 10-51 (75)
68 4emk_B U6 snRNA-associated SM- 23.0 99 0.0034 25.8 4.8 39 103-142 10-51 (75)
69 4emh_A Probable U6 snRNA-assoc 21.9 2.2E+02 0.0076 25.6 7.1 59 100-159 19-85 (105)
70 2coi_A Branched chain aminotra 21.4 34 0.0012 38.3 2.0 71 100-171 48-124 (386)
71 2h8h_A Proto-oncogene tyrosine 20.3 61 0.0021 37.6 3.9 20 106-125 106-125 (535)
No 1
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=1.2e-118 Score=1130.20 Aligned_cols=685 Identities=36% Similarity=0.620 Sum_probs=563.7
Q ss_pred ccchhhhhhhccccccccCC-CCCccCCCCCCCCCCCCccCCCCcccccCCCHHHHHHHHHHhhCCCeEEEEeeCCeEEE
Q 001977 278 GDVSERFSAREADKFHFLGP-DRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYEL 356 (987)
Q Consensus 278 ~~~~~~~~~~~~~~~~fl~~-~~rD~~~r~p~dp~YDp~TL~iP~~~~~~~TP~~~Qyw~iK~~~~D~Vlffk~GkFYEl 356 (987)
|+..++++.|.|++|+||++ +|||++||||+||+|||||||||+++|+++||||||||+||++|||+|||||||+||||
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~rD~~~r~~~~p~ydp~tl~ip~~~~~~~TPmm~Qy~~iK~~~~d~llffr~GdFYEl 97 (1022)
T 2o8b_B 18 GDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYEL 97 (1022)
T ss_dssp ------CCSCGGGGCGGGSTTTCCCTTCCCTTSTTCCTTCCCCCHHHHTTSCHHHHHHHHHHHHCTTSEEEEEETTEEEE
T ss_pred CCccccccccccccchhcCccccccccCCCCCCCCCCCCcccCCchhhccCCHHHHHHHHHHHhCCCEEEEEECCCEEEE
Confidence 56778889999999999997 79999999999999999999999999999999999999999999999999999999999
Q ss_pred echhHHHHHHhccceeccCCCCccccCcccHHHHHHHHHHcCCeEEEEeccCChHHHHHhhhhcC---CCCCeeEEEEEE
Q 001977 357 FEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKG---SKDKVVKREICA 433 (987)
Q Consensus 357 y~~DA~i~~~~L~l~~~~~~~~~~GfPe~s~~~~~~~Lv~~GykVavveQ~Et~~~~~~R~k~~g---~k~kvv~Rev~~ 433 (987)
|++||+++|++|||++|+|++||||||+|+++.|+++||++|||||||||+|+|.+++.|.+.++ +++++|+||||+
T Consensus 98 f~~DA~~~a~~L~i~lt~~~~pmaGvP~ha~~~yl~~Lv~~GykVai~eQ~e~p~~~~~r~~~~~~~~k~~~~v~Rev~r 177 (1022)
T 2o8b_B 98 YHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICR 177 (1022)
T ss_dssp EHHHHHHHHHHHCCCCCSSSSCEEEEEGGGHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHTCSSCCSGGGSCCEEEEE
T ss_pred ehhhHHHHHHhcCeEEecCCCCCCCCchhHHHHHHHHHHHCCCeEEEEeCCCCchhhhhhhhhcccccccCCceeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999998888877543 446899999999
Q ss_pred EEecCccccccc---cCCCCCCcEEEEEEecCCCCCCCCCCCEEEEEEEeCCCCeEEEEEEcCcchHHHHHHHHHhcCCc
Q 001977 434 VVTKGTLTEGEL---LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPV 510 (987)
Q Consensus 434 V~TpGTl~d~~~---l~~~~~~~yLlaI~e~~~~~~~~~~~~~~Gva~vD~sTG~f~l~qf~Dd~~~s~L~tlL~~~~P~ 510 (987)
||||||++++.+ +. ...++||+||++.... ..+....|||||+|++||+|++++|.|+..+++|.++|.+++|+
T Consensus 178 vvTpGT~~d~~~~~~l~-~~~~n~l~ai~~~~~~--~~~~~~~~Gla~~D~sTGe~~~~e~~d~~~~~~L~~~L~~~~P~ 254 (1022)
T 2o8b_B 178 IITKGTQTYSVLEGDPS-ENYSKYLLSLKEKEED--SSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPV 254 (1022)
T ss_dssp EECTTSCCCCTTSCCCS-CSSCCEEEEEEEEECS--CC-CCEEEEEEEECTTTCCEEEEEEEECSSCHHHHHHHHHSCEE
T ss_pred EECCCeeeccccccccc-CCCCcEEEEEEEcccc--ccCCCcEEEEEEEECCCCEEEEEEecCchHHHHHHHHHHhcCCc
Confidence 999999999874 43 3478999999974211 01123579999999999999999999998899999999999999
Q ss_pred EEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhhHHHHH--HHHhhhccccccccccccccccccCCCCCCcc
Q 001977 511 EIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIK--NIYNRITAESLNKADSNVANSQAEGDGLTCLP 588 (987)
Q Consensus 511 EIl~~~~~ls~~t~~~l~~~~~~~~~~~l~p~~~f~d~~~~~~~l~--~~~~~~~~~~~~k~d~~~~~~~~~~~~~~~~p 588 (987)
|||++.+.++..+.+++.......+...+.+...||+...+...+. .+|..... ......||
T Consensus 255 Eil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~~~~----------------~~~~~~~~ 318 (1022)
T 2o8b_B 255 QVLFEKGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLS----------------DGIGVMLP 318 (1022)
T ss_dssp EEEEETTTCCHHHHHHHTTTTTTSEEEEECBTTTBCCHHHHHHHHHHTTTTSSSSC----------------CCC-CCCC
T ss_pred EEEecCCccchHHHHHHHhhhhhhhhhhcccchhhcchhhHHhhhhhhhhcccccc----------------cccchhhH
Confidence 9999988777766665543322222222335567898777665443 34432110 00013567
Q ss_pred hhhhhhhcc----C----CCchHHHHHHHHHHHHHHHhcchhhhhcccccccccCCCc----------cccCCCCeeecC
Q 001977 589 GILSELIST----G----DSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGF----------GDMAKKPYMVLD 650 (987)
Q Consensus 589 ~~l~~l~~~----~----~~~~lal~AlgalL~YL~~~~ld~~ll~~~~f~~~~~~~~----------~~~~~~~~M~LD 650 (987)
..+..+... + ....++++|+|+||+||+.++++..++..++|..|..... ..+...++|+||
T Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~a~~A~gall~Yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~LD 398 (1022)
T 2o8b_B 319 QVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLD 398 (1022)
T ss_dssp HHHHHTEECCSTTCSEECGGGHHHHHHHHHHHHHHHHHTCHHHHHTTCCEEECCCGGGGTCC---------CCCCBCBCC
T ss_pred HHHHHhhcchhhcccccccccHHHHHHHHHHHHHHHHhCcchhhhccccccccccccccccccccccccccCCCCeEEeC
Confidence 666544311 1 1346789999999999999988776666666654421100 113567899999
Q ss_pred HHHHHhccCcccCCCCCCcchhhhhhhccCChHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHhcCCC
Q 001977 651 APALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRL 730 (987)
Q Consensus 651 ~~TL~nLEI~~n~~~g~~~gSL~~lLn~c~T~~GkRLLr~WL~~PL~d~~~I~~RldaVe~L~~~n~~l~~~lr~~Lk~l 730 (987)
++|++||||++|.++|+.+||||++||+|+|+||+||||+||++||+|++.|++|||+|++|++ +..++..++..|+++
T Consensus 399 ~~T~~nLEl~~~~~~g~~~gSLl~~Ld~t~T~mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~-~~~~~~~l~~~L~~i 477 (1022)
T 2o8b_B 399 AVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMV-VPDKISEVVELLKKL 477 (1022)
T ss_dssp HHHHHHTTCSSCCSSSSCCCSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCccCCCCCCCCcHHHHhCcCCCchhHHHHHHHHhCccCCHHHHHHHHHHHHHHHh-ChHHHHHHHHHHhcC
Confidence 9999999999998889999999999999999999999999999999999999999999999997 678899999999999
Q ss_pred CCHHHHHHHHhcCcccc---CcCCcchhhhHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcChHHHHHhhcCC-
Q 001977 731 PDMERLLARLFASSEAN---GRNSNKVVLYED--AAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPG- 804 (987)
Q Consensus 731 pDLERll~Ri~~~~~~~---~r~~~~~ilye~--~~~~~L~~~~~~L~~~~~i~~~~~~l~~~l~~~~s~lL~~l~~~~- 804 (987)
|||||+++||+.++.+. .+...++++|++ .+++++.+|+.++.++..+..+...+........+++|..+....
T Consensus 478 ~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~~~~s~lL~~~~~~~~ 557 (1022)
T 2o8b_B 478 PDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQT 557 (1022)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTSBTT
T ss_pred ccHHHHHHHHHhcCCcccccccchhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHhhc
Confidence 99999999998632110 122345566665 367788888888766655544433333223345678888886422
Q ss_pred ----CCchhHHHHHHHHHhhcchhhhcCCCCeeeCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEEcCe
Q 001977 805 ----KGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKD 880 (987)
Q Consensus 805 ----~~lp~l~~ll~~i~~~iD~~~a~~~g~iipk~G~d~eLD~lr~~i~~ie~~L~~~l~~~~k~l~~~~iky~~~~k~ 880 (987)
..++++.++++.|..+||...+.+.|.+++++|++++||++|+.+++++++|+++++++++.+++++++|++++++
T Consensus 558 ~~~~~~~~~l~~~~~~~~~~id~~~~~~~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 637 (1022)
T 2o8b_B 558 KNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRN 637 (1022)
T ss_dssp TSSSSCBCCCHHHHHHHHTTSCHHHHHHSCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSSGGGSSCSCCEEECCGGG
T ss_pred cccccchHHHHHHHHHHHHHhCchhhhcCCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence 4678899999999999998766667888889999999999999999999999999999999999988999999999
Q ss_pred eEEEEecccccCC-CCCCeEEEEeecCeEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001977 881 LYLLEVPESLRGS-VPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATA 959 (987)
Q Consensus 881 gY~IeVp~~~~~k-vP~~~~~~ss~kg~~rf~tpel~eL~~el~~~~~~~~~~~~~il~~L~~~~~~~~~~l~~~~~~iA 959 (987)
+|+|+|+.+...+ +|++|++.++++|.+||+||++.+++.++..+++++...+..++.++++.+.+++..|..+++++|
T Consensus 638 ~y~i~v~~~~~~~~vp~~~~~~~t~~~~~rf~t~el~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la 717 (1022)
T 2o8b_B 638 RYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIA 717 (1022)
T ss_dssp CCEEEECTTTTSSCCCC-CEEEEETTEEEECCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred eEEEEEehhhhcccCCCceEEeeeccCccEEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998777 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccchhhhhhcc--cCCceecccC
Q 001977 960 GLTLILLDGSLLHAFLIL--QSNSCSSEMN 987 (987)
Q Consensus 960 eLD~L~Sla~l~kA~~A~--~~~yvRP~in 987 (987)
+||||+|+ |.+|. ..+||||+|+
T Consensus 718 ~lD~l~s~-----A~~a~~~~~~~~~P~~~ 742 (1022)
T 2o8b_B 718 VLDVLLCL-----ANYSRGGDGPMCRPVIL 742 (1022)
T ss_dssp HHHHHHHH-----HHHTTCSSSCEECCEEC
T ss_pred HHHHHHhH-----HHHHhhccCCccCCccc
Confidence 99999998 77787 8999999873
No 2
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=6.5e-97 Score=918.66 Aligned_cols=601 Identities=23% Similarity=0.372 Sum_probs=476.0
Q ss_pred cCCCHHHHHHHHHHhhCCCeEEEEeeCCeEEEechhHHHHHHhccceeccC-CCCccccCcccHHHHHHHHHHcCCeEEE
Q 001977 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-EQPHCGFPERNFSMNVEKLARKGYRVLV 403 (987)
Q Consensus 325 ~~~TP~~~Qyw~iK~~~~D~Vlffk~GkFYEly~~DA~i~~~~L~l~~~~~-~~~~~GfPe~s~~~~~~~Lv~~GykVav 403 (987)
.++||||||||+||++|||+|||||||||||||++||+++|++|||+++.+ ++||||||+|+++.|+++||++||||||
T Consensus 11 ~~~TPmm~Qy~~iK~~~~D~lLffr~GdFYElF~eDA~~as~~L~i~lt~~~~~pmaGvP~ha~~~yl~rLv~~G~kVai 90 (918)
T 3thx_B 11 SIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVRRLVAKGYKVGV 90 (918)
T ss_dssp TTSCHHHHHHHHHHTTTTTSEEEEECSSEEEEEHHHHHHHHHHHTCCCEEETTEEEEEEEGGGHHHHHHHHHHHTCCEEE
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEEcCCEeeeeHhhHHHHHHHhCceeecCCCeeEEeccHhHHHHHHHHHHHcCCcEEE
Confidence 479999999999999999999999999999999999999999999998765 6899999999999999999999999999
Q ss_pred EeccCChHHHHHhhhhcCCCCCeeEEEEEEEEecCccccccc---------------cCCCCCCcEEEEEEecCCCCCC-
Q 001977 404 VEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL---------------LSANPDASYLMALTESNQSPAS- 467 (987)
Q Consensus 404 veQ~Et~~~~~~R~k~~g~k~kvv~Rev~~V~TpGTl~d~~~---------------l~~~~~~~yLlaI~e~~~~~~~- 467 (987)
|||+|+|.+++. +++|+++|+||||+||||||++++++ +.. ..++||+||.+.......
T Consensus 91 ~eQ~E~p~~k~~----~~~k~~~v~R~v~rvvTpGT~~d~~~~~~~~~~~~~~~~~~l~~-~~~nyL~ai~~~~~~~~~~ 165 (918)
T 3thx_B 91 VKQTETAALKAI----GDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTD-TSTSYLLCISENKENVRDK 165 (918)
T ss_dssp EEECSCHHHHTT----STTCSSCCCEEEEEEECTTCCCSTTTCCEEEC--CEEECCCSCT-TSCCCEEEEEEEC------
T ss_pred EeccCChhhhhc----ccccCCceeeeEEEEECCCcccccccccccccccccccccccCC-CCCcEEEEEEecccccccc
Confidence 999999986421 22456799999999999999999876 433 468999999975421100
Q ss_pred CCCCCEEEEEEEeCCCCeEEEEEEcCcchHHHHHHHHHhcCCcEEEecCCCCChHHHHHHHhhc----C-CCccccccCC
Q 001977 468 QSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHT----R-NPLVNDLVPL 542 (987)
Q Consensus 468 ~~~~~~~Gva~vD~sTG~f~l~qf~Dd~~~s~L~tlL~~~~P~EIl~~~~~ls~~t~~~l~~~~----~-~~~~~~l~p~ 542 (987)
.++...|||||+|+|||+|.+++|.|+..+++|.+.|.+++|+|||++.+ ++..+.+++.... . ........+
T Consensus 166 ~~~~~~~Gla~~D~sTGef~~~~f~d~~~~~~L~~~L~~~~P~Eil~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 243 (918)
T 3thx_B 166 KKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSA-LSEQTEALIHRATSVSVQDDRIRVERMD- 243 (918)
T ss_dssp ---CEEEEEEEEETTTTEEEEEEEEECTTCHHHHHHHHHHCCSEEEEESS-CCHHHHHHHHHHHHSSCSSSCCEEEEEC-
T ss_pred cccCceEEEEEEEccCCeEEEEEecCchhHHHHHHHHHhcCCeEEEecCC-cchHHHHHHHhhhcccccccceeEEecc-
Confidence 11234799999999999999999999988999999999999999999985 4555444333221 0 111111222
Q ss_pred ccccChhhhHHHHHHHHhhhccccccccccccccccccCCCCCCcchhhhhhhccCCCchHHHHHHHHHHHHHHHhcchh
Q 001977 543 SEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDE 622 (987)
Q Consensus 543 ~~f~d~~~~~~~l~~~~~~~~~~~~~k~d~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~lal~AlgalL~YL~~~~ld~ 622 (987)
..+|+...+.+.|..+|..... ..+|... +..+. .....+++|+|++|+||++++++.
T Consensus 244 ~~~f~~~~a~~~l~~~f~~~~l---------------~~~g~~~----~~~~~---~~~~~~~~A~gall~Yl~~~~~~~ 301 (918)
T 3thx_B 244 NIYFEYSHAFQAVTEFYAKDTV---------------DIKGSQI----ISGIV---NLEKPVICSLAAIIKYLKEFNLEK 301 (918)
T ss_dssp GGGTSHHHHHHHHHHHCC---------------------------------CC---CCCHHHHHHHHHHHHHHHHTTCGG
T ss_pred ccccChhHHHHHHHHHhCcccc---------------ccccchh----hhhhh---cccHHHHHHHHHHHHHHHHhcccc
Confidence 3567877788888887753211 1112111 11111 123578999999999999988765
Q ss_pred hhhcccccccccCCCccccCCCCeeecCHHHHHhccCcccCCCCCCcchhhhhhhccCChHHHHHHHHHhhCcCCCHHHH
Q 001977 623 TLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLI 702 (987)
Q Consensus 623 ~ll~~~~f~~~~~~~~~~~~~~~~M~LD~~TL~nLEI~~n~~~g~~~gSL~~lLn~c~T~~GkRLLr~WL~~PL~d~~~I 702 (987)
.+....+|..| ....++|+||++|++||||++|.++|+.+||||++||+|+|+||+||||+||++||+|++.|
T Consensus 302 ~l~~~~~~~~~-------~~~~~~m~LD~~T~rnLEL~~~~~~~~~~gSLl~~Ld~t~T~mG~RlLr~Wl~~PL~d~~~I 374 (918)
T 3thx_B 302 MLSKPENFKQL-------SSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREI 374 (918)
T ss_dssp GGSCGGGEEES-------CCTTTBCEECHHHHHHTTSSSCTTTCSSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHH
T ss_pred cccccccceee-------cCCCCEEEECHHHHHhcCCcccCCCCCCCCcHHHHHhhCCChHHHHHHHHHHhCcCCCHHHH
Confidence 44444555433 13467999999999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHHHHHHHhcCccccCcCCcchhhhHHHHHHHHHHHHHHHhhhH-HHHHH
Q 001977 703 RERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCE-LMDQA 781 (987)
Q Consensus 703 ~~RldaVe~L~~~n~~l~~~lr~~Lk~lpDLERll~Ri~~~~~~~~r~~~~~ilye~~~~~~L~~~~~~L~~~~-~i~~~ 781 (987)
++|||+|++|+..+..++..++..|+++|||||+++|++.+. + .++++..+.++|..+. .+...
T Consensus 375 ~~R~daVe~l~~~~~~~~~~l~~~L~~i~DleRll~ri~~~~-~--------------~~~dl~~l~~~l~~l~~~l~~~ 439 (918)
T 3thx_B 375 NARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKK-C--------------STQEFFLIVKTLYHLKSEFQAI 439 (918)
T ss_dssp HHHHHHHHHHHSCCCTHHHHHHHTTTTCCCHHHHHHHHHTTC-C--------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHccCccHHHHHHHhccCc-C--------------CHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999975455678889999999999999999998643 2 2467777777777655 33322
Q ss_pred HHHHHHHhhhcChHHHHHhhcCCCCchhHHHHHHHHHhhcchhhh--cCCCCeeeCCCCCHhHHHHHHHHHHHHHHHHHH
Q 001977 782 CSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEA--NNSGRIIPHGGVDMDYDSACKKVKEIEASLTKH 859 (987)
Q Consensus 782 ~~~l~~~l~~~~s~lL~~l~~~~~~lp~l~~ll~~i~~~iD~~~a--~~~g~iipk~G~d~eLD~lr~~i~~ie~~L~~~ 859 (987)
+.. +.....+++|..++. .++++...++.|.+.|+.... ...+.++......++|+.+++.+++++.+++++
T Consensus 440 l~~---~~~~~~~~lL~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 513 (918)
T 3thx_B 440 IPA---VNSHIQSDLLRTVIL---EIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMH 513 (918)
T ss_dssp HHH---HHHTCCCHHHHHHHT---HHHHHTGGGHHHHTTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---hhhhccCHHHHHHHH---hhhhhHHHHHHHHHHHHHhhhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 222 122346777877753 245444445566667764221 122334412223588999999999999999999
Q ss_pred HHHHHHHhCCCCeeEEEEcCeeEEEEecccccCCCCCCeEEEEeecCeEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001977 860 LKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQR 939 (987)
Q Consensus 860 l~~~~k~l~~~~iky~~~~k~gY~IeVp~~~~~kvP~~~~~~ss~kg~~rf~tpel~eL~~el~~~~~~~~~~~~~il~~ 939 (987)
++++++.++.+++.|+++.+++|+|+|+.+...++|++|+.++++++..||+||+++++++++..+++++...+..++.+
T Consensus 514 l~~~~~~i~~~~~~~~~~~g~~y~iev~~~~~~~vp~~~~~~~~~~~~~rf~tpel~~~~~~~~~~~e~~~~~e~~~~~~ 593 (918)
T 3thx_B 514 LQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLD 593 (918)
T ss_dssp HHHHHHHHTCTTCCCEEETTEEEEEEEETTSGGGSCSSCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccceeEeecCCEEEEEEcHHHHhhCCCeEEEEEecCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888889999989999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhhhcccCCceecccC
Q 001977 940 LIGQFCEHHNKWRQMVAATAGLTLILLDGSLLHAFLILQSNSCSSEMN 987 (987)
Q Consensus 940 L~~~~~~~~~~l~~~~~~iAeLD~L~Sla~l~kA~~A~~~~yvRP~in 987 (987)
++..|.+++..|..++++||+||||+|| |.+|...+||||+|+
T Consensus 594 l~~~~~~~~~~l~~~~~~la~lD~l~s~-----A~~a~~~~~~~P~~~ 636 (918)
T 3thx_B 594 FLEKFSEHYHSLCKAVHHLATVDCIFSL-----AKVAKQGDYCRPTVQ 636 (918)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHH-----HHHHTSSSCBCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhcCCCcCCccc
Confidence 9999999999999999999999999998 888999999999873
No 3
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=5.3e-93 Score=877.59 Aligned_cols=557 Identities=21% Similarity=0.322 Sum_probs=471.4
Q ss_pred CCCHHHHHHHHHHhhCCCeEEEEeeCCeEEEechhHHHHHHhccceeccC------CCCccccCcccHHHHHHHHHHcCC
Q 001977 326 NLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG------EQPHCGFPERNFSMNVEKLARKGY 399 (987)
Q Consensus 326 ~~TP~~~Qyw~iK~~~~D~Vlffk~GkFYEly~~DA~i~~~~L~l~~~~~------~~~~~GfPe~s~~~~~~~Lv~~Gy 399 (987)
++||||+|||+||++|||+|||||||+|||||++||+++|++|+|++|++ .+||||||+|+++.|+++||++||
T Consensus 9 ~~tp~~~qy~~ik~~~~d~~lffr~GdFYE~f~~DA~~~a~~l~i~lt~r~~~~~~~~pm~GvP~~~~~~yl~~Lv~~G~ 88 (800)
T 1wb9_A 9 AHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQGE 88 (800)
T ss_dssp GSCHHHHHHHHHHHHSTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEECCSSSCCEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCcEEeccccCCCCcCCccCCCHHHHHHHHHHHHHCCC
Confidence 46999999999999999999999999999999999999999999999875 379999999999999999999999
Q ss_pred eEEEEeccCChHHHHHhhhhcCCCCCeeEEEEEEEEecCccccccccCCCCCCcEEEEEEecCCCCCCCCCCCEEEEEEE
Q 001977 400 RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVV 479 (987)
Q Consensus 400 kVavveQ~Et~~~~~~R~k~~g~k~kvv~Rev~~V~TpGTl~d~~~l~~~~~~~yLlaI~e~~~~~~~~~~~~~~Gva~v 479 (987)
|||||||+|+|... .++|+|+||+|+||||+++++++.. ..++||+||.+.. ..||+||+
T Consensus 89 kVai~eQ~e~~~~~----------k~~v~R~v~~v~TpGT~~~~~~l~~-~~~n~l~ai~~~~---------~~~Gla~~ 148 (800)
T 1wb9_A 89 SVAICEQIGDPATS----------KGPVERKVVRIVTPGTISDEALLQE-RQDNLLAAIWQDS---------KGFGYATL 148 (800)
T ss_dssp CEEEEEECSCGGGC----------SSSCCEEEEEEECTTTCCCGGGSCT-TSCCCEEEEEECS---------SCEEEEEE
T ss_pred eEEEEEccCCcccc----------CCcceEEEEEEecCCcccccccccC-CCCcEEEEEEEcC---------CEEEEEEE
Confidence 99999999999641 2699999999999999999988864 4789999999752 36999999
Q ss_pred eCCCCeEEEEEEcCcchHHHHHHHHHhcCCcEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhhHHHHHHHH
Q 001977 480 DVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIY 559 (987)
Q Consensus 480 D~sTG~f~l~qf~Dd~~~s~L~tlL~~~~P~EIl~~~~~ls~~t~~~l~~~~~~~~~~~l~p~~~f~d~~~~~~~l~~~~ 559 (987)
|++||+|++++|.| +++|.++|.+++|+|||++.+..+.. +... ...+.. .+ ..+|+...+.+.|..+|
T Consensus 149 D~stg~~~~~~~~d---~~~l~~~l~~~~P~Eil~~~~~~~~~----l~~~--~~~~~~-~~-~~~f~~~~~~~~l~~~~ 217 (800)
T 1wb9_A 149 DISSGRFRLSEPAD---RETMAAELQRTNPAELLYAEDFAEMS----LIEG--RRGLRR-RP-LWEFEIDTARQQLNLQF 217 (800)
T ss_dssp CTTTCCEEEECCCS---HHHHHHHHHHHCCSEEEEETTCCCGG----GTTT--CSSEEE-EC-GGGGCHHHHHHHHHHHH
T ss_pred ECCCCEEEEEEecC---HHHHHHHHHhcCCeEEEEcCCCChHH----Hhhc--ccceEE-cc-ccccChhHHHHHHHHHh
Confidence 99999999999987 78999999999999999998754321 1111 111222 23 35678777777787777
Q ss_pred hhhccccccccccccccccccCCCCCCcchhhhhhhccCCCchHHHHHHHHHHHHHHHhcchhhhhcccccccccCCCcc
Q 001977 560 NRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFG 639 (987)
Q Consensus 560 ~~~~~~~~~k~d~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~lal~AlgalL~YL~~~~ld~~ll~~~~f~~~~~~~~~ 639 (987)
+... + ..++. .+..++++|+|+||.||+.++.. .+.... .+.
T Consensus 218 ~~~~---l------------~~~~~--------------~~~~~~~~a~gall~Yl~~~~~~-~~~~~~--------~~~ 259 (800)
T 1wb9_A 218 GTRD---L------------VGFGV--------------ENAPRGLCAAGCLLQYAKDTQRT-TLPHIR--------SIT 259 (800)
T ss_dssp TCSC---S------------GGGTC--------------TTCHHHHHHHHHHHHHHHHHHCS-CCTTCC--------CCE
T ss_pred Cccc---h------------hhccc--------------cCcHHHHHHHHHHHHHHHHhhhh-cccccc--------ccE
Confidence 5311 0 00110 12467899999999999998764 222222 234
Q ss_pred ccCCCCeeecCHHHHHhccCcccCCCCCCcchhhhhhhccCChHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHcCChHH
Q 001977 640 DMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPF 719 (987)
Q Consensus 640 ~~~~~~~M~LD~~TL~nLEI~~n~~~g~~~gSL~~lLn~c~T~~GkRLLr~WL~~PL~d~~~I~~RldaVe~L~~~n~~l 719 (987)
.+...++|+||.+|+++|||+++.+ |+++|||++++|+|+|+||+|+|++||++||+|+++|++|||+|++|+. +
T Consensus 260 ~~~~~~~m~ld~~t~~~LEl~~~~~-~~~~gSL~~ll~~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~----~ 334 (800)
T 1wb9_A 260 MEREQDSIIMDAATRRNLEITQNLA-GGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQD----F 334 (800)
T ss_dssp ECCGGGBCEECHHHHHHTTSSSCTT-SCSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGG----G
T ss_pred EEccCCEEEecHHHHHhccCcccCC-CCccccHHHHhCCCcCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHH----H
Confidence 4567889999999999999999876 5568999999999999999999999999999999999999999999985 6
Q ss_pred HHHHHHhcCCCCCHHHHHHHHhcCccccCcCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcChHHHHH
Q 001977 720 ALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHH 799 (987)
Q Consensus 720 ~~~lr~~Lk~lpDLERll~Ri~~~~~~~~r~~~~~ilye~~~~~~L~~~~~~L~~~~~i~~~~~~l~~~l~~~~s~lL~~ 799 (987)
+..++..|++++||+|+++|+..+. + .+++|..+..+|..+..+.+.+. ...+++|..
T Consensus 335 ~~~l~~~L~~~~Dler~l~r~~~~~-~--------------~~~dl~~l~~~l~~~~~l~~~l~-------~~~~~~L~~ 392 (800)
T 1wb9_A 335 TAGLQPVLRQVGDLERILARLALRT-A--------------RPRDLARMRHAFQQLPELRAQLE-------TVDSAPVQA 392 (800)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHTC-C--------------CHHHHHHHHHHHTTHHHHHHHHH-------SCCCHHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHHcCC-C--------------CHHHHHHHHHHHHHHHHHHHHHH-------hcCcHHHHH
Confidence 7788999999999999999998642 2 25689999999999888776543 235677777
Q ss_pred hhcCCCCchhHHHHHHHHHhhcchhh--hcCCCCeeeCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEE
Q 001977 800 ILTPGKGLPAIVSILKHFKDAFDWVE--ANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTI 877 (987)
Q Consensus 800 l~~~~~~lp~l~~ll~~i~~~iD~~~--a~~~g~iipk~G~d~eLD~lr~~i~~ie~~L~~~l~~~~k~l~~~~iky~~~ 877 (987)
+... ++.+.++.+.|+++||.+. ...+|++| ++|+|++||++|+.++++++.|.++++++++.++++.+++...
T Consensus 393 l~~~---l~~~~~l~~~i~~~i~~~~~~~~~~~~~I-~~g~~~eLd~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~i~~~ 468 (800)
T 1wb9_A 393 LREK---MGEFAELRDLLERAIIDTPPVLVRDGGVI-ASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGFN 468 (800)
T ss_dssp HHHH---HCCCHHHHHHHHHHBCSSCCSCSTTCCCB-CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEEEE
T ss_pred HHHh---cccHHHHHHHHHHHhCcCchhhhhcCCee-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence 7643 3445566677788998532 23456666 9999999999999999999999999999999999988887777
Q ss_pred cCeeEEEEecccccCCCCCCeEEEEeecCeEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001977 878 GKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAA 957 (987)
Q Consensus 878 ~k~gY~IeVp~~~~~kvP~~~~~~ss~kg~~rf~tpel~eL~~el~~~~~~~~~~~~~il~~L~~~~~~~~~~l~~~~~~ 957 (987)
+..||+|+|+.+..+++|++|++.++++|.+||+||+++++++++.++++++..++.+++.+|.+.+.+|.+.|..++++
T Consensus 469 ~~~gy~i~V~~~~~~~vp~~~i~~~s~~~~~~f~tp~l~~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~ 548 (800)
T 1wb9_A 469 AVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASA 548 (800)
T ss_dssp TTTEEEEEEEHHHHTTSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred CcceEEEEEeccccccCCcceEEeeeccCCCEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccchhhhhhcccCCceecccC
Q 001977 958 TAGLTLILLDGSLLHAFLILQSNSCSSEMN 987 (987)
Q Consensus 958 iAeLD~L~Sla~l~kA~~A~~~~yvRP~in 987 (987)
||+|||++|+ |.+|...+||||+|+
T Consensus 549 la~lD~l~s~-----A~~a~~~~~~~P~~~ 573 (800)
T 1wb9_A 549 LAELDVLVNL-----AERAYTLNYTCPTFI 573 (800)
T ss_dssp HHHHHHHHHH-----HHHHHHTTCBCCEEC
T ss_pred HHHHHHHHHH-----HHHHHhCCCcccEEC
Confidence 9999999998 888899999999984
No 4
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=6.4e-90 Score=845.47 Aligned_cols=529 Identities=25% Similarity=0.324 Sum_probs=441.5
Q ss_pred CCCHHHHHHHHHHhhCCCeEEEEeeCCeEEEechhHHHHHHhccceeccC-----CCCccccCcccHHHHHHHHHHcCCe
Q 001977 326 NLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-----EQPHCGFPERNFSMNVEKLARKGYR 400 (987)
Q Consensus 326 ~~TP~~~Qyw~iK~~~~D~Vlffk~GkFYEly~~DA~i~~~~L~l~~~~~-----~~~~~GfPe~s~~~~~~~Lv~~Gyk 400 (987)
++||||+|||+||++|||+|||||||+|||||++||+++|++|||++|++ .+||||||+|+++.|+++||++|||
T Consensus 12 ~~tp~~~qy~~iK~~~~d~~l~~r~GdFYE~f~~DA~~~~~~L~i~lt~r~~~~~~~pm~GvP~~~~~~y~~~Lv~~G~k 91 (765)
T 1ewq_A 12 PLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRAFEAYAERLLKMGFR 91 (765)
T ss_dssp CCCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEEECSSCEEEEEEEEGGGHHHHHHHHHHTTCC
T ss_pred CCChHHHHHHHHHHHCCCEEEEEecCceeEEcHHHHHHHHHHhCcEEeccCCCCCCCceecCcHHHHHHHHHHHHHCCCE
Confidence 78999999999999999999999999999999999999999999999975 4799999999999999999999999
Q ss_pred EEEEeccCChHHHHHhhhhcCCCCCeeEEEEEEEEecCccccccccCCCCCCcEEEEEEecCCCCCCCCCCCEEEEEEEe
Q 001977 401 VLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVD 480 (987)
Q Consensus 401 VavveQ~Et~~~~~~R~k~~g~k~kvv~Rev~~V~TpGTl~d~~~l~~~~~~~yLlaI~e~~~~~~~~~~~~~~Gva~vD 480 (987)
||||||+|+|... | ++|+|+||+|+||||+++++++ . ..++||+||+ . ...||+||+|
T Consensus 92 Vai~eQ~e~~~~~---------k-g~v~R~v~~v~TpGT~~~~~~l-~-~~~n~l~ai~-~---------~~~~Gla~~D 149 (765)
T 1ewq_A 92 LAVADQVEPAEEA---------E-GLVRREVTQLLTPGTLLQESLL-P-REANYLAAIA-T---------GDGWGLAFLD 149 (765)
T ss_dssp EEEEEECSCGGGC---------S-SSCCEEEEEEECGGGCCCGGGS-C-SSCCCEEEEE-E---------SSSEEEEEEE
T ss_pred EEEEecCCCcccc---------c-CceeEEEEEEEcCceecchhhc-C-CCCcEEEEEE-e---------CCEEEEEEEE
Confidence 9999999999742 1 5999999999999999999988 3 4789999998 2 1359999999
Q ss_pred CCCCeEEEEEEcCcchHHHHHHHHHhcCCcEEEecCCCCChHHHHHHHhhcCCCccccccCCccccChhhhHHHHHHHHh
Q 001977 481 VATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYN 560 (987)
Q Consensus 481 ~sTG~f~l~qf~Dd~~~s~L~tlL~~~~P~EIl~~~~~ls~~t~~~l~~~~~~~~~~~l~p~~~f~d~~~~~~~l~~~~~ 560 (987)
++||+|++++|.|+ ++|.++|.+++|+|||++.+. + . +.. .+..+...|.
T Consensus 150 ~stg~~~~~~~~d~---~~l~~~l~~~~P~Eil~~~~~-~----~-~~~---------------------~~~~~~~~f~ 199 (765)
T 1ewq_A 150 VSTGEFKGTVLKSK---SALYDELFRHRPAEVLLAPEL-L----E-NGA---------------------FLDEFRKRFP 199 (765)
T ss_dssp TTTTEEEEEEESSH---HHHHHHHHHHCCSEEEECHHH-H----H-CHH---------------------HHHHHHHHCC
T ss_pred CCCCEEEEEEecCH---HHHHHHHHhcCCeEEEecCCh-H----H-HHH---------------------HhhhcccccC
Confidence 99999999999875 799999999999999998531 0 0 100 0001111111
Q ss_pred hhccccccccccccccccccCCCCCCcchhhhhhhccCCCchHHHHHHHHHHHHHHHhcchhhhhcccccccccCCCccc
Q 001977 561 RITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGD 640 (987)
Q Consensus 561 ~~~~~~~~k~d~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~lal~AlgalL~YL~~~~ld~~ll~~~~f~~~~~~~~~~ 640 (987)
. ..+ ...++.. .+ .. .++++|+|+||+||+.++... +. .. .+..
T Consensus 200 ~---~~l-----------~~~~~~~-------~~----~~-~~~~~a~g~ll~Yl~~~~~~~-~~-~~--------~~~~ 243 (765)
T 1ewq_A 200 V---MLS-----------EAPFEPE-------GE----GP-LALRRARGALLAYAQRTQGGA-LS-LQ--------PFRF 243 (765)
T ss_dssp S---EEE-----------CCCCCCC-------SS----SC-HHHHHHHHHHHHHHHHHHTSC-CC-CC--------CCEE
T ss_pred H---HHH-----------HHHhccc-------cc----CC-HHHHHHHHHHHHHHHHhhhcc-cc-cC--------CcEE
Confidence 0 000 0011110 00 12 678999999999999987542 21 22 2344
Q ss_pred cCCCCeeecCHHHHHhccCcccCCCCCCcchhhhhhhccCChHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHcCChHHH
Q 001977 641 MAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFA 720 (987)
Q Consensus 641 ~~~~~~M~LD~~TL~nLEI~~n~~~g~~~gSL~~lLn~c~T~~GkRLLr~WL~~PL~d~~~I~~RldaVe~L~~~n~~l~ 720 (987)
+...++|.||.+|+++|||++|.+ | +||||++||+|+|+||+|+|++||++||+|.++|++|||+|++|+. +..++
T Consensus 244 ~~~~~~m~lD~~t~~~LEl~~~~~-~--~gsL~~~ld~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~-~~~~~ 319 (765)
T 1ewq_A 244 YDPGAFMRLPEATLRALEVFEPLR-G--QDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVR-EGALR 319 (765)
T ss_dssp CCGGGSCBCCHHHHHHTTSSSCSS-S--CCCHHHHHCCCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHH-CHHHH
T ss_pred ECCCCeEEecHHHHHhCcCccCCC-c--cchHHHHhCCCCCHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHh-CHHHH
Confidence 566789999999999999999875 4 7999999999999999999999999999999999999999999997 56788
Q ss_pred HHHHHhcCCCCCHHHHHHHHhcCccccCcCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcChHHHHHh
Q 001977 721 LEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHI 800 (987)
Q Consensus 721 ~~lr~~Lk~lpDLERll~Ri~~~~~~~~r~~~~~ilye~~~~~~L~~~~~~L~~~~~i~~~~~~l~~~l~~~~s~lL~~l 800 (987)
..++..|++++|++|++.|+..+. + .+++|..+..+|..+..+.+.+. +
T Consensus 320 ~~l~~~L~~~~Dler~l~r~~~~~-~--------------~~~dl~~l~~~l~~~~~l~~~l~----------------l 368 (765)
T 1ewq_A 320 EGVRRLLYRLADLERLATRLELGR-A--------------SPKDLGALRRSLQILPELRALLG----------------E 368 (765)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHTTC-C--------------CHHHHHHHHHHHHHHHHHHHHHC----------------T
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCC-C--------------CHHHHHHHHHHHHHHHHHHHHHH----------------H
Confidence 899999999999999999998642 2 24678888888877766654321 1
Q ss_pred hcCCCCchhHHHHHHHHHhhcchhh--hcCCCCeeeCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEEc
Q 001977 801 LTPGKGLPAIVSILKHFKDAFDWVE--ANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIG 878 (987)
Q Consensus 801 ~~~~~~lp~l~~ll~~i~~~iD~~~--a~~~g~iipk~G~d~eLD~lr~~i~~ie~~L~~~l~~~~k~l~~~~iky~~~~ 878 (987)
.. .++.+.++.+.|.++|+... ...+|++| ++|+|++||++|+.++++++.|.++.+++++.++++.+++...+
T Consensus 369 ~~---~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i-~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~i~~~~ 444 (765)
T 1ewq_A 369 EV---GLPDLSPLKEELEAALVEDPPLKVSEGGLI-REGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYNA 444 (765)
T ss_dssp TS---CCCCCHHHHHHHHHHBCSSCCSCTTSSCCB-CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEET
T ss_pred Hh---ccccHHHHHHHHHHHhcccchhhhccCCcc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEecc
Confidence 11 23344556666778887532 23456666 99999999999999999999999999999999998888877777
Q ss_pred CeeEEEEecccccCCCCCCeEEEEeecCeEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001977 879 KDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAAT 958 (987)
Q Consensus 879 k~gY~IeVp~~~~~kvP~~~~~~ss~kg~~rf~tpel~eL~~el~~~~~~~~~~~~~il~~L~~~~~~~~~~l~~~~~~i 958 (987)
..||+|+|+.+..+++|++|++.++.+|.+||+||+++++++++.++++++..++.+++.+|++.+..+...|..+.+++
T Consensus 445 ~~gy~i~v~~~~~~~vp~~~i~~~s~~~~~rf~tp~l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~l 524 (765)
T 1ewq_A 445 VFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARIL 524 (765)
T ss_dssp TTEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred ceeEEEEeehHhhhcCCcceEEEEeccCCcEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccchhhhhhcccCCceeccc
Q 001977 959 AGLTLILLDGSLLHAFLILQSNSCSSEM 986 (987)
Q Consensus 959 AeLD~L~Sla~l~kA~~A~~~~yvRP~i 986 (987)
|+|||++|+ |.+|...+||||+|
T Consensus 525 a~LD~l~s~-----a~~a~~~~~~~P~~ 547 (765)
T 1ewq_A 525 AELDVYAAL-----AEVAVRYGYVRPRF 547 (765)
T ss_dssp HHHHHHHHH-----HHHHHHHTCBCCEE
T ss_pred HHHHHHHhh-----HHHHHhCCceeecc
Confidence 999999998 77788889999986
No 5
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=3.1e-81 Score=780.50 Aligned_cols=584 Identities=18% Similarity=0.229 Sum_probs=447.8
Q ss_pred CCCHHHHHHHHHHhhCCCeEEEEeeCCeEEEechhHHHHHHhcccee-----ccC----CCCccccCcccHHHHHHH-HH
Q 001977 326 NLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQY-----MKG----EQPHCGFPERNFSMNVEK-LA 395 (987)
Q Consensus 326 ~~TP~~~Qyw~iK~~~~D~Vlffk~GkFYEly~~DA~i~~~~L~l~~-----~~~----~~~~~GfPe~s~~~~~~~-Lv 395 (987)
+.||||+|||+||++|+|||+||++|+|||+|++||+++|++|+++. +++ ++|+|+||.+.|+.|+++ |+
T Consensus 15 ~~~~f~~~y~~Lk~k~~dtv~~F~~GdfYe~~~~DA~~vA~~l~~t~~~~k~~~~~~~~~~~~v~i~~~~~~~~l~~~Ll 94 (934)
T 3thx_A 15 AEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVKDLLL 94 (934)
T ss_dssp HHHHHHHHHHTSCCCCTTEEEEEECSSEEEEETHHHHHHHHHTTSSSTTCEEESSSSCCCEEEEEEEHHHHHHHHHHHHH
T ss_pred cccHHHHHHHhccccCCCeEEEEEcCCeeeeehhhHHHHHHHHhhhhhhhhccCCCCCCCCCeeeeCHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999754 333 468999999999999997 99
Q ss_pred HcCCeEEEEeccCChHHHHHhhhhcCCCCCeeEEEEEEEEecCccccc-cccCCCC---CCcEEEEEEecCCCCCCCCCC
Q 001977 396 RKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEG-ELLSANP---DASYLMALTESNQSPASQSTD 471 (987)
Q Consensus 396 ~~GykVavveQ~Et~~~~~~R~k~~g~k~kvv~Rev~~V~TpGTl~d~-~~l~~~~---~~~yLlaI~e~~~~~~~~~~~ 471 (987)
++||||+||||.+++.. .+.++|+|++++||||+++. ++|..+. .++||+||++... +..
T Consensus 95 ~~g~rVei~~q~~~~~~-----------~~~~~r~l~~~~TPGnl~~~ed~L~~~~d~~~~~~l~AIk~~~~-----~~~ 158 (934)
T 3thx_A 95 VRQYRVEVYKNRAGNKA-----------SKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAV-----DGQ 158 (934)
T ss_dssp TTCCEEEEEEECC---------------CCCCCEEEEEEEBTTBCTTCHHHHC--------CCEEEEEECCS-----SSS
T ss_pred HcCCEEEEEecCCcccc-----------cCccceEEEEEECCCcHHHHHHHhhccccccccceEEEEEEeec-----CCC
Confidence 99999999999776531 24689999999999999985 3443222 2689999998532 245
Q ss_pred CEEEEEEEeCCCCeEEEEEEcCcchHHHHHHHHHhcCCcEEEecCCCCChHHHHH--HHhhcCCCccccccCCccccChh
Q 001977 472 RCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERA--ILRHTRNPLVNDLVPLSEFWDAE 549 (987)
Q Consensus 472 ~~~Gva~vD~sTG~f~l~qf~Dd~~~s~L~tlL~~~~P~EIl~~~~~ls~~t~~~--l~~~~~~~~~~~l~p~~~f~d~~ 549 (987)
..|||||+|++||+|.+++|.|+..|++|.++|.+++|+|||++.+..+....++ +.... ...+. ..+. .+|+..
T Consensus 159 ~~~Gla~~D~stge~~~~~~~d~~~~~~l~~~l~~~~P~Eil~~~~~~~~~~~~l~~~~~~~-~~~~~-~~~~-~~f~~~ 235 (934)
T 3thx_A 159 RQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRG-GILIT-ERKK-ADFSTK 235 (934)
T ss_dssp CEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHHHHH-TCEEE-EECG-GGGCCS
T ss_pred cEEEEEEEECCCCeEEEEecCCchHHHHHHHHHHhCCCeEEEeeCCCCcccHHHHHHHHhhc-CceEE-ecch-hhcCHH
Confidence 7899999999999999999999999999999999999999999987655333221 11111 11122 2232 356666
Q ss_pred hhHHHHHHHHhhhccccccccccccccccccCCCCCCcchhhhhhhccCCCchHHHHHHHHHHHHHHHhcchhhhhcccc
Q 001977 550 TTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAK 629 (987)
Q Consensus 550 ~~~~~l~~~~~~~~~~~~~k~d~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~lal~AlgalL~YL~~~~ld~~ll~~~~ 629 (987)
.+.+.+.+++.......+ ....++. .+.+++++|+|+||+||+.++... .
T Consensus 236 ~~~~~l~~~~~~~~~~~~---------------~~~~~~~---------~~~~~~~~a~gall~Yl~~~~~~~-~----- 285 (934)
T 3thx_A 236 DIYQDLNRLLKGKKGEQM---------------NSAVLPE---------MENQVAVSSLSAVIKFLELLSDDS-N----- 285 (934)
T ss_dssp SHHHHHHHHBCCCTTSCC---------------CGGGCGG---------GGCHHHHHHHHHHHHHHTGGGCGG-G-----
T ss_pred HHHHHHHHHhcccccccc---------------ccccccc---------cccHHHHHHHHHHHHHHHHhcCcc-c-----
Confidence 677777766542211000 0012221 124689999999999999876531 1
Q ss_pred cccccCCCccccCCCCeeecCHHHHHhccCcccCCCCC-CcchhhhhhhccCChHHHHHHHHHhhCcCCCHHHHHHHHHH
Q 001977 630 FELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGD-SSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDA 708 (987)
Q Consensus 630 f~~~~~~~~~~~~~~~~M~LD~~TL~nLEI~~n~~~g~-~~gSL~~lLn~c~T~~GkRLLr~WL~~PL~d~~~I~~Rlda 708 (987)
+..+ .+..+...++|+||++|++||||++|.++++ ..||||++||+|+|+||+||||+||++||+|++.|++|||+
T Consensus 286 ~~~~---~~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~~~SL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~ 362 (934)
T 3thx_A 286 FGQF---ELTTFDFSQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNL 362 (934)
T ss_dssp TTCB---EEEECCGGGBCEECHHHHHHTTSCC---------CCHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHH
T ss_pred cccc---cceEEcCCCeEEeCHHHHhhccccccCCCCCCCCCcHHHHhccCCCHHHHHHHHHHHhCcCCCHHHHHHHHHH
Confidence 1111 1234556789999999999999999987644 47899999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHH-hcCCCCCHHHHHHHHhcCccccCcCCcchhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001977 709 VAGLRGVNQPFALEFRK-ALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGA 787 (987)
Q Consensus 709 Ve~L~~~n~~l~~~lr~-~Lk~lpDLERll~Ri~~~~~~~~r~~~~~ilye~~~~~~L~~~~~~L~~~~~i~~~~~~l~~ 787 (987)
|++|++ +..++..++. .|+++|||||+++|++.+. + .+++|..++.+|..+..+.+.+....
T Consensus 363 Ve~l~~-~~~~~~~l~~~~L~~i~DleRl~~ri~~~~-~--------------~~~dl~~l~~~l~~~~~l~~~l~~~~- 425 (934)
T 3thx_A 363 VEAFVE-DAELRQTLQEDLLRRFPDLNRLAKKFQRQA-A--------------NLQDCYRLYQGINQLPNVIQALEKHE- 425 (934)
T ss_dssp HHHHHS-CHHHHHHHHTTTGGGCCCHHHHHHHHHTTC-C--------------CHHHHHHHHHHHTTHHHHHHHHHHTC-
T ss_pred HHHHhh-ChHHHHHHHHHHhcCCCCHHHHHHHHhcCC-C--------------CHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 999997 6778889997 6999999999999998643 2 24688888999988888776654321
Q ss_pred HhhhcChHHHHHh-hcC-CCCchhHHHHHHHHHhhcchhhhcCCCCeeeCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001977 788 ILENTESRQLHHI-LTP-GKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRK 865 (987)
Q Consensus 788 ~l~~~~s~lL~~l-~~~-~~~lp~l~~ll~~i~~~iD~~~a~~~g~iipk~G~d~eLD~lr~~i~~ie~~L~~~l~~~~k 865 (987)
...+++|..+ +.+ ...++++..+.+.|+.+||.... ++|.+++++|+|++||++|+.+++++++|.++++++++
T Consensus 426 ---~~~~~~l~~~~~~~l~~~~~~l~~~~~~i~~~i~~~~~-~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~ 501 (934)
T 3thx_A 426 ---GKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQV-ENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAAR 501 (934)
T ss_dssp ---CSSSTTGGGGTHHHHHHHHHHHHHHHHHHHTTBCTTGG-GTTCCCBCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cccchHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcchh-hcCCceeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0002222211 000 00134566677778889986543 46645559999999999999999999999999999999
Q ss_pred HhCC---CCeeEEEEcCeeEEEEecccccCC--CCCCeEEEEeecCeEEEEChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001977 866 LLGD---TSITYVTIGKDLYLLEVPESLRGS--VPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRL 940 (987)
Q Consensus 866 ~l~~---~~iky~~~~k~gY~IeVp~~~~~k--vP~~~~~~ss~kg~~rf~tpel~eL~~el~~~~~~~~~~~~~il~~L 940 (987)
.++. +++++...+..||+|+|+...... .|.+|++.+++++..||+|+++++|++++.++++++.+++.+|+++|
T Consensus 502 ~~~~~~~~~lk~~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~~rf~t~el~~l~~~~~~~~~~~~~~e~~i~~~l 581 (934)
T 3thx_A 502 DLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEI 581 (934)
T ss_dssp HSCCCBTTTBEEEECC--CEEEEECHHHHTTTTTCSSCEEEEEC--CEEEECTTHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HhCCCccceEEEEEeccceEEEEEEechhhccCCCCCcEEEEcccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887 467766666789999999764333 36789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhhhccc--CCceecccC
Q 001977 941 IGQFCEHHNKWRQMVAATAGLTLILLDGSLLHAFLILQ--SNSCSSEMN 987 (987)
Q Consensus 941 ~~~~~~~~~~l~~~~~~iAeLD~L~Sla~l~kA~~A~~--~~yvRP~in 987 (987)
++.+.+|.+.|..++++||+||||+|| |.+|.. .+||||+|+
T Consensus 582 ~~~~~~~~~~l~~~~~~la~lD~l~s~-----A~~a~~~~~~~~rP~~~ 625 (934)
T 3thx_A 582 VNISSGYVEPMQTLNDVLAQLDAVVSF-----AHVSNGAPVPYVRPAIL 625 (934)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHH-----HHHHHTSSSCCBCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhccCCCcCCeec
Confidence 999999999999999999999999998 666665 899999873
No 6
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.37 E-value=0.00061 Score=55.60 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=40.9
Q ss_pred cccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeee
Q 001977 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLD 148 (987)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~ 148 (987)
.||-.|.-.||.|+.||+++|++++..+.-+.|.|-||.+|.|.
T Consensus 14 ~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e~L~ 57 (68)
T 2dig_A 14 ADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELELK 57 (68)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEEEec
Confidence 48999999999999999999999999999999999989888774
No 7
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.34 E-value=0.00037 Score=56.71 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=41.0
Q ss_pred cccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeee
Q 001977 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLD 148 (987)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~ 148 (987)
.||-.|.-.||.|+.||+++|++++..+.-+.|.|-||.+|.|.
T Consensus 11 ~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e~L~ 54 (66)
T 2l8d_A 11 ADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTELALK 54 (66)
T ss_dssp CSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEEeec
Confidence 48899999999999999999999999999999999989998874
No 8
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=97.26 E-value=0.00033 Score=64.38 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=40.3
Q ss_pred cCCccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeee
Q 001977 101 YGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLD 148 (987)
Q Consensus 101 ~~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~ 148 (987)
.+.+++|.||-.-|++|.-||.|+|++ +...++++|.+|||++-.|.
T Consensus 2 ~~~~~~G~rV~AkWsdn~~yYpG~V~~-~~~~~ky~V~FdDg~~~~v~ 48 (123)
T 2g3r_A 2 HMNSFVGLRVVAKWSSNGYFYSGKITR-DVGAGKYKLLFDDGYECDVL 48 (123)
T ss_dssp ---CCTTCEEEEECTTTCCEEEEEEEE-EEETTEEEEEETTSCEEEEE
T ss_pred CCccccceEEEEEeccCCcCcccEEEE-eccCCeEEEEEcCCCeeEee
Confidence 467899999999999888999999999 47788999999999988764
No 9
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=97.18 E-value=0.00061 Score=56.98 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=41.5
Q ss_pred CccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeeecC
Q 001977 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (987)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (987)
..-||-+|---| .|..||.|+|++.+.. +...|.|+||..|.|...
T Consensus 6 ~~~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~etvk~~ 51 (67)
T 3p8d_A 6 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 51 (67)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG
T ss_pred ccccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceEEEeHH
Confidence 456999999999 9999999999999998 679999999999988654
No 10
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.15 E-value=0.00076 Score=57.87 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=43.3
Q ss_pred CCccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeeecCcceEEEE
Q 001977 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWV 157 (987)
Q Consensus 102 ~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~~e~~~~~ 157 (987)
...-||.+|.-.|. |+.||.|+|++.+.. +...|.|+||..|.|... +++-+
T Consensus 8 ~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dyn~e~v~~~--~lrpl 59 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDGVIRCLKRM--HIKAM 59 (74)
T ss_dssp CCCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTSCEEEECGG--GEECC
T ss_pred CCCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecCCeEEecHH--HCeeC
Confidence 45569999999999 999999999999876 789999999988887544 44444
No 11
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=97.08 E-value=0.00087 Score=55.03 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=42.4
Q ss_pred ccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccC-CCceeeecC
Q 001977 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDLG 150 (987)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~l~l~ 150 (987)
.-+|..|-..|..|+.||.|+|++.+...+...|.|.| |..|.+.++
T Consensus 4 ~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~ 51 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLS 51 (59)
T ss_dssp CCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHH
Confidence 34899999999999999999999999888999999977 999988775
No 12
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=96.98 E-value=0.0012 Score=55.21 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=42.6
Q ss_pred CccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccC-CCceeeecC
Q 001977 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDLG 150 (987)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~l~l~ 150 (987)
..-||..|...|..|+.||.++|.+.+...+...|.|.| |..|.+.+.
T Consensus 8 ~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~ 56 (64)
T 4a4f_A 8 SWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL 56 (64)
T ss_dssp CCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHH
Confidence 345999999999999999999999999988999999955 899988765
No 13
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=96.96 E-value=0.0013 Score=52.89 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=39.9
Q ss_pred cccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccC-CCceeeecCc
Q 001977 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDLGK 151 (987)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~l~l~~ 151 (987)
-+|..|-..|..|+.||.|+|.+.+...+...|.|.| |..|.+.++.
T Consensus 3 k~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~ 50 (54)
T 3s6w_A 3 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSN 50 (54)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGG
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHH
Confidence 3799999999999999999999999888889999955 9999987753
No 14
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=96.95 E-value=0.0014 Score=57.20 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=41.7
Q ss_pred cCCccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeeecC
Q 001977 101 YGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (987)
Q Consensus 101 ~~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (987)
.....||.+|---| .|..||.|+|++.+.. +.+.|.|+||..|.|...
T Consensus 19 ~~~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~etvk~~ 66 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 66 (85)
T ss_dssp --CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG
T ss_pred CcccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeEEecHH
Confidence 44567999999999 9999999999999998 679999999999988654
No 15
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=96.73 E-value=0.0028 Score=52.25 Aligned_cols=47 Identities=13% Similarity=0.245 Sum_probs=42.9
Q ss_pred CccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeeecC
Q 001977 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (987)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (987)
.--||..|...| .|..||.|+|++-|...+...|+|.||.+-|+...
T Consensus 13 ~f~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~k 59 (66)
T 2eqj_A 13 KFEEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWK 59 (66)
T ss_dssp CSCTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred cccCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEee
Confidence 344999999999 99999999999999999999999999999888654
No 16
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=96.62 E-value=0.0089 Score=50.25 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=40.2
Q ss_pred cccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeeecC
Q 001977 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (987)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (987)
-+|..|=+.|- |..||.|+|+..|....+..|+++||.+-|....
T Consensus 28 ~eGeDVLarws-DGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~k 72 (79)
T 2m0o_A 28 WEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 72 (79)
T ss_dssp CTTCEEEBCCT-TSCCCEEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ccCCEEEEEec-CCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEee
Confidence 47888888896 7889999999999999999999999999998654
No 17
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.60 E-value=0.0037 Score=55.49 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=43.0
Q ss_pred CccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEcc-CCCceeeecCc
Q 001977 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYD-DGEDELLDLGK 151 (987)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yd-dg~~e~l~l~~ 151 (987)
..-||..|...|..|+.||.|+|++.+...+...|.|. =|..|.|.+..
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~ 59 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSD 59 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHH
Confidence 35589999999999999999999999998889999995 58899887663
No 18
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.59 E-value=0.00035 Score=60.66 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=39.5
Q ss_pred ccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeeecC
Q 001977 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (987)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (987)
.-||.+|--.|. |+.||.|+|++.+.. +...|.|+||..|.|.+.
T Consensus 7 ~kvGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DGn~E~V~~s 51 (81)
T 2ldm_A 7 FQINEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 51 (81)
Confidence 348999999999 999999999999864 579999988999988765
No 19
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=96.47 E-value=0.0037 Score=60.02 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=42.1
Q ss_pred ccCCccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeeecC
Q 001977 100 SYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (987)
Q Consensus 100 ~~~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (987)
..|..+||.||--.|.+++-||.|+|+.+ ...+++.|.+|||.+-.|...
T Consensus 5 ~~~~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k~v~~~ 54 (156)
T 1ssf_A 5 SSGNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVLGK 54 (156)
T ss_dssp ---CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEEEEETT
T ss_pred CCCcchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCeeEeecc
Confidence 34677999999999999999999999996 666789999999999887544
No 20
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=96.26 E-value=0.0066 Score=52.71 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=42.0
Q ss_pred ccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccC-CCceeeecC
Q 001977 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDLG 150 (987)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~l~l~ 150 (987)
.-+|..|-..|..|+.||.++|++.+...++..|.|-| |..|.+.+.
T Consensus 10 ~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~ 57 (78)
T 2d9t_A 10 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLS 57 (78)
T ss_dssp CCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGG
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHH
Confidence 45899999999999999999999999877899999955 999998765
No 21
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=96.02 E-value=0.012 Score=51.04 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=42.4
Q ss_pred CccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEcc-CCCceeeecC
Q 001977 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYD-DGEDELLDLG 150 (987)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yd-dg~~e~l~l~ 150 (987)
..-+|..|-..|..|+.||.|+|++.+...+...|.|- =|..|.+.+.
T Consensus 17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~ 65 (77)
T 3pnw_C 17 MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLS 65 (77)
T ss_dssp TCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGG
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHH
Confidence 34599999999999999999999999988888999995 4999988765
No 22
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=95.22 E-value=0.045 Score=43.78 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=39.9
Q ss_pred ccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeeecC
Q 001977 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (987)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (987)
+|..|=+.|-+ ..||.|+|+..|....+..|+++||.+-|+.+.
T Consensus 6 ~GedVLarwsD-G~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~k 49 (58)
T 4hcz_A 6 EGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 49 (58)
T ss_dssp TTCEEEEECTT-SCEEEEEEEEEETTTTEEEEEETTSCEEEEEGG
T ss_pred cCCEEEEEecC-CCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhH
Confidence 68889999975 889999999999999999999999999888654
No 23
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=94.36 E-value=0.13 Score=42.51 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=36.7
Q ss_pred ccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeeecC
Q 001977 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (987)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (987)
--+|.+|=+.|-+ ..||-|+|+. ....+..|+++|--+-|+.+.
T Consensus 16 ~~~geDVL~rw~D-G~fYLGtIVd--~~~~~ClV~FeD~S~~Wv~~k 59 (69)
T 2xk0_A 16 YALQEDVFIKCND-GRFYLGTIID--QTSDQYLIRFDDQSEQWCEPD 59 (69)
T ss_dssp CCTTCEEEEECTT-SCEEEEEEEE--ECSSCEEEEETTCCEEEECTT
T ss_pred cccCCeEEEEecC-CCEEEEEEEe--cCCceEEEEecCCcceeeeHH
Confidence 3478888899975 8899999955 668899999999998888664
No 24
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=94.36 E-value=0.063 Score=48.13 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=39.7
Q ss_pred ccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEc-cCCCceeeecC
Q 001977 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (987)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~ 150 (987)
.-+|.-|-+.|+.|+.||.|.|.+... ++...|.| |=|..|.+.+.
T Consensus 28 ~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~e~v~~~ 74 (94)
T 3fdr_A 28 VHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLK 74 (94)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGG
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCeEEEEHH
Confidence 458999999999999999999999974 46788888 88999998765
No 25
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.32 E-value=0.069 Score=46.58 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=43.3
Q ss_pred cccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeeecCc
Q 001977 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGK 151 (987)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~~ 151 (987)
=+|.-|.+..++|+.||.|.|..-++.++-|.+.||=|.+|.+...+
T Consensus 23 k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~~V~~~~ 69 (85)
T 2eqk_A 23 ENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVELVVNVDC 69 (85)
T ss_dssp CSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEEEEETTT
T ss_pred cCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEEEEEccc
Confidence 38889999999999999999999999999999999999999998663
No 26
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=92.95 E-value=0.09 Score=48.58 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=39.8
Q ss_pred ccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEc-cCCCceeeecC
Q 001977 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (987)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~ 150 (987)
.-+|.-|-+.|..|+.||.|.|++.+.. +...|.| |=|..|.+.+.
T Consensus 33 ~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~e~v~~~ 79 (110)
T 2diq_A 33 VHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLK 79 (110)
T ss_dssp CCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCEEEECGG
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCeEEEehH
Confidence 3489999999999999999999999864 5678888 88999998775
No 27
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.25 E-value=0.34 Score=39.16 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=40.3
Q ss_pred cccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeeecC
Q 001977 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (987)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (987)
-+|..|=..|- |..||.|+|+..|....+..|.+.|+-+-|+...
T Consensus 9 ~eGqdVLarWs-DGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~~k 53 (63)
T 2e5q_A 9 TEGQYVLCRWT-DGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWK 53 (63)
T ss_dssp CTTCEEEEECT-TSCEEEEEECCCCSTTSEEEEEETTSCEEEEEGG
T ss_pred ecCCEEEEEec-CCCEEEEEEEEEecCCCEEEEEEccCceeEEEee
Confidence 38999999996 7889999999999999999999999999888654
No 28
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.98 E-value=0.52 Score=38.69 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=40.9
Q ss_pred ccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeeecC
Q 001977 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (987)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (987)
=-+|..|=..|-+ ..||.|+|+.-|.......|.+.|+.+-|+...
T Consensus 10 f~eGqdVLarWsD-GlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~k 55 (68)
T 2e5p_A 10 LWEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 55 (68)
T ss_dssp CCTTCEEEEECTT-SSEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred cccCCEEEEEecC-CcEEEeEEEEEecCCcEEEEEEccCCeeeeeee
Confidence 3489999999975 889999999999999999999999999888654
No 29
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=88.70 E-value=0.57 Score=48.23 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=38.5
Q ss_pred cccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEc-cCCCceeeecC
Q 001977 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (987)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~ 150 (987)
-+|.-|-+.|..|+.||.|.|++... +...|.| |.|..|.+.++
T Consensus 53 ~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~ 97 (218)
T 2wac_A 53 KRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNKETLPTN 97 (218)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGG
T ss_pred CcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCeEEEchH
Confidence 38999999999999999999999977 7788988 66999998654
No 30
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=86.92 E-value=1.2 Score=41.99 Aligned_cols=37 Identities=14% Similarity=0.363 Sum_probs=30.0
Q ss_pred cccceEEEEcCCCC----ceEEEEEEeeeCCCCeEEEEccCCC
Q 001977 105 VLRKRIRVYWPLDK----AWYEGCVKSFDKECNKHLVQYDDGE 143 (987)
Q Consensus 105 ~vg~rv~v~wp~d~----~~y~g~v~~~~~~~~~h~v~Yddg~ 143 (987)
-+|..|.|||..+. .||.|+|+... ...|.|.|++=+
T Consensus 62 ~~gd~VEV~~~~~d~ep~gWw~a~I~~~k--g~f~~V~y~~~~ 102 (128)
T 3h8z_A 62 TEGDEVEVYSRANEQEPCGWWLARVRMMK--GDFYVIEYAACD 102 (128)
T ss_dssp CTTCEEEEEECC---CCCEEEEEEEEEEE--TTEEEEEETTC-
T ss_pred CCCCEEEEEecCCCCCcCccEEEEEEEee--CCEEEEEEcCCC
Confidence 49999999999877 89999999976 468999998744
No 31
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=86.59 E-value=0.74 Score=45.76 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=40.8
Q ss_pred CccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEc-cCCCceeeecCcceEEEE
Q 001977 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLGKEKIEWV 157 (987)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~~e~~~~~ 157 (987)
..-+|.-|-+.|+.|+.||.|.|.+.++.. ...|.| |=|..|.+ .+++-+
T Consensus 47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~v----~~lr~l 97 (169)
T 3ntk_A 47 DLKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAVT----QQFRQL 97 (169)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEEE----SCEECC
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEEh----hhhhcc
Confidence 345899999999999999999999998754 788888 78988873 455555
No 32
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=86.12 E-value=1.5 Score=41.74 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=31.6
Q ss_pred cccceEEEEcCCCCceEEEEEEeeeC----CCCeEEEEccCCCc
Q 001977 105 VLRKRIRVYWPLDKAWYEGCVKSFDK----ECNKHLVQYDDGED 144 (987)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~----~~~~h~v~Yddg~~ 144 (987)
.||.+|.|||+ |..||.+.|..... ...++.|.|.+=..
T Consensus 14 ~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNk 56 (133)
T 1wgs_A 14 EIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVGFNR 56 (133)
T ss_dssp CTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTTTCS
T ss_pred CCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccCcCC
Confidence 49999999998 78999999998664 33478999986443
No 33
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=85.28 E-value=1.2 Score=46.47 Aligned_cols=44 Identities=20% Similarity=0.364 Sum_probs=38.1
Q ss_pred ccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEc-cCCCceeeecC
Q 001977 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (987)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~ 150 (987)
+|.-|-+.++.|+.||.|.|++..+. +...|.| |=|..|.+.+.
T Consensus 68 ~G~~c~a~~~~d~~WyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~ 112 (226)
T 4b9x_A 68 IGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTD 112 (226)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEECSS-SEEEEECTTTCCEEEEEGG
T ss_pred CCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEecCCEEEEEHH
Confidence 78889999999999999999998754 5688888 88999988654
No 34
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=83.09 E-value=1.4 Score=44.81 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=40.8
Q ss_pred CCccccceEEEEcCCCC--ceEEEEEEeeeCCCC--eEEEEccCCCceeeecCc
Q 001977 102 GEDVLRKRIRVYWPLDK--AWYEGCVKSFDKECN--KHLVQYDDGEDELLDLGK 151 (987)
Q Consensus 102 ~~~~vg~rv~v~wp~d~--~~y~g~v~~~~~~~~--~h~v~Yddg~~e~l~l~~ 151 (987)
+.-.||.||-..|.+.. .||.|.|..-..... ++.|-||||...++.+..
T Consensus 67 ~~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~Yv~~~~ 120 (213)
T 3dlm_A 67 DKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSE 120 (213)
T ss_dssp GGCCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSCEEEECGGG
T ss_pred cEEeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCCcceecCce
Confidence 44559999999999765 899999998665433 899999999998887753
No 35
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=82.30 E-value=4.5 Score=35.95 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=31.3
Q ss_pred cccceEEEEcCCCCceEEEEEEeeeCCC--CeEEEEccCCC
Q 001977 105 VLRKRIRVYWPLDKAWYEGCVKSFDKEC--NKHLVQYDDGE 143 (987)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~--~~h~v~Yddg~ 143 (987)
.||.+|.|++ +..||.++|.+..... ..+.|.|.+=.
T Consensus 25 ~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~N 63 (92)
T 2ro0_A 25 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYN 63 (92)
T ss_dssp CTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSC
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcC
Confidence 4999999998 8899999999887644 47899998666
No 36
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=80.47 E-value=2 Score=45.20 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=37.2
Q ss_pred cccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEc-cCCCceeeecC
Q 001977 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (987)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~ 150 (987)
-+|.-|-+.|. |+.||.|.|++.... +...|.| |-|..|.+.++
T Consensus 67 ~~G~~c~a~~~-d~~wyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~ 111 (246)
T 2hqx_A 67 RRGEFCIAKFV-DGEWYRARVEKVESP-AKIHVFYIDYGNREVLPST 111 (246)
T ss_dssp CTTCEEEEECT-TSCEEEEEEEEEEET-TEEEEEETTTCCEEEECGG
T ss_pred CCCCEEEEEcC-CCCEEEEEEEEEcCC-CeEEEEEEeCCCeEEEeHH
Confidence 48999999999 999999999999764 4788888 66999988653
No 37
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.00 E-value=2.7 Score=36.93 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=34.8
Q ss_pred CCccccceEEEEcC---CCCceEEEEEEeeeCCC--CeEEEEccCCCc
Q 001977 102 GEDVLRKRIRVYWP---LDKAWYEGCVKSFDKEC--NKHLVQYDDGED 144 (987)
Q Consensus 102 ~~~~vg~rv~v~wp---~d~~~y~g~v~~~~~~~--~~h~v~Yddg~~ 144 (987)
..-.||.+|.|+++ .+..||.++|.+.+... .++.|.|.+=..
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~Nk 55 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNR 55 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCS
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCc
Confidence 34459999999997 58899999999988754 478999986653
No 38
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=78.23 E-value=3.1 Score=42.35 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=40.7
Q ss_pred cccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEc-cCCCceeeecCcceEEEE
Q 001977 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLGKEKIEWV 157 (987)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~~e~~~~~ 157 (987)
-+|.-|-+.++.|+.||.|.|++..+. +...|.| |=|..|.+.+. +++.+
T Consensus 67 ~~G~~c~a~~~~d~~wyRa~V~~~~~~-~~~~V~~vDyG~~~~v~~~--~l~~l 117 (201)
T 4b9w_A 67 EIGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTD--QLQAI 117 (201)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECTT-SCEEEEETTTCCEEEECGG--GEEEC
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEccCCEEEEEHH--HhccC
Confidence 378899999999999999999998764 4578888 88999988654 45555
No 39
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=76.53 E-value=2.9 Score=35.80 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=32.0
Q ss_pred cccceEEEEcCC--CCceEEEEEEeeeCCCC--eEEEEccCCC
Q 001977 105 VLRKRIRVYWPL--DKAWYEGCVKSFDKECN--KHLVQYDDGE 143 (987)
Q Consensus 105 ~vg~rv~v~wp~--d~~~y~g~v~~~~~~~~--~h~v~Yddg~ 143 (987)
.||.+|.|+|++ +..||.+.|.+.+...+ ++.|.|.+=.
T Consensus 7 ~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwn 49 (76)
T 2lcc_A 7 LTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWN 49 (76)
T ss_dssp STTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSC
T ss_pred CCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcC
Confidence 499999999994 37899999999887655 5789998544
No 40
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=74.54 E-value=11 Score=33.62 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=31.8
Q ss_pred cccceEEEEcCCCCceEEEEEEeeeCCC--CeEEEEccCCCc
Q 001977 105 VLRKRIRVYWPLDKAWYEGCVKSFDKEC--NKHLVQYDDGED 144 (987)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~--~~h~v~Yddg~~ 144 (987)
.||.+|.|++ +..||.++|.+..... .++.|.|.+-..
T Consensus 27 ~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~Nk 66 (94)
T 2rnz_A 27 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNK 66 (94)
T ss_dssp CTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSCS
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCc
Confidence 4999999997 8899999999877644 378999987663
No 41
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=66.72 E-value=13 Score=32.76 Aligned_cols=38 Identities=16% Similarity=0.025 Sum_probs=30.9
Q ss_pred cceEEEEcCCCCceEEEEEEeeeCCC-----CeEEEEccCCCce
Q 001977 107 RKRIRVYWPLDKAWYEGCVKSFDKEC-----NKHLVQYDDGEDE 145 (987)
Q Consensus 107 g~rv~v~wp~d~~~y~g~v~~~~~~~-----~~h~v~Yddg~~e 145 (987)
|.+|-|+|+ |..||+++|..-.... .++.|.|.+-...
T Consensus 18 ~e~vlc~~~-dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkR 60 (92)
T 2bud_A 18 DKIYFIRRE-DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRR 60 (92)
T ss_dssp TSCEEEECT-TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTT
T ss_pred CCEEEEEeC-CCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccc
Confidence 889999997 7889999999877543 3799999876643
No 42
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=66.04 E-value=6.6 Score=35.51 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=31.0
Q ss_pred ccccceEEEEcCCCCceEEEEEEeeeCCCC--eEEEEccCCC
Q 001977 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECN--KHLVQYDDGE 143 (987)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~--~h~v~Yddg~ 143 (987)
-.+|.+|-+|| +..||++.|.+.....+ ++.|.|.+=.
T Consensus 23 f~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~GwN 62 (102)
T 2f5k_A 23 FQEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSGWN 62 (102)
T ss_dssp CCTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETTSC
T ss_pred cCCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcC
Confidence 34999999999 68999999999875444 7899998543
No 43
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=64.43 E-value=6.9 Score=46.44 Aligned_cols=45 Identities=24% Similarity=0.292 Sum_probs=39.1
Q ss_pred ccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEc-cCCCceeeecC
Q 001977 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (987)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~ 150 (987)
--+|.-|-+.|. |+.||.|.|++.+. .+...|.| |-|..|.+.++
T Consensus 412 ~~~G~~c~a~~~-d~~wyRa~I~~v~~-~~~~~V~fvDyGn~e~v~~~ 457 (570)
T 3bdl_A 412 PRRGEFCIAKFV-DGEWYRARVEKVES-PAKIHVFYIDYGNREVLPST 457 (570)
T ss_dssp CCTTCEEEEECT-TSCEEEEEEEEEEE-TTEEEEEETTTCCEEEECGG
T ss_pred CCcCCEEEEEEC-CCCEEEEEEEEEcC-CCeEEEEEEeCCCeEEEEHH
Confidence 349999999999 99999999999987 56788888 77999998765
No 44
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=59.65 E-value=47 Score=29.02 Aligned_cols=47 Identities=23% Similarity=0.421 Sum_probs=36.4
Q ss_pred ccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCC---ceeeecCcce
Q 001977 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGE---DELLDLGKEK 153 (987)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~---~e~l~l~~e~ 153 (987)
||.+|.+.-+.. .||.+.|+.-+....+-.|.||.=+ .||++....+
T Consensus 22 vGmkLEA~D~~~-~~~~a~i~~v~~~~~~v~VHfdGW~~~yDeWv~~dS~~ 71 (88)
T 2eqm_A 22 IGARLEALDYLQ-KWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNR 71 (88)
T ss_dssp SSCEEEEECTTS-CEEEEEEEEEETTTTEEEEEESSSTTTEEEEEETTSCC
T ss_pred CCCEEEEEcCCC-CeeEEEEEEEeccCCEEEEEECCCCCcccEEeeCCCCc
Confidence 999999998764 6999999999988889999998544 3444444433
No 45
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=59.37 E-value=8 Score=35.87 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=32.3
Q ss_pred ccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCC
Q 001977 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGE 143 (987)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~ 143 (987)
--||.+|..-|+ ++.||.|+|++-... --|.|.+|||-
T Consensus 6 v~vGq~V~akh~-ngryy~~~V~~~~~~-~~y~V~F~DgS 43 (118)
T 2qqr_A 6 ITAGQKVISKHK-NGRFYQCEVVRLTTE-TFYEVNFDDGS 43 (118)
T ss_dssp CCTTCEEEEECT-TSSEEEEEEEEEEEE-EEEEEEETTSC
T ss_pred eccCCEEEEECC-CCCEEeEEEEEEeeE-EEEEEEcCCCC
Confidence 348999999999 788999999997555 46899999997
No 46
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=53.24 E-value=16 Score=37.13 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=35.3
Q ss_pred CCccccceEEEEcCCCCceEEEEEEeeeC--CCCeEEEEccCCCcee
Q 001977 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDK--ECNKHLVQYDDGEDEL 146 (987)
Q Consensus 102 ~~~~vg~rv~v~wp~d~~~y~g~v~~~~~--~~~~h~v~Yddg~~e~ 146 (987)
|+-.||.+|-.-| ..+.||.|+|+.--+ ...+.+|.++++....
T Consensus 7 ~~l~Vg~~vlg~k-~~~~W~rg~v~~I~~~~~g~~YkVkF~~~g~~i 52 (213)
T 3dlm_A 7 GDLIVSMRILGKK-RTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSL 52 (213)
T ss_dssp TTEETTCEEEEEC-TTSBEEEEEEEEEEEETTEEEEEEEESSSCEEE
T ss_pred CcEEEccEEEEEe-cCCcEEEEEEEEEEECCCCeEEEEEEcCCCCEE
Confidence 5566999999999 568899999999655 3467999999666554
No 47
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=49.73 E-value=22 Score=36.82 Aligned_cols=45 Identities=20% Similarity=0.314 Sum_probs=34.7
Q ss_pred ccceEEEEcCCCCceEEEEEEeeeCCC---------CeEEEEccCC-CceeeecC
Q 001977 106 LRKRIRVYWPLDKAWYEGCVKSFDKEC---------NKHLVQYDDG-EDELLDLG 150 (987)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~---------~~h~v~Yddg-~~e~l~l~ 150 (987)
||--|-..|...++||+|.|+.+.... --++|.|||= +.+.+.|.
T Consensus 5 i~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~ 59 (226)
T 3ask_A 5 VNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMN 59 (226)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEE
T ss_pred cCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecc
Confidence 788999999999999999999998855 2456777654 45555443
No 48
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=47.86 E-value=53 Score=27.16 Aligned_cols=45 Identities=20% Similarity=0.374 Sum_probs=35.2
Q ss_pred ccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCC---ceeeecCc
Q 001977 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGE---DELLDLGK 151 (987)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~---~e~l~l~~ 151 (987)
||.++.+.-+... ||.++|+..|...++-.|.||.=+ .||+....
T Consensus 15 vGmkLEa~d~~~p-~~~AtV~~v~~~~~~~~VhfdGw~~~~D~W~~~dS 62 (69)
T 3sd4_A 15 VGAQLEARDRLKN-WYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCWDS 62 (69)
T ss_dssp TTCEEEEECTTSC-EEEEEEEEEETTTTEEEEEETTSCGGGCEEEETTC
T ss_pred CCCEEEEEECCCC-ccccEEEEEeccCCEEEEEeCCCCCCCCEEEcCCC
Confidence 9999999988776 599999999877889999997533 34544433
No 49
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=53.00 E-value=4 Score=37.29 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=40.7
Q ss_pred ccccCCccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeeecC
Q 001977 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (987)
Q Consensus 98 ~~~~~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (987)
....|.-.||..|.+--| |..|-+|+|...-.. ..++|.+||||+..|...
T Consensus 51 ~~ikG~l~vG~~ve~~~~-~~~~~~~~I~~i~D~-S~YtVVFdDGD~ktLrRt 101 (118)
T 2lcd_A 51 DQVKGPLRVGAIVETRTS-DGSFQEAIISKLTDA-SWYTVVFDDGDERTLRRT 101 (118)
Confidence 444677779999999998 468999999886554 468999999999887543
No 50
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=46.99 E-value=57 Score=31.35 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=35.0
Q ss_pred CCEEEEEEEeCCCCeEE-EEEEc-----CcchHHHHHHHHHhcCCcEEEec
Q 001977 471 DRCFGICVVDVATSRII-LGQVM-----DDLDCSVLCCLLSELRPVEIIKP 515 (987)
Q Consensus 471 ~~~~Gva~vD~sTG~f~-l~qf~-----Dd~~~s~L~tlL~~~~P~EIl~~ 515 (987)
...+|+|++|....... ++.+. -...+..|..++.+++|.+|++.
T Consensus 12 ~~riGvAv~d~~g~~a~p~~~I~~~~~r~~~~~~~l~~li~~~~~~~ivVG 62 (150)
T 1vhx_A 12 TKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLG 62 (150)
T ss_dssp SSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTSEEEEEEEE
T ss_pred CCEEEEEEEECCCCEEeeEEEEEcCCcchHHHHHHHHHHHHHcCCCEEEEe
Confidence 46799999998655554 45553 23457899999999999999997
No 51
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=44.00 E-value=7.2 Score=36.46 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=32.8
Q ss_pred CccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCc
Q 001977 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGED 144 (987)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~ 144 (987)
+--||.+|..-|+ ++.||.|+|++-... -.+.|.+|||-.
T Consensus 6 ~v~vGq~V~ak~~-ngryy~~~V~~~~~~-~~y~V~F~DgS~ 45 (123)
T 2xdp_A 6 VISVGQTVITKHR-NTRYYSCRVMAVTSQ-TFYEVMFDDGSF 45 (123)
T ss_dssp CCCTTCCCCCCCC-CCCCCCCEEEEEEEE-EEEEEEETTSCE
T ss_pred ccccCCEEEEECC-CCcEEeEEEEEEeeE-EEEEEEcCCCCc
Confidence 3448888888898 589999999998863 469999999983
No 52
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=37.89 E-value=45 Score=30.83 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=38.1
Q ss_pred CCccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCceeeecCcceEEE
Q 001977 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEW 156 (987)
Q Consensus 102 ~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~~e~~~~ 156 (987)
|.-..|..|+|-|++.. -|.|+-.+.... ..++|..+||.. +.+..+.|.-
T Consensus 62 GpP~~G~~V~V~W~DG~-~y~a~f~g~~~~-~~Y~V~feDgs~--~~~kR~~iyt 112 (118)
T 2qqr_A 62 GPPAEGEVVQVRWTDGQ-VYGAKFVASHPI-QMYQVEFEDGSQ--LVVKRDDVYT 112 (118)
T ss_dssp CCCCTTCEEEEECTTSC-EEEEEEEEEEEE-EEEEEEETTSCE--EEECGGGEEE
T ss_pred CCCCCCCEEEEEcCCCC-EeeeEEeceeEE-EEEEEEECCCCE--EEEcHHHeec
Confidence 67778999999999664 888888876554 458899999984 5555555543
No 53
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=37.04 E-value=45 Score=31.06 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=33.3
Q ss_pred CCccccceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccCCCc
Q 001977 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGED 144 (987)
Q Consensus 102 ~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~ 144 (987)
|.-..|..|+|-|++.. -|.|...+.... ..++|..+||..
T Consensus 63 GpP~~G~~V~V~W~DG~-~y~a~f~g~~~~-~~YtV~FeDgs~ 103 (123)
T 2xdp_A 63 GPPAEGEVVQVKWPDGK-LYGAKYFGSNIA-HMYQVEFEDGSQ 103 (123)
T ss_dssp CCCCTTCEEEEECTTSC-EEEEEEEEEEEE-EEEEEECTTSCE
T ss_pred CCCCCCCEEEEEcCCCC-EEeEEEeeeeeE-EEEEEEECCCCe
Confidence 77779999999998654 888888887655 458899999973
No 54
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=36.46 E-value=70 Score=30.57 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=34.4
Q ss_pred cccceEEEEcCC-CCceEEEEEEeee----CCCCeEEEEccCCCcee
Q 001977 105 VLRKRIRVYWPL-DKAWYEGCVKSFD----KECNKHLVQYDDGEDEL 146 (987)
Q Consensus 105 ~vg~rv~v~wp~-d~~~y~g~v~~~~----~~~~~h~v~Yddg~~e~ 146 (987)
.+--||--||++ ...||.++..+-. ....+..|+|||+..-.
T Consensus 7 ~~~NrVfAff~G~p~~YYPATcvg~~~~~~~~~~~y~VrFdDs~~~~ 53 (153)
T 2fhd_A 7 SFKNRVLAFFKGYPSFYYPATLVAPVHSAVTSSIMYKVQFDDATMST 53 (153)
T ss_dssp CGGGEEEEECCSSSCCEEEEEEEEEECCSSCCBCEEEEEETTSCEEE
T ss_pred cccceEEEEcCCCcccccceEEEccCCCcccCCeEEEEEEcCCCCCc
Confidence 346789999995 6789999999877 46779999999996545
No 55
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=34.93 E-value=62 Score=28.77 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=32.4
Q ss_pred CCCEEEEEEEeCCCCeEE-EEEE---cCcchHHHHHHHHHhcCCcEEEec
Q 001977 470 TDRCFGICVVDVATSRII-LGQV---MDDLDCSVLCCLLSELRPVEIIKP 515 (987)
Q Consensus 470 ~~~~~Gva~vD~sTG~f~-l~qf---~Dd~~~s~L~tlL~~~~P~EIl~~ 515 (987)
+...+|||+.|.....-. +..+ ..+.....|..++.+++|.+||+-
T Consensus 9 G~kriGvAvsd~~~~~A~pl~ti~~~~~~~~~~~l~~li~e~~v~~iVvG 58 (98)
T 1iv0_A 9 GEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVG 58 (98)
T ss_dssp SSSEEEEEEECSCCSSCCCEEEEECCCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEEEeCCCCeeeeeEEEEccCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 357899999998533311 3333 223456789999999999999974
No 56
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=37.03 E-value=10 Score=33.05 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=28.5
Q ss_pred cccceEEEEcCCCCceEEEEEEeeeCCC--CeEEEEccCC
Q 001977 105 VLRKRIRVYWPLDKAWYEGCVKSFDKEC--NKHLVQYDDG 142 (987)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~--~~h~v~Yddg 142 (987)
.+|.+|-++|. ..||.+.|....... .++.|.|.+=
T Consensus 14 ~~Gekv~~~~~--~~~y~AkIl~i~~~~~~~~YyVHY~Gw 51 (85)
T 2lrq_A 14 VDGERVLCFHG--PLIYEAKVLKTKPDATPVEYYIHYAGW 51 (85)
Confidence 49999999995 479999999877543 4788888753
No 57
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=30.38 E-value=77 Score=28.48 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=29.7
Q ss_pred cccceEEEEcCC---CCceEEEEEEeeeCCC-------CeEEEEccC
Q 001977 105 VLRKRIRVYWPL---DKAWYEGCVKSFDKEC-------NKHLVQYDD 141 (987)
Q Consensus 105 ~vg~rv~v~wp~---d~~~y~g~v~~~~~~~-------~~h~v~Ydd 141 (987)
-+|.+|-+|+++ ...+|++.|....... -.+.|.|..
T Consensus 21 ~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~G 67 (101)
T 3m9q_A 21 HKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQG 67 (101)
T ss_dssp CTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETT
T ss_pred cCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCC
Confidence 499999999986 6789999999987532 268888863
No 58
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=27.76 E-value=1.5e+02 Score=27.92 Aligned_cols=53 Identities=28% Similarity=0.318 Sum_probs=38.4
Q ss_pred EEEEEEecCCCCCCCCCCCEEEEEEEeCCCCeEE-EEEE--c-CcchHHHHHHHHHhcCCcEEEec
Q 001977 454 YLMALTESNQSPASQSTDRCFGICVVDVATSRII-LGQV--M-DDLDCSVLCCLLSELRPVEIIKP 515 (987)
Q Consensus 454 yLlaI~e~~~~~~~~~~~~~~Gva~vD~sTG~f~-l~qf--~-Dd~~~s~L~tlL~~~~P~EIl~~ 515 (987)
-+|+|-. +...+|||+.|..++... +..+ . .+.....|..++.+++|..||+-
T Consensus 4 ~iLglD~---------G~kriGvAvsd~~~~~A~pl~ti~~~~~~~~~~~l~~li~e~~v~~iVvG 60 (138)
T 1nu0_A 4 TLMAFDF---------GTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVG 60 (138)
T ss_dssp EEEEEEC---------CSSEEEEEEEETTTTEEEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEE
T ss_pred eEEEEEe---------CCCEEEEEEEcCCCCEEeeEEEEEcCCcchHHHHHHHHHHHcCCCEEEEe
Confidence 3667754 357899999999766543 2333 1 23457899999999999999974
No 59
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=26.97 E-value=1.8e+02 Score=28.83 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=34.6
Q ss_pred ccccceEEEEcC---CCCceEEEEEEeeeCCCCeEEEEccCCC-ceeeecCcceEEEE
Q 001977 104 DVLRKRIRVYWP---LDKAWYEGCVKSFDKECNKHLVQYDDGE-DELLDLGKEKIEWV 157 (987)
Q Consensus 104 ~~vg~rv~v~wp---~d~~~y~g~v~~~~~~~~~h~v~Yddg~-~e~l~l~~e~~~~~ 157 (987)
-.+|..|-.+=. .+..|.-+.|++|+..++++.|+=.|.| .+...++...|--+
T Consensus 45 ~~~G~~VAakvk~~~~~~~WILa~Vv~~~~~~~rYeV~D~d~eg~~~~~~s~~~IIPL 102 (180)
T 3mea_A 45 ARPGDKVAARVKAVDGDEQWILAEVVSYSHATNKYEVDDIDEEGKERHTLSRRRVIPL 102 (180)
T ss_dssp CCTTCEEEEEEECCC--EEEEEEEEEEEETTTTEEEEEECCTTCCEEEEEEGGGEEEC
T ss_pred cCCCCEEEEEcCCCCCCccEEEEEEEEEcCCCCEEEEecCCCCCceeEEeCHHHEEEC
Confidence 346666654432 3578999999999999999999775533 23344544444444
No 60
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=26.15 E-value=84 Score=29.47 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=25.9
Q ss_pred cceEEEEcCCCCceEEEEEEeeeCCCCeEEEEccC
Q 001977 107 RKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD 141 (987)
Q Consensus 107 g~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd 141 (987)
+..|.|+= ..+.||+|+|+.+ ....-.|.|++
T Consensus 5 ~~~VEV~~-~~G~~y~a~V~~v--~~d~~~V~f~n 36 (128)
T 3h8z_A 5 GLPVEVRG-SNGAFYKGFVKDV--HEDSVTIFFEN 36 (128)
T ss_dssp TCEEEEEC-TTSCEEEEEEEEE--CSSEEEEEETT
T ss_pred ccEEEEec-CCCCEEEEEEEEE--eCCcEEEEEcc
Confidence 55677776 5689999999997 56779999976
No 61
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=25.91 E-value=89 Score=28.48 Aligned_cols=38 Identities=8% Similarity=0.149 Sum_probs=29.4
Q ss_pred cccceEEEEcCC---CCceEEEEEEeeeCCC-------CeEEEEccCC
Q 001977 105 VLRKRIRVYWPL---DKAWYEGCVKSFDKEC-------NKHLVQYDDG 142 (987)
Q Consensus 105 ~vg~rv~v~wp~---d~~~y~g~v~~~~~~~-------~~h~v~Yddg 142 (987)
.+|.+|-+|+++ ...||++.|....... -.+.|.|..=
T Consensus 21 ~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~GW 68 (110)
T 3m9p_A 21 HSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGW 68 (110)
T ss_dssp CTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTS
T ss_pred cCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccceEEEEEECCC
Confidence 499999999873 2689999999987532 3688999643
No 62
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=25.41 E-value=1.3e+02 Score=25.97 Aligned_cols=40 Identities=25% Similarity=0.242 Sum_probs=29.7
Q ss_pred CccccceEEEEcCCCCceEEEEEEeeeCCCC---eEEEEccCCC
Q 001977 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECN---KHLVQYDDGE 143 (987)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~---~h~v~Yddg~ 143 (987)
..++|++|.|.=- ++.-|.|++.+||.--. ...+.|.+|+
T Consensus 12 ~~~~~k~V~V~Lk-~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~ 54 (86)
T 3s6n_F 12 NGLTGKPVMVKLK-WGMEYKGYLVSVDGYMNMQLANTEEYIDGA 54 (86)
T ss_dssp HHHTTSEEEEEET-TSCEEEEEEEEECTTCCEEEEEEEEEETTE
T ss_pred HHhCCCeEEEEEc-CCeEEEEEEEEEcCceEEEEeeEEEEcCCc
Confidence 4568999998655 46899999999999776 3344555553
No 63
>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus}
Probab=24.43 E-value=65 Score=27.12 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCCCCCCCCccccccccccCCCCCCCcccccccCCcc-----ccceEEEEcCC
Q 001977 60 TPSPSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTPAAAKSYGEDV-----LRKRIRVYWPL 116 (987)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vg~rv~v~wp~ 116 (987)
+|..+.+||||---.+|.++++--.=.+. ||.-. .++.|+++ +|..|-|..|-
T Consensus 13 ~~~~~~gPttprkGPPKFKQR~TRqFKSK-pPKkG---vkGfgddipgmeglgtditvicpw 70 (87)
T 2ju4_A 13 ATRVMGGPCTPRKGPPKCKQRQTRQCKSK-PPKKG---VQGCGDDIPGMEGCGTDITVICPW 70 (87)
T ss_dssp CSSSSCSSCCCSSSSCCCSSCSSSSCCSS-CSCSS---SSCCCCSSCSSSSCSHHHHTCCTT
T ss_pred CCccCCCCCCCCCCCCccchhhccccccC-CCCCC---cccccccccccccccCCeeEEcch
Confidence 45666788888766666554432221222 22222 45555554 77778777764
No 64
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=24.10 E-value=1.5e+02 Score=25.96 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=30.7
Q ss_pred CCccccceEEEEcCCCCceEEEEEEeeeCCCC---eEEEEccCC
Q 001977 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECN---KHLVQYDDG 142 (987)
Q Consensus 102 ~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~---~h~v~Yddg 142 (987)
=..++|++|.|+=-..+.-|.|++.+||.--. .-.+.+.+|
T Consensus 26 L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~ 69 (93)
T 1n9r_A 26 LKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAG 69 (93)
T ss_dssp CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETT
T ss_pred HHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCC
Confidence 45679999999765444999999999998777 344555444
No 65
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=23.63 E-value=68 Score=27.95 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=27.1
Q ss_pred ccccceEEEEcCCCCceEEEEEEeeeCCCCeEEE
Q 001977 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLV 137 (987)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v 137 (987)
.+||+.|+|-= .|+..|.|.|.+|||.+.--.+
T Consensus 14 ~li~KeV~V~l-~dg~~y~G~l~tvDp~s~sIvL 46 (86)
T 1y96_A 14 DYIYKEVRVTA-SEKNEYKGWVLTTDPVSANIVL 46 (86)
T ss_dssp HTTTCEEEEEE-TTTEEEEEEEEEECTTTCCEEE
T ss_pred hhcCCEEEEEE-cCCCEEEEEEEEECCCceEEEE
Confidence 57999999985 5788999999999998774433
No 66
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=23.24 E-value=2e+02 Score=23.98 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=29.6
Q ss_pred CccccceEEEEcCCCCceEEEEEEeeeCCCC---eEEEEccCC
Q 001977 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECN---KHLVQYDDG 142 (987)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~---~h~v~Yddg 142 (987)
..++|++|.|.=-.++.-|.|++.+||.--. ...+.+..|
T Consensus 11 ~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~ 53 (77)
T 1ljo_A 11 KSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGE 53 (77)
T ss_dssp HHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETT
T ss_pred HHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecC
Confidence 3468999999875443899999999998777 444555444
No 67
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=23.24 E-value=2e+02 Score=23.80 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=29.7
Q ss_pred CccccceEEEEcCCCCceEEEEEEeeeCCCC---eEEEEccCC
Q 001977 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECN---KHLVQYDDG 142 (987)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~---~h~v~Yddg 142 (987)
..++|++|.|.=- |+.-|.|++.+||..-. ...+.|..|
T Consensus 10 ~~~~~~~V~V~l~-~g~~~~G~L~~~D~~mNlvL~d~~e~~~~ 51 (75)
T 1h64_1 10 HRSLDKDVLVILK-KGFEFRGRLIGYDIHLNVVLADAEMIQDG 51 (75)
T ss_dssp HTTTTSEEEEEET-TSEEEEEEEEEECTTCCEEEEEEEEEETT
T ss_pred HHHCCCEEEEEEC-CCCEEEEEEEEEeCCCCeEEeeEEEEeeC
Confidence 3568999988754 67899999999998877 455566443
No 68
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=22.95 E-value=99 Score=25.82 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=28.8
Q ss_pred CccccceEEEEcCCCCceEEEEEEeeeCCCC---eEEEEccCC
Q 001977 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECN---KHLVQYDDG 142 (987)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~---~h~v~Yddg 142 (987)
..++|++|.|.=- |+.-|.|++.+||.--. ...+.|.+|
T Consensus 10 ~~~~~k~V~V~Lk-~g~~~~G~L~~~D~~mNlvL~d~~e~~~~ 51 (75)
T 4emk_B 10 NKVIGKKVLIRLS-SGVDYKGILSCLDGYMNLALERTEEYVNG 51 (75)
T ss_dssp HHTTTSEEEEECT-TSCEEEEEEEEECTTCEEEEEEEEEEETT
T ss_pred HHhCCCeEEEEEc-CCcEEEEEEEEEcCcceEEEccEEEEecC
Confidence 3568999999654 67899999999998765 334455444
No 69
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=21.90 E-value=2.2e+02 Score=25.56 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=36.7
Q ss_pred ccCCccccceEEEEcCCCCceEEEEEEeeeCCCCeE---EE-EccCCC----ceeeecCcceEEEEec
Q 001977 100 SYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKH---LV-QYDDGE----DELLDLGKEKIEWVQE 159 (987)
Q Consensus 100 ~~~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h---~v-~Yddg~----~e~l~l~~e~~~~~~~ 159 (987)
..=..++|++|.|.=- +..-|.|++.+||.--.-. .+ .+.||+ ...+-+.-..|.++..
T Consensus 19 ~lL~~~igk~V~V~Lk-~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~ 85 (105)
T 4emh_A 19 TLLNATQGRPILVELK-NGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRI 85 (105)
T ss_dssp -------CCEEEEEET-TSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC
T ss_pred HHHHHhCCCEEEEEEC-CCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEec
Confidence 3356789999999655 4678999999999877633 22 345775 2345566777777753
No 70
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*
Probab=21.44 E-value=34 Score=38.30 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=50.8
Q ss_pred ccCCccccceEEEEcCCCCceEEEEEEeeeCCC---CeEEEEccCCCceeeecCc---ceEEEEecchhhhhhhcccc
Q 001977 100 SYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKEC---NKHLVQYDDGEDELLDLGK---EKIEWVQESVSLLKRLRRDS 171 (987)
Q Consensus 100 ~~~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~---~~h~v~Yddg~~e~l~l~~---e~~~~~~~~~~~~~~~~~~~ 171 (987)
..|..+.-..+.+.|-.+..|+.|.++.|.+.+ .-|.+.|-||--|.+..-+ -++++. -.++-++|+++++
T Consensus 48 ~fg~~~td~m~~~~~~~~~~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEg~k~y~g~dg~i~~f-rld~H~~RL~~Sa 124 (386)
T 2coi_A 48 VFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLF-QPNLNMDRMYRSA 124 (386)
T ss_dssp CTTCCCCSEEEEEEEETTTEECCCEEEECCCEEECTTCHHHHSCCEEECCEEEEECTTSCEEEE-SHHHHHHHHHHHH
T ss_pred CCccccccceEEEEeCCCcEEECCEEeecccCccCcccchhhcCceeEEEEEEEeCCCCceeec-CHHHHHHHHHHHH
Confidence 446666667788899988899999999987643 3567789898888886643 244444 4566677777654
No 71
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=20.26 E-value=61 Score=37.64 Aligned_cols=20 Identities=10% Similarity=0.307 Sum_probs=17.0
Q ss_pred ccceEEEEcCCCCceEEEEE
Q 001977 106 LRKRIRVYWPLDKAWYEGCV 125 (987)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v 125 (987)
.|-.|.|.-..|..|+.|+.
T Consensus 106 ~gd~i~v~~~~~~~ww~~~~ 125 (535)
T 2h8h_A 106 KGERLQIVNNTEGDWWLAHS 125 (535)
T ss_dssp TTCEEEEEECSSSSEEEEEE
T ss_pred CCCEEEEEEecCCCceEEEE
Confidence 68888888888888998876
Done!