BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001978
(987 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P59015|VPS18_DANRE Vacuolar protein sorting-associated protein 18 homolog OS=Danio
rerio GN=vps18 PE=2 SV=2
Length = 974
Score = 531 bits (1367), Expect = e-149, Method: Compositional matrix adjust.
Identities = 337/980 (34%), Positives = 537/980 (54%), Gaps = 96/980 (9%)
Query: 24 ITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT 83
I S N+ + + K L+R D G D + + GR + +H++F+DP GSH +
Sbjct: 57 INQFSVCNNQLCMSLGKDTLLRIDLGKPDQPN-QIELGRKDDSKVHRLFLDPTGSHLVIC 115
Query: 84 IVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143
+ + E Y + K R LS+ +G ++ ++ WN+ +E +T I++GT G + E
Sbjct: 116 LTTN---ECVYLNRNTQKVRGLSRWRGHLIESIGWNKLIGSETNTGPILVGTSQGIIFEA 172
Query: 144 AVDEKD------KREKYIKLLFELNE--LPEAFMGLQMETASLSNGTRYYVMAVTPTRLY 195
+ + ++Y + + L E P L++E T+Y+++A T RL+
Sbjct: 173 EISASEGSLFNTNPDQYFRQVHYLEEDGKPAPVCCLEVERGL---ETKYFIIATTRKRLF 229
Query: 196 SFTGF---GS----LDTVFASYLDRAVHFMELPGEILNSELHFFIKQRRA--VHFAWLSG 246
F G GS ++FA D F E P + SE+ F+ + R+ FAW+ G
Sbjct: 230 QFVGKLAEGSEQQGFSSIFAQNQDLLPSFQEFPVNMGYSEITFYTSKLRSRPKTFAWMMG 289
Query: 247 AGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEA-----VKPGSMAVSEYHFL 301
G+ +G L++ V +LLS ++ E + VKP S+ ++++HFL
Sbjct: 290 NGVLYGQLDY-------------VRPDSLLSDVQVWEYTQDIDLNFVKPISIVLTQFHFL 336
Query: 302 LLMGNKVKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVN 361
LL+ ++V+ + ++ Q++ E F + ++ + I D G+ + Y + ++F+ +
Sbjct: 337 LLLPDRVRGICTLNGQVVHEDVFPEKFGTLQKMI----KDPITGLVWIYTEKAVFRYHIQ 392
Query: 362 DEGRDMWKVYLDMKEYAAALANCRD-PLQRDQVYLVQAEAAFATKDFHRAASFYAKI-NY 419
E RD+W++Y++M ++ A C+D P D V +AE F K + +A YA NY
Sbjct: 393 KEARDVWQMYMNMNKFDLAKEYCKDRPECLDMVLAKEAEHCFQNKRYLESAKCYALTQNY 452
Query: 420 ILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLE 479
FEEI LKFI +++AL+ FL++KL NL +K QIT++ TW TELYL+++ +L
Sbjct: 453 ---FEEIALKFIEAKQEEALKEFLIKKLVNLKPSEKTQITLLVTWLTELYLNRLGQL--- 506
Query: 480 DDTALENRSSEYQSIMREFRAFLSDCK--DVL--DEATTMKLLESYGRVEELVFFASLKE 535
A E + + EFR FL K D + +T LL S+G V+ +V+F+ + +
Sbjct: 507 --EADEGKQHLFLETREEFRTFLKSPKHKDCFYNNRSTIYDLLASHGDVDNMVYFSVIMQ 564
Query: 536 QHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNN-LNP 594
+E V+ HY Q + AL +L K L YKF+P L+ + V++W+ N L+P
Sbjct: 565 DYERVISHYCQHDDYSAALDVLSK-HCDDKLFYKFSPVLMQHIPKKVVDAWIQMGNRLDP 623
Query: 595 RKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLR 654
+ LIPA++ YS + + + +E I+Y+EFCV+ L ++ +HN LLSLYAK + D ALL
Sbjct: 624 KNLIPALVNYS-QMGSMQQINETIRYMEFCVYELDVKEEAIHNYLLSLYAKHKPD-ALLW 681
Query: 655 FLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVDPEL 714
+L+ + + + YD KYALRLC + ++ACV +Y +M ++EEAV LAL+VD +L
Sbjct: 682 YLE----QAGTHVSDIHYDLKYALRLCSEHGYLQACVLVYKIMELYEEAVDLALKVDVDL 737
Query: 715 AMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPF 774
A + AD EDDE+LRKKLWL +A+HV+++EK +++KA+ L + LLKIEDILPF
Sbjct: 738 AKSCADLPEDDEELRKKLWLKIARHVVQEEK-----DVKKAMNCLSSCN-LLKIEDILPF 791
Query: 775 FPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDE 834
FPDF ID FKEAICSSL++YNK IE+LKQEM +AT A IR DI + +Y V++ E
Sbjct: 792 FPDFVTIDHFKEAICSSLEEYNKHIEELKQEMEEATESAKRIREDIQEMRNKYGVVESQE 851
Query: 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTNETQAEY 894
C C +L PFY+F CGH FH CL+ V + +
Sbjct: 852 KCATCDFPLL-----------------NRPFYLFLCGHMFHYDCLLQEVIPHLSVYKQNK 894
Query: 895 ILDLQKQLTLLGSEARKDANGVTTEDSIT---SMTPTDKLRSQLDDAIASECPFCGDLMI 951
+ +LQK+L ++ K + ED+++ ++++S +DD IA EC +CG+LMI
Sbjct: 895 LDELQKKLA-ATTQTTKARHKPREEDTVSLGKGQGSREQIKSDIDDIIACECVYCGELMI 953
Query: 952 REISLPFIAPEEAHQ-FASW 970
+ I PFI P++ Q +SW
Sbjct: 954 KSIDKPFIDPQKFDQEMSSW 973
>sp|Q9P253|VPS18_HUMAN Vacuolar protein sorting-associated protein 18 homolog OS=Homo
sapiens GN=VPS18 PE=1 SV=2
Length = 973
Score = 486 bits (1250), Expect = e-136, Method: Compositional matrix adjust.
Identities = 330/967 (34%), Positives = 509/967 (52%), Gaps = 88/967 (9%)
Query: 24 ITCMSAGNDVIVLGTSKGWLIRHDFG-AGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIA 82
IT + ++ + + K L+R D G A + ++L GR + +HK+F+D GSH
Sbjct: 57 ITSLVVSSNQLCMSLGKDTLLRIDLGKANEPNHVEL--GRKDDAKVHKMFLDHTGSH--- 111
Query: 83 TIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHE 142
++ E Y + K R L++ KG +V +V WN+ TE+ST I++GT G + E
Sbjct: 112 LLIALSSTEVLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTAQGHIFE 171
Query: 143 MAVDEKD------KREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYS 196
+ + + Y + L+ LNE +E +G R +V+A T RL+
Sbjct: 172 AELSASEGGLFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDG-RSFVIATTRQRLFQ 230
Query: 197 FTGFGS-------LDTVFASYLDRAVHFMELPGEILNSELHFFIKQRRAVH--FAWLSGA 247
F G + +FA+Y D F E P + SEL F+ + R+ FAW+ G
Sbjct: 231 FIGRAAEGAEAQGFSGLFAAYTDHPPPFREFPSNLGYSELAFYTPKLRSAPRAFAWMMGD 290
Query: 248 GIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGS-----MAVSEYHFLL 302
G+ +G L+ G S LLS ++ E E V PG+ + ++++HFLL
Sbjct: 291 GVLYGALDCGRPDS-------------LLSEERVWEYPEGVGPGASPPLAIVLTQFHFLL 337
Query: 303 LMGNKVKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVND 362
L+ ++V+ V ++ Q++ F + + + D++ G +AY + ++F+ V
Sbjct: 338 LLADRVEAVCTLTGQVVLRDHFLEKFGPLKH----MVKDSSTGQLWAYTERAVFRYHVQR 393
Query: 363 EGRDMWKVYLDMKEYAAALANCRD-PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYIL 421
E RD+W+ YLDM + A CR+ P D V +A+ F + + +A YA
Sbjct: 394 EARDVWRTYLDMNRFDLAKEYCRERPDCLDTVLAREADFCFRQRRYLESARCYALTQSY- 452
Query: 422 SFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDD 481
FEEI LKF+ +++AL FL RKL +L ++ Q T+++TW TELYL ++ L D
Sbjct: 453 -FEEIALKFLEARQEEALAEFLQRKLASLKPAERTQATLLTTWLTELYLSRLG-ALQGDP 510
Query: 482 TALENRSSEYQSIMREFRAFLSDCKD----VLDEATTMKLLESYGRVEELVFFASLKEQH 537
AL + Y+ FR FLS + A+ +LL S+G E +V+FA + + +
Sbjct: 511 EAL----TLYRETKECFRTFLSSPRHKEWLFASRASIHELLASHGDTEHMVYFAVIMQDY 566
Query: 538 EIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNN-LNPRK 596
E VV ++ Q ++AL +L + P L YKF+P LI + V++W+ + L+ R+
Sbjct: 567 ERVVAYHCQHEAYEEALAVLARHRDP-QLFYKFSPILIRHIPRQLVDAWIEMGSRLDARQ 625
Query: 597 LIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFL 656
LIPA++ YS + + + I+Y+EFCV+ L + +HN LLSLYA+ DS L
Sbjct: 626 LIPALVNYSQGGEVQ-QVSQAIRYMEFCVNVLGETEQAIHNYLLSLYARGRPDSLLAYLE 684
Query: 657 QCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVDPELAM 716
Q R + YD KYALRLC + RACVH+Y ++ ++EEAV LALQVD +LA
Sbjct: 685 QAGASPHRVH-----YDLKYALRLCAEHGHHRACVHVYKVLELYEEAVDLALQVDVDLAK 739
Query: 717 AEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFP 776
AD E+DE+LRKKLWL +A+HV+++E E+++ A+A L LLKIED+LPFFP
Sbjct: 740 QCADLPEEDEELRKKLWLKIARHVVQEE-----EDVQTAMACLASCP-LLKIEDVLPFFP 793
Query: 777 DFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDC 836
DF ID FKEAICSSL YN I++L++EM +AT A IR D+ L RY ++ + C
Sbjct: 794 DFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQELRGRYGTVEPQDKC 853
Query: 837 GVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTNETQAEYIL 896
C +L PFY+F CGH FHA CL+ V + +
Sbjct: 854 ATCDFPLL-----------------NRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLE 896
Query: 897 DLQKQLTLLGSEARKDANGVTTEDSITSMTPT-DKLRSQLDDAIASECPFCGDLMIREIS 955
+LQ++L A+ A E + P+ ++L++ LD+ +A+EC +CG+LMIR I
Sbjct: 897 ELQRKLGAAPPPAKGSARAKEAEGGAATAGPSREQLKADLDELVAAECVYCGELMIRSID 956
Query: 956 LPFIAPE 962
PFI P+
Sbjct: 957 RPFIDPQ 963
>sp|Q8R307|VPS18_MOUSE Vacuolar protein sorting-associated protein 18 homolog OS=Mus
musculus GN=Vps18 PE=1 SV=2
Length = 973
Score = 479 bits (1232), Expect = e-134, Method: Compositional matrix adjust.
Identities = 336/978 (34%), Positives = 507/978 (51%), Gaps = 106/978 (10%)
Query: 26 CMSAGNDVIVLGTSKGWLIRHDFG-AGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATI 84
CMS G D L+R D G A + ++L GR + +HK+F+D GSH +
Sbjct: 68 CMSLGKDT---------LLRIDLGKASEPNRVEL--GRKDDAKVHKMFLDHTGSH---LL 113
Query: 85 VGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMA 144
V E Y + K R L++ KG +V +V WN+ E+ST I++GT GQ+ E
Sbjct: 114 VALSSTEVLYMNRNGQKARPLARWKGQLVESVGWNKAMGNESSTGPILVGTAQGQIFEAE 173
Query: 145 VDEKD------KREKYIKLLFELNEL--PEAFMGLQMETASLSNGTRYYVMAVTPTRLYS 196
+ + + Y + L+ LNE P L+ E G +V+A T RL+
Sbjct: 174 LSASEGGLFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRG---FVIATTRQRLFQ 230
Query: 197 FTGFGSLDT-------VFASYLDRAVHFMELPGEILNSELHFFIKQRRAVH--FAWLSGA 247
F G DT +FA+Y D F E P + SEL F+ + R+ FAW+ G
Sbjct: 231 FIGRAVEDTEAQGFAGLFAAYTDHPPPFREFPSNLGYSELAFYTPKLRSAPRAFAWMMGD 290
Query: 248 GIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGS-----MAVSEYHFLL 302
G+ +G L+ G S LLS ++ E V PG+ + ++++HFLL
Sbjct: 291 GVLYGSLDCGRPDS-------------LLSEERVWEYPAGVGPGANPPLAIVLTQFHFLL 337
Query: 303 LMGNKVKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVND 362
L+ ++V+ V ++ Q++ F + + + D++ G +AY + ++F+ V
Sbjct: 338 LLADRVEAVCTLTGQVVLRDHFLEKFGPLRH----MVKDSSTGHLWAYTERAVFRYHVQR 393
Query: 363 EGRDMWKVYLDMKEYAAALANCRD-PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYIL 421
E RD+W+ YLDM + A CR+ P D V +A+ F + +A YA
Sbjct: 394 EARDVWRTYLDMNRFDLAKEYCRERPDCLDTVLAREADFCFRQHRYLESARCYALTQSY- 452
Query: 422 SFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDD 481
FEEI LKF+ +++AL FL RKL L ++ Q T+++TW TELYL ++ L + D
Sbjct: 453 -FEEIALKFLEARQEEALAEFLQRKLAGLKPTERTQATLLTTWLTELYLSRLGALQGDPD 511
Query: 482 TALENRSSEYQSIMREFRAFLSDCKD----VLDEATTMKLLESYGRVEELVFFASLKEQH 537
+ Y+ FR FLS + A+ +LL S+G E +V+FA + + +
Sbjct: 512 AL-----TLYRDTRECFRTFLSSPRHKEWLFASRASIHELLASHGDTEHMVYFAVIMQDY 566
Query: 538 EIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNN-LNPRK 596
E VV ++ Q ++AL +L + P L YKF+P LI + V++W+ + L+ R+
Sbjct: 567 ERVVAYHCQHEAYEEALAVLARHRDP-QLFYKFSPILIRHIPRQLVDAWIEMGSRLDARQ 625
Query: 597 LIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFL 656
LIPA++ YS A+ + + I+Y+EFCV+ L + +HN LLSLYA+ + S L
Sbjct: 626 LIPALVNYSQGGEAQ-QVSQAIRYMEFCVNVLGETEQAIHNYLLSLYARGQPASLLAYLE 684
Query: 657 QCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVDPELAM 716
Q R + YD KYALRLC + RACVH+Y ++ ++EEAV LALQVD +LA
Sbjct: 685 QAGASPHRVH-----YDLKYALRLCAEHGHHRACVHVYKVLELYEEAVDLALQVDVDLAK 739
Query: 717 AEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFP 776
AD E+DE+LRKKLWL +A+HV+++E E+++ A+A L LLKIED+LPFFP
Sbjct: 740 QCADLPEEDEELRKKLWLKIARHVVQEE-----EDVQTAMACLASCP-LLKIEDVLPFFP 793
Query: 777 DFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDC 836
DF ID FKEAICSSL YN I++L++EM +AT A IR D+ L RY ++ + C
Sbjct: 794 DFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQELRGRYGTVEPQDKC 853
Query: 837 GVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTNETQAEYIL 896
C +L PFY+F CGH FHA CL+ V + +
Sbjct: 854 STCDFPLL-----------------NRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLE 896
Query: 897 DLQKQLTLLGSEARKDANGVTTEDSITSMTPT-DKLRSQLDDAIASECPFCGDLMIREIS 955
+LQ++L + E ++ P+ ++L++ LD+ +A+EC +CG+LMIR I
Sbjct: 897 ELQRKLGAAPPPTKGSVKAKEAEAGAAAVGPSREQLKADLDELVAAECVYCGELMIRSID 956
Query: 956 LPFIAP---EEAHQFASW 970
PFI P EE H SW
Sbjct: 957 RPFIDPQRYEEEH--LSW 972
>sp|Q24314|VPS18_DROME Vacuolar protein sorting-associated protein 18 homolog
OS=Drosophila melanogaster GN=dor PE=1 SV=3
Length = 1002
Score = 339 bits (869), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 266/930 (28%), Positives = 455/930 (48%), Gaps = 87/930 (9%)
Query: 68 IHKVFVDPGGSHCIATIVGSGGA-----ETFYTH------AKWSKPRVLSKLKGLVVNAV 116
I ++F+DP G H I +V + Y H A+ K R + K K + AV
Sbjct: 111 ITRMFLDPTGHHIIIALVPKSATAGVSPDFLYIHCLESPQAQQLKVRRIEKFKDHEITAV 170
Query: 117 AWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176
A+N E+ST I+LGT G + E ++ K L++L + ++
Sbjct: 171 AFNPYHGNESSTGPILLGTSRGLIFETELNPAADGHVQRKQLYDLGLGRPKYPITGLKLL 230
Query: 177 SLSNGTRYYVMAVTPTRLYSFTGF-----GSLDTVFASYLD--RAVHFMELPGEILNSEL 229
+ N +RY ++ +P +Y+F SL +FA Y+ + H E ++ S+L
Sbjct: 231 RVPNSSRYIIVVTSPECIYTFQETLKAEERSLQAIFAGYVSGVQEPHCEERKTDLTFSQL 290
Query: 230 HFFI--KQRRAVHFAWLSGAGIYHGGLNFGAQRSSPNGDENFVENKAL-LSYSK---LSE 283
FF + +AWL G GI G L+ A N + N + L + K LS
Sbjct: 291 RFFAPPNSKYPKQWAWLCGEGIRVGELSIEA-----NSAATLIGNTLINLDFEKTMHLSY 345
Query: 284 GAEAVK-PGSMAVSEYHFLLLMGNKVKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDA 342
G + P + ++EYH +LL + V+ + ++++ + + FD+ + + D
Sbjct: 346 GERRLNTPKAFVLTEYHAVLLYADHVRAICLLNQEQVYQEAFDEARVGKP---LSIERDE 402
Query: 343 TAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCRDPLQRDQVYLVQ-AEAA 401
G Y Y ++F + V E R++W++YLD +Y A A+ + + Q+ L Q A+AA
Sbjct: 403 LTGSIYVYTVKTVFNLRVTREERNVWRIYLDKGQYELATAHAAEDPEHLQLVLCQRADAA 462
Query: 402 FATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKL----------DNLA 451
FA + AA +YA+ + SFEE+ LKF+ + ++ + ++ ++L D L
Sbjct: 463 FADGSYQVAADYYAETDK--SFEEVCLKFMVLPDKRPIINYVKKRLSRVTTKPMETDELD 520
Query: 452 KDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDE 511
+D I + W +LYL +IN + +D+ + +EY M E A + C +
Sbjct: 521 EDKMNIIKALVIWLIDLYLIQIN-MPDKDEEWRSSWQTEYDEFMME--AHVLSCTRQ-NR 576
Query: 512 ATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFA 571
T +L+ + + FA ++ VV ++ +ALQ L P +L YK+A
Sbjct: 577 ETVRQLIAEHADPRNMAQFAIAIGDYDEVVAQQLKAECYAEALQTLINQRNP-ELFYKYA 635
Query: 572 PDLIMLDAYETVESWMTT-NNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHN 630
P+LI TV++ M + L KL+P ++ + + + + +YLEF +++L+
Sbjct: 636 PELITRLPKPTVDALMAQGSRLEVEKLVPTLIIMEN----REQREQTQRYLEFAIYKLNT 691
Query: 631 EDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRAC 690
+ +HN LL LYA+ E L+++L+ + GR+ YD YA ++C A
Sbjct: 692 TNDAIHNFLLHLYAEHEP-KLLMKYLEIQ---GRDESL-VHYDIYYAHKVCTDLDVKEAR 746
Query: 691 VHIYGMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRE 750
V + M+ AV LAL D +LA A + D + +R+KLWL +A H I KGT
Sbjct: 747 VFLECMLRKWISAVDLALTFDMKLAKETASRPSDSK-IRRKLWLRIAYHDI---KGTN-- 800
Query: 751 NIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDAT 810
+++KA+ LKE D LL+IED+LPFF DF ID+FKEAIC +L DYN++I++L++EM + T
Sbjct: 801 DVKKALNLLKECD-LLRIEDLLPFFADFEKIDNFKEAICDALRDYNQRIQELQREMAETT 859
Query: 811 HGADNIRNDISALAQRYAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPC 870
D + ++ L Q ++ + C +C +LV PF++F C
Sbjct: 860 EQTDRVTAELQQLRQHSLTVESQDTCEICEMMLLV-----------------KPFFIFIC 902
Query: 871 GHAFHAQCLIAHVTQCTNETQAEYILDLQKQLTL-LGSEARKDANGVTTEDSITSMTPTD 929
GH FH+ CL HV + Q + L++QL + ++A+ + ++ + ++
Sbjct: 903 GHKFHSDCLEKHVVPLLTKEQCRRLGTLKQQLEAEVQTQAQPQSGALSKQQAMELQRKRA 962
Query: 930 KLRSQLDDAIASECPFCGDLMIREISLPFI 959
L+++++D +A++C FCG L+I I PF+
Sbjct: 963 ALKTEIEDILAADCLFCG-LLISTIDQPFV 991
>sp|O74925|PEP3_SCHPO Vacuolar membrane protein pep3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pep3 PE=3 SV=1
Length = 900
Score = 276 bits (707), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 232/909 (25%), Positives = 419/909 (46%), Gaps = 95/909 (10%)
Query: 5 RQVFQVDVLERYAAKGRGVITCMSAGNDVIVLGTSKGWLIRHDFG-AGDSYDIDLSAGRP 63
R VF LE+ + I C++ N+++V+ + L+ D D DI+L
Sbjct: 36 RGVFS---LEKVQLQFPVSIRCLAVENNILVMALTSDKLMIVDLERPEDIIDIELPKKVL 92
Query: 64 GEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQI 123
+K+F+DP G + T + G +T + + RVL+KLKG V AV WN +
Sbjct: 93 ALGLTYKIFLDPSGHYIFVT--TTAGDNCLFTPSH--QGRVLTKLKGHTVEAVQWN---L 145
Query: 124 TEASTKEIILGTDTGQLHEM--AVDEKDKR--EKYIKLLFELNELPEAFMGL--QMETAS 177
+ E+++ + +G L E+ +D + + EK I L+ E+ MG+ ++ S
Sbjct: 146 NGGNILELLIASKSGVLLELVLTLDSANLKRIEKSINTLYSF-PFMESPMGILKNIQDDS 204
Query: 178 LSNGTRYYVMAVTPT------RLYSFTGF-GSLDTVFASYLDRAVH---FMELPGEILNS 227
++ T ++ P +LY F GS+ + + + + P +
Sbjct: 205 MTIVTNKRILRFEPKTSRGKDQLYFSPAFQGSMKEILSFSEEETAQCFSYSPFPKNLAEP 264
Query: 228 ELHFFIKQRRAVHFAWLSGAG--IYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGA 285
+R ++ ++ I N + S P + N
Sbjct: 265 YTLALKTSKRIIYLDIMNPVNPDIQDYEFNESPKLSVPTVEMN----------------- 307
Query: 286 EAVKPGSMAVSEYHFLLLMGNKVKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDATAG 345
M ++ +H L + + +VNR++ + E Q + + S I+GLC D
Sbjct: 308 -------MILTSFHLAFLDLDTLYIVNRVNGK--ESYQ-QRVNLSPHEEILGLCCDHEKN 357
Query: 346 VFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCRDPLQRDQVYLVQAEAAFATK 405
++ Y +S+ ++ VN+E R+ V+L+ ++ AL R+ V + AE +
Sbjct: 358 TYWLYTTDSLHELVVNNETREASLVFLEKGDFEKALECANTAKVRNTVLVGYAEFLMEHE 417
Query: 406 DFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWA 465
++ RAA+ YA+ + S EE+ LKFI ++++D LR +L +KL + K Q +++ W
Sbjct: 418 EYERAATLYAET--LKSVEEVALKFIELNQKDVLRLYLWKKLRSYKSTMKIQKSLLVNWL 475
Query: 466 TELYLDKINRLLLEDDTAL--ENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGR 523
EL L K+N L ++ L EN + Q + REF L+ KD ++ L +YG+
Sbjct: 476 LELMLAKLNSLDEKERLELFPENVMQQRQQVQREFSTLLNQYKDEINREAAYNLANNYGK 535
Query: 524 VEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYETV 583
E+L+ A++ + ++H+++Q+ +KAL+ L + V + + A L+ ETV
Sbjct: 536 EEQLLQIATVMKDQSYIMHYWVQRENYEKALETLNE-GVSQETLIQHATALLTHRPNETV 594
Query: 584 ESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLY 643
W +L+ LIP+++ Y+ H E + I+YL + L DP +HN L +Y
Sbjct: 595 SIWERQTDLDVHALIPSLLSYNQRSHVPVEENAAIRYLRYVTGVLGCVDPSIHNTLFCIY 654
Query: 644 A--KQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHE 701
A ++S L+ +++ + G YD +RLCL+ R+ V I +M ++
Sbjct: 655 ACHSSSNESYLMNYIE-------QQGNHPLYDMDLGIRLCLQFNCRRSAVKILVLMKLYS 707
Query: 702 EAVALALQVDP-ELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLK 760
+ V LAL+ D ELA A+ E+D L+K LW +AK++ ++ G I++ + FL
Sbjct: 708 QGVELALEADDCELAATIANIPEEDVVLKKTLWQTIAKYMFSKKSG-----IKETLRFL- 761
Query: 761 ETDGLLKIEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDI 820
E +L++ +++ P+ +DD + +C LD K+IEQL E+ A+ A I+ +
Sbjct: 762 ENSEVLQLPELIRLLPEDIKLDDLSDNVCDELDHCMKRIEQLDFEIGQASEVAHEIQTNA 821
Query: 821 SALAQRYAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLI 880
+ RY V++ +E C C + + PF +FPC HAFH C++
Sbjct: 822 ENMRNRYIVLEPNESCWHCNQPLFS-----------------EPFVLFPCQHAFHRSCML 864
Query: 881 AHVTQCTNE 889
+ +E
Sbjct: 865 EKTYKLASE 873
>sp|P27801|PEP3_YEAST Vacuolar membrane protein PEP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEP3 PE=1 SV=1
Length = 918
Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 182/766 (23%), Positives = 354/766 (46%), Gaps = 92/766 (12%)
Query: 241 FAWLSGAGIYHGGLNFGAQRSSPNGDENF----VENKALLSYS---KLSEGAEAVKPGSM 293
FAW++ GI G L P NF +K LL++ ++ +K +
Sbjct: 207 FAWVTSNGIVFGDLKEKQMEKDP-ASNNFGKFLSSSKVLLNFELPDYQNDKDHLIK--DI 263
Query: 294 AVSEYHFLLLMGNKVKVVNRISEQI-----IEELQFDQTSDSISRGIIGLCSDATAGVFY 348
++ +H LLL N V +V++++ + I Q ++ + +GL D+ F+
Sbjct: 264 VLTAFHILLLRKNTVTMVSQLNNDVVFHETIPRHQLTGSNTDSNEKFLGLVRDSVKETFW 323
Query: 349 AYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALA-NCRDPLQRDQVYLVQAEAAFAT-KD 406
+ ++F++ + +E +W + + ++ AL+ + + V L +A F T KD
Sbjct: 324 CFSNINVFEIIIENEPNSVWNLLVRDNKFDKALSLKGLTVREIESVKLSKAMYLFHTAKD 383
Query: 407 FHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWAT 466
FH AA + + F EI L F+ + + + L L+++LDN+ K ++S+W
Sbjct: 384 FHSAAQTLGSMKDLSHFGEIALNFLQIKDYNDLNVILIKQLDNVPW--KSTQVVLSSWII 441
Query: 467 ELYLDKINRLLLEDDTALENRSSE---------YQSIMREFRAFLSDCKDVLDEATTMKL 517
++ ++N + L+ +T + E + E FL + LD T ++
Sbjct: 442 WNFMKQLNDIELKINTTKPASTDEDNLLNWNLNLKEKSNELTKFLESHLEKLDNETVYQI 501
Query: 518 LESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIML 577
+ R EL+ FASL + ++ +I QG ++L++L DL YK++ L++
Sbjct: 502 MSKQNRQNELLIFASLINDMKFLLSFWIDQGNWYESLKILLTINNH-DLVYKYSLILLLN 560
Query: 578 DAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNET---------HEVIKYLEFCVHRL 628
TV +WM +L+P KLIP ++++ + ++ + + YL++CV +
Sbjct: 561 SPEATVSTWMKIKDLDPNKLIPTILKFFTNWQNNSKLITNISEYPENYSLTYLKWCVREV 620
Query: 629 HNE-DPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRM 687
+P V+N +L + + +L KF K EN YD + LRL LK K+
Sbjct: 621 PKMCNPIVYNSILYMMITDPRNDMILENDIIKFMKSNENK----YDLNFQLRLSLKFKKT 676
Query: 688 RACVHIYGMMSMHEEAVALALQ---VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQE 744
+ + + +++ E+A+ LAL+ +D + + + +D LRK+LWL +AKH++
Sbjct: 677 KTSIFLLTRLNLFEDAIDLALKNNLIDDCKVIVNDEILIEDYKLRKRLWLKIAKHLLLSM 736
Query: 745 KGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQ 804
K + + + I L +++ +L I+D+LPFF ++ I + KE + L+++N ++ ++ +
Sbjct: 737 KDIDIKQLIRTI--LNDSNEILTIKDLLPFFNEYTTIANLKEELIKFLENHNMKMNEISE 794
Query: 805 EMNDATHGADNIRNDISALAQRYAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAP 864
++ ++ + I +IS + Y +++ + C C G+ ++ +
Sbjct: 795 DIINSKNLKVEINTEISKFNEIYRILEPGKSCDEC-------GKFLQIKK---------- 837
Query: 865 FYVFPCGHAFHAQCLIAHVTQCTNETQAEYILDLQKQLTLLGSEARKDANGVTTEDSITS 924
F VFPCGH FH C+I V +N+ QK L ++++ + N
Sbjct: 838 FIVFPCGHCFHWNCII-RVILNSNDYNLR-----QKTENFLKAKSKHNLND--------- 882
Query: 925 MTPTDKLRSQLDDAIASECPFCGDLMIREISLPFIAPEEAHQFASW 970
L++ I +C C D+ I +I P I+ +E + A W
Sbjct: 883 ----------LENIIVEKCGLCSDININKIDQP-ISIDET-ELAKW 916
>sp|Q7MH68|CAPP_VIBVY Phosphoenolpyruvate carboxylase OS=Vibrio vulnificus (strain YJ016)
GN=ppc PE=3 SV=2
Length = 877
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 11/65 (16%)
Query: 457 QITMISTW-ATELYLDKINRLLLE------DDT----ALENRSSEYQSIMREFRAFLSDC 505
++ ++S W A +LYL IN L+ E +DT A E+ Y++I+++ R LSD
Sbjct: 266 EVLLLSRWKAADLYLKDINELISELSMTKCNDTVRQLAGEDEHEPYRAILKQLRTLLSDT 325
Query: 506 KDVLD 510
K++LD
Sbjct: 326 KEILD 330
>sp|Q8DCN2|CAPP_VIBVU Phosphoenolpyruvate carboxylase OS=Vibrio vulnificus (strain CMCP6)
GN=ppc PE=3 SV=1
Length = 877
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 11/65 (16%)
Query: 457 QITMISTW-ATELYLDKINRLLLE------DDT----ALENRSSEYQSIMREFRAFLSDC 505
++ ++S W A +LYL IN L+ E +DT A E+ Y++I+++ R LSD
Sbjct: 266 EVLLLSRWKAADLYLKDINELISELSMTKCNDTVRQLAGEDEHEPYRAILKQLRTLLSDT 325
Query: 506 KDVLD 510
K++LD
Sbjct: 326 KEILD 330
>sp|Q82XV0|ISPG_NITEU 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC
14298) GN=ispG PE=3 SV=2
Length = 417
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 883 VTQCTNETQAEYILDLQK--QLTLLGSEARKDANGVTTEDSITSMTPTDKLRSQLDDAIA 940
V TN A+ + Q+ QL L GSE + T +S+ + +R++LDD +
Sbjct: 31 VQSMTNTDTADEVSTTQQVAQLALAGSELVR-----ITVNSMEAARAVAGIRARLDD-MG 84
Query: 941 SECPFCGDLMIREISLPFIAPEEAHQFASWEIKPQNLGNHR 981
P GD L PE A A + I P N+G+ R
Sbjct: 85 CHVPLVGDFHFNGHKLLTAYPECARALAKYRINPGNVGHGR 125
>sp|P39702|VPS8_YEAST Vacuolar protein sorting-associated protein 8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS8 PE=1 SV=2
Length = 1274
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 834 EDCGVCRRKILVAGRDYRMARGY---------ASVGPMAPFYVFPCGHAFHAQCL 879
+DC +C +KI AG D + + SV P +F C H FH CL
Sbjct: 1196 DDCEICGKKIWGAGLDPLLFLAWENVQRHQDMISVDLKTPLVIFKCHHGFHQTCL 1250
>sp|Q618H8|VPS41_CAEBR Vacuolar protein sorting-associated protein 41 homolog
OS=Caenorhabditis briggsae GN=vps-41 PE=3 SV=1
Length = 898
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 771 ILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDAT-HGADNIRNDISALAQRYAV 829
I+ PD I + EA+ L D+ +E L+Q D+T + + N++ + +
Sbjct: 770 IMDKLPDDVDIPNLSEALEKLLTDFTNYVE-LQQCCYDSTLNDLHVLTNNLMLASDKSVS 828
Query: 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQC 878
+ C +C + I+ G+D + R + + VF CGH FH C
Sbjct: 829 VSLMTRCSLCSQVIMNTGQDM-IPRKFNDIK------VFKCGHIFHLTC 870
>sp|Q54YP4|VPS11_DICDI Vacuolar protein sorting-associated protein 11 homolog
OS=Dictyostelium discoideum GN=vps11 PE=3 SV=1
Length = 952
Score = 37.0 bits (84), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 55/288 (19%), Positives = 111/288 (38%), Gaps = 56/288 (19%)
Query: 617 VIKYLEFCVHRLHNEDPGVHNLLLSLYAK----QEDDSALLRFLQCKFGKGRENGPEFFY 672
++K+LE+ V + +NE ++N LL LY + Q DD + R + EF
Sbjct: 652 LVKFLEYMVQQGNNESSLIYNTLLELYLRDDVNQTDDERIKR---------KAKAYEFLT 702
Query: 673 DPK------YALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVDPELAMAEADKVEDDE 726
+PK +AL L +++Y + + E + ++ + + +A K +
Sbjct: 703 NPKSKFDQDHALILVQVHNWKEGVLYLYEKLELFNEIIEYHMENNDYDGLIKACKRYGVK 762
Query: 727 DLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKE 786
D LW+ ++ + E I L D E+++P ++ K
Sbjct: 763 D--PNLWVRALSFFSTNKQDCQDE----IIEVLTNIDK----ENLIPPLLVIQILSQNKN 812
Query: 787 AICSSLDDY-----NKQIEQLKQEMNDATHGAD---NIRNDISALAQRYAVIDRDEDCGV 838
+ + DY +++ +Q+ ++ AD +R++I+ L + + + C
Sbjct: 813 TTLAVIKDYISRRLSQETQQIDKDYTQIRQYADETEKMRHEINELRTNSKIFQQTK-CIA 871
Query: 839 CRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886
C + + P F C H+FH +CL + +C
Sbjct: 872 CLLALDL------------------PSVHFLCQHSFHQRCLGENEREC 901
>sp|Q8R3P2|DTX2_MOUSE Probable E3 ubiquitin-protein ligase DTX2 OS=Mus musculus GN=Dtx2
PE=1 SV=2
Length = 619
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIA 881
+ +EDC +C K+ VA M A +GPM + C HAFH CL+A
Sbjct: 403 VAPEEDCIICMEKLAVASGYSDMTDSKA-LGPMVVGRLTKCSHAFHLLCLLA 453
>sp|Q86UW9|DTX2_HUMAN Probable E3 ubiquitin-protein ligase DTX2 OS=Homo sapiens GN=DTX2
PE=1 SV=3
Length = 622
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIA 881
+ DEDC +C K+ A Y ++G +A ++ C HAFH CL+A
Sbjct: 406 VPPDEDCIICMEKLSTA-SGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCLLA 456
>sp|P93043|VPS41_ARATH Vacuolar protein sorting-associated protein 41 homolog
OS=Arabidopsis thaliana GN=VPS41 PE=3 SV=3
Length = 980
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 85/399 (21%), Positives = 148/399 (37%), Gaps = 91/399 (22%)
Query: 538 EIVVHHYIQQGEAKKALQM---LRKPAVPIDLQYKFA---------PDLIMLDAYETVES 585
E + Y+ G+ +KA + L KP V D K++ L++LD
Sbjct: 554 EALAELYVIDGQYQKAFSLYADLLKPEV-FDFIEKYSLHEAIRGKVVQLMLLDCKRATVL 612
Query: 586 WMTTNNL-NPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRL-------------HNE 631
++ +L P +++P +++ P +V+K + C R H+
Sbjct: 613 FIQNRDLIPPSEVVPQLLKAGKNP-------QVLKAGKKCDSRYYLYLYLHALFEVSHDT 665
Query: 632 DPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACV 691
H++ + LYA + D LL FL+ Y + A LC+K+ +R V
Sbjct: 666 GKDFHDMQVELYA-EYDTKMLLPFLRS----------SQHYKLEKAYELCVKKDFLREQV 714
Query: 692 HIYGMMSMHEEAVALALQV--DPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKR 749
+ G M ++A+A+ + D E A+ DD+ LW + K + + +
Sbjct: 715 FVLGRMGNAKQALAVIINKLGDIEEAVEFVSMQHDDD-----LWEELIKQCLNKPEMVG- 768
Query: 750 ENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDA 809
L+ T G L I+ P+ I ++ + + DY + L+ ND
Sbjct: 769 -------LLLEHTVGNLDPLYIVNMVPNGLEIPRLRDRLVKIVTDYRTET-SLRHGCNDI 820
Query: 810 ----------------------THGADNIR-----NDISALAQRYAVIDRDEDCGVCRRK 842
+H D+ R N+ S+ +QR V+D+ + K
Sbjct: 821 LKTDIVNLLVKCFNEARRGVCLSHEDDDSRAKREDNNRSSFSQRM-VVDKSLSIKMTEVK 879
Query: 843 ILVAGRDYRMARGYASVGPMA-PFYVFPCGHAFHAQCLI 880
G D R + V VF C HA+H CL+
Sbjct: 880 SKTRG-DTRCCMCFDPVSIRGDTVVVFFCCHAYHETCLM 917
>sp|Q99MV7|RNF17_MOUSE RING finger protein 17 OS=Mus musculus GN=Rnf17 PE=1 SV=2
Length = 1640
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 20/92 (21%)
Query: 836 CGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTNETQAEYI 895
C C RK+ VA D+ + FPCGHAF CL+A E
Sbjct: 30 CTRCGRKVSVASGDH---------------HKFPCGHAFCELCLLA-----PQEYTTSKC 69
Query: 896 LDLQKQLTLLGSEARKDANGVTTEDSITSMTP 927
D + T+ ++ +G EDS P
Sbjct: 70 TDCEVHTTVSMNQGHYPVDGFIEEDSSLEALP 101
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 30/229 (13%)
Query: 750 ENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQ-------- 801
+N+RK +++L ETD + + D F D +E I SLD N ++Q
Sbjct: 67 QNLRKELSYLSETDWMYESLDKKAAHKFFTNPDRNREDILESLDRENSFLDQKLMEEKMD 126
Query: 802 -------------LKQEMNDATHGAD--NIRNDISALAQRYAVIDRDEDCGVCRRKILVA 846
L ++ + THG ++ + S A++ + D D GV + +L
Sbjct: 127 QQLKANPNEINGVLSNKIAELTHGLSEMDVSKESSCTARKGVITSLDGDRGVIDKDVLFE 186
Query: 847 GRDYRMARGYASVGPMAPFYVFPCGHAFH---AQCLIAHVTQCTNETQAEYILDLQK--Q 901
+ VG + + F G A + ++ H + T++ + E +D K +
Sbjct: 187 TKVAEDIILDLHVGCVVEYLTFTTGEAMRVVKVKSILEHSWEDTSQKEIEKAVDNLKNEK 246
Query: 902 LTLLGSEARKDANGVTTE--DSITSMTPTDKLRSQLDDAIASECPFCGD 948
T +E R ++ SI T +L +LD+ + P GD
Sbjct: 247 PTFFNTETRSVLGLISQRLASSIDVETEYGQLTVELDNIEMNFIPTNGD 295
>sp|Q9P6N4|PEP5_SCHPO Vacuolar membrane protein pep5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pep5 PE=3 SV=1
Length = 906
Score = 33.9 bits (76), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 19/106 (17%)
Query: 781 IDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDCGVCR 840
++ +++ S LD+Y + I + + + + I + +S L R A + ++ C C
Sbjct: 817 LEHISDSMQSVLDNYRESISKQNEAIEMGKRDIEEITSQLSILRTR-AFVVQESKCSTC- 874
Query: 841 RKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886
G D + P F CGH++H +C+ +C
Sbjct: 875 ------GIDLEL-----------PMVHFRCGHSYHQRCVEDECIRC 903
>sp|Q9R049|AMFR_MOUSE E3 ubiquitin-protein ligase AMFR OS=Mus musculus GN=Amfr PE=1 SV=2
Length = 643
Score = 33.9 bits (76), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 30/134 (22%)
Query: 798 QIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDE------DCGVCRRKILVAGRDYR 851
Q+ L E+ N + + R+AV +E DC +C + A +
Sbjct: 297 QLRYLFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARK--- 353
Query: 852 MARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTNETQAEYILDLQKQLTLLGSEARK 911
PCGH FH CL + + Q T+ L++ GS AR+
Sbjct: 354 ----------------LPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIAD-----GSRARE 392
Query: 912 DANGVTTEDSITSM 925
D G ++++ +
Sbjct: 393 DHQGENLDENLVPV 406
>sp|Q54BC6|PSMD2_DICDI 26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium
discoideum GN=psmD2 PE=1 SV=1
Length = 893
Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 687 MRACVHIYGMMSMHEEAVALALQV-DPELAMAEADKVEDDEDLRKKLWLMVAKHVI 741
++ CV IY M + +A+ +A+++ DPEL VE+++ + ++L +VA+ I
Sbjct: 259 LKVCVEIYIKMKQYPDALRVAMKISDPELITEIFKLVENNKSILQQLGFLVARQKI 314
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 366,454,188
Number of Sequences: 539616
Number of extensions: 15671369
Number of successful extensions: 42174
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 42076
Number of HSP's gapped (non-prelim): 50
length of query: 987
length of database: 191,569,459
effective HSP length: 127
effective length of query: 860
effective length of database: 123,038,227
effective search space: 105812875220
effective search space used: 105812875220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)