Query 001978
Match_columns 987
No_of_seqs 284 out of 819
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 13:44:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2034 Vacuolar sorting prote 100.0 2E-138 5E-143 1190.7 58.7 878 4-971 22-911 (911)
2 KOG2066 Vacuolar assembly/sort 100.0 1.9E-63 4.2E-68 564.0 45.8 710 22-886 40-825 (846)
3 KOG2114 Vacuolar assembly/sort 100.0 1.5E-45 3.2E-50 420.6 58.9 743 23-892 27-883 (933)
4 KOG2063 Vacuolar assembly/sort 100.0 2E-34 4.4E-39 343.1 44.5 531 289-882 243-866 (877)
5 PF05131 Pep3_Vps18: Pep3/Vps1 100.0 2.1E-30 4.6E-35 251.6 16.4 146 248-404 1-147 (147)
6 PF10367 Vps39_2: Vacuolar sor 99.7 1.2E-16 2.5E-21 150.1 7.4 107 757-880 2-108 (109)
7 smart00299 CLH Clathrin heavy 99.6 7E-16 1.5E-20 151.7 11.3 130 591-744 7-139 (140)
8 PF00637 Clathrin: Region in C 99.4 4.8E-14 1E-18 139.2 -1.5 134 590-745 6-140 (143)
9 KOG2079 Vacuolar assembly/sort 98.8 1.3E-07 2.9E-12 113.2 19.5 327 521-886 788-1171(1206)
10 KOG0985 Vesicle coat protein c 98.5 7.8E-06 1.7E-10 97.3 21.0 209 499-743 890-1117(1666)
11 KOG3617 WD40 and TPR repeat-co 98.4 2.3E-05 5E-10 91.7 22.3 253 369-743 834-1093(1416)
12 KOG0985 Vesicle coat protein c 98.1 0.0015 3.3E-08 78.6 28.0 367 368-794 1055-1457(1666)
13 KOG2114 Vacuolar assembly/sort 97.9 0.00016 3.5E-09 85.8 15.8 169 540-722 340-516 (933)
14 PF04053 Coatomer_WDAD: Coatom 97.8 0.0028 6.1E-08 73.9 23.9 137 31-200 79-223 (443)
15 cd00200 WD40 WD40 domain, foun 97.8 0.031 6.6E-07 59.7 30.0 151 21-199 9-164 (289)
16 smart00299 CLH Clathrin heavy 97.6 0.002 4.3E-08 63.2 15.1 129 420-575 7-136 (140)
17 cd00200 WD40 WD40 domain, foun 97.6 0.0038 8.3E-08 66.7 18.7 150 21-197 135-288 (289)
18 PF00780 CNH: CNH domain; Int 97.5 0.026 5.6E-07 62.0 23.6 244 26-324 2-265 (275)
19 KOG1538 Uncharacterized conser 97.4 0.012 2.5E-07 68.2 20.2 66 524-589 763-830 (1081)
20 KOG2048 WD40 repeat protein [G 97.2 0.0075 1.6E-07 70.3 15.5 162 24-199 433-602 (691)
21 KOG0289 mRNA splicing factor [ 97.0 0.013 2.9E-07 65.0 14.8 132 22-174 348-485 (506)
22 PF13639 zf-RING_2: Ring finge 96.9 0.00044 9.5E-09 53.1 1.9 35 834-884 1-35 (44)
23 PF04053 Coatomer_WDAD: Coatom 96.9 0.56 1.2E-05 55.0 27.9 77 334-413 236-317 (443)
24 KOG2079 Vacuolar assembly/sort 96.8 0.56 1.2E-05 58.2 27.4 117 22-147 90-206 (1206)
25 KOG0305 Anaphase promoting com 96.6 0.36 7.8E-06 56.4 22.8 142 30-199 187-330 (484)
26 TIGR02917 PEP_TPR_lipo putativ 96.5 1.1 2.3E-05 57.2 29.8 47 371-417 441-491 (899)
27 KOG1446 Histone H3 (Lys4) meth 96.5 0.15 3.2E-06 54.9 17.5 151 23-199 144-302 (311)
28 KOG0315 G-protein beta subunit 96.5 0.14 3E-06 53.4 16.4 154 24-199 88-244 (311)
29 PLN03077 Protein ECB2; Provisi 96.4 1.7 3.7E-05 56.0 30.5 139 516-658 296-449 (857)
30 TIGR02917 PEP_TPR_lipo putativ 96.4 1.4 3.1E-05 56.1 29.6 137 517-658 474-626 (899)
31 KOG0289 mRNA splicing factor [ 96.3 0.17 3.8E-06 56.5 16.8 113 65-198 303-417 (506)
32 KOG1587 Cytoplasmic dynein int 96.2 0.14 2.9E-06 61.3 17.0 148 21-176 242-409 (555)
33 KOG1036 Mitotic spindle checkp 96.2 0.1 2.2E-06 56.0 14.1 143 22-189 136-293 (323)
34 KOG3621 WD40 repeat-containing 96.2 1.6 3.4E-05 52.1 24.8 115 22-148 36-156 (726)
35 PLN03218 maturation of RBCL 1; 96.2 2.7 6E-05 54.7 29.7 270 362-658 371-674 (1060)
36 PLN03077 Protein ECB2; Provisi 96.1 1.4 3E-05 56.9 27.3 119 537-659 527-651 (857)
37 PF12861 zf-Apc11: Anaphase-pr 96.1 0.0053 1.2E-07 53.4 3.5 48 830-883 18-65 (85)
38 KOG1941 Acetylcholine receptor 96.1 0.098 2.1E-06 57.3 13.6 35 834-883 366-400 (518)
39 PLN03081 pentatricopeptide (PP 96.0 0.89 1.9E-05 57.1 24.0 305 371-709 133-487 (697)
40 PHA02929 N1R/p28-like protein; 95.9 0.015 3.3E-07 61.4 6.6 40 831-882 172-212 (238)
41 PF00637 Clathrin: Region in C 95.9 0.00024 5.1E-09 69.9 -6.6 133 420-578 7-139 (143)
42 KOG0270 WD40 repeat-containing 95.9 0.14 3E-06 57.4 13.9 144 29-197 254-401 (463)
43 PLN03218 maturation of RBCL 1; 95.9 3.2 6.9E-05 54.1 28.5 301 367-709 412-744 (1060)
44 PF13923 zf-C3HC4_2: Zinc fing 95.8 0.003 6.5E-08 47.1 0.7 21 864-884 11-31 (39)
45 KOG0646 WD40 repeat protein [G 95.8 0.21 4.6E-06 56.3 15.1 71 17-95 77-150 (476)
46 KOG2066 Vacuolar assembly/sort 95.8 0.44 9.6E-06 57.3 18.3 79 495-575 622-701 (846)
47 PF12678 zf-rbx1: RING-H2 zinc 95.6 0.0047 1E-07 53.1 1.1 45 833-883 19-63 (73)
48 PLN00181 protein SPA1-RELATED; 95.6 0.48 1E-05 60.4 19.5 150 22-198 533-688 (793)
49 PF08662 eIF2A: Eukaryotic tra 95.6 0.67 1.4E-05 48.1 17.1 132 41-200 39-181 (194)
50 KOG0316 Conserved WD40 repeat- 95.5 0.24 5.2E-06 51.3 13.1 157 17-200 141-299 (307)
51 TIGR00990 3a0801s09 mitochondr 95.5 3.1 6.6E-05 51.5 25.9 134 520-658 343-492 (615)
52 cd00162 RING RING-finger (Real 95.5 0.011 2.4E-07 44.9 2.8 31 835-883 1-31 (45)
53 KOG1539 WD repeat protein [Gen 95.5 0.41 8.8E-06 57.7 16.6 131 20-173 75-210 (910)
54 PRK15174 Vi polysaccharide exp 95.3 2.8 6.1E-05 52.2 24.3 270 365-658 46-343 (656)
55 KOG2106 Uncharacterized conser 95.2 1 2.2E-05 51.5 17.7 162 16-198 324-519 (626)
56 PLN00181 protein SPA1-RELATED; 95.1 1.2 2.5E-05 56.9 20.7 156 21-199 575-737 (793)
57 PF10366 Vps39_1: Vacuolar sor 95.1 0.052 1.1E-06 50.5 6.2 49 496-545 15-63 (108)
58 smart00184 RING Ring finger. E 94.9 0.024 5.3E-07 41.3 2.9 21 864-884 10-30 (39)
59 PLN03081 pentatricopeptide (PP 94.6 9.8 0.00021 47.8 26.8 307 369-707 95-449 (697)
60 KOG1539 WD repeat protein [Gen 94.5 0.29 6.2E-06 58.9 11.7 150 24-198 453-604 (910)
61 PTZ00421 coronin; Provisional 94.5 1.9 4.2E-05 51.4 19.0 154 25-199 34-197 (493)
62 PRK11447 cellulose synthase su 94.5 5.1 0.00011 53.5 25.0 49 370-418 360-412 (1157)
63 KOG1273 WD40 repeat protein [G 94.4 1.8 3.9E-05 46.8 16.2 149 23-199 67-224 (405)
64 KOG3617 WD40 and TPR repeat-co 94.4 1.1 2.5E-05 54.0 16.1 71 517-587 809-882 (1416)
65 KOG0315 G-protein beta subunit 94.3 1.5 3.4E-05 45.9 15.1 149 24-198 43-195 (311)
66 KOG2055 WD40 repeat protein [G 94.3 0.9 2E-05 51.4 14.5 155 1-174 233-394 (514)
67 PTZ00420 coronin; Provisional 94.3 4.8 0.0001 48.7 21.9 116 21-146 74-197 (568)
68 KOG3616 Selective LIM binding 94.3 1.4 3E-05 52.5 16.2 210 366-595 1110-1358(1636)
69 KOG0293 WD40 repeat-containing 94.3 0.19 4E-06 55.9 8.9 123 7-141 380-508 (519)
70 KOG1274 WD40 repeat protein [G 94.2 1.9 4.2E-05 52.8 17.7 151 23-199 98-261 (933)
71 PF00097 zf-C3HC4: Zinc finger 94.1 0.016 3.4E-07 43.6 0.2 21 864-884 11-31 (41)
72 KOG0310 Conserved WD40 repeat- 94.0 15 0.00032 42.3 30.3 161 13-199 60-226 (487)
73 KOG2063 Vacuolar assembly/sort 93.9 0.5 1.1E-05 58.9 12.8 187 425-627 596-795 (877)
74 PRK11447 cellulose synthase su 93.9 32 0.0007 46.0 33.7 49 370-418 278-330 (1157)
75 PTZ00421 coronin; Provisional 93.9 4.7 0.0001 48.2 20.6 112 22-146 76-198 (493)
76 KOG0284 Polyadenylation factor 93.9 0.72 1.6E-05 51.4 12.4 172 7-208 127-301 (464)
77 PF10366 Vps39_1: Vacuolar sor 93.7 0.095 2.1E-06 48.8 4.6 62 637-709 3-64 (108)
78 KOG4628 Predicted E3 ubiquitin 93.6 0.23 4.9E-06 55.2 8.1 34 835-884 231-264 (348)
79 KOG0266 WD40 repeat-containing 93.4 2.5 5.5E-05 50.1 17.4 152 22-198 160-316 (456)
80 COG5540 RING-finger-containing 93.4 0.053 1.2E-06 57.5 2.8 37 832-884 322-358 (374)
81 KOG0643 Translation initiation 93.2 4.7 0.0001 42.9 16.3 152 22-198 53-220 (327)
82 KOG0646 WD40 repeat protein [G 93.1 0.83 1.8E-05 51.7 11.6 131 23-175 176-329 (476)
83 PRK11788 tetratricopeptide rep 93.0 5.5 0.00012 45.7 19.3 49 370-418 78-134 (389)
84 PF14634 zf-RING_5: zinc-RING 92.9 0.083 1.8E-06 40.5 2.5 33 835-883 1-33 (44)
85 COG5243 HRD1 HRD ubiquitin lig 92.8 0.3 6.6E-06 53.3 7.4 96 776-883 236-331 (491)
86 KOG2048 WD40 repeat protein [G 92.8 6 0.00013 47.1 18.3 158 21-200 25-184 (691)
87 KOG0294 WD40 repeat-containing 92.7 2.7 5.9E-05 45.6 14.1 91 21-120 43-137 (362)
88 KOG1734 Predicted RING-contain 92.5 0.045 9.7E-07 57.1 0.7 43 832-883 223-265 (328)
89 KOG1920 IkappaB kinase complex 92.5 1.4 3.1E-05 55.5 13.4 31 388-418 936-966 (1265)
90 KOG0271 Notchless-like WD40 re 92.5 6 0.00013 44.1 16.6 155 22-199 116-275 (480)
91 KOG2055 WD40 repeat protein [G 92.4 0.55 1.2E-05 53.0 8.9 142 24-190 306-455 (514)
92 KOG4445 Uncharacterized conser 92.3 0.11 2.4E-06 55.1 3.3 54 832-902 114-167 (368)
93 COG5194 APC11 Component of SCF 92.2 0.14 3.1E-06 43.4 3.1 48 833-883 20-67 (88)
94 KOG0291 WD40-repeat-containing 92.0 8.7 0.00019 46.4 18.4 156 15-198 259-420 (893)
95 KOG0273 Beta-transducin family 92.0 4.5 9.7E-05 46.2 15.3 151 23-200 237-389 (524)
96 KOG0978 E3 ubiquitin ligase in 91.8 0.32 7E-06 58.6 6.9 20 864-883 655-674 (698)
97 KOG1920 IkappaB kinase complex 91.8 49 0.0011 42.6 25.5 64 681-744 949-1013(1265)
98 KOG0278 Serine/threonine kinas 91.7 3.3 7.1E-05 43.5 12.9 144 28-195 152-302 (334)
99 KOG1446 Histone H3 (Lys4) meth 91.6 24 0.00052 38.6 20.2 165 15-199 8-216 (311)
100 TIGR00570 cdk7 CDK-activating 91.4 0.15 3.2E-06 55.8 3.2 37 833-883 3-39 (309)
101 PRK11788 tetratricopeptide rep 91.3 17 0.00038 41.6 20.6 48 371-418 45-96 (389)
102 KOG0318 WD40 repeat stress pro 91.2 12 0.00027 43.3 17.9 128 23-174 365-496 (603)
103 KOG0320 Predicted E3 ubiquitin 91.1 0.15 3.2E-06 50.5 2.4 16 868-883 149-164 (187)
104 KOG0279 G protein beta subunit 91.0 11 0.00024 40.5 16.2 149 24-198 108-260 (315)
105 KOG0283 WD40 repeat-containing 91.0 3.3 7.1E-05 50.3 13.9 151 22-199 410-575 (712)
106 PRK14720 transcript cleavage f 90.9 16 0.00034 46.5 20.4 254 369-684 39-303 (906)
107 KOG2076 RNA polymerase III tra 90.8 32 0.00069 42.9 21.9 80 613-709 429-508 (895)
108 PTZ00420 coronin; Provisional 90.1 18 0.00039 43.9 19.5 70 22-100 126-199 (568)
109 PRK10049 pgaA outer membrane p 90.1 49 0.0011 42.1 24.6 47 371-418 59-110 (765)
110 smart00504 Ubox Modified RING 89.9 0.18 3.9E-06 41.8 1.7 31 835-884 3-33 (63)
111 KOG1274 WD40 repeat protein [G 89.9 7.3 0.00016 48.0 15.5 146 24-198 18-166 (933)
112 PF08596 Lgl_C: Lethal giant l 89.6 2.9 6.2E-05 48.4 11.8 85 21-147 86-174 (395)
113 KOG0275 Conserved WD40 repeat- 89.5 12 0.00026 40.7 15.0 149 24-198 309-465 (508)
114 KOG0647 mRNA export protein (c 89.3 3.7 7.9E-05 44.4 11.1 147 22-198 157-317 (347)
115 KOG4714 Nucleoporin [Nuclear s 89.2 1.1 2.4E-05 47.3 7.1 71 20-98 178-254 (319)
116 KOG2076 RNA polymerase III tra 89.2 22 0.00049 44.1 19.0 25 394-418 142-166 (895)
117 KOG2879 Predicted E3 ubiquitin 89.2 0.2 4.3E-06 52.9 1.7 36 830-883 236-271 (298)
118 KOG2321 WD40 repeat protein [G 89.2 5.5 0.00012 46.5 13.2 121 34-175 148-281 (703)
119 KOG4340 Uncharacterized conser 89.2 12 0.00026 40.5 14.8 70 360-431 9-83 (459)
120 KOG0288 WD40 repeat protein Ti 89.1 6.8 0.00015 44.1 13.4 117 39-175 320-441 (459)
121 PF14835 zf-RING_6: zf-RING of 88.9 0.073 1.6E-06 43.6 -1.3 31 833-881 7-37 (65)
122 KOG0266 WD40 repeat-containing 88.8 15 0.00032 43.6 17.5 152 22-197 204-361 (456)
123 KOG2321 WD40 repeat protein [G 88.4 7.9 0.00017 45.3 13.8 107 23-137 179-293 (703)
124 KOG1188 WD40 repeat protein [G 88.3 9.5 0.00021 42.0 13.6 175 6-197 53-239 (376)
125 KOG1493 Anaphase-promoting com 88.3 0.12 2.6E-06 43.5 -0.5 48 830-883 17-64 (84)
126 PF13432 TPR_16: Tetratricopep 88.2 1.1 2.3E-05 37.1 5.3 49 370-418 6-58 (65)
127 KOG2445 Nuclear pore complex c 88.2 22 0.00049 38.7 16.1 164 22-198 14-256 (361)
128 KOG0291 WD40-repeat-containing 88.0 26 0.00056 42.6 17.9 154 21-200 55-219 (893)
129 PF08553 VID27: VID27 cytoplas 87.9 7 0.00015 48.8 14.0 132 39-197 502-644 (794)
130 KOG0316 Conserved WD40 repeat- 87.9 39 0.00084 35.6 17.5 88 24-121 22-112 (307)
131 PF14559 TPR_19: Tetratricopep 87.8 0.57 1.2E-05 39.0 3.4 48 371-418 1-52 (68)
132 KOG0317 Predicted E3 ubiquitin 87.7 0.36 7.9E-06 51.5 2.6 37 828-883 234-270 (293)
133 PF08662 eIF2A: Eukaryotic tra 87.7 9.8 0.00021 39.4 13.2 110 71-199 11-132 (194)
134 KOG2041 WD40 repeat protein [G 87.6 4.6 0.0001 48.2 11.5 89 515-603 859-951 (1189)
135 KOG2110 Uncharacterized conser 87.6 8.2 0.00018 42.9 12.7 120 10-147 119-249 (391)
136 KOG0305 Anaphase promoting com 87.6 3.6 7.7E-05 48.3 10.7 132 21-175 260-397 (484)
137 KOG0286 G-protein beta subunit 87.5 18 0.0004 39.1 14.8 155 1-174 117-282 (343)
138 KOG1840 Kinesin light chain [C 87.4 18 0.00039 43.1 16.6 52 367-418 205-268 (508)
139 KOG0318 WD40 repeat stress pro 87.2 13 0.00029 43.1 14.5 133 24-175 446-583 (603)
140 PF07035 Mic1: Colon cancer-as 87.0 9.2 0.0002 38.5 11.9 97 617-722 13-115 (167)
141 KOG0276 Vesicle coat complex C 86.9 77 0.0017 38.0 32.9 104 24-142 186-295 (794)
142 PF12569 NARP1: NMDA receptor- 86.9 18 0.0004 43.4 16.5 50 369-418 12-65 (517)
143 PHA02926 zinc finger-like prot 86.9 0.95 2.1E-05 46.7 4.9 41 831-883 168-210 (242)
144 KOG0295 WD40 repeat-containing 86.9 29 0.00063 38.7 16.3 149 30-198 204-362 (406)
145 PF13920 zf-C3HC4_3: Zinc fing 86.8 0.35 7.6E-06 38.1 1.5 32 833-883 2-34 (50)
146 PF14446 Prok-RING_1: Prokaryo 86.7 0.39 8.4E-06 38.2 1.5 35 832-882 4-39 (54)
147 PF12816 Vps8: Golgi CORVET co 86.6 2.2 4.7E-05 44.4 7.6 73 629-709 18-91 (196)
148 KOG0264 Nucleosome remodeling 86.4 11 0.00024 42.8 13.2 150 33-199 192-346 (422)
149 KOG0288 WD40 repeat protein Ti 86.3 4 8.6E-05 45.9 9.6 95 22-120 342-441 (459)
150 TIGR00990 3a0801s09 mitochondr 86.2 15 0.00032 45.5 16.0 48 371-418 341-392 (615)
151 PRK05137 tolB translocation pr 85.7 29 0.00063 40.8 17.5 143 31-198 166-320 (435)
152 PRK03629 tolB translocation pr 85.0 38 0.00083 39.8 18.0 143 30-197 163-316 (429)
153 PF14779 BBS1: Ciliary BBSome 84.9 1.8 3.9E-05 46.5 6.0 85 5-95 161-255 (257)
154 PLN03208 E3 ubiquitin-protein 84.9 0.72 1.6E-05 47.0 2.9 35 830-883 15-49 (193)
155 KOG0639 Transducin-like enhanc 84.7 4.7 0.0001 46.3 9.3 151 11-190 541-694 (705)
156 KOG0306 WD40-repeat-containing 84.7 1.1E+02 0.0023 37.6 21.4 291 4-323 88-411 (888)
157 KOG4378 Nuclear protein COP1 [ 84.2 12 0.00025 43.2 12.1 120 35-176 181-304 (673)
158 KOG0271 Notchless-like WD40 re 84.1 16 0.00036 40.8 12.8 98 65-177 115-212 (480)
159 PF12895 Apc3: Anaphase-promot 84.0 2 4.4E-05 37.6 5.2 47 370-416 34-83 (84)
160 PF03178 CPSF_A: CPSF A subuni 83.9 74 0.0016 35.6 19.1 161 21-199 88-264 (321)
161 COG4946 Uncharacterized protei 83.8 9.3 0.0002 43.7 11.1 94 20-121 360-454 (668)
162 KOG1036 Mitotic spindle checkp 83.8 17 0.00038 39.5 12.7 112 65-200 13-124 (323)
163 PF13445 zf-RING_UBOX: RING-ty 83.5 0.64 1.4E-05 35.4 1.4 21 864-884 13-33 (43)
164 KOG1407 WD40 repeat protein [F 83.5 26 0.00056 37.4 13.4 136 15-174 144-281 (313)
165 PF08450 SGL: SMP-30/Gluconola 83.5 67 0.0014 34.3 19.5 162 25-201 43-214 (246)
166 PF07569 Hira: TUP1-like enhan 83.2 4.3 9.4E-05 43.0 8.1 73 23-99 14-96 (219)
167 PF08450 SGL: SMP-30/Gluconola 83.2 44 0.00096 35.6 16.3 79 30-119 11-94 (246)
168 PF09943 DUF2175: Uncharacteri 82.9 0.71 1.5E-05 41.7 1.7 37 835-888 4-40 (101)
169 COG3063 PilF Tfp pilus assembl 82.5 4.7 0.0001 42.3 7.7 79 375-456 90-175 (250)
170 KOG0270 WD40 repeat-containing 82.5 19 0.00041 41.1 12.8 114 21-147 286-405 (463)
171 KOG4649 PQQ (pyrrolo-quinoline 82.5 66 0.0014 34.5 15.9 110 25-148 57-167 (354)
172 TIGR03300 assembly_YfgL outer 82.5 27 0.00058 40.1 15.1 138 25-197 235-376 (377)
173 TIGR00540 hemY_coli hemY prote 82.4 1.1E+02 0.0023 35.8 21.5 111 540-658 269-395 (409)
174 KOG0282 mRNA splicing factor [ 82.3 6.1 0.00013 45.2 9.0 149 24-199 217-371 (503)
175 PF11793 FANCL_C: FANCL C-term 82.1 0.21 4.4E-06 42.6 -1.9 37 833-883 2-41 (70)
176 TIGR02800 propeller_TolB tol-p 82.0 56 0.0012 37.9 17.8 142 32-198 202-352 (417)
177 KOG1407 WD40 repeat protein [F 81.7 54 0.0012 35.2 15.0 136 29-192 75-211 (313)
178 TIGR03866 PQQ_ABC_repeats PQQ- 81.4 48 0.001 35.7 16.1 107 24-147 75-188 (300)
179 PRK15174 Vi polysaccharide exp 81.1 1.6E+02 0.0034 36.8 27.4 320 371-741 86-443 (656)
180 KOG0828 Predicted E3 ubiquitin 80.8 0.65 1.4E-05 52.7 0.8 50 829-883 567-619 (636)
181 KOG0307 Vesicle coat complex C 80.7 3.9 8.5E-05 51.4 7.5 165 17-199 112-283 (1049)
182 PF15227 zf-C3HC4_4: zinc fing 80.7 0.85 1.8E-05 34.6 1.2 19 866-884 12-30 (42)
183 KOG0641 WD40 repeat protein [G 80.4 78 0.0017 33.0 15.5 116 22-148 184-305 (350)
184 PRK04922 tolB translocation pr 80.2 67 0.0014 37.7 17.6 114 22-147 204-325 (433)
185 PF13371 TPR_9: Tetratricopept 80.0 2.1 4.6E-05 36.1 3.6 49 370-418 4-56 (73)
186 PRK05137 tolB translocation pr 79.8 67 0.0015 37.7 17.5 154 20-198 200-364 (435)
187 KOG0307 Vesicle coat complex C 79.1 16 0.00034 46.3 11.8 201 33-256 82-294 (1049)
188 KOG2280 Vacuolar assembly/sort 79.0 1.7E+02 0.0037 36.1 32.6 90 24-119 86-177 (829)
189 KOG3616 Selective LIM binding 79.0 15 0.00032 44.3 10.9 76 365-443 795-873 (1636)
190 PF13838 Clathrin_H_link: Clat 78.9 8.9 0.00019 32.1 6.7 54 391-444 6-64 (66)
191 KOG0263 Transcription initiati 78.9 36 0.00079 41.4 14.3 106 23-144 537-647 (707)
192 KOG0268 Sof1-like rRNA process 78.6 14 0.00031 41.0 10.0 156 18-200 184-345 (433)
193 PF09976 TPR_21: Tetratricopep 78.5 3.7 8E-05 40.2 5.3 48 370-417 57-111 (145)
194 KOG0268 Sof1-like rRNA process 78.2 19 0.00042 40.0 10.9 60 11-75 48-119 (433)
195 KOG0296 Angio-associated migra 78.2 19 0.0004 40.2 10.8 146 31-200 202-356 (399)
196 PF08309 LVIVD: LVIVD repeat; 78.2 7.9 0.00017 29.4 5.7 33 22-54 2-35 (42)
197 KOG1524 WD40 repeat-containing 78.1 93 0.002 36.6 16.5 113 21-145 145-285 (737)
198 TIGR00599 rad18 DNA repair pro 78.0 1.3 2.9E-05 50.6 2.2 35 830-883 23-57 (397)
199 KOG2930 SCF ubiquitin ligase, 77.4 2.1 4.5E-05 38.5 2.8 47 834-883 47-94 (114)
200 KOG0294 WD40 repeat-containing 77.2 84 0.0018 34.6 15.0 148 23-198 129-279 (362)
201 KOG3268 Predicted E3 ubiquitin 77.1 0.88 1.9E-05 44.7 0.4 17 868-884 188-204 (234)
202 TIGR02521 type_IV_pilW type IV 77.0 38 0.00082 34.7 13.0 49 370-418 40-92 (234)
203 KOG0282 mRNA splicing factor [ 76.7 18 0.00038 41.7 10.4 50 31-85 312-362 (503)
204 PRK10747 putative protoheme IX 76.7 1.5E+02 0.0033 34.3 27.5 277 371-709 94-386 (398)
205 KOG0283 WD40 repeat-containing 76.7 63 0.0014 39.7 15.6 165 24-211 372-544 (712)
206 KOG1840 Kinesin light chain [C 76.0 1.8E+02 0.004 34.9 19.2 34 385-418 193-226 (508)
207 KOG1188 WD40 repeat protein [G 76.0 39 0.00084 37.5 12.3 144 32-198 41-194 (376)
208 KOG0650 WD40 repeat nucleolar 75.6 14 0.0003 43.7 9.3 103 11-121 597-716 (733)
209 KOG2932 E3 ubiquitin ligase in 75.6 1.4 2.9E-05 47.4 1.3 45 834-897 91-138 (389)
210 KOG1240 Protein kinase contain 75.5 8.6 0.00019 49.0 8.2 55 20-78 1194-1251(1431)
211 PRK02889 tolB translocation pr 75.4 81 0.0018 37.0 16.4 142 31-197 164-313 (427)
212 COG4847 Uncharacterized protei 75.3 2.1 4.6E-05 37.7 2.2 39 833-888 6-44 (103)
213 PF04841 Vps16_N: Vps16, N-ter 75.2 1.3E+02 0.0027 35.2 17.7 69 22-97 81-154 (410)
214 PRK04922 tolB translocation pr 75.1 86 0.0019 36.8 16.6 132 42-198 185-322 (433)
215 TIGR03300 assembly_YfgL outer 75.1 58 0.0013 37.3 14.9 106 25-148 59-165 (377)
216 smart00744 RINGv The RING-vari 75.0 4.3 9.3E-05 31.9 3.7 21 864-884 13-38 (49)
217 TIGR03866 PQQ_ABC_repeats PQQ- 74.8 1.3E+02 0.0027 32.4 30.1 100 32-147 2-104 (300)
218 PRK01742 tolB translocation pr 74.8 99 0.0022 36.3 16.9 133 41-198 184-322 (429)
219 KOG0273 Beta-transducin family 74.8 1.2E+02 0.0025 35.3 16.0 119 65-199 359-481 (524)
220 PRK04792 tolB translocation pr 74.7 1E+02 0.0022 36.4 17.1 145 29-198 181-336 (448)
221 KOG0772 Uncharacterized conser 74.7 52 0.0011 38.4 13.4 164 17-198 163-345 (641)
222 KOG4378 Nuclear protein COP1 [ 74.5 13 0.00028 42.9 8.6 105 3-121 196-304 (673)
223 PRK02889 tolB translocation pr 74.3 1.3E+02 0.0029 35.2 17.8 115 20-147 194-317 (427)
224 KOG0310 Conserved WD40 repeat- 73.8 1.7E+02 0.0038 34.0 17.2 101 13-121 104-207 (487)
225 KOG0308 Conserved WD40 repeat- 73.8 72 0.0016 38.4 14.5 113 22-147 118-244 (735)
226 PRK03629 tolB translocation pr 73.8 1.5E+02 0.0032 34.9 18.0 116 19-147 196-320 (429)
227 COG4946 Uncharacterized protei 73.7 83 0.0018 36.5 14.5 148 25-200 325-479 (668)
228 KOG2096 WD40 repeat protein [G 73.5 1.5E+02 0.0033 32.7 16.0 164 21-198 86-306 (420)
229 KOG2106 Uncharacterized conser 73.4 53 0.0011 38.3 13.0 102 22-138 408-512 (626)
230 PF14763 HPS3_C: Hermansky-Pud 73.2 14 0.00031 40.3 8.2 93 694-790 247-345 (353)
231 PF06977 SdiA-regulated: SdiA- 72.9 76 0.0016 34.3 13.9 150 29-198 73-248 (248)
232 KOG2139 WD40 repeat protein [G 72.8 1.7E+02 0.0037 33.0 16.8 112 20-148 194-313 (445)
233 PF13429 TPR_15: Tetratricopep 72.8 6.2 0.00013 43.3 5.8 152 535-709 79-239 (280)
234 PRK11189 lipoprotein NlpI; Pro 72.7 1.2E+02 0.0025 33.7 16.0 48 371-418 74-125 (296)
235 KOG0650 WD40 repeat nucleolar 72.3 8.2 0.00018 45.4 6.6 115 13-142 558-676 (733)
236 KOG0640 mRNA cleavage stimulat 72.1 32 0.00069 37.5 10.4 136 21-175 172-315 (430)
237 KOG3970 Predicted E3 ubiquitin 71.9 2.7 5.9E-05 43.0 2.4 34 833-883 50-83 (299)
238 PF08553 VID27: VID27 cytoplas 71.6 2E+02 0.0044 36.4 18.7 103 31-146 542-649 (794)
239 PRK00178 tolB translocation pr 71.2 1.5E+02 0.0033 34.5 17.4 145 29-198 161-317 (430)
240 KOG0802 E3 ubiquitin ligase [P 70.8 2.3 5.1E-05 51.5 2.0 38 832-883 290-327 (543)
241 TIGR01063 gyrA DNA gyrase, A s 70.6 2.7E+02 0.0059 35.6 20.1 160 22-198 589-767 (800)
242 KOG2376 Signal recognition par 70.4 2.5E+02 0.0054 33.9 20.6 49 370-418 184-251 (652)
243 KOG0293 WD40 repeat-containing 70.3 57 0.0012 37.1 12.1 147 23-197 356-510 (519)
244 PF04762 IKI3: IKI3 family; I 69.4 38 0.00082 43.9 12.4 189 539-763 699-928 (928)
245 PF13414 TPR_11: TPR repeat; P 68.3 7.6 0.00017 32.2 4.1 49 370-418 12-65 (69)
246 COG5110 RPN1 26S proteasome re 67.9 13 0.00028 43.4 6.9 97 642-742 189-299 (881)
247 PRK15359 type III secretion sy 67.4 26 0.00057 34.2 8.3 49 370-418 33-85 (144)
248 PF13424 TPR_12: Tetratricopep 67.4 5.5 0.00012 34.1 3.1 50 369-418 13-73 (78)
249 KOG0296 Angio-associated migra 67.3 2.2E+02 0.0048 32.1 16.1 112 21-147 106-221 (399)
250 KOG2096 WD40 repeat protein [G 67.3 31 0.00066 37.9 9.1 101 23-134 280-390 (420)
251 KOG2394 WD40 protein DMR-N9 [G 67.1 70 0.0015 37.6 12.4 115 22-146 220-362 (636)
252 KOG0973 Histone transcription 66.9 81 0.0018 40.0 13.8 65 24-96 132-199 (942)
253 TIGR02521 type_IV_pilW type IV 66.6 1.1E+02 0.0024 31.1 13.6 50 369-418 73-126 (234)
254 PRK05560 DNA gyrase subunit A; 66.6 3.1E+02 0.0067 35.1 19.5 158 22-198 591-770 (805)
255 KOG2395 Protein involved in va 66.3 77 0.0017 37.4 12.5 56 127-195 440-495 (644)
256 TIGR02800 propeller_TolB tol-p 65.9 2.1E+02 0.0046 32.9 17.2 94 42-147 171-267 (417)
257 KOG0265 U5 snRNP-specific prot 65.9 88 0.0019 34.2 12.1 143 25-195 180-333 (338)
258 KOG0272 U4/U6 small nuclear ri 65.7 91 0.002 35.6 12.6 56 24-84 220-280 (459)
259 PF09295 ChAPs: ChAPs (Chs5p-A 65.6 34 0.00075 39.5 9.9 109 615-762 186-294 (395)
260 PRK11138 outer membrane biogen 65.6 1.4E+02 0.0031 34.4 15.4 103 25-147 250-354 (394)
261 KOG0319 WD40-repeat-containing 65.4 71 0.0015 38.9 12.4 154 22-198 63-220 (775)
262 COG4105 ComL DNA uptake lipopr 65.2 1.9E+02 0.0041 31.2 14.5 145 392-558 35-191 (254)
263 smart00132 LIM Zinc-binding do 64.8 2.8 6E-05 30.5 0.6 29 835-880 1-29 (39)
264 PRK09782 bacteriophage N4 rece 64.7 2.4E+02 0.0051 37.1 18.2 13 731-743 248-260 (987)
265 TIGR02795 tol_pal_ybgF tol-pal 64.6 30 0.00066 31.6 7.9 48 371-418 12-66 (119)
266 KOG0771 Prolactin regulatory e 64.1 1.1E+02 0.0024 34.9 13.0 32 17-48 142-173 (398)
267 KOG1273 WD40 repeat protein [G 64.0 51 0.0011 36.2 10.0 89 68-175 26-116 (405)
268 KOG0299 U3 snoRNP-associated p 63.7 2E+02 0.0043 33.4 14.9 30 111-147 328-357 (479)
269 PRK13979 DNA topoisomerase IV 63.6 2.4E+02 0.0051 36.8 17.6 160 27-199 512-688 (957)
270 KOG1897 Damage-specific DNA bi 63.2 4.2E+02 0.009 34.0 18.5 106 128-256 595-702 (1096)
271 KOG0649 WD40 repeat protein [G 63.2 50 0.0011 35.0 9.4 111 23-145 64-185 (325)
272 PRK00178 tolB translocation pr 63.0 3E+02 0.0065 32.1 18.8 116 21-148 198-321 (430)
273 KOG2041 WD40 repeat protein [G 62.0 1.4E+02 0.0029 36.5 13.6 88 376-476 893-984 (1189)
274 KOG1007 WD repeat protein TSSC 61.5 1.2E+02 0.0026 33.0 12.1 126 10-143 112-286 (370)
275 COG5219 Uncharacterized conser 61.1 4.9 0.00011 49.4 2.0 43 829-883 1465-1507(1525)
276 KOG4649 PQQ (pyrrolo-quinoline 60.4 2.5E+02 0.0054 30.4 14.7 111 25-162 14-132 (354)
277 COG4257 Vgb Streptogramin lyas 60.4 2.6E+02 0.0056 30.6 15.7 188 27-251 109-340 (353)
278 KOG1587 Cytoplasmic dynein int 60.1 45 0.00098 40.3 9.9 115 24-147 350-473 (555)
279 PF12569 NARP1: NMDA receptor- 60.0 3.8E+02 0.0083 32.3 25.2 124 517-646 13-156 (517)
280 PF04097 Nic96: Nup93/Nic96; 59.4 4.1E+02 0.0089 32.9 18.4 265 395-707 115-450 (613)
281 KOG1058 Vesicle coat complex C 59.3 2.7E+02 0.0059 34.5 15.6 101 728-830 375-482 (948)
282 KOG0308 Conserved WD40 repeat- 59.0 85 0.0018 37.8 11.4 152 21-201 171-328 (735)
283 KOG4328 WD40 protein [Function 58.9 1E+02 0.0022 35.5 11.6 136 21-175 186-332 (498)
284 TIGR03302 OM_YfiO outer membra 58.5 2.4E+02 0.0052 29.5 15.9 48 539-586 171-226 (235)
285 TIGR01062 parC_Gneg DNA topois 58.4 3.3E+02 0.0071 34.4 17.1 156 25-198 488-652 (735)
286 KOG0827 Predicted E3 ubiquitin 58.4 4.4 9.6E-05 45.0 1.0 18 869-886 25-44 (465)
287 KOG0276 Vesicle coat complex C 58.3 3.4E+02 0.0074 32.9 15.9 149 25-197 61-212 (794)
288 smart00777 Mad3_BUB1_I Mad3/BU 58.3 29 0.00064 33.2 6.4 111 548-708 6-123 (125)
289 KOG0277 Peroxisomal targeting 58.2 2.1E+02 0.0045 30.8 12.9 149 28-198 25-176 (311)
290 KOG2164 Predicted E3 ubiquitin 58.0 4.7 0.0001 46.7 1.2 33 833-884 186-218 (513)
291 COG2976 Uncharacterized protei 58.0 31 0.00067 35.5 6.8 50 369-418 134-186 (207)
292 PF13429 TPR_15: Tetratricopep 57.9 59 0.0013 35.5 9.9 46 371-416 87-135 (280)
293 KOG4497 Uncharacterized conser 57.8 1.1E+02 0.0025 33.8 11.3 101 23-138 320-424 (447)
294 PF07035 Mic1: Colon cancer-as 57.6 1.3E+02 0.0029 30.3 11.2 65 496-560 46-115 (167)
295 PF04840 Vps16_C: Vps16, C-ter 57.5 39 0.00084 38.0 8.3 66 496-562 225-290 (319)
296 PF12895 Apc3: Anaphase-promot 57.3 10 0.00023 33.0 3.1 44 373-416 1-50 (84)
297 KOG2003 TPR repeat-containing 57.3 59 0.0013 37.3 9.4 70 521-590 503-585 (840)
298 PF13570 PQQ_3: PQQ-like domai 57.1 14 0.00031 27.3 3.3 25 24-48 14-38 (40)
299 KOG1523 Actin-related protein 57.1 2E+02 0.0043 31.9 12.9 156 21-199 10-175 (361)
300 cd00189 TPR Tetratricopeptide 57.0 24 0.00052 29.5 5.4 49 370-418 9-61 (100)
301 KOG0301 Phospholipase A2-activ 57.0 1.4E+02 0.0031 36.3 12.8 124 7-147 165-289 (745)
302 KOG2111 Uncharacterized conser 56.9 3.1E+02 0.0068 30.4 17.5 154 21-198 94-254 (346)
303 KOG1272 WD40-repeat-containing 56.8 25 0.00055 40.3 6.5 73 16-96 246-321 (545)
304 KOG1034 Transcriptional repres 55.9 12 0.00027 41.0 3.8 67 26-96 314-381 (385)
305 KOG0804 Cytoplasmic Zn-finger 55.9 6.2 0.00013 44.9 1.6 35 834-883 176-210 (493)
306 PRK05561 DNA topoisomerase IV 55.9 3.7E+02 0.008 34.1 17.2 153 26-198 502-664 (742)
307 PRK11138 outer membrane biogen 55.6 1.2E+02 0.0025 35.1 12.3 99 26-144 289-392 (394)
308 KOG0279 G protein beta subunit 55.4 3.1E+02 0.0068 29.9 25.8 139 19-175 13-158 (315)
309 KOG2034 Vacuolar sorting prote 54.9 1.5E+02 0.0031 37.4 12.9 70 514-587 364-439 (911)
310 KOG0265 U5 snRNP-specific prot 54.7 1.8E+02 0.0038 32.0 12.0 124 31-175 102-226 (338)
311 PF08311 Mad3_BUB1_I: Mad3/BUB 54.7 14 0.0003 35.5 3.6 111 548-708 6-123 (126)
312 PRK05560 DNA gyrase subunit A; 54.5 3.2E+02 0.0069 35.1 16.6 158 28-199 495-669 (805)
313 KOG0295 WD40 repeat-containing 54.4 1.4E+02 0.0031 33.5 11.5 149 21-198 108-263 (406)
314 KOG1332 Vesicle coat complex C 54.1 1.2E+02 0.0026 32.3 10.4 111 29-148 21-136 (299)
315 KOG2445 Nuclear pore complex c 53.7 2.2E+02 0.0048 31.4 12.6 103 65-175 13-122 (361)
316 KOG0973 Histone transcription 53.6 1.4E+02 0.0031 37.9 12.8 152 24-198 16-199 (942)
317 KOG1332 Vesicle coat complex C 53.6 47 0.001 35.2 7.4 119 65-200 11-136 (299)
318 KOG0321 WD40 repeat-containing 53.5 2.4E+02 0.0053 34.1 13.8 109 31-148 64-177 (720)
319 PF07719 TPR_2: Tetratricopept 53.4 23 0.00051 24.5 3.8 27 392-418 2-28 (34)
320 COG5152 Uncharacterized conser 52.9 6.3 0.00014 39.6 1.0 31 835-884 198-228 (259)
321 KOG4227 WD40 repeat protein [G 52.8 1.3E+02 0.0029 33.9 11.0 93 22-120 106-204 (609)
322 KOG0321 WD40 repeat-containing 52.5 1.4E+02 0.0031 35.9 11.8 119 24-147 221-348 (720)
323 KOG0772 Uncharacterized conser 52.4 89 0.0019 36.6 9.9 121 65-201 167-300 (641)
324 PF04363 DUF496: Protein of un 52.1 32 0.00069 30.2 4.9 55 768-822 38-92 (95)
325 PRK04792 tolB translocation pr 52.0 3.4E+02 0.0074 32.0 15.6 90 25-120 265-359 (448)
326 KOG2005 26S proteasome regulat 52.0 44 0.00096 40.3 7.7 52 690-742 245-297 (878)
327 PF12894 Apc4_WD40: Anaphase-p 51.6 35 0.00076 26.6 4.8 31 111-147 12-42 (47)
328 KOG0647 mRNA export protein (c 51.6 2.6E+02 0.0056 30.8 12.6 124 53-200 17-145 (347)
329 PRK10803 tol-pal system protei 51.3 51 0.0011 35.9 7.8 48 371-418 153-207 (263)
330 PF12854 PPR_1: PPR repeat 51.0 21 0.00045 25.5 3.2 24 537-560 10-33 (34)
331 KOG3799 Rab3 effector RIM1 and 50.9 68 0.0015 30.5 7.2 18 828-845 60-77 (169)
332 PF09976 TPR_21: Tetratricopep 50.8 35 0.00076 33.2 6.0 93 372-470 22-129 (145)
333 KOG4499 Ca2+-binding protein R 50.5 52 0.0011 34.8 7.1 56 3-60 196-253 (310)
334 KOG2111 Uncharacterized conser 50.3 4E+02 0.0086 29.6 18.5 126 2-148 122-258 (346)
335 TIGR01063 gyrA DNA gyrase, A s 50.2 2.9E+02 0.0062 35.4 15.2 159 27-199 492-667 (800)
336 KOG1538 Uncharacterized conser 50.1 2.9E+02 0.0063 33.6 13.7 75 516-590 640-717 (1081)
337 PF11768 DUF3312: Protein of u 50.1 5.3E+02 0.012 31.0 16.1 69 111-199 260-328 (545)
338 KOG1912 WD40 repeat protein [G 50.1 6.1E+02 0.013 31.7 20.6 222 111-363 56-305 (1062)
339 KOG0264 Nucleosome remodeling 49.9 4.1E+02 0.0088 30.8 14.5 151 31-199 240-403 (422)
340 KOG0284 Polyadenylation factor 49.9 97 0.0021 35.3 9.5 148 27-199 104-251 (464)
341 KOG0285 Pleiotropic regulator 49.4 2.4E+02 0.0052 31.7 12.2 117 23-148 237-391 (460)
342 KOG3060 Uncharacterized conser 48.8 1.7E+02 0.0037 31.5 10.7 58 372-429 63-124 (289)
343 COG2956 Predicted N-acetylgluc 48.7 4.4E+02 0.0094 29.6 17.1 60 369-428 77-144 (389)
344 PF12341 DUF3639: Protein of u 48.5 27 0.00059 23.8 3.1 22 23-44 3-24 (27)
345 COG5432 RAD18 RING-finger-cont 48.2 9.4 0.0002 40.8 1.4 34 831-883 23-56 (391)
346 PF07754 DUF1610: Domain of un 47.9 8.1 0.00018 25.5 0.6 10 836-845 1-10 (24)
347 COG5170 CDC55 Serine/threonine 47.1 51 0.0011 36.0 6.6 117 65-195 26-167 (460)
348 PRK13979 DNA topoisomerase IV 46.7 6.9E+02 0.015 32.7 17.8 69 23-96 609-687 (957)
349 PRK10747 putative protoheme IX 46.6 3E+02 0.0065 31.9 13.8 17 368-384 194-210 (398)
350 KOG0274 Cdc4 and related F-box 46.3 6.2E+02 0.013 30.7 17.5 145 22-198 250-398 (537)
351 PF13934 ELYS: Nuclear pore co 46.2 49 0.0011 35.2 6.6 53 364-418 83-135 (226)
352 PF04423 Rad50_zn_hook: Rad50 46.0 10 0.00022 30.4 1.0 11 835-845 22-32 (54)
353 KOG0287 Postreplication repair 45.7 12 0.00026 40.9 1.8 35 832-885 22-56 (442)
354 COG5184 ATS1 Alpha-tubulin sup 45.2 5.8E+02 0.013 30.1 15.2 71 19-95 173-255 (476)
355 KOG1940 Zn-finger protein [Gen 44.9 18 0.0004 39.2 3.1 37 835-886 160-196 (276)
356 KOG1063 RNA polymerase II elon 44.9 5.9E+02 0.013 31.3 15.3 156 24-198 528-697 (764)
357 TIGR00540 hemY_coli hemY prote 44.6 5.6E+02 0.012 29.7 24.6 105 551-658 246-360 (409)
358 KOG1524 WD40 repeat-containing 44.5 2.7E+02 0.0059 33.0 12.2 140 28-200 72-216 (737)
359 KOG0319 WD40-repeat-containing 44.3 5.4E+02 0.012 31.8 15.0 167 6-200 8-179 (775)
360 KOG4497 Uncharacterized conser 43.8 1.3E+02 0.0028 33.4 9.0 83 28-120 58-143 (447)
361 PF13525 YfiO: Outer membrane 43.7 3.9E+02 0.0084 27.6 18.8 47 370-416 14-67 (203)
362 KOG2002 TPR-containing nuclear 43.5 6.7E+02 0.014 32.3 16.0 50 369-418 278-334 (1018)
363 PF10433 MMS1_N: Mono-function 43.5 2.2E+02 0.0048 34.1 12.5 152 30-198 221-388 (504)
364 KOG1900 Nuclear pore complex, 43.4 3.4E+02 0.0075 35.8 14.0 95 37-148 95-209 (1311)
365 PF13176 TPR_7: Tetratricopept 43.3 35 0.00076 24.5 3.5 24 395-418 3-26 (36)
366 KOG0285 Pleiotropic regulator 43.2 3.5E+02 0.0076 30.5 12.3 110 24-148 196-309 (460)
367 KOG1963 WD40 repeat protein [G 43.2 1.9E+02 0.0042 36.0 11.4 112 12-143 201-319 (792)
368 TIGR01061 parC_Gpos DNA topois 43.1 8E+02 0.017 31.1 17.6 159 26-198 492-664 (738)
369 KOG0643 Translation initiation 43.1 2.3E+02 0.005 30.7 10.5 103 65-192 10-114 (327)
370 PF14938 SNAP: Soluble NSF att 42.8 1.7E+02 0.0037 32.1 10.5 24 536-559 157-180 (282)
371 PF03178 CPSF_A: CPSF A subuni 42.7 2.7E+02 0.0058 31.1 12.3 116 22-144 130-263 (321)
372 PRK05423 hypothetical protein; 42.4 52 0.0011 29.3 4.8 57 766-822 43-99 (104)
373 PF13176 TPR_7: Tetratricopept 42.2 25 0.00054 25.3 2.5 23 537-559 2-24 (36)
374 PF00412 LIM: LIM domain; Int 42.1 5.4 0.00012 32.1 -1.2 28 836-880 1-28 (58)
375 PF00780 CNH: CNH domain; Int 41.5 4.8E+02 0.01 28.0 14.8 110 22-147 139-256 (275)
376 PF01535 PPR: PPR repeat; Int 41.5 25 0.00053 23.7 2.3 25 537-561 3-27 (31)
377 KOG1240 Protein kinase contain 41.4 4.2E+02 0.0092 34.8 14.1 159 22-199 1049-1224(1431)
378 TIGR00756 PPR pentatricopeptid 41.3 28 0.0006 23.9 2.6 24 537-560 3-26 (35)
379 PF02318 FYVE_2: FYVE-type zin 41.1 41 0.0009 31.8 4.5 36 832-881 53-88 (118)
380 TIGR02552 LcrH_SycD type III s 40.9 77 0.0017 29.9 6.6 49 370-418 26-78 (135)
381 PRK01742 tolB translocation pr 40.9 3.6E+02 0.0079 31.5 13.5 110 21-145 203-323 (429)
382 KOG0306 WD40-repeat-containing 40.8 5.5E+02 0.012 31.9 14.3 147 24-197 417-577 (888)
383 PF07649 C1_3: C1-like domain; 40.6 21 0.00045 24.8 1.8 28 835-879 2-30 (30)
384 PRK09782 bacteriophage N4 rece 39.9 2.1E+02 0.0046 37.5 12.0 13 546-558 521-533 (987)
385 PRK10049 pgaA outer membrane p 39.5 9.1E+02 0.02 30.7 32.2 81 369-449 23-112 (765)
386 KOG1517 Guanine nucleotide bin 39.5 1.9E+02 0.0041 37.2 10.5 114 24-147 1214-1334(1387)
387 KOG2110 Uncharacterized conser 39.5 6.2E+02 0.013 28.8 17.1 154 22-197 88-245 (391)
388 KOG0553 TPR repeat-containing 39.2 32 0.0007 37.6 3.8 48 371-418 125-176 (304)
389 PF07569 Hira: TUP1-like enhan 39.1 1E+02 0.0023 32.5 7.7 28 71-101 16-43 (219)
390 PF13181 TPR_8: Tetratricopept 38.6 57 0.0012 22.5 3.9 27 392-418 2-28 (34)
391 PF10168 Nup88: Nuclear pore c 38.5 6.2E+02 0.013 31.9 15.3 77 65-147 84-180 (717)
392 KOG0313 Microtubule binding pr 38.1 5.5E+02 0.012 29.2 12.9 148 24-200 263-418 (423)
393 KOG4718 Non-SMC (structural ma 38.1 87 0.0019 32.4 6.3 32 834-883 182-213 (235)
394 KOG0274 Cdc4 and related F-box 38.0 6.4E+02 0.014 30.6 15.0 144 22-197 332-479 (537)
395 KOG0547 Translocase of outer m 37.9 99 0.0021 36.2 7.5 23 537-559 540-562 (606)
396 KOG0269 WD40 repeat-containing 37.4 86 0.0019 38.5 7.2 83 31-121 189-274 (839)
397 KOG4328 WD40 protein [Function 37.3 1E+02 0.0023 35.5 7.5 102 24-138 282-391 (498)
398 TIGR02795 tol_pal_ybgF tol-pal 37.2 53 0.0011 29.9 4.6 50 369-418 47-103 (119)
399 KOG1408 WD40 repeat protein [F 36.9 3.7E+02 0.008 33.1 12.0 111 23-146 598-713 (1080)
400 PF06977 SdiA-regulated: SdiA- 36.6 5.8E+02 0.013 27.6 23.0 118 66-199 22-148 (248)
401 KOG0642 Cell-cycle nuclear pro 36.4 5.9E+02 0.013 30.5 13.4 71 23-97 346-425 (577)
402 COG1729 Uncharacterized protei 36.3 1.2E+02 0.0026 32.9 7.6 48 371-418 151-205 (262)
403 PF04841 Vps16_N: Vps16, N-ter 36.2 3E+02 0.0065 32.1 11.6 82 27-119 186-268 (410)
404 PF11768 DUF3312: Protein of u 36.1 1.3E+02 0.0028 35.9 8.3 67 66-143 260-326 (545)
405 PLN03088 SGT1, suppressor of 36.0 93 0.002 35.6 7.2 49 370-418 11-63 (356)
406 PF11598 COMP: Cartilage oligo 35.8 1.4E+02 0.0031 23.1 5.7 22 786-807 4-25 (45)
407 KOG2177 Predicted E3 ubiquitin 35.6 18 0.0004 39.8 1.4 33 832-883 12-44 (386)
408 PLN00033 photosystem II stabil 35.5 7.7E+02 0.017 28.7 17.3 125 30-174 248-379 (398)
409 PF04641 Rtf2: Rtf2 RING-finge 35.3 21 0.00045 38.9 1.7 35 833-883 113-148 (260)
410 KOG2395 Protein involved in va 35.2 2.6E+02 0.0055 33.3 10.2 99 33-145 396-499 (644)
411 PF04840 Vps16_C: Vps16, C-ter 34.9 7E+02 0.015 28.0 23.3 98 619-727 194-292 (319)
412 KOG2314 Translation initiation 34.6 4.1E+02 0.009 31.7 11.7 117 66-200 446-575 (698)
413 KOG4236 Serine/threonine prote 34.5 11 0.00023 44.1 -0.7 41 834-888 157-197 (888)
414 KOG0292 Vesicle coat complex C 34.4 5.9E+02 0.013 32.4 13.4 138 33-198 23-163 (1202)
415 PF13041 PPR_2: PPR repeat fam 34.4 38 0.00081 26.2 2.6 24 537-560 6-29 (50)
416 KOG0299 U3 snoRNP-associated p 34.1 7.5E+02 0.016 28.9 13.5 155 21-199 286-455 (479)
417 KOG0269 WD40 repeat-containing 34.0 2.4E+02 0.0051 35.0 10.0 131 30-175 99-230 (839)
418 PF04564 U-box: U-box domain; 33.7 22 0.00047 30.5 1.2 34 833-885 4-37 (73)
419 PRK02603 photosystem I assembl 33.7 68 0.0015 32.2 5.1 43 376-418 18-62 (172)
420 smart00564 PQQ beta-propeller 33.5 76 0.0016 21.9 3.9 24 28-51 3-27 (33)
421 KOG0272 U4/U6 small nuclear ri 33.3 1.9E+02 0.0041 33.2 8.6 90 22-119 346-439 (459)
422 KOG0645 WD40 repeat protein [G 33.3 6.7E+02 0.015 27.4 18.8 139 21-174 14-159 (312)
423 PF13360 PQQ_2: PQQ-like domai 33.3 5.6E+02 0.012 26.5 13.5 37 24-60 115-152 (238)
424 COG3071 HemY Uncharacterized e 33.0 6.8E+02 0.015 28.8 12.9 42 510-560 172-213 (400)
425 KOG1126 DNA-binding cell divis 33.0 3.8E+02 0.0083 32.7 11.5 138 544-705 465-612 (638)
426 KOG3630 Nuclear pore complex, 32.8 6.9E+02 0.015 32.8 13.9 53 110-174 198-252 (1405)
427 PF14781 BBS2_N: Ciliary BBSom 32.7 4.7E+02 0.01 25.4 11.3 83 101-197 40-122 (136)
428 KOG4121 Nuclear pore complex, 32.6 3.3E+02 0.0071 35.0 11.2 66 395-467 776-841 (1128)
429 PF11789 zf-Nse: Zinc-finger o 32.6 18 0.0004 29.4 0.5 33 833-883 11-43 (57)
430 PF13512 TPR_18: Tetratricopep 32.4 63 0.0014 31.7 4.3 47 370-416 19-72 (142)
431 KOG0640 mRNA cleavage stimulat 32.3 3.6E+02 0.0077 29.8 10.1 155 24-200 115-291 (430)
432 PF10282 Lactonase: Lactonase, 32.3 7.7E+02 0.017 27.7 17.3 146 17-173 188-345 (345)
433 smart00036 CNH Domain found in 32.1 1.8E+02 0.0039 32.4 8.5 68 116-198 3-71 (302)
434 PF13525 YfiO: Outer membrane 32.1 73 0.0016 33.1 5.1 153 390-558 4-165 (203)
435 PF10571 UPF0547: Uncharacteri 32.0 17 0.00036 24.6 0.2 11 835-845 2-12 (26)
436 smart00249 PHD PHD zinc finger 31.7 26 0.00056 26.2 1.3 15 868-882 18-32 (47)
437 KOG0277 Peroxisomal targeting 31.5 6.5E+02 0.014 27.2 11.6 146 29-199 115-266 (311)
438 PLN03088 SGT1, suppressor of 31.3 52 0.0011 37.6 4.2 49 370-418 45-97 (356)
439 PF00515 TPR_1: Tetratricopept 31.3 85 0.0018 21.7 3.8 27 392-418 2-28 (34)
440 KOG1070 rRNA processing protei 31.2 1E+03 0.022 32.1 15.3 124 529-658 1525-1659(1710)
441 PF00130 C1_1: Phorbol esters/ 30.9 17 0.00036 28.8 0.0 36 831-881 9-45 (53)
442 PF11571 Med27: Mediator compl 30.7 20 0.00043 32.2 0.5 37 827-878 49-89 (90)
443 COG5170 CDC55 Serine/threonine 30.7 1.1E+02 0.0024 33.6 6.0 70 16-85 21-107 (460)
444 COG3071 HemY Uncharacterized e 30.6 4.9E+02 0.011 29.9 11.3 50 369-418 161-214 (400)
445 PF13540 RCC1_2: Regulator of 30.3 1.4E+02 0.003 20.7 4.6 25 24-48 1-25 (30)
446 cd00189 TPR Tetratricopeptide 30.2 61 0.0013 26.9 3.6 49 370-418 43-95 (100)
447 PF13428 TPR_14: Tetratricopep 30.0 84 0.0018 23.5 3.9 26 393-418 3-28 (44)
448 KOG0286 G-protein beta subunit 29.9 8E+02 0.017 27.1 17.8 152 23-199 57-216 (343)
449 COG3063 PilF Tfp pilus assembl 29.5 2.2E+02 0.0047 30.4 7.8 81 371-451 113-204 (250)
450 KOG3881 Uncharacterized conser 29.5 2.7E+02 0.0058 31.7 8.9 79 31-119 216-299 (412)
451 KOG1002 Nucleotide excision re 29.3 29 0.00062 40.3 1.6 32 834-884 537-568 (791)
452 PF14655 RAB3GAP2_N: Rab3 GTPa 29.3 3.4E+02 0.0075 31.7 10.3 82 110-201 56-147 (415)
453 TIGR02658 TTQ_MADH_Hv methylam 29.1 7E+02 0.015 28.5 12.6 108 29-147 204-331 (352)
454 TIGR02552 LcrH_SycD type III s 29.0 81 0.0017 29.7 4.5 49 370-418 60-112 (135)
455 PF14761 HPS3_N: Hermansky-Pud 28.8 7.1E+02 0.015 26.2 11.9 55 25-83 21-77 (215)
456 KOG0302 Ribosome Assembly prot 28.7 6.3E+02 0.014 28.8 11.5 115 67-198 259-376 (440)
457 KOG2376 Signal recognition par 28.6 1.1E+03 0.025 28.6 21.5 48 371-418 89-137 (652)
458 KOG4121 Nuclear pore complex, 28.5 3.7E+02 0.0079 34.6 10.6 40 510-549 774-813 (1128)
459 COG2888 Predicted Zn-ribbon RN 28.5 27 0.00058 28.4 0.8 21 834-870 10-30 (61)
460 PF02239 Cytochrom_D1: Cytochr 28.3 3.9E+02 0.0085 30.7 10.7 80 31-120 5-87 (369)
461 PRK01029 tolB translocation pr 28.2 3E+02 0.0064 32.3 9.9 91 24-120 329-424 (428)
462 PF12234 Rav1p_C: RAVE protein 28.1 93 0.002 38.2 5.6 72 649-725 435-508 (631)
463 PRK14720 transcript cleavage f 27.9 1E+03 0.022 30.9 14.8 114 539-659 121-249 (906)
464 PF13414 TPR_11: TPR repeat; P 27.9 83 0.0018 25.8 3.9 28 391-418 3-30 (69)
465 PF03704 BTAD: Bacterial trans 27.6 84 0.0018 30.4 4.5 33 392-424 63-95 (146)
466 COG2926 Uncharacterized protei 27.5 1.7E+02 0.0036 26.2 5.5 57 766-822 43-99 (109)
467 KOG0281 Beta-TrCP (transducin 27.4 7.3E+02 0.016 28.0 11.5 32 22-53 278-310 (499)
468 PF10602 RPN7: 26S proteasome 27.4 1.8E+02 0.0039 29.6 6.9 55 375-429 17-75 (177)
469 PRK01029 tolB translocation pr 26.8 9.1E+02 0.02 28.3 13.6 114 25-148 284-405 (428)
470 KOG4739 Uncharacterized protei 26.7 32 0.00069 36.4 1.3 30 835-881 5-34 (233)
471 COG2956 Predicted N-acetylgluc 26.7 9.6E+02 0.021 27.1 16.4 171 365-559 145-343 (389)
472 PRK14574 hmsH outer membrane p 26.6 7.4E+02 0.016 31.9 13.5 143 493-639 52-210 (822)
473 PRK15359 type III secretion sy 26.6 80 0.0017 30.8 4.0 49 370-418 67-119 (144)
474 KOG1645 RING-finger-containing 26.5 51 0.0011 37.4 2.8 37 833-883 4-40 (463)
475 PRK10866 outer membrane biogen 26.3 8.2E+02 0.018 26.1 15.7 48 370-417 41-95 (243)
476 KOG0278 Serine/threonine kinas 26.2 7.4E+02 0.016 26.7 10.9 107 22-148 185-299 (334)
477 PF07282 OrfB_Zn_ribbon: Putat 26.2 25 0.00055 29.5 0.3 36 833-881 28-63 (69)
478 KOG0275 Conserved WD40 repeat- 26.1 9.3E+02 0.02 26.7 12.1 105 30-148 359-469 (508)
479 PRK04043 tolB translocation pr 25.8 6.9E+02 0.015 29.2 12.3 98 39-148 211-311 (419)
480 PF09295 ChAPs: ChAPs (Chs5p-A 25.4 1.3E+02 0.0028 34.9 6.0 72 366-437 205-285 (395)
481 CHL00033 ycf3 photosystem I as 25.4 1.1E+02 0.0024 30.4 5.0 48 371-418 45-99 (168)
482 COG5222 Uncharacterized conser 25.3 43 0.00092 36.1 1.9 33 834-884 275-307 (427)
483 KOG0826 Predicted E3 ubiquitin 25.2 37 0.0008 37.4 1.4 38 833-888 300-337 (357)
484 PF02239 Cytochrom_D1: Cytochr 25.2 1.1E+03 0.023 27.1 15.1 62 31-100 48-110 (369)
485 COG5236 Uncharacterized conser 25.1 52 0.0011 36.2 2.5 30 832-880 60-89 (493)
486 PF13812 PPR_3: Pentatricopept 25.0 91 0.002 21.3 3.1 25 536-560 3-27 (34)
487 KOG1070 rRNA processing protei 24.9 1.6E+03 0.034 30.5 15.4 77 376-456 1519-1600(1710)
488 PF14559 TPR_19: Tetratricopep 24.5 1.8E+02 0.0039 23.5 5.3 22 540-561 31-52 (68)
489 KOG3621 WD40 repeat-containing 24.5 1.9E+02 0.0042 35.3 7.2 99 67-175 35-134 (726)
490 KOG0309 Conserved WD40 repeat- 24.4 26 0.00057 42.4 0.1 20 864-883 1042-1061(1081)
491 PF14783 BBS2_Mid: Ciliary BBS 23.4 6.2E+02 0.013 23.7 12.7 93 32-140 16-108 (111)
492 PRK10370 formate-dependent nit 23.3 2.6E+02 0.0056 28.9 7.3 55 364-418 72-137 (198)
493 COG5574 PEX10 RING-finger-cont 23.3 39 0.00085 36.1 1.1 32 832-882 214-245 (271)
494 KOG2377 Uncharacterized conser 23.2 2.9E+02 0.0063 32.2 7.9 113 19-141 66-179 (657)
495 smart00028 TPR Tetratricopepti 23.0 1.1E+02 0.0024 19.3 3.2 26 393-418 3-28 (34)
496 KOG1523 Actin-related protein 22.9 5.3E+02 0.012 28.8 9.5 96 66-175 11-110 (361)
497 KOG1063 RNA polymerase II elon 22.5 1.5E+03 0.033 28.0 14.3 115 24-146 575-699 (764)
498 smart00109 C1 Protein kinase C 22.2 52 0.0011 25.0 1.4 36 832-882 10-45 (49)
499 PRK11189 lipoprotein NlpI; Pro 22.0 1.1E+03 0.023 25.9 14.4 155 537-708 101-260 (296)
500 TIGR03302 OM_YfiO outer membra 22.0 1.4E+02 0.003 31.4 5.2 48 371-418 43-97 (235)
No 1
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-138 Score=1190.68 Aligned_cols=878 Identities=42% Similarity=0.699 Sum_probs=759.1
Q ss_pred cCcceehhHHHHHhhcCCCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEE
Q 001978 4 MRQVFQVDVLERYAAKGRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIA 82 (987)
Q Consensus 4 ~~~~f~~~~~~~~~~~~~~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli 82 (987)
.+++|+.+.+...+|- ..|.+++|++|++|+.+. ++| + .+....++++++.. .++++++|+||+|+|++|
T Consensus 22 ~~~~~s~~~~~~~~~~--~~~~~l~vs~~~~i~~l~---l~~--~~~~~~~~d~~l~k~~--~~~~~k~f~dp~Gs~i~i 92 (911)
T KOG2034|consen 22 QFLTFSREKIHLKVPS--EDIDQLAVSKNWLIMRLG---LLD--LGRANNPIDCELGKKL--EAKIHKMFLDPTGSHILI 92 (911)
T ss_pred hhhhccccceEEecCC--ccceeEEeecceEEEEee---ccc--cCCCCCccccccccee--cceeeEEEeCCCCcEEEE
Confidence 4566777777666552 246888888888887777 343 5 55555566676553 469999999999999999
Q ss_pred EeecCCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeC
Q 001978 83 TIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELN 162 (987)
Q Consensus 83 ~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~ 162 (987)
.++ ++.++|+|.. .|+|+|+|+||+.|++|||. .++++|+++++||.+|.++|..+...++...+.+.++.+-
T Consensus 93 a~~---s~~~m~t~~~-~k~r~Ltk~k~~~veav~w~---ite~st~~~li~t~qg~~~e~~~~~~~~~~~q~~~l~~l~ 165 (911)
T KOG2034|consen 93 ATT---STEYLYTHDN-QKVRVLTKLKGQLVEAVAWW---ITESSTLPILIGTIQGFIFELELPKNKKGIAQIKRLINLI 165 (911)
T ss_pred Eec---CCceEEeccc-CceeeHHHHhhhhHHHHHhh---ccCCCchhhhhccccceEEEeccCccccchhhHHHHHhhh
Confidence 999 7899999987 78999999999999999994 6788999999999999999999876643333334443332
Q ss_pred --CCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEecC-----CchHHHHhhhhcccccccccCCCcCCCcceeee--
Q 001978 163 --ELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTGF-----GSLDTVFASYLDRAVHFMELPGEILNSELHFFI-- 233 (987)
Q Consensus 163 --~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g~-----~~l~~lf~~~~~~~~~~~elp~~~~~s~l~~~~-- 233 (987)
..|.||.++.- .+|++++++|+.|+|+|.++ .++...|..|.+.++++.+.+.+.+.+.+.+++
T Consensus 166 ~~~e~~pv~~Le~-------~~r~~~~~tt~q~il~f~~t~~a~~~~f~~~f~~~~~~~h~i~s~k~~~~~~~~~f~~~~ 238 (911)
T KOG2034|consen 166 LSNEPAPVVKLEG-------ERRYFVSATTPQRILMFLATEGAEFTSFSPFFAGYMELEHPIRSFKSDEGFSNLRFSTMP 238 (911)
T ss_pred ccCCCCceeeecc-------ccceEEEEechhhhHhhHhhhcCcccccchhhhcccccCCccccccchhhhhhheeecCC
Confidence 22677877663 34899999999999999865 357788888877667777766655555555442
Q ss_pred -ccCCCceEEEeecCceEEEEeecCCCCCCCCCCCccccccccccccccCCCCCCCCCcccccCCceEEEEECCEEEEEe
Q 001978 234 -KQRRAVHFAWLSGAGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLMGNKVKVVN 312 (987)
Q Consensus 234 -~~~~~~~faW~t~~gi~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~p~si~lT~~h~llL~~~~l~vvn 312 (987)
..+.|..+||+++.||.+|.+....+++ ...+.+.-.++++ +.+++..++|.+|++|+||+++|+.|++.+||
T Consensus 239 ~~~a~pk~~aw~~~~gi~~G~~~~~~n~~-----~~ll~~e~~~e~~-~~eg~~~~~p~~ivLT~yH~LLl~~d~V~avs 312 (911)
T KOG2034|consen 239 KNIAEPKTWAWKSPDGINFGNVNIYANRD-----QDLLEEEFNIELP-LGEGRKLEPPKAIVLTEFHFLLLYADRVLAVS 312 (911)
T ss_pred ccchhHHHHHhhCCCcceeccccccCCch-----HHHHHHhhhhccc-cccCCCCCCcceehHHHHHHHHHhcCceeeee
Confidence 2356899999999999999887643221 1122221122222 23333346899999999999999999999999
Q ss_pred cCCCceEEEEEecCCCCccccceeeEeeccCCCeEEEEeCCcEEEEEcccchhhHHHHHHchhhHHHHHHhcCC-chhHh
Q 001978 313 RISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCRD-PLQRD 391 (987)
Q Consensus 313 ~l~~~~v~~~~l~~~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e~~~~W~~ll~~~~fe~Al~~~~~-~~~~~ 391 (987)
++|+++|++++++. +..|.++|+|+|...++||+||.+.++++.+++|.|++|+.||++|+|++|+++|++ |..++
T Consensus 313 ~Ln~~vI~~~~~n~---s~~g~~LGlv~D~va~~~w~YTq~~vf~~~vndE~R~vWk~yLd~g~y~kAL~~ar~~p~~le 389 (911)
T KOG2034|consen 313 LLNGEVIYRDQFNE---SELGGILGLVSDSVAETFWLYTQTSVFEYGVNDEARDVWKTYLDKGEFDKALEIARTRPDALE 389 (911)
T ss_pred ccCccccchhccCc---hhcccceeeeeccccceEEEEEeceeeeeeeccchHHHHHHHHhcchHHHHHHhccCCHHHHH
Confidence 99999999999964 247899999999999999999999999999999999999999999999999999997 58999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCChHHHHHHhcCcChHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Q 001978 392 QVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLD 471 (987)
Q Consensus 392 ~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~~~E~v~lkFl~~~~~~~L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~ 471 (987)
.|+.+||+++|+.++|..||++||++. .+||+|+|||+..++.++|+.||.+||+++++.+++|+++|.+|++|+|+.
T Consensus 390 ~Vl~~qAdf~f~~k~y~~AA~~yA~t~--~~FEEVaLKFl~~~~~~~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~ 467 (911)
T KOG2034|consen 390 TVLLKQADFLFQDKEYLRAAEIYAETL--SSFEEVALKFLEINQERALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLE 467 (911)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 899999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHHHHHhcccHH
Q 001978 472 KINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAK 551 (987)
Q Consensus 472 ~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~ 551 (987)
+||+++..+....++...+++....+|..|+..+...+|++|+|+++.+||+.+++++||.+++||+.|+.+|+++++|.
T Consensus 468 ~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d~~~vv~~~~q~e~ye 547 (911)
T KOG2034|consen 468 QLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKDYEFVVSYWIQQENYE 547 (911)
T ss_pred HHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999744545556667778888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCchhhHHhhHHHHHhHChHHHHHHHHcCCCCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCC
Q 001978 552 KALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNE 631 (987)
Q Consensus 552 ~AL~~l~~~~~~~~li~k~~~~Ll~~~p~~ti~~l~~~~~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~ 631 (987)
+||++|.++.+ .++.|+|++.|+.+.|.+||+.|++.++++|.+++|.+++|..+.+.....+++++||++|+...+..
T Consensus 548 eaLevL~~~~~-~el~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~ 626 (911)
T KOG2034|consen 548 EALEVLLNQRN-PELFYKYAPELITHSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMT 626 (911)
T ss_pred HHHHHHHhccc-hhhHHHhhhHHHhcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCc
Confidence 99999999966 69999999999999999999999999999999999999999888777778899999999999999999
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHhcC
Q 001978 632 DPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVD 711 (987)
Q Consensus 632 ~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~~d 711 (987)
++.+||.++.||+++. ++.++-+|... +. .+...+||+++|+|+|.+++..+++|+||++|++|++||++|++.|
T Consensus 627 ~~~ihn~ll~lya~~~-~~~ll~~le~~-~~---~~~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~d 701 (911)
T KOG2034|consen 627 NPAIHNSLLHLYAKHE-RDDLLLYLEII-KF---MKSRVHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQFD 701 (911)
T ss_pred CHHHHHHHHHHhhcCC-ccchHHHHHHH-hh---ccccceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999987 46677777765 21 1223689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHhcCCCcCcccccCCCCCCcchHHHHHHHHHH
Q 001978 712 PELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSS 791 (987)
Q Consensus 712 i~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~~~~~l~i~dlL~~~p~~~~I~~~Kd~L~~~ 791 (987)
+++|+.+|+.+++|.++||+||+++++|++.+. .++++++.+|+++ ++|+|+|+||+|||+++|++||++||+.
T Consensus 702 ~dlak~~A~~~ee~e~lrKkLWLkIAkh~v~~~-----~~ikk~i~~Lk~~-~lLkiedlLpffpdf~~id~~keaic~~ 775 (911)
T KOG2034|consen 702 IDLAKVIANDPEEDEDLRKKLWLKIAKHVVKQE-----NDIKKAIRFLKEN-ELLTIEDLLPFFPDFTKIDNLKEAICDF 775 (911)
T ss_pred HHHHhhhhcChhhHHHHHHHHHHHHHHHHHHhh-----ccHHHHHHHhccC-cccchhhhhccccchhhhhhhHHHHHHH
Confidence 999999999999899999999999999999874 6899999999995 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCC
Q 001978 792 LDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCG 871 (987)
Q Consensus 792 L~~y~~~i~~l~~~m~~~~~~~~~l~~~i~~~~~r~~~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCg 871 (987)
|++|+.+|++++.+|.+++..+..|+.+++++++||.++++++.|.+|+++|.. + ||+|||||
T Consensus 776 L~~~n~rieel~~em~eat~~a~~I~~~~~~l~~ry~v~ep~d~C~~C~~~ll~-----~------------pF~vf~Cg 838 (911)
T KOG2034|consen 776 LEDYNKRIEELQEEMIEATELADEIRTEISKLRQRYRVLEPQDSCDHCGRPLLI-----K------------PFYVFPCG 838 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcceEEecCccchHHhcchhhc-----C------------cceeeecc
Confidence 999999999999999999999999999999999999999999999999999999 7 99999999
Q ss_pred ChhHHHhHHHHHhhcCCHHHHHHHHHHHHHHHhcccccccccCCCccccccCCCCchhHHHHHHHHHHHhcCCCCchHhH
Q 001978 872 HAFHAQCLIAHVTQCTNETQAEYILDLQKQLTLLGSEARKDANGVTTEDSITSMTPTDKLRSQLDDAIASECPFCGDLMI 951 (987)
Q Consensus 872 H~fH~~CL~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~~~~eC~~Cg~~~i 951 (987)
|+||.+|+++.+.++++.+.+.+- + .....++++++++||+|||+|||+||++||
T Consensus 839 H~FH~~Cl~~~v~~~~~~~~~~~~-------a------------------~~l~~k~~~l~~~l~~iiaaeC~lCg~l~I 893 (911)
T KOG2034|consen 839 HCFHRDCLIRHVLSLLSEELSQKT-------A------------------IELQAKRKKLKNELEDIIAAECPLCGELAI 893 (911)
T ss_pred chHHHHHHHHHHHccccHhhhhhh-------h------------------hhhhhHHHHHHHHHHHHHHhhCccchHHHH
Confidence 999999999999999886621110 0 111245778999999999999999999999
Q ss_pred hhccCCCCCcccccccCcee
Q 001978 952 REISLPFIAPEEAHQFASWE 971 (987)
Q Consensus 952 ~~id~pf~~~~~~~~~~~W~ 971 (987)
++||+||++|+.+ ..+|.
T Consensus 894 ~~Id~Pf~~de~~--~~~W~ 911 (911)
T KOG2034|consen 894 NKIDQPFSDDEQE--LASWN 911 (911)
T ss_pred HhccCCCCCcHHH--hhccC
Confidence 9999999998333 57894
No 2
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-63 Score=564.00 Aligned_cols=710 Identities=19% Similarity=0.258 Sum_probs=525.2
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK 101 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (987)
|+|+|.+|+..++++||++|.|+..+.+.+.-..+. + + ++ |..|.|+..|++ ||.+--....+.+
T Consensus 40 D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~~-~-s----~~------~~~Gey~asCS~---DGkv~I~sl~~~~ 104 (846)
T KOG2066|consen 40 DAISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNFD-H-S----SS------ILEGEYVASCSD---DGKVVIGSLFTDD 104 (846)
T ss_pred hHHHHHHhhcceeeeccccceEEEEecCCccccccc-c-c----cc------ccCCceEEEecC---CCcEEEeeccCCc
Confidence 679999999999999999999999999333211122 1 1 11 889999999999 9988665554443
Q ss_pred c-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCc-EEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccC
Q 001978 102 P-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQ-LHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLS 179 (987)
Q Consensus 102 ~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~-i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~ 179 (987)
- .... .+++|+|||++|+ .+..+++.|+.|+..|. +||..+-++ .+.+ .+.+..|||.+|.|..
T Consensus 105 ~~~~~d--f~rpiksial~Pd-~~~~~sk~fv~GG~aglvL~er~wlgn------k~~v-~l~~~eG~I~~i~W~g---- 170 (846)
T KOG2066|consen 105 EITQYD--FKRPIKSIALHPD-FSRQQSKQFVSGGMAGLVLSERNWLGN------KDSV-VLSEGEGPIHSIKWRG---- 170 (846)
T ss_pred cceeEe--cCCcceeEEeccc-hhhhhhhheeecCcceEEEehhhhhcC------ccce-eeecCccceEEEEecC----
Confidence 2 3344 4579999999954 45567899999999973 234445443 3444 4666678999999973
Q ss_pred CCceEEEEEEC-CCeEEEEecCCchHHHHhhhhcccccccccCCCcCCCcceeeeccCCCceEEEeecCceEEEEeecCC
Q 001978 180 NGTRYYVMAVT-PTRLYSFTGFGSLDTVFASYLDRAVHFMELPGEILNSELHFFIKQRRAVHFAWLSGAGIYHGGLNFGA 258 (987)
Q Consensus 180 ~~~~~~i~ast-~~rly~f~g~~~l~~lf~~~~~~~~~~~elp~~~~~s~l~~~~~~~~~~~faW~t~~gi~~g~i~~~~ 258 (987)
.+|+||+. +.++|.-..+..+ ..+|.+.+ ..++..+|+...|++...+++||.+..
T Consensus 171 ---~lIAWand~Gv~vyd~~~~~~l--------------~~i~~p~~-----~~R~e~fpphl~W~~~~~LVIGW~d~v- 227 (846)
T KOG2066|consen 171 ---NLIAWANDDGVKVYDTPTRQRL--------------TNIPPPSQ-----SVRPELFPPHLHWQDEDRLVIGWGDSV- 227 (846)
T ss_pred ---cEEEEecCCCcEEEecccccee--------------eccCCCCC-----CCCcccCCCceEecCCCeEEEecCCeE-
Confidence 69999986 7889855332222 22332211 123456789999999999999997653
Q ss_pred CCCCCCCCC-cc-ccccccccccccCCCCCCCCCcccccCCceEEEEE--CCEEEEEecCCCce--EEEEEecCCC----
Q 001978 259 QRSSPNGDE-NF-VENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLM--GNKVKVVNRISEQI--IEELQFDQTS---- 328 (987)
Q Consensus 259 ~~~~~~~~~-~~-~~~~~l~~~~~l~~~~~~~~p~si~lT~~h~llL~--~~~l~vvn~l~~~~--v~~~~l~~~~---- 328 (987)
..+.+.+. +. ..+. .+|.. ..+.+++.+-|.|++.++. +++|.++......- -+.-.++...
T Consensus 228 -~i~~I~~~~s~~a~~~------~~~~~-~~V~~~s~f~~s~~isGla~lg~qLv~L~f~~~~~~~e~~s~~~~~r~~~~ 299 (846)
T KOG2066|consen 228 -KICSIKKRSSSEARSF------RLPSL-KKVEIVSHFETSFYISGLAPLGDQLVVLGFDKDISEGEFTSARPSSRAKGN 299 (846)
T ss_pred -EEEEEecccccccccc------cCCcc-ceeeeEEEeeeeeeeeccccccceeEEEeeecccccccccccchhhhccCC
Confidence 11101100 00 0000 11111 1345788888999988775 68888877665311 1111111000
Q ss_pred --------------Cccccceee----------Eeec-cCCCeEEEEeCCcEEEEEcccc-hhhHHHHHHchhhHHHHHH
Q 001978 329 --------------DSISRGIIG----------LCSD-ATAGVFYAYDQNSIFQVSVNDE-GRDMWKVYLDMKEYAAALA 382 (987)
Q Consensus 329 --------------~~~~~~~~g----------l~~D-~~~~~~~i~S~~~i~~~~~~~e-~~~~W~~ll~~~~fe~Al~ 382 (987)
.++.-.++| +.-+ ..++.|||+|+++|+++++++. ||..| ++++++|++||.
T Consensus 300 ~peir~~~~~~~Ei~~Dal~~~~~e~~~~~DY~L~~~~~~~~~yyIvspkDiV~a~~~~~~Dhi~W--ll~~k~yeeAl~ 377 (846)
T KOG2066|consen 300 RPEIRIVSLNNDEICSDALIVRGFEELSINDYHLGGHPKTEPLYYIVSPKDIVVAKERDQEDHIDW--LLEKKKYEEALD 377 (846)
T ss_pred CceEEeccccchhhhhhhhhhcchhhcCCccccccCCCCCCceEEEecCCceEEEeecCcchhHHH--HHHhhHHHHHHH
Confidence 000000111 1111 3578999999999999997776 99999 999999999999
Q ss_pred hcCCc------hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc--CCCChHHHHHHhcCcChHHHHHHHHHHHhhccC---
Q 001978 383 NCRDP------LQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YILSFEEITLKFISVSEQDALRTFLLRKLDNLA--- 451 (987)
Q Consensus 383 ~~~~~------~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~--~~~~~E~v~lkFl~~~~~~~L~~YL~~kl~~l~--- 451 (987)
+++.. .....|+..|.+||+..|+|++||..+.+.. ....||.++.+|...+++..+.+|||+.-++|+
T Consensus 378 ~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~v 457 (846)
T KOG2066|consen 378 AAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLV 457 (846)
T ss_pred HHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchH
Confidence 98731 2468999999999999999999999888765 347999999999999999999999998655444
Q ss_pred ----------CchHHHHHHHHHHHHHHHHHH--HhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHHHHHHHHH
Q 001978 452 ----------KDDKCQITMISTWATELYLDK--INRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLE 519 (987)
Q Consensus 452 ----------~~~~~q~~lL~~Wl~elyl~~--l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~ 519 (987)
.+.+.+...+..|+..+|... +++. ..++++- . ...+ +.+
T Consensus 458 YemvLve~L~~~~~~F~e~i~~Wp~~Lys~l~iisa~------------------~~q~~q~---S----e~~~---L~e 509 (846)
T KOG2066|consen 458 YEMVLVEFLASDVKGFLELIKEWPGHLYSVLTIISAT------------------EPQIKQN---S----ESTA---LLE 509 (846)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhhhHHHhhc------------------chHHHhh---c----cchh---HHH
Confidence 456778889999999999753 2211 2222220 0 0011 222
Q ss_pred HcCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCCc--hhhH---------HhhHHHHHhHChHHHHHHHHc
Q 001978 520 SYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVP--IDLQ---------YKFAPDLIMLDAYETVESWMT 588 (987)
Q Consensus 520 ~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~~--~~li---------~k~~~~Ll~~~p~~ti~~l~~ 588 (987)
. ++.+|..+++|.+|++++.+..+. .+++ .+-...||..+.+++++++++
T Consensus 510 ~-------------------La~LYl~d~~Y~~Al~~ylklk~~~vf~lI~k~nL~d~i~~~Iv~Lmll~skka~~lLld 570 (846)
T KOG2066|consen 510 V-------------------LAHLYLYDNKYEKALPIYLKLQDKDVFDLIKKHNLFDQIKDQIVLLMLLDSKKAIDLLLD 570 (846)
T ss_pred H-------------------HHHHHHHccChHHHHHHHHhccChHHHHHHHHHhhHHHHHHHHHHHHccchhhHHHHHhh
Confidence 2 667888889999999988877652 2333 333456677888899999998
Q ss_pred CC-CCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCC
Q 001978 589 TN-NLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENG 667 (987)
Q Consensus 589 ~~-~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~ 667 (987)
+. .++|..+++++.. .+.++..||..++.++......+|+.+++|||+++ +++|++||+++
T Consensus 571 n~d~ip~a~Vveql~~---------~P~~l~~YL~kl~~rd~~~~~~y~dk~I~LYAEyD-rk~LLPFLr~s-------- 632 (846)
T KOG2066|consen 571 NRDSISPSEVVEQLED---------NPKLLYCYLHKLFKRDHFMGSEYHDKQIELYAEYD-RKKLLPFLRKS-------- 632 (846)
T ss_pred ccccCCHHHHHHHHhc---------ChHHHHHHHHHHhhcCccccchhhhHHHHHHHHHh-HhhhhHHHHhc--------
Confidence 85 8999999999984 35689999999999887778899999999999998 79999999998
Q ss_pred CcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh--cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhcccc
Q 001978 668 PEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ--VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEK 745 (987)
Q Consensus 668 ~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~--~di~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~~~~ 745 (987)
.+|++++|+.+|.+.+++++.||||+|||++.+||.++++ .|+++|++|| +.++|++ ||..++.+++++|+
T Consensus 633 --~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefv-Keq~D~e----LWe~LI~~~ldkPe 705 (846)
T KOG2066|consen 633 --QNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFV-KEQDDSE----LWEDLINYSLDKPE 705 (846)
T ss_pred --CCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHH-HhcCCHH----HHHHHHHHhhcCcH
Confidence 7899999999999999999999999999999999999999 8999999999 5566776 99999999999985
Q ss_pred CCChhhHHHHHHHHHhcCCCcCcccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001978 746 GTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQ 825 (987)
Q Consensus 746 ~~~~~~i~~~l~~L~~~~~~l~i~dlL~~~p~~~~I~~~Kd~L~~~L~~y~~~i~~l~~~m~~~~~~~~~l~~~i~~~~~ 825 (987)
+ ++.+++++..-+|++ |+..+|+++.|+++||.|.++|++|+.+.+..+.-.+.....+..+..++.+.++
T Consensus 706 ~-----~~~ll~i~~~~dpl~----ii~kip~g~~IPnLrdsl~Kil~dy~~q~el~~~c~~i~~nd~~~l~~k~~~~~~ 776 (846)
T KOG2066|consen 706 F-----IKALLNIGEHEDPLL----IIRKIPDGLEIPNLRDSLVKILQDYNLQLELRQGCYDILKNDSKSLLNKFLKTAR 776 (846)
T ss_pred H-----HHHHHHhhhcccHHH----HHhcCCCCCCCccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 555556444334444 5556999999999999999999999999887775555555567788888888999
Q ss_pred ccccccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhc
Q 001978 826 RYAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886 (987)
Q Consensus 826 r~~~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~ 886 (987)
|++.+.-..+|+.|..+....+..|. .++||.|||.||..|+..+....
T Consensus 777 ~Gv~v~~e~rc~~c~~~~l~~~~~~~------------~~~v~~c~h~yhk~c~~~~~~~~ 825 (846)
T KOG2066|consen 777 RGVLVSVEERCSSCFEPNLPSGAAFD------------SVVVFHCGHMYHKECLMMESLRN 825 (846)
T ss_pred cCeeEeehhhhhhhcccccccCcccc------------eeeEEEccchhhhcccccHHHhc
Confidence 99999889999999999998543322 79999999999999998776443
No 3
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-45 Score=420.62 Aligned_cols=743 Identities=16% Similarity=0.219 Sum_probs=469.8
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC-------------
Q 001978 23 VITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG------------- 89 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~------------- 89 (987)
+|+|..-+.+.+++|+..|.|..++-.-.....++... .+.|..+|++-. +..++|..-.+.
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~----~siv~~L~~~~~-~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYE----QSIVQFLYILNK-QNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceeeehheecc----hhhhhHhhcccC-ceEEEEEeecCCCCceEEEEecccc
Confidence 89999999999999999999999876212223444331 123666666533 223333220011
Q ss_pred ------ccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCC
Q 001978 90 ------AETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE 163 (987)
Q Consensus 90 ------g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~ 163 (987)
...+|.|+-.+-.-+. .-.++.+++-..+ -..|++|=.+|.|+-+.=+. ..|+..|+-|..++
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~---~~~p~s~l~Vs~~------l~~Iv~Gf~nG~V~~~~GDi--~RDrgsr~~~~~~~ 170 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPT---NPSPASSLAVSED------LKTIVCGFTNGLVICYKGDI--LRDRGSRQDYSHRG 170 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCC---CCCcceEEEEEcc------ccEEEEEecCcEEEEEcCcc--hhccccceeeeccC
Confidence 1222333222211110 1246677777632 34799999999888764221 34677788888876
Q ss_pred CCCceeeEEEEeeccCCCceEEEEEECCC--eEEEEecCCchHHHHhhhhcccccccccCCCcCCCcceeeeccCCCceE
Q 001978 164 LPEAFMGLQMETASLSNGTRYYVMAVTPT--RLYSFTGFGSLDTVFASYLDRAVHFMELPGEILNSELHFFIKQRRAVHF 241 (987)
Q Consensus 164 ~~~~I~gi~~~~~~~~~~~~~~i~ast~~--rly~f~g~~~l~~lf~~~~~~~~~~~elp~~~~~s~l~~~~~~~~~~~f 241 (987)
. +||||+.+..- ...++||+|+. .+|-..|+++...+-+ +.. + .+..+........|
T Consensus 171 ~-~pITgL~~~~d-----~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld---~~G-----~-------~lnCss~~~~t~qf 229 (933)
T KOG2114|consen 171 K-EPITGLALRSD-----GKSVLFVATTEQVMLYSLSGRTPSLKVLD---NNG-----I-------SLNCSSFSDGTYQF 229 (933)
T ss_pred C-CCceeeEEecC-----CceeEEEEecceeEEEEecCCCcceeeec---cCC-----c-------cceeeecCCCCccE
Confidence 4 78999999742 13335555655 6665555442111000 000 0 01111111111234
Q ss_pred EEeecCceEEEEeecCCCCCCCCCCCccccccccccccccCCCCCCCCCcccccCCceEEEEEC-CEEEEEecCCCceEE
Q 001978 242 AWLSGAGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLMG-NKVKVVNRISEQIIE 320 (987)
Q Consensus 242 aW~t~~gi~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~p~si~lT~~h~llL~~-~~l~vvn~l~~~~v~ 320 (987)
.-..+.++|+-+-+-. ..++ .+.+..=|..+.++ +.+.+|..-.+-...
T Consensus 230 Ica~~e~l~fY~sd~~--------~~cf----------------------af~~g~kk~~~~~~~g~~L~v~~~~~~~~~ 279 (933)
T KOG2114|consen 230 ICAGSEFLYFYDSDGR--------GPCF----------------------AFEVGEKKEMLVFSFGLLLCVTTDKGTENT 279 (933)
T ss_pred EEecCceEEEEcCCCc--------ceee----------------------eecCCCeEEEEEEecCEEEEEEccCCCCCc
Confidence 4445555555221100 0111 11111122222222 222222222221111
Q ss_pred EEEecCC-----CCccccceee--E----eecc---CCCeEEEEeCCcEEEEEcccchhhHHHHHHchhhHHHHHHhcCC
Q 001978 321 ELQFDQT-----SDSISRGIIG--L----CSDA---TAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCRD 386 (987)
Q Consensus 321 ~~~l~~~-----~~~~~~~~~g--l----~~D~---~~~~~~i~S~~~i~~~~~~~e~~~~W~~ll~~~~fe~Al~~~~~ 386 (987)
..+..+. -..-..+..+ . ..|. .+..++++|.+++..-.++.....+..+++++++|+.|+.+|+.
T Consensus 280 s~s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~ 359 (933)
T KOG2114|consen 280 SLSNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKS 359 (933)
T ss_pred ccCccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHh
Confidence 1000000 0000001100 0 0111 12367777776655444444455566789999999999999984
Q ss_pred ----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCChHHHHHHhcCcChHHHHHHHHHHHhhccCCchHHHHHHHH
Q 001978 387 ----PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMIS 462 (987)
Q Consensus 387 ----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~~~E~v~lkFl~~~~~~~L~~YL~~kl~~l~~~~~~q~~lL~ 462 (987)
+..+..|+++||+|||.+|+|++|+.+|.++.+.....+||.+|++++.+..|..||++....-.. .+.+.++
T Consensus 360 ~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttl-- 436 (933)
T KOG2114|consen 360 QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTL-- 436 (933)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHH--
Confidence 456899999999999999999999999999997788999999999999999999999986654322 2233344
Q ss_pred HHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccc---cCCHHHHHHHHHHcCChhHHHHHHHhHhhHHH
Q 001978 463 TWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKD---VLDEATTMKLLESYGRVEELVFFASLKEQHEI 539 (987)
Q Consensus 463 ~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~---~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ 539 (987)
|+.+|. ++.+ .+++++|++.... .+|.+++..+|...++.+++.++|++.+.++.
T Consensus 437 --LLncYi-Klkd-------------------~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~ 494 (933)
T KOG2114|consen 437 --LLNCYI-KLKD-------------------VEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEW 494 (933)
T ss_pred --HHHHHH-Hhcc-------------------hHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHH
Confidence 344454 2222 3677888875431 46999999999999999999999999999999
Q ss_pred HHHHHHh-cccHHHHHHHHhCCCC--chhhHHhhHHHHHhHChHHHHHHHHcCC-CC-------------CCCcchhhhh
Q 001978 540 VVHHYIQ-QGEAKKALQMLRKPAV--PIDLQYKFAPDLIMLDAYETVESWMTTN-NL-------------NPRKLIPAMM 602 (987)
Q Consensus 540 ll~~yi~-~~~~~~AL~~l~~~~~--~~~li~k~~~~Ll~~~p~~ti~~l~~~~-~l-------------d~~~lip~L~ 602 (987)
++...++ .++|++||+++.+++- ....+.+|+.+||.+.|++|++++++.- .. ++.+.++.++
T Consensus 495 vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~ 574 (933)
T KOG2114|consen 495 VLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILLEHDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFS 574 (933)
T ss_pred HHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeec
Confidence 9987775 5889999999999974 3467889999999999999999998751 11 1111222222
Q ss_pred hcCCCCCCCCChHHHHHHHHHHHhhcCCCC--hhHHHHHHHHhh----------------------cC----CCh-HH--
Q 001978 603 RYSSEPHAKNETHEVIKYLEFCVHRLHNED--PGVHNLLLSLYA----------------------KQ----EDD-SA-- 651 (987)
Q Consensus 603 ~~~~~~~~~~~~~~~~~YLe~li~~~~~~~--~~ihn~ll~Ly~----------------------~~----~~~-~k-- 651 (987)
.++.....||+.+....+... ..+..+..+++. ++ .|+ .+
T Consensus 575 ---------~~~~~~~~Fl~~~~E~s~~s~e~~~i~~t~~~~~l~~~sf~~~~~~~n~~~~l~h~~~~~~~~sdpq~kt~ 645 (933)
T KOG2114|consen 575 ---------QNYQILLNFLESMSEISPDSEEVLEIIYTLLELSLMQKSFVTKPFEFNLEAELAHYQQYEGFDSDPQVKTT 645 (933)
T ss_pred ---------cCHHHHHHHHHHHHhcCCCchhhhccccchhhhhhhhccccccchhhccHHHHHHHHhhcccccChhhhhc
Confidence 134455666665433221110 011111111111 00 000 00
Q ss_pred -----HHH-----------HHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh-cCHHH
Q 001978 652 -----LLR-----------FLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ-VDPEL 714 (987)
Q Consensus 652 -----Ll~-----------fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~-~di~l 714 (987)
-++ ++.++ ++. .+...++||.+.||-+|+-+++.++..|+|+++|.+.+-+..... .|+|.
T Consensus 646 ~~~~l~~~~~~~~~~~~~~~l~ks-n~l-~d~~~~nvd~d~al~l~qm~df~dg~ly~~~k~k~~~dl~~~~~q~~d~E~ 723 (933)
T KOG2114|consen 646 TLYDLYLELDAEDVPERTIILRKS-NKL-LDYAASNVDEDAALLLSQMSDFTDGLLYSYEKLKEGQDLMLYFQQISDPET 723 (933)
T ss_pred cchhhHHHHHhhhcccccchhhhh-cch-hhhhhccccchHHHHHHHHhCCCchHHHHHhhccchHHHHHHHHHhhChHH
Confidence 001 11111 111 122235799999999999999999999999999999999999888 89999
Q ss_pred HHHHhhccCC-CHHHHHHHHHHHHHHHhccccC-CChhhHHHHHHHHHhcCCCcCcccccCCC--CCCcchHHHHHHHHH
Q 001978 715 AMAEADKVED-DEDLRKKLWLMVAKHVIEQEKG-TKRENIRKAIAFLKETDGLLKIEDILPFF--PDFALIDDFKEAICS 790 (987)
Q Consensus 715 A~~~~~~~~~-d~~~~kkLWl~ll~~~i~~~~~-~~~~~i~~~l~~L~~~~~~l~i~dlL~~~--p~~~~I~~~Kd~L~~ 790 (987)
++.+|++... |+ +||..+++|.++...- .+.+.++++++.+.... .+.+..||..+ +...++..+||+|.+
T Consensus 724 ~it~~~~~g~~~p----~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~-~ippl~VL~~Lakn~~ltls~IkD~ii~ 798 (933)
T KOG2114|consen 724 VITLCERLGKEDP----SLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQE-RIPPLHVLQILAKNGTLTLSVIKDYIIK 798 (933)
T ss_pred HHHHHHHhCccCh----HHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcc-cCCHHHHHHHHhcCCceEEehhHHHHHH
Confidence 9999987653 34 4999999999987521 11346777777665543 44444444443 346789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhhcccccccccccCCCCCCCCEEEEcC
Q 001978 791 SLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPC 870 (987)
Q Consensus 791 ~L~~y~~~i~~l~~~m~~~~~~~~~l~~~i~~~~~r~~~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpC 870 (987)
.|+.|+.+|++.+..++.+.+..+++++++..++.+..++ +.++|+.|+-+|.. |+|+|.|
T Consensus 799 ~l~~~~~~I~qd~~~Ie~yk~~i~e~r~~l~~lr~sa~i~-q~skCs~C~~~Ldl------------------P~VhF~C 859 (933)
T KOG2114|consen 799 WLNKYSTIIEQDEDAIEVYKKDIEEKRQELETLRTSAQIF-QVSKCSACEGTLDL------------------PFVHFLC 859 (933)
T ss_pred HHHhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhhccccee-eeeeecccCCcccc------------------ceeeeec
Confidence 9999999999999999999999999999999999886555 57999999999998 9999999
Q ss_pred CChhHHHhHHH--HHhhcCCHHHH
Q 001978 871 GHAFHAQCLIA--HVTQCTNETQA 892 (987)
Q Consensus 871 gH~fH~~CL~~--~~~~~~~~~~~ 892 (987)
||+||++|+++ ..+|-|-++.|
T Consensus 860 gHsyHqhC~e~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 860 GHSYHQHCLEDKEDKCPKCLPELR 883 (933)
T ss_pred ccHHHHHhhccCcccCCccchhhh
Confidence 99999999993 34555555443
No 4
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-34 Score=343.08 Aligned_cols=531 Identities=18% Similarity=0.279 Sum_probs=388.0
Q ss_pred CCcccccCCceEEEEECCEEEEEecCCCceEEEE-EecCCCCccccceeeEeeccCCCeEEEEeCCcEEEEEcccchhhH
Q 001978 289 KPGSMAVSEYHFLLLMGNKVKVVNRISEQIIEEL-QFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDM 367 (987)
Q Consensus 289 ~p~si~lT~~h~llL~~~~l~vvn~l~~~~v~~~-~l~~~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e~~~~ 367 (987)
.|.+++.+.+|++++.+..+.|.+..+++.||+. ++. +...++. ...+++|+.+..++|.+.+....+..
T Consensus 243 ~P~~v~~~~PYlIa~~~~~veI~s~~~~qlvQSI~~~~--------~~~~l~s-~~~~i~~~~~~s~v~~L~p~~~~~~q 313 (877)
T KOG2063|consen 243 VPLSVVVESPYLIALLDRSVEIRSKLDGQLVQSITPLS--------NGRSLLS-AHNGIIFVASLSNVWILVPVSNFEKQ 313 (877)
T ss_pred cchhhcccCceEEEEccccEEEEeccCHHHhhcccccc--------ccceeee-cCCcEEEEEeccceEEEEeccchHHH
Confidence 5899999999999999999999999999999988 552 3333443 34599999999999999988844444
Q ss_pred HHHHHchhhHHHHHHhcCC-----chhHh---HHHHHH-HHHHHhcCCHHHHHHHHHhhcCCCChHHHHHHhcCc--ChH
Q 001978 368 WKVYLDMKEYAAALANCRD-----PLQRD---QVYLVQ-AEAAFATKDFHRAASFYAKINYILSFEEITLKFISV--SEQ 436 (987)
Q Consensus 368 W~~ll~~~~fe~Al~~~~~-----~~~~~---~V~~~~-~~~l~~~g~y~~Aa~~~~~~~~~~~~E~v~lkFl~~--~~~ 436 (987)
-+.|+..+.|++|+.+++. |.... .+...+ |..+|.+|+|++|++.|.++. ...-.|+..|.+. ...
T Consensus 314 i~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~--~d~~~vi~lfP~l~p~~~ 391 (877)
T KOG2063|consen 314 IQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE--IDPRHVISLFPDLLPSEN 391 (877)
T ss_pred HHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc--cChHHHHHhchhhcCCcc
Confidence 4668888899999999873 33333 344455 777999999999999999997 5666777777631 111
Q ss_pred ---------H----------------HHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHH
Q 001978 437 ---------D----------------ALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEY 491 (987)
Q Consensus 437 ---------~----------------~L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~ 491 (987)
. ++..|+........+ -+... ...|. +.+.... .+ +-..+..
T Consensus 392 ~~~~~~~~vp~~~~~~~~~~~v~a~l~~~~ylt~~r~~~~~-------~l~~~-~m~~~---~~~~~~~-~s-~~~~~~~ 458 (877)
T KOG2063|consen 392 SSIEFTGVVPIRAPELRGGDLVPAVLALIVYLTQSRREENK-------KLNKY-KMLYM---NYFKNTL-IS-ELLKSDL 458 (877)
T ss_pred cccceeeeccCchhhhccCcccchhhhhhhHhHHHHHHHHH-------HHHHh-hhhHH---hhhhccC-cc-hhhccch
Confidence 0 222333321100000 00000 00000 0000000 00 0000011
Q ss_pred HHHHHHHHH-HHhhccccCCHHHHHHHHHH---cCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCC-----
Q 001978 492 QSIMREFRA-FLSDCKDVLDEATTMKLLES---YGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAV----- 562 (987)
Q Consensus 492 ~~~~~~l~~-fl~~~~~~ld~~tv~~ll~~---~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~----- 562 (987)
..+.+.+.. .++.|. ..|+..+..+++. ++..+++-..-++.+.|..++.+|-..|++++||++|.++.+
T Consensus 459 ~~~~~~IDttLlk~Yl-~~n~~~v~~llrlen~~c~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~ 537 (877)
T KOG2063|consen 459 NDILELIDTTLLKCYL-ETNPGLVGPLLRLENNHCDVEEIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVDEDSDT 537 (877)
T ss_pred HHHHHHHHHHHHHHHH-hcCchhhhhhhhccCCCcchHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhcccccc
Confidence 111122221 122221 2255555565553 566777777777888888888888888888888888875432
Q ss_pred ---------------------chhhHHhhHHHHHhHChHHHHHHHHcC-----CCCCCCcchhhhhhcCCCCCCCCChHH
Q 001978 563 ---------------------PIDLQYKFAPDLIMLDAYETVESWMTT-----NNLNPRKLIPAMMRYSSEPHAKNETHE 616 (987)
Q Consensus 563 ---------------------~~~li~k~~~~Ll~~~p~~ti~~l~~~-----~~ld~~~lip~L~~~~~~~~~~~~~~~ 616 (987)
..+++++|+.|++..+|..++++|... +.+++++++..|... .+..
T Consensus 538 d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~--------~~~l 609 (877)
T KOG2063|consen 538 DSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSK--------EPKL 609 (877)
T ss_pred ccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhh--------Ccch
Confidence 147999999999999999999999872 479999999888764 3567
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHhhcCC---------------C--hHHHHHHHHHhhCCCCCCCCcccCChHHHHH
Q 001978 617 VIKYLEFCVHRLHNEDPGVHNLLLSLYAKQE---------------D--DSALLRFLQCKFGKGRENGPEFFYDPKYALR 679 (987)
Q Consensus 617 ~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~---------------~--~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLr 679 (987)
+++|||+++......++.+|+.|+.||++.- . +++|..||..+ ..||++..|.
T Consensus 610 ~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s----------~~Y~p~~~L~ 679 (877)
T KOG2063|consen 610 LIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESS----------DLYDPQLLLE 679 (877)
T ss_pred hHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhh----------cccCcchhhh
Confidence 9999999999998889999999999998721 1 57889999988 6799999988
Q ss_pred HHHhcCcceeeehhhhccccHHHHHHHHHh--cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhccccCCChhhHHHHHH
Q 001978 680 LCLKEKRMRACVHIYGMMSMHEEAVALALQ--VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIA 757 (987)
Q Consensus 680 lc~~~~~~~~~v~L~~~~g~~~eAl~l~l~--~di~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~ 757 (987)
-....+++++++.|++|||.|++||+++++ +|++.|..||....++.+.+++.++++++.++...... ...-..+++
T Consensus 680 ~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~~~d~-~~~~~~il~ 758 (877)
T KOG2063|consen 680 RLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNPIHDY-KSGPLYILN 758 (877)
T ss_pred hccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcchhhc-cccchhhhh
Confidence 888899999999999999999999999999 89999999998776544457789999999998872111 123456678
Q ss_pred HHHhcCCCcCcccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcccccccccc
Q 001978 758 FLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIR--NDISALAQRYAVIDRDED 835 (987)
Q Consensus 758 ~L~~~~~~l~i~dlL~~~p~~~~I~~~Kd~L~~~L~~y~~~i~~l~~~m~~~~~~~~~l~--~~i~~~~~r~~~i~~~~~ 835 (987)
||+.+...+....+++.+|+.+.+.++.+.+.+.|+....+... .+|..+..+++.+. .++.+.++..++|.....
T Consensus 759 ~l~~h~~r~d~~~~~~~Lp~~~sl~~~~~~l~~~Lr~~~~~~r~--~q~~~~l~q~E~~~~~~~l~~~~s~~~~l~~~~~ 836 (877)
T KOG2063|consen 759 FLQKHADRLDLAQVLKLLPDDISLKDLCSFLSKLLRKRFEALRT--TQVQKSLLQAELLPSTEELNKLRSSKIQLNDESL 836 (877)
T ss_pred HHHhhhhhcCHHHHHHhCCccCcHhHHHHHHHHHHHHHHHhcch--hHHHHHHHHHhhcchHHHHHHhhcceEEEchhhH
Confidence 89888889999999999999999999999999999976544333 33444555556554 456677788899999999
Q ss_pred ccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHH
Q 001978 836 CGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAH 882 (987)
Q Consensus 836 C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~ 882 (987)
|.+|.+++.. + .|++||-|+..|..|..+.
T Consensus 837 C~~C~k~i~~-----s------------~f~ryp~g~lvh~~C~~~~ 866 (877)
T KOG2063|consen 837 CSICEKRIGT-----S------------VFVRYPNGILVHLSCAKDL 866 (877)
T ss_pred hHHHHhhhcC-----e------------eEEECCCCcEEEEEeechh
Confidence 9999999998 5 8999999999999998754
No 5
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=99.97 E-value=2.1e-30 Score=251.59 Aligned_cols=146 Identities=43% Similarity=0.821 Sum_probs=130.7
Q ss_pred ceEEEEeecCCCCCCCCCCCccccccccccccccCCCCCCCCCcccccCCceEEEEECCEEEEEecCCCceEEEEEecCC
Q 001978 248 GIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLMGNKVKVVNRISEQIIEELQFDQT 327 (987)
Q Consensus 248 gi~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~p~si~lT~~h~llL~~~~l~vvn~l~~~~v~~~~l~~~ 327 (987)
|||||+++..++.+ +.++.+.+++++++++... ..|+||++|+||+++|++++|+|+|++|+++|+++.+.
T Consensus 1 GI~~G~l~~~~~~~-----~~v~~~~~~l~~~~~~~~~--~~p~si~lT~~H~llL~~~~l~~vn~L~~~vV~e~~~~-- 71 (147)
T PF05131_consen 1 GIYHGNLNFGSQNS-----ENVLSNAKLLPYSELPNSS--SPPLSIALTEFHLLLLYSDRLIAVNRLNNKVVFEESLL-- 71 (147)
T ss_pred CeEEEeecCCCCcc-----cccccchhhcccccCCCCC--CCcceEEeeceeeeEEeCCEEEEEEecCCcEEEEEEec--
Confidence 89999999864432 2345566678888877643 35999999999999999999999999999999999993
Q ss_pred CCccccceeeEeeccCCCeEEEEeCCcEEEEEcccchhhHHHHHHchhhHHHHHHhcCC-chhHhHHHHHHHHHHHhc
Q 001978 328 SDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCRD-PLQRDQVYLVQAEAAFAT 404 (987)
Q Consensus 328 ~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e~~~~W~~ll~~~~fe~Al~~~~~-~~~~~~V~~~~~~~l~~~ 404 (987)
.+.|+++||++|+.+++||+||++.||++.+++|+|++|++||++|+|++|+++|++ +.+|+.|+.++|++||++
T Consensus 72 --~~~~~~~gl~~D~~~~t~W~ys~~~I~ei~i~~E~r~vWk~yl~~~~fd~Al~~~~~~~~~~d~V~~~qa~~lf~k 147 (147)
T PF05131_consen 72 --ETGGKILGLCRDPSSNTFWLYSSNSIFEIVINNEDRDVWKIYLDKGDFDEALQYCKTNPAQRDQVLIKQADHLFQK 147 (147)
T ss_pred --cCCcceeeEEEcCCCCeEEEEeCCeeEEEEcCcchHHHHHHHHhcCcHHHHHHHccCCHHHHHHHHHHHHHHHhhC
Confidence 236899999999999999999999999999999999999999999999999999998 999999999999999975
No 6
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=99.66 E-value=1.2e-16 Score=150.09 Aligned_cols=107 Identities=28% Similarity=0.532 Sum_probs=94.5
Q ss_pred HHHHhcCCCcCcccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 001978 757 AFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDC 836 (987)
Q Consensus 757 ~~L~~~~~~l~i~dlL~~~p~~~~I~~~Kd~L~~~L~~y~~~i~~l~~~m~~~~~~~~~l~~~i~~~~~r~~~i~~~~~C 836 (987)
++|+++++.|.+.+||+++|++++|++++++|+++|+.+..++...+............++.++.+.+++++.|++++.|
T Consensus 2 ~lL~~~~~~ld~~~vL~~LP~~~~l~~l~~fl~~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~v~i~~~~~C 81 (109)
T PF10367_consen 2 ELLNEHGSRLDPIDVLKLLPDDWPLSDLSDFLCKSLRKYSNRKRESQIEKNLLKSENLQLKYELVKLRSRSVVITESTKC 81 (109)
T ss_pred hhHHhccccCCHHHHHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCceEEECCCCCc
Confidence 57888778999999999999999999999999999999998887766555555455666778888899999999999999
Q ss_pred cccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHH
Q 001978 837 GVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLI 880 (987)
Q Consensus 837 ~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~ 880 (987)
++|+|+|.+ + +|+||||||+||..|..
T Consensus 82 ~vC~k~l~~-----~------------~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 82 SVCGKPLGN-----S------------VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred cCcCCcCCC-----c------------eEEEeCCCeEEeccccc
Confidence 999999998 5 99999999999999974
No 7
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=99.65 E-value=7e-16 Score=151.74 Aligned_cols=130 Identities=22% Similarity=0.342 Sum_probs=115.2
Q ss_pred CCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHH-HhhCCCCCCCCc
Q 001978 591 NLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQ-CKFGKGRENGPE 669 (987)
Q Consensus 591 ~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~-~~~~~~~~~~~~ 669 (987)
.++++++|+.+.... .+++++.||++++... ..++.+||+|+++|++++ +.++++||+ ++
T Consensus 7 ~~~~~~vv~~~~~~~-------~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~~~---------- 67 (140)
T smart00299 7 PIDVSEVVELFEKRN-------LLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDNKS---------- 67 (140)
T ss_pred cCCHHHHHHHHHhCC-------cHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHhcc----------
Confidence 678889999998643 3678999999999885 478899999999999987 689999999 44
Q ss_pred ccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh--cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhccc
Q 001978 670 FFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ--VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQE 744 (987)
Q Consensus 670 ~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~--~di~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~~~ 744 (987)
..||+++|+++|.++++++++++||+++|+|++||+++++ +|++.|+++|.+.. +++ +|..+++++++.+
T Consensus 68 ~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~-~~~----lw~~~~~~~l~~~ 139 (140)
T smart00299 68 NHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQN-NPE----LWAEVLKALLDKP 139 (140)
T ss_pred ccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCC-CHH----HHHHHHHHHHccC
Confidence 5799999999999999999999999999999999999998 69999999997654 444 9999999998764
No 8
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=99.37 E-value=4.8e-14 Score=139.21 Aligned_cols=134 Identities=33% Similarity=0.508 Sum_probs=113.4
Q ss_pred CCCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCc
Q 001978 590 NNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPE 669 (987)
Q Consensus 590 ~~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~ 669 (987)
...++..+|..+.... .+..++.||+.++.+....++.+|+.|+.+|++.++.++|++||+++
T Consensus 6 ~~~~~~~vi~~~~~~~-------~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---------- 68 (143)
T PF00637_consen 6 DPLEISEVISAFEERN-------QPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---------- 68 (143)
T ss_dssp TTSCSCCCHHHCTTTT--------GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS----------
T ss_pred CccCHHHHHHHHHhCC-------CHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc----------
Confidence 3678888888887632 35678899999998777788999999999999998558999999977
Q ss_pred ccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh-cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhcccc
Q 001978 670 FFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ-VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEK 745 (987)
Q Consensus 670 ~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~-~di~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~~~~ 745 (987)
..||++.|+++|.++++++++++||+++|+|++|++++.. +|++.|+++|.+.. |++ +|..+++++++.+.
T Consensus 69 ~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~-~~~----l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 69 NNYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVD-DPE----LWEQLLKYCLDSKP 140 (143)
T ss_dssp SSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCS-SSH----HHHHHHHHHCTSTC
T ss_pred cccCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcC-cHH----HHHHHHHHHHhcCc
Confidence 5699999999999999999999999999999999998444 78999999997765 444 99999999998753
No 9
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=1.3e-07 Score=113.21 Aligned_cols=327 Identities=17% Similarity=0.188 Sum_probs=186.4
Q ss_pred cCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCCc----hhhHHh-------------hHHHHHh---HChH
Q 001978 521 YGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVP----IDLQYK-------------FAPDLIM---LDAY 580 (987)
Q Consensus 521 ~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~~----~~li~k-------------~~~~Ll~---~~p~ 580 (987)
+-..++-+.-|+..+.|..+..+|.+.++|+.||+.+...++- .+.+++ +-..+++ ..-.
T Consensus 788 ~~~de~~il~a~~~~~y~Vl~hi~~k~~kyed~l~~iLe~n~ek~~~~~fvs~e~e~l~~~~~~fr~l~~i~e~fti~~~ 867 (1206)
T KOG2079|consen 788 SRTDENFILEAKEKNFYKVLFHIYKKENKYEDALSLILETNDEKEYNTDFVSIEDEILKKCPPGFRELGKITEVFTIFDL 867 (1206)
T ss_pred ccChHHHHHHhhhcccceeHHHHHhhhhhHHHHHHHHHHhhhhhccccceEeeehhhhccCCcchHHHHHHHhhccchHH
Confidence 3455666888888899999999999999999999988765420 011111 1111111 1122
Q ss_pred HHHHHHHcCC-----CCCCCcch-hhhhhcCCCCCCCCChHHHHHHHHHHHhhcC---CCChhHHHHHHHHhhcC-CChH
Q 001978 581 ETVESWMTTN-----NLNPRKLI-PAMMRYSSEPHAKNETHEVIKYLEFCVHRLH---NEDPGVHNLLLSLYAKQ-EDDS 650 (987)
Q Consensus 581 ~ti~~l~~~~-----~ld~~~li-p~L~~~~~~~~~~~~~~~~~~YLe~li~~~~---~~~~~ihn~ll~Ly~~~-~~~~ 650 (987)
.++.+++.+. .++.. +. ..++- .....-.||..+++... ..+..+.+..+++||+. ..++
T Consensus 868 ~~~rlli~hc~d~fa~~~~n-~~re~l~v---------~l~l~~k~l~Klfs~~si~neLd~~l~el~~E~~ckwm~sre 937 (1206)
T KOG2079|consen 868 LLSRLLIEHCVDIFADFDYN-LHREILEV---------KLELTQKYLDKLFSTPSINNELDKRLRELHIELNCKWMSSRE 937 (1206)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH---------hHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHhccccchh
Confidence 2333333220 00000 00 00111 12234478888877654 34678899999999994 4344
Q ss_pred HHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcC--cceeeehhhhccccHHHHHHHHHh-----cC--------HHHH
Q 001978 651 ALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEK--RMRACVHIYGMMSMHEEAVALALQ-----VD--------PELA 715 (987)
Q Consensus 651 kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~--~~~~~v~L~~~~g~~~eAl~l~l~-----~d--------i~lA 715 (987)
.++.|...-. .+-.-.+.|.+...+. ..+..++++.....+.+|..+... .+ .++.
T Consensus 938 ~Il~f~~~v~---------~nag~~~~l~ll~~~s~h~~r~vI~e~l~~~~~a~af~l~feel~~nk~~~ni~s~~~~~t 1008 (1206)
T KOG2079|consen 938 MILWFNGTVL---------SNAGSLQILDLLNQDSNHEARAVIHERLESFNLAVAFLLSFEELCLNKGKTNISSLLESLT 1008 (1206)
T ss_pred HHHHHHHHHH---------hccchHHHHHHHhcChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4777733320 0112355677776664 344556666666667777766554 11 3445
Q ss_pred HHHhhccC-CCH--HHHHHHHHHHHHHHhccccCCChhhHHHH-----HHHHHhcCCCcCcccccCCCCC--CcchHHHH
Q 001978 716 MAEADKVE-DDE--DLRKKLWLMVAKHVIEQEKGTKRENIRKA-----IAFLKETDGLLKIEDILPFFPD--FALIDDFK 785 (987)
Q Consensus 716 ~~~~~~~~-~d~--~~~kkLWl~ll~~~i~~~~~~~~~~i~~~-----l~~L~~~~~~l~i~dlL~~~p~--~~~I~~~K 785 (987)
+.+++... ++. ..-.+||..+++.+..-++..+ ..+.+. ++++.... ...+..+|. -++ .++++|+|
T Consensus 1009 ms~~d~~ss~t~ts~r~erl~~~l~t~v~~fee~~e-~~~~ksl~~~~lqlv~t~~-~~~~~~lLe-~~~nv~~tf~D~k 1085 (1206)
T KOG2079|consen 1009 MSFDDCNSSGTETSSRWERLITFLITLVGKFEEHDE-DLCNKSLQEAFLQLVRTKS-SSQMSSLLE-HQDNVLMTFQDLK 1085 (1206)
T ss_pred HHHhhhhccCCccHHHHHHHHHHHHHHhccchhhhH-HHHHHHHHHHHHHHHHhcc-HHHHHHHHc-CCccceeehhhHH
Confidence 55554332 221 1223567777777665443322 112222 23332211 111333333 233 46899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccccccccccchhhhhcccccccccccCCCCCCCC
Q 001978 786 EAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQ-RYAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAP 864 (987)
Q Consensus 786 d~L~~~L~~y~~~i~~l~~~m~~~~~~~~~l~~~i~~~~~-r~~~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~ 864 (987)
+.|..+++.|..+.+..+........+...+..+.+.... |++.+. ...|..|+++++. +. .
T Consensus 1086 qlLl~~~~s~~~e~el~~~s~kii~~~~l~l~~~~r~~~shr~~~ih-t~~c~~c~q~~~~-h~---------------~ 1148 (1206)
T KOG2079|consen 1086 QLLLNVFNSYKLERELSELSQKIIEDSSLDLVQQYRKFLSHRGWSIH-TDDCEICGQKIWA-HL---------------D 1148 (1206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhhccCceec-CcchHhhhhhhhc-cC---------------c
Confidence 9999999999887776654444443555566666655444 788885 7899999999984 22 4
Q ss_pred EEEEc-CCChhHHHhHHHHHhhc
Q 001978 865 FYVFP-CGHAFHAQCLIAHVTQC 886 (987)
Q Consensus 865 fvvFp-CgH~fH~~CL~~~~~~~ 886 (987)
-++|. |||.-|..|..+--.++
T Consensus 1149 ~~~Fl~wgh~qh~qc~~~~d~~c 1171 (1206)
T KOG2079|consen 1149 PLLFLAWGHVQHHQCMISVDLKC 1171 (1206)
T ss_pred chheeeccchhhHHHHHHHhhcC
Confidence 56676 99999999998765433
No 10
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=7.8e-06 Score=97.28 Aligned_cols=209 Identities=17% Similarity=0.256 Sum_probs=143.2
Q ss_pred HHHHhhccccCCHHHHHHHHHH------------cCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCCchhh
Q 001978 499 RAFLSDCKDVLDEATTMKLLES------------YGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDL 566 (987)
Q Consensus 499 ~~fl~~~~~~ld~~tv~~ll~~------------~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~~~~l 566 (987)
..||+++. ..|..+|=..|+. -+...+++..+..+.-|...++|...+.+.+---++|...+.
T Consensus 890 E~fLkeN~-yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~---- 964 (1666)
T KOG0985|consen 890 ERFLKENP-YYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENP---- 964 (1666)
T ss_pred HHhcccCC-cchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccCh----
Confidence 35666532 2345555555544 255567777777777777777777776663333333322111
Q ss_pred HHhhHHHHHhHChHHHHHHHHcCCCCCCCcc---hhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCC--CChhHHHHHHH
Q 001978 567 QYKFAPDLIMLDAYETVESWMTTNNLNPRKL---IPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHN--EDPGVHNLLLS 641 (987)
Q Consensus 567 i~k~~~~Ll~~~p~~ti~~l~~~~~ld~~~l---ip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~--~~~~ihn~ll~ 641 (987)
|-+.|++ +.|+.=+. ..-||+.+ +.++|.-+ -+++++..||.++-+... ....+.|+|+
T Consensus 965 ---~rRqLiD----qVv~tal~-E~~dPe~vS~tVkAfMtad-------Lp~eLIELLEKIvL~~S~Fse~~nLQnLLi- 1028 (1666)
T KOG0985|consen 965 ---YRRQLID----QVVQTALP-ETQDPEEVSVTVKAFMTAD-------LPNELIELLEKIVLDNSVFSENRNLQNLLI- 1028 (1666)
T ss_pred ---HHHHHHH----HHHHhcCC-ccCChHHHHHHHHHHHhcC-------CcHHHHHHHHHHhcCCcccccchhhhhhHH-
Confidence 1122221 11111110 13455543 55666533 367899999999876543 3457788777
Q ss_pred HhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh--cCHHHHHHHh
Q 001978 642 LYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ--VDPELAMAEA 719 (987)
Q Consensus 642 Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~--~di~lA~~~~ 719 (987)
|-+-..|+.++++|+..- .+||...+-.+|.++++++++.-|+.+-.++..|++++++ ++++.|-+||
T Consensus 1029 LtAikad~trVm~YI~rL----------dnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efA 1098 (1666)
T KOG0985|consen 1029 LTAIKADRTRVMEYINRL----------DNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFA 1098 (1666)
T ss_pred HHHhhcChHHHHHHHHHh----------ccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHH
Confidence 555444589999999998 6899999999999999999999999999999999999999 7899999999
Q ss_pred hccCCCHHHHHHHHHHHHHHHhcc
Q 001978 720 DKVEDDEDLRKKLWLMVAKHVIEQ 743 (987)
Q Consensus 720 ~~~~~d~~~~kkLWl~ll~~~i~~ 743 (987)
++.+.+ + +|..+++.-+..
T Consensus 1099 e~~n~p-~----vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1099 ERCNEP-A----VWSQLAKAQLQG 1117 (1666)
T ss_pred HhhCCh-H----HHHHHHHHHHhc
Confidence 887643 3 999999988875
No 11
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=2.3e-05 Score=91.70 Aligned_cols=253 Identities=19% Similarity=0.175 Sum_probs=164.8
Q ss_pred HHHHchhhHHHHHHhcCC--chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCChHHHHHHhcCcChHHHHHHHHHHH
Q 001978 369 KVYLDMKEYAAALANCRD--PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRK 446 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~--~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~~~E~v~lkFl~~~~~~~L~~YL~~k 446 (987)
|+|-..|++++|+++|+. ..++...+.+||.+|-..+|...|.++|.++. .+--+|.+++.+ ...++..|+.++
T Consensus 834 KlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~--~hafev~rmL~e--~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 834 KLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG--VHAFEVFRMLKE--YPKQIEQYVRRK 909 (1416)
T ss_pred HHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC--ChHHHHHHHHHh--ChHHHHHHHHhc
Confidence 444555788888888764 55778889999999999999999999999997 444467776543 345666676653
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHcCChhH
Q 001978 447 LDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEE 526 (987)
Q Consensus 447 l~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~ 526 (987)
-+ + +++++|- +.|++.|..+.
T Consensus 910 ~d------~---~L~~WWg--------------------------------------------------qYlES~Gemda 930 (1416)
T KOG3617|consen 910 RD------E---SLYSWWG--------------------------------------------------QYLESVGEMDA 930 (1416)
T ss_pred cc------h---HHHHHHH--------------------------------------------------HHHhcccchHH
Confidence 22 1 4666661 36788999999
Q ss_pred HHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHH-hHChHHHHHHHHcCCCCCCCcchhhhhhcC
Q 001978 527 LVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLI-MLDAYETVESWMTTNNLNPRKLIPAMMRYS 605 (987)
Q Consensus 527 ~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~~~~li~k~~~~Ll-~~~p~~ti~~l~~~~~ld~~~lip~L~~~~ 605 (987)
++.|+...+||-.++...+-.|+.++|-++-....| ...-|..+..-- .-+-.++|.+|.+. .+|.+
T Consensus 931 Al~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd-~AAcYhlaR~YEn~g~v~~Av~FfTrA---------qafsn-- 998 (1416)
T KOG3617|consen 931 ALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGD-KAACYHLARMYENDGDVVKAVKFFTRA---------QAFSN-- 998 (1416)
T ss_pred HHHHHHHhhhhhhheeeEeeccCchHHHHHHHhccc-HHHHHHHHHHhhhhHHHHHHHHHHHHH---------HHHHH--
Confidence 999999999999999999999999999999888777 355554433221 01112344444331 11111
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcC
Q 001978 606 SEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEK 685 (987)
Q Consensus 606 ~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~ 685 (987)
+ |.|.-+.+-.++|...--.+ ..-|.-.|-|..++.+
T Consensus 999 -----------A----------------------IRlcKEnd~~d~L~nlal~s----------~~~d~v~aArYyEe~g 1035 (1416)
T KOG3617|consen 999 -----------A----------------------IRLCKENDMKDRLANLALMS----------GGSDLVSAARYYEELG 1035 (1416)
T ss_pred -----------H----------------------HHHHHhcCHHHHHHHHHhhc----------CchhHHHHHHHHHHcc
Confidence 2 22222222123343332222 1246677778887776
Q ss_pred -cceeeehhhhccccHHHHHHHHHh-cCHHHHHHHhhc--cCCCHHHHHHHHHHHHHHHhcc
Q 001978 686 -RMRACVHIYGMMSMHEEAVALALQ-VDPELAMAEADK--VEDDEDLRKKLWLMVAKHVIEQ 743 (987)
Q Consensus 686 -~~~~~v~L~~~~g~~~eAl~l~l~-~di~lA~~~~~~--~~~d~~~~kkLWl~ll~~~i~~ 743 (987)
...-+|.||-|.|+...||++|.. ...+.-.-++.. +..|++ |-..-++.+.+.
T Consensus 1036 ~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~----ll~RcadFF~~~ 1093 (1416)
T KOG3617|consen 1036 GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPK----LLRRCADFFENN 1093 (1416)
T ss_pred hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHH----HHHHHHHHHHhH
Confidence 778889999999999999999998 433322223322 234554 555666666554
No 12
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.0015 Score=78.64 Aligned_cols=367 Identities=14% Similarity=0.130 Sum_probs=219.9
Q ss_pred HHHHHchhhHHHHHHhcCC-----ch---------------------hHhHHHHHHHHHHHhcCCHHHHHHHHHhhcCCC
Q 001978 368 WKVYLDMKEYAAALANCRD-----PL---------------------QRDQVYLVQAEAAFATKDFHRAASFYAKINYIL 421 (987)
Q Consensus 368 W~~ll~~~~fe~Al~~~~~-----~~---------------------~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~ 421 (987)
-.+-.+.+.||+|..+-+. .+ ....|..+-|...+++|...+|++-|.+..+..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps 1134 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPS 1134 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcH
Confidence 3556777778888777542 00 124677788889999999999999999998777
Q ss_pred ChHHHHHHhcCcChHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHH
Q 001978 422 SFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAF 501 (987)
Q Consensus 422 ~~E~v~lkFl~~~~~~~L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~f 501 (987)
.+.+|+..--+.+..+.|..||.---...+.. ..-..++.. | .+.+++ .++..|
T Consensus 1135 ~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~-~id~eLi~A-----y-Akt~rl-------------------~elE~f 1188 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARKKVREP-YIDSELIFA-----Y-AKTNRL-------------------TELEEF 1188 (1666)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc-cchHHHHHH-----H-HHhchH-------------------HHHHHH
Confidence 89999999888999999999998533333221 111122211 1 133333 456667
Q ss_pred HhhccccCCHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHHhHChHH
Q 001978 502 LSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYE 581 (987)
Q Consensus 502 l~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~~~~li~k~~~~Ll~~~p~~ 581 (987)
+.-.. .-+...|=+-|-..|..+.+--+..-..+|..+..-....|+|..|.+.-++-+. ...+.+-...-++...-+
T Consensus 1189 i~gpN-~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns-~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1189 IAGPN-VANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANS-TKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred hcCCC-chhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHhchhhhh
Confidence 66432 1123333333444455555544445567788888888899999999998887654 344443322222211111
Q ss_pred HHHHHHcCCCCCC---CcchhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCC--CChhHHHHHHHHhhcCCChHHHHHHH
Q 001978 582 TVESWMTTNNLNP---RKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHN--EDPGVHNLLLSLYAKQEDDSALLRFL 656 (987)
Q Consensus 582 ti~~l~~~~~ld~---~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~--~~~~ihn~ll~Ly~~~~~~~kLl~fL 656 (987)
..++. .++. ..=++.|.+|.+... .-++.+..||.-+ +. .-..+...|.-||+++. ++|+++.|
T Consensus 1267 lAQiC----GL~iivhadeLeeli~~Yq~rG---yFeElIsl~Ea~L---GLERAHMgmfTELaiLYskyk-p~km~EHl 1335 (1666)
T KOG0985|consen 1267 LAQIC----GLNIIVHADELEELIEYYQDRG---YFEELISLLEAGL---GLERAHMGMFTELAILYSKYK-PEKMMEHL 1335 (1666)
T ss_pred HHHhc----CceEEEehHhHHHHHHHHHhcC---cHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence 11111 1211 111344555433211 1122333333221 11 12356677778999998 58888888
Q ss_pred HHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHhcC-----HHHHHHHhhccCCCHHHHHH
Q 001978 657 QCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVD-----PELAMAEADKVEDDEDLRKK 731 (987)
Q Consensus 657 ~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~~d-----i~lA~~~~~~~~~d~~~~kk 731 (987)
+-.- ...+..+++|-|.+..++.+.|+||.+-..|+.|.-.++++- ...-+++..+.. +-+
T Consensus 1336 ~LFw---------sRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FKdii~kVa-NvE---- 1401 (1666)
T KOG0985|consen 1336 KLFW---------SRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFKDIITKVA-NVE---- 1401 (1666)
T ss_pred HHHH---------HhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHHHHHHHHh-hHH----
Confidence 8652 357899999999999999999999999999999998888742 222233333332 233
Q ss_pred HHHHHHHHHhccccCCChhhHHHHHHHHHhcCCCcCcccccCCCCCCcchHHHHHHHHHHHHH
Q 001978 732 LWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLDD 794 (987)
Q Consensus 732 LWl~ll~~~i~~~~~~~~~~i~~~l~~L~~~~~~l~i~dlL~~~p~~~~I~~~Kd~L~~~L~~ 794 (987)
|+-+.++.+++... ..+...+..| .|.|....++.+|...-.++-+|.++..+...
T Consensus 1402 lyYkAi~FYl~~~P----~llnDlL~vL---~pRlDh~r~v~~f~K~~~lpLikpyl~~vq~~ 1457 (1666)
T KOG0985|consen 1402 LYYKAIQFYLDFHP----LLLNDLLTVL---SPRLDHTRTVSIFSKAGQLPLIKPYLRAVQSL 1457 (1666)
T ss_pred HHHHHHHHHHHhCh----HHHHHHHHhc---ccccCchHHHHHHHhcCCCcccHHHHHHHHhc
Confidence 77777777776421 2333333333 45666666665565555555566666554433
No 13
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.00016 Score=85.76 Aligned_cols=169 Identities=19% Similarity=0.251 Sum_probs=120.2
Q ss_pred HHHHHHhcccHHHHHHHHhCCCCc----hhhHHhhHHHHHh-HChHHHHHHHHcC-CCCCCCcchhhhhhcCCCCCCCCC
Q 001978 540 VVHHYIQQGEAKKALQMLRKPAVP----IDLQYKFAPDLIM-LDAYETVESWMTT-NNLNPRKLIPAMMRYSSEPHAKNE 613 (987)
Q Consensus 540 ll~~yi~~~~~~~AL~~l~~~~~~----~~li~k~~~~Ll~-~~p~~ti~~l~~~-~~ld~~~lip~L~~~~~~~~~~~~ 613 (987)
.++..++...|.-|+.+-+++... .++..+|+..|.. -+-+++++-.++. +.++|..++.-++.- ..
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLda-------q~ 412 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDA-------QR 412 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCH-------HH
Confidence 444455556666666666655432 2345567777764 3555666666554 466777666544321 12
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehh
Q 001978 614 THEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHI 693 (987)
Q Consensus 614 ~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L 693 (987)
-..+..|||.|... +.....--.+|+..|++..|-++|..|++... ..+-.+|++.|+++|++.++.+.+-+|
T Consensus 413 IknLt~YLe~L~~~-gla~~dhttlLLncYiKlkd~~kL~efI~~~~------~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 413 IKNLTSYLEALHKK-GLANSDHTTLLLNCYIKLKDVEKLTEFISKCD------KGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHc-ccccchhHHHHHHHHHHhcchHHHHHHHhcCC------CcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 34588999999765 33344455567789999877899999999861 112478999999999999999999999
Q ss_pred hhccccHHHHHHHHHh--cCHHHHHHHhhcc
Q 001978 694 YGMMSMHEEAVALALQ--VDPELAMAEADKV 722 (987)
Q Consensus 694 ~~~~g~~~eAl~l~l~--~di~lA~~~~~~~ 722 (987)
=.+-++|+-++++.++ ++++.|..|....
T Consensus 486 A~k~~~he~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKKHEWVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhccCHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 9999999999999998 8899999987543
No 14
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.84 E-value=0.0028 Score=73.88 Aligned_cols=137 Identities=15% Similarity=0.177 Sum_probs=67.6
Q ss_pred CCEEEEEecCCeEEEE-eCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCC
Q 001978 31 NDVIVLGTSKGWLIRH-DFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLK 109 (987)
Q Consensus 31 nn~l~~~~~~g~l~ri-dl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klk 109 (987)
+|-.++-..+++|..+ ++....+..+++| ..+.+||- |.-++++++ ++-.+|=-. ..+.+.+..
T Consensus 79 ~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~------~~~~~If~---G~LL~~~~~---~~i~~yDw~---~~~~i~~i~ 143 (443)
T PF04053_consen 79 RNRYAVLESSSTIKIYKNFKNEVVKSIKLP------FSVEKIFG---GNLLGVKSS---DFICFYDWE---TGKLIRRID 143 (443)
T ss_dssp SSEEEEE-TTS-EEEEETTEE-TT-----S------S-EEEEE----SSSEEEEET---TEEEEE-TT---T--EEEEES
T ss_pred CccEEEEECCCeEEEEEcCccccceEEcCC------cccceEEc---CcEEEEECC---CCEEEEEhh---HcceeeEEe
Confidence 4555555555565553 5544445566665 35788888 887777766 435555322 224444443
Q ss_pred CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC-------ccccceeeeeeeeCCCCCceeeEEEEeeccCCCc
Q 001978 110 GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK-------DKREKYIKLLFELNELPEAFMGLQMETASLSNGT 182 (987)
Q Consensus 110 g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~-------~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~ 182 (987)
--.|+.|.|+++. .-+.+.|++. +|....+.. ++.|..+..+.++. ..|.+..|. +
T Consensus 144 v~~vk~V~Ws~~g------~~val~t~~~-i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~-----~-- 206 (443)
T PF04053_consen 144 VSAVKYVIWSDDG------ELVALVTKDS-IYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWV-----E-- 206 (443)
T ss_dssp S-E-EEEEE-TTS------SEEEEE-S-S-EEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEE-----T--
T ss_pred cCCCcEEEEECCC------CEEEEEeCCe-EEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEE-----c--
Confidence 3358999999431 1455556554 665544321 34555677777766 458877876 2
Q ss_pred eEEEEEECCCeEEEEecC
Q 001978 183 RYYVMAVTPTRLYSFTGF 200 (987)
Q Consensus 183 ~~~i~ast~~rly~f~g~ 200 (987)
.++|+ ||..||..+.|+
T Consensus 207 d~fiY-tT~~~lkYl~~G 223 (443)
T PF04053_consen 207 DCFIY-TTSNHLKYLVNG 223 (443)
T ss_dssp TEEEE-E-TTEEEEEETT
T ss_pred CEEEE-EcCCeEEEEEcC
Confidence 36666 666688878764
No 15
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.80 E-value=0.031 Score=59.67 Aligned_cols=151 Identities=12% Similarity=0.119 Sum_probs=99.3
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
++.|+|++.+. +.++.|..+|.+..+|+ .......+..+ ...+..+-..|.|.++++++. +|..+.++.
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~---~~~i~i~~~ 80 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH-----TGPVRDVAASADGTYLASGSS---DKTIRLWDL 80 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-----CcceeEEEECCCCCEEEEEcC---CCeEEEEEc
Confidence 45799999988 78899999999999999 43333333333 356778888899988888887 788877776
Q ss_pred CCC-CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcC-CCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 98 KWS-KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 98 ~~~-k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
... ..+.+. .....|.+++|++. +.+++++. +|.|+...+... +.+..+...+++|+++.|..
T Consensus 81 ~~~~~~~~~~-~~~~~i~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 81 ETGECVRTLT-GHTSYVSSVAFSPD-------GRILSSSSRDKTIKVWDVETG-------KCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred CcccceEEEe-ccCCcEEEEEEcCC-------CCEEEEecCCCeEEEEECCCc-------EEEEEeccCCCcEEEEEEcC
Confidence 553 233332 12336999999943 24666655 899998877532 22222332235699999863
Q ss_pred eccCCCceEEEEEECCCeEEEEec
Q 001978 176 ASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~g 199 (987)
..++++..+....++.|.-
T Consensus 146 -----~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 146 -----DGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred -----cCCEEEEEcCCCcEEEEEc
Confidence 2245554443777776653
No 16
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=97.59 E-value=0.002 Score=63.15 Aligned_cols=129 Identities=19% Similarity=0.148 Sum_probs=100.1
Q ss_pred CCChHHHHHHhcCcChHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHH
Q 001978 420 ILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFR 499 (987)
Q Consensus 420 ~~~~E~v~lkFl~~~~~~~L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~ 499 (987)
..+.+.|+..|.+.+....|..||......-..+ ..+.+-++++|... . ..++-
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~-----~~~~~~li~ly~~~-~--------------------~~~ll 60 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNSEN-----PALQTKLIELYAKY-D--------------------PQKEI 60 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCccc-----hhHHHHHHHHHHHH-C--------------------HHHHH
Confidence 3578999999999899999999999766542221 23455667777521 1 23455
Q ss_pred HHHhhccccCCHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHHHHHhc-ccHHHHHHHHhCCCCchhhHHhhHHHHH
Q 001978 500 AFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQ-GEAKKALQMLRKPAVPIDLQYKFAPDLI 575 (987)
Q Consensus 500 ~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~-~~~~~AL~~l~~~~~~~~li~k~~~~Ll 575 (987)
.||.......|.+.+..+++.++..+++++++.+.++|...+..++.+ ++++.|+++..+..+ .+++.+-+...+
T Consensus 61 ~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~-~~lw~~~~~~~l 136 (140)
T smart00299 61 ERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNN-PELWAEVLKALL 136 (140)
T ss_pred HHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 667644457899999999999999999999999999999999999988 999999999999776 477766555444
No 17
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.57 E-value=0.0038 Score=66.74 Aligned_cols=150 Identities=9% Similarity=0.064 Sum_probs=98.5
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.|++++.++ ++++.+..+|.|..+|+ .+.....+..+ ...|..+-.+|.|.++++++. +|....++.
T Consensus 135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~ 206 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-----TGEVNSVAFSPDGEKLLSSSS---DGTIKLWDL 206 (289)
T ss_pred CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC-----ccccceEEECCCcCEEEEecC---CCcEEEEEC
Confidence 34689999988 45555555999999999 45555555533 357899999999999999887 788877776
Q ss_pred CCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcC-CCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEee
Q 001978 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (987)
Q Consensus 98 ~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~ 176 (987)
...+....-+.....|.+++|++. +.++++.. +|.|+...+... +.+..+...+.+|.++.|..
T Consensus 207 ~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~i~i~~~~~~-------~~~~~~~~~~~~i~~~~~~~- 271 (289)
T cd00200 207 STGKCLGTLRGHENGVNSVAFSPD-------GYLLASGSEDGTIRVWDLRTG-------ECVQTLSGHTNSVTSLAWSP- 271 (289)
T ss_pred CCCceecchhhcCCceEEEEEcCC-------CcEEEEEcCCCcEEEEEcCCc-------eeEEEccccCCcEEEEEECC-
Confidence 543322211112347999999942 34666555 899998877542 11222222235699999863
Q ss_pred ccCCCceEEEEEECCCeEEEE
Q 001978 177 SLSNGTRYYVMAVTPTRLYSF 197 (987)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f 197 (987)
+.+.++.++....+..|
T Consensus 272 ----~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 272 ----DGKRLASGSADGTIRIW 288 (289)
T ss_pred ----CCCEEEEecCCCeEEec
Confidence 22466666666666655
No 18
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.46 E-value=0.026 Score=61.95 Aligned_cols=244 Identities=14% Similarity=0.195 Sum_probs=128.2
Q ss_pred EEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC---
Q 001978 26 CMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK--- 101 (987)
Q Consensus 26 ~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k--- 101 (987)
|.+..++.|++||..| ||..++ ++....++.- ..+|.++-+-|.-.-+++-++ |..++.+...-.
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~------~~~I~ql~vl~~~~~llvLsd----~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK------LSSITQLSVLPELNLLLVLSD----GQLYVYDLDSLEPVS 70 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccceeEee------cceEEEEEEecccCEEEEEcC----CccEEEEchhhcccc
Confidence 6788999999999999 899998 5555433321 134999999888776666664 777766532211
Q ss_pred -------------ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCcccc-ceeeeeeeeCCCCCc
Q 001978 102 -------------PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKRE-KYIKLLFELNELPEA 167 (987)
Q Consensus 102 -------------~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e-~~~k~v~~l~~~~~~ 167 (987)
...+.+.|| +..++-. . .......++++.++ .|..+.+..+.... +..|. +.++ ++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~--v~~f~~~--~-~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke-~~lp---~~ 140 (275)
T PF00780_consen 71 TSAPLAFPKSRSLPTKLPETKG--VSFFAVN--G-GHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKE-ISLP---DP 140 (275)
T ss_pred ccccccccccccccccccccCC--eeEEeec--c-ccccceEEEEEECC-EEEEEEEECCcccccceeEE-EEcC---CC
Confidence 113444555 3344411 1 11122344444554 56666665532233 45566 4676 56
Q ss_pred eeeEEEEeeccCCCceEEEEEECCCeEEEEecCC--chHHHHhhhhcccccccccCCCcCCCcceeeeccCCCceEEEee
Q 001978 168 FMGLQMETASLSNGTRYYVMAVTPTRLYSFTGFG--SLDTVFASYLDRAVHFMELPGEILNSELHFFIKQRRAVHFAWLS 245 (987)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g~~--~l~~lf~~~~~~~~~~~elp~~~~~s~l~~~~~~~~~~~faW~t 245 (987)
+.++.|.. +.+++++ ....+ ...-. ....++..-.. ...+ ........++..+.-.+ ..-+.-.+
T Consensus 141 ~~~i~~~~-------~~i~v~~-~~~f~-~idl~~~~~~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~-~e~Ll~~~ 207 (275)
T PF00780_consen 141 PSSIAFLG-------NKICVGT-SKGFY-LIDLNTGSPSELLDPSDS-SSSF--KSRNSSSKPLGIFQLSD-NEFLLCYD 207 (275)
T ss_pred cEEEEEeC-------CEEEEEe-CCceE-EEecCCCCceEEeCccCC-cchh--hhcccCCCceEEEEeCC-ceEEEEec
Confidence 88999862 4555543 33333 33211 11111110000 0000 00000000111111101 12222334
Q ss_pred cCceEEEEeecCCCCCCCCCCCccccccccccccccCCCCCCCCCcccccCCceEEEEECCEEEEEecCCCceEEEEEe
Q 001978 246 GAGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSEYHFLLLMGNKVKVVNRISEQIIEELQF 324 (987)
Q Consensus 246 ~~gi~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~p~si~lT~~h~llL~~~~l~vvn~l~~~~v~~~~l 324 (987)
+.|+|+..-.. . .. ...+.. ...|.+++....|++++.++.|.|.+..+++.++....
T Consensus 208 ~~g~fv~~~G~----------~--~r-~~~i~W--------~~~p~~~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 208 NIGVFVNKNGE----------P--SR-KSTIQW--------SSAPQSVAYSSPYLIAFSSNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred ceEEEEcCCCC----------c--Cc-ccEEEc--------CCchhEEEEECCEEEEECCCEEEEEECcCCcEEEEEEC
Confidence 55555532111 0 00 011111 12589999999999999999999999999999998776
No 19
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.42 E-value=0.012 Score=68.22 Aligned_cols=66 Identities=12% Similarity=-0.009 Sum_probs=49.8
Q ss_pred hhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCCc-hhhHHhhHHHHHhHCh-HHHHHHHHcC
Q 001978 524 VEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVP-IDLQYKFAPDLIMLDA-YETVESWMTT 589 (987)
Q Consensus 524 ~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~~-~~li~k~~~~Ll~~~p-~~ti~~l~~~ 589 (987)
+-.+.+.-.+++|-..++++++.-++|.+|+.+-.+++.. .+..+.|+.||-+.+. +++-+.+.+.
T Consensus 763 ~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 763 PGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cchHHHHHHHhccHHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3445555667889999999999999999999999988753 3567899999987665 3344445443
No 20
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.19 E-value=0.0075 Score=70.31 Aligned_cols=162 Identities=15% Similarity=0.213 Sum_probs=110.9
Q ss_pred eeEEEEeCCEEEEEe-cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC
Q 001978 24 ITCMSAGNDVIVLGT-SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK 101 (987)
Q Consensus 24 i~~~~v~nn~l~~~~-~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (987)
...+.+.+|.+++.- ..+.+...++ .|+..+-.++-.. .....|.+++..|.|.++.+.+. .|..|-++....+
T Consensus 433 ~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~~~~I~~l~~SsdG~yiaa~~t---~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 433 AISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AKCPSISRLVVSSDGNYIAAIST---RGQIFVYNLETLE 508 (691)
T ss_pred eeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cCCCcceeEEEcCCCCEEEEEec---cceEEEEEcccce
Confidence 356677778777766 6788888898 7776543333221 23478999999999999988887 7999998887777
Q ss_pred ceecc-CCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeee-eeeeCC----CCCceeeEEEEe
Q 001978 102 PRVLS-KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKL-LFELNE----LPEAFMGLQMET 175 (987)
Q Consensus 102 ~k~L~-klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~-v~~l~~----~~~~I~gi~~~~ 175 (987)
-+.|. ++ +..||++++.++. ...+++.|+++++||+.++.++-. +..+. -+.+|. .++++.||.+..
T Consensus 509 ~~~l~~rl-n~~vTa~~~~~~~-----~~~lvvats~nQv~efdi~~~~l~-~ws~~nt~nlpk~~~~l~~~~~gisfd~ 581 (691)
T KOG2048|consen 509 SHLLKVRL-NIDVTAAAFSPFV-----RNRLVVATSNNQVFEFDIEARNLT-RWSKNNTRNLPKEPKTLIPGIPGISFDP 581 (691)
T ss_pred eecchhcc-Ccceeeeeccccc-----cCcEEEEecCCeEEEEecchhhhh-hhhhccccccccChhhcCCCCceEEeCC
Confidence 77766 44 4799999999653 458999999999999999655210 11111 123332 246799999972
Q ss_pred eccCCCceEEEEEECCCeEEEEec
Q 001978 176 ASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~g 199 (987)
++..+++++-++-..+..|.+
T Consensus 582 ---~n~s~~~~~~a~w~~~id~~~ 602 (691)
T KOG2048|consen 582 ---KNSSRFIVYDAHWSCLIDFSL 602 (691)
T ss_pred ---CCccEEEEEcCcEEEEEecCC
Confidence 355566666444444444443
No 21
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.03 E-value=0.013 Score=64.95 Aligned_cols=132 Identities=13% Similarity=0.073 Sum_probs=96.8
Q ss_pred CceeEEEEeCCEEEEEe--cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 22 GVITCMSAGNDVIVLGT--SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~--~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
..++|.+++.+=+.+|+ .+|.|-.||+ .++++.+|+-+ .++|.-|-+..+|.+|.+.++ +|.++.+..+
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh-----t~~vk~i~FsENGY~Lat~ad---d~~V~lwDLR 419 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH-----TGPVKAISFSENGYWLATAAD---DGSVKLWDLR 419 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC-----CCceeEEEeccCceEEEEEec---CCeEEEEEeh
Confidence 34899999998776655 6799999999 88888888776 579999999999999999999 9988888753
Q ss_pred CCC-c--eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 99 WSK-P--RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 99 ~~k-~--k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
-.+ + -.+.. +..+.++.|+.. ..-+.+|.++-.||.+. +.-+.|..+-++++..+..+|+.|.
T Consensus 420 Kl~n~kt~~l~~--~~~v~s~~fD~S------Gt~L~~~g~~l~Vy~~~-----k~~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 420 KLKNFKTIQLDE--KKEVNSLSFDQS------GTYLGIAGSDLQVYICK-----KKTKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred hhcccceeeccc--cccceeEEEcCC------CCeEEeecceeEEEEEe-----cccccceeeehhhhcccccceeeec
Confidence 322 2 23332 347999999932 22456677777777763 2235677766666544678999884
No 22
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.94 E-value=0.00044 Score=53.14 Aligned_cols=35 Identities=26% Similarity=0.780 Sum_probs=29.0
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
+.|.+|...+... . .++.++|||.||.+|+.+.+.
T Consensus 1 d~C~IC~~~~~~~----~------------~~~~l~C~H~fh~~Ci~~~~~ 35 (44)
T PF13639_consen 1 DECPICLEEFEDG----E------------KVVKLPCGHVFHRSCIKEWLK 35 (44)
T ss_dssp -CETTTTCBHHTT----S------------CEEEETTSEEEEHHHHHHHHH
T ss_pred CCCcCCChhhcCC----C------------eEEEccCCCeeCHHHHHHHHH
Confidence 3699999998751 3 789999999999999998763
No 23
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.90 E-value=0.56 Score=54.97 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=40.1
Q ss_pred ceeeEeeccCCCeEEEEeCC-cEEEEEcccchhhHHHHHHchhhHHHHHHhcCC----chhHhHHHHHHHHHHHhcCCHH
Q 001978 334 GIIGLCSDATAGVFYAYDQN-SIFQVSVNDEGRDMWKVYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFH 408 (987)
Q Consensus 334 ~~~gl~~D~~~~~~~i~S~~-~i~~~~~~~e~~~~W~~ll~~~~fe~Al~~~~~----~~~~~~V~~~~~~~l~~~g~y~ 408 (987)
.++|... ..+.+|++-.+ +|+.+.+ +-.-...+..+-+++|++|+++.+. |.--..-+.+-+.+|.++|-++
T Consensus 236 yllgy~~--~~~~ly~~Dr~~~v~~~~l-d~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e 312 (443)
T PF04053_consen 236 YLLGYLP--KENRLYLIDRDGNVISYEL-DLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPE 312 (443)
T ss_dssp EEEEEET--TTTEEEEE-TT--EEEEE---HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HH
T ss_pred EEEEEEc--cCCEEEEEECCCCEEEEEE-CHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHH
Confidence 4555542 35788887665 4555544 3345667778899999998777542 1111233666677777777666
Q ss_pred HHHHH
Q 001978 409 RAASF 413 (987)
Q Consensus 409 ~Aa~~ 413 (987)
.|.+.
T Consensus 313 ~AL~~ 317 (443)
T PF04053_consen 313 LALQF 317 (443)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 66655
No 24
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.56 Score=58.18 Aligned_cols=117 Identities=15% Similarity=0.174 Sum_probs=80.2
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK 101 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (987)
..+++.|+.+-.+++|++.|.+...|...+ .. +++..-...++|+.+-....|..++.... +|.++.+.-+..|
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~n-L~--~~~~ne~v~~~Vtsvafn~dg~~l~~G~~---~G~V~v~D~~~~k 163 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGN-LG--PLHQNERVQGPVTSVAFNQDGSLLLAGLG---DGHVTVWDMHRAK 163 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhhhcc-cc--hhhcCCccCCcceeeEecCCCceeccccC---CCcEEEEEccCCc
Confidence 457888888999999999999999998322 11 12222223478899999999998888776 8999999887766
Q ss_pred ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 102 PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 102 ~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
+-.+--..|.+.++|-.... ++..| ..|.|...|.+|...+..
T Consensus 164 ~l~~i~e~~ap~t~vi~v~~-t~~nS--~llt~D~~Gsf~~lv~nk 206 (1206)
T KOG2079|consen 164 ILKVITEHGAPVTGVIFVGR-TSQNS--KLLTSDTGGSFWKLVFNK 206 (1206)
T ss_pred ceeeeeecCCccceEEEEEE-eCCCc--EEEEccCCCceEEEEech
Confidence 43333345666555444311 12222 477777789999988865
No 25
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.36 Score=56.35 Aligned_cols=142 Identities=15% Similarity=0.197 Sum_probs=93.7
Q ss_pred eCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC-ceeccC
Q 001978 30 GNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK-PRVLSK 107 (987)
Q Consensus 30 ~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k-~k~L~k 107 (987)
+.|++++|+.. .||+|+- ...-..-.++. ...|+-+--+|.|.||.|-+. +|.+.-++....| .+.+.-
T Consensus 187 s~n~laValg~-~vylW~~~s~~v~~l~~~~-----~~~vtSv~ws~~G~~LavG~~---~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 187 SANVLAVALGQ-SVYLWSASSGSVTELCSFG-----EELVTSVKWSPDGSHLAVGTS---DGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred cCCeEEEEecc-eEEEEecCCCceEEeEecC-----CCceEEEEECCCCCEEEEeec---CCeEEEEehhhccccccccC
Confidence 45688889887 8999988 43322223343 467899999999999999998 8999888765543 333332
Q ss_pred CCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEE
Q 001978 108 LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVM 187 (987)
Q Consensus 108 lkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ 187 (987)
.+.-.|-|++|+. ..+..|+.+|.|....+-..+. .+. .++... ..|+|++|.. +.+++.-
T Consensus 258 ~h~~rvg~laW~~--------~~lssGsr~~~I~~~dvR~~~~---~~~-~~~~H~--qeVCgLkws~-----d~~~lAS 318 (484)
T KOG0305|consen 258 SHASRVGSLAWNS--------SVLSSGSRDGKILNHDVRISQH---VVS-TLQGHR--QEVCGLKWSP-----DGNQLAS 318 (484)
T ss_pred CcCceeEEEeccC--------ceEEEecCCCcEEEEEEecchh---hhh-hhhccc--ceeeeeEECC-----CCCeecc
Confidence 1345899999992 2688999999999988754321 122 233343 4599999963 1123332
Q ss_pred EECCCeEEEEec
Q 001978 188 AVTPTRLYSFTG 199 (987)
Q Consensus 188 ast~~rly~f~g 199 (987)
--.+.+++-|.+
T Consensus 319 GgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 319 GGNDNVVFIWDG 330 (484)
T ss_pred CCCccceEeccC
Confidence 223556666655
No 26
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.54 E-value=1.1 Score=57.22 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=24.7
Q ss_pred HHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 001978 371 YLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKI 417 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~ 417 (987)
++..|++++|+++++.- .....+....|..++..|+|++|.+.|.+.
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 491 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKA 491 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 45555566665554321 112234455566666666666666666554
No 27
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.15 Score=54.94 Aligned_cols=151 Identities=13% Similarity=0.165 Sum_probs=94.6
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeC---CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 23 VITCMSAGNDVIVLGTSKGWLIRHDF---GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~g~l~ridl---~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
.|.++.-.+-+.++|..++.|-.+|+ +......+.++. ......++|-..|.|..++++|+ .+..|-+..-.
T Consensus 144 pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT~---~s~~~~lDAf~ 218 (311)
T KOG1446|consen 144 PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD--NDEAEWTDLEFSPDGKSILLSTN---ASFIYLLDAFD 218 (311)
T ss_pred cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--CCccceeeeEEcCCCCEEEEEeC---CCcEEEEEccC
Confidence 46777778878888888888888898 233344555553 22478999999999999999998 55555444311
Q ss_pred CC----ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCC-CCCceeeEEEE
Q 001978 100 SK----PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE-LPEAFMGLQME 174 (987)
Q Consensus 100 ~k----~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~-~~~~I~gi~~~ 174 (987)
-. +-..+.-.+.. -+.++.|+ +.-||.|..+|.|+...++.+ +.|..+.+ ..+|++.++|.
T Consensus 219 G~~~~tfs~~~~~~~~~-~~a~ftPd------s~Fvl~gs~dg~i~vw~~~tg-------~~v~~~~~~~~~~~~~~~fn 284 (311)
T KOG1446|consen 219 GTVKSTFSGYPNAGNLP-LSATFTPD------SKFVLSGSDDGTIHVWNLETG-------KKVAVLRGPNGGPVSCVRFN 284 (311)
T ss_pred CcEeeeEeeccCCCCcc-eeEEECCC------CcEEEEecCCCcEEEEEcCCC-------cEeeEecCCCCCCccccccC
Confidence 10 00000001122 23345422 224555556799999998654 22223322 23678888875
Q ss_pred eeccCCCceEEEEEECCCeEEEEec
Q 001978 175 TASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
. ++..+||+.++|-.|..
T Consensus 285 P-------~~~mf~sa~s~l~fw~p 302 (311)
T KOG1446|consen 285 P-------RYAMFVSASSNLVFWLP 302 (311)
T ss_pred C-------ceeeeeecCceEEEEec
Confidence 2 79999999999987854
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=96.48 E-value=0.14 Score=53.43 Aligned_cols=154 Identities=6% Similarity=0.070 Sum_probs=104.5
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC-
Q 001978 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK- 101 (987)
Q Consensus 24 i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k- 101 (987)
...+...+++||-|-.+|++-.||+ .|.--..++.+ ++|+.|-+.|+-.+||++.+ +|...-+....+.
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~------spVn~vvlhpnQteLis~dq---sg~irvWDl~~~~c 158 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN------SPVNTVVLHPNQTELISGDQ---SGNIRVWDLGENSC 158 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhccCC------CCcceEEecCCcceEEeecC---CCcEEEEEccCCcc
Confidence 4556677889999999999999999 65544455554 67999999999999999999 8988887765542
Q ss_pred ceeccCCCCceEEEEeecCCCCCCCCcceEEEE-cCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCC
Q 001978 102 PRVLSKLKGLVVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (987)
Q Consensus 102 ~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (987)
.+.|.---+..|+|++-.+ .|..|+| +++|..|--.+..+.. ..-+..+.+++--.+-|+...+. .
T Consensus 159 ~~~liPe~~~~i~sl~v~~-------dgsml~a~nnkG~cyvW~l~~~~~-~s~l~P~~k~~ah~~~il~C~lS-----P 225 (311)
T KOG0315|consen 159 THELIPEDDTSIQSLTVMP-------DGSMLAAANNKGNCYVWRLLNHQT-ASELEPVHKFQAHNGHILRCLLS-----P 225 (311)
T ss_pred ccccCCCCCcceeeEEEcC-------CCcEEEEecCCccEEEEEccCCCc-cccceEhhheecccceEEEEEEC-----C
Confidence 2333333567898888773 2456666 6779999877765411 11233443443212334444443 3
Q ss_pred CceEEEEEECCCeEEEEec
Q 001978 181 GTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 181 ~~~~~i~ast~~rly~f~g 199 (987)
+.++++-++...-.+-|.-
T Consensus 226 d~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 226 DVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CCcEEEeecCCceEEEEec
Confidence 4578888778888887754
No 29
>PLN03077 Protein ECB2; Provisional
Probab=96.43 E-value=1.7 Score=56.02 Aligned_cols=139 Identities=12% Similarity=0.067 Sum_probs=79.9
Q ss_pred HHHHHcCChhHHHHHHHhH---------hhHHHHHHHHHhcccHHHHHHHHhCCCCchh-hHHhhHHHHH-hHChHHHHH
Q 001978 516 KLLESYGRVEELVFFASLK---------EQHEIVVHHYIQQGEAKKALQMLRKPAVPID-LQYKFAPDLI-MLDAYETVE 584 (987)
Q Consensus 516 ~ll~~~g~~e~~l~~a~~~---------~dy~~ll~~yi~~~~~~~AL~~l~~~~~~~~-li~k~~~~Ll-~~~p~~ti~ 584 (987)
..+...|..+.+..+.... .-|..++..|...|++++|.+++.+...+.. .+--....+. ...++++++
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHH
Confidence 3333455555554443332 2477899999999999999999988764211 1111112222 246677888
Q ss_pred HHHcC--CCCCCCcc--hhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHH
Q 001978 585 SWMTT--NNLNPRKL--IPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQC 658 (987)
Q Consensus 585 ~l~~~--~~ld~~~l--ip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~ 658 (987)
+|-+- ..+.|+.. ...+..+... ...+.+...++.+....-..+..++|.++.+|++.+.-++....++.
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~----g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACL----GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhcc----chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77532 34545432 2222222211 12445667777776655556778889999999886654455555544
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.39 E-value=1.4 Score=56.11 Aligned_cols=137 Identities=15% Similarity=0.130 Sum_probs=64.1
Q ss_pred HHHHcCChhHHHHHHHhH--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHh-HChHHHH
Q 001978 517 LLESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIM-LDAYETV 583 (987)
Q Consensus 517 ll~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~l~~~----~~~~~li~k~~~~Ll~-~~p~~ti 583 (987)
++...|+.++++.+.+.. .-+..+...|...|++++|++++.+. ++....+...+..+.. .+.++++
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAV 553 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHH
Confidence 444556666665554432 11334455667777777777776542 2223344444444332 3445555
Q ss_pred HHHHcCCCCCCCcchhh--hh-hcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHH
Q 001978 584 ESWMTTNNLNPRKLIPA--MM-RYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQC 658 (987)
Q Consensus 584 ~~l~~~~~ld~~~lip~--L~-~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~ 658 (987)
..+-+....+|...-.. +. .|.. ......++.+++.++...+ .++..+..+...|...++.++.+..++.
T Consensus 554 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 554 AWLEKAAELNPQEIEPALALAQYYLG----KGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55533222233221111 00 0110 0134556777776665433 3455666666666654444444444443
No 31
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.28 E-value=0.17 Score=56.46 Aligned_cols=113 Identities=8% Similarity=0.105 Sum_probs=74.3
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC-C-ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEE
Q 001978 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS-K-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHE 142 (987)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~-k-~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e 142 (987)
+++|+.+.+.|+|.+++.+++ +|..-+...++- . .+.-.+-.++.++|.+|.++. -=|-.||.+|.|=.
T Consensus 303 ~~~V~~ls~h~tgeYllsAs~---d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg------Lifgtgt~d~~vki 373 (506)
T KOG0289|consen 303 EEPVTGLSLHPTGEYLLSASN---DGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG------LIFGTGTPDGVVKI 373 (506)
T ss_pred cccceeeeeccCCcEEEEecC---CceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc------eEEeccCCCceEEE
Confidence 579999999999999999988 665533332222 1 122222246889999999542 13445678898777
Q ss_pred EEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 143 MAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 143 ~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
..+... ..+-.+|+-.+||+.|.|. .+..|++.++....+.-|+
T Consensus 374 wdlks~-------~~~a~Fpght~~vk~i~Fs-----ENGY~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 374 WDLKSQ-------TNVAKFPGHTGPVKAISFS-----ENGYWLATAADDGSVKLWD 417 (506)
T ss_pred EEcCCc-------cccccCCCCCCceeEEEec-----cCceEEEEEecCCeEEEEE
Confidence 766543 2345666656889999995 2335666666666577675
No 32
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=96.21 E-value=0.14 Score=61.28 Aligned_cols=148 Identities=10% Similarity=0.101 Sum_probs=87.5
Q ss_pred CCceeEEEEe---CCEEEEEecCCeEEEEeC-CCCC--ceeeEcCCCCCCccceeEEEe-CCCCCeEEEEeecCCCccEE
Q 001978 21 RGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGD--SYDIDLSAGRPGEQSIHKVFV-DPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 21 ~~~i~~~~v~---nn~l~~~~~~g~l~ridl-~~~~--~~~~~l~~~~~~~~~i~~i~l-Dp~G~hlli~~~~~~~g~~~ 93 (987)
+..++|+..+ .+.|+.|+.+|+|..||+ .+.. ...+........+.-+.-+|+ ++.+.-++.++. ||...
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss---DG~i~ 318 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS---DGSIC 318 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec---CCcEe
Confidence 3457888875 579999999999999999 5554 222211111122344555666 444533666666 89999
Q ss_pred EEecCCCC-----------c-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCc-cccceeeeeee
Q 001978 94 YTHAKWSK-----------P-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKD-KREKYIKLLFE 160 (987)
Q Consensus 94 Y~~~~~~k-----------~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~-~~e~~~k~v~~ 160 (987)
++..+.-. . +....-+-+.+++++|.+.. -..|++||..|.||.+.-.+.. ..+...|-+..
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-----p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~ 393 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-----PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST 393 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccCC-----CceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence 98642211 0 01111133689999998332 2379999999999996654431 22222233211
Q ss_pred eCCCCCceeeEEEEee
Q 001978 161 LNELPEAFMGLQMETA 176 (987)
Q Consensus 161 l~~~~~~I~gi~~~~~ 176 (987)
..-..+||+.|.+..+
T Consensus 394 ~~~h~g~v~~v~~nPF 409 (555)
T KOG1587|consen 394 FITHIGPVYAVSRNPF 409 (555)
T ss_pred ccccCcceEeeecCCC
Confidence 1112477998888655
No 33
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=96.20 E-value=0.1 Score=56.00 Aligned_cols=143 Identities=18% Similarity=0.248 Sum_probs=94.2
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE--EEecC
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF--YTHAK 98 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~--Y~~~~ 98 (987)
++|-|+.|..|.|++|+.+..++.+|| +-+... +.-. ++=...++.|-+-|+|.=-++++. +|-++ |++.+
T Consensus 136 kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~--q~re-S~lkyqtR~v~~~pn~eGy~~sSi---eGRVavE~~d~s 209 (323)
T KOG1036|consen 136 KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF--QRRE-SSLKYQTRCVALVPNGEGYVVSSI---EGRVAVEYFDDS 209 (323)
T ss_pred ceEEEEeccCCEEEEeecCceEEEEEcccccchh--hhcc-ccceeEEEEEEEecCCCceEEEee---cceEEEEccCCc
Confidence 479999999999999999999999999 444322 1111 111367888888897666666666 68776 34433
Q ss_pred ----CC----CceeccCCCC----ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCC
Q 001978 99 ----WS----KPRVLSKLKG----LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPE 166 (987)
Q Consensus 99 ----~~----k~k~L~klkg----~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~ 166 (987)
+. |.+.+.. +| ++|.+++|.|- .+.|..|.++|.|-.-.+..+ |.+.+++.-+.
T Consensus 210 ~~~~skkyaFkCHr~~~-~~~~~~yPVNai~Fhp~------~~tfaTgGsDG~V~~Wd~~~r-------Krl~q~~~~~~ 275 (323)
T KOG1036|consen 210 EEAQSKKYAFKCHRLSE-KDTEIIYPVNAIAFHPI------HGTFATGGSDGIVNIWDLFNR-------KRLKQLAKYET 275 (323)
T ss_pred hHHhhhceeEEeeeccc-CCceEEEEeceeEeccc------cceEEecCCCceEEEccCcch-------hhhhhccCCCC
Confidence 22 3444442 44 79999999943 357999999997766544443 33444554346
Q ss_pred ceeeEEEEeeccCCCceEEEEEE
Q 001978 167 AFMGLQMETASLSNGTRYYVMAV 189 (987)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~as 189 (987)
+|..+.+.. +...+.+|+
T Consensus 276 SI~slsfs~-----dG~~LAia~ 293 (323)
T KOG1036|consen 276 SISSLSFSM-----DGSLLAIAS 293 (323)
T ss_pred ceEEEEecc-----CCCeEEEEe
Confidence 688888763 123556553
No 34
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.17 E-value=1.6 Score=52.11 Aligned_cols=115 Identities=14% Similarity=0.185 Sum_probs=77.5
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE-E-EecCC
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF-Y-THAKW 99 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~-Y-~~~~~ 99 (987)
.+.||++...+.++||.+.|.||.++-+......+.-. .+.+.+.-+.+.+.-..+.+.+. +|-+- | ++...
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~---~~~~~~~~~~vs~~e~lvAagt~---~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE---GATGITCVRSVSSVEYLVAAGTA---SGRVSVFQLNKEL 109 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhccccc---CccceEEEEEecchhHhhhhhcC---CceEEeehhhccC
Confidence 45899999999999999999999998744433222111 12355666667776666666666 55543 2 22211
Q ss_pred C----CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 100 S----KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 100 ~----k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
+ .+.+..|-.++.|+|++|+.+ -..+-.|..+|.|....++.+
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~------~~k~ysGD~~Gkv~~~~L~s~ 156 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKN------GMKLYSGDSQGKVVLTELDSR 156 (726)
T ss_pred CCcceeeccccccCCceEEEEEeccc------ccEEeecCCCceEEEEEechh
Confidence 1 123444334789999999932 347999999999999999873
No 35
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.16 E-value=2.7 Score=54.73 Aligned_cols=270 Identities=12% Similarity=0.048 Sum_probs=122.0
Q ss_pred cchhhHHHHHHchhhHHHHHHhcCCc-----hhH-hHHHHHHHHHHHhcCCHHHHHHHHHhhc--CCCChHHHHHHhcCc
Q 001978 362 DEGRDMWKVYLDMKEYAAALANCRDP-----LQR-DQVYLVQAEAAFATKDFHRAASFYAKIN--YILSFEEITLKFISV 433 (987)
Q Consensus 362 ~e~~~~W~~ll~~~~fe~Al~~~~~~-----~~~-~~V~~~~~~~l~~~g~y~~Aa~~~~~~~--~~~~~E~v~lkFl~~ 433 (987)
.+......-|++.|++++|+++.+.- ..- ..++......+...|.+.+|...|.... +...|..++.-+...
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASS 450 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 34445555677788999999886421 111 1223344455667788888888776553 112333344444455
Q ss_pred ChHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCH-
Q 001978 434 SEQDALRTFLLRKLD-NLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDE- 511 (987)
Q Consensus 434 ~~~~~L~~YL~~kl~-~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~- 511 (987)
++.+.-...+....+ .+..+..+. +-++..|.. ...+ .....-|+...... -.-|.
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~ty-----nsLI~~y~k-~G~v---------------d~A~~vf~eM~~~G-v~Pdvv 508 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLY-----TTLISTCAK-SGKV---------------DAMFEVFHEMVNAG-VEANVH 508 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHH-----HHHHHHHHh-CcCH---------------HHHHHHHHHHHHcC-CCCCHH
Confidence 554433333332221 122222222 222233331 1111 11111122211110 01122
Q ss_pred --HHHHHHHHHcCChhHHHHHHHhHh---------hHHHHHHHHHhcccHHHHHHHHhCCCC-----chhhHHhhHHH--
Q 001978 512 --ATTMKLLESYGRVEELVFFASLKE---------QHEIVVHHYIQQGEAKKALQMLRKPAV-----PIDLQYKFAPD-- 573 (987)
Q Consensus 512 --~tv~~ll~~~g~~e~~l~~a~~~~---------dy~~ll~~yi~~~~~~~AL~~l~~~~~-----~~~li~k~~~~-- 573 (987)
.+++..+...|+.++++.+...+. -|..++..|.+.|++++|++++..... .++ ..-|...
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ 587 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMK 587 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHH
Confidence 234445555677777766665542 367777777777777777777654310 011 1111111
Q ss_pred -HH-hHChHHHHHHHHcC--CCCCCCcc-hhhh-hhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCC
Q 001978 574 -LI-MLDAYETVESWMTT--NNLNPRKL-IPAM-MRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQE 647 (987)
Q Consensus 574 -Ll-~~~p~~ti~~l~~~--~~ld~~~l-ip~L-~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~ 647 (987)
+. ..+.+++.++|-+. ..+.|... ...+ ..|.+. ...+.+...++.+....-..+...++.++..|++.+
T Consensus 588 ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~----G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK----GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 11 13445555555322 23333211 1111 112111 124456666666554433345566777777777655
Q ss_pred ChHHHHHHHHH
Q 001978 648 DDSALLRFLQC 658 (987)
Q Consensus 648 ~~~kLl~fL~~ 658 (987)
+-++.+.+++.
T Consensus 664 ~~eeA~~l~~e 674 (1060)
T PLN03218 664 DLDKAFEILQD 674 (1060)
T ss_pred CHHHHHHHHHH
Confidence 43444444433
No 36
>PLN03077 Protein ECB2; Provisional
Probab=96.14 E-value=1.4 Score=56.88 Aligned_cols=119 Identities=10% Similarity=0.116 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHH-HhHChHHHHHHHHcC--CCCCCCcc--hhhhhhcCCCCCCC
Q 001978 537 HEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDL-IMLDAYETVESWMTT--NNLNPRKL--IPAMMRYSSEPHAK 611 (987)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~l~~~~~~~~li~k~~~~L-l~~~p~~ti~~l~~~--~~ld~~~l--ip~L~~~~~~~~~~ 611 (987)
+..++..|.+.|+.++|++++.+.......+.-.+..+ ..-..++++++|-+- ..+.|+.+ .-.|..|...
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~---- 602 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS---- 602 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc----
Confidence 45688899999999999999877622111111111111 124667788887432 34555543 2222333222
Q ss_pred CChHHHHHHHHHHHhhcCC-CChhHHHHHHHHhhcCCChHHHHHHHHHh
Q 001978 612 NETHEVIKYLEFCVHRLHN-EDPGVHNLLLSLYAKQEDDSALLRFLQCK 659 (987)
Q Consensus 612 ~~~~~~~~YLe~li~~~~~-~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~ 659 (987)
...+.+..|++....+.+. .+...++.++.+|++.+.-++..+++++-
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 1356788999988855543 45678899999999977667777888774
No 37
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.13 E-value=0.0053 Score=53.41 Aligned_cols=48 Identities=25% Similarity=0.562 Sum_probs=37.5
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+..++.|.+|..++.+.. .++..++...|++.-.|+|.||..|+.+-+
T Consensus 18 ~~~dd~CgICr~~fdg~C------p~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl 65 (85)
T PF12861_consen 18 VANDDVCGICRMPFDGCC------PDCKFPGDDCPLVWGKCSHNFHMHCILKWL 65 (85)
T ss_pred cCCCCceeeEecccccCC------CCccCCCCCCceeeccCccHHHHHHHHHHH
Confidence 455889999999988732 123345667799988999999999998775
No 38
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.10 E-value=0.098 Score=57.34 Aligned_cols=35 Identities=31% Similarity=0.761 Sum_probs=28.8
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
--|..||+.+.. +. ..+=..||.|.||.+|+....
T Consensus 366 L~Cg~CGe~~Gl-----k~----------e~LqALpCsHIfH~rCl~e~L 400 (518)
T KOG1941|consen 366 LYCGLCGESIGL-----KN----------ERLQALPCSHIFHLRCLQEIL 400 (518)
T ss_pred hhhhhhhhhhcC-----Cc----------ccccccchhHHHHHHHHHHHH
Confidence 479999999988 41 256678999999999998765
No 39
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.98 E-value=0.89 Score=57.09 Aligned_cols=305 Identities=10% Similarity=0.118 Sum_probs=148.4
Q ss_pred HHchhhHHHHHHhcCC----chh-HhHHHHHHHHHHHhcCCHHHHHHHHHhhc--CCCChHHHHHHhcCcChHHHHHHHH
Q 001978 371 YLDMKEYAAALANCRD----PLQ-RDQVYLVQAEAAFATKDFHRAASFYAKIN--YILSFEEITLKFISVSEQDALRTFL 443 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~----~~~-~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~--~~~~~E~v~lkFl~~~~~~~L~~YL 443 (987)
+...+.++.|.++-.. ... -..++......+...|++++|.++|.+.. +...|..++.-|.+.++.+.-...+
T Consensus 133 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 133 CIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 4455666666665321 111 12344555666777788888888887654 3356777777777777655444444
Q ss_pred HHHhh-ccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhcc---ccCCHHHHHHHHH
Q 001978 444 LRKLD-NLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCK---DVLDEATTMKLLE 519 (987)
Q Consensus 444 ~~kl~-~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~---~~ld~~tv~~ll~ 519 (987)
....+ ....+..+...+|... . ....+. . -.++...+.+.. +..-..++.+.+.
T Consensus 213 ~~M~~~g~~p~~~t~~~ll~a~-----~-~~~~~~------------~----~~~l~~~~~~~g~~~d~~~~n~Li~~y~ 270 (697)
T PLN03081 213 REMWEDGSDAEPRTFVVMLRAS-----A-GLGSAR------------A----GQQLHCCVLKTGVVGDTFVSCALIDMYS 270 (697)
T ss_pred HHHHHhCCCCChhhHHHHHHHH-----h-cCCcHH------------H----HHHHHHHHHHhCCCccceeHHHHHHHHH
Confidence 43322 2223333333333221 1 111110 0 011222221111 1112234566667
Q ss_pred HcCChhHHHHHHHhH-----hhHHHHHHHHHhcccHHHHHHHHhCCCC---chhhHHhhHHHH---Hh-HChHHHHHHH-
Q 001978 520 SYGRVEELVFFASLK-----EQHEIVVHHYIQQGEAKKALQMLRKPAV---PIDLQYKFAPDL---IM-LDAYETVESW- 586 (987)
Q Consensus 520 ~~g~~e~~l~~a~~~-----~dy~~ll~~yi~~~~~~~AL~~l~~~~~---~~~li~k~~~~L---l~-~~p~~ti~~l- 586 (987)
..|+.+++..+.+.+ --|..++.-|.+.|++++|++++.+... .++ ..-|...+ .. ...+++.+++
T Consensus 271 k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccchHHHHHHHH
Confidence 778888877766643 2577888889999999999988865421 011 11222221 11 1222333332
Q ss_pred --HcCCCCCCCc-chhhhh-hcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCC
Q 001978 587 --MTTNNLNPRK-LIPAMM-RYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGK 662 (987)
Q Consensus 587 --~~~~~ld~~~-lip~L~-~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~ 662 (987)
++. .+++.. +..+|. .|.+. ..-+.|...++.+ ...+...+|.++.-|++.+..++.+..++.-...
T Consensus 350 ~m~~~-g~~~d~~~~~~Li~~y~k~----G~~~~A~~vf~~m----~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 350 GLIRT-GFPLDIVANTALVDLYSKW----GRMEDARNVFDRM----PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred HHHHh-CCCCCeeehHHHHHHHHHC----CCHHHHHHHHHhC----CCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 333332 112222 12111 1233455444433 2235566778888887765444444444432100
Q ss_pred CCCCCCc------------ccCChHHHHHHHHh----cC------cceeeehhhhccccHHHHHHHHHh
Q 001978 663 GRENGPE------------FFYDPKYALRLCLK----EK------RMRACVHIYGMMSMHEEAVALALQ 709 (987)
Q Consensus 663 ~~~~~~~------------~~yd~~~aLrlc~~----~~------~~~~~v~L~~~~g~~~eAl~l~l~ 709 (987)
+. .|+ ..-+++.|+++... ++ .+..+|-+|++.|+.++|++++-+
T Consensus 421 g~--~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 421 GV--APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred CC--CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 00 000 01234455554432 22 234577889999999999988754
No 40
>PHA02929 N1R/p28-like protein; Provisional
Probab=95.94 E-value=0.015 Score=61.44 Aligned_cols=40 Identities=23% Similarity=0.600 Sum_probs=26.9
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEE-cCCChhHHHhHHHH
Q 001978 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVF-PCGHAFHAQCLIAH 882 (987)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvF-pCgH~fH~~CL~~~ 882 (987)
..+..|++|...+.......+ .+.+- +|||.||.+|+..-
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~------------~~~vl~~C~H~FC~~CI~~W 212 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNM------------YFGILSNCNHVFCIECIDIW 212 (238)
T ss_pred CCCCCCccCCcccccCccccc------------cceecCCCCCcccHHHHHHH
Confidence 356799999998765211000 23344 69999999999764
No 41
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.93 E-value=0.00024 Score=69.92 Aligned_cols=133 Identities=17% Similarity=0.228 Sum_probs=96.8
Q ss_pred CCChHHHHHHhcCcChHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHH
Q 001978 420 ILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFR 499 (987)
Q Consensus 420 ~~~~E~v~lkFl~~~~~~~L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~ 499 (987)
..+.+.|+..|.+.+....|..||......-...+ ..+.+-++++|... .. .+++.
T Consensus 7 ~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~----~~~~~~L~~ly~~~-~~-------------------~~~l~ 62 (143)
T PF00637_consen 7 PLEISEVISAFEERNQPEELIEYLEALVKENKENN----PDLHTLLLELYIKY-DP-------------------YEKLL 62 (143)
T ss_dssp TSCSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-S----HHHHHHHHHHHHCT-TT-------------------CCHHH
T ss_pred ccCHHHHHHHHHhCCCHHHHHHHHHHHHhcccccC----HHHHHHHHHHHHhc-CC-------------------chHHH
Confidence 35667899999999999999999998664332222 23335566667621 10 14677
Q ss_pred HHHhhccccCCHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHHhHC
Q 001978 500 AFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLD 578 (987)
Q Consensus 500 ~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~~~~li~k~~~~Ll~~~ 578 (987)
.||+.+.. +|.+.+.+++..+|..+++++++...++|...+..+...+++++|+++..+.++ .+++......++...
T Consensus 63 ~~L~~~~~-yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~-~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 63 EFLKTSNN-YDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDD-PELWEQLLKYCLDSK 139 (143)
T ss_dssp HTTTSSSS-S-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSS-SHHHHHHHHHHCTST
T ss_pred HHcccccc-cCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCc-HHHHHHHHHHHHhcC
Confidence 88886554 799999999999999999999999999999988875567889999988888877 477776666555443
No 42
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.88 E-value=0.14 Score=57.41 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=86.0
Q ss_pred EeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCe-EEEEeecCCCccEE-EEecCCC-Ccee
Q 001978 29 AGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSH-CIATIVGSGGAETF-YTHAKWS-KPRV 104 (987)
Q Consensus 29 v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~h-lli~~~~~~~g~~~-Y~~~~~~-k~k~ 104 (987)
--.|+|+=|-...+|..||+ .+.-...+.-+ ..+|..+-..|..-- ++..+- +|.+- +=++... -.+.
T Consensus 254 ~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~-----~k~Vq~l~wh~~~p~~LLsGs~---D~~V~l~D~R~~~~s~~~ 325 (463)
T KOG0270|consen 254 NFRNVLASGSADKTVKLWDVDTGKPKSSITHH-----GKKVQTLEWHPYEPSVLLSGSY---DGTVALKDCRDPSNSGKE 325 (463)
T ss_pred ccceeEEecCCCceEEEEEcCCCCcceehhhc-----CCceeEEEecCCCceEEEeccc---cceEEeeeccCccccCce
Confidence 34568888889999999999 33333333322 367888888886444 444333 45442 2223111 1111
Q ss_pred ccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceE
Q 001978 105 LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRY 184 (987)
Q Consensus 105 L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~ 184 (987)
- |+- -.|+.|+|++. +...|++||.+|.+|.+.+-.. . +.++++.--.++|.||.+.. ...++
T Consensus 326 w-k~~-g~VEkv~w~~~-----se~~f~~~tddG~v~~~D~R~~---~---~~vwt~~AHd~~ISgl~~n~----~~p~~ 388 (463)
T KOG0270|consen 326 W-KFD-GEVEKVAWDPH-----SENSFFVSTDDGTVYYFDIRNP---G---KPVWTLKAHDDEISGLSVNI----QTPGL 388 (463)
T ss_pred E-Eec-cceEEEEecCC-----CceeEEEecCCceEEeeecCCC---C---CceeEEEeccCCcceEEecC----CCCcc
Confidence 1 122 38999999954 3558999999999999877443 1 44454431125799999964 22356
Q ss_pred EEEEECCCeEEEE
Q 001978 185 YVMAVTPTRLYSF 197 (987)
Q Consensus 185 ~i~ast~~rly~f 197 (987)
+..++|..-+--|
T Consensus 389 l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 389 LSTASTDKVVKLW 401 (463)
T ss_pred eeeccccceEEEE
Confidence 6666664433333
No 43
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.88 E-value=3.2 Score=54.13 Aligned_cols=301 Identities=8% Similarity=0.039 Sum_probs=162.5
Q ss_pred HHHHHHchhhHHHHHHhcCCchhHh-HHHHHHHHHHHhcCCHHHHHHHHHhhc------CCCChHHHHHHhcCcChHHHH
Q 001978 367 MWKVYLDMKEYAAALANCRDPLQRD-QVYLVQAEAAFATKDFHRAASFYAKIN------YILSFEEITLKFISVSEQDAL 439 (987)
Q Consensus 367 ~W~~ll~~~~fe~Al~~~~~~~~~~-~V~~~~~~~l~~~g~y~~Aa~~~~~~~------~~~~~E~v~lkFl~~~~~~~L 439 (987)
.++.+.+.|.+++|+.+++.-...+ ..+..-...+...|++++|.++|.+.. +...|..++..+.+.++.+..
T Consensus 412 li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A 491 (1060)
T PLN03218 412 FFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHH
Confidence 3455667788999999876311111 223334455567899999999988764 123455666667777777665
Q ss_pred HHHHHHHhhc-cCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHH---HHH
Q 001978 440 RTFLLRKLDN-LAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEA---TTM 515 (987)
Q Consensus 440 ~~YL~~kl~~-l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~---tv~ 515 (987)
...+....+. ...+..+.-.+| ..|.. ...+ .....-|+..... .-.-|.. ++.
T Consensus 492 ~~vf~eM~~~Gv~PdvvTynaLI-----~gy~k-~G~~---------------eeAl~lf~~M~~~-Gv~PD~vTYnsLI 549 (1060)
T PLN03218 492 FEVFHEMVNAGVEANVHTFGALI-----DGCAR-AGQV---------------AKAFGAYGIMRSK-NVKPDRVVFNALI 549 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHH-----HHHHH-CcCH---------------HHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 5555543321 222333322222 22221 1111 1111112221111 1111322 344
Q ss_pred HHHHHcCChhHHHHHHHhHh-----------hHHHHHHHHHhcccHHHHHHHHhCCCC----chhhHHh-hHHHHH-hHC
Q 001978 516 KLLESYGRVEELVFFASLKE-----------QHEIVVHHYIQQGEAKKALQMLRKPAV----PIDLQYK-FAPDLI-MLD 578 (987)
Q Consensus 516 ~ll~~~g~~e~~l~~a~~~~-----------dy~~ll~~yi~~~~~~~AL~~l~~~~~----~~~li~k-~~~~Ll-~~~ 578 (987)
..+...|..+++..+...+. -|..++..|.+.|++++|++++..+.. +....|. ....+. ..+
T Consensus 550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Confidence 55556788888877665442 377889999999999999999875432 1111221 111111 245
Q ss_pred hHHHHHHHHcC--CCCCCCcc-hhhhh-hcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHH
Q 001978 579 AYETVESWMTT--NNLNPRKL-IPAMM-RYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLR 654 (987)
Q Consensus 579 p~~ti~~l~~~--~~ld~~~l-ip~L~-~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~ 654 (987)
.++++++|-+. ..+.|... ...+. .|... ...+.+..+++.+....-..+...+|.++..|++.++-++...
T Consensus 630 ~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~----G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA----GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 67777777433 34555531 12222 12111 1356688888888766555678899999999999765444444
Q ss_pred HHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh
Q 001978 655 FLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ 709 (987)
Q Consensus 655 fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~ 709 (987)
+++.-... ...++.. -+...+..|++.|++++|++++-.
T Consensus 706 lf~eM~~~--------g~~Pdvv--------tyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 706 LYEDIKSI--------KLRPTVS--------TMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHc--------CCCCCHH--------HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44433100 0111111 134456667778888888777653
No 44
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=95.85 E-value=0.003 Score=47.09 Aligned_cols=21 Identities=38% Similarity=0.925 Sum_probs=18.9
Q ss_pred CEEEEcCCChhHHHhHHHHHh
Q 001978 864 PFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 864 ~fvvFpCgH~fH~~CL~~~~~ 884 (987)
++++.+|||.|+.+|+.+...
T Consensus 11 ~~~~~~CGH~fC~~C~~~~~~ 31 (39)
T PF13923_consen 11 PVVVTPCGHSFCKECIEKYLE 31 (39)
T ss_dssp EEEECTTSEEEEHHHHHHHHH
T ss_pred cCEECCCCCchhHHHHHHHHH
Confidence 789999999999999998764
No 45
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.83 E-value=0.21 Score=56.31 Aligned_cols=71 Identities=18% Similarity=0.112 Sum_probs=52.7
Q ss_pred hhcCCCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 17 AAKGRGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 17 ~~~~~~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
...-|+.++|++..|+ +++.|+..|.||.|-+ .+.-..-+.-| =..|+.+-+.-.|.|+|..++ ||.++
T Consensus 77 ~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH-----YQ~ITcL~fs~dgs~iiTgsk---Dg~V~ 148 (476)
T KOG0646|consen 77 YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH-----YQSITCLKFSDDGSHIITGSK---DGAVL 148 (476)
T ss_pred hcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhh-----ccceeEEEEeCCCcEEEecCC---CccEE
Confidence 3445678999999886 7788889999999999 44443333222 256888888888999988887 88886
Q ss_pred EE
Q 001978 94 YT 95 (987)
Q Consensus 94 Y~ 95 (987)
-+
T Consensus 149 vW 150 (476)
T KOG0646|consen 149 VW 150 (476)
T ss_pred EE
Confidence 44
No 46
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.44 Score=57.32 Aligned_cols=79 Identities=13% Similarity=0.192 Sum_probs=63.6
Q ss_pred HHHHHHHHhhccccCCHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHHHHHh-cccHHHHHHHHhCCCCchhhHHhhHHH
Q 001978 495 MREFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQ-QGEAKKALQMLRKPAVPIDLQYKFAPD 573 (987)
Q Consensus 495 ~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~-~~~~~~AL~~l~~~~~~~~li~k~~~~ 573 (987)
+..|-.||++.. ..+.+.++++|...|..+|.+|+.-.+|.....+.+-|+ .++.++|+++.+.+.| .+++......
T Consensus 622 rk~LLPFLr~s~-~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D-~eLWe~LI~~ 699 (846)
T KOG2066|consen 622 RKKLLPFLRKSQ-NYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDD-SELWEDLINY 699 (846)
T ss_pred HhhhhHHHHhcC-CCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCC-HHHHHHHHHH
Confidence 456678887654 347888999999999999999999999988888888886 4899999999999988 4777655444
Q ss_pred HH
Q 001978 574 LI 575 (987)
Q Consensus 574 Ll 575 (987)
-+
T Consensus 700 ~l 701 (846)
T KOG2066|consen 700 SL 701 (846)
T ss_pred hh
Confidence 44
No 47
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=95.62 E-value=0.0047 Score=53.10 Aligned_cols=45 Identities=27% Similarity=0.660 Sum_probs=29.7
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
.+.|++|..+|.....+ .+..+...+++.-+|||.||..|+.+-+
T Consensus 19 ~d~C~IC~~~l~~~~~~------~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl 63 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPE------CQAPQDECPIVWGPCGHIFHFHCISQWL 63 (73)
T ss_dssp CSBETTTTSBTTSTTCC------HHHCTTTS-EEEETTSEEEEHHHHHHHH
T ss_pred CCcccccChhhhChhhh------hcCCccccceEecccCCCEEHHHHHHHH
Confidence 45699999999653221 0111122467777899999999997665
No 48
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.58 E-value=0.48 Score=60.40 Aligned_cols=150 Identities=7% Similarity=0.026 Sum_probs=99.2
Q ss_pred CceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEEe
Q 001978 22 GVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 22 ~~i~~~~v~---nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~~ 96 (987)
..+++++.+ ++.++.|..+|+|..||+ ....+..+.-+ ...|..+-.+| .|..++.++. +|....++
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H-----~~~V~~l~~~p~~~~~L~Sgs~---Dg~v~iWd 604 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEH-----EKRVWSIDYSSADPTLLASGSD---DGSVKLWS 604 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCC-----CCCEEEEEEcCCCCCEEEEEcC---CCEEEEEE
Confidence 457777775 468888889999999999 44444444333 36799999987 5777777776 89888887
Q ss_pred cCCCC-ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 97 AKWSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 97 ~~~~k-~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
....+ ...+. .+ ..|.+++|+++. ...++.|+.+|.|+...+.... . .+..+..-..+|+.+.|..
T Consensus 605 ~~~~~~~~~~~-~~-~~v~~v~~~~~~-----g~~latgs~dg~I~iwD~~~~~---~---~~~~~~~h~~~V~~v~f~~ 671 (793)
T PLN00181 605 INQGVSIGTIK-TK-ANICCVQFPSES-----GRSLAFGSADHKVYYYDLRNPK---L---PLCTMIGHSKTVSYVRFVD 671 (793)
T ss_pred CCCCcEEEEEe-cC-CCeEEEEEeCCC-----CCEEEEEeCCCeEEEEECCCCC---c---cceEecCCCCCEEEEEEeC
Confidence 65433 22232 12 478999997332 2368899999999988775421 1 1122222235699998841
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 001978 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (987)
...++.+++...+.-|.
T Consensus 672 ------~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 672 ------SSTLVSSSTDNTLKLWD 688 (793)
T ss_pred ------CCEEEEEECCCEEEEEe
Confidence 24677767777777664
No 49
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=95.55 E-value=0.67 Score=48.13 Aligned_cols=132 Identities=19% Similarity=0.210 Sum_probs=79.9
Q ss_pred CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEeecC
Q 001978 41 GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNR 120 (987)
Q Consensus 41 g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~ 120 (987)
..|+++|.....+..+++.. .++|+.+--.|+|..++|++... .+..-..+.+ .+++..+....+.+|.|+|
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~----~~~I~~~~WsP~g~~favi~g~~-~~~v~lyd~~---~~~i~~~~~~~~n~i~wsP 110 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKK----EGPIHDVAWSPNGNEFAVIYGSM-PAKVTLYDVK---GKKIFSFGTQPRNTISWSP 110 (194)
T ss_pred EEEEEEecCCCccceeeccC----CCceEEEEECcCCCEEEEEEccC-CcccEEEcCc---ccEeEeecCCCceEEEECC
Confidence 46888888334456666653 34699999999999988775311 2333333333 3444445556788999994
Q ss_pred CCCCCCCcceEEEEcC---CCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECC------
Q 001978 121 QQITEASTKEIILGTD---TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTP------ 191 (987)
Q Consensus 121 ~~~~~~st~~iLiGt~---~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~------ 191 (987)
. .+-+++|+- .|.|....+.. .+.+.+... ..++.+.|. .+.++++.++|.
T Consensus 111 ~------G~~l~~~g~~n~~G~l~~wd~~~-------~~~i~~~~~--~~~t~~~Ws-----PdGr~~~ta~t~~r~~~d 170 (194)
T PF08662_consen 111 D------GRFLVLAGFGNLNGDLEFWDVRK-------KKKISTFEH--SDATDVEWS-----PDGRYLATATTSPRLRVD 170 (194)
T ss_pred C------CCEEEEEEccCCCcEEEEEECCC-------CEEeecccc--CcEEEEEEc-----CCCCEEEEEEeccceecc
Confidence 3 235666643 46666655542 244433332 347888886 334788877663
Q ss_pred --CeEEEEecC
Q 001978 192 --TRLYSFTGF 200 (987)
Q Consensus 192 --~rly~f~g~ 200 (987)
-+|+.|.|.
T Consensus 171 ng~~Iw~~~G~ 181 (194)
T PF08662_consen 171 NGFKIWSFQGR 181 (194)
T ss_pred ccEEEEEecCe
Confidence 267777764
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.54 E-value=0.24 Score=51.26 Aligned_cols=157 Identities=13% Similarity=0.136 Sum_probs=98.8
Q ss_pred hhcCCCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 001978 17 AAKGRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 17 ~~~~~~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (987)
+..+.|.|+++.|+...++-|...|++-++|+ .+....++- ..+|+.+.+.|.|.-.++++- ++..--+
T Consensus 141 ldea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~-------g~pit~vs~s~d~nc~La~~l---~stlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYF-------GHPITSVSFSKDGNCSLASSL---DSTLRLL 210 (307)
T ss_pred hhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhc-------CCcceeEEecCCCCEEEEeec---cceeeec
Confidence 35677889999999999999999999999999 443322221 257999999999999888877 5665555
Q ss_pred ecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCc-eeeEEEE
Q 001978 96 HAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEA-FMGLQME 174 (987)
Q Consensus 96 ~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~-I~gi~~~ 174 (987)
...+ -+.|...||+.=..--.+-. .+. +.-.++=|+++|.+|...+... +++..++-...+ |++|...
T Consensus 211 Dk~t--GklL~sYkGhkn~eykldc~-l~q-sdthV~sgSEDG~Vy~wdLvd~-------~~~sk~~~~~~v~v~dl~~h 279 (307)
T KOG0316|consen 211 DKET--GKLLKSYKGHKNMEYKLDCC-LNQ-SDTHVFSGSEDGKVYFWDLVDE-------TQISKLSVVSTVIVTDLSCH 279 (307)
T ss_pred ccch--hHHHHHhcccccceeeeeee-ecc-cceeEEeccCCceEEEEEeccc-------eeeeeeccCCceeEEeeecc
Confidence 4433 34555566654333222211 111 1224566778899999988653 444444421122 5555554
Q ss_pred eeccCCCceEEEEEECCCeEEEEecC
Q 001978 175 TASLSNGTRYYVMAVTPTRLYSFTGF 200 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~g~ 200 (987)
. ....++. ++..+.|.|.+.
T Consensus 280 p-----~~~~f~~-A~~~~~~~~~~~ 299 (307)
T KOG0316|consen 280 P-----TMDDFIT-ATGHGDLFWYQE 299 (307)
T ss_pred c-----CccceeE-ecCCceeceeeh
Confidence 2 1223444 566777768763
No 51
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.53 E-value=3.1 Score=51.47 Aligned_cols=134 Identities=14% Similarity=0.127 Sum_probs=72.5
Q ss_pred HcCChhHHHHHHHhH--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHh-HChHHHHHHH
Q 001978 520 SYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIM-LDAYETVESW 586 (987)
Q Consensus 520 ~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~l~~~----~~~~~li~k~~~~Ll~-~~p~~ti~~l 586 (987)
..|+.++++...+.. ..|-.+...|...|+|++|++.+.+. ++..+.++..+..++. .+.++++..+
T Consensus 343 ~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 457777777666542 23445566777788888888776532 2223455555544443 4556666666
Q ss_pred HcCCCCCCCcchhhhh---hcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHH
Q 001978 587 MTTNNLNPRKLIPAMM---RYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQC 658 (987)
Q Consensus 587 ~~~~~ld~~~lip~L~---~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~ 658 (987)
.+.-.++|......+. -+.. ....+.++.+++..+...+ .++.+++.+-.+|...++-++-+..++.
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYK----EGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5444555554322110 0000 0124557777777765443 3566677776677665544444444444
No 52
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=95.52 E-value=0.011 Score=44.90 Aligned_cols=31 Identities=29% Similarity=0.882 Sum_probs=24.8
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
.|.+|...+.. ++.+.+|||.||..|+....
T Consensus 1 ~C~iC~~~~~~------------------~~~~~~C~H~~c~~C~~~~~ 31 (45)
T cd00162 1 ECPICLEEFRE------------------PVVLLPCGHVFCRSCIDKWL 31 (45)
T ss_pred CCCcCchhhhC------------------ceEecCCCChhcHHHHHHHH
Confidence 48899888732 66677799999999998765
No 53
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.50 E-value=0.41 Score=57.71 Aligned_cols=131 Identities=17% Similarity=0.257 Sum_probs=84.4
Q ss_pred CCCceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 20 GRGVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 20 ~~~~i~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
=++.|+|++.....++.|..+ .|+.+--+ ..+..+-.+. ..+|+ ++.|-|.|++.++. ++-.|.++...
T Consensus 75 lp~~I~alas~~~~vy~A~g~-~i~~~~rg-k~i~~~~~~~----~a~v~--~l~~fGe~lia~d~---~~~l~vw~~s~ 143 (910)
T KOG1539|consen 75 LPDKITALASDKDYVYVASGN-KIYAYARG-KHIRHTTLLH----GAKVH--LLLPFGEHLIAVDI---SNILFVWKTSS 143 (910)
T ss_pred CCCceEEEEecCceEEEecCc-EEEEEEcc-ceEEEEeccc----cceEE--EEeeecceEEEEEc---cCcEEEEEecc
Confidence 357899999999999988877 55544331 1122222221 13444 35789999999998 78888777655
Q ss_pred CC-c----eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEE
Q 001978 100 SK-P----RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (987)
Q Consensus 100 ~k-~----k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~ 173 (987)
.+ . -.+-+..|-.|+++.=.+.+. ..|++|.++|.+-..++..+ |.||++++-+..||.|+-
T Consensus 144 ~~~e~~l~~~~~~~~~~~Ital~HP~TYL-----NKIvvGs~~G~lql~Nvrt~-------K~v~~f~~~~s~IT~ieq 210 (910)
T KOG1539|consen 144 IQEELYLQSTFLKVEGDFITALLHPSTYL-----NKIVVGSSQGRLQLWNVRTG-------KVVYTFQEFFSRITAIEQ 210 (910)
T ss_pred ccccccccceeeeccCCceeeEecchhhe-----eeEEEeecCCcEEEEEeccC-------cEEEEecccccceeEecc
Confidence 21 1 122233455588877653333 37999999999999888765 677777754444555543
No 54
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.28 E-value=2.8 Score=52.18 Aligned_cols=270 Identities=10% Similarity=0.010 Sum_probs=136.9
Q ss_pred hhHHHHHHchhhHHHHHHhcCC-----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhcC-----CCChHHHHHHhcCcC
Q 001978 365 RDMWKVYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKINY-----ILSFEEITLKFISVS 434 (987)
Q Consensus 365 ~~~W~~ll~~~~fe~Al~~~~~-----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~-----~~~~E~v~lkFl~~~ 434 (987)
+.+-.-++..|++++|+.+++. |.+ ...+...|--++..|++++|...|.+... ...+-.....+...+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 4455568888999999999763 333 33455555666779999999999988751 112223333444555
Q ss_pred hHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHHHH
Q 001978 435 EQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATT 514 (987)
Q Consensus 435 ~~~~L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv 514 (987)
+.+.=...+..-+..-+.+... ...+..+|.. ..+ +......+++.+....+.-+.-..
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a-----~~~la~~l~~-~g~---------------~~eA~~~~~~~~~~~P~~~~a~~~ 183 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQI-----FALHLRTLVL-MDK---------------ELQAISLARTQAQEVPPRGDMIAT 183 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHH-----HHHHHHHHHH-CCC---------------hHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5555455555444422222111 1122223221 111 111122233333222111000000
Q ss_pred HHHHHHcCChhHHHHHHHhHhh---------HHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHhH-ChH
Q 001978 515 MKLLESYGRVEELVFFASLKEQ---------HEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIML-DAY 580 (987)
Q Consensus 515 ~~ll~~~g~~e~~l~~a~~~~d---------y~~ll~~yi~~~~~~~AL~~l~~~----~~~~~li~k~~~~Ll~~-~p~ 580 (987)
.-.+...|+.++++..++..-. +..+...+...|++++|++.+.+. ++.....+..+..+... ...
T Consensus 184 ~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 184 CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSR 263 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCch
Confidence 1123456888888776654211 112345677889999999887642 23345555666666542 222
Q ss_pred ----HHHHHHHcCCCCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHH
Q 001978 581 ----ETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFL 656 (987)
Q Consensus 581 ----~ti~~l~~~~~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL 656 (987)
+++..+-+.-.++|... .....+-...........++.+++..+...+ .++.++..+...|...++.++-+..+
T Consensus 264 eA~~~A~~~~~~Al~l~P~~~-~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l 341 (656)
T PRK15174 264 EAKLQAAEHWRHALQFNSDNV-RIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEF 341 (656)
T ss_pred hhHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 25555544335566532 1111110000001235678888888876544 35667777777777765545555555
Q ss_pred HH
Q 001978 657 QC 658 (987)
Q Consensus 657 ~~ 658 (987)
+.
T Consensus 342 ~~ 343 (656)
T PRK15174 342 VQ 343 (656)
T ss_pred HH
Confidence 44
No 55
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=95.19 E-value=1 Score=51.47 Aligned_cols=162 Identities=9% Similarity=0.125 Sum_probs=109.2
Q ss_pred HhhcCCCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCce---------eeEcCCCC-----C-----------------
Q 001978 16 YAAKGRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSY---------DIDLSAGR-----P----------------- 63 (987)
Q Consensus 16 ~~~~~~~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~---------~~~l~~~~-----~----------------- 63 (987)
..|...+.|..++-+..-+++||..+.|+.=.+ +.-... -+-++... .
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt 403 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWT 403 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEE
Confidence 345555678888888777999999999998877 322210 11111110 0
Q ss_pred --CccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEE
Q 001978 64 --GEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLH 141 (987)
Q Consensus 64 --~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~ 141 (987)
-..+...+-++|+| |+++-+. .|--+-++......-.+.+- |-++++|+++++- --+-+|+.++.||
T Consensus 404 ~~~~d~~~~~~fhpsg-~va~Gt~---~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G------~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 404 KIIEDPAECADFHPSG-VVAVGTA---TGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDG------AFLAVGSHDNHIY 472 (626)
T ss_pred EEecCceeEeeccCcc-eEEEeec---cceEEEEecccceeEEEEec-CCceEEEEEcCCC------CEEEEecCCCeEE
Confidence 02456667788999 9999988 78888888766555556554 8899999999432 2688999999999
Q ss_pred EEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 142 EMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 142 e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.+.+..+++ ..+.+=...+ .||+-+-|.. +.++++-.|.+-.|..|.
T Consensus 473 iy~Vs~~g~---~y~r~~k~~g--s~ithLDwS~-----Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 473 IYRVSANGR---KYSRVGKCSG--SPITHLDWSS-----DSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEECCCCc---EEEEeeeecC--ceeEEeeecC-----CCceEEeccCceEEEEEc
Confidence 999987632 2333323443 6799999963 346776666555555583
No 56
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.07 E-value=1.2 Score=56.91 Aligned_cols=156 Identities=10% Similarity=0.085 Sum_probs=98.3
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEe-CCCCCeEEEEeecCCCccEEEE
Q 001978 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFV-DPGGSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 21 ~~~i~~~~v~n---n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~l-Dp~G~hlli~~~~~~~g~~~Y~ 95 (987)
.+.|++++.+. +.++-|..+|+|..||+ ....+..+..+ ..|..+-. .+.|.++++++. +|..+++
T Consensus 575 ~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~------~~v~~v~~~~~~g~~latgs~---dg~I~iw 645 (793)
T PLN00181 575 EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK------ANICCVQFPSESGRSLAFGSA---DHKVYYY 645 (793)
T ss_pred CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC------CCeEEEEEeCCCCCEEEEEeC---CCeEEEE
Confidence 35699999973 57888889999999999 44444444322 24555544 677998888887 8999888
Q ss_pred ecCCCCceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEE
Q 001978 96 HAKWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (987)
Q Consensus 96 ~~~~~k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~ 173 (987)
+....+. ++..+.| ..|.+|+|.+ ...++.|+.+|.|-...+..... ....+.+..+.+-...+..+.+
T Consensus 646 D~~~~~~-~~~~~~~h~~~V~~v~f~~-------~~~lvs~s~D~~ikiWd~~~~~~-~~~~~~l~~~~gh~~~i~~v~~ 716 (793)
T PLN00181 646 DLRNPKL-PLCTMIGHSKTVSYVRFVD-------SSTLVSSSTDNTLKLWDLSMSIS-GINETPLHSFMGHTNVKNFVGL 716 (793)
T ss_pred ECCCCCc-cceEecCCCCCEEEEEEeC-------CCEEEEEECCCEEEEEeCCCCcc-ccCCcceEEEcCCCCCeeEEEE
Confidence 8755431 1222233 4799999962 12688999999887766543210 0011233344332245666666
Q ss_pred EeeccCCCceEEEEEECCCeEEEEec
Q 001978 174 ETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
.. ..++++.++....++-|.-
T Consensus 717 s~-----~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 717 SV-----SDGYIATGSETNEVFVYHK 737 (793)
T ss_pred cC-----CCCEEEEEeCCCEEEEEEC
Confidence 42 2357777777888887753
No 57
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=95.06 E-value=0.052 Score=50.52 Aligned_cols=49 Identities=18% Similarity=0.124 Sum_probs=30.8
Q ss_pred HHHHHHHhhccccCCHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHHHHH
Q 001978 496 REFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYI 545 (987)
Q Consensus 496 ~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi 545 (987)
..+..|++.. +.+|.+.+-+.|.++|++.+++.|....|.|+..+.++.
T Consensus 15 ~~l~~llr~~-N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~ 63 (108)
T PF10366_consen 15 SLLGPLLRLP-NYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLK 63 (108)
T ss_pred HHHHHHHccC-CcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHH
Confidence 4566777755 666888888888887776665555444444444444444
No 58
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=94.91 E-value=0.024 Score=41.34 Aligned_cols=21 Identities=33% Similarity=0.793 Sum_probs=18.0
Q ss_pred CEEEEcCCChhHHHhHHHHHh
Q 001978 864 PFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 864 ~fvvFpCgH~fH~~CL~~~~~ 884 (987)
..++.+|||.||..|+.....
T Consensus 10 ~~~~~~C~H~~c~~C~~~~~~ 30 (39)
T smart00184 10 DPVVLPCGHTFCRSCIRKWLK 30 (39)
T ss_pred CcEEecCCChHHHHHHHHHHH
Confidence 677889999999999987653
No 59
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.57 E-value=9.8 Score=47.79 Aligned_cols=307 Identities=12% Similarity=0.066 Sum_probs=151.7
Q ss_pred HHHHchhhHHHHHHhcC---C--chhH-hHHHHHHHHHHHhcCCHHHHHHHHHhhc------CCCChHHHHHHhcCcChH
Q 001978 369 KVYLDMKEYAAALANCR---D--PLQR-DQVYLVQAEAAFATKDFHRAASFYAKIN------YILSFEEITLKFISVSEQ 436 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~---~--~~~~-~~V~~~~~~~l~~~g~y~~Aa~~~~~~~------~~~~~E~v~lkFl~~~~~ 436 (987)
.-|...|++++|+++.+ . +... ...+......+...++++.|.+++.... +...+..++..+.+.++.
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCH
Confidence 44777889999988743 1 2221 2334455556666788888877776543 122344556666677776
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHHH---
Q 001978 437 DALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEAT--- 513 (987)
Q Consensus 437 ~~L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~t--- 513 (987)
+.-..++....+ ++..+..+++..+ ... ... .+..+-|+..+... ...|..|
T Consensus 175 ~~A~~lf~~m~~---~~~~t~n~li~~~-----~~~-g~~---------------~~A~~lf~~M~~~g-~~p~~~t~~~ 229 (697)
T PLN03081 175 IDARRLFDEMPE---RNLASWGTIIGGL-----VDA-GNY---------------REAFALFREMWEDG-SDAEPRTFVV 229 (697)
T ss_pred HHHHHHHhcCCC---CCeeeHHHHHHHH-----HHC-cCH---------------HHHHHHHHHHHHhC-CCCChhhHHH
Confidence 655544443211 2222333333333 210 110 01111222222111 1112222
Q ss_pred HHHHHHHcCChhHHHHHHHhH---------hhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHh-hHHHHH-hHChHHH
Q 001978 514 TMKLLESYGRVEELVFFASLK---------EQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYK-FAPDLI-MLDAYET 582 (987)
Q Consensus 514 v~~ll~~~g~~e~~l~~a~~~---------~dy~~ll~~yi~~~~~~~AL~~l~~~~~~~~li~k-~~~~Ll-~~~p~~t 582 (987)
+...+...|..+....+-... --|..++..|...|++++|.+++.+........|. ....+. ...++++
T Consensus 230 ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH
Confidence 222233334444333321111 12467889999999999999999887642111111 111111 2466778
Q ss_pred HHHHHcC--CCCCCCc-----chhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHH
Q 001978 583 VESWMTT--NNLNPRK-----LIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRF 655 (987)
Q Consensus 583 i~~l~~~--~~ld~~~-----lip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~f 655 (987)
.++|-+. ..+.|+. ++.++.+.. .-+.+...++.+....-..+..++|.++.+|++.+.-++....
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g-------~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v 382 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLA-------LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcc-------chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence 8887432 3455543 233332211 2345666667666655456778899999999986543344444
Q ss_pred HHHhhCCCCC------CCCcccCChHHHHHHHHh---cCcc------eeeehhhhccccHHHHHHHH
Q 001978 656 LQCKFGKGRE------NGPEFFYDPKYALRLCLK---EKRM------RACVHIYGMMSMHEEAVALA 707 (987)
Q Consensus 656 L~~~~~~~~~------~~~~~~yd~~~aLrlc~~---~~~~------~~~v~L~~~~g~~~eAl~l~ 707 (987)
+..-..+... ..-...=+.+.|+.++.+ .+.. ...+.-+.+.|+.++|.++.
T Consensus 383 f~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 383 FDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred HHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 4332100000 000011245667666654 2221 23333467778888877765
No 60
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=94.49 E-value=0.29 Score=58.93 Aligned_cols=150 Identities=12% Similarity=0.179 Sum_probs=98.5
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCc
Q 001978 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKP 102 (987)
Q Consensus 24 i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~ 102 (987)
..|+...+|+.++|+++|+|-++++ .+-....+- ....-+..|+.+-+|.+++-++.++. +|..-|+..+..-
T Consensus 453 av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~--~~~ah~~~V~gla~D~~n~~~vsa~~---~Gilkfw~f~~k~- 526 (910)
T KOG1539|consen 453 AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG--DSPAHKGEVTGLAVDGTNRLLVSAGA---DGILKFWDFKKKV- 526 (910)
T ss_pred EEEEeccCceEEEeccCCeEEEEEcccCeeecccc--cCccccCceeEEEecCCCceEEEccC---cceEEEEecCCcc-
Confidence 3445556899999999999999999 333233331 01112578999999999987777766 8999898875533
Q ss_pred eeccCC-CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCC
Q 001978 103 RVLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNG 181 (987)
Q Consensus 103 k~L~kl-kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~ 181 (987)
.+.++ -|+.++++.-.+. .+-+.++..+=.|..+....+ +-++. +-+-...|+...+. .+
T Consensus 527 -l~~~l~l~~~~~~iv~hr~------s~l~a~~~ddf~I~vvD~~t~----kvvR~---f~gh~nritd~~FS-----~D 587 (910)
T KOG1539|consen 527 -LKKSLRLGSSITGIVYHRV------SDLLAIALDDFSIRVVDVVTR----KVVRE---FWGHGNRITDMTFS-----PD 587 (910)
T ss_pred -eeeeeccCCCcceeeeeeh------hhhhhhhcCceeEEEEEchhh----hhhHH---hhccccceeeeEeC-----CC
Confidence 22222 2566777666532 335666666766777766543 12222 22112458888885 45
Q ss_pred ceEEEEEECCCeEEEEe
Q 001978 182 TRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 182 ~~~~i~ast~~rly~f~ 198 (987)
.||+|.|+-++.+..|+
T Consensus 588 grWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 588 GRWLISASMDSTIRTWD 604 (910)
T ss_pred CcEEEEeecCCcEEEEe
Confidence 69999999888888885
No 61
>PTZ00421 coronin; Provisional
Probab=94.47 E-value=1.9 Score=51.42 Aligned_cols=154 Identities=10% Similarity=0.026 Sum_probs=91.6
Q ss_pred eEEEEeCCEEEEEec-CCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEEecCCCC
Q 001978 25 TCMSAGNDVIVLGTS-KGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYTHAKWSK 101 (987)
Q Consensus 25 ~~~~v~nn~l~~~~~-~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (987)
.-++++.+++++... .|.+..+.+ ...+...- .|.-.+-.+.|..+-.+| .|..++.++. +|....++.....
T Consensus 34 ~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~-~~~l~GH~~~V~~v~fsP~d~~~LaSgS~---DgtIkIWdi~~~~ 109 (493)
T PTZ00421 34 NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASN-PPILLGQEGPIIDVAFNPFDPQKLFTASE---DGTIMGWGIPEEG 109 (493)
T ss_pred CcEeECCceEEEEEecCCceEEeeccccccCCCC-CceEeCCCCCEEEEEEcCCCCCEEEEEeC---CCEEEEEecCCCc
Confidence 357777788777653 244445555 33332211 111112247899999999 6777777777 8888777653321
Q ss_pred -----ceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 102 -----PRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 102 -----~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
..++..+.| ..|.+|+|++.. ..-++.|+.+|.|....+..+ +.+..+..-..+|.++.|.
T Consensus 110 ~~~~~~~~l~~L~gH~~~V~~l~f~P~~-----~~iLaSgs~DgtVrIWDl~tg-------~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 110 LTQNISDPIVHLQGHTKKVGIVSFHPSA-----MNVLASAGADMVVNVWDVERG-------KAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred cccccCcceEEecCCCCcEEEEEeCcCC-----CCEEEEEeCCCEEEEEECCCC-------eEEEEEcCCCCceEEEEEE
Confidence 122333444 479999999532 124667888999887777543 1222333223579999996
Q ss_pred eeccCCCceEEEEEECCCeEEEEec
Q 001978 175 TASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
. +...++.++.+..+.-|.-
T Consensus 178 p-----dG~lLatgs~Dg~IrIwD~ 197 (493)
T PTZ00421 178 L-----DGSLLCTTSKDKKLNIIDP 197 (493)
T ss_pred C-----CCCEEEEecCCCEEEEEEC
Confidence 3 2245665555777776753
No 62
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.46 E-value=5.1 Score=53.45 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=38.2
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++++|++++|++..+.. ......+...|+-++..|+|++|.+.|.+..
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL 412 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL 412 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456889999999987631 1223456677999999999999999999876
No 63
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=94.40 E-value=1.8 Score=46.83 Aligned_cols=149 Identities=18% Similarity=0.199 Sum_probs=88.6
Q ss_pred ceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCe-EEEEeecCCCccEEEEecC
Q 001978 23 VITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSH-CIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 23 ~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~h-lli~~~~~~~g~~~Y~~~~ 98 (987)
+|+|++-+.+ .|.-+.....+..||+ .|+-..+|.++ ++|...-..|.-.. +++|-- +-.-+-+..+
T Consensus 67 pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~------spv~~~q~hp~k~n~~va~~~---~~sp~vi~~s 137 (405)
T KOG1273|consen 67 PITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD------SPVWGAQWHPRKRNKCVATIM---EESPVVIDFS 137 (405)
T ss_pred ceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc------CccceeeeccccCCeEEEEEe---cCCcEEEEec
Confidence 4899988764 7777788899999999 88888899887 45666666665544 444433 2333444444
Q ss_pred CCCceeccCCCCceEE----EEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCC-CCceeeEEE
Q 001978 99 WSKPRVLSKLKGLVVN----AVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNEL-PEAFMGLQM 173 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~----sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~-~~~I~gi~~ 173 (987)
-++-+.|++--.-+.. ++.+++ ...-|+.||.+|.|..+.-+.- +.+..+.-. ...|..|.+
T Consensus 138 ~~~h~~Lp~d~d~dln~sas~~~fdr------~g~yIitGtsKGkllv~~a~t~-------e~vas~rits~~~IK~I~~ 204 (405)
T KOG1273|consen 138 DPKHSVLPKDDDGDLNSSASHGVFDR------RGKYIITGTSKGKLLVYDAETL-------ECVASFRITSVQAIKQIIV 204 (405)
T ss_pred CCceeeccCCCccccccccccccccC------CCCEEEEecCcceEEEEecchh-------eeeeeeeechheeeeEEEE
Confidence 4566667653222222 222331 2347999999999988766542 222222100 123555555
Q ss_pred EeeccCCCceEEEEEECCCeEEEEec
Q 001978 174 ETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
.+ ++ +++++ .|..|+.+-+.
T Consensus 205 s~---~g--~~lii-NtsDRvIR~ye 224 (405)
T KOG1273|consen 205 SR---KG--RFLII-NTSDRVIRTYE 224 (405)
T ss_pred ec---cC--cEEEE-ecCCceEEEEe
Confidence 43 33 56666 66666655443
No 64
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.39 E-value=1.1 Score=53.95 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=55.3
Q ss_pred HHHHcCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCC--CchhhHHhhHHHHHh-HChHHHHHHHH
Q 001978 517 LLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPA--VPIDLQYKFAPDLIM-LDAYETVESWM 587 (987)
Q Consensus 517 ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~--~~~~li~k~~~~Ll~-~~p~~ti~~l~ 587 (987)
|-..-|..|+++.++.+++.|+-+-.+|-..|.|++|+++-.... .....+|+|+..|-. .+-+.+++.+-
T Consensus 809 LAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 555679999999999999999999999999999999999876432 124678999988864 34444555443
No 65
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=94.34 E-value=1.5 Score=45.93 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=101.7
Q ss_pred eeEEEEeCCEEEEEecC-CeEEEEeC---CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 24 ITCMSAGNDVIVLGTSK-GWLIRHDF---GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 24 i~~~~v~nn~l~~~~~~-g~l~ridl---~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
+..+.+.++-=.+|... -.|-.+|+ +|..+..|+.|.+ -|.-+-+...|+.+.-.++ ||.+-.+...+
T Consensus 43 VNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k-----NVtaVgF~~dgrWMyTgse---Dgt~kIWdlR~ 114 (311)
T KOG0315|consen 43 VNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK-----NVTAVGFQCDGRWMYTGSE---DGTVKIWDLRS 114 (311)
T ss_pred eeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC-----ceEEEEEeecCeEEEecCC---CceEEEEeccC
Confidence 45555555544444433 34555588 5666788888843 4788888888999998888 99998888776
Q ss_pred CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccC
Q 001978 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLS 179 (987)
Q Consensus 100 ~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~ 179 (987)
.....+-+ ..-.|.+|..++.+ ++.+.|+++|.|-.-.+... ....++ .|+...+|+++.+..
T Consensus 115 ~~~qR~~~-~~spVn~vvlhpnQ------teLis~dqsg~irvWDl~~~----~c~~~l--iPe~~~~i~sl~v~~---- 177 (311)
T KOG0315|consen 115 LSCQRNYQ-HNSPVNTVVLHPNQ------TELISGDQSGNIRVWDLGEN----SCTHEL--IPEDDTSIQSLTVMP---- 177 (311)
T ss_pred cccchhcc-CCCCcceEEecCCc------ceEEeecCCCcEEEEEccCC----cccccc--CCCCCcceeeEEEcC----
Confidence 65444333 34799999999544 38999999999988766543 112222 454446788888752
Q ss_pred CCceEEEEEECCCeEEEEe
Q 001978 180 NGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 180 ~~~~~~i~ast~~rly~f~ 198 (987)
+...++-|++..+.|.|.
T Consensus 178 -dgsml~a~nnkG~cyvW~ 195 (311)
T KOG0315|consen 178 -DGSMLAAANNKGNCYVWR 195 (311)
T ss_pred -CCcEEEEecCCccEEEEE
Confidence 235666667788999995
No 66
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.33 E-value=0.9 Score=51.40 Aligned_cols=155 Identities=17% Similarity=0.163 Sum_probs=99.0
Q ss_pred CCccCcceehhHHHHH------hhcCCCceeEEEEeCC-EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEe
Q 001978 1 MDLMRQVFQVDVLERY------AAKGRGVITCMSAGND-VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFV 73 (987)
Q Consensus 1 ~~~~~~~f~~~~~~~~------~~~~~~~i~~~~v~nn-~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~l 73 (987)
||..-.||.||-=... +.++|-.-.+++-.+. .+|.+.+...+|.+||...++..+..|.... ...+++.-+
T Consensus 233 ~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e-~~~~e~FeV 311 (514)
T KOG2055|consen 233 LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE-EKSMERFEV 311 (514)
T ss_pred CCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcc-cchhheeEe
Confidence 3455566766532211 2233333345555555 7888889999999999555566666554322 346777778
Q ss_pred CCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccc
Q 001978 74 DPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREK 153 (987)
Q Consensus 74 Dp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~ 153 (987)
.|.|..+++.-+ +|..+-+|..+...-.--|+-| .|+.++|. + ++..+++-+..|.||...+..+
T Consensus 312 Shd~~fia~~G~---~G~I~lLhakT~eli~s~KieG-~v~~~~fs-S-----dsk~l~~~~~~GeV~v~nl~~~----- 376 (514)
T KOG2055|consen 312 SHDSNFIAIAGN---NGHIHLLHAKTKELITSFKIEG-VVSDFTFS-S-----DSKELLASGGTGEVYVWNLRQN----- 376 (514)
T ss_pred cCCCCeEEEccc---CceEEeehhhhhhhhheeeecc-EEeeEEEe-c-----CCcEEEEEcCCceEEEEecCCc-----
Confidence 999998888777 7888778776643222223334 89999998 1 2357888888999999988764
Q ss_pred eeeeeeeeCCCCCceeeEEEE
Q 001978 154 YIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 154 ~~k~v~~l~~~~~~I~gi~~~ 174 (987)
.+-..+.-. +.|.|..+.
T Consensus 377 ~~~~rf~D~---G~v~gts~~ 394 (514)
T KOG2055|consen 377 SCLHRFVDD---GSVHGTSLC 394 (514)
T ss_pred ceEEEEeec---Cccceeeee
Confidence 222223332 567777664
No 67
>PTZ00420 coronin; Provisional
Probab=94.29 E-value=4.8 Score=48.74 Aligned_cols=116 Identities=8% Similarity=0.007 Sum_probs=74.5
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCC-ceeeEcCCC--CCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGD-SYDIDLSAG--RPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 21 ~~~i~~~~v~n---n~l~~~~~~g~l~ridl-~~~~-~~~~~l~~~--~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
.+.|.+++.+. ++|+-|..+|+|..||+ .... +..+.-|.. .+-...|..+-.+|.|..+++++. .+|...
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS--~DgtIr 151 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG--FDSFVN 151 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe--CCCeEE
Confidence 35699999984 58899999999999999 4322 211100000 111367999999999998776532 168887
Q ss_pred EEecCCCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEec
Q 001978 94 YTHAKWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (987)
Q Consensus 94 Y~~~~~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (987)
.+.....+. ..+. .+..|.|++|++. ..-++.|+.+|.|....+.
T Consensus 152 IWDl~tg~~~~~i~--~~~~V~Slswspd------G~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 152 IWDIENEKRAFQIN--MPKKLSSLKWNIK------GNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred EEECCCCcEEEEEe--cCCcEEEEEECCC------CCEEEEEecCCEEEEEECC
Confidence 887655432 2232 2457999999942 1134446678887776554
No 68
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.27 E-value=1.4 Score=52.47 Aligned_cols=210 Identities=18% Similarity=0.231 Sum_probs=111.6
Q ss_pred hHHHHHHchhhHHHHHHhcCC--chhHh------------------HHHHHHHHHHHhcCCHHHHHHHHHhhc-C-----
Q 001978 366 DMWKVYLDMKEYAAALANCRD--PLQRD------------------QVYLVQAEAAFATKDFHRAASFYAKIN-Y----- 419 (987)
Q Consensus 366 ~~W~~ll~~~~fe~Al~~~~~--~~~~~------------------~V~~~~~~~l~~~g~y~~Aa~~~~~~~-~----- 419 (987)
...+.|.+.+.|..||.+|++ |.+.. .-...+|.+.-+.|+|..|...|.+.. +
T Consensus 1110 i~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gargvd~fvaqak~weq~gd~rkav~~~lkinrdst~nd 1189 (1636)
T KOG3616|consen 1110 IALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDND 1189 (1636)
T ss_pred hHHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCcH
Confidence 445668889999999999996 43322 225578888999999999999999885 1
Q ss_pred ---CCChH---HHHHHhcCcCh-HHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHH
Q 001978 420 ---ILSFE---EITLKFISVSE-QDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQ 492 (987)
Q Consensus 420 ---~~~~E---~v~lkFl~~~~-~~~L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~ 492 (987)
...|| +...||+-.++ .+.+-.-++. |.....+... ..++ .+..+-...|+.+-.. ++-.
T Consensus 1190 ~l~e~~~~kaadl~ikfl~~d~nme~i~aa~~a-l~~~~~~e~a-ael~--l~f~~~keaida~~~~---------eewa 1256 (1636)
T KOG3616|consen 1190 ALAEHCTEKAADLSIKFLMGDENMEVIGAAGGA-LDEAGCHEAA-AELL--LLFDLSKEAIDAFCEA---------EEWA 1256 (1636)
T ss_pred HHHHHHHHHHHhhhhhhcCCccchhhHHhcchh-hhcccccHHH-HHHH--HHhhhHHHHHHHHHhH---------HHHH
Confidence 12344 35566664433 2222222222 1112222211 1111 0111111123333110 0000
Q ss_pred HHHHHHHHHHhhccccCCHHHHH-HHHHHcCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCCc---hhhHH
Q 001978 493 SIMREFRAFLSDCKDVLDEATTM-KLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVP---IDLQY 568 (987)
Q Consensus 493 ~~~~~l~~fl~~~~~~ld~~tv~-~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~~---~~li~ 568 (987)
+.+.--+.+.-++.+.+| ..| +.|.+.|+.++++.. |--..+.+|+.+++|++|++.-.+++-. ...+-
T Consensus 1257 kakqvake~~p~~~~~id--k~yke~lknegkl~eli~v-----dviaaidl~ien~qwdk~idtak~qnykpil~kyva 1329 (1636)
T KOG3616|consen 1257 KAKQVAKELDPEMEDEID--KHYKEFLKNEGKLDELIDV-----DVIAAIDLMIENDQWDKAIDTAKKQNYKPILDKYVA 1329 (1636)
T ss_pred HHHHHHHHhCchhhHHHH--HHHHHHHhccCccccccch-----hHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHH
Confidence 111101111111111111 122 367778888887764 2334678999999999999999988642 12344
Q ss_pred hhHHHHHh-HChHHHHHHHHcCC-CCCCC
Q 001978 569 KFAPDLIM-LDAYETVESWMTTN-NLNPR 595 (987)
Q Consensus 569 k~~~~Ll~-~~p~~ti~~l~~~~-~ld~~ 595 (987)
.|+..|+. .+..++..++.+++ .-+|.
T Consensus 1330 ~yaa~li~~~d~aq~lal~~q~ga~anpa 1358 (1636)
T KOG3616|consen 1330 LYAAHLIHEGDLAQALALLEQHGAPANPA 1358 (1636)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhCCCCCcc
Confidence 56777774 45556677777764 44554
No 69
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.26 E-value=0.19 Score=55.85 Aligned_cols=123 Identities=17% Similarity=0.199 Sum_probs=75.9
Q ss_pred ceehhHHHHH-hhcCCCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEE
Q 001978 7 VFQVDVLERY-AAKGRGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIA 82 (987)
Q Consensus 7 ~f~~~~~~~~-~~~~~~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli 82 (987)
+|..|++.-. .-.....|++++.+++ ...+-+.+..+..||+ .+-.+.++.=++. +.-.|+.-|=- |.--+|
T Consensus 380 l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq--~~fiIrSCFgg--~~~~fi 455 (519)
T KOG0293|consen 380 LYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ--GHFIIRSCFGG--GNDKFI 455 (519)
T ss_pred eechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc--cceEEEeccCC--CCcceE
Confidence 4455443332 3334456999999876 5567788999999999 6555666654432 22345555542 222344
Q ss_pred EeecCCCccEEEEecCCCCceeccCCCCc--eEEEEeecCCCCCCCCcceEEEEcCCCcEE
Q 001978 83 TIVGSGGAETFYTHAKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLH 141 (987)
Q Consensus 83 ~~~~~~~g~~~Y~~~~~~k~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiGt~~G~i~ 141 (987)
.+.| -++.+|-+|..+.| +|..|.|| .|.||+|||.. . .-+-=|+.+|.|=
T Consensus 456 aSGS-ED~kvyIWhr~sgk--ll~~LsGHs~~vNcVswNP~~-p----~m~ASasDDgtIR 508 (519)
T KOG0293|consen 456 ASGS-EDSKVYIWHRISGK--LLAVLSGHSKTVNCVSWNPAD-P----EMFASASDDGTIR 508 (519)
T ss_pred EecC-CCceEEEEEccCCc--eeEeecCCcceeeEEecCCCC-H----HHhhccCCCCeEE
Confidence 4332 28999999998875 44455664 78999999432 2 2344456677553
No 70
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=94.18 E-value=1.9 Score=52.76 Aligned_cols=151 Identities=11% Similarity=0.179 Sum_probs=98.5
Q ss_pred ceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 23 VITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 23 ~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
.|.+++|+.+ +++.|-..=.|-.++. +.++.....-+ +++|.++-+||+|..|.+++- +|.++.+..+.
T Consensus 98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-----~apVl~l~~~p~~~fLAvss~---dG~v~iw~~~~ 169 (933)
T KOG1274|consen 98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-----DAPVLQLSYDPKGNFLAVSSC---DGKVQIWDLQD 169 (933)
T ss_pred cceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-----CCceeeeeEcCCCCEEEEEec---CceEEEEEccc
Confidence 4677777766 9999998888888888 55544333222 689999999999999999988 99999998765
Q ss_pred CCc-eeccCC------C-CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCC--CCCcee
Q 001978 100 SKP-RVLSKL------K-GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE--LPEAFM 169 (987)
Q Consensus 100 ~k~-k~L~kl------k-g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~--~~~~I~ 169 (987)
... +.|.++ - ...+.-+||.|. .|.+++-..++.|-.+..++ |-..|.|.+ ....++
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk------~g~la~~~~d~~Vkvy~r~~-------we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPK------GGTLAVPPVDNTVKVYSRKG-------WELQFKLRDKLSSSKFS 236 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCC------CCeEEeeccCCeEEEEccCC-------ceeheeecccccccceE
Confidence 432 112211 1 235778999943 46899888888777776543 222334432 123378
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 170 GLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
.+.|.. + ..|+.-.+....+.-|.-
T Consensus 237 ~~~wsP----n-G~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 237 DLQWSP----N-GKYIAASTLDGQILVWNV 261 (933)
T ss_pred EEEEcC----C-CcEEeeeccCCcEEEEec
Confidence 888863 2 245444444555655643
No 71
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=94.06 E-value=0.016 Score=43.64 Aligned_cols=21 Identities=38% Similarity=1.002 Sum_probs=18.1
Q ss_pred CEEEEcCCChhHHHhHHHHHh
Q 001978 864 PFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 864 ~fvvFpCgH~fH~~CL~~~~~ 884 (987)
+..+.+|||.|+..|+.+.+.
T Consensus 11 ~~~~~~C~H~fC~~C~~~~~~ 31 (41)
T PF00097_consen 11 PVILLPCGHSFCRDCLRKWLE 31 (41)
T ss_dssp EEEETTTSEEEEHHHHHHHHH
T ss_pred CCEEecCCCcchHHHHHHHHH
Confidence 556889999999999998864
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.99 E-value=15 Score=42.34 Aligned_cols=161 Identities=11% Similarity=0.104 Sum_probs=103.4
Q ss_pred HHHHhhcCCCceeEEEEe--CCEEEEEecCCeEEEEeCCC-CCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC
Q 001978 13 LERYAAKGRGVITCMSAG--NDVIVLGTSKGWLIRHDFGA-GDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG 89 (987)
Q Consensus 13 ~~~~~~~~~~~i~~~~v~--nn~l~~~~~~g~l~ridl~~-~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~ 89 (987)
+-+.++++.+-+.++.+- +..++.|-.+|.|-.+|..+ .-...+.-+ ..+|+-++..|.+..++++.. ++
T Consensus 60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah-----~apv~~~~f~~~d~t~l~s~s--Dd 132 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAH-----QAPVHVTKFSPQDNTMLVSGS--DD 132 (487)
T ss_pred hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhc-----cCceeEEEecccCCeEEEecC--CC
Confidence 445688899999999998 78999999999999999733 112222222 478999999998776666544 26
Q ss_pred ccEEEEecCCCCceeccCCCCc--eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCc
Q 001978 90 AETFYTHAKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEA 167 (987)
Q Consensus 90 g~~~Y~~~~~~k~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~ 167 (987)
+..-|+..+..-+ ...+.|+ -|+|.+|.+.+ . .-++-|+-||.|=...+-... ..+++++- ..|
T Consensus 133 ~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~-~----hivvtGsYDg~vrl~DtR~~~------~~v~elnh-g~p 198 (487)
T KOG0310|consen 133 KVVKYWDLSTAYV--QAELSGHTDYVRCGDISPAN-D----HIVVTGSYDGKVRLWDTRSLT------SRVVELNH-GCP 198 (487)
T ss_pred ceEEEEEcCCcEE--EEEecCCcceeEeeccccCC-C----eEEEecCCCceEEEEEeccCC------ceeEEecC-CCc
Confidence 6667887655433 2234454 79999999432 1 135568889987665543220 23456653 257
Q ss_pred eeeEEEEeeccCCCceEEEEEEC-CCeEEEEec
Q 001978 168 FMGLQMETASLSNGTRYYVMAVT-PTRLYSFTG 199 (987)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast-~~rly~f~g 199 (987)
|..+.+-. + ...|+-|.. ..|+.+..+
T Consensus 199 Ve~vl~lp----s-gs~iasAgGn~vkVWDl~~ 226 (487)
T KOG0310|consen 199 VESVLALP----S-GSLIASAGGNSVKVWDLTT 226 (487)
T ss_pred eeeEEEcC----C-CCEEEEcCCCeEEEEEecC
Confidence 99888752 1 134555444 346666653
No 73
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.95 E-value=0.5 Score=58.89 Aligned_cols=187 Identities=13% Similarity=0.176 Sum_probs=106.4
Q ss_pred HHHHHhcCcChHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHH-HHHHHHHHHh
Q 001978 425 EITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQS-IMREFRAFLS 503 (987)
Q Consensus 425 ~v~lkFl~~~~~~~L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~-~~~~l~~fl~ 503 (987)
+.++.|++..+...+++||+.....-+ ..-+.+-+-++.+|..+++.....+.. .++..+. ..+++..|+.
T Consensus 596 ~~Vl~~l~~~~~~l~I~YLE~li~~~~----~~~~~lht~ll~ly~e~v~~~~~~~~k----g~e~~E~~~rekl~~~l~ 667 (877)
T KOG2063|consen 596 DDVLNYLKSKEPKLLIPYLEHLISDNR----LTSTLLHTVLLKLYLEKVLEQASTDGK----GEEAPETTVREKLLDFLE 667 (877)
T ss_pred HHHHHHhhhhCcchhHHHHHHHhHhcc----ccchHHHHHHHHHHHHHHhhccCchhc----cccchhhhHHHHHHHHhh
Confidence 466677888888899999996543222 223566678889999887732100100 0111111 3666777766
Q ss_pred hccccCCHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHHHHHh-cccHHHHHHHHhCCCC----chhhHHhhHHHHHhH-
Q 001978 504 DCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQ-QGEAKKALQMLRKPAV----PIDLQYKFAPDLIML- 577 (987)
Q Consensus 504 ~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~-~~~~~~AL~~l~~~~~----~~~li~k~~~~Ll~~- 577 (987)
.. +..++..+.+-+...+..+++.-+-.+.+.++..+..|.. .++|+.|..+...+.. ..+.+......++..
T Consensus 668 ~s-~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~~ 746 (877)
T KOG2063|consen 668 SS-DLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNPI 746 (877)
T ss_pred hh-cccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcch
Confidence 43 2346666655666666666665555567788888888886 4788888888765432 123333333333322
Q ss_pred -----ChHHHHHHHHcC-CCCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHHhh
Q 001978 578 -----DAYETVESWMTT-NNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHR 627 (987)
Q Consensus 578 -----~p~~ti~~l~~~-~~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~ 627 (987)
.|....+++-++ .++|+..+++.|-..- .-+....|+..++.+
T Consensus 747 ~d~~~~~~~il~~l~~h~~r~d~~~~~~~Lp~~~-------sl~~~~~~l~~~Lr~ 795 (877)
T KOG2063|consen 747 HDYKSGPLYILNFLQKHADRLDLAQVLKLLPDDI-------SLKDLCSFLSKLLRK 795 (877)
T ss_pred hhccccchhhhhHHHhhhhhcCHHHHHHhCCccC-------cHhHHHHHHHHHHHH
Confidence 333334444444 3677776655544322 124466677666654
No 74
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=93.90 E-value=32 Score=45.98 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=38.2
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+...+.. ..-..++...|..++..|+|++|...|.+..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 477889999999887531 1224677788999999999999999988765
No 75
>PTZ00421 coronin; Provisional
Probab=93.89 E-value=4.7 Score=48.23 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=74.8
Q ss_pred CceeEEEEeC---CEEEEEecCCeEEEEeC-CCCCcee----e-EcCCCCCCccceeEEEeCCCCCeEEEE-eecCCCcc
Q 001978 22 GVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYD----I-DLSAGRPGEQSIHKVFVDPGGSHCIAT-IVGSGGAE 91 (987)
Q Consensus 22 ~~i~~~~v~n---n~l~~~~~~g~l~ridl-~~~~~~~----~-~l~~~~~~~~~i~~i~lDp~G~hlli~-~~~~~~g~ 91 (987)
+.|++++.+. +.|+.|..+|+|..||+ .+..... + .+. +-..+|..+-..|.+..++++ +. +|.
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~---gH~~~V~~l~f~P~~~~iLaSgs~---Dgt 149 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ---GHTKKVGIVSFHPSAMNVLASAGA---DMV 149 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec---CCCCcEEEEEeCcCCCCEEEEEeC---CCE
Confidence 5699999874 68999999999999999 3321111 1 111 114678999999997654444 44 788
Q ss_pred EEEEecCCCCce-eccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEec
Q 001978 92 TFYTHAKWSKPR-VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (987)
Q Consensus 92 ~~Y~~~~~~k~k-~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (987)
...++....+.. .+. .....|.+++|++. ...++.|+.+|.|....+.
T Consensus 150 VrIWDl~tg~~~~~l~-~h~~~V~sla~spd------G~lLatgs~Dg~IrIwD~r 198 (493)
T PTZ00421 150 VNVWDVERGKAVEVIK-CHSDQITSLEWNLD------GSLLCTTSKDKKLNIIDPR 198 (493)
T ss_pred EEEEECCCCeEEEEEc-CCCCceEEEEEECC------CCEEEEecCCCEEEEEECC
Confidence 888876554322 222 12347999999942 2257788999988876654
No 76
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=93.85 E-value=0.72 Score=51.40 Aligned_cols=172 Identities=14% Similarity=0.189 Sum_probs=112.5
Q ss_pred ceehhHHHHHhhcCCCceeEEEEeCC--EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEe
Q 001978 7 VFQVDVLERYAAKGRGVITCMSAGND--VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATI 84 (987)
Q Consensus 7 ~f~~~~~~~~~~~~~~~i~~~~v~nn--~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~ 84 (987)
-|.-|++.+.-- .+|++|.++.| +|+=|-..|.|-.|+++-+.|..++-+. .+.|+.+-..|+-.-.+-|+
T Consensus 127 ~fnFEtilQaHD---s~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh----~eaIRdlafSpnDskF~t~S 199 (464)
T KOG0284|consen 127 SFNFETILQAHD---SPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHH----AEAIRDLAFSPNDSKFLTCS 199 (464)
T ss_pred eeeHHHHhhhhc---ccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhh----hhhhheeccCCCCceeEEec
Confidence 355566654422 45899988877 5555667788888899777777776653 47899999999988888888
Q ss_pred ecCCCccEEEEecCCCC-ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCC
Q 001978 85 VGSGGAETFYTHAKWSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE 163 (987)
Q Consensus 85 ~~~~~g~~~Y~~~~~~k-~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~ 163 (987)
+ +|..--++....| .++|. -.|.+|+||+|.+. .+-|..|+++. ...-++++.+ ..|..+..
T Consensus 200 d---Dg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~------kgLiasgskDn--lVKlWDprSg-----~cl~tlh~ 262 (464)
T KOG0284|consen 200 D---DGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPT------KGLIASGSKDN--LVKLWDPRSG-----SCLATLHG 262 (464)
T ss_pred C---CCeEEEEeccCCchhheec-cCCCCcceeccCCc------cceeEEccCCc--eeEeecCCCc-----chhhhhhh
Confidence 8 8988888776654 45664 47889999999953 34788888887 2223444322 22333332
Q ss_pred CCCceeeEEEEeeccCCCceEEEEEECCCeEEEEecCCchHHHHh
Q 001978 164 LPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTGFGSLDTVFA 208 (987)
Q Consensus 164 ~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g~~~l~~lf~ 208 (987)
-...|+++.|.. + ..+++-++-++.+--|+-+ .+..||.
T Consensus 263 HKntVl~~~f~~----n-~N~Llt~skD~~~kv~DiR-~mkEl~~ 301 (464)
T KOG0284|consen 263 HKNTVLAVKFNP----N-GNWLLTGSKDQSCKVFDIR-TMKELFT 301 (464)
T ss_pred ccceEEEEEEcC----C-CCeeEEccCCceEEEEehh-HhHHHHH
Confidence 124589999863 2 2577766654433333322 3555554
No 77
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=93.67 E-value=0.095 Score=48.79 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=55.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh
Q 001978 637 NLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ 709 (987)
Q Consensus 637 n~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~ 709 (987)
..++..|+... +..+.+||+.. ...|++.+-+...+++++.+.+.+|..-|+|++|+++..+
T Consensus 3 TaLlk~Yl~~~-~~~l~~llr~~----------N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~ 64 (108)
T PF10366_consen 3 TALLKCYLETN-PSLLGPLLRLP----------NYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKK 64 (108)
T ss_pred HHHHHHHHHhC-HHHHHHHHccC----------CcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHH
Confidence 45777888774 68899999976 5799999999999999999999999999999999999886
No 78
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=0.23 Score=55.21 Aligned_cols=34 Identities=26% Similarity=0.752 Sum_probs=27.0
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
.|++|-..-.. . +.+.+-||+|.||..|...-+.
T Consensus 231 ~CaIClEdY~~-----G-----------dklRiLPC~H~FH~~CIDpWL~ 264 (348)
T KOG4628|consen 231 TCAICLEDYEK-----G-----------DKLRILPCSHKFHVNCIDPWLT 264 (348)
T ss_pred eEEEeeccccc-----C-----------CeeeEecCCCchhhccchhhHh
Confidence 89999765443 1 2788999999999999987653
No 79
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.44 E-value=2.5 Score=50.08 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=97.5
Q ss_pred CceeEEEEeCCEE--EEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 22 GVITCMSAGNDVI--VLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 22 ~~i~~~~v~nn~l--~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
..|+|+.++++-- +-+..++.+..++. .........+ .+-...|..+-..|.|..++-++. ++...-+..
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l---~~h~~~v~~~~fs~d~~~l~s~s~---D~tiriwd~- 232 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL---SGHTRGVSDVAFSPDGSYLLSGSD---DKTLRIWDL- 232 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc---cccccceeeeEECCCCcEEEEecC---CceEEEeec-
Confidence 4688888887744 44456677777777 2221111112 122468999999999996666666 666655555
Q ss_pred CCCceeccCCCCc--eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEee
Q 001978 99 WSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (987)
Q Consensus 99 ~~k~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~ 176 (987)
....+.+..++|| .|.|++|++. + ..++-|+.+|.|..-.+..+ .+...+.... ++|+++.+.
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~-----g-~~i~Sgs~D~tvriWd~~~~-----~~~~~l~~hs--~~is~~~f~-- 297 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPD-----G-NLLVSGSDDGTVRIWDVRTG-----ECVRKLKGHS--DGISGLAFS-- 297 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCC-----C-CEEEEecCCCcEEEEeccCC-----eEEEeeeccC--CceEEEEEC--
Confidence 2222344445665 8999999943 1 37999999999998887653 1344444443 579999885
Q ss_pred ccCCCceEEEEEECCCeEEEEe
Q 001978 177 SLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~ 198 (987)
.+.+.++-++....+.-|+
T Consensus 298 ---~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 298 ---PDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred ---CCCCEEEEcCCCccEEEEE
Confidence 3345666666577777675
No 80
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.053 Score=57.53 Aligned_cols=37 Identities=24% Similarity=0.728 Sum_probs=29.8
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
.+-.|++|=....-. . ..+|-||.|.||..|+.+-+.
T Consensus 322 ~GveCaICms~fiK~----d------------~~~vlPC~H~FH~~Cv~kW~~ 358 (374)
T COG5540 322 KGVECAICMSNFIKN----D------------RLRVLPCDHRFHVGCVDKWLL 358 (374)
T ss_pred CCceEEEEhhhhccc----c------------eEEEeccCceechhHHHHHHh
Confidence 346799998776431 2 799999999999999998874
No 81
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=93.18 E-value=4.7 Score=42.92 Aligned_cols=152 Identities=13% Similarity=0.205 Sum_probs=94.2
Q ss_pred CceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe--
Q 001978 22 GVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH-- 96 (987)
Q Consensus 22 ~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~-- 96 (987)
++|-|++|... .|.-|....++..||. .+.+...++.+ .+|..+-+++.|..+++||+.. -|....++
T Consensus 53 GavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~------~~Vk~~~F~~~gn~~l~~tD~~-mg~~~~v~~f 125 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN------SPVKRVDFSFGGNLILASTDKQ-MGYTCFVSVF 125 (327)
T ss_pred ceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC------CeeEEEeeccCCcEEEEEehhh-cCcceEEEEE
Confidence 56778877665 5566667778888888 66655555554 6789999999999999999821 22222222
Q ss_pred -cC-------CCC-ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCc
Q 001978 97 -AK-------WSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEA 167 (987)
Q Consensus 97 -~~-------~~k-~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~ 167 (987)
.. +.. ...+.- ..-.|+++.|.+- ...|+-|.++|.|-.+.+..+ .++++. -+..+ ..
T Consensus 126 di~~~~~~~~s~ep~~kI~t-~~skit~a~Wg~l------~~~ii~Ghe~G~is~~da~~g---~~~v~s-~~~h~--~~ 192 (327)
T KOG0643|consen 126 DIRDDSSDIDSEEPYLKIPT-PDSKITSALWGPL------GETIIAGHEDGSISIYDARTG---KELVDS-DEEHS--SK 192 (327)
T ss_pred EccCChhhhcccCceEEecC-Cccceeeeeeccc------CCEEEEecCCCcEEEEEcccC---ceeeec-hhhhc--cc
Confidence 11 111 222221 3468999999932 236788899999988877554 111111 12222 45
Q ss_pred eeeEEEEeeccCCCceEEEEEEC--CCeEEEEe
Q 001978 168 FMGLQMETASLSNGTRYYVMAVT--PTRLYSFT 198 (987)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast--~~rly~f~ 198 (987)
|+.+++.+ +..++|-+|+ ..+|..+.
T Consensus 193 Ind~q~s~-----d~T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 193 INDLQFSR-----DRTYFITGSKDTTAKLVDVR 220 (327)
T ss_pred cccccccC-----CcceEEecccCccceeeecc
Confidence 88888863 3457776665 34555543
No 82
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.12 E-value=0.83 Score=51.73 Aligned_cols=131 Identities=17% Similarity=0.192 Sum_probs=91.6
Q ss_pred ceeEEEEeCC----EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 23 VITCMSAGND----VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 23 ~i~~~~v~nn----~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
+||.|.+.++ .++-+-.+.++-.||+ ...-.-.+-+| ..|+-+-+||.++++.|-+. .|..|-.+.
T Consensus 176 sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp------~si~av~lDpae~~~yiGt~---~G~I~~~~~ 246 (476)
T KOG0646|consen 176 SITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP------SSIKAVALDPAERVVYIGTE---EGKIFQNLL 246 (476)
T ss_pred eeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC------CcceeEEEcccccEEEecCC---cceEEeeeh
Confidence 4899999887 5677777888999999 66556667666 57899999999999999998 787764432
Q ss_pred -CC----------------CCceeccCCCC-ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeee
Q 001978 98 -KW----------------SKPRVLSKLKG-LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF 159 (987)
Q Consensus 98 -~~----------------~k~k~L~klkg-~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~ 159 (987)
++ .+.+.+.--+| ..|+|.|.+-+ .+ -.+.|..+|.+..-.+.++ +.+|++.
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D----gt--lLlSGd~dg~VcvWdi~S~----Q~iRtl~ 316 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD----GT--LLLSGDEDGKVCVWDIYSK----QCIRTLQ 316 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEecC----cc--EEEeeCCCCCEEEEecchH----HHHHHHh
Confidence 11 12333332222 48999999822 11 4667899999988777553 4556654
Q ss_pred eeCCCCCceeeEEEEe
Q 001978 160 ELNELPEAFMGLQMET 175 (987)
Q Consensus 160 ~l~~~~~~I~gi~~~~ 175 (987)
+.. +||+.+.+..
T Consensus 317 ~~k---gpVtnL~i~~ 329 (476)
T KOG0646|consen 317 TSK---GPVTNLQINP 329 (476)
T ss_pred hhc---cccceeEeec
Confidence 333 7899998853
No 83
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=93.04 E-value=5.5 Score=45.73 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=32.5
Q ss_pred HHHchhhHHHHHHhcCC----c----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD----P----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~----~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+..+|+|++|+.+.+. + ..+..++...|..++..|+|++|...|.+..
T Consensus 78 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l 134 (389)
T PRK11788 78 LFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV 134 (389)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46677788888776531 1 1123456667777888888888887777764
No 84
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=92.88 E-value=0.083 Score=40.49 Aligned_cols=33 Identities=30% Similarity=0.613 Sum_probs=26.5
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
.|.+|.++.... + ++++.+|||.|...|+....
T Consensus 1 ~C~~C~~~~~~~----~------------~~~l~~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 1 HCNICFEKYSEE----R------------RPRLTSCGHIFCEKCLKKLK 33 (44)
T ss_pred CCcCcCccccCC----C------------CeEEcccCCHHHHHHHHhhc
Confidence 488999888220 3 89999999999999998654
No 85
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=92.80 E-value=0.3 Score=53.34 Aligned_cols=96 Identities=13% Similarity=0.242 Sum_probs=50.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhhcccccccccc
Q 001978 776 PDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDCGVCRRKILVAGRDYRMARG 855 (987)
Q Consensus 776 p~~~~I~~~Kd~L~~~L~~y~~~i~~l~~~m~~~~~~~~~l~~~i~~~~~r~~~i~~~~~C~~C~k~L~~~~~~~~~~~~ 855 (987)
|--++|--+|+.....+.-|+.-.+..+ ..+..+++..-+......- --..+..|.+|-.-+..++.+ .
T Consensus 236 ~~r~Pi~l~r~~~t~~~AL~~~i~~~~~-----~~r~~kdl~~~~~t~t~eq-l~n~D~~C~ICmde~~h~~~~-----~ 304 (491)
T COG5243 236 YVRVPIYLIRQMYTCFYALFRRIREHAR-----FRRATKDLNAMYPTATEEQ-LTNSDRTCTICMDEMFHPDHE-----P 304 (491)
T ss_pred chhchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhHHHhhcchhhhhh-hcCCCCeEEEecccccCCCCc-----c
Confidence 3356778888887766665643222222 2222222222221111110 123467899999887764421 1
Q ss_pred cCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 856 YASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 856 ~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
.+.+ ....=-..||||.+|-.||.+-+
T Consensus 305 ~~~~-~~~~pKrLpCGHilHl~CLknW~ 331 (491)
T COG5243 305 LPRG-LDMTPKRLPCGHILHLHCLKNWL 331 (491)
T ss_pred Cccc-ccCCcccccccceeeHHHHHHHH
Confidence 1111 11122346999999999999875
No 86
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=92.79 E-value=6 Score=47.07 Aligned_cols=158 Identities=11% Similarity=0.099 Sum_probs=99.9
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
|..|+|||.++ |.|+++-.+|.|=.|++.++=..+-.++. +.+..|..+---+.|+ |+.+.- +|...-++..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g--~~drsIE~L~W~e~~R-LFS~g~---sg~i~EwDl~ 98 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG--PEDRSIESLAWAEGGR-LFSSGL---SGSITEWDLH 98 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec--CCCCceeeEEEccCCe-EEeecC---CceEEEEecc
Confidence 34699999875 58899999999999999444444444443 2356777776666665 555444 6888777765
Q ss_pred CCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeecc
Q 001978 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (987)
.-|.+.--.--|-.|=|+|-++.+ ..+.||+.+|++|...+.++. . ..+.+ |+-..+.|.+|.|..
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~------~~l~IgcddGvl~~~s~~p~~-I--~~~r~--l~rq~sRvLslsw~~--- 164 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN------TILAIGCDDGVLYDFSIGPDK-I--TYKRS--LMRQKSRVLSLSWNP--- 164 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc------ceEEeecCCceEEEEecCCce-E--EEEee--cccccceEEEEEecC---
Confidence 544333222356788899988432 368999999999998887651 0 12222 222236688888863
Q ss_pred CCCceEEEEEECCCeEEEEecC
Q 001978 179 SNGTRYYVMAVTPTRLYSFTGF 200 (987)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~g~ 200 (987)
...-++..+.+.++--|.+.
T Consensus 165 --~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 165 --TGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred --CccEEEecccCceEEEEEcC
Confidence 11224444445656667653
No 87
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.65 E-value=2.7 Score=45.61 Aligned_cols=91 Identities=18% Similarity=0.148 Sum_probs=68.3
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCC--eEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGS--HCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~--hlli~~~~~~~g~~~Y~~~ 97 (987)
.++|+|+||+...++=|-.+-+|+.+|+ ...+...+--| .+.|+-+-.+|... |||.+++ ||...-+..
T Consensus 43 ~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~H-----agsitaL~F~~~~S~shLlS~sd---DG~i~iw~~ 114 (362)
T KOG0294|consen 43 AGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSH-----AGSITALKFYPPLSKSHLLSGSD---DGHIIIWRV 114 (362)
T ss_pred ccceeEEEecceeEeccCCCCcEEEEeccchhhhcceecc-----ccceEEEEecCCcchhheeeecC---CCcEEEEEc
Confidence 3579999999999999999999999999 55555544444 46888888887665 9999999 999987765
Q ss_pred C-CCCceeccCCCCceEEEEeecC
Q 001978 98 K-WSKPRVLSKLKGLVVNAVAWNR 120 (987)
Q Consensus 98 ~-~~k~k~L~klkg~~i~sVaw~~ 120 (987)
+ |.-++.+.--+| .|+-++-.|
T Consensus 115 ~~W~~~~slK~H~~-~Vt~lsiHP 137 (362)
T KOG0294|consen 115 GSWELLKSLKAHKG-QVTDLSIHP 137 (362)
T ss_pred CCeEEeeeeccccc-ccceeEecC
Confidence 3 322334433344 489999884
No 88
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=0.045 Score=57.12 Aligned_cols=43 Identities=30% Similarity=0.668 Sum_probs=31.1
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
.+..|++||+.+.- .. +..+.-+..+--.|+|+||..|..--.
T Consensus 223 ~d~vCaVCg~~~~~-----s~----~eegvienty~LsCnHvFHEfCIrGWc 265 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDV-----SV----DEEGVIENTYKLSCNHVFHEFCIRGWC 265 (328)
T ss_pred CcchhHhhcchhee-----ec----chhhhhhhheeeecccchHHHhhhhhe
Confidence 46789999999877 21 111222367788999999999998654
No 89
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.48 E-value=1.4 Score=55.53 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=28.3
Q ss_pred hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 388 LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 388 ~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..+..|+..||+||-+++.|++||-.|..+.
T Consensus 936 e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G 966 (1265)
T KOG1920|consen 936 EKQKVIYEAYADHLREELMSDEAALMYERCG 966 (1265)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHhc
Confidence 4567899999999999999999999999986
No 90
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=92.45 E-value=6 Score=44.08 Aligned_cols=155 Identities=10% Similarity=0.095 Sum_probs=98.5
Q ss_pred CceeEEEEeCC--EEEEEecCCeEEEEeCCCC-CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 22 GVITCMSAGND--VIVLGTSKGWLIRHDFGAG-DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 22 ~~i~~~~v~nn--~l~~~~~~g~l~ridl~~~-~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
++|-|++.+.. .|+-|-.+.++-.||+.-+ ....+.=+ ..=|..|--.|.|.++...+. +|+...++.+
T Consensus 116 e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH-----~~WVlcvawsPDgk~iASG~~---dg~I~lwdpk 187 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH-----KNWVLCVAWSPDGKKIASGSK---DGSIRLWDPK 187 (480)
T ss_pred CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCC-----ccEEEEEEECCCcchhhcccc---CCeEEEecCC
Confidence 45788888874 5555556667888899211 11112112 345677777999999888777 8998888844
Q ss_pred C--CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEee
Q 001978 99 W--SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (987)
Q Consensus 99 ~--~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~ 176 (987)
+ ...+.|.. ...-|+++||.|-.... ..+.+.-++++|.+..-.+..+ +.++.+.+-..|||.|.|-
T Consensus 188 tg~~~g~~l~g-H~K~It~Lawep~hl~p-~~r~las~skDg~vrIWd~~~~-------~~~~~lsgHT~~VTCvrwG-- 256 (480)
T KOG0271|consen 188 TGQQIGRALRG-HKKWITALAWEPLHLVP-PCRRLASSSKDGSVRIWDTKLG-------TCVRTLSGHTASVTCVRWG-- 256 (480)
T ss_pred CCCcccccccC-cccceeEEeecccccCC-CccceecccCCCCEEEEEccCc-------eEEEEeccCccceEEEEEc--
Confidence 3 34556653 22489999999655433 3345666678899887766554 3455565534679999994
Q ss_pred ccCCCceEEEEEECCCeEEEEec
Q 001978 177 SLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~g 199 (987)
..+++.-.|-+.++-.|..
T Consensus 257 ----G~gliySgS~DrtIkvw~a 275 (480)
T KOG0271|consen 257 ----GEGLIYSGSQDRTIKVWRA 275 (480)
T ss_pred ----CCceEEecCCCceEEEEEc
Confidence 2245554444555555543
No 91
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.40 E-value=0.55 Score=53.05 Aligned_cols=142 Identities=11% Similarity=0.137 Sum_probs=95.3
Q ss_pred eeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 001978 24 ITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (987)
Q Consensus 24 i~~~~v~--nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (987)
+-.+.|+ +++++++=.+|.|+.+-- ..+-+..+.++ +.|..+-.+..|.++++|.. +|++|.++...+
T Consensus 306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie------G~v~~~~fsSdsk~l~~~~~---~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE------GVVSDFTFSSDSKELLASGG---TGEVYVWNLRQN 376 (514)
T ss_pred hheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec------cEEeeEEEecCCcEEEEEcC---CceEEEEecCCc
Confidence 4455444 458888889999998866 55556777776 68888888899999999877 899999998776
Q ss_pred CceeccCCC---CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC--ccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 101 KPRVLSKLK---GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK--DKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 101 k~k~L~klk---g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~--~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
+ .+.++. +..-+++|-... ..-+-+|++.|.|-.+..+.- ++.-+-+|.+-+|- ..|++++|.
T Consensus 377 ~--~~~rf~D~G~v~gts~~~S~n------g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn- 444 (514)
T KOG2055|consen 377 S--CLHRFVDDGSVHGTSLCISLN------GSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFN- 444 (514)
T ss_pred c--eEEEEeecCccceeeeeecCC------CceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeC-
Confidence 4 333332 345566665421 126888999998776654322 11122344444444 458888885
Q ss_pred eccCCCceEEEEEEC
Q 001978 176 ASLSNGTRYYVMAVT 190 (987)
Q Consensus 176 ~~~~~~~~~~i~ast 190 (987)
.+.+.+.|||+
T Consensus 445 ----~d~qiLAiaS~ 455 (514)
T KOG2055|consen 445 ----HDAQILAIASR 455 (514)
T ss_pred ----cchhhhhhhhh
Confidence 34577888776
No 92
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=92.28 E-value=0.11 Score=55.09 Aligned_cols=54 Identities=28% Similarity=0.501 Sum_probs=40.6
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCCHHHHHHHHHHHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTNETQAEYILDLQKQL 902 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~~~~~~~i~~l~~~l 902 (987)
++..|.+|---+.. . ..|.+-+|-|.||..||.+++..+.. ..|..+.++++.+
T Consensus 114 p~gqCvICLygfa~-----~-----------~~ft~T~C~Hy~H~~ClaRyl~~~~~-~lrqe~q~~~~~~ 167 (368)
T KOG4445|consen 114 PNGQCVICLYGFAS-----S-----------PAFTVTACDHYMHFACLARYLTECLT-GLRQEIQDAQKER 167 (368)
T ss_pred CCCceEEEEEeecC-----C-----------CceeeehhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 56789999766665 3 15999999999999999999865443 4556677676654
No 93
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=92.21 E-value=0.14 Score=43.39 Aligned_cols=48 Identities=27% Similarity=0.580 Sum_probs=33.7
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
-+.|++|+-.+.+..++ ...++ .++..++++-=-|.|+||..|+.+-+
T Consensus 20 id~CaICRnhim~~C~e--Cq~~~-~~~~eC~v~wG~CnHaFH~HCI~rWL 67 (88)
T COG5194 20 IDVCAICRNHIMGTCPE--CQFGM-TPGDECPVVWGVCNHAFHDHCIYRWL 67 (88)
T ss_pred cchhhhhhccccCcCcc--cccCC-CCCCcceEEEEecchHHHHHHHHHHH
Confidence 37899999999885542 11111 23445577777899999999998765
No 94
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.04 E-value=8.7 Score=46.40 Aligned_cols=156 Identities=13% Similarity=0.175 Sum_probs=100.0
Q ss_pred HHhhcCCCceeEEEEeC--CEEEEEecCCeEEEEeCCCCC--ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCc
Q 001978 15 RYAAKGRGVITCMSAGN--DVIVLGTSKGWLIRHDFGAGD--SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGA 90 (987)
Q Consensus 15 ~~~~~~~~~i~~~~v~n--n~l~~~~~~g~l~ridl~~~~--~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g 90 (987)
+.+.+.+.+++|.+-+. ++|+.|.++|....+.+ |+- +....+ ++.+|..+-+..+|..+.+.+. .-|
T Consensus 259 ~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Lyel-P~f~lih~LSi-----s~~~I~t~~~N~tGDWiA~g~~--klg 330 (893)
T KOG0291|consen 259 HYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYEL-PDFNLIHSLSI-----SDQKILTVSFNSTGDWIAFGCS--KLG 330 (893)
T ss_pred eeecccccceeeeeccCCceEEEEEecCCeeEEEec-CCceEEEEeec-----ccceeeEEEecccCCEEEEcCC--ccc
Confidence 34444556778887765 58899999999999888 332 222222 3579999999999999888764 246
Q ss_pred cEEEEecCCCCceeccCCCCc--eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCce
Q 001978 91 ETFYTHAKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAF 168 (987)
Q Consensus 91 ~~~Y~~~~~~k~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I 168 (987)
+...+.-++.. ..| |..|| .|+|++..++ ..-|..|..+|.|=......+ .|-..|.=+ .+.|
T Consensus 331 QLlVweWqsEs-YVl-KQQgH~~~i~~l~YSpD------gq~iaTG~eDgKVKvWn~~Sg-----fC~vTFteH--ts~V 395 (893)
T KOG0291|consen 331 QLLVWEWQSES-YVL-KQQGHSDRITSLAYSPD------GQLIATGAEDGKVKVWNTQSG-----FCFVTFTEH--TSGV 395 (893)
T ss_pred eEEEEEeeccc-eee-eccccccceeeEEECCC------CcEEEeccCCCcEEEEeccCc-----eEEEEeccC--CCce
Confidence 66555544332 222 34554 7999999843 347888999998877665543 243334333 3569
Q ss_pred eeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 169 MGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 169 ~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
++++|..- .+.++-++-+.++-.|+
T Consensus 396 t~v~f~~~-----g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 396 TAVQFTAR-----GNVLLSSSLDGTVRAWD 420 (893)
T ss_pred EEEEEEec-----CCEEEEeecCCeEEeee
Confidence 99999752 13344333355555553
No 95
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=91.96 E-value=4.5 Score=46.15 Aligned_cols=151 Identities=12% Similarity=0.109 Sum_probs=109.7
Q ss_pred ceeEEEEe--CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 001978 23 VITCMSAG--NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (987)
Q Consensus 23 ~i~~~~v~--nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (987)
-|||++-+ .+.|+.|..+|.+-.|+..++.+..+-.+ .++|..+--.-+|.|++.... +|..--++...-
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~H-----kgPI~slKWnk~G~yilS~~v---D~ttilwd~~~g 308 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQH-----KGPIFSLKWNKKGTYILSGGV---DGTTILWDAHTG 308 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhcc-----CCceEEEEEcCCCCEEEeccC---CccEEEEeccCc
Confidence 38999999 77999999999999999977766656555 368999999999999998877 888877776555
Q ss_pred CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCC
Q 001978 101 KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (987)
Q Consensus 101 k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (987)
.+++.-.++.-+---|-|-.. .+|..-..+|.|+.+.++.. +-.+.+.- .. ++|.+|+|..
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~~-------~~F~ts~td~~i~V~kv~~~----~P~~t~~G-H~--g~V~alk~n~----- 369 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQSN-------DEFATSSTDGCIHVCKVGED----RPVKTFIG-HH--GEVNALKWNP----- 369 (524)
T ss_pred eEEEeeeeccCCccceEEecC-------ceEeecCCCceEEEEEecCC----Ccceeeec-cc--CceEEEEECC-----
Confidence 555544454444445788622 27999899999999999764 22344322 32 6799999963
Q ss_pred CceEEEEEECCCeEEEEecC
Q 001978 181 GTRYYVMAVTPTRLYSFTGF 200 (987)
Q Consensus 181 ~~~~~i~ast~~rly~f~g~ 200 (987)
....+.-+|.+..|--|.++
T Consensus 370 tg~LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 370 TGSLLASCSDDGTLKIWSMG 389 (524)
T ss_pred CCceEEEecCCCeeEeeecC
Confidence 11355555557777778754
No 96
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=0.32 Score=58.63 Aligned_cols=20 Identities=25% Similarity=0.655 Sum_probs=16.5
Q ss_pred CEEEEcCCChhHHHhHHHHH
Q 001978 864 PFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 864 ~fvvFpCgH~fH~~CL~~~~ 883 (987)
..|+-.|||+|-..|+...+
T Consensus 655 d~vI~kC~H~FC~~Cvq~r~ 674 (698)
T KOG0978|consen 655 DAVITKCGHVFCEECVQTRY 674 (698)
T ss_pred hHHHHhcchHHHHHHHHHHH
Confidence 45667899999999998665
No 97
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.80 E-value=49 Score=42.58 Aligned_cols=64 Identities=17% Similarity=0.085 Sum_probs=46.9
Q ss_pred HHhcCcceeeehhhhccccHHHHHHHHHh-cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhccc
Q 001978 681 CLKEKRMRACVHIYGMMSMHEEAVALALQ-VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQE 744 (987)
Q Consensus 681 c~~~~~~~~~v~L~~~~g~~~eAl~l~l~-~di~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~~~ 744 (987)
|.+...++.++..|.+.|+.++|+.-+.. +|...|...+.+...+.++-..+=..++.-+..+.
T Consensus 949 L~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcc
Confidence 45667889999999999999999999999 99999999886554333333333345555555543
No 98
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=91.72 E-value=3.3 Score=43.55 Aligned_cols=144 Identities=10% Similarity=0.108 Sum_probs=93.9
Q ss_pred EEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceecc
Q 001978 28 SAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLS 106 (987)
Q Consensus 28 ~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~ 106 (987)
+-+.+.+.=.+..++|-.||. ...+|+.++++ ..|+.+-+.+.|+.+-|+-- +.+-++...+.. +|+
T Consensus 152 c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~------s~VtSlEvs~dG~ilTia~g----ssV~Fwdaksf~--~lK 219 (334)
T KOG0278|consen 152 CHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN------SPVTSLEVSQDGRILTIAYG----SSVKFWDAKSFG--LLK 219 (334)
T ss_pred eccCceEEeeccCCceEEEEeccCcEEEEEecC------CCCcceeeccCCCEEEEecC----ceeEEecccccc--cee
Confidence 445566666688899999999 88889988887 46788889999986666543 555566654432 222
Q ss_pred CCC-CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec-----cCC
Q 001978 107 KLK-GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS-----LSN 180 (987)
Q Consensus 107 klk-g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~-----~~~ 180 (987)
..| -+.|+|....|. .+-++.|.+++.+|-+....+...+.|. .+-++||..+.+..-. ++.
T Consensus 220 s~k~P~nV~SASL~P~------k~~fVaGged~~~~kfDy~TgeEi~~~n------kgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 220 SYKMPCNVESASLHPK------KEFFVAGGEDFKVYKFDYNTGEEIGSYN------KGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred eccCccccccccccCC------CceEEecCcceEEEEEeccCCceeeecc------cCCCCceEEEEECCCCceeeccCC
Confidence 111 268888888743 2479999999999988776552222221 2225889999886311 122
Q ss_pred CceEEEEEECCCeEE
Q 001978 181 GTRYYVMAVTPTRLY 195 (987)
Q Consensus 181 ~~~~~i~ast~~rly 195 (987)
+....+|.+|+.+-|
T Consensus 288 DGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKTY 302 (334)
T ss_pred CceEEEEEecCCCch
Confidence 334566666666666
No 99
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=91.62 E-value=24 Score=38.58 Aligned_cols=165 Identities=11% Similarity=0.144 Sum_probs=100.1
Q ss_pred HHhhcCCCceeEEEEeCCEEEEE--ecCCeEEEEeC-CCCCceeeEcCCCCC----------------------------
Q 001978 15 RYAAKGRGVITCMSAGNDVIVLG--TSKGWLIRHDF-GAGDSYDIDLSAGRP---------------------------- 63 (987)
Q Consensus 15 ~~~~~~~~~i~~~~v~nn~l~~~--~~~g~l~ridl-~~~~~~~~~l~~~~~---------------------------- 63 (987)
+.|....+.|+++.-+.+=.++. .++.+|..+|. ++..+..|.-++...
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 34444567899999887744433 46668888898 777765544332200
Q ss_pred -----------CccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEE
Q 001978 64 -----------GEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEII 132 (987)
Q Consensus 64 -----------~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iL 132 (987)
-..+|+.|-+.|.+.-.+.++. |..+.+|..+.++...+-.+.+.+| +|+++... =|.
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~---D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GL------ifA 156 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSL---DKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGL------IFA 156 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEeccc---CCeEEeeEecCCCCceEEecCCCcc--eeECCCCc------EEE
Confidence 0367888888998876666666 8889999988877777666666555 57874311 344
Q ss_pred EEcCCCcEEEEEeccC-ccccceeeeeeeeCC-CCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 133 LGTDTGQLHEMAVDEK-DKREKYIKLLFELNE-LPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 133 iGt~~G~i~e~~i~~~-~~~e~~~k~v~~l~~-~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
+|...+.|-.+.+..- +++ .+.+.+.+ .....++|++. ++.+++++-|+...+|-+.+
T Consensus 157 ~~~~~~~IkLyD~Rs~dkgP----F~tf~i~~~~~~ew~~l~FS-----~dGK~iLlsT~~s~~~~lDA 216 (311)
T KOG1446|consen 157 LANGSELIKLYDLRSFDKGP----FTTFSITDNDEAEWTDLEFS-----PDGKSILLSTNASFIYLLDA 216 (311)
T ss_pred EecCCCeEEEEEecccCCCC----ceeEccCCCCccceeeeEEc-----CCCCEEEEEeCCCcEEEEEc
Confidence 4554445666655322 222 22333431 12347778775 44467777555666664443
No 100
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.45 E-value=0.15 Score=55.75 Aligned_cols=37 Identities=22% Similarity=0.477 Sum_probs=27.1
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+..|++|........ + ..|.+.+|||.|-..|+....
T Consensus 3 ~~~CP~Ck~~~y~np---~-----------~kl~i~~CGH~~C~sCv~~l~ 39 (309)
T TIGR00570 3 DQGCPRCKTTKYRNP---S-----------LKLMVNVCGHTLCESCVDLLF 39 (309)
T ss_pred CCCCCcCCCCCccCc---c-----------cccccCCCCCcccHHHHHHHh
Confidence 468999987544311 1 256777999999999998753
No 101
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=91.28 E-value=17 Score=41.56 Aligned_cols=48 Identities=10% Similarity=0.019 Sum_probs=35.1
Q ss_pred HHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
++..|++++|+...+.. ..-..++...|..++..|+|++|...+.+..
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 96 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLL 96 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHh
Confidence 45668888888886531 1123466778899999999999999887765
No 102
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=91.21 E-value=12 Score=43.33 Aligned_cols=128 Identities=17% Similarity=0.198 Sum_probs=80.1
Q ss_pred ceeEEEEeC-CEEEEEecCCeEEEEeC-CCCCcee--eEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 23 VITCMSAGN-DVIVLGTSKGWLIRHDF-GAGDSYD--IDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 23 ~i~~~~v~n-n~l~~~~~~g~l~ridl-~~~~~~~--~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
.|++|++.+ ..++..--+.+|-++++ +..-... +++. . ++ ..+-+.+.|..+++++. ++-. .+..
T Consensus 365 qI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg--~---QP-~~lav~~d~~~avv~~~---~~iv-~l~~- 433 (603)
T KOG0318|consen 365 QIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLG--S---QP-KGLAVLSDGGTAVVACI---SDIV-LLQD- 433 (603)
T ss_pred eEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecC--C---Cc-eeEEEcCCCCEEEEEec---CcEE-EEec-
Confidence 488999988 55544444458999988 3332322 3443 2 22 37778888877777776 3443 3322
Q ss_pred CCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
.+++-.++ -++...+||.++. ..++.+|..+|.|+.+.|.+....|. -.+-+-.++|+.|.+.
T Consensus 434 ~~~~~~~~--~~y~~s~vAv~~~------~~~vaVGG~Dgkvhvysl~g~~l~ee-----~~~~~h~a~iT~vayS 496 (603)
T KOG0318|consen 434 QTKVSSIP--IGYESSAVAVSPD------GSEVAVGGQDGKVHVYSLSGDELKEE-----AKLLEHRAAITDVAYS 496 (603)
T ss_pred CCcceeec--cccccceEEEcCC------CCEEEEecccceEEEEEecCCcccce-----eeeecccCCceEEEEC
Confidence 23333333 4678999999953 33899999999999999987532111 1111223789999986
No 103
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.06 E-value=0.15 Score=50.53 Aligned_cols=16 Identities=38% Similarity=0.912 Sum_probs=14.1
Q ss_pred EcCCChhHHHhHHHHH
Q 001978 868 FPCGHAFHAQCLIAHV 883 (987)
Q Consensus 868 FpCgH~fH~~CL~~~~ 883 (987)
-.|||.|-..|+.+.+
T Consensus 149 TkCGHvFC~~Cik~al 164 (187)
T KOG0320|consen 149 TKCGHVFCSQCIKDAL 164 (187)
T ss_pred cccchhHHHHHHHHHH
Confidence 5799999999998765
No 104
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=91.02 E-value=11 Score=40.45 Aligned_cols=149 Identities=15% Similarity=0.125 Sum_probs=99.7
Q ss_pred eeEEEEeCC--EEEEEecCCeEEEEeCCCCCceeeEcCCCCCC-ccceeEEEeCCCC-CeEEEEeecCCCccEEEEecCC
Q 001978 24 ITCMSAGND--VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPG-EQSIHKVFVDPGG-SHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 24 i~~~~v~nn--~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~-~~~i~~i~lDp~G-~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
+.|+|++.+ +++-|....+|..+|.-+.. .+.+. ..+ .+-|..+-+.|+- .-.|+++. -|+.+--++...
T Consensus 108 Vlsva~s~dn~qivSGSrDkTiklwnt~g~c--k~t~~--~~~~~~WVscvrfsP~~~~p~Ivs~s--~DktvKvWnl~~ 181 (315)
T KOG0279|consen 108 VLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC--KYTIH--EDSHREWVSCVRFSPNESNPIIVSAS--WDKTVKVWNLRN 181 (315)
T ss_pred eEEEEecCCCceeecCCCcceeeeeeecccE--EEEEe--cCCCcCcEEEEEEcCCCCCcEEEEcc--CCceEEEEccCC
Confidence 678888764 88999999999999983222 23333 122 4689999999995 33444432 267777777766
Q ss_pred CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccC
Q 001978 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLS 179 (987)
Q Consensus 100 ~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~ 179 (987)
-+.+.----+...++.|+..++- + -+.=|.++|.++.-.+..+ |.+|.++.. .+|.++.|.
T Consensus 182 ~~l~~~~~gh~~~v~t~~vSpDG-s-----lcasGgkdg~~~LwdL~~~-------k~lysl~a~-~~v~sl~fs----- 242 (315)
T KOG0279|consen 182 CQLRTTFIGHSGYVNTVTVSPDG-S-----LCASGGKDGEAMLWDLNEG-------KNLYSLEAF-DIVNSLCFS----- 242 (315)
T ss_pred cchhhccccccccEEEEEECCCC-C-----EEecCCCCceEEEEEccCC-------ceeEeccCC-CeEeeEEec-----
Confidence 55444221245689999999542 1 2444889999999988765 447878743 468888884
Q ss_pred CCceEEEEEECCCeEEEEe
Q 001978 180 NGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 180 ~~~~~~i~ast~~rly~f~ 198 (987)
++++.+.+.|...+--|.
T Consensus 243 -pnrywL~~at~~sIkIwd 260 (315)
T KOG0279|consen 243 -PNRYWLCAATATSIKIWD 260 (315)
T ss_pred -CCceeEeeccCCceEEEe
Confidence 347777777765555564
No 105
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.97 E-value=3.3 Score=50.30 Aligned_cols=151 Identities=13% Similarity=0.197 Sum_probs=101.2
Q ss_pred CceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 22 GVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 22 ~~i~~~~v~---nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
|-+||+|-+ .|...=|.-+|+|-.|++ +..-+...+++ .-|+-+-.-|.|...+|-|= +|.+++++.
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~------~lITAvcy~PdGk~avIGt~---~G~C~fY~t 480 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR------DLITAVCYSPDGKGAVIGTF---NGYCRFYDT 480 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh------hhheeEEeccCCceEEEEEe---ccEEEEEEc
Confidence 568888865 467788888999999999 65556777886 67899999999999999998 898865543
Q ss_pred CCCCc--------eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCC---CCC
Q 001978 98 KWSKP--------RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE---LPE 166 (987)
Q Consensus 98 ~~~k~--------k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~---~~~ 166 (987)
.-.|. +.=.|-+|..||.+.+.+.. . + ++|+-|+|-.|=.+.+...+ .+.++.+ ..+
T Consensus 481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~-~--~--~vLVTSnDSrIRI~d~~~~~-------lv~KfKG~~n~~S 548 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGD-P--D--EVLVTSNDSRIRIYDGRDKD-------LVHKFKGFRNTSS 548 (712)
T ss_pred cCCeEEEeeeEeeccCccccCceeeeeEecCCC-C--C--eEEEecCCCceEEEeccchh-------hhhhhcccccCCc
Confidence 22211 11123456689999998432 1 2 79999999888776553321 1222221 011
Q ss_pred ceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 167 AFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
.+.+ .+. .+.++||.++-+.-+|-|..
T Consensus 549 Q~~A-sfs-----~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 549 QISA-SFS-----SDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ceee-eEc-----cCCCEEEEeecCceEEEEeC
Confidence 1221 221 23479999998999999975
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=90.92 E-value=16 Score=46.45 Aligned_cols=254 Identities=13% Similarity=0.103 Sum_probs=133.2
Q ss_pred HHHHchhhHHHHHHhcCC----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCChHHHHHHhcCcChHHHHHHHHH
Q 001978 369 KVYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLL 444 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~~~E~v~lkFl~~~~~~~L~~YL~ 444 (987)
..+...+++++|+++|+. +...-..+...|.-+++.+++.+|+.. ... -.|...... .+..|+.
T Consensus 39 ~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------~~~~~~~~~-~~ve~~~ 106 (906)
T PRK14720 39 DAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---------DSFSQNLKW-AIVEHIC 106 (906)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---------hhcccccch-hHHHHHH
Confidence 345688999999999873 123345566666688888898888876 222 112222222 4555555
Q ss_pred HHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccc-cCC-HHHHHHHHHHcC
Q 001978 445 RKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKD-VLD-EATTMKLLESYG 522 (987)
Q Consensus 445 ~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~-~ld-~~tv~~ll~~~g 522 (987)
.++.....+. ..+ --+.++|- +++.. .+...-.++.|+-..+ ..= ..-+|.+-..
T Consensus 107 ~~i~~~~~~k----~Al-~~LA~~Yd-k~g~~---------------~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-- 163 (906)
T PRK14720 107 DKILLYGENK----LAL-RTLAEAYA-KLNEN---------------KKLKGVWERLVKADRDNPEIVKKLATSYEEE-- 163 (906)
T ss_pred HHHHhhhhhh----HHH-HHHHHHHH-HcCCh---------------HHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--
Confidence 5443222211 111 12334443 11111 1111222222221110 000 0112322222
Q ss_pred ChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCC----CchhhHHhhHHHHHhH-ChHHHHHHHHcCCCCCCCcc
Q 001978 523 RVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPA----VPIDLQYKFAPDLIML-DAYETVESWMTTNNLNPRKL 597 (987)
Q Consensus 523 ~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~----~~~~li~k~~~~Ll~~-~p~~ti~~l~~~~~ld~~~l 597 (987)
..+.++.+++ ..+..|+..++|.+++++|.+.- +..+.+++.-..+... .-.+.+++ +
T Consensus 164 dL~KA~~m~~------KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~-----------~ 226 (906)
T PRK14720 164 DKEKAITYLK------KAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGL-----------L 226 (906)
T ss_pred hHHHHHHHHH------HHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHH-----------H
Confidence 5666666654 47778999999999999998752 2234444443333322 11222222 2
Q ss_pred hhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHH
Q 001978 598 IPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYA 677 (987)
Q Consensus 598 ip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~a 677 (987)
.|....|... ..-+.++.||+.++.-.+......++.....-.+|.+.+.+-.||+-+ +..+ ..=++..+
T Consensus 227 ~~l~~~y~~~----~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s---~l~~---~~~~~~~~ 296 (906)
T PRK14720 227 EDLYEPYKAL----EDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMS---DIGN---NRKPVKDC 296 (906)
T ss_pred HHHHHHHhhh----hhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHh---cccc---CCccHHHH
Confidence 3444444432 124579999999998776666666665554444466667888899987 1222 22355677
Q ss_pred HHHHHhc
Q 001978 678 LRLCLKE 684 (987)
Q Consensus 678 Lrlc~~~ 684 (987)
+.-+..+
T Consensus 297 i~~fek~ 303 (906)
T PRK14720 297 IADFEKN 303 (906)
T ss_pred HHHHHHH
Confidence 7766665
No 107
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=90.79 E-value=32 Score=42.86 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeeh
Q 001978 613 ETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVH 692 (987)
Q Consensus 613 ~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~ 692 (987)
..+.|+.||.-+.+........++-.+-+.|...+..+.-+.|-+.-- ...| .++|.-.-| .-
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl----~~~p-~~~D~Ri~L------------as 491 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVL----ILAP-DNLDARITL------------AS 491 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH----hcCC-CchhhhhhH------------HH
Confidence 467899999999887766666777777777777543344555544430 0011 234443322 34
Q ss_pred hhhccccHHHHHHHHHh
Q 001978 693 IYGMMSMHEEAVALALQ 709 (987)
Q Consensus 693 L~~~~g~~~eAl~l~l~ 709 (987)
||.++|++++|++.+-.
T Consensus 492 l~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHhcCCHHHHHHHHhc
Confidence 78899999999998766
No 108
>PTZ00420 coronin; Provisional
Probab=90.13 E-value=18 Score=43.89 Aligned_cols=70 Identities=10% Similarity=0.145 Sum_probs=51.0
Q ss_pred CceeEEEEeCC---EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 22 GVITCMSAGND---VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 22 ~~i~~~~v~nn---~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
+.|++++.+.+ +++-|..+|+|..||+ .+..+..+..+ ..|..+-.+|.|..+++++. ++....+..
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~------~~V~SlswspdG~lLat~s~---D~~IrIwD~ 196 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP------KKLSSLKWNIKGNLLSGTCV---GKHMHIIDP 196 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC------CcEEEEEECCCCCEEEEEec---CCEEEEEEC
Confidence 56899998863 4556677899999999 55544444322 46899999999998877666 687777776
Q ss_pred CCC
Q 001978 98 KWS 100 (987)
Q Consensus 98 ~~~ 100 (987)
...
T Consensus 197 Rsg 199 (568)
T PTZ00420 197 RKQ 199 (568)
T ss_pred CCC
Confidence 543
No 109
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=90.10 E-value=49 Score=42.07 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=25.2
Q ss_pred HHchhhHHHHHHhcCC-----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~-----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
+...|++++|+++.+. |.. .......|.-+...|++.+|...+.+..
T Consensus 59 ~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 59 YRNLKQWQNSLTLWQKALSLEPQN-DDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555666666665442 222 2233455555666666666666665543
No 110
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=89.94 E-value=0.18 Score=41.76 Aligned_cols=31 Identities=13% Similarity=0.400 Sum_probs=26.1
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
.|++|++.+.. | |+.+|||+|-+.|+.+.+.
T Consensus 3 ~Cpi~~~~~~~------------------P-v~~~~G~v~~~~~i~~~~~ 33 (63)
T smart00504 3 LCPISLEVMKD------------------P-VILPSGQTYERRAIEKWLL 33 (63)
T ss_pred CCcCCCCcCCC------------------C-EECCCCCEEeHHHHHHHHH
Confidence 59999988665 6 5679999999999998874
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=89.86 E-value=7.3 Score=48.02 Aligned_cols=146 Identities=12% Similarity=0.204 Sum_probs=95.4
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CC-CCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC
Q 001978 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GA-GDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK 101 (987)
Q Consensus 24 i~~~~v~nn~l~~~~~~g~l~ridl-~~-~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (987)
-.|++-.++++|..-++|.|-.|+- .+ ++...|++. ...|..+-.+. .|++.++. ++.+.-....+..
T Consensus 18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~-----g~~v~~ia~~s--~~f~~~s~---~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDIS-----GELVSSIACYS--NHFLTGSE---QNTVLRYKFPSGE 87 (933)
T ss_pred EEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhcc-----CceeEEEeecc--cceEEeec---cceEEEeeCCCCC
Confidence 3577788899999999999999976 55 445545442 35677777654 48999888 6776544444444
Q ss_pred ce-eccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCC
Q 001978 102 PR-VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (987)
Q Consensus 102 ~k-~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (987)
.. .|.++ -.+|+.++++.+ ..-+..|+.+-.|-....+.. . -.. .+-+-.+||.+|.+..
T Consensus 88 ~~~iL~Rf-tlp~r~~~v~g~------g~~iaagsdD~~vK~~~~~D~-s----~~~--~lrgh~apVl~l~~~p----- 148 (933)
T KOG1274|consen 88 EDTILARF-TLPIRDLAVSGS------GKMIAAGSDDTAVKLLNLDDS-S----QEK--VLRGHDAPVLQLSYDP----- 148 (933)
T ss_pred ccceeeee-eccceEEEEecC------CcEEEeecCceeEEEEecccc-c----hhe--eecccCCceeeeeEcC-----
Confidence 33 56654 468999999932 224666677754555544432 1 111 2222237899999973
Q ss_pred CceEEEEEECCCeEEEEe
Q 001978 181 GTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 181 ~~~~~i~ast~~rly~f~ 198 (987)
+..++++++++..++-|.
T Consensus 149 ~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CCCEEEEEecCceEEEEE
Confidence 346888888888888775
No 112
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=89.60 E-value=2.9 Score=48.42 Aligned_cols=85 Identities=19% Similarity=0.348 Sum_probs=53.6
Q ss_pred CCceeEEEEeC-CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 21 RGVITCMSAGN-DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 21 ~~~i~~~~v~n-n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
++.||+++.+| +++++|..+|.|..||+ +|.-+..-.+- .
T Consensus 86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~---------------~----------------------- 127 (395)
T PF08596_consen 86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIR---------------E----------------------- 127 (395)
T ss_dssp S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGG---------------G-----------------------
T ss_pred CCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeecccc---------------c-----------------------
Confidence 35799999965 69999999999999999 66543322221 0
Q ss_pred CCCceeccCCCCceEEEEeecCCC--CCCCCcceEEEEcCCCcEEEEEecc
Q 001978 99 WSKPRVLSKLKGLVVNAVAWNRQQ--ITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~sVaw~~~~--~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
+.+++.++..|+++.|.--. ....++-.+++||+.|.++-+.|.+
T Consensus 128 ----~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 128 ----SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp ------T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred ----cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence 12233345567777775111 1223556789999999999999875
No 113
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=89.45 E-value=12 Score=40.70 Aligned_cols=149 Identities=16% Similarity=0.201 Sum_probs=93.8
Q ss_pred eeEEEEeCCEE-EEEecCCeEEEEe-C-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 001978 24 ITCMSAGNDVI-VLGTSKGWLIRHD-F-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (987)
Q Consensus 24 i~~~~v~nn~l-~~~~~~g~l~rid-l-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (987)
+||+..+.+-- .+..+.....||- + .+.-..++.=+ .+-|+..-..+.|+|+|.++. +|.+-.+|.+..
T Consensus 309 vt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-----sSyvn~a~ft~dG~~iisaSs---DgtvkvW~~Ktt 380 (508)
T KOG0275|consen 309 VTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-----SSYVNEATFTDDGHHIISASS---DGTVKVWHGKTT 380 (508)
T ss_pred eeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc-----cccccceEEcCCCCeEEEecC---CccEEEecCcch
Confidence 78888876644 4445555666653 3 22224445433 357777777889999999988 999999998776
Q ss_pred ----CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCC-CceeeEEEEe
Q 001978 101 ----KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELP-EAFMGLQMET 175 (987)
Q Consensus 101 ----k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~-~~I~gi~~~~ 175 (987)
.+|++. -+..|.+|-.-|-+ +..|++......||..++.+. .++. +.....+ +....-.+
T Consensus 381 eC~~Tfk~~~--~d~~vnsv~~~PKn-----peh~iVCNrsntv~imn~qGQ-----vVrs-fsSGkREgGdFi~~~l-- 445 (508)
T KOG0275|consen 381 ECLSTFKPLG--TDYPVNSVILLPKN-----PEHFIVCNRSNTVYIMNMQGQ-----VVRS-FSSGKREGGDFINAIL-- 445 (508)
T ss_pred hhhhhccCCC--CcccceeEEEcCCC-----CceEEEEcCCCeEEEEeccce-----EEee-eccCCccCCceEEEEe--
Confidence 457776 56899999988432 347888888888999888753 2232 2332211 11111111
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 001978 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (987)
+.+++ |+.-+.-+..||.|.
T Consensus 446 -SpkGe--wiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 446 -SPKGE--WIYCIGEDGVLYCFS 465 (508)
T ss_pred -cCCCc--EEEEEccCcEEEEEE
Confidence 12343 444445688899885
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=89.26 E-value=3.7 Score=44.40 Aligned_cols=147 Identities=12% Similarity=0.163 Sum_probs=91.4
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC--CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE--EEEec
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET--FYTHA 97 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl--~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~--~Y~~~ 97 (987)
+.+-|+.|..-++++||.+..|..++| .|.+..+++-|.+-. .+---+|-|..|. +|=+.+ |-+ .|++.
T Consensus 157 eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q--~R~va~f~d~~~~-alGsiE----Grv~iq~id~ 229 (347)
T KOG0647|consen 157 ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQ--TRCVACFQDKDGF-ALGSIE----GRVAIQYIDD 229 (347)
T ss_pred ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccce--eeEEEEEecCCce-Eeeeec----ceEEEEecCC
Confidence 456789999999999999999999999 455567777775522 3445567787776 444444 544 57766
Q ss_pred CCCC------cee----ccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCc
Q 001978 98 KWSK------PRV----LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEA 167 (987)
Q Consensus 98 ~~~k------~k~----L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~ 167 (987)
..++ .+. ... +=+.|.+|+|++. .|.|+...+||..-.-.=+.+ ..+|. .+..+.|
T Consensus 230 ~~~~~nFtFkCHR~~~~~~~-~VYaVNsi~FhP~------hgtlvTaGsDGtf~FWDkdar----~kLk~---s~~~~qp 295 (347)
T KOG0647|consen 230 PNPKDNFTFKCHRSTNSVND-DVYAVNSIAFHPV------HGTLVTAGSDGTFSFWDKDAR----TKLKT---SETHPQP 295 (347)
T ss_pred CCccCceeEEEeccCCCCCC-ceEEecceEeecc------cceEEEecCCceEEEecchhh----hhhhc---cCcCCCc
Confidence 4322 111 110 2368999999952 467999999995544322221 01222 2222467
Q ss_pred eeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 168 FMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
|+.-.+.+ +..+++.|. =|+|.
T Consensus 296 Itcc~fn~-----~G~ifaYA~----gYDWS 317 (347)
T KOG0647|consen 296 ITCCSFNR-----NGSIFAYAL----GYDWS 317 (347)
T ss_pred cceeEecC-----CCCEEEEEe----ecccc
Confidence 88877753 225677763 36675
No 115
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=89.22 E-value=1.1 Score=47.27 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=54.1
Q ss_pred CCCceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCce-eeEcCCCCCCccceeEEEeCCC-CCeEEEEeecCCCccEE
Q 001978 20 GRGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDSY-DIDLSAGRPGEQSIHKVFVDPG-GSHCIATIVGSGGAETF 93 (987)
Q Consensus 20 ~~~~i~~~~v~---nn~l~~~~~~g~l~ridl-~~~~~~-~~~l~~~~~~~~~i~~i~lDp~-G~hlli~~~~~~~g~~~ 93 (987)
.-+++++++.+ ++++|.|+..|.+-.||. +-..+. -+..+ ...|..|.+.|+ +.||+.|++ +|..+
T Consensus 178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-----k~~i~eV~FHpk~p~~Lft~se---dGslw 249 (319)
T KOG4714|consen 178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-----KAEIWEVHFHPKNPEHLFTCSE---DGSLW 249 (319)
T ss_pred ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-----hhhhhheeccCCCchheeEecC---CCcEE
Confidence 34558888875 568999999999999999 432211 11222 467899999996 999999999 99999
Q ss_pred EEecC
Q 001978 94 YTHAK 98 (987)
Q Consensus 94 Y~~~~ 98 (987)
.+..+
T Consensus 250 ~wdas 254 (319)
T KOG4714|consen 250 HWDAS 254 (319)
T ss_pred EEcCC
Confidence 88765
No 116
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=89.21 E-value=22 Score=44.09 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 394 YLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 394 ~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
+...|.++|..|++++|.+++.+..
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvI 166 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVI 166 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5678999999999999999998876
No 117
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.19 E-value=0.2 Score=52.87 Aligned_cols=36 Identities=25% Similarity=0.595 Sum_probs=29.6
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
-+.+..|.+||.+=.. |++.=+|||.|-.-|+....
T Consensus 236 ~t~~~~C~~Cg~~Pti------------------P~~~~~C~HiyCY~Ci~ts~ 271 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTI------------------PHVIGKCGHIYCYYCIATSR 271 (298)
T ss_pred ccCCceeeccCCCCCC------------------Ceeeccccceeehhhhhhhh
Confidence 3456899999987444 89999999999999997654
No 118
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=89.19 E-value=5.5 Score=46.54 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=69.2
Q ss_pred EEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEE-eecCCCccEEEEecCCC-Cceecc----
Q 001978 34 IVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT-IVGSGGAETFYTHAKWS-KPRVLS---- 106 (987)
Q Consensus 34 l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~-~~~~~~g~~~Y~~~~~~-k~k~L~---- 106 (987)
|++|-+...|||++| ++-=.. |.... .+.++.|-+.|-- +||.| |. +|.+=+|..... .+..|.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~----P~~~~-~~~lN~v~in~~h-gLla~Gt~---~g~VEfwDpR~ksrv~~l~~~~~ 218 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLN----PFETD-SGELNVVSINEEH-GLLACGTE---DGVVEFWDPRDKSRVGTLDAASS 218 (703)
T ss_pred EEEeecCcceEEEEcccccccc----ccccc-cccceeeeecCcc-ceEEeccc---CceEEEecchhhhhheeeecccc
Confidence 444545559999999 432222 32221 3577888887643 35544 44 687767754322 122221
Q ss_pred --CCCC----ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 107 --KLKG----LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 107 --klkg----~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
..-| ..|+++.|.++ .=.+-|||+.|.+|.+.|-.+. +- .+| -.+..-||-.|.|..
T Consensus 219 v~s~pg~~~~~svTal~F~d~------gL~~aVGts~G~v~iyDLRa~~-pl-~~k----dh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 219 VNSHPGGDAAPSVTALKFRDD------GLHVAVGTSTGSVLIYDLRASK-PL-LVK----DHGYELPIKKLDWQD 281 (703)
T ss_pred cCCCccccccCcceEEEecCC------ceeEEeeccCCcEEEEEcccCC-ce-eec----ccCCccceeeecccc
Confidence 0011 25999999843 2379999999999999997651 10 111 111124588888853
No 119
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.16 E-value=12 Score=40.53 Aligned_cols=70 Identities=17% Similarity=0.160 Sum_probs=45.3
Q ss_pred cccchhhHHHHHHchhhHHHHHHhcCC-----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCChHHHHHHhc
Q 001978 360 VNDEGRDMWKVYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFI 431 (987)
Q Consensus 360 ~~~e~~~~W~~ll~~~~fe~Al~~~~~-----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~~~E~v~lkFl 431 (987)
.+.|...+.+-++...+|+.|+++... |..|.. +..-|.-++...+|.+||.+|.+... ..+++--.+|-
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAg-LSlLgyCYY~~Q~f~~AA~CYeQL~q-l~P~~~qYrlY 83 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAG-LSLLGYCYYRLQEFALAAECYEQLGQ-LHPELEQYRLY 83 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHh-hChHHHHHHHH
Confidence 445555566568999999999999653 333332 33445556666789999999999862 33444444443
No 120
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=89.13 E-value=6.8 Score=44.08 Aligned_cols=117 Identities=10% Similarity=0.049 Sum_probs=75.2
Q ss_pred cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceec----cCCCCceE
Q 001978 39 SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVL----SKLKGLVV 113 (987)
Q Consensus 39 ~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L----~klkg~~i 113 (987)
-.++|--||. .+..+..+++. ++|+.+-+.+.|.+++.|+. +-..=-+.......+.. .-.-+++.
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~g------g~vtSl~ls~~g~~lLsssR---Ddtl~viDlRt~eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLG------GRVTSLDLSMDGLELLSSSR---DDTLKVIDLRTKEIRQTFSAEGFKCASDW 390 (459)
T ss_pred cccceEEEeccCCceeeEeecC------cceeeEeeccCCeEEeeecC---CCceeeeecccccEEEEeecccccccccc
Confidence 3466777798 66666666553 69999999999999999976 33222222222222221 11125678
Q ss_pred EEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 114 NAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 114 ~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
+.|.|.|. ..-++-|+.+|.||.-.+..++ +..+.+++..+..|+++.|..
T Consensus 391 trvvfSpd------~~YvaAGS~dgsv~iW~v~tgK-----lE~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 391 TRVVFSPD------GSYVAAGSADGSVYIWSVFTGK-----LEKVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred ceeEECCC------CceeeeccCCCcEEEEEccCce-----EEEEeccCCCCcceEEEEEcC
Confidence 88888743 2257788999999998887652 222234554444699999974
No 121
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=88.87 E-value=0.073 Score=43.62 Aligned_cols=31 Identities=23% Similarity=0.531 Sum_probs=16.4
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIA 881 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~ 881 (987)
.-+|+.|...|-. |+..+.|.|.|-+.|..+
T Consensus 7 lLrCs~C~~~l~~------------------pv~l~~CeH~fCs~Ci~~ 37 (65)
T PF14835_consen 7 LLRCSICFDILKE------------------PVCLGGCEHIFCSSCIRD 37 (65)
T ss_dssp TTS-SSS-S--SS-------------------B---SSS--B-TTTGGG
T ss_pred hcCCcHHHHHhcC------------------CceeccCccHHHHHHhHH
Confidence 4589999988666 889999999999999854
No 122
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.83 E-value=15 Score=43.58 Aligned_cols=152 Identities=15% Similarity=0.195 Sum_probs=95.5
Q ss_pred CceeEEEEeCCE--EEEEecCCeEEEEeC-CCCC-ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 22 GVITCMSAGNDV--IVLGTSKGWLIRHDF-GAGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 22 ~~i~~~~v~nn~--l~~~~~~g~l~ridl-~~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
..|.+++.+.+- ++=|..+++|-.||+ .+.. +..+.=| ...|+.+-++|.| +++++.. +++.+..++.
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH-----~~~v~~~~f~p~g-~~i~Sgs--~D~tvriWd~ 275 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGH-----STYVTSVAFSPDG-NLLVSGS--DDGTVRIWDV 275 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCC-----CCceEEEEecCCC-CEEEEec--CCCcEEEEec
Confidence 347888887764 555667789999999 5533 3333323 3578999999999 5555543 2899999988
Q ss_pred CCCCceeccCCCCc--eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 98 KWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 98 ~~~k~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
..- +.+.+++++ .|++++++++ ...++.|+.+|.|....+..... +-.+.+ .-.+.+.|++.+.+..
T Consensus 276 ~~~--~~~~~l~~hs~~is~~~f~~d------~~~l~s~s~d~~i~vwd~~~~~~--~~~~~~-~~~~~~~~~~~~~fsp 344 (456)
T KOG0266|consen 276 RTG--ECVRKLKGHSDGISGLAFSPD------GNLLVSASYDGTIRVWDLETGSK--LCLKLL-SGAENSAPVTSVQFSP 344 (456)
T ss_pred cCC--eEEEeeeccCCceEEEEECCC------CCEEEEcCCCccEEEEECCCCce--eeeecc-cCCCCCCceeEEEECC
Confidence 763 333344443 8999999943 34788888899999988765411 011222 2222112688888862
Q ss_pred eccCCCceEEEEEECCCeEEEE
Q 001978 176 ASLSNGTRYYVMAVTPTRLYSF 197 (987)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f 197 (987)
+..+++.++.+..+-.|
T Consensus 345 -----~~~~ll~~~~d~~~~~w 361 (456)
T KOG0266|consen 345 -----NGKYLLSASLDRTLKLW 361 (456)
T ss_pred -----CCcEEEEecCCCeEEEE
Confidence 33566666555344434
No 123
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=88.44 E-value=7.9 Score=45.32 Aligned_cols=107 Identities=13% Similarity=0.207 Sum_probs=76.7
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCC----CC--CccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 001978 23 VITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAG----RP--GEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~----~~--~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (987)
+++.+.-.+..++.|+.+|.|=-||. ..+.+..++++.. ++ ....|+-+-++-.|-|+.|.|. +|.+|..
T Consensus 179 N~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts---~G~v~iy 255 (703)
T KOG2321|consen 179 NVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS---TGSVLIY 255 (703)
T ss_pred eeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc---CCcEEEE
Confidence 34445555789999999999999999 8888877776544 11 1246899999888999999998 8999888
Q ss_pred ecCCCCceeccC-CCCceEEEEeecCCCCCCCCcceEEEEcCC
Q 001978 96 HAKWSKPRVLSK-LKGLVVNAVAWNRQQITEASTKEIILGTDT 137 (987)
Q Consensus 96 ~~~~~k~k~L~k-lkg~~i~sVaw~~~~~~~~st~~iLiGt~~ 137 (987)
.....++-.... .-+.+|..+.|.+. +++.-|+-+.+
T Consensus 256 DLRa~~pl~~kdh~~e~pi~~l~~~~~-----~~q~~v~S~Dk 293 (703)
T KOG2321|consen 256 DLRASKPLLVKDHGYELPIKKLDWQDT-----DQQNKVVSMDK 293 (703)
T ss_pred EcccCCceeecccCCccceeeeccccc-----CCCceEEecch
Confidence 877776544332 12369999999843 23445554433
No 124
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=88.34 E-value=9.5 Score=42.00 Aligned_cols=175 Identities=9% Similarity=0.060 Sum_probs=100.0
Q ss_pred cceehhH--HHHHhhcCCCceeEEEE----eCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCC
Q 001978 6 QVFQVDV--LERYAAKGRGVITCMSA----GNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGS 78 (987)
Q Consensus 6 ~~f~~~~--~~~~~~~~~~~i~~~~v----~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~ 78 (987)
.+|..++ .-+.|.-.++.+.-+.+ +.+.+.-+...|+|-.||+ -..++.++.-...+ .-.-+.+|-+..
T Consensus 53 ~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~----~~~f~~ld~nck 128 (376)
T KOG1188|consen 53 RLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS----GTPFICLDLNCK 128 (376)
T ss_pred EEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC----CCcceEeeccCc
Confidence 4566666 22333333334444444 4578999999999999999 44555445443211 123355676644
Q ss_pred eEEEEee---cCCCccEEEEec-CCCC-ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccc
Q 001978 79 HCIATIV---GSGGAETFYTHA-KWSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREK 153 (987)
Q Consensus 79 hlli~~~---~~~~g~~~Y~~~-~~~k-~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~ 153 (987)
+=++|+. ...+..++.+.- .+.+ ++.+..-..-+||+|.|.|.. + .-+|-|+.+|.+-.+.++.. .+|-
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~-p----nlLlSGSvDGLvnlfD~~~d-~EeD 202 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD-P----NLLLSGSVDGLVNLFDTKKD-NEED 202 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-C----CeEEeecccceEEeeecCCC-cchh
Confidence 4444443 113445555553 4444 677776666799999999543 2 15677889999888877654 2333
Q ss_pred eeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEE
Q 001978 154 YIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSF 197 (987)
Q Consensus 154 ~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f 197 (987)
.+-++++.. ++|..|.|.. +..+.+.-.|+..-++-|
T Consensus 203 aL~~viN~~---sSI~~igw~~----~~ykrI~clTH~Etf~~~ 239 (376)
T KOG1188|consen 203 ALLHVINHG---SSIHLIGWLS----KKYKRIMCLTHMETFAIY 239 (376)
T ss_pred hHHHhhccc---ceeeeeeeec----CCcceEEEEEccCceeEE
Confidence 344444443 5688888874 222233333554444433
No 125
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.32 E-value=0.12 Score=43.47 Aligned_cols=48 Identities=31% Similarity=0.527 Sum_probs=36.8
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
..+++.|.+|+-+..+... .+..++..+|+|.=.|.|+||..|..+-+
T Consensus 17 ~~~~e~CGiCRm~Fdg~Cp------~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl 64 (84)
T KOG1493|consen 17 DAPDETCGICRMPFDGCCP------DCKLPGDDCPLVWGYCLHAFHAHCILKWL 64 (84)
T ss_pred cCCCCccceEecccCCcCC------CCcCCCCCCccHHHHHHHHHHHHHHHHHh
Confidence 4567899999988877332 23345677788777899999999998765
No 126
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=88.24 E-value=1.1 Score=37.10 Aligned_cols=49 Identities=10% Similarity=0.293 Sum_probs=40.7
Q ss_pred HHHchhhHHHHHHhcCC----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+++.|+|++|++..+. ...-..+....|.-++..|+|++|+..|.+..
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 58999999999999753 33466889999999999999999999988764
No 127
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.23 E-value=22 Score=38.72 Aligned_cols=164 Identities=12% Similarity=0.117 Sum_probs=90.8
Q ss_pred CceeEE--EEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCC-CCeEEEEeecCCCccEEEEec
Q 001978 22 GVITCM--SAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPG-GSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 22 ~~i~~~--~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~-G~hlli~~~~~~~g~~~Y~~~ 97 (987)
|-|+|+ .-+++-|+-+..+++|-.+|+ .++..-++.-.-+..+.+.+.=+|..|. |+-+..|+- |+..-.+-+
T Consensus 14 DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~---Drtv~iWEE 90 (361)
T KOG2445|consen 14 DLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY---DRTVSIWEE 90 (361)
T ss_pred ceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEec---CCceeeeee
Confidence 456554 457888888899999999998 4444322221111112345555677774 777776665 443322211
Q ss_pred ----------CCCCc---------------------------------------------------------eeccCCCC
Q 001978 98 ----------KWSKP---------------------------------------------------------RVLSKLKG 110 (987)
Q Consensus 98 ----------~~~k~---------------------------------------------------------k~L~klkg 110 (987)
.|.+. -++.|. -
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~-~ 169 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN-K 169 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc-c
Confidence 01000 011111 1
Q ss_pred ceEEEEeecCCCCCCCCcceEEEEcCC-------CcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCce
Q 001978 111 LVVNAVAWNRQQITEASTKEIILGTDT-------GQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTR 183 (987)
Q Consensus 111 ~~i~sVaw~~~~~~~~st~~iLiGt~~-------G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~ 183 (987)
...-||.||+ ++..+.-|.+|..+ -.|||+.=.. +.+..+-+|++.+.||+.|.|....+ -...
T Consensus 170 ~~~~CvsWn~---sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~-----rKw~kva~L~d~~dpI~di~wAPn~G-r~y~ 240 (361)
T KOG2445|consen 170 QPCFCVSWNP---SRMHEPLIAVGSDEDAPHLNKVKIYEYNENG-----RKWLKVAELPDHTDPIRDISWAPNIG-RSYH 240 (361)
T ss_pred CcceEEeecc---ccccCceEEEEcccCCccccceEEEEecCCc-----ceeeeehhcCCCCCcceeeeeccccC-Ccee
Confidence 2455888883 34456678888765 3455543222 23566678888778999999985332 2234
Q ss_pred EEEEEECC-CeEEEEe
Q 001978 184 YYVMAVTP-TRLYSFT 198 (987)
Q Consensus 184 ~~i~ast~-~rly~f~ 198 (987)
.+.+|+.. .|+|...
T Consensus 241 ~lAvA~kDgv~I~~v~ 256 (361)
T KOG2445|consen 241 LLAVATKDGVRIFKVK 256 (361)
T ss_pred eEEEeecCcEEEEEEe
Confidence 45555544 4555443
No 128
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.03 E-value=26 Score=42.59 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=97.1
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
+.+|++++.+.+ ++...-..|..+.+.+ ...-..++.+. .+|..|-..|+|....|+.. ...--+|.
T Consensus 55 ~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk------~~v~~i~fSPng~~fav~~g----n~lqiw~~ 124 (893)
T KOG0291|consen 55 RYNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFK------RGVGAIKFSPNGKFFAVGCG----NLLQIWHA 124 (893)
T ss_pred CCceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeec------CccceEEECCCCcEEEEEec----ceeEEEec
Confidence 457899999988 7777778888888888 44444445443 56888999999998888764 22222222
Q ss_pred -CCC-----CceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCcee
Q 001978 98 -KWS-----KPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (987)
Q Consensus 98 -~~~-----k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~ 169 (987)
+.. .+..-....| -+|+|+-|.. +++-|++|+++-..-...+++.+ .++. |.+.+-..+|.
T Consensus 125 P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~------DSr~l~~gsrD~s~rl~~v~~~k----~~~~-~~l~gHkd~Vv 193 (893)
T KOG0291|consen 125 PGEIKNEFNPFVLHRTYLGHFDDITSIDWSD------DSRLLVTGSRDLSARLFGVDGNK----NLFT-YALNGHKDYVV 193 (893)
T ss_pred CcchhcccCcceEeeeecCCccceeEEEecc------CCceEEeccccceEEEEEecccc----ccce-EeccCCCcceE
Confidence 111 1111222334 3899999983 34578888888776666665532 1222 45554346788
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEecC
Q 001978 170 GLQMETASLSNGTRYYVMAVTPTRLYSFTGF 200 (987)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~g~ 200 (987)
+-.+.. ++ .-++.++-..-++.|...
T Consensus 194 acfF~~----~~-~~l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 194 ACFFGA----NS-LDLYTVSKDGALFVWTCD 219 (893)
T ss_pred EEEecc----Cc-ceEEEEecCceEEEEEec
Confidence 877753 22 345555677777778654
No 129
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=87.93 E-value=7 Score=48.82 Aligned_cols=132 Identities=14% Similarity=0.176 Sum_probs=81.0
Q ss_pred cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-----CCCeEEEEeecCCCccEEEEecCCCCceec-cCC---
Q 001978 39 SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-----GGSHCIATIVGSGGAETFYTHAKWSKPRVL-SKL--- 108 (987)
Q Consensus 39 ~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-----~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L-~kl--- 108 (987)
..+.||++|| .+.-|++..++. +.+|..+.-+. +..-.+++.+ +-..|.+..+....+.+ ...
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~----~~~v~~~~p~~K~aqlt~e~tflGls---~n~lfriDpR~~~~k~v~~~~k~Y 574 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHD----DIPVVDIAPDSKFAQLTNEQTFLGLS---DNSLFRIDPRLSGNKLVDSQSKQY 574 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCC----CcceeEecccccccccCCCceEEEEC---CCceEEeccCCCCCceeecccccc
Confidence 5688999999 777788888874 23466666543 2455677776 56667776543221111 011
Q ss_pred -CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEE
Q 001978 109 -KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVM 187 (987)
Q Consensus 109 -kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ 187 (987)
.+...+|+|=. ..|.|.||+.+|.|=.+.=. -+..|+. +|+-..||+||-+.. + +-.|+
T Consensus 575 ~~~~~Fs~~aTt-------~~G~iavgs~~G~IRLyd~~-----g~~AKT~--lp~lG~pI~~iDvt~-----D-Gkwil 634 (794)
T PF08553_consen 575 SSKNNFSCFATT-------EDGYIAVGSNKGDIRLYDRL-----GKRAKTA--LPGLGDPIIGIDVTA-----D-GKWIL 634 (794)
T ss_pred ccCCCceEEEec-------CCceEEEEeCCCcEEeeccc-----chhhhhc--CCCCCCCeeEEEecC-----C-CcEEE
Confidence 23455555543 35899999999988776411 1335664 554347899999863 2 34556
Q ss_pred EECCCeEEEE
Q 001978 188 AVTPTRLYSF 197 (987)
Q Consensus 188 ast~~rly~f 197 (987)
|||.+-|.-+
T Consensus 635 aTc~tyLlLi 644 (794)
T PF08553_consen 635 ATCKTYLLLI 644 (794)
T ss_pred EeecceEEEE
Confidence 6887766633
No 130
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.92 E-value=39 Score=35.62 Aligned_cols=88 Identities=10% Similarity=0.046 Sum_probs=47.5
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCc
Q 001978 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKP 102 (987)
Q Consensus 24 i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~ 102 (987)
+...-|-.|.-.-.-+..+|-.|+. ...-+.++.-+ .-.|..+-+.....-+..| +|+-.++|+.-..-
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh-----G~EVlD~~~s~Dnskf~s~---GgDk~v~vwDV~TG-- 91 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH-----GHEVLDAALSSDNSKFASC---GGDKAVQVWDVNTG-- 91 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeecccccceeeeecCC-----CceeeeccccccccccccC---CCCceEEEEEcccC--
Confidence 3344444444333334445656676 44444444333 2344444443333222222 23667788877554
Q ss_pred eeccCCCCc--eEEEEeecCC
Q 001978 103 RVLSKLKGL--VVNAVAWNRQ 121 (987)
Q Consensus 103 k~L~klkg~--~i~sVaw~~~ 121 (987)
|++.|++|| .|..|+||+.
T Consensus 92 kv~Rr~rgH~aqVNtV~fNee 112 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEE 112 (307)
T ss_pred eeeeecccccceeeEEEecCc
Confidence 567778776 7899999965
No 131
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=87.84 E-value=0.57 Score=39.04 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=39.4
Q ss_pred HHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
+++.|+|++|+++.+.- .+-..+...+|..++..|+|++|.+.+.+..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57899999999998742 2345777899999999999999999998875
No 132
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.74 E-value=0.36 Score=51.52 Aligned_cols=37 Identities=22% Similarity=0.633 Sum_probs=27.0
Q ss_pred ccccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 828 AVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 828 ~~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
.+-.++.+|.+|=.....+. .-||||.|-..|+....
T Consensus 234 ~i~~a~~kC~LCLe~~~~pS-------------------aTpCGHiFCWsCI~~w~ 270 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNPS-------------------ATPCGHIFCWSCILEWC 270 (293)
T ss_pred cCCCCCCceEEEecCCCCCC-------------------cCcCcchHHHHHHHHHH
Confidence 34445689999987665431 34999999999997664
No 133
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=87.65 E-value=9.8 Score=39.42 Aligned_cols=110 Identities=17% Similarity=0.226 Sum_probs=61.7
Q ss_pred EEeCCCCCeEEEEeecC--CCc-------cEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEE
Q 001978 71 VFVDPGGSHCIATIVGS--GGA-------ETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLH 141 (987)
Q Consensus 71 i~lDp~G~hlli~~~~~--~~g-------~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~ 141 (987)
++=.|.|.+|++.+.+. .+| +.||+.........+.--+.-.|.+|+|+|.. +.--++.|...+.|-
T Consensus 11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g----~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNG----NEFAVIYGSMPAKVT 86 (194)
T ss_pred EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCC----CEEEEEEccCCcccE
Confidence 44479999988887611 123 34555555444444431123369999999431 211233355555555
Q ss_pred EEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEEC---CCeEEEEec
Q 001978 142 EMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT---PTRLYSFTG 199 (987)
Q Consensus 142 e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast---~~rly~f~g 199 (987)
.+.++ .+.+++++. .++..|.|.. ..++++++.- +..|.-|.-
T Consensus 87 lyd~~--------~~~i~~~~~--~~~n~i~wsP-----~G~~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 87 LYDVK--------GKKIFSFGT--QPRNTISWSP-----DGRFLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred EEcCc--------ccEeEeecC--CCceEEEECC-----CCCEEEEEEccCCCcEEEEEEC
Confidence 55443 355667764 5688899863 2367777653 234665543
No 134
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=87.65 E-value=4.6 Score=48.16 Aligned_cols=89 Identities=17% Similarity=0.217 Sum_probs=58.5
Q ss_pred HHHHHHcCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCC--chhhHHhhHHHHHh-HChHHHHHHHHcCC-
Q 001978 515 MKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAV--PIDLQYKFAPDLIM-LDAYETVESWMTTN- 590 (987)
Q Consensus 515 ~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~--~~~li~k~~~~Ll~-~~p~~ti~~l~~~~- 590 (987)
.+.+.+-|.=++++.-.-+.++....+.-.....+|.+|.++-.+.+- ...++-+++..|++ ....++|+.--+.+
T Consensus 859 a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~ 938 (1189)
T KOG2041|consen 859 ADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGR 938 (1189)
T ss_pred HHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhccc
Confidence 344555555555555555555555666666677899999998877643 24688899999886 34556676654433
Q ss_pred CCCCCcchhhhhh
Q 001978 591 NLNPRKLIPAMMR 603 (987)
Q Consensus 591 ~ld~~~lip~L~~ 603 (987)
-+|..+|+..+..
T Consensus 939 ~~daarll~qmae 951 (1189)
T KOG2041|consen 939 HLDAARLLSQMAE 951 (1189)
T ss_pred chhHHHHHHHHhH
Confidence 6788887766543
No 135
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=87.59 E-value=8.2 Score=42.91 Aligned_cols=120 Identities=10% Similarity=0.194 Sum_probs=84.3
Q ss_pred hhHHHHHhhcCCCceeEEEEeCCEEEEEe----cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEe
Q 001978 10 VDVLERYAAKGRGVITCMSAGNDVIVLGT----SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATI 84 (987)
Q Consensus 10 ~~~~~~~~~~~~~~i~~~~v~nn~l~~~~----~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~ 84 (987)
|++++...|... .++++..+++--++|. .+|.|+.+|. +-..+..|..| ++.|.-+-++|.|..+.-.+
T Consensus 119 LhTI~t~~~n~~-gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH-----~~~lAalafs~~G~llATAS 192 (391)
T KOG2110|consen 119 LHTIETTPPNPK-GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH-----KGPLAALAFSPDGTLLATAS 192 (391)
T ss_pred ehhhhccCCCcc-ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEec-----CCceeEEEECCCCCEEEEec
Confidence 566666655443 3689999998777775 5699999999 76678888888 46889999999998776666
Q ss_pred ecCCCccEEEEe--cCCCCceeccCCCC---ceEEEEeecCCCCCCCCcceEEEEcCC-CcEEEEEecc
Q 001978 85 VGSGGAETFYTH--AKWSKPRVLSKLKG---LVVNAVAWNRQQITEASTKEIILGTDT-GQLHEMAVDE 147 (987)
Q Consensus 85 ~~~~~g~~~Y~~--~~~~k~k~L~klkg---~~i~sVaw~~~~~~~~st~~iLiGt~~-G~i~e~~i~~ 147 (987)
+ .|.+-=+. ..-.+..... +| +.|-|++|.++ .+||..|++ +.|....|+.
T Consensus 193 e---KGTVIRVf~v~~G~kl~eFR--RG~~~~~IySL~Fs~d-------s~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 193 E---KGTVIRVFSVPEGQKLYEFR--RGTYPVSIYSLSFSPD-------SQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred c---CceEEEEEEcCCccEeeeee--CCceeeEEEEEEECCC-------CCeEEEecCCCeEEEEEecc
Confidence 6 67664322 2222333333 34 57889999943 258888765 8888877754
No 136
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=3.6 Score=48.32 Aligned_cols=132 Identities=13% Similarity=0.158 Sum_probs=93.5
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCcee-eEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYD-IDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 21 ~~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~-~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
...|.|++=.++.+..|...|.|+..|+ .++...+ ...+ .+.|.++-..+.|..+..--+ |...+-+...
T Consensus 260 ~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H-----~qeVCgLkws~d~~~lASGgn---DN~~~Iwd~~ 331 (484)
T KOG0305|consen 260 ASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGH-----RQEVCGLKWSPDGNQLASGGN---DNVVFIWDGL 331 (484)
T ss_pred CceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcc-----cceeeeeEECCCCCeeccCCC---ccceEeccCC
Confidence 3468999999999999999999999999 6666555 3333 478999999999999887766 7777766664
Q ss_pred CCC-ceeccCCCCceEEEEeecCCCCCCCCcceEEE---EcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 99 WSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIIL---GTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 99 ~~k-~k~L~klkg~~i~sVaw~~~~~~~~st~~iLi---Gt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
... ...+...+ -.|+++||+|.+. .+|. ||.++.|..-....+ +.+.. +.. .+.|++|.|.
T Consensus 332 ~~~p~~~~~~H~-aAVKA~awcP~q~------~lLAsGGGs~D~~i~fwn~~~g----~~i~~---vdt-gsQVcsL~Ws 396 (484)
T KOG0305|consen 332 SPEPKFTFTEHT-AAVKALAWCPWQS------GLLATGGGSADRCIKFWNTNTG----ARIDS---VDT-GSQVCSLIWS 396 (484)
T ss_pred CccccEEEeccc-eeeeEeeeCCCcc------CceEEcCCCcccEEEEEEcCCC----cEecc---ccc-CCceeeEEEc
Confidence 443 23344433 4899999997653 2443 678898888776643 11222 222 2569999997
Q ss_pred e
Q 001978 175 T 175 (987)
Q Consensus 175 ~ 175 (987)
+
T Consensus 397 k 397 (484)
T KOG0305|consen 397 K 397 (484)
T ss_pred C
Confidence 4
No 137
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=87.48 E-value=18 Score=39.10 Aligned_cols=155 Identities=9% Similarity=0.112 Sum_probs=94.1
Q ss_pred CCccCcceehhHH--------HHHhhcCCCceeEE-EEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeE
Q 001978 1 MDLMRQVFQVDVL--------ERYAAKGRGVITCM-SAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHK 70 (987)
Q Consensus 1 ~~~~~~~f~~~~~--------~~~~~~~~~~i~~~-~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~ 70 (987)
+||.--||.|.+. .+.++--.+-++|- -+.++.+.-|....+.-.||+ .+..+..+.=| .+-|-.
T Consensus 117 LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH-----~gDV~s 191 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGH-----TGDVMS 191 (343)
T ss_pred cCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCC-----cccEEE
Confidence 4566666666643 22222222234443 344667777888889999999 66666666544 356788
Q ss_pred EEeCC-CCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCc
Q 001978 71 VFVDP-GGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKD 149 (987)
Q Consensus 71 i~lDp-~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~ 149 (987)
+-+-| +|...+.+.- ++..+-+.......++--.-...+|.+|.|.|+. -.|.-|+.+|..=.+.|-..
T Consensus 192 lsl~p~~~ntFvSg~c---D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G------~afatGSDD~tcRlyDlRaD- 261 (343)
T KOG0286|consen 192 LSLSPSDGNTFVSGGC---DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSG------DAFATGSDDATCRLYDLRAD- 261 (343)
T ss_pred EecCCCCCCeEEeccc---ccceeeeeccCcceeEeecccccccceEEEccCC------CeeeecCCCceeEEEeecCC-
Confidence 88888 5654443333 6777777776665544332233589999999532 37999999998777766442
Q ss_pred cccceeeeeeeeCCCCCceeeEEEE
Q 001978 150 KREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 150 ~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
+.+- +|+-+..-.+|+++.|.
T Consensus 262 ---~~~a-~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 262 ---QELA-VYSHDSIICGITSVAFS 282 (343)
T ss_pred ---cEEe-eeccCcccCCceeEEEc
Confidence 2222 24433223457777764
No 138
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=87.39 E-value=18 Score=43.14 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=40.4
Q ss_pred HHHHHHchhhHHHHHHhcCCchh------------HhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 367 MWKVYLDMKEYAAALANCRDPLQ------------RDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 367 ~W~~ll~~~~fe~Al~~~~~~~~------------~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.=.+|..+|+||.|..+|+.... ...-...+|..|...++|.+|+.+|.+..
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33568889999999999974221 12233469999999999999999999876
No 139
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=87.24 E-value=13 Score=43.12 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=83.7
Q ss_pred eeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 001978 24 ITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (987)
Q Consensus 24 i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (987)
.+|+||+. +..++|-..|.|+.+-| +.+..++..+..- .++|+.|-..|.|.++.++=. +++.--+...+.
T Consensus 446 ~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h---~a~iT~vaySpd~~yla~~Da---~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 446 SSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEH---RAAITDVAYSPDGAYLAAGDA---SRKVVLYDVASR 519 (603)
T ss_pred cceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecc---cCCceEEEECCCCcEEEEecc---CCcEEEEEcccC
Confidence 36667665 47899999999999999 4343444332211 368999999999998887765 677755555444
Q ss_pred CceeccC--CCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 101 KPRVLSK--LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 101 k~k~L~k--lkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
.++ ++. +.--.|.||||+|.+ ..+--|+-+-.|+.+.++. +.++++-. .-. +..|.++.|..
T Consensus 520 ~~~-~~~w~FHtakI~~~aWsP~n------~~vATGSlDt~Viiysv~k---P~~~i~ik-nAH--~~gVn~v~wld 583 (603)
T KOG0318|consen 520 EVK-TNRWAFHTAKINCVAWSPNN------KLVATGSLDTNVIIYSVKK---PAKHIIIK-NAH--LGGVNSVAWLD 583 (603)
T ss_pred cee-cceeeeeeeeEEEEEeCCCc------eEEEeccccceEEEEEccC---hhhheEec-ccc--ccCceeEEEec
Confidence 442 121 233479999999542 2566666677777777643 33332211 111 23388888863
No 140
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.04 E-value=9.2 Score=38.52 Aligned_cols=97 Identities=15% Similarity=0.128 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCc----ceeeeh
Q 001978 617 VIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKR----MRACVH 692 (987)
Q Consensus 617 ~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~----~~~~v~ 692 (987)
.+.|+..+....-...+.++..++.+.++.+....|..||+..- ..=...-|..++.-.+. .+-+.-
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V---------i~DSk~lA~~LLs~~~~~~~~~Ql~lD 83 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV---------IPDSKPLACQLLSLGNQYPPAYQLGLD 83 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc---------cCCcHHHHHHHHHhHccChHHHHHHHH
Confidence 56688877766656678899999999999776678888888761 12234556666544333 455666
Q ss_pred hhhccc-cHHHHHHHHHh-cCHHHHHHHhhcc
Q 001978 693 IYGMMS-MHEEAVALALQ-VDPELAMAEADKV 722 (987)
Q Consensus 693 L~~~~g-~~~eAl~l~l~-~di~lA~~~~~~~ 722 (987)
.+.|+| .|++-+++++. +++-.|..++.+.
T Consensus 84 MLkRL~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 84 MLKRLGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 789999 88999998888 8899999999653
No 141
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.95 E-value=77 Score=37.97 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=68.4
Q ss_pred eeEEEEeCC----EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 24 ITCMSAGND----VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 24 i~~~~v~nn----~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
|.|+.--.. .|+-|-.+.++-.||. +..=|+..+=+ ...|..++..|.=..+|.++. ||.+--+|.+
T Consensus 186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH-----t~Nvs~v~fhp~lpiiisgsE---DGTvriWhs~ 257 (794)
T KOG0276|consen 186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH-----TNNVSFVFFHPELPIIISGSE---DGTVRIWNSK 257 (794)
T ss_pred cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc-----cccceEEEecCCCcEEEEecC---CccEEEecCc
Confidence 556554332 4555666777888898 43334444433 357899999999887777777 9999999886
Q ss_pred CCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEE
Q 001978 99 WSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHE 142 (987)
Q Consensus 99 ~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e 142 (987)
.-+. +.|. +..-.|=||+=.+ .++.|++|-.+|.|..
T Consensus 258 Ty~lE~tLn-~gleRvW~I~~~k------~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 258 TYKLEKTLN-YGLERVWCIAAHK------GDGKIAVGFDEGSVTV 295 (794)
T ss_pred ceehhhhhh-cCCceEEEEeecC------CCCeEEEeccCCcEEE
Confidence 6432 3333 2233555555542 3567999999997764
No 142
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=86.94 E-value=18 Score=43.38 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=43.2
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++.+.|+|++||++.... .++..+....|+.|+..|++++|...|....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li 65 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI 65 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3578889999999997642 3577899999999999999999999998876
No 143
>PHA02926 zinc finger-like protein; Provisional
Probab=86.88 E-value=0.95 Score=46.66 Aligned_cols=41 Identities=22% Similarity=0.622 Sum_probs=28.1
Q ss_pred cccccccccchhhhhcccc-cccccccCCCCCCCCEEEE-cCCChhHHHhHHHHH
Q 001978 831 DRDEDCGVCRRKILVAGRD-YRMARGYASVGPMAPFYVF-PCGHAFHAQCLIAHV 883 (987)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~-~~~~~~~~~~~~~~~fvvF-pCgH~fH~~CL~~~~ 883 (987)
+.+..|++|-..++..... .| .|-+. +|+|+|+.+|+..-.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eR------------rFGIL~~CnHsFCl~CIr~Wr 210 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDR------------YFGLLDSCNHIFCITCINIWH 210 (242)
T ss_pred cCCCCCccCccccccccccccc------------cccccCCCCchHHHHHHHHHH
Confidence 3567899999887652100 02 34455 699999999998764
No 144
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=86.86 E-value=29 Score=38.69 Aligned_cols=149 Identities=11% Similarity=0.073 Sum_probs=90.4
Q ss_pred eCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC
Q 001978 30 GNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL 108 (987)
Q Consensus 30 ~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl 108 (987)
.++.+.=+....+|.-+|+ .+-.+..++-| .+=|+-+-+...|.-+..|++ +...-.+.....+.+.+-+-
T Consensus 204 ~gd~ilS~srD~tik~We~~tg~cv~t~~~h-----~ewvr~v~v~~DGti~As~s~---dqtl~vW~~~t~~~k~~lR~ 275 (406)
T KOG0295|consen 204 LGDHILSCSRDNTIKAWECDTGYCVKTFPGH-----SEWVRMVRVNQDGTIIASCSN---DQTLRVWVVATKQCKAELRE 275 (406)
T ss_pred cCCeeeecccccceeEEecccceeEEeccCc-----hHhEEEEEecCCeeEEEecCC---CceEEEEEeccchhhhhhhc
Confidence 4567777778889999999 55556555544 234444444445655555555 56666666666656666555
Q ss_pred CCceEEEEeecCCCCC--------CCCcceEEE-EcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccC
Q 001978 109 KGLVVNAVAWNRQQIT--------EASTKEIIL-GTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLS 179 (987)
Q Consensus 109 kg~~i~sVaw~~~~~~--------~~st~~iLi-Gt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~ 179 (987)
.-++|+||+|-|.... +++.+++|. |..|+.|=.-.+.. .+.|+.|.+-..=|.|+.+..
T Consensus 276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-------g~cL~tL~ghdnwVr~~af~p---- 344 (406)
T KOG0295|consen 276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-------GMCLFTLVGHDNWVRGVAFSP---- 344 (406)
T ss_pred cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-------CeEEEEEecccceeeeeEEcC----
Confidence 6689999999865321 112223443 45566555554443 256677764334599999863
Q ss_pred CCceEEEEEECCCeEEEEe
Q 001978 180 NGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 180 ~~~~~~i~ast~~rly~f~ 198 (987)
..+|++-++.++.|--|.
T Consensus 345 -~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 345 -GGKYILSCADDKTLRVWD 362 (406)
T ss_pred -CCeEEEEEecCCcEEEEE
Confidence 237888877766555553
No 145
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=86.83 E-value=0.35 Score=38.11 Aligned_cols=32 Identities=34% Similarity=0.859 Sum_probs=24.8
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCCh-hHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHA-FHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~-fH~~CL~~~~ 883 (987)
+..|.+|.... + ..+++||||. |...|+.+..
T Consensus 2 ~~~C~iC~~~~-------~------------~~~~~pCgH~~~C~~C~~~~~ 34 (50)
T PF13920_consen 2 DEECPICFENP-------R------------DVVLLPCGHLCFCEECAERLL 34 (50)
T ss_dssp HSB-TTTSSSB-------S------------SEEEETTCEEEEEHHHHHHHH
T ss_pred cCCCccCCccC-------C------------ceEEeCCCChHHHHHHhHHhc
Confidence 45788888651 2 6788999999 9999998765
No 146
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=86.68 E-value=0.39 Score=38.19 Aligned_cols=35 Identities=29% Similarity=0.659 Sum_probs=28.7
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEc-CCChhHHHhHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFP-CGHAFHAQCLIAH 882 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFp-CgH~fH~~CL~~~ 882 (987)
.+.+|.+||+++... . +.||=| ||-.||++|-...
T Consensus 4 ~~~~C~~Cg~~~~~~----d------------DiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDG----D------------DIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred cCccChhhCCcccCC----C------------CEEECCCCCCcccHHHHhhC
Confidence 357899999999741 2 788888 9999999998754
No 147
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=86.64 E-value=2.2 Score=44.36 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=54.7
Q ss_pred CCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhh-hccccHHHHHHHH
Q 001978 629 HNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIY-GMMSMHEEAVALA 707 (987)
Q Consensus 629 ~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~-~~~g~~~eAl~l~ 707 (987)
....+.+-+.+++.|++.+.-+.+-+.+-.- +. ...|++.|+++|++++++++.+|+| .-+++|--=+.-+
T Consensus 18 ~~lpp~v~k~lv~~y~~~~~~~~lE~lI~~L------D~--~~LDidq~i~lC~~~~LydalIYv~n~~l~DYvTPL~~l 89 (196)
T PF12816_consen 18 KSLPPEVFKALVEHYASKGRLERLEQLILHL------DP--SSLDIDQVIKLCKKHGLYDALIYVWNRALNDYVTPLEEL 89 (196)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhC------CH--HhcCHHHHHHHHHHCCCCCeeeeeeeccccCCcHHHHHH
Confidence 3457889999999998866434444444443 11 4689999999999999999999999 4559987766666
Q ss_pred Hh
Q 001978 708 LQ 709 (987)
Q Consensus 708 l~ 709 (987)
+.
T Consensus 90 l~ 91 (196)
T PF12816_consen 90 LE 91 (196)
T ss_pred HH
Confidence 54
No 148
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=86.35 E-value=11 Score=42.84 Aligned_cols=150 Identities=14% Similarity=0.108 Sum_probs=89.0
Q ss_pred EEEEEecCCeEEEEeCCCCCc-eeeEcCCC--CCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC--CCCceeccC
Q 001978 33 VIVLGTSKGWLIRHDFGAGDS-YDIDLSAG--RPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK--WSKPRVLSK 107 (987)
Q Consensus 33 ~l~~~~~~g~l~ridl~~~~~-~~~~l~~~--~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~--~~k~k~L~k 107 (987)
-|.-|-..++|-.+|++.... ..+..|+. .+-...|..+...|.-.-++.+.. .+|...-+..+ ..++....+
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~--dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG--DDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec--CCCeEEEEEcCCCCCCCccccc
Confidence 345555678899999922221 22222221 222468888888888777776654 25555555555 445555554
Q ss_pred CCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEE
Q 001978 108 LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVM 187 (987)
Q Consensus 108 lkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ 187 (987)
-.+..|.||+||+.. ..-+..|+.+|.|....+-.- .+.++.+.+-...|..|+|.. ....++.-
T Consensus 270 ah~~~vn~~~fnp~~-----~~ilAT~S~D~tV~LwDlRnL------~~~lh~~e~H~dev~~V~WSP----h~etvLAS 334 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFN-----EFILATGSADKTVALWDLRNL------NKPLHTFEGHEDEVFQVEWSP----HNETVLAS 334 (422)
T ss_pred ccCCceeEEEeCCCC-----CceEEeccCCCcEEEeechhc------ccCceeccCCCcceEEEEeCC----CCCceeEe
Confidence 456799999999543 123444567898887655221 124556654335699999973 22234444
Q ss_pred EECCCeEEEEec
Q 001978 188 AVTPTRLYSFTG 199 (987)
Q Consensus 188 ast~~rly~f~g 199 (987)
..+..|+--|.-
T Consensus 335 Sg~D~rl~vWDl 346 (422)
T KOG0264|consen 335 SGTDRRLNVWDL 346 (422)
T ss_pred cccCCcEEEEec
Confidence 345788888863
No 149
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=86.34 E-value=4 Score=45.86 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=64.0
Q ss_pred CceeEEEEeCCEE--EEEecCCeEEEEeCCCCCc-eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 22 GVITCMSAGNDVI--VLGTSKGWLIRHDFGAGDS-YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 22 ~~i~~~~v~nn~l--~~~~~~g~l~ridl~~~~~-~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
+.||++.++-+-. .--....++-.||+...++ .-+.-+-... ..-.+++-+.|.|.+++.-+- +|.+|.++..
T Consensus 342 g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~-asDwtrvvfSpd~~YvaAGS~---dgsv~iW~v~ 417 (459)
T KOG0288|consen 342 GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC-ASDWTRVVFSPDGSYVAAGSA---DGSVYIWSVF 417 (459)
T ss_pred cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc-ccccceeEECCCCceeeeccC---CCcEEEEEcc
Confidence 4677777765533 2224567888888833332 2222221121 234889999999999998776 8999999998
Q ss_pred CCCceeccCCCCce--EEEEeecC
Q 001978 99 WSKPRVLSKLKGLV--VNAVAWNR 120 (987)
Q Consensus 99 ~~k~k~L~klkg~~--i~sVaw~~ 120 (987)
..|.-..-+..+.. |+|++|++
T Consensus 418 tgKlE~~l~~s~s~~aI~s~~W~~ 441 (459)
T KOG0288|consen 418 TGKLEKVLSLSTSNAAITSLSWNP 441 (459)
T ss_pred CceEEEEeccCCCCcceEEEEEcC
Confidence 88765544456666 99999993
No 150
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=86.23 E-value=15 Score=45.50 Aligned_cols=48 Identities=19% Similarity=0.104 Sum_probs=26.0
Q ss_pred HHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
++.+|++++|+...+.. ......+...|..++..|+|++|...|.+..
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 392 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKAL 392 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34566666666665421 1122344555666666666666666665543
No 151
>PRK05137 tolB translocation protein TolB; Provisional
Probab=85.67 E-value=29 Score=40.79 Aligned_cols=143 Identities=10% Similarity=0.140 Sum_probs=82.9
Q ss_pred CCEEEEEecCC------eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCcee
Q 001978 31 NDVIVLGTSKG------WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRV 104 (987)
Q Consensus 31 nn~l~~~~~~g------~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~ 104 (987)
..+.|+.-.+| .|+.+|.+..+...+.-+ ...+......|.|.+++..+...+++..|-++....+.+.
T Consensus 166 ~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~-----~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~ 240 (435)
T PRK05137 166 TRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDG-----SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL 240 (435)
T ss_pred CeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecC-----CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE
Confidence 34445544444 788888844433333211 3567888889999998877653334566666666666677
Q ss_pred ccCCCCceEEEEeecCCCCCCCCcceEEEEc-CCC--cEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCC
Q 001978 105 LSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTG--QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNG 181 (987)
Q Consensus 105 L~klkg~~i~sVaw~~~~~~~~st~~iLiGt-~~G--~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~ 181 (987)
+..++| .+.+.+|.++ ...+++.. .+| .||...+..+ ..+++..- ++..+...|. .+
T Consensus 241 l~~~~g-~~~~~~~SPD------G~~la~~~~~~g~~~Iy~~d~~~~-----~~~~Lt~~---~~~~~~~~~s-----pD 300 (435)
T PRK05137 241 VGNFPG-MTFAPRFSPD------GRKVVMSLSQGGNTDIYTMDLRSG-----TTTRLTDS---PAIDTSPSYS-----PD 300 (435)
T ss_pred eecCCC-cccCcEECCC------CCEEEEEEecCCCceEEEEECCCC-----ceEEccCC---CCccCceeEc-----CC
Confidence 877766 5668899843 22565543 344 4887776543 13343222 2334555664 23
Q ss_pred ceEEEEEECC---CeEEEEe
Q 001978 182 TRYYVMAVTP---TRLYSFT 198 (987)
Q Consensus 182 ~~~~i~ast~---~rly~f~ 198 (987)
.+.+++++.. ..+|.+.
T Consensus 301 G~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 301 GSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred CCEEEEEECCCCCCeEEEEE
Confidence 3677776642 3577654
No 152
>PRK03629 tolB translocation protein TolB; Provisional
Probab=84.98 E-value=38 Score=39.77 Aligned_cols=143 Identities=13% Similarity=0.135 Sum_probs=82.5
Q ss_pred eCCEEEEEecCC-----eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCcee
Q 001978 30 GNDVIVLGTSKG-----WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRV 104 (987)
Q Consensus 30 ~nn~l~~~~~~g-----~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~ 104 (987)
.+++.|+....+ .|...|.+..+...+ .. +...+...-.+|.|.+++..+...+....|.++....+.+.
T Consensus 163 ~~riayv~~~~~~~~~~~l~~~d~dg~~~~~l--t~---~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~ 237 (429)
T PRK03629 163 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVV--HR---SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ 237 (429)
T ss_pred CCeEEEEEeeCCCCcceeEEEEcCCCCCCEEe--ec---CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE
Confidence 355556655433 688888843333222 21 13567888889999998876642223445555555556777
Q ss_pred ccCCCCceEEEEeecCCCCCCCCcceEEEE-cCCC--cEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCC
Q 001978 105 LSKLKGLVVNAVAWNRQQITEASTKEIILG-TDTG--QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNG 181 (987)
Q Consensus 105 L~klkg~~i~sVaw~~~~~~~~st~~iLiG-t~~G--~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~ 181 (987)
|..++|. +.+++|.++. ..+++. +.+| .||...++.+ .++++..- +..+.+..|. .+
T Consensus 238 l~~~~~~-~~~~~~SPDG------~~La~~~~~~g~~~I~~~d~~tg-----~~~~lt~~---~~~~~~~~wS-----PD 297 (429)
T PRK03629 238 VASFPRH-NGAPAFSPDG------SKLAFALSKTGSLNLYVMDLASG-----QIRQVTDG---RSNNTEPTWF-----PD 297 (429)
T ss_pred ccCCCCC-cCCeEECCCC------CEEEEEEcCCCCcEEEEEECCCC-----CEEEccCC---CCCcCceEEC-----CC
Confidence 7777764 4578999531 245544 4455 4777766543 13443222 2346677775 23
Q ss_pred ceEEEEEECC---CeEEEE
Q 001978 182 TRYYVMAVTP---TRLYSF 197 (987)
Q Consensus 182 ~~~~i~ast~---~rly~f 197 (987)
.+.+++++.. .++|.+
T Consensus 298 G~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 298 SQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred CCEEEEEeCCCCCceEEEE
Confidence 3677776653 367755
No 153
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=84.93 E-value=1.8 Score=46.46 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=54.0
Q ss_pred CcceehhHHHHHhhcCCCceeEEEEeCC---------EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeC
Q 001978 5 RQVFQVDVLERYAAKGRGVITCMSAGND---------VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVD 74 (987)
Q Consensus 5 ~~~f~~~~~~~~~~~~~~~i~~~~v~nn---------~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lD 74 (987)
|.-| +++......+-.+.||||+.=.+ .|++||++|.||.+|- .-.-..++.+|-.+. .-.+.+.| |
T Consensus 161 ~~~f-i~~~k~~pl~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~-d 237 (257)
T PF14779_consen 161 REAF-IERYKDSPLKRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQY-D 237 (257)
T ss_pred HHHH-HHHHhcCCcccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeee-e
Confidence 3345 45555555566678999997544 7899999999999999 444466788873211 01122222 2
Q ss_pred CCCCeEEEEeecCCCccEEEE
Q 001978 75 PGGSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 75 p~G~hlli~~~~~~~g~~~Y~ 95 (987)
....-++|++. +|..|-+
T Consensus 238 evdyRI~Va~R---dg~iy~i 255 (257)
T PF14779_consen 238 EVDYRIVVACR---DGKIYTI 255 (257)
T ss_pred ccceEEEEEeC---CCEEEEE
Confidence 22344788888 8888755
No 154
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=84.90 E-value=0.72 Score=46.97 Aligned_cols=35 Identities=31% Similarity=0.642 Sum_probs=26.7
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
....-.|.+|...+.. + ++-+|||.|+..|+.+..
T Consensus 15 ~~~~~~CpICld~~~d------------------P-VvT~CGH~FC~~CI~~wl 49 (193)
T PLN03208 15 SGGDFDCNICLDQVRD------------------P-VVTLCGHLFCWPCIHKWT 49 (193)
T ss_pred CCCccCCccCCCcCCC------------------c-EEcCCCchhHHHHHHHHH
Confidence 3345689999876433 4 557999999999998764
No 155
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=84.75 E-value=4.7 Score=46.26 Aligned_cols=151 Identities=14% Similarity=0.133 Sum_probs=101.6
Q ss_pred hHHHHHhhcCCCceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC
Q 001978 11 DVLERYAAKGRGVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS 87 (987)
Q Consensus 11 ~~~~~~~~~~~~~i~~~~v~--nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~ 87 (987)
+++.|+|+--.|-++|+.++ .-.||-|--+++|-.||+ ..-++.+.++. +.|-.+---|+|..++|-|.
T Consensus 541 q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~------SQIfSLg~cP~~dWlavGMe-- 612 (705)
T KOG0639|consen 541 QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS------SQIFSLGYCPTGDWLAVGME-- 612 (705)
T ss_pred ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh------hhheecccCCCccceeeecc--
Confidence 35667777777889999999 558888888889999999 66666666654 44555556899999999999
Q ss_pred CCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCc
Q 001978 88 GGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEA 167 (987)
Q Consensus 88 ~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~ 167 (987)
++.+..+|..-+....|. ++.--|-|+-|. ..|...+-|-+-.++-+.= -.|=..+|+.++. ++
T Consensus 613 -ns~vevlh~skp~kyqlh-lheScVLSlKFa-------~cGkwfvStGkDnlLnawr------tPyGasiFqskE~-Ss 676 (705)
T KOG0639|consen 613 -NSNVEVLHTSKPEKYQLH-LHESCVLSLKFA-------YCGKWFVSTGKDNLLNAWR------TPYGASIFQSKES-SS 676 (705)
T ss_pred -cCcEEEEecCCccceeec-ccccEEEEEEec-------ccCceeeecCchhhhhhcc------Cccccceeecccc-Cc
Confidence 888888887666555665 567788888887 2345666554322222211 1223456777764 56
Q ss_pred eeeEEEEeeccCCCceEEEEEEC
Q 001978 168 FMGLQMETASLSNGTRYYVMAVT 190 (987)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast 190 (987)
|++--+.. +.++||--|.
T Consensus 677 VlsCDIS~-----ddkyIVTGSG 694 (705)
T KOG0639|consen 677 VLSCDISF-----DDKYIVTGSG 694 (705)
T ss_pred ceeeeecc-----CceEEEecCC
Confidence 87666542 2356665444
No 156
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=84.70 E-value=1.1e+02 Score=37.61 Aligned_cols=291 Identities=13% Similarity=0.096 Sum_probs=140.5
Q ss_pred cCcceehh--HHHHHhhcCCCceeEEEEeCCEEEEEe--cCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCe
Q 001978 4 MRQVFQVD--VLERYAAKGRGVITCMSAGNDVIVLGT--SKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSH 79 (987)
Q Consensus 4 ~~~~f~~~--~~~~~~~~~~~~i~~~~v~nn~l~~~~--~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~h 79 (987)
+-+||.++ .+--.|.--..+||++.+..-=++++. .+|.|+.||+-++. ..+.+. +-.+.|++.|.-. |.-
T Consensus 88 sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~-Gl~rL~---GHkd~iT~~~F~~-~~~ 162 (888)
T KOG0306|consen 88 SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE-GLFRLR---GHKDSITQALFLN-GDS 162 (888)
T ss_pred eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce-eeEEee---cchHHHhHHhccC-CCe
Confidence 34566665 333333222346888888766555554 66899999993232 234443 1146788887754 555
Q ss_pred EEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEe--ccCccccceeee
Q 001978 80 CIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAV--DEKDKREKYIKL 157 (987)
Q Consensus 80 lli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i--~~~~~~e~~~k~ 157 (987)
.+|++. .|+..=+|+..........=...-.|=+.+..+ ...+.|+.++.+-..++ +..+.++.....
T Consensus 163 ~lvS~s--KDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--------~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s 232 (888)
T KOG0306|consen 163 FLVSVS--KDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--------KLLVTAGTDSELKVWELAFEDDEKETNRYIS 232 (888)
T ss_pred EEEEec--cCceEEEEecccceeeeEEecccceEEEEEEec--------ceEEEEecCCceEEEEeecccccccccccce
Confidence 555543 166666666655432221101223666777762 25777777755444444 332211111111
Q ss_pred eeeeCCCCCceeeEEEEeeccCCCceEEEEEEC-CCeEEEEecCCchHHHHhhhhc------------cc--ccc-cccC
Q 001978 158 LFELNELPEAFMGLQMETASLSNGTRYYVMAVT-PTRLYSFTGFGSLDTVFASYLD------------RA--VHF-MELP 221 (987)
Q Consensus 158 v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast-~~rly~f~g~~~l~~lf~~~~~------------~~--~~~-~elp 221 (987)
+. -.|..... +..|-+-++++ +.|...+.|.+.+..+|.-..+ +. ... .| +
T Consensus 233 ---~~-----~~G~~~rq----sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e-~ 299 (888)
T KOG0306|consen 233 ---TK-----LRGTFIRQ----SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEE-N 299 (888)
T ss_pred ---ee-----ccceeeec----cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccc-c
Confidence 11 22333321 22355555555 5566666776554444431110 00 000 11 1
Q ss_pred C-CcCCC---cce---eeeccCCCceEEEeecCceEEEEeecCCCCCCC-CCCC-ccccccccccccccCCCCCCCCCcc
Q 001978 222 G-EILNS---ELH---FFIKQRRAVHFAWLSGAGIYHGGLNFGAQRSSP-NGDE-NFVENKALLSYSKLSEGAEAVKPGS 292 (987)
Q Consensus 222 ~-~~~~s---~l~---~~~~~~~~~~faW~t~~gi~~g~i~~~~~~~~~-~~~~-~~~~~~~l~~~~~l~~~~~~~~p~s 292 (987)
. +...+ ++. ...-...-.+|.|+.+.|.----+....++.+- ..+. ....+. -.....+.-+++...+.+
T Consensus 300 ~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~-~~~~~~i~~~GHR~dVRs 378 (888)
T KOG0306|consen 300 EDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPE-ADRTSNIEIGGHRSDVRS 378 (888)
T ss_pred ccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcc-ccccceeeeccchhheeE
Confidence 1 11111 000 001112356889988887651111111111100 0000 000000 000111222334456899
Q ss_pred cccCCceEEEEEC--CEEEEEecCCCceEEEEE
Q 001978 293 MAVSEYHFLLLMG--NKVKVVNRISEQIIEELQ 323 (987)
Q Consensus 293 i~lT~~h~llL~~--~~l~vvn~l~~~~v~~~~ 323 (987)
++++.-|++++.+ +.|++-|+-+.+.+-..+
T Consensus 379 l~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~ 411 (888)
T KOG0306|consen 379 LCVSSDSILLASGAGESIKIWNRDTLKCIRTIT 411 (888)
T ss_pred EEeecCceeeeecCCCcEEEEEccCcceeEEec
Confidence 9999999999986 999999999998876543
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=84.16 E-value=12 Score=43.19 Aligned_cols=120 Identities=9% Similarity=0.173 Sum_probs=70.4
Q ss_pred EEEecCCeEEEEeC-CCCCceee-EcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe-cCCC-CceeccCCCC
Q 001978 35 VLGTSKGWLIRHDF-GAGDSYDI-DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH-AKWS-KPRVLSKLKG 110 (987)
Q Consensus 35 ~~~~~~g~l~ridl-~~~~~~~~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~-~~~~-k~k~L~klkg 110 (987)
.++-.+|.|..||. ..+..... +.| ..+-..|.+.|...-+|++.- --...|+. .++. -.+.|. -.
T Consensus 181 ~~asd~G~VtlwDv~g~sp~~~~~~~H-----sAP~~gicfspsne~l~vsVG---~Dkki~~yD~~s~~s~~~l~--y~ 250 (673)
T KOG4378|consen 181 SIASDKGAVTLWDVQGMSPIFHASEAH-----SAPCRGICFSPSNEALLVSVG---YDKKINIYDIRSQASTDRLT--YS 250 (673)
T ss_pred EeeccCCeEEEEeccCCCcccchhhhc-----cCCcCcceecCCccceEEEec---ccceEEEeecccccccceee--ec
Confidence 45556677777777 33332222 122 246678999999988888764 22333433 2222 123344 35
Q ss_pred ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEee
Q 001978 111 LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (987)
Q Consensus 111 ~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~ 176 (987)
++.++|||.+.- --..+|+.+|.||.+.+-..+ .-++.+ ...+ .+|+.|.|...
T Consensus 251 ~Plstvaf~~~G------~~L~aG~s~G~~i~YD~R~~k---~Pv~v~-sah~--~sVt~vafq~s 304 (673)
T KOG4378|consen 251 HPLSTVAFSECG------TYLCAGNSKGELIAYDMRSTK---APVAVR-SAHD--ASVTRVAFQPS 304 (673)
T ss_pred CCcceeeecCCc------eEEEeecCCceEEEEecccCC---CCceEe-eecc--cceeEEEeeec
Confidence 789999998321 145668999999999886542 223333 2232 34888888653
No 158
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=84.07 E-value=16 Score=40.78 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=62.0
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEE
Q 001978 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMA 144 (987)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~ 144 (987)
.+.|..+-..|+|.++..-+- |..+-.+......+...-|-..+=|-||+|.|+. ..|.-|+.+|.|....
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsG---D~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg------k~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSG---DTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG------KKIASGSKDGSIRLWD 185 (480)
T ss_pred CCcEEEEEecCCCceEEecCC---CceEEeeccCCCCcceeecCCccEEEEEEECCCc------chhhccccCCeEEEec
Confidence 478999999999998875432 5555566655443333222233579999999542 3688899999987754
Q ss_pred eccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 145 VDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 145 i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
-+.+ +++-+. |++-...|+++.|++.-
T Consensus 186 pktg---~~~g~~---l~gH~K~It~Lawep~h 212 (480)
T KOG0271|consen 186 PKTG---QQIGRA---LRGHKKWITALAWEPLH 212 (480)
T ss_pred CCCC---Cccccc---ccCcccceeEEeecccc
Confidence 3332 222222 33212459999998754
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=84.03 E-value=2 Score=37.61 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=29.7
Q ss_pred HHHchhhHHHHHHhcCCc---hhHhHHHHHHHHHHHhcCCHHHHHHHHHh
Q 001978 370 VYLDMKEYAAALANCRDP---LQRDQVYLVQAEAAFATKDFHRAASFYAK 416 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~---~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~ 416 (987)
.|+..|+|++|+.+++.. ..-..+....|.-++..|+|++|.+.|.+
T Consensus 34 ~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 34 CYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 466777777777777541 11234555667777777777777777654
No 160
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=83.89 E-value=74 Score=35.60 Aligned_cols=161 Identities=12% Similarity=0.099 Sum_probs=88.2
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceee-EcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE-Eec
Q 001978 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDI-DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY-THA 97 (987)
Q Consensus 21 ~~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y-~~~ 97 (987)
++++++++.-++.+++|.. +.|+.+++ ..+..... ..+. ...+..+.. .|..+++..-- .|-.+| +..
T Consensus 88 ~g~V~ai~~~~~~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~----~~~i~sl~~--~~~~I~vgD~~--~sv~~~~~~~ 158 (321)
T PF03178_consen 88 KGPVTAICSFNGRLVVAVG-NKLYVYDLDNSKTLLKKAFYDS----PFYITSLSV--FKNYILVGDAM--KSVSLLRYDE 158 (321)
T ss_dssp SS-EEEEEEETTEEEEEET-TEEEEEEEETTSSEEEEEEE-B----SSSEEEEEE--ETTEEEEEESS--SSEEEEEEET
T ss_pred cCcceEhhhhCCEEEEeec-CEEEEEEccCcccchhhheecc----eEEEEEEec--cccEEEEEEcc--cCEEEEEEEc
Confidence 4679999999999777765 59999999 44423222 2211 124555544 36666665431 233333 334
Q ss_pred CCCCceeccCC-CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCc---cccc-eeeee--eeeCCCCCceee
Q 001978 98 KWSKPRVLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKD---KREK-YIKLL--FELNELPEAFMG 170 (987)
Q Consensus 98 ~~~k~k~L~kl-kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~---~~e~-~~k~v--~~l~~~~~~I~g 170 (987)
...+...+.+- ....++++++-.+ . . .+++|+..|.|+-....+.. ...+ .+..+ |.++ ..|+.
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d----~-~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg---~~v~~ 229 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVD----E-D-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLG---DIVNS 229 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-S----S-S-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-S---S-EEE
T ss_pred cCCEEEEEEecCCCccEEEEEEecC----C-c-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECC---Cccce
Confidence 34445555542 2467899988721 1 1 79999999999988887531 1222 34333 5566 45888
Q ss_pred EEEEee-cc--CCC---ceEEEEEECCCeEEEEec
Q 001978 171 LQMETA-SL--SNG---TRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 171 i~~~~~-~~--~~~---~~~~i~ast~~rly~f~g 199 (987)
+.-..+ |. +.+ ...++++|..+.++.+..
T Consensus 230 ~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 230 FRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp EEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred EEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 843332 21 111 246888888888987766
No 161
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=83.84 E-value=9.3 Score=43.71 Aligned_cols=94 Identities=19% Similarity=0.225 Sum_probs=78.3
Q ss_pred CCCceeEEEEeCCEEEEEecCC-eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 20 GRGVITCMSAGNDVIVLGTSKG-WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 20 ~~~~i~~~~v~nn~l~~~~~~g-~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
+...-..+.+.++-.++|+..| .|-.+|....++.+++-+. +.|..+-++|.|..++++-+ .++.+-+...
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l-----g~I~av~vs~dGK~~vvaNd---r~el~vidid 431 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL-----GNIEAVKVSPDGKKVVVAND---RFELWVIDID 431 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc-----cceEEEEEcCCCcEEEEEcC---ceEEEEEEec
Confidence 3344577888899999999999 8888899777788776653 67999999999999999888 8999999988
Q ss_pred CCCceeccCCCCceEEEEeecCC
Q 001978 99 WSKPRVLSKLKGLVVNAVAWNRQ 121 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~sVaw~~~ 121 (987)
.-+++.+.|-.--.|+-++|.+.
T Consensus 432 ngnv~~idkS~~~lItdf~~~~n 454 (668)
T COG4946 432 NGNVRLIDKSEYGLITDFDWHPN 454 (668)
T ss_pred CCCeeEecccccceeEEEEEcCC
Confidence 88899888766568999999943
No 162
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=83.82 E-value=17 Score=39.51 Aligned_cols=112 Identities=12% Similarity=0.118 Sum_probs=72.9
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEE
Q 001978 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMA 144 (987)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~ 144 (987)
.+.|..+-.+|++.+|++++= +|..-.........+..-+ .+.++.+.||-++ .+++.|+-+|.|-.+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssW---DgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-------~~~~~G~~dg~vr~~D 81 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSW---DGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-------STIVTGGLDGQVRRYD 81 (323)
T ss_pred hhceeeEEEcCcCCcEEEEec---cCcEEEEeccchhhhhhee-cCCceeeeeccCC-------ceEEEeccCceEEEEE
Confidence 578999999999999999987 7877444333333344333 4679999999843 2799999999999998
Q ss_pred eccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEecC
Q 001978 145 VDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTGF 200 (987)
Q Consensus 145 i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g~ 200 (987)
++.+.. .++..-.++|++|..... .+.+|-.+=+.++-.|+++
T Consensus 82 ln~~~~--------~~igth~~~i~ci~~~~~-----~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 82 LNTGNE--------DQIGTHDEGIRCIEYSYE-----VGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred ecCCcc--------eeeccCCCceEEEEeecc-----CCeEEEcccCccEEEEecc
Confidence 877521 122211256888887521 1233322225556556654
No 163
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=83.53 E-value=0.64 Score=35.42 Aligned_cols=21 Identities=43% Similarity=0.910 Sum_probs=15.0
Q ss_pred CEEEEcCCChhHHHhHHHHHh
Q 001978 864 PFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 864 ~fvvFpCgH~fH~~CL~~~~~ 884 (987)
+=++-+|||+|=.+|+.+-..
T Consensus 13 ~P~~L~CGH~~c~~cl~~l~~ 33 (43)
T PF13445_consen 13 PPMVLPCGHVFCKDCLQKLSK 33 (43)
T ss_dssp -EEE-SSS-EEEHHHHHHHHH
T ss_pred CCEEEeCccHHHHHHHHHHHh
Confidence 456688999999999987654
No 164
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=83.48 E-value=26 Score=37.44 Aligned_cols=136 Identities=12% Similarity=0.093 Sum_probs=85.5
Q ss_pred HHhhcCCCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 15 RYAAKGRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 15 ~~~~~~~~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
++++.+...|+-= -.|++.++....|.|-.+.. .=..++.|.-+. +--..|-+||.|+|+.+-+. +..+-
T Consensus 144 ~~~~~e~ne~~w~-~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~-----snCicI~f~p~GryfA~GsA---DAlvS 214 (313)
T KOG1407|consen 144 EQFKFEVNEISWN-NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP-----SNCICIEFDPDGRYFATGSA---DALVS 214 (313)
T ss_pred hcccceeeeeeec-CCCCEEEEecCCceEEEEeccccccccccccCC-----cceEEEEECCCCceEeeccc---cceee
Confidence 3444444443333 56777777777799988876 333466676663 23467888999999998766 56554
Q ss_pred EEecCCC-CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEE
Q 001978 94 YTHAKWS-KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQ 172 (987)
Q Consensus 94 Y~~~~~~-k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~ 172 (987)
-+..+-- =.|.++++ +.+|+.+.|+.+ .+-+--|+.+-.|=.+.++.+ .++++++- .+|--.+.
T Consensus 215 LWD~~ELiC~R~isRl-dwpVRTlSFS~d------g~~lASaSEDh~IDIA~vetG-------d~~~eI~~-~~~t~tVA 279 (313)
T KOG1407|consen 215 LWDVDELICERCISRL-DWPVRTLSFSHD------GRMLASASEDHFIDIAEVETG-------DRVWEIPC-EGPTFTVA 279 (313)
T ss_pred ccChhHhhhheeeccc-cCceEEEEeccC------cceeeccCccceEEeEecccC-------CeEEEeec-cCCceeEE
Confidence 4433221 24677775 689999999843 223444566666666666655 23556653 25677888
Q ss_pred EE
Q 001978 173 ME 174 (987)
Q Consensus 173 ~~ 174 (987)
|.
T Consensus 280 WH 281 (313)
T KOG1407|consen 280 WH 281 (313)
T ss_pred ec
Confidence 86
No 165
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=83.47 E-value=67 Score=34.26 Aligned_cols=162 Identities=19% Similarity=0.231 Sum_probs=90.0
Q ss_pred eEEEEe--CCEEEEEecCCeEEEEeCCCCCceee-EcCCCCCCccceeEEEeCCCCCeEEEEeecC----CC--ccEEEE
Q 001978 25 TCMSAG--NDVIVLGTSKGWLIRHDFGAGDSYDI-DLSAGRPGEQSIHKVFVDPGGSHCIATIVGS----GG--AETFYT 95 (987)
Q Consensus 25 ~~~~v~--nn~l~~~~~~g~l~ridl~~~~~~~~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~----~~--g~~~Y~ 95 (987)
..+++. ++.++++...|.. ++|+...++..+ ..+.........+.+.+||.|. +.++.... .. |..|++
T Consensus 43 ~G~~~~~~~g~l~v~~~~~~~-~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~ 120 (246)
T PF08450_consen 43 NGMAFDRPDGRLYVADSGGIA-VVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRI 120 (246)
T ss_dssp EEEEEECTTSEEEEEETTCEE-EEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEE
T ss_pred ceEEEEccCCEEEEEEcCceE-EEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEE
Confidence 455555 7888888876554 448833334332 3322221346889999999998 55544311 01 668888
Q ss_pred ecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEE-EcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 96 HAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIIL-GTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 96 ~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLi-Gt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
... .+++.+.. .-..-..++|+++. +.+.+ -|..+.|+.+.++.....-...+.++.++...+...|+.+.
T Consensus 121 ~~~-~~~~~~~~-~~~~pNGi~~s~dg------~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 121 DPD-GKVTVVAD-GLGFPNGIAFSPDG------KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp ETT-SEEEEEEE-EESSEEEEEEETTS------SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred CCC-CeEEEEec-CcccccceEECCcc------hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 877 44444331 11245689999432 23444 46779999999975422112223445666533348999987
Q ss_pred eeccCCCceEEEEEECCCeEEEEecCC
Q 001978 175 TASLSNGTRYYVMAVTPTRLYSFTGFG 201 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~g~~ 201 (987)
. +.+..+-.....+++.|...+
T Consensus 193 ~-----~G~l~va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 193 S-----DGNLWVADWGGGRIVVFDPDG 214 (246)
T ss_dssp T-----TS-EEEEEETTTEEEEEETTS
T ss_pred C-----CCCEEEEEcCCCEEEEECCCc
Confidence 3 112222222578898886543
No 166
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.24 E-value=4.3 Score=42.96 Aligned_cols=73 Identities=8% Similarity=0.135 Sum_probs=51.7
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeC-CCCC-ceeeEc-CCCC-------CCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 23 VITCMSAGNDVIVLGTSKGWLIRHDF-GAGD-SYDIDL-SAGR-------PGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~-~~~~~l-~~~~-------~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
.++.+...++.|...|.+|.+|.||+ ...- ...+.+ |.-. .....|..+.++.+|.-++.-+ +|+.
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls----ng~~ 89 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS----NGDS 89 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe----CCCE
Confidence 57889999999999999999999999 3222 222121 1111 2357899999999998655544 5888
Q ss_pred EEEecCC
Q 001978 93 FYTHAKW 99 (987)
Q Consensus 93 ~Y~~~~~ 99 (987)
|.++.+.
T Consensus 90 y~y~~~L 96 (219)
T PF07569_consen 90 YSYSPDL 96 (219)
T ss_pred EEecccc
Confidence 8777643
No 167
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=83.16 E-value=44 Score=35.64 Aligned_cols=79 Identities=20% Similarity=0.144 Sum_probs=45.5
Q ss_pred eCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC-
Q 001978 30 GNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL- 108 (987)
Q Consensus 30 ~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl- 108 (987)
.+.+.|.-..+|.|+|+|+.......+.+|. ...+-+++.+..+++|.. .+...+ .....+...+...
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~~g~l~v~~~---~~~~~~-d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-------PNGMAFDRPDGRLYVADS---GGIAVV-DPDTGKVTVLADLP 79 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS-------EEEEEEECTTSEEEEEET---TCEEEE-ETTTTEEEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC-------CceEEEEccCCEEEEEEc---CceEEE-ecCCCcEEEEeecc
Confidence 4556677778999999999545555566652 466666633345677665 344434 5554444444332
Q ss_pred ----CCceEEEEeec
Q 001978 109 ----KGLVVNAVAWN 119 (987)
Q Consensus 109 ----kg~~i~sVaw~ 119 (987)
+......++++
T Consensus 80 ~~~~~~~~~ND~~vd 94 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVD 94 (246)
T ss_dssp TTCSCTEEEEEEEE-
T ss_pred CCCcccCCCceEEEc
Confidence 23445555555
No 168
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=82.89 E-value=0.71 Score=41.69 Aligned_cols=37 Identities=16% Similarity=0.440 Sum_probs=30.7
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCC
Q 001978 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTN 888 (987)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~ 888 (987)
+|.+||+++.. . +.+-|.-+=..|.+|+.....+-..
T Consensus 4 kC~iCg~~I~~-----g------------qlFTF~~kG~VH~~C~~~~~~~k~~ 40 (101)
T PF09943_consen 4 KCYICGKPIYE-----G------------QLFTFTKKGPVHYECFREKASKKLY 40 (101)
T ss_pred EEEecCCeeee-----c------------ceEEEecCCcEeHHHHHHHHhhhcc
Confidence 79999999987 4 7778888889999999998755443
No 169
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.53 E-value=4.7 Score=42.31 Aligned_cols=79 Identities=15% Similarity=0.093 Sum_probs=62.8
Q ss_pred hhHHHHHHhcCCchhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc-------CCCChHHHHHHhcCcChHHHHHHHHHHHh
Q 001978 375 KEYAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN-------YILSFEEITLKFISVSEQDALRTFLLRKL 447 (987)
Q Consensus 375 ~~fe~Al~~~~~~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~-------~~~~~E~v~lkFl~~~~~~~L~~YL~~kl 447 (987)
..|+.|+++.. ..-.|+-.||.+|-.+|+|++|+++|.+.. -..+||...+=+++.++.+.=..|+..-|
T Consensus 90 e~YrkAlsl~p---~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL 166 (250)
T COG3063 90 ESYRKALSLAP---NNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL 166 (250)
T ss_pred HHHHHHHhcCC---CccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH
Confidence 35666666543 345789999999999999999999998875 14689998888999999999999999888
Q ss_pred hccCCchHH
Q 001978 448 DNLAKDDKC 456 (987)
Q Consensus 448 ~~l~~~~~~ 456 (987)
...+..+..
T Consensus 167 ~~dp~~~~~ 175 (250)
T COG3063 167 ELDPQFPPA 175 (250)
T ss_pred HhCcCCChH
Confidence 776665544
No 170
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=82.52 E-value=19 Score=41.06 Aligned_cols=114 Identities=14% Similarity=0.150 Sum_probs=79.7
Q ss_pred CCceeEEEEeCC---EEEEEecCCeEEEEeC-CCCCc-eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 001978 21 RGVITCMSAGND---VIVLGTSKGWLIRHDF-GAGDS-YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 21 ~~~i~~~~v~nn---~l~~~~~~g~l~ridl-~~~~~-~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (987)
.+.|.+++-++. +|.-|...|++-..|. .|++. .+..+ ++.|.++-.||...|.++|++ .+|.+||+
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~------~g~VEkv~w~~~se~~f~~~t--ddG~v~~~ 357 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF------DGEVEKVAWDPHSENSFFVST--DDGTVYYF 357 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe------ccceEEEEecCCCceeEEEec--CCceEEee
Confidence 367899999887 7788888999999999 66663 33443 478999999999888776654 28999999
Q ss_pred ecCCC-CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 96 HAKWS-KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 96 ~~~~~-k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
..+.. ++---.|-.+-.|.++..|... -+-...|..++.+..-.+..
T Consensus 358 D~R~~~~~vwt~~AHd~~ISgl~~n~~~-----p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 358 DIRNPGKPVWTLKAHDDEISGLSVNIQT-----PGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred ecCCCCCceeEEEeccCCcceEEecCCC-----CcceeeccccceEEEEeecC
Confidence 87665 4332223456699999999432 12344455667666555543
No 171
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.49 E-value=66 Score=34.51 Aligned_cols=110 Identities=12% Similarity=0.024 Sum_probs=67.2
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce
Q 001978 25 TCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR 103 (987)
Q Consensus 25 ~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k 103 (987)
.+..|-+|++++|..+|.||-++. .+++...+.+.- ..=.+--+|++|.-+-+.+. ||.-|-+..++.+..
T Consensus 57 ~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-----~vk~~a~~d~~~glIycgsh---d~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 57 CSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-----TVKVRAQCDFDGGLIYCGSH---DGNFYALDPKTYGCV 128 (354)
T ss_pred eeeEEECCEEEEEEccCcEEEEEecchhheeeeeehh-----hhccceEEcCCCceEEEecC---CCcEEEecccccceE
Confidence 344567889999999999999999 777887776641 11234557999886666665 565554554443221
Q ss_pred eccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 104 VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 104 ~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
--+|--|-...+=+.++ -.+++-..+..|.++-+..++.
T Consensus 129 ykskcgG~~f~sP~i~~------g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 129 YKSKCGGGTFVSPVIAP------GDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EecccCCceeccceecC------CCceEEEEeccceEEEEccCCC
Confidence 11333343344434442 1235667777777777666543
No 172
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=82.45 E-value=27 Score=40.09 Aligned_cols=138 Identities=12% Similarity=0.071 Sum_probs=74.9
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce
Q 001978 25 TCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR 103 (987)
Q Consensus 25 ~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k 103 (987)
.+..+.++.++++..+|.++.+|. .++.+-+.+.+... .. - ..|.++++++. +|..+.+....-+..
T Consensus 235 ~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~---~p----~--~~~~~vyv~~~---~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQ---GP----A--VDDNRLYVTDA---DGVVVALDRRSGSEL 302 (377)
T ss_pred CccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCcc---Cc----e--EeCCEEEEECC---CCeEEEEECCCCcEE
Confidence 345678899999999999999999 65544444332110 11 1 13667777776 788877765432211
Q ss_pred -eccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeee--eeCCCCCceeeEEEEeeccCC
Q 001978 104 -VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF--ELNELPEAFMGLQMETASLSN 180 (987)
Q Consensus 104 -~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~--~l~~~~~~I~gi~~~~~~~~~ 180 (987)
...++.+....+.+. ..+.+.+|+.+|.||......+ +.+. .+++ +++.+--. .. +
T Consensus 303 W~~~~~~~~~~ssp~i--------~g~~l~~~~~~G~l~~~d~~tG-------~~~~~~~~~~--~~~~~sp~---~~-~ 361 (377)
T TIGR03300 303 WKNDELKYRQLTAPAV--------VGGYLVVGDFEGYLHWLSREDG-------SFVARLKTDG--SGIASPPV---VV-G 361 (377)
T ss_pred EccccccCCccccCEE--------ECCEEEEEeCCCEEEEEECCCC-------CEEEEEEcCC--CccccCCE---EE-C
Confidence 011111211111111 1247889999999888765433 2222 3332 11211111 01 2
Q ss_pred CceEEEEEECCCeEEEE
Q 001978 181 GTRYYVMAVTPTRLYSF 197 (987)
Q Consensus 181 ~~~~~i~ast~~rly~f 197 (987)
+.+++++....||.|
T Consensus 362 --~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 --DGLLVQTRDGDLYAF 376 (377)
T ss_pred --CEEEEEeCCceEEEe
Confidence 347777888899976
No 173
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=82.45 E-value=1.1e+02 Score=35.79 Aligned_cols=111 Identities=13% Similarity=0.082 Sum_probs=52.8
Q ss_pred HHHHHHhcccHHHHHHHHhC----CCCchh----hHHhhHHHHHhHChHH---HHHHHHcCCCCCCC-cchhhhhh--cC
Q 001978 540 VVHHYIQQGEAKKALQMLRK----PAVPID----LQYKFAPDLIMLDAYE---TVESWMTTNNLNPR-KLIPAMMR--YS 605 (987)
Q Consensus 540 ll~~yi~~~~~~~AL~~l~~----~~~~~~----li~k~~~~Ll~~~p~~---ti~~l~~~~~ld~~-~lip~L~~--~~ 605 (987)
++..++..|++++|++.+.+ .++... ++..+. .+-..++.+ .++.|.+...-||. .+.-++-. +.
T Consensus 269 ~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~-~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~ 347 (409)
T TIGR00540 269 LAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIP-RLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK 347 (409)
T ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhh-hcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 55688899999999998864 344222 221111 111123332 33334443333442 11111110 11
Q ss_pred CCCCCCCChHHHHHHHHH--HHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHH
Q 001978 606 SEPHAKNETHEVIKYLEF--CVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQC 658 (987)
Q Consensus 606 ~~~~~~~~~~~~~~YLe~--li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~ 658 (987)
. .....+..||+. .+... .++..+..+..+|.+.++.++-.++.+.
T Consensus 348 ~-----~~~~~A~~~le~a~a~~~~--p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 348 H-----GEFIEAADAFKNVAACKEQ--LDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred c-----ccHHHHHHHHHHhHHhhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 134557788884 33322 3445566777777776554554444443
No 174
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=82.31 E-value=6.1 Score=45.24 Aligned_cols=149 Identities=9% Similarity=0.147 Sum_probs=94.7
Q ss_pred eeEEEEeCC---EEEEEecCCeEEEEeC-C-CCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 24 ITCMSAGND---VIVLGTSKGWLIRHDF-G-AGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 24 i~~~~v~nn---~l~~~~~~g~l~ridl-~-~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
|+++.--.. .+.=|.-.|.|+.|++ + ..-+..+.-+ ...|..+-..+.|.-.+.++= ++..-++...
T Consensus 217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH-----~k~Vrd~~~s~~g~~fLS~sf---D~~lKlwDtE 288 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH-----RKPVRDASFNNCGTSFLSASF---DRFLKLWDTE 288 (503)
T ss_pred cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcc-----hhhhhhhhccccCCeeeeeec---ceeeeeeccc
Confidence 555544443 3333445678999999 4 4446666666 346778888888988887654 5555556554
Q ss_pred CCCceeccCC-CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 99 WSKPRVLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 99 ~~k~k~L~kl-kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
.-+ .+.++ -|+.+.||-++++. ...||+|+.+|.|....+-.++-...|-+. | ++|..|.|..
T Consensus 289 TG~--~~~~f~~~~~~~cvkf~pd~-----~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h---L----g~i~~i~F~~-- 352 (503)
T KOG0282|consen 289 TGQ--VLSRFHLDKVPTCVKFHPDN-----QNIFLVGGSDKKIRQWDIRSGKVVQEYDRH---L----GAILDITFVD-- 352 (503)
T ss_pred cce--EEEEEecCCCceeeecCCCC-----CcEEEEecCCCcEEEEeccchHHHHHHHhh---h----hheeeeEEcc--
Confidence 433 33333 36899999999654 247999999999999888665311111111 2 5688888863
Q ss_pred cCCCceEEEEEECCCeEEEEec
Q 001978 178 LSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~g 199 (987)
+.+.+|-.|..+.+.-|..
T Consensus 353 ---~g~rFissSDdks~riWe~ 371 (503)
T KOG0282|consen 353 ---EGRRFISSSDDKSVRIWEN 371 (503)
T ss_pred ---CCceEeeeccCccEEEEEc
Confidence 2367777676655555654
No 175
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=82.13 E-value=0.21 Score=42.60 Aligned_cols=37 Identities=35% Similarity=0.771 Sum_probs=14.6
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEE---cCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVF---PCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvF---pCgH~fH~~CL~~~~ 883 (987)
+..|.+|...+...+ +. +-++= .|++.||..||.+..
T Consensus 2 ~~~C~IC~~~~~~~~---~~-----------p~~~C~n~~C~~~fH~~CL~~wf 41 (70)
T PF11793_consen 2 ELECGICYSYRLDDG---EI-----------PDVVCPNPSCGKKFHLLCLSEWF 41 (70)
T ss_dssp --S-SSS--SS-TT-------------------B--S-TT----B-SGGGHHHH
T ss_pred CCCCCcCCcEecCCC---Cc-----------CceEcCCcccCCHHHHHHHHHHH
Confidence 457999998766311 10 33333 599999999999876
No 176
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=81.97 E-value=56 Score=37.87 Aligned_cols=142 Identities=12% Similarity=0.153 Sum_probs=76.0
Q ss_pred CEEEEEecC---CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC
Q 001978 32 DVIVLGTSK---GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL 108 (987)
Q Consensus 32 n~l~~~~~~---g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl 108 (987)
+.|+++... ..|+++|+.......+.-. ...+..+...|.|.++++++...++.+.|+++....+.+.|...
T Consensus 202 ~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 276 (417)
T TIGR02800 202 QKLAYVSFESGKPEIYVQDLATGQREKVASF-----PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG 276 (417)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEeecC-----CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCC
Confidence 345554432 4799999932222222211 12334456789999988876532344677777766666777653
Q ss_pred CCceEEEEeecCCCCCCCCcceEEEEcCC-C--cEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEE
Q 001978 109 KGLVVNAVAWNRQQITEASTKEIILGTDT-G--QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYY 185 (987)
Q Consensus 109 kg~~i~sVaw~~~~~~~~st~~iLiGt~~-G--~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~ 185 (987)
.+ ...+.+|.++ .+.|++.+.+ | .||...+..++ .+.+. ..+ ..+....|. .+.+++
T Consensus 277 ~~-~~~~~~~s~d------g~~l~~~s~~~g~~~iy~~d~~~~~-----~~~l~-~~~--~~~~~~~~s-----pdg~~i 336 (417)
T TIGR02800 277 PG-IDTEPSWSPD------GKSIAFTSDRGGSPQIYMMDADGGE-----VRRLT-FRG--GYNASPSWS-----PDGDLI 336 (417)
T ss_pred CC-CCCCEEECCC------CCEEEEEECCCCCceEEEEECCCCC-----EEEee-cCC--CCccCeEEC-----CCCCEE
Confidence 32 3457788832 2357666544 3 58877665431 22321 121 234555553 223566
Q ss_pred EEEECCC---eEEEEe
Q 001978 186 VMAVTPT---RLYSFT 198 (987)
Q Consensus 186 i~ast~~---rly~f~ 198 (987)
++.+... ++|.+.
T Consensus 337 ~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 337 AFVHREGGGFNIAVMD 352 (417)
T ss_pred EEEEccCCceEEEEEe
Confidence 6655443 666553
No 177
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=81.72 E-value=54 Score=35.16 Aligned_cols=136 Identities=13% Similarity=0.174 Sum_probs=78.2
Q ss_pred EeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccC
Q 001978 29 AGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSK 107 (987)
Q Consensus 29 v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~k 107 (987)
-+++.++.+....+|.+||. ...-+.++... .+-|...| .|.|.|+++... +-..-++.....|+..--+
T Consensus 75 ~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~-----~eni~i~w-sp~g~~~~~~~k---dD~it~id~r~~~~~~~~~ 145 (313)
T KOG1407|consen 75 KHPDLFATASGDKTIRIWDIRSGKCTARIETK-----GENINITW-SPDGEYIAVGNK---DDRITFIDARTYKIVNEEQ 145 (313)
T ss_pred CCCcceEEecCCceEEEEEeccCcEEEEeecc-----CcceEEEE-cCCCCEEEEecC---cccEEEEEecccceeehhc
Confidence 35677778888888999999 44445555443 24455555 588999998877 5555566655554433333
Q ss_pred CCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEE
Q 001978 108 LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVM 187 (987)
Q Consensus 108 lkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ 187 (987)
..+.+.-++|+.++ .-|.+-+-.|.|-.... ..+|.|+.+.- +|.-.|.+..-| ..|++.+
T Consensus 146 -~~~e~ne~~w~~~n------d~Fflt~GlG~v~ILsy-------psLkpv~si~A--H~snCicI~f~p---~GryfA~ 206 (313)
T KOG1407|consen 146 -FKFEVNEISWNNSN------DLFFLTNGLGCVEILSY-------PSLKPVQSIKA--HPSNCICIEFDP---DGRYFAT 206 (313)
T ss_pred -ccceeeeeeecCCC------CEEEEecCCceEEEEec-------ccccccccccc--CCcceEEEEECC---CCceEee
Confidence 24678888998332 13444344475543322 23666666653 555555554322 2255555
Q ss_pred EECCC
Q 001978 188 AVTPT 192 (987)
Q Consensus 188 ast~~ 192 (987)
.+...
T Consensus 207 GsADA 211 (313)
T KOG1407|consen 207 GSADA 211 (313)
T ss_pred ccccc
Confidence 44433
No 178
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=81.40 E-value=48 Score=35.75 Aligned_cols=107 Identities=10% Similarity=0.102 Sum_probs=63.4
Q ss_pred eeEEEEe--CCEEEEEe-cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc-EEEEecC
Q 001978 24 ITCMSAG--NDVIVLGT-SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE-TFYTHAK 98 (987)
Q Consensus 24 i~~~~v~--nn~l~~~~-~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~-~~Y~~~~ 98 (987)
..+++++ ++.++++. .+|.|..+|+ ....+..++.+ ..+..+-++|.|..++++.. ++. .+++...
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~------~~~~~~~~~~dg~~l~~~~~---~~~~~~~~d~~ 145 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG------VEPEGMAVSPDGKIVVNTSE---TTNMAHFIDTK 145 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC------CCcceEEECCCCCEEEEEec---CCCeEEEEeCC
Confidence 3556665 34666654 4689999999 43334444322 23577889999998888776 443 3444543
Q ss_pred CCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEc-CCCcEEEEEecc
Q 001978 99 WSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDE 147 (987)
Q Consensus 99 ~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~ 147 (987)
..+. ..+. .+....+++|+++ .+.+++++ .+|.|+...+..
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~s~d------g~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 146 TYEIVDNVL--VDQRPRFAEFTAD------GKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred CCeEEEEEE--cCCCccEEEECCC------CCEEEEEcCCCCEEEEEEcCc
Confidence 3322 1121 2345678899832 12455565 478888877654
No 179
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=81.06 E-value=1.6e+02 Score=36.84 Aligned_cols=320 Identities=11% Similarity=0.046 Sum_probs=157.2
Q ss_pred HHchhhHHHHHHhcCC-----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhcCC--C---ChHHHHHHhcCcChHHHHH
Q 001978 371 YLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYI--L---SFEEITLKFISVSEQDALR 440 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~-----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~--~---~~E~v~lkFl~~~~~~~L~ 440 (987)
++..|++++|++..+. |. ....+...|.-+...|++++|...|.+.... . .+......+...++.+.-.
T Consensus 86 ~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~ 164 (656)
T PRK15174 86 PLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAI 164 (656)
T ss_pred HhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHH
Confidence 3457899999988763 22 2345677788899999999999999887511 1 1122222233444444333
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHH---HHHHH
Q 001978 441 TFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEA---TTMKL 517 (987)
Q Consensus 441 ~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~---tv~~l 517 (987)
.++......-+ ++.. .. .++.. +. ..+ ++.+..+.++.++...... +.. .....
T Consensus 165 ~~~~~~~~~~P-~~~~---a~-~~~~~-l~-~~g---------------~~~eA~~~~~~~l~~~~~~-~~~~~~~l~~~ 221 (656)
T PRK15174 165 SLARTQAQEVP-PRGD---MI-ATCLS-FL-NKS---------------RLPEDHDLARALLPFFALE-RQESAGLAVDT 221 (656)
T ss_pred HHHHHHHHhCC-CCHH---HH-HHHHH-HH-HcC---------------CHHHHHHHHHHHHhcCCCc-chhHHHHHHHH
Confidence 33332222111 1111 11 12111 11 011 1122233344444432100 111 12245
Q ss_pred HHHcCChhHHHHHHHhH--------hhHHHHHHHHHhcccHHH----HHHHHhCC----CCchhhHHhhHHHHHh-HChH
Q 001978 518 LESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKK----ALQMLRKP----AVPIDLQYKFAPDLIM-LDAY 580 (987)
Q Consensus 518 l~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~----AL~~l~~~----~~~~~li~k~~~~Ll~-~~p~ 580 (987)
+...|+.++++...... .-+..+...|...|++++ |+..+.+. ++.......++..++. ...+
T Consensus 222 l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 56678888887666542 123345677888899886 67766532 3334566677777765 4667
Q ss_pred HHHHHHHcCCCCCCCcc--hhhhhh-cCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHH
Q 001978 581 ETVESWMTTNNLNPRKL--IPAMMR-YSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQ 657 (987)
Q Consensus 581 ~ti~~l~~~~~ld~~~l--ip~L~~-~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~ 657 (987)
+++..+-+.-.++|..- ...+-. +.. ......++..++.++...+. ....+..+..+|...++.++-+..++
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~----~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQ----VGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77776654334455431 111100 000 11345677777777765443 23344444444555444445555554
Q ss_pred HhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh--cCHHHHHHHhhcc-CCC--HHHHHHH
Q 001978 658 CKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ--VDPELAMAEADKV-EDD--EDLRKKL 732 (987)
Q Consensus 658 ~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~--~di~lA~~~~~~~-~~d--~~~~kkL 732 (987)
..-. ..| ..++..+ . .-++.|.+|++.+=. ...+...+.|-+. ..| .-.||-=
T Consensus 377 ~al~----~~P-~~~~~~~-----------~------ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 434 (656)
T PRK15174 377 HYIQ----ARA-SHLPQSF-----------E------EGLLALDGQISAVNLPPERLDWAWEVAGRQSGIERDEWERRAK 434 (656)
T ss_pred HHHH----hCh-hhchhhH-----------H------HHHHHHHHHHHhcCCccchhhHHHHHhcccccCChHHHHHHHH
Confidence 4300 000 1111111 0 122334444443322 1236778888543 223 3357777
Q ss_pred HHHHHHHHh
Q 001978 733 WLMVAKHVI 741 (987)
Q Consensus 733 Wl~ll~~~i 741 (987)
|-.++.+++
T Consensus 435 ~~~~~~~~~ 443 (656)
T PRK15174 435 WGYLADNFL 443 (656)
T ss_pred hhHHHHHHH
Confidence 988888876
No 180
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.82 E-value=0.65 Score=52.73 Aligned_cols=50 Identities=30% Similarity=0.628 Sum_probs=33.4
Q ss_pred cccccccccccchhhhhcccccccccc-cC--CCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 829 VIDRDEDCGVCRRKILVAGRDYRMARG-YA--SVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 829 ~i~~~~~C~~C~k~L~~~~~~~~~~~~-~~--~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
.+.....|.+|=.++.. +.... +. ...+.....+-||.|.||..||.+.+
T Consensus 567 ~~~~t~dC~ICMt~I~l-----~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WM 619 (636)
T KOG0828|consen 567 FVRRTNDCVICMTPIDL-----RSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWM 619 (636)
T ss_pred hhhccccceEeccccce-----eeccCcchhhhhhhhccccccchHHHHHHHHHHHHH
Confidence 34556789999998877 42211 11 11223356667999999999999876
No 181
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.73 E-value=3.9 Score=51.36 Aligned_cols=165 Identities=13% Similarity=0.200 Sum_probs=96.5
Q ss_pred hhcCCCceeEEEE---eCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 17 AAKGRGVITCMSA---GNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 17 ~~~~~~~i~~~~v---~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
..+-.+.|..+.+ ++|+|+=|-.+|.|+.||| +++.....- +....+.|..+-=.-.-.|++.+..+ +|..
T Consensus 112 ~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~lsWNrkvqhILAS~s~--sg~~ 186 (1049)
T KOG0307|consen 112 KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKCLSWNRKVSHILASGSP--SGRA 186 (1049)
T ss_pred hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceEeccchhhhHHhhccCC--CCCc
Confidence 3445566777765 4679999999999999999 766643321 11123567777777888999988763 5666
Q ss_pred EEEecCCCC-ceeccCCCC-ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEE-EeccCccccceeeeeeeeCCCCCcee
Q 001978 93 FYTHAKWSK-PRVLSKLKG-LVVNAVAWNRQQITEASTKEIILGTDTGQLHEM-AVDEKDKREKYIKLLFELNELPEAFM 169 (987)
Q Consensus 93 ~Y~~~~~~k-~k~L~klkg-~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~-~i~~~~~~e~~~k~v~~l~~~~~~I~ 169 (987)
-.+..+.++ +-.++..-| +.+.+|+|+++.. | .+++.+.+-..=-. .++-+. ...-+| +|+... ..|.
T Consensus 187 ~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a----T-ql~~As~dd~~PviqlWDlR~-assP~k-~~~~H~--~Gil 257 (1049)
T KOG0307|consen 187 VIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA----T-QLLVASGDDSAPVIQLWDLRF-ASSPLK-ILEGHQ--RGIL 257 (1049)
T ss_pred eeccccCCCcccccccCCCccceeeeeeCCCCc----e-eeeeecCCCCCceeEeecccc-cCCchh-hhcccc--ccee
Confidence 677665443 223333333 6789999996542 2 68888765222222 222210 000112 234444 3489
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 170 GLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
++.|.. .+.++++--.-+.|++.|..
T Consensus 258 slsWc~----~D~~lllSsgkD~~ii~wN~ 283 (1049)
T KOG0307|consen 258 SLSWCP----QDPRLLLSSGKDNRIICWNP 283 (1049)
T ss_pred eeccCC----CCchhhhcccCCCCeeEecC
Confidence 999963 22233332222778888865
No 182
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=80.66 E-value=0.85 Score=34.57 Aligned_cols=19 Identities=37% Similarity=0.803 Sum_probs=15.3
Q ss_pred EEEcCCChhHHHhHHHHHh
Q 001978 866 YVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 866 vvFpCgH~fH~~CL~~~~~ 884 (987)
+..+|||+|=..|+.+...
T Consensus 12 v~l~CGH~FC~~Cl~~~~~ 30 (42)
T PF15227_consen 12 VSLPCGHSFCRSCLERLWK 30 (42)
T ss_dssp EE-SSSSEEEHHHHHHHHC
T ss_pred cccCCcCHHHHHHHHHHHH
Confidence 4469999999999988763
No 183
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=80.41 E-value=78 Score=32.98 Aligned_cols=116 Identities=12% Similarity=0.139 Sum_probs=73.0
Q ss_pred CceeEEEEeCCEEEE-EecCCeEEEEeC-CCCCceeeEcCCC--CCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 22 GVITCMSAGNDVIVL-GTSKGWLIRHDF-GAGDSYDIDLSAG--RPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~-~~~~g~l~ridl-~~~~~~~~~l~~~--~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
+.|.++--=|+.|+. |....+|--||| -|.-|..++-... ....+.|..+-+||+|+.+..-- +++....|--+
T Consensus 184 ghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~--~dssc~lydir 261 (350)
T KOG0641|consen 184 GHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH--ADSSCMLYDIR 261 (350)
T ss_pred ccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc--CCCceEEEEee
Confidence 467777777777754 556666777799 6666655443222 22247899999999998544322 22344455444
Q ss_pred CCCCceeccCC--CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 98 KWSKPRVLSKL--KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 98 ~~~k~k~L~kl--kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
.. |.+.++ ...+|+||-|.|.. --+|.|+-+-.|-.+.+.+.
T Consensus 262 g~---r~iq~f~phsadir~vrfsp~a------~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 262 GG---RMIQRFHPHSADIRCVRFSPGA------HYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CC---ceeeeeCCCccceeEEEeCCCc------eEEEEecccceEEEeecccc
Confidence 33 233332 33589999999543 25777877887877777653
No 184
>PRK04922 tolB translocation protein TolB; Provisional
Probab=80.21 E-value=67 Score=37.74 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=65.0
Q ss_pred CceeEEEEe--CCEEEEEe-c--CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 22 GVITCMSAG--NDVIVLGT-S--KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 22 ~~i~~~~v~--nn~l~~~~-~--~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
+.+.+.+.+ ++.++++. . ...|+++|+.......+.-. .+.....-.+|.|.+++++....++.+.|.++
T Consensus 204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-----~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF-----RGINGAPSFSPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-----CCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence 345555554 34555443 2 34699999933332222111 12233556789999988776533344677777
Q ss_pred cCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcC-CC--cEEEEEecc
Q 001978 97 AKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD-TG--QLHEMAVDE 147 (987)
Q Consensus 97 ~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~-~G--~i~e~~i~~ 147 (987)
....+.+.+....+ ...+++|.++ .+.++.++. .| .||...+..
T Consensus 279 ~~~g~~~~lt~~~~-~~~~~~~spD------G~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 279 LGSRQLTRLTNHFG-IDTEPTWAPD------GKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred CCCCCeEECccCCC-CccceEECCC------CCEEEEEECCCCCceEEEEECCC
Confidence 76667777765333 4567899843 225666654 34 477776654
No 185
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=79.96 E-value=2.1 Score=36.11 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=40.7
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
+|+.+++|++|+++++.- ..-......+|.-++..|+|.+|++.|.+..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 589999999999998642 2344667789999999999999999988875
No 186
>PRK05137 tolB translocation protein TolB; Provisional
Probab=79.76 E-value=67 Score=37.74 Aligned_cols=154 Identities=10% Similarity=0.104 Sum_probs=86.3
Q ss_pred CCCceeEEEEeCC--EEEEEe-c--CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE
Q 001978 20 GRGVITCMSAGND--VIVLGT-S--KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY 94 (987)
Q Consensus 20 ~~~~i~~~~v~nn--~l~~~~-~--~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y 94 (987)
+.+.+.+.+.+.+ .|+++. . .+.|+++|+...+...+.-. .+.+......|.|.+++++++..++.+.|.
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-----~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 274 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-----PGMTFAPRFSPDGRKVVMSLSQGGNTDIYT 274 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-----CCcccCcEECCCCCEEEEEEecCCCceEEE
Confidence 4445777777644 454443 2 36899999933333222111 134455667899999987765333456777
Q ss_pred EecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCC-C--cEEEEEeccCccccceeeeeeeeCCCCCceeeE
Q 001978 95 THAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT-G--QLHEMAVDEKDKREKYIKLLFELNELPEAFMGL 171 (987)
Q Consensus 95 ~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~-G--~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi 171 (987)
++....+.+.|....+ ...+.+|.++ .+.|+..+.. | .||...++.+ ..+.+..- ++.+...
T Consensus 275 ~d~~~~~~~~Lt~~~~-~~~~~~~spD------G~~i~f~s~~~g~~~Iy~~d~~g~-----~~~~lt~~---~~~~~~~ 339 (435)
T PRK05137 275 MDLRSGTTTRLTDSPA-IDTSPSYSPD------GSQIVFESDRSGSPQLYVMNADGS-----NPRRISFG---GGRYSTP 339 (435)
T ss_pred EECCCCceEEccCCCC-ccCceeEcCC------CCEEEEEECCCCCCeEEEEECCCC-----CeEEeecC---CCcccCe
Confidence 7777777788876433 4667899843 2356666543 3 5777665543 13444221 1335555
Q ss_pred EEEeeccCCCceEEEEEECC---CeEEEEe
Q 001978 172 QMETASLSNGTRYYVMAVTP---TRLYSFT 198 (987)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~---~rly~f~ 198 (987)
.|. .+.+.+++++.. .+++.+.
T Consensus 340 ~~S-----pdG~~ia~~~~~~~~~~i~~~d 364 (435)
T PRK05137 340 VWS-----PRGDLIAFTKQGGGQFSIGVMK 364 (435)
T ss_pred EEC-----CCCCEEEEEEcCCCceEEEEEE
Confidence 564 223566665532 3455443
No 187
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.14 E-value=16 Score=46.32 Aligned_cols=201 Identities=12% Similarity=0.118 Sum_probs=110.8
Q ss_pred EEEEEecCCeEEEEeCCCC-CceeeEcC-CCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC-ceeccCC-
Q 001978 33 VIVLGTSKGWLIRHDFGAG-DSYDIDLS-AGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK-PRVLSKL- 108 (987)
Q Consensus 33 ~l~~~~~~g~l~ridl~~~-~~~~~~l~-~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k-~k~L~kl- 108 (987)
+++-|+.+|.|..+|..+. .-.++.+- ..+.-.+.|..+-+.|.+..++.+.. ++|+.|.++.+..+ +-.....
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa--~~geI~iWDlnn~~tP~~~~~~~ 159 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGA--DDGEILIWDLNKPETPFTPGSQA 159 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccC--CCCcEEEeccCCcCCCCCCCCCC
Confidence 5888999999999998332 11122211 11111478999999998886666533 38999999865432 1112111
Q ss_pred CCceEEEEeecCCCCCCCCcceEEEE-cCCCcEEEEEeccCccccceeeeeeeeCCCC--CceeeEEEEeeccCCCceEE
Q 001978 109 KGLVVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYIKLLFELNELP--EAFMGLQMETASLSNGTRYY 185 (987)
Q Consensus 109 kg~~i~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~--~~I~gi~~~~~~~~~~~~~~ 185 (987)
.--.|++++||+.. ..||.- +.+|....-.+.. -+++.++.+.+ .-+.+|.|.. +....+
T Consensus 160 ~~~eI~~lsWNrkv------qhILAS~s~sg~~~iWDlr~-------~~pii~ls~~~~~~~~S~l~WhP----~~aTql 222 (1049)
T KOG0307|consen 160 PPSEIKCLSWNRKV------SHILASGSPSGRAVIWDLRK-------KKPIIKLSDTPGRMHCSVLAWHP----DHATQL 222 (1049)
T ss_pred CcccceEeccchhh------hHHhhccCCCCCceeccccC-------CCcccccccCCCccceeeeeeCC----CCceee
Confidence 11389999999432 245553 4456544433322 15566776532 2267899974 344677
Q ss_pred EEEECCCe---EEEEecC--CchHHHHhhhhcccccccccCCCcCCCcceeeeccCCCceEEEeecCceEEEEeec
Q 001978 186 VMAVTPTR---LYSFTGF--GSLDTVFASYLDRAVHFMELPGEILNSELHFFIKQRRAVHFAWLSGAGIYHGGLNF 256 (987)
Q Consensus 186 i~ast~~r---ly~f~g~--~~l~~lf~~~~~~~~~~~elp~~~~~s~l~~~~~~~~~~~faW~t~~gi~~g~i~~ 256 (987)
++||.+.+ +--|+=+ .+-.++|..+.. .+.-+.+......+++.. +.....+.|-.++|=++|.+..
T Consensus 223 ~~As~dd~~PviqlWDlR~assP~k~~~~H~~---GilslsWc~~D~~lllSs-gkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 223 LVASGDDSAPVIQLWDLRFASSPLKILEGHQR---GILSLSWCPQDPRLLLSS-GKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred eeecCCCCCceeEeecccccCCchhhhccccc---ceeeeccCCCCchhhhcc-cCCCCeeEecCCCceEeeecCC
Confidence 77776433 2224421 112222222111 122233322222233332 2336789999999999998875
No 188
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.04 E-value=1.7e+02 Score=36.11 Aligned_cols=90 Identities=10% Similarity=0.032 Sum_probs=56.8
Q ss_pred eeEEEEeCC-EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC-CC
Q 001978 24 ITCMSAGND-VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW-SK 101 (987)
Q Consensus 24 i~~~~v~nn-~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~-~k 101 (987)
+..|.-+.+ .|.+...+|++++.++.|+..+...+-.... ...|.-.+.-.+| +.+-+. +|..+-++... .+
T Consensus 86 lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~-~~~I~ec~~f~~G--Vavlt~---~g~v~~i~~~~~~~ 159 (829)
T KOG2280|consen 86 LIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQ-MSDIVECRFFHNG--VAVLTV---SGQVILINGVEEPK 159 (829)
T ss_pred eeeecccCCceEEEEeccceEEEeecchhhhcccccccccc-cCceeEEEEecCc--eEEEec---CCcEEEEcCCCcch
Confidence 444544443 5667788999999999666655432211111 3568888887788 333344 58877766533 36
Q ss_pred ceeccCCCCceEEEEeec
Q 001978 102 PRVLSKLKGLVVNAVAWN 119 (987)
Q Consensus 102 ~k~L~klkg~~i~sVaw~ 119 (987)
.+.++...+.....-+|.
T Consensus 160 ~~~~~diP~~~~~~~~Wt 177 (829)
T KOG2280|consen 160 LRKMPDIPYNELPKSCWT 177 (829)
T ss_pred hhhCCCCCCccCCCccee
Confidence 666766667777778886
No 189
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=78.96 E-value=15 Score=44.28 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=49.1
Q ss_pred hhHHHHHHchhhHHHHHHhcC---CchhHhHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCChHHHHHHhcCcChHHHHHH
Q 001978 365 RDMWKVYLDMKEYAAALANCR---DPLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRT 441 (987)
Q Consensus 365 ~~~W~~ll~~~~fe~Al~~~~---~~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~~~E~v~lkFl~~~~~~~L~~ 441 (987)
.+.-.||=+.|+|+.|.+++. .|...-..+..+|+.+=.+|+|.+|-++|.... .+..-+.++-..+..+-...
T Consensus 795 ~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~---~p~~aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 795 KDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---EPDKAIQMYDKHGLDDDMIR 871 (1636)
T ss_pred HHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---CchHHHHHHHhhCcchHHHH
Confidence 344455777777777777754 355556678888999999999999999987765 33344445444443333333
Q ss_pred HH
Q 001978 442 FL 443 (987)
Q Consensus 442 YL 443 (987)
.+
T Consensus 872 lv 873 (1636)
T KOG3616|consen 872 LV 873 (1636)
T ss_pred HH
Confidence 33
No 190
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=78.91 E-value=8.9 Score=32.15 Aligned_cols=54 Identities=24% Similarity=0.320 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhhc-CCCChHHHHHHhcCc----ChHHHHHHHHH
Q 001978 391 DQVYLVQAEAAFATKDFHRAASFYAKIN-YILSFEEITLKFISV----SEQDALRTFLL 444 (987)
Q Consensus 391 ~~V~~~~~~~l~~~g~y~~Aa~~~~~~~-~~~~~E~v~lkFl~~----~~~~~L~~YL~ 444 (987)
+..+.++-+.||+.|+|.+||++.+.+- +..--.+.+.||-.. ++...|..|..
T Consensus 6 d~l~~~~F~~l~~~g~y~eAA~~AA~sP~giLRt~~Ti~rFk~~p~~pGq~splL~YF~ 64 (66)
T PF13838_consen 6 DDLYVQQFNELFSQGQYEEAAKVAANSPRGILRTPETINRFKQVPAQPGQPSPLLQYFG 64 (66)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHSGGGTT-SHHHHHHHHTS---TTS--HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCccchhcCHHHHHHHHcCCCCCCCCCHHHHHHh
Confidence 5567788899999999999999999874 334556788889753 46667777765
No 191
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=78.85 E-value=36 Score=41.44 Aligned_cols=106 Identities=10% Similarity=0.083 Sum_probs=76.0
Q ss_pred ceeEEEEeCCEEEEEec--CCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 23 VITCMSAGNDVIVLGTS--KGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~--~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
-+.|++++.|-=|++|. ..++-.||. .+..|.-|-=| .++|+-+-+.|.|.+|..... +|-.-||...+
T Consensus 537 DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-----~~~V~al~~Sp~Gr~LaSg~e---d~~I~iWDl~~ 608 (707)
T KOG0263|consen 537 DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-----KGPVTALAFSPCGRYLASGDE---DGLIKIWDLAN 608 (707)
T ss_pred ccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-----CCceEEEEEcCCCceEeeccc---CCcEEEEEcCC
Confidence 36899999998877774 467888899 66666656444 478999999999999988877 89999998766
Q ss_pred CCceeccCCCCc--eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEE
Q 001978 100 SKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMA 144 (987)
Q Consensus 100 ~k~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~ 144 (987)
.+ .+..++|+ .|.|+.|..+. +-++.|..+..|-.-.
T Consensus 609 ~~--~v~~l~~Ht~ti~SlsFS~dg------~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 609 GS--LVKQLKGHTGTIYSLSFSRDG------NVLASGGADNSVRLWD 647 (707)
T ss_pred Cc--chhhhhcccCceeEEEEecCC------CEEEecCCCCeEEEEE
Confidence 42 33344554 78899997432 2455566665554433
No 192
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=78.64 E-value=14 Score=41.03 Aligned_cols=156 Identities=11% Similarity=0.172 Sum_probs=99.5
Q ss_pred hcCCCceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 18 AKGRGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 18 ~~~~~~i~~~~v~---nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
.-|.|.|+|+-.+ .++|.-+-+.+.|+.+|+ ....+..+-+- .+-+.|.-.|.|....+... |-..|
T Consensus 184 swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~------mRTN~IswnPeafnF~~a~E---D~nlY 254 (433)
T KOG0268|consen 184 SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT------MRTNTICWNPEAFNFVAANE---DHNLY 254 (433)
T ss_pred ecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee------ccccceecCccccceeeccc---cccce
Confidence 4456777877654 457777778999999999 66666666553 56688999997765554444 33333
Q ss_pred EEecCCCCceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeE
Q 001978 94 YTHAKWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGL 171 (987)
Q Consensus 94 Y~~~~~~k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi 171 (987)
+..-..- -++|.-.+| -.|.+|.|++ ...+|+-|+-+-.|=.+....+.. +.+|...-+ ..|.++
T Consensus 255 ~~DmR~l-~~p~~v~~dhvsAV~dVdfsp------tG~EfvsgsyDksIRIf~~~~~~S-----RdiYhtkRM-q~V~~V 321 (433)
T KOG0268|consen 255 TYDMRNL-SRPLNVHKDHVSAVMDVDFSP------TGQEFVSGSYDKSIRIFPVNHGHS-----RDIYHTKRM-QHVFCV 321 (433)
T ss_pred ehhhhhh-cccchhhcccceeEEEeccCC------CcchhccccccceEEEeecCCCcc-----hhhhhHhhh-heeeEE
Confidence 3322111 133443455 4788999983 235899999888887777665422 334433322 248888
Q ss_pred EEEeeccCCCceEEEEEECCCeEEEEecC
Q 001978 172 QMETASLSNGTRYYVMAVTPTRLYSFTGF 200 (987)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~~rly~f~g~ 200 (987)
.|. .+.++++-.|....+--|.+.
T Consensus 322 k~S-----~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 322 KYS-----MDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred EEe-----ccccEEEecCCCcceeeeecc
Confidence 886 345788877776667667664
No 193
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=78.50 E-value=3.7 Score=40.23 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=25.3
Q ss_pred HHHchhhHHHHHHhcCC-------chhHhHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 001978 370 VYLDMKEYAAALANCRD-------PLQRDQVYLVQAEAAFATKDFHRAASFYAKI 417 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-------~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~ 417 (987)
.+++.|+|++|....+. +.-+.....+.|.-++..|+|++|...+...
T Consensus 57 ~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 57 AAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI 111 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 45566666666655331 1123444555566666666666666665443
No 194
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=78.24 E-value=19 Score=39.98 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=45.5
Q ss_pred hHHHHHhhcC--------CCceeEEEEeCCEE---EEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC
Q 001978 11 DVLERYAAKG--------RGVITCMSAGNDVI---VLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP 75 (987)
Q Consensus 11 ~~~~~~~~~~--------~~~i~~~~v~nn~l---~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp 75 (987)
.++++.|++. +|-|.|||-+.+.| +-|-.+|.|..||+ +.+....++.+ .+-|.+|-+|.
T Consensus 48 tKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH-----~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 48 TKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAH-----EGLVRGICVTQ 119 (433)
T ss_pred HHHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecc-----cCceeeEEecc
Confidence 4566666653 45689999999985 77888999999999 77777777776 35677777776
No 195
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=78.22 E-value=19 Score=40.16 Aligned_cols=146 Identities=11% Similarity=0.057 Sum_probs=81.1
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccC--
Q 001978 31 NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSK-- 107 (987)
Q Consensus 31 nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~k-- 107 (987)
.+-++-|..+|+|..||+ ......++.-. .....+.+-+...|+-++-|.. +|..+.++..+-|+.....
T Consensus 202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~----e~~~~~~~~~~~~~~~~~~g~~---e~~~~~~~~~sgKVv~~~n~~ 274 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKTGQPLHKITQA----EGLELPCISLNLAGSTLTKGNS---EGVACGVNNGSGKVVNCNNGT 274 (399)
T ss_pred CceEEEEecCceEEEEecCCCceeEEeccc----ccCcCCccccccccceeEeccC---CccEEEEccccceEEEecCCC
Confidence 456788889999999999 44332222100 0112233444444544444433 4555555544444333221
Q ss_pred ------CCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCC
Q 001978 108 ------LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNG 181 (987)
Q Consensus 108 ------lkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~ 181 (987)
-....++||.+.+. ++. -.=+-+|.=+|.|..+.+-.. .++.....+ .+|+.+.|..
T Consensus 275 ~~~l~~~~e~~~esve~~~~-ss~--lpL~A~G~vdG~i~iyD~a~~-----~~R~~c~he---~~V~~l~w~~------ 337 (399)
T KOG0296|consen 275 VPELKPSQEELDESVESIPS-SSK--LPLAACGSVDGTIAIYDLAAS-----TLRHICEHE---DGVTKLKWLN------ 337 (399)
T ss_pred Cccccccchhhhhhhhhccc-ccc--cchhhcccccceEEEEecccc-----hhheeccCC---CceEEEEEcC------
Confidence 12345666666622 111 123557888898888766442 234433443 5699999973
Q ss_pred ceEEEEEECCCeEEEEecC
Q 001978 182 TRYYVMAVTPTRLYSFTGF 200 (987)
Q Consensus 182 ~~~~i~ast~~rly~f~g~ 200 (987)
..+++-++.+..+++|..+
T Consensus 338 t~~l~t~c~~g~v~~wDaR 356 (399)
T KOG0296|consen 338 TDYLLTACANGKVRQWDAR 356 (399)
T ss_pred cchheeeccCceEEeeecc
Confidence 3566666669999999763
No 196
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=78.18 E-value=7.9 Score=29.38 Aligned_cols=33 Identities=9% Similarity=0.135 Sum_probs=29.1
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC-CCCCce
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSY 54 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~ 54 (987)
+.+..++|..|.+|++..++-|..+|+ +|....
T Consensus 2 G~a~~v~v~g~yaYva~~~~Gl~IvDISnPs~P~ 35 (42)
T PF08309_consen 2 GDARDVAVSGNYAYVADGNNGLVIVDISNPSNPV 35 (42)
T ss_pred ceEEEEEEECCEEEEEeCCCCEEEEECCCCCCCE
Confidence 457899999999999998888999999 988754
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=78.12 E-value=93 Score=36.60 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=58.7
Q ss_pred CCceeEEEEeCCEE-EEEecCCeEEEEeCCCC-CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE---E
Q 001978 21 RGVITCMSAGNDVI-VLGTSKGWLIRHDFGAG-DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY---T 95 (987)
Q Consensus 21 ~~~i~~~~v~nn~l-~~~~~~g~l~ridl~~~-~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y---~ 95 (987)
..+|-|++-..|-- ++-+..|.++.=-|.|+ .+-+-.-+ ++-|..+--.|+.. +|.+. |+-|= +
T Consensus 145 ~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAH-----DGiiL~~~W~~~s~--lI~sg----GED~kfKvW 213 (737)
T KOG1524|consen 145 EESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAH-----DGLVLSLSWSTQSN--IIASG----GEDFRFKIW 213 (737)
T ss_pred CceeEEEEECCCCCceEEecCCeEEEeecccccceeEEecc-----CcEEEEeecCcccc--ceeec----CCceeEEee
Confidence 35688888765532 33345566666566333 34444444 45666665566554 33332 44431 2
Q ss_pred ecCCCCceeccCCCCceEEEEeecCCCC-----------CCC------------CcceEEEEcCCCcEEEEEe
Q 001978 96 HAKWSKPRVLSKLKGLVVNAVAWNRQQI-----------TEA------------STKEIILGTDTGQLHEMAV 145 (987)
Q Consensus 96 ~~~~~k~k~L~klkg~~i~sVaw~~~~~-----------~~~------------st~~iLiGt~~G~i~e~~i 145 (987)
...- ++-.-+.-..+.|+|||||++.. .+. +.-.+-+||..|+++.+.+
T Consensus 214 D~~G-~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 214 DAQG-ANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred cccC-cccccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 2211 11111223567888888886521 111 1225667899999887654
No 198
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.96 E-value=1.3 Score=50.59 Aligned_cols=35 Identities=26% Similarity=0.687 Sum_probs=27.5
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
++..-.|.+|...+.. ++ +-+|||.|+..|+...+
T Consensus 23 Le~~l~C~IC~d~~~~------------------Pv-itpCgH~FCs~CI~~~l 57 (397)
T TIGR00599 23 LDTSLRCHICKDFFDV------------------PV-LTSCSHTFCSLCIRRCL 57 (397)
T ss_pred cccccCCCcCchhhhC------------------cc-CCCCCCchhHHHHHHHH
Confidence 4456789999987655 54 57999999999998754
No 199
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=77.45 E-value=2.1 Score=38.45 Aligned_cols=47 Identities=23% Similarity=0.536 Sum_probs=29.7
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEEc-CCChhHHHhHHHHH
Q 001978 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFP-CGHAFHAQCLIAHV 883 (987)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFp-CgH~fH~~CL~~~~ 883 (987)
+.|++|+--|....+. .+... +.....-.|+.. |.|+||..|+.+-+
T Consensus 47 DnCAICRnHIMd~Cie--CQa~~-~~~~~EC~VaWG~CNHaFH~hCisrWl 94 (114)
T KOG2930|consen 47 DNCAICRNHIMDLCIE--CQANQ-SATSEECTVAWGVCNHAFHFHCISRWL 94 (114)
T ss_pred chhHHHHHHHHHHHHh--hccCC-CCCCCceEEEeeecchHHHHHHHHHHH
Confidence 6899999888875552 11111 111111345555 99999999998765
No 200
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.16 E-value=84 Score=34.64 Aligned_cols=148 Identities=15% Similarity=0.106 Sum_probs=85.2
Q ss_pred ceeEEEEeC-CEEEEEecCCe-EEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 23 VITCMSAGN-DVIVLGTSKGW-LIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 23 ~i~~~~v~n-n~l~~~~~~g~-l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
.|+.++++. +-|++...... +-.||| ++-.. +-++.+. .-+.|-.+|.|.|..|... ++---|=....
T Consensus 129 ~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a--~v~~L~~----~at~v~w~~~Gd~F~v~~~---~~i~i~q~d~A 199 (362)
T KOG0294|consen 129 QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA--FVLNLKN----KATLVSWSPQGDHFVVSGR---NKIDIYQLDNA 199 (362)
T ss_pred ccceeEecCCCceEEEEcCCceeeeehhhcCccc--eeeccCC----cceeeEEcCCCCEEEEEec---cEEEEEecccH
Confidence 488888885 57777776644 445688 54443 2233322 2234666799998888776 55544433222
Q ss_pred CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccC
Q 001978 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLS 179 (987)
Q Consensus 100 ~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~ 179 (987)
.=++.+.+- ..+-|+.|.. ....++|..++.|-...-+. .+.++.+..-+..|-+|.....
T Consensus 200 ~v~~~i~~~--~r~l~~~~l~-------~~~L~vG~d~~~i~~~D~ds-------~~~~~~~~AH~~RVK~i~~~~~--- 260 (362)
T KOG0294|consen 200 SVFREIENP--KRILCATFLD-------GSELLVGGDNEWISLKDTDS-------DTPLTEFLAHENRVKDIASYTN--- 260 (362)
T ss_pred hHhhhhhcc--ccceeeeecC-------CceEEEecCCceEEEeccCC-------CccceeeecchhheeeeEEEec---
Confidence 222333321 3588899982 23799999998665543221 1222222211245777775432
Q ss_pred CCceEEEEEECCCeEEEEe
Q 001978 180 NGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 180 ~~~~~~i~ast~~rly~f~ 198 (987)
++..+++-|++...+--|.
T Consensus 261 ~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 261 PEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred CCceEEEEeccCceEEEEE
Confidence 2345788888888888885
No 201
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.05 E-value=0.88 Score=44.70 Aligned_cols=17 Identities=35% Similarity=0.903 Sum_probs=14.4
Q ss_pred EcCCChhHHHhHHHHHh
Q 001978 868 FPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 868 FpCgH~fH~~CL~~~~~ 884 (987)
-.||..||+-||..-..
T Consensus 188 ~qCgkpFHqiCL~dWLR 204 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLR 204 (234)
T ss_pred cccCCcHHHHHHHHHHH
Confidence 36999999999988763
No 202
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=77.00 E-value=38 Score=34.68 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=38.2
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|++..+.. ..........|..++..|+|++|.+.|.+..
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 92 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRAL 92 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 577889999999887531 1224566778999999999999999998775
No 203
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=76.72 E-value=18 Score=41.71 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=38.8
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEee
Q 001978 31 NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIV 85 (987)
Q Consensus 31 nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~ 85 (987)
.|+++.|+.+|+|..+|. .++-+++++=++ +.|..|-.=|.|...+.+++
T Consensus 312 ~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL-----g~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 312 QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL-----GAILDITFVDEGRRFISSSD 362 (503)
T ss_pred CcEEEEecCCCcEEEEeccchHHHHHHHhhh-----hheeeeEEccCCceEeeecc
Confidence 389999999999999999 777788887664 34565655567777777776
No 204
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=76.72 E-value=1.5e+02 Score=34.30 Aligned_cols=277 Identities=16% Similarity=0.105 Sum_probs=137.6
Q ss_pred HHchhhHHHHHHhcCC-ch---hHhHHHHHHHHHHHhcCCHHHHHHHHHhhcC--CCC-hHH--H-HHHhcCcChHHHHH
Q 001978 371 YLDMKEYAAALANCRD-PL---QRDQVYLVQAEAAFATKDFHRAASFYAKINY--ILS-FEE--I-TLKFISVSEQDALR 440 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~-~~---~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~--~~~-~E~--v-~lkFl~~~~~~~L~ 440 (987)
.+..|+|+.|.+.... +. ....-+...+......|+++.|.++|.+... ... +.. . ....+..++.+.-.
T Consensus 94 a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 94 KLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred HHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 3445888888877543 22 1223344556776889999999888877641 111 111 0 12334456666555
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHH
Q 001978 441 TFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLES 520 (987)
Q Consensus 441 ~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~ 520 (987)
.++....+.-+++.. ...++.++|+.. ++ .+...+-+....+. ..++.+..-++..
T Consensus 174 ~~l~~~~~~~P~~~~-----al~ll~~~~~~~-gd---------------w~~a~~~l~~l~k~--~~~~~~~~~~l~~- 229 (398)
T PRK10747 174 HGVDKLLEVAPRHPE-----VLRLAEQAYIRT-GA---------------WSSLLDILPSMAKA--HVGDEEHRAMLEQ- 229 (398)
T ss_pred HHHHHHHhcCCCCHH-----HHHHHHHHHHHH-Hh---------------HHHHHHHHHHHHHc--CCCCHHHHHHHHH-
Confidence 666655544443322 223455555521 11 11111111111110 1112221111110
Q ss_pred cCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCC----CchhhHHhhHHHHHh-HChHHHHHHHHcCCCCCCC
Q 001978 521 YGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPA----VPIDLQYKFAPDLIM-LDAYETVESWMTTNNLNPR 595 (987)
Q Consensus 521 ~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~----~~~~li~k~~~~Ll~-~~p~~ti~~l~~~~~ld~~ 595 (987)
.-|..++..-....+-+...++|.+++ +..++...|+..++. .+++++...+.+.-+.++.
T Consensus 230 --------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~ 295 (398)
T PRK10747 230 --------------QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD 295 (398)
T ss_pred --------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 011112222223334455555555543 235677788888775 4556666665433121221
Q ss_pred -cchhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCCh
Q 001978 596 -KLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDP 674 (987)
Q Consensus 596 -~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~ 674 (987)
.++........ .++..++..++....+.+ .++.++-.+-.++...++-.+-..+++..-. .. -+.
T Consensus 296 ~~l~~l~~~l~~-----~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~----~~----P~~ 361 (398)
T PRK10747 296 ERLVLLIPRLKT-----NNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALK----QR----PDA 361 (398)
T ss_pred HHHHHHHhhccC-----CChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cC----CCH
Confidence 12211111111 245668889988886655 5788888888888887766777777777611 00 011
Q ss_pred HHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh
Q 001978 675 KYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ 709 (987)
Q Consensus 675 ~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~ 709 (987)
...+. ...++.++|++++|.+++-+
T Consensus 362 ~~~~~----------La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 362 YDYAW----------LADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHH----------HHHHHHHcCCHHHHHHHHHH
Confidence 11112 34567888888888776653
No 205
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.70 E-value=63 Score=39.72 Aligned_cols=165 Identities=13% Similarity=0.132 Sum_probs=99.7
Q ss_pred eeEEEEeCC-EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEE-eecCCCccEEEEecCCCC
Q 001978 24 ITCMSAGND-VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT-IVGSGGAETFYTHAKWSK 101 (987)
Q Consensus 24 i~~~~v~nn-~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~-~~~~~~g~~~Y~~~~~~k 101 (987)
|-.+.-+.| +|.=+--+.+|-.|++.-.+.-.+=.| ..-|+.|=+.|.-..-+|+ +- ||.+=-|+..-.+
T Consensus 372 ILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~H-----ndfVTcVaFnPvDDryFiSGSL---D~KvRiWsI~d~~ 443 (712)
T KOG0283|consen 372 ILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSH-----NDFVTCVAFNPVDDRYFISGSL---DGKVRLWSISDKK 443 (712)
T ss_pred heecccccCCeeEeccccccEEeecCCCcceeeEEec-----CCeeEEEEecccCCCcEeeccc---ccceEEeecCcCe
Confidence 566666554 444455567788888833332222223 2678889889976555554 44 7888888876666
Q ss_pred ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeee-eeeCC---C-CCceeeEEEEee
Q 001978 102 PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLL-FELNE---L-PEAFMGLQMETA 176 (987)
Q Consensus 102 ~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v-~~l~~---~-~~~I~gi~~~~~ 176 (987)
+-.=..++ -.|++|++.|+ .+-.||||-+|....+...+. ++.... ..+.. . ...|||+++..
T Consensus 444 Vv~W~Dl~-~lITAvcy~Pd------Gk~avIGt~~G~C~fY~t~~l----k~~~~~~I~~~~~Kk~~~~rITG~Q~~p- 511 (712)
T KOG0283|consen 444 VVDWNDLR-DLITAVCYSPD------GKGAVIGTFNGYCRFYDTEGL----KLVSDFHIRLHNKKKKQGKRITGLQFFP- 511 (712)
T ss_pred eEeehhhh-hhheeEEeccC------CceEEEEEeccEEEEEEccCC----eEEEeeeEeeccCccccCceeeeeEecC-
Confidence 65555555 37999999954 246999999999988887654 122111 12221 1 23599999874
Q ss_pred ccCCCceEEEEEECCCeEEEEecCC-chHHHHhhhh
Q 001978 177 SLSNGTRYYVMAVTPTRLYSFTGFG-SLDTVFASYL 211 (987)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~g~~-~l~~lf~~~~ 211 (987)
+.. .-+++.|.+.|+--|.|.. .+...|..+.
T Consensus 512 -~~~--~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~ 544 (712)
T KOG0283|consen 512 -GDP--DEVLVTSNDSRIRIYDGRDKDLVHKFKGFR 544 (712)
T ss_pred -CCC--CeEEEecCCCceEEEeccchhhhhhhcccc
Confidence 222 2344444577777777732 2444555443
No 206
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=76.05 E-value=1.8e+02 Score=34.85 Aligned_cols=34 Identities=12% Similarity=0.037 Sum_probs=29.1
Q ss_pred CCchhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 385 RDPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 385 ~~~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.....+..+...-|..++.+|+|+.|...|..+.
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al 226 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQAL 226 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3455677888889999999999999999998876
No 207
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=75.99 E-value=39 Score=37.45 Aligned_cols=144 Identities=12% Similarity=0.101 Sum_probs=81.6
Q ss_pred CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEE-EeCC-CCCeEEEEeecCCCccEEEEecCCC--Cceecc
Q 001978 32 DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKV-FVDP-GGSHCIATIVGSGGAETFYTHAKWS--KPRVLS 106 (987)
Q Consensus 32 n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i-~lDp-~G~hlli~~~~~~~g~~~Y~~~~~~--k~k~L~ 106 (987)
+.|++++++|.|..+|. ...-+++|.-|.. .++.+ |++- .++-++.|+. +|.+--+..++. +++...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~-----~~N~vrf~~~ds~h~v~s~ss---DG~Vr~wD~Rs~~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPA-----TTNGVRFISCDSPHGVISCSS---DGTVRLWDIRSQAESARISW 112 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCC-----cccceEEecCCCCCeeEEecc---CCeEEEEEeecchhhhheec
Confidence 57899999999999999 7666888887743 23333 2333 4544666666 898877765554 233322
Q ss_pred C-CCCceEEEEeecCCCCCCCCcceEEEEcCC----CcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCC
Q 001978 107 K-LKGLVVNAVAWNRQQITEASTKEIILGTDT----GQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNG 181 (987)
Q Consensus 107 k-lkg~~i~sVaw~~~~~~~~st~~iLiGt~~----G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~ 181 (987)
+ -.|-...|++-|- ..+-|-+||.. ..++.. +.+. ..+-+.++.+... .-||.|.|.. ++
T Consensus 113 ~~~~~~~f~~ld~nc------k~~ii~~GtE~~~s~A~v~lw--DvR~-~qq~l~~~~eSH~--DDVT~lrFHP----~~ 177 (376)
T KOG1188|consen 113 TQQSGTPFICLDLNC------KKNIIACGTELTRSDASVVLW--DVRS-EQQLLRQLNESHN--DDVTQLRFHP----SD 177 (376)
T ss_pred cCCCCCcceEeeccC------cCCeEEeccccccCceEEEEE--Eecc-ccchhhhhhhhcc--CcceeEEecC----CC
Confidence 1 1123566666651 12356667754 333333 3321 1122444444443 3499999873 33
Q ss_pred ceEEEEEECCCeEEEEe
Q 001978 182 TRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 182 ~~~~i~ast~~rly~f~ 198 (987)
...++-.|+..-+--|.
T Consensus 178 pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFD 194 (376)
T ss_pred CCeEEeecccceEEeee
Confidence 45666666666544443
No 208
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=75.63 E-value=14 Score=43.67 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=69.2
Q ss_pred hHHHHHhhcCCCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCC-ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeec
Q 001978 11 DVLERYAAKGRGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVG 86 (987)
Q Consensus 11 ~~~~~~~~~~~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~ 86 (987)
..+.+.+..|..-|++|+++. +.|++|.-.+++.-+|+ -.+. .....++. ..++.+-.++.=--+..+++
T Consensus 597 qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~-----~avr~Va~H~ryPLfas~sd- 670 (733)
T KOG0650|consen 597 QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE-----KAVRSVAFHKRYPLFASGSD- 670 (733)
T ss_pred HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh-----hhhhhhhhccccceeeeecC-
Confidence 456677778888899999999 89999999999999999 4433 34444542 34555655543332333333
Q ss_pred CCCccEEEEec-------CCCCceeccCCCCceEE------EEeecCC
Q 001978 87 SGGAETFYTHA-------KWSKPRVLSKLKGLVVN------AVAWNRQ 121 (987)
Q Consensus 87 ~~~g~~~Y~~~-------~~~k~k~L~klkg~~i~------sVaw~~~ 121 (987)
+|+.+..|. +.+-..+|.+|+|+..+ .+.|.+.
T Consensus 671 --Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~ 716 (733)
T KOG0650|consen 671 --DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR 716 (733)
T ss_pred --CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCC
Confidence 677754442 33446789999998665 6779853
No 209
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=75.57 E-value=1.4 Score=47.37 Aligned_cols=45 Identities=24% Similarity=0.586 Sum_probs=32.4
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHH---HhhcCCHHHHHHHHH
Q 001978 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAH---VTQCTNETQAEYILD 897 (987)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~---~~~~~~~~~~~~i~~ 897 (987)
--|..|+++|.-+| | +.||.|+|-.+|.... +++.+++ .-.||++
T Consensus 91 HfCd~Cd~PI~IYG---R---------------mIPCkHvFCl~CAr~~~dK~Cp~C~d-~VqrIeq 138 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYG---R---------------MIPCKHVFCLECARSDSDKICPLCDD-RVQRIEQ 138 (389)
T ss_pred EeecccCCcceeee---c---------------ccccchhhhhhhhhcCccccCcCccc-HHHHHHH
Confidence 36999999988766 5 5699999999999875 4555543 3334443
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=75.46 E-value=8.6 Score=48.96 Aligned_cols=55 Identities=24% Similarity=0.340 Sum_probs=43.9
Q ss_pred CCCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCC
Q 001978 20 GRGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGS 78 (987)
Q Consensus 20 ~~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~ 78 (987)
..|.||+++|.. ++|++|++.|++..||| -...+....-|. ...|+++|++|+-.
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~----~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA----RAPIRHVWLCPTYP 1251 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcc----cCCcceEEeeccCC
Confidence 346899999864 69999999999999999 555566666663 47899999999744
No 211
>PRK02889 tolB translocation protein TolB; Provisional
Probab=75.42 E-value=81 Score=36.97 Aligned_cols=142 Identities=13% Similarity=0.145 Sum_probs=78.0
Q ss_pred CCEEEEEecC--CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC
Q 001978 31 NDVIVLGTSK--GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL 108 (987)
Q Consensus 31 nn~l~~~~~~--g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl 108 (987)
..+.++...+ ..|+.+|........+.-. ...+...-..|.|++++..+...+....|.++....+.+.+..+
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~-----~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~ 238 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADGQNAQSALSS-----PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF 238 (427)
T ss_pred cEEEEEEccCCccEEEEECCCCCCceEeccC-----CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC
Confidence 4555555433 3677878833333322111 24566777889999988876522223455566655566777766
Q ss_pred CCceEEEEeecCCCCCCCCcceEEEE-cCCCc--EEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEE
Q 001978 109 KGLVVNAVAWNRQQITEASTKEIILG-TDTGQ--LHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYY 185 (987)
Q Consensus 109 kg~~i~sVaw~~~~~~~~st~~iLiG-t~~G~--i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~ 185 (987)
+| .+.+++|.++ .+.+++. +.+|. ||.+.+..+ ..+++..- .+..+...|. .+.+.+
T Consensus 239 ~g-~~~~~~~SPD------G~~la~~~~~~g~~~Iy~~d~~~~-----~~~~lt~~---~~~~~~~~wS-----pDG~~l 298 (427)
T PRK02889 239 KG-SNSAPAWSPD------GRTLAVALSRDGNSQIYTVNADGS-----GLRRLTQS---SGIDTEPFFS-----PDGRSI 298 (427)
T ss_pred CC-CccceEECCC------CCEEEEEEccCCCceEEEEECCCC-----CcEECCCC---CCCCcCeEEc-----CCCCEE
Confidence 66 4568999943 2256654 45564 666655432 13333221 1234455564 233567
Q ss_pred EEEECC---CeEEEE
Q 001978 186 VMAVTP---TRLYSF 197 (987)
Q Consensus 186 i~ast~---~rly~f 197 (987)
+++++. ..+|.+
T Consensus 299 ~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 299 YFTSDRGGAPQIYRM 313 (427)
T ss_pred EEEecCCCCcEEEEE
Confidence 776652 356654
No 212
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=75.28 E-value=2.1 Score=37.72 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=29.5
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCC
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTN 888 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~ 888 (987)
.-+|.+||.++.. . ..|-..+ .-+.|.+|+......-.+
T Consensus 6 ewkC~VCg~~iie-----G-----------qkFTF~~-kGsVH~eCl~~s~~~k~~ 44 (103)
T COG4847 6 EWKCYVCGGTIIE-----G-----------QKFTFTK-KGSVHYECLAESKRKKPG 44 (103)
T ss_pred eeeEeeeCCEeee-----c-----------cEEEEee-CCcchHHHHHHHHhcCcC
Confidence 3489999999887 3 1566666 888999999988655544
No 213
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=75.22 E-value=1.3e+02 Score=35.23 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=42.3
Q ss_pred CceeEEEEeCC-EEEEEecCCeEEEEeCCCCCceeeEcCCCCC----CccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 22 GVITCMSAGND-VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRP----GEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 22 ~~i~~~~v~nn-~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~----~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
+.|.+|...++ .|++.+.+|++..+|+.++. ++.++.... .+.+|-.++.-.+| ++|.|. ++..|++.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~---~~~~~~v~ 153 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTG---NNRFYVVN 153 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccCCCC--EEEECC---CCeEEEEe
Confidence 57888888554 78888999999999994443 344332210 12344444555577 444455 57766664
Q ss_pred c
Q 001978 97 A 97 (987)
Q Consensus 97 ~ 97 (987)
.
T Consensus 154 n 154 (410)
T PF04841_consen 154 N 154 (410)
T ss_pred C
Confidence 4
No 214
>PRK04922 tolB translocation protein TolB; Provisional
Probab=75.14 E-value=86 Score=36.80 Aligned_cols=132 Identities=11% Similarity=0.149 Sum_probs=74.8
Q ss_pred eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEeecCC
Q 001978 42 WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQ 121 (987)
Q Consensus 42 ~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~ 121 (987)
.|+++|....+...+ . . +...+.....+|.|.+++.++...+....|.++....+.+.+..++| ...+++|+++
T Consensus 185 ~l~i~D~~g~~~~~l--t--~-~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g-~~~~~~~SpD 258 (433)
T PRK04922 185 ALQVADSDGYNPQTI--L--R-SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRG-INGAPSFSPD 258 (433)
T ss_pred EEEEECCCCCCceEe--e--c-CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCC-CccCceECCC
Confidence 577788833333222 1 1 13456677778999998887652223456666766666677776666 3457899843
Q ss_pred CCCCCCcceEEEE-cCCC--cEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECC---CeEE
Q 001978 122 QITEASTKEIILG-TDTG--QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTP---TRLY 195 (987)
Q Consensus 122 ~~~~~st~~iLiG-t~~G--~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~---~rly 195 (987)
.+.+++. +.+| .||...+..+ .++++..-. +..+...|. .+.+.+++++.. ..+|
T Consensus 259 ------G~~l~~~~s~~g~~~Iy~~d~~~g-----~~~~lt~~~---~~~~~~~~s-----pDG~~l~f~sd~~g~~~iy 319 (433)
T PRK04922 259 ------GRRLALTLSRDGNPEIYVMDLGSR-----QLTRLTNHF---GIDTEPTWA-----PDGKSIYFTSDRGGRPQIY 319 (433)
T ss_pred ------CCEEEEEEeCCCCceEEEEECCCC-----CeEECccCC---CCccceEEC-----CCCCEEEEEECCCCCceEE
Confidence 2256554 3445 5888877543 134432221 223455664 233677776642 3477
Q ss_pred EEe
Q 001978 196 SFT 198 (987)
Q Consensus 196 ~f~ 198 (987)
.+.
T Consensus 320 ~~d 322 (433)
T PRK04922 320 RVA 322 (433)
T ss_pred EEE
Confidence 553
No 215
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=75.09 E-value=58 Score=37.25 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=63.9
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce
Q 001978 25 TCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR 103 (987)
Q Consensus 25 ~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k 103 (987)
...++.++.++++..+|.|+.+|. +...+-+.+++.... ...-+ .+..+++.+. +|..|-++...-+.+
T Consensus 59 ~~p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~-----~~p~v--~~~~v~v~~~---~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 59 LQPAVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLS-----GGVGA--DGGLVFVGTE---KGEVIALDAEDGKEL 128 (377)
T ss_pred cceEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc-----cceEE--cCCEEEEEcC---CCEEEEEECCCCcEe
Confidence 456788999999999999999998 666666666653211 11122 2567777766 677776765433221
Q ss_pred eccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 104 VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 104 ~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
--.++.+ .+. ..+.. ..+.+++++.+|.||-.....+
T Consensus 129 W~~~~~~-~~~----~~p~v---~~~~v~v~~~~g~l~a~d~~tG 165 (377)
T TIGR03300 129 WRAKLSS-EVL----SPPLV---ANGLVVVRTNDGRLTALDAATG 165 (377)
T ss_pred eeeccCc-eee----cCCEE---ECCEEEEECCCCeEEEEEcCCC
Confidence 1111222 111 11111 1347899999999988776544
No 216
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=74.96 E-value=4.3 Score=31.92 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=16.4
Q ss_pred CEEEEcCC-----ChhHHHhHHHHHh
Q 001978 864 PFYVFPCG-----HAFHAQCLIAHVT 884 (987)
Q Consensus 864 ~fvvFpCg-----H~fH~~CL~~~~~ 884 (987)
...+-||. |.+|..||..-+.
T Consensus 13 ~~l~~PC~C~G~~~~vH~~Cl~~W~~ 38 (49)
T smart00744 13 DPLVSPCRCKGSLKYVHQECLERWIN 38 (49)
T ss_pred CeeEeccccCCchhHHHHHHHHHHHH
Confidence 33467985 9999999998763
No 217
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=74.80 E-value=1.3e+02 Score=32.40 Aligned_cols=100 Identities=9% Similarity=0.033 Sum_probs=61.4
Q ss_pred CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCc-eeccCCC
Q 001978 32 DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKP-RVLSKLK 109 (987)
Q Consensus 32 n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~-k~L~klk 109 (987)
++++-+..+|.|.++|+ ....+..+..+ ..+..+-++|.|..++++.. .++..+.++....+. +.+. .
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~------~~~~~l~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~--~ 71 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVG------QRPRGITLSKDGKLLYVCAS--DSDTIQVIDLATGEVIGTLP--S 71 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECC------CCCCceEECCCCCEEEEEEC--CCCeEEEEECCCCcEEEecc--C
Confidence 34555667899999999 55545555433 23466888999998877643 156666666554433 2233 2
Q ss_pred CceEEEEeecCCCCCCCCcceEEEEc-CCCcEEEEEecc
Q 001978 110 GLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDE 147 (987)
Q Consensus 110 g~~i~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~ 147 (987)
+..+..++|++. .+.+++++ .+|.|....+..
T Consensus 72 ~~~~~~~~~~~~------g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 72 GPDPELFALHPN------GKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred CCCccEEEECCC------CCEEEEEcCCCCeEEEEECCC
Confidence 345678899832 22354543 468888776654
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=74.78 E-value=99 Score=36.25 Aligned_cols=133 Identities=10% Similarity=0.110 Sum_probs=75.8
Q ss_pred CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEeecC
Q 001978 41 GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNR 120 (987)
Q Consensus 41 g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~ 120 (987)
..|+.+|.+..+.. .+.. +...+...-..|.|.+++.++...++...|.++....+.+.+..++|+ ..+++|++
T Consensus 184 ~~i~i~d~dg~~~~--~lt~---~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~-~~~~~wSP 257 (429)
T PRK01742 184 YEVRVADYDGFNQF--IVNR---SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH-NGAPAFSP 257 (429)
T ss_pred EEEEEECCCCCCce--Eecc---CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc-cCceeECC
Confidence 47888888333322 1221 135677888899999998776521123455566655556667767764 45799994
Q ss_pred CCCCCCCcceEEEEc-CCCc--EEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEEC---CCeE
Q 001978 121 QQITEASTKEIILGT-DTGQ--LHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT---PTRL 194 (987)
Q Consensus 121 ~~~~~~st~~iLiGt-~~G~--i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast---~~rl 194 (987)
+ ...++++. .+|. ||...+..+ ..+++.. .++.+.+..|.. +.+.+++++. ..++
T Consensus 258 D------G~~La~~~~~~g~~~Iy~~d~~~~-----~~~~lt~---~~~~~~~~~wSp-----DG~~i~f~s~~~g~~~I 318 (429)
T PRK01742 258 D------GSRLAFASSKDGVLNIYVMGANGG-----TPSQLTS---GAGNNTEPSWSP-----DGQSILFTSDRSGSPQV 318 (429)
T ss_pred C------CCEEEEEEecCCcEEEEEEECCCC-----CeEeecc---CCCCcCCEEECC-----CCCEEEEEECCCCCceE
Confidence 3 23576654 5674 555554432 1333322 224467777752 2356676664 3467
Q ss_pred EEEe
Q 001978 195 YSFT 198 (987)
Q Consensus 195 y~f~ 198 (987)
|.+.
T Consensus 319 ~~~~ 322 (429)
T PRK01742 319 YRMS 322 (429)
T ss_pred EEEE
Confidence 7653
No 219
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=74.78 E-value=1.2e+02 Score=35.30 Aligned_cols=119 Identities=8% Similarity=0.079 Sum_probs=77.0
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEecC-CCCceeccCCCCceEEEEeecCCCC--CCCCcceEEE-EcCCCcE
Q 001978 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK-WSKPRVLSKLKGLVVNAVAWNRQQI--TEASTKEIIL-GTDTGQL 140 (987)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~-~~k~k~L~klkg~~i~sVaw~~~~~--~~~st~~iLi-Gt~~G~i 140 (987)
..+|.-|--||+|.-|+.|++ ||..=-++.. ..-+.-|.- ....|-++-|.|... +....+.+|+ ...++.|
T Consensus 359 ~g~V~alk~n~tg~LLaS~Sd---D~TlkiWs~~~~~~~~~l~~-Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV 434 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSD---DGTLKIWSMGQSNSVHDLQA-HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTV 434 (524)
T ss_pred cCceEEEEECCCCceEEEecC---CCeeEeeecCCCcchhhhhh-hccceeeEeecCCCCccCCCcCCceEEEeecCCeE
Confidence 468999999999999999998 8988777743 322223321 234688888875432 1123444444 4567777
Q ss_pred EEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 141 HEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 141 ~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
-...+..+ .+++.+..-.+||..+.+. ++.++++--+++.++.-|..
T Consensus 435 ~lwdv~~g-------v~i~~f~kH~~pVysvafS-----~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 435 KLWDVESG-------VPIHTLMKHQEPVYSVAFS-----PNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred EEEEccCC-------ceeEeeccCCCceEEEEec-----CCCcEEEecCCCCeeEeccc
Confidence 66666543 4455664434789999986 33467777667777776754
No 220
>PRK04792 tolB translocation protein TolB; Provisional
Probab=74.72 E-value=1e+02 Score=36.41 Aligned_cols=145 Identities=11% Similarity=0.124 Sum_probs=78.6
Q ss_pred EeCCEEEEEecCC-----eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce
Q 001978 29 AGNDVIVLGTSKG-----WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR 103 (987)
Q Consensus 29 v~nn~l~~~~~~g-----~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k 103 (987)
+..++.|+....| .|+..|.+..+...+ .. +...+...-.+|.|.+++..+...+....|.++....+.+
T Consensus 181 f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l-~~----~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~ 255 (448)
T PRK04792 181 FLTRIAYVVVNDKDKYPYQLMIADYDGYNEQML-LR----SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE 255 (448)
T ss_pred ccCEEEEEEeeCCCCCceEEEEEeCCCCCceEe-ec----CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE
Confidence 3445555555443 566667732222211 11 1245666777899999888765222335666666666667
Q ss_pred eccCCCCceEEEEeecCCCCCCCCcceEEE-EcCCCc--EEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCC
Q 001978 104 VLSKLKGLVVNAVAWNRQQITEASTKEIIL-GTDTGQ--LHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (987)
Q Consensus 104 ~L~klkg~~i~sVaw~~~~~~~~st~~iLi-Gt~~G~--i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (987)
.+..++|. ..+.+|.++ ...|++ .+.+|. ||...+..+ ..+++..-. .......|. .
T Consensus 256 ~lt~~~g~-~~~~~wSPD------G~~La~~~~~~g~~~Iy~~dl~tg-----~~~~lt~~~---~~~~~p~wS-----p 315 (448)
T PRK04792 256 KVTSFPGI-NGAPRFSPD------GKKLALVLSKDGQPEIYVVDIATK-----ALTRITRHR---AIDTEPSWH-----P 315 (448)
T ss_pred EecCCCCC-cCCeeECCC------CCEEEEEEeCCCCeEEEEEECCCC-----CeEECccCC---CCccceEEC-----C
Confidence 78777664 347899843 224655 455564 777766543 133332211 224555564 2
Q ss_pred CceEEEEEEC---CCeEEEEe
Q 001978 181 GTRYYVMAVT---PTRLYSFT 198 (987)
Q Consensus 181 ~~~~~i~ast---~~rly~f~ 198 (987)
+.+++++.+. ...+|.+.
T Consensus 316 DG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 316 DGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred CCCEEEEEECCCCCceEEEEE
Confidence 2356666554 23566553
No 221
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=74.67 E-value=52 Score=38.42 Aligned_cols=164 Identities=10% Similarity=0.106 Sum_probs=94.0
Q ss_pred hhcCCCceeEEEEeCCE--EEEEecCCeEEEEeC-CCCCce-eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 17 AAKGRGVITCMSAGNDV--IVLGTSKGWLIRHDF-GAGDSY-DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 17 ~~~~~~~i~~~~v~nn~--l~~~~~~g~l~ridl-~~~~~~-~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
++-+..+|++++|-.+= ++-|--.-.|..||+ +-+... .+..-. +...-.|+.+--.|||..+++.+.++ +-
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~-P~E~h~i~sl~ys~Tg~~iLvvsg~a---qa 238 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ-PCETHQINSLQYSVTGDQILVVSGSA---QA 238 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC-cccccccceeeecCCCCeEEEEecCc---ce
Confidence 44566678899987763 455555678999999 433321 222111 11235677788889999888777632 11
Q ss_pred EEEec----------CCCCceeccCCCCc--eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeee
Q 001978 93 FYTHA----------KWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFE 160 (987)
Q Consensus 93 ~Y~~~----------~~~k~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~ 160 (987)
-.+.+ .-.-.+-|..-||| .++|.+|++. +.+.||....+|.+=.-.++..++ =++|++
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~-----~k~~FlT~s~DgtlRiWdv~~~k~----q~qVik 309 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD-----NKEEFLTCSYDGTLRIWDVNNTKS----QLQVIK 309 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccC-----cccceEEecCCCcEEEEecCCchh----heeEEe
Confidence 11111 11113445556775 7899999954 345899988999876666554322 123332
Q ss_pred eC---CCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 161 LN---ELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 161 l~---~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
-. ...-|++.-.|.+ ...+|.-+.....+-.|.
T Consensus 310 ~k~~~g~Rv~~tsC~~nr-----dg~~iAagc~DGSIQ~W~ 345 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCAWNR-----DGKLIAAGCLDGSIQIWD 345 (641)
T ss_pred eccCCCcccCceeeecCC-----CcchhhhcccCCceeeee
Confidence 21 1123567777754 123444444466777776
No 222
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=74.53 E-value=13 Score=42.86 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=70.2
Q ss_pred ccCcceehhHHHHHhhcCCCceeEEEEeCCEEEEEe-cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeE
Q 001978 3 LMRQVFQVDVLERYAAKGRGVITCMSAGNDVIVLGT-SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHC 80 (987)
Q Consensus 3 ~~~~~f~~~~~~~~~~~~~~~i~~~~v~nn~l~~~~-~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hl 80 (987)
-|+|+|.-+.+-..+..| .||.-+|-.|++.. -+.+|+.+|. ....+..+-- +.+...+-+-|.|..|
T Consensus 196 g~sp~~~~~~~HsAP~~g----icfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y------~~Plstvaf~~~G~~L 265 (673)
T KOG4378|consen 196 GMSPIFHASEAHSAPCRG----ICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY------SHPLSTVAFSECGTYL 265 (673)
T ss_pred CCCcccchhhhccCCcCc----ceecCCccceEEEecccceEEEeecccccccceeee------cCCcceeeecCCceEE
Confidence 478999888776665544 67877777664333 2348999999 3333443332 2345667788999988
Q ss_pred EEEeecCCCccEEEEecCCCC--ceeccCCCCceEEEEeecCC
Q 001978 81 IATIVGSGGAETFYTHAKWSK--PRVLSKLKGLVVNAVAWNRQ 121 (987)
Q Consensus 81 li~~~~~~~g~~~Y~~~~~~k--~k~L~klkg~~i~sVaw~~~ 121 (987)
.+-+. .|+.|.......| +++++-.+ -.|+||||-+.
T Consensus 266 ~aG~s---~G~~i~YD~R~~k~Pv~v~sah~-~sVt~vafq~s 304 (673)
T KOG4378|consen 266 CAGNS---KGELIAYDMRSTKAPVAVRSAHD-ASVTRVAFQPS 304 (673)
T ss_pred EeecC---CceEEEEecccCCCCceEeeecc-cceeEEEeeec
Confidence 88877 8999877665554 45565544 46999999843
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=74.29 E-value=1.3e+02 Score=35.21 Aligned_cols=115 Identities=15% Similarity=0.168 Sum_probs=64.2
Q ss_pred CCCceeEEEEeC--CEEEEEe-cC--CeEEEEeCCCCCceeeE-cCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 20 GRGVITCMSAGN--DVIVLGT-SK--GWLIRHDFGAGDSYDID-LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 20 ~~~~i~~~~v~n--n~l~~~~-~~--g~l~ridl~~~~~~~~~-l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
+++.+.+.+.+. +.|+++. .+ ..|+++|+...+...+. .+ +.+...-..|.|.+++++++..+..+.|
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~------g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK------GSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC------CCccceEECCCCCEEEEEEccCCCceEE
Confidence 344567777763 4565544 22 46999999322222221 11 2334566789999998765522233455
Q ss_pred EEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCC-C--cEEEEEecc
Q 001978 94 YTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT-G--QLHEMAVDE 147 (987)
Q Consensus 94 Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~-G--~i~e~~i~~ 147 (987)
-++....+.+.|..-. ....+.+|.++ .+.|+..+.+ | .||...++.
T Consensus 268 ~~d~~~~~~~~lt~~~-~~~~~~~wSpD------G~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 268 TVNADGSGLRRLTQSS-GIDTEPFFSPD------GRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred EEECCCCCcEECCCCC-CCCcCeEEcCC------CCEEEEEecCCCCcEEEEEECCC
Confidence 5566655667776533 24567889843 2256655443 3 455555443
No 224
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=73.83 E-value=1.7e+02 Score=34.00 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=68.4
Q ss_pred HHHHhhcCCCceeEEEEeCCEEEEEecCCe-EEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc
Q 001978 13 LERYAAKGRGVITCMSAGNDVIVLGTSKGW-LIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE 91 (987)
Q Consensus 13 ~~~~~~~~~~~i~~~~v~nn~l~~~~~~g~-l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~ 91 (987)
++.+..++|.+.+.+.+..|.++..-.++. +-.||+....+ .+++. +..+.|+..-+.|-..|++++-. =||.
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~---~htDYVR~g~~~~~~~hivvtGs--YDg~ 177 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELS---GHTDYVRCGDISPANDHIVVTGS--YDGK 177 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEec---CCcceeEeeccccCCCeEEEecC--CCce
Confidence 456667788889999999887755555545 55557733334 34443 22578999999999999998743 2565
Q ss_pred EEEEecCC--CCceeccCCCCceEEEEeecCC
Q 001978 92 TFYTHAKW--SKPRVLSKLKGLVVNAVAWNRQ 121 (987)
Q Consensus 92 ~~Y~~~~~--~k~k~L~klkg~~i~sVaw~~~ 121 (987)
.=-++..+ ++...|+ .|++|++|.+-++
T Consensus 178 vrl~DtR~~~~~v~eln--hg~pVe~vl~lps 207 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVELN--HGCPVESVLALPS 207 (487)
T ss_pred EEEEEeccCCceeEEec--CCCceeeEEEcCC
Confidence 54444433 3455566 8999999999854
No 225
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=73.83 E-value=72 Score=38.37 Aligned_cols=113 Identities=14% Similarity=0.208 Sum_probs=70.1
Q ss_pred CceeEEEE-e-CCE-EEEEecCCeEEEEeC--CCC-Cceee------EcCCCCCCccceeEEEeCCCCCeEEEEeecCCC
Q 001978 22 GVITCMSA-G-NDV-IVLGTSKGWLIRHDF--GAG-DSYDI------DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG 89 (987)
Q Consensus 22 ~~i~~~~v-~-nn~-l~~~~~~g~l~ridl--~~~-~~~~~------~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~ 89 (987)
|=|.|+|+ . ||. .+=|--.+.|+.||+ .++ .+..+ .++ .++...|..+-+.|+| .+|++.. ..
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~--sG~k~siYSLA~N~t~-t~ivsGg--te 192 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLG--SGPKDSIYSLAMNQTG-TIIVSGG--TE 192 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCC--CCCccceeeeecCCcc-eEEEecC--cc
Confidence 56899998 3 333 344445689999999 333 12222 222 2345788888899999 3444322 12
Q ss_pred ccEEEEecCCCCceeccCCCCc--eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 90 AETFYTHAKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 90 g~~~Y~~~~~~k~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
+..-.+.-.+. +.+.||+|| .|+++--+++ ..++|-|+++|.|=.-.+..
T Consensus 193 k~lr~wDprt~--~kimkLrGHTdNVr~ll~~dD------Gt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 193 KDLRLWDPRTC--KKIMKLRGHTDNVRVLLVNDD------GTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred cceEEeccccc--cceeeeeccccceEEEEEcCC------CCeEeecCCCceEEeeeccc
Confidence 33333333222 345678887 7999999843 23799999999887766654
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=73.77 E-value=1.5e+02 Score=34.88 Aligned_cols=116 Identities=10% Similarity=0.166 Sum_probs=68.3
Q ss_pred cCCCceeEEEEeCC--EEEEEe-c--CCeEEEEeCCCCCceeeE-cCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 19 KGRGVITCMSAGND--VIVLGT-S--KGWLIRHDFGAGDSYDID-LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 19 ~~~~~i~~~~v~nn--~l~~~~-~--~g~l~ridl~~~~~~~~~-l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
.+++.+.+.+.+.+ .|++.. . ...|+++|+...+...+. .+ ..+...-.+|.|.+++++....++...
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~------~~~~~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP------RHNGAPAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC------CCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence 34445677777754 454432 2 346899999333322221 22 123346779999999887542223356
Q ss_pred EEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCC---cEEEEEecc
Q 001978 93 FYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTG---QLHEMAVDE 147 (987)
Q Consensus 93 ~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G---~i~e~~i~~ 147 (987)
|.++....+.+.|... ...+.+.+|.++ .+.|+..+.++ .||...++.
T Consensus 270 ~~~d~~tg~~~~lt~~-~~~~~~~~wSPD------G~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 270 YVMDLASGQIRQVTDG-RSNNTEPTWFPD------SQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred EEEECCCCCEEEccCC-CCCcCceEECCC------CCEEEEEeCCCCCceEEEEECCC
Confidence 6677766677777753 246788999843 23566665543 577766654
No 227
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=73.65 E-value=83 Score=36.45 Aligned_cols=148 Identities=18% Similarity=0.258 Sum_probs=96.7
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE-EecCCCCce
Q 001978 25 TCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY-THAKWSKPR 103 (987)
Q Consensus 25 ~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y-~~~~~~k~k 103 (987)
-.+++.|+-++...+.|+.+..+. .....++++.+ +..+-.++-.||.| .+|.++ +|+..= .+...-+++
T Consensus 325 edfa~~~Gd~ia~VSRGkaFi~~~--~~~~~iqv~~~--~~VrY~r~~~~~e~--~vigt~---dgD~l~iyd~~~~e~k 395 (668)
T COG4946 325 EDFAVVNGDYIALVSRGKAFIMRP--WDGYSIQVGKK--GGVRYRRIQVDPEG--DVIGTN---DGDKLGIYDKDGGEVK 395 (668)
T ss_pred hhhccCCCcEEEEEecCcEEEECC--CCCeeEEcCCC--CceEEEEEccCCcc--eEEecc---CCceEEEEecCCceEE
Confidence 457888888888889999999887 22234566643 23666777788875 688888 786543 333444555
Q ss_pred eccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCce
Q 001978 104 VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTR 183 (987)
Q Consensus 104 ~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~ 183 (987)
...+--| .|.+|+-.++ .+-+++|..++.|..+.|+.++ ++.+ +-++ .+-|+++.|.. +.|
T Consensus 396 r~e~~lg-~I~av~vs~d------GK~~vvaNdr~el~vididngn-----v~~i-dkS~-~~lItdf~~~~-----nsr 456 (668)
T COG4946 396 RIEKDLG-NIEAVKVSPD------GKKVVVANDRFELWVIDIDNGN-----VRLI-DKSE-YGLITDFDWHP-----NSR 456 (668)
T ss_pred EeeCCcc-ceEEEEEcCC------CcEEEEEcCceEEEEEEecCCC-----eeEe-cccc-cceeEEEEEcC-----Cce
Confidence 5543233 7999999832 3468899999999999998752 2322 2221 35699999963 457
Q ss_pred EEEEEE------CCCeEEEEecC
Q 001978 184 YYVMAV------TPTRLYSFTGF 200 (987)
Q Consensus 184 ~~i~as------t~~rly~f~g~ 200 (987)
|+..+- -.-+||...|.
T Consensus 457 ~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 457 WIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred eEEEecCcceeeeeEEEEecCCC
Confidence 777642 23466666653
No 228
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=73.50 E-value=1.5e+02 Score=32.73 Aligned_cols=164 Identities=13% Similarity=0.130 Sum_probs=87.6
Q ss_pred CCceeEEEEeCCEEEEEe--cCCeEEEEeC-CCCC----ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 21 RGVITCMSAGNDVIVLGT--SKGWLIRHDF-GAGD----SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 21 ~~~i~~~~v~nn~l~~~~--~~g~l~ridl-~~~~----~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
.++|||++.++|==.+++ .+++|..||+ +-.+ ..++.+|. +.-+.+-+-|...-+++... +|...
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~-----dhpT~V~FapDc~s~vv~~~---~g~~l 157 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY-----DHPTRVVFAPDCKSVVVSVK---RGNKL 157 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC-----CCceEEEECCCcceEEEEEc---cCCEE
Confidence 357999999988555554 6788888887 3221 22344442 23466666677777777766 56666
Q ss_pred EEecCCC-------------------C-------------------------ceeccCCCCceEEEEeecCCCC---CCC
Q 001978 94 YTHAKWS-------------------K-------------------------PRVLSKLKGLVVNAVAWNRQQI---TEA 126 (987)
Q Consensus 94 Y~~~~~~-------------------k-------------------------~k~L~klkg~~i~sVaw~~~~~---~~~ 126 (987)
|+..-.. + ...|=-+||....+|-=|-... .-+
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeC
Confidence 5531000 0 0011112222222222210000 001
Q ss_pred CcceEEEE---cCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 127 STKEIILG---TDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 127 st~~iLiG---t~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
-.|+||.. |.+-.++|..... ++..+.++.+++|.+-.+.|+...|. ++.+.++-||-+...--|.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~k-dG~fqev~rvf~LkGH~saV~~~aFs-----n~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTK-DGTFQEVKRVFSLKGHQSAVLAAAFS-----NSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEecc-CcchhhhhhhheeccchhheeeeeeC-----CCcceeEEEecCCcEEEee
Confidence 13455543 4555566655433 35567778888888644456666664 4556777778777666664
No 229
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=73.42 E-value=53 Score=38.27 Aligned_cols=102 Identities=15% Similarity=0.255 Sum_probs=71.9
Q ss_pred CceeEEEEeC-CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE--ecC
Q 001978 22 GVITCMSAGN-DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT--HAK 98 (987)
Q Consensus 22 ~~i~~~~v~n-n~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~--~~~ 98 (987)
+...|++++. +.+++|+..|..+.+|....+ -+.++.- .++|+-+-..|.|..+.|.+. |+..|-. ..+
T Consensus 408 d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~--lv~~~~d---~~~ls~v~ysp~G~~lAvgs~---d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 408 DPAECADFHPSGVVAVGTATGRWFVLDTETQD--LVTIHTD---NEQLSVVRYSPDGAFLAVGSH---DNHIYIYRVSAN 479 (626)
T ss_pred CceeEeeccCcceEEEeeccceEEEEecccce--eEEEEec---CCceEEEEEcCCCCEEEEecC---CCeEEEEEECCC
Confidence 3455655542 399999999999999992222 2334321 478999999999999999988 7766532 334
Q ss_pred CCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCC
Q 001978 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTG 138 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G 138 (987)
-++...+.|-.|.+|+..-|..+ ..+|.+-+-+
T Consensus 480 g~~y~r~~k~~gs~ithLDwS~D-------s~~~~~~S~d 512 (626)
T KOG2106|consen 480 GRKYSRVGKCSGSPITHLDWSSD-------SQFLVSNSGD 512 (626)
T ss_pred CcEEEEeeeecCceeEEeeecCC-------CceEEeccCc
Confidence 44566677778899999999832 2688875543
No 230
>PF14763 HPS3_C: Hermansky-Pudlak syndrome 3, C-terminal
Probab=73.23 E-value=14 Score=40.28 Aligned_cols=93 Identities=12% Similarity=0.218 Sum_probs=63.0
Q ss_pred hhccccHHHHHHHHHhcCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhccccCC-Ch-----hhHHHHHHHHHhcCCCcC
Q 001978 694 YGMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGT-KR-----ENIRKAIAFLKETDGLLK 767 (987)
Q Consensus 694 ~~~~g~~~eAl~l~l~~di~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~~~~~~-~~-----~~i~~~l~~L~~~~~~l~ 767 (987)
..|+|.|++|++.+++.=.+.++.||+..-.+ +.+.-.|.+++--+-++-.-. .+ +.+++++.++ ...+.
T Consensus 247 ~trL~~~E~sId~LLdrCPqAVV~YA~helk~-e~~~lWWkkLLpELc~rir~~~~~~~l~ls~LKEtLsvv---A~eLe 322 (353)
T PF14763_consen 247 ITRLGEYEKSIDKLLDRCPQAVVPYANHELKE-EHQELWWKKLLPELCDRIRCGGDRQELLLSSLKETLSVV---AMELE 322 (353)
T ss_pred hhhhccHHHHHHHHHHhCcHHHHHHhhhhccc-chHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHh---hccCC
Confidence 37889999999999998899999999654322 233446888887666543211 01 1234444444 24678
Q ss_pred cccccCCCCCCcchHHHHHHHHH
Q 001978 768 IEDILPFFPDFALIDDFKEAICS 790 (987)
Q Consensus 768 i~dlL~~~p~~~~I~~~Kd~L~~ 790 (987)
..|.|..+|++-+..-|=.+|..
T Consensus 323 ~~dFLnlLPeDGtAaFFLPyLl~ 345 (353)
T PF14763_consen 323 LRDFLNLLPEDGTAAFFLPYLLY 345 (353)
T ss_pred HHHHHhhCCCccchHHHHHHHHH
Confidence 88999999998887777666543
No 231
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=72.93 E-value=76 Score=34.30 Aligned_cols=150 Identities=14% Similarity=0.167 Sum_probs=74.1
Q ss_pred EeCCEEEEEec-CCeEEEEeC-CCC-C-----ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc-EEEEec--
Q 001978 29 AGNDVIVLGTS-KGWLIRHDF-GAG-D-----SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE-TFYTHA-- 97 (987)
Q Consensus 29 v~nn~l~~~~~-~g~l~ridl-~~~-~-----~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~-~~Y~~~-- 97 (987)
+.++.+++.-. .+.|+.+++ ... . +..+++.....+..-+..+--||.+..+++.-.. +.. .|-+..
T Consensus 73 ~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~--~P~~l~~~~~~~ 150 (248)
T PF06977_consen 73 LGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER--KPKRLYEVNGFP 150 (248)
T ss_dssp -STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES--SSEEEEEEESTT
T ss_pred ECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC--CChhhEEEcccc
Confidence 45567777663 789999988 222 1 2344544332233458999999999998887662 233 343433
Q ss_pred CCCCce-----ec--cCCCCceEEEEeecCCCCCCCCcceEEEEc-CCCcEEEEEeccCccccceeeeeeeeCCCC----
Q 001978 98 KWSKPR-----VL--SKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDEKDKREKYIKLLFELNELP---- 165 (987)
Q Consensus 98 ~~~k~k-----~L--~klkg~~i~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~---- 165 (987)
...... .+ .++.-.++.+++.++. |+.++|=+ ....|++...+++ ++..+.|....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~------t~~lliLS~es~~l~~~d~~G~------~~~~~~L~~g~~gl~ 218 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPR------TGHLLILSDESRLLLELDRQGR------VVSSLSLDRGFHGLS 218 (248)
T ss_dssp -SS--EEEE-HHHH-HT--SS---EEEEETT------TTEEEEEETTTTEEEEE-TT--------EEEEEE-STTGGG-S
T ss_pred CccceeeccccccccccceeccccceEEcCC------CCeEEEEECCCCeEEEECCCCC------EEEEEEeCCcccCcc
Confidence 111110 01 1223346888898832 45666554 4466767654432 34445565310
Q ss_pred ---CceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 166 ---EAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 166 ---~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
..-.||.+.. .+-+.+++-|.++|.|.
T Consensus 219 ~~~~QpEGIa~d~------~G~LYIvsEpNlfy~f~ 248 (248)
T PF06977_consen 219 KDIPQPEGIAFDP------DGNLYIVSEPNLFYRFE 248 (248)
T ss_dssp S---SEEEEEE-T------T--EEEEETTTEEEEEE
T ss_pred cccCCccEEEECC------CCCEEEEcCCceEEEeC
Confidence 1257888862 24666778999999883
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=72.82 E-value=1.7e+02 Score=32.97 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=71.9
Q ss_pred CCCceeEEEEeCCEEEEEec---CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE--
Q 001978 20 GRGVITCMSAGNDVIVLGTS---KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY-- 94 (987)
Q Consensus 20 ~~~~i~~~~v~nn~l~~~~~---~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y-- 94 (987)
|...||+|+-+++=.-+.++ +..|..||. +.-..++|+..+ .+-+..+--.|+|+.++.++- |+----
T Consensus 194 gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdp--dtg~~~pL~~~g--lgg~slLkwSPdgd~lfaAt~---davfrlw~ 266 (445)
T KOG2139|consen 194 GHNPVTSMQWNEDGTILVTASFGSSSIMIWDP--DTGQKIPLIPKG--LGGFSLLKWSPDGDVLFAATC---DAVFRLWQ 266 (445)
T ss_pred CCceeeEEEEcCCCCEEeecccCcceEEEEcC--CCCCcccccccC--CCceeeEEEcCCCCEEEEecc---cceeeeeh
Confidence 44569999999996666654 356777777 444456665333 346778888999999888876 333222
Q ss_pred EecCCCCcee-ccCCCCceEEEEeecCCCCCCCCcceEEEEcCC--CcEEEEEeccC
Q 001978 95 THAKWSKPRV-LSKLKGLVVNAVAWNRQQITEASTKEIILGTDT--GQLHEMAVDEK 148 (987)
Q Consensus 95 ~~~~~~k~k~-L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~--G~i~e~~i~~~ 148 (987)
.+..+++-|- +. .| .|...+|++. |++|+=+-. -.||.......
T Consensus 267 e~q~wt~erw~lg--sg-rvqtacWspc-------GsfLLf~~sgsp~lysl~f~~~ 313 (445)
T KOG2139|consen 267 ENQSWTKERWILG--SG-RVQTACWSPC-------GSFLLFACSGSPRLYSLTFDGE 313 (445)
T ss_pred hcccceecceecc--CC-ceeeeeecCC-------CCEEEEEEcCCceEEEEeecCC
Confidence 3556665444 43 56 8999999932 345554433 45777666544
No 233
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=72.80 E-value=6.2 Score=43.29 Aligned_cols=152 Identities=14% Similarity=0.062 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHh-HChHHHHHHHHc---CCCCCCCc-chhhhhhcC
Q 001978 535 EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIM-LDAYETVESWMT---TNNLNPRK-LIPAMMRYS 605 (987)
Q Consensus 535 ~dy~~ll~~yi~~~~~~~AL~~l~~~----~~~~~li~k~~~~Ll~-~~p~~ti~~l~~---~~~ld~~~-lip~L~~~~ 605 (987)
+++..++.+ ...+++++|++++.+. ++ ...+..++..... .+.+++.+++-+ ....+.+. +.-.+-.+.
T Consensus 79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 79 QDYERLIQL-LQDGDPEEALKLAEKAYERDGD-PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIY 156 (280)
T ss_dssp -----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHH
T ss_pred ccccccccc-cccccccccccccccccccccc-cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 455566666 6778888888877542 12 2333333333222 233333333322 11111111 111111110
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcC
Q 001978 606 SEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEK 685 (987)
Q Consensus 606 ~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~ 685 (987)
.. ......++.+++..+...+. ++.+.+.++.++++.++..++...|+..... . -....
T Consensus 157 ~~---~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-------~----------~~~~~ 215 (280)
T PF13429_consen 157 EQ---LGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKA-------A----------PDDPD 215 (280)
T ss_dssp HH---CCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------------------HTSCC
T ss_pred HH---cCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-------C----------cCHHH
Confidence 00 02356788999988877654 6788899998898866555544444433100 0 01112
Q ss_pred cceeeehhhhccccHHHHHHHHHh
Q 001978 686 RMRACVHIYGMMSMHEEAVALALQ 709 (987)
Q Consensus 686 ~~~~~v~L~~~~g~~~eAl~l~l~ 709 (987)
+....+..|..+|++++|+..+-.
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccccccc
Confidence 334456778899999999998764
No 234
>PRK11189 lipoprotein NlpI; Provisional
Probab=72.67 E-value=1.2e+02 Score=33.70 Aligned_cols=48 Identities=13% Similarity=0.051 Sum_probs=35.1
Q ss_pred HHchhhHHHHHHhcCC----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
|...|++++|+...+. ......++...|..+...|+|++|...|.+..
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al 125 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL 125 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556777887765432 11234677888999999999999999988875
No 235
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=72.32 E-value=8.2 Score=45.41 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=73.2
Q ss_pred HHHHhhcCCCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC
Q 001978 13 LERYAAKGRGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG 89 (987)
Q Consensus 13 ~~~~~~~~~~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~ 89 (987)
.|-.|.+..+.+.++..+.- .|+++|.. .|-.+|| ...-|.+. ++ +.--|..+.++|.|.++|+.+. +
T Consensus 558 sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL-~t----g~kwiS~msihp~GDnli~gs~---d 628 (733)
T KOG0650|consen 558 SQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKL-LT----GSKWISSMSIHPNGDNLILGSY---D 628 (733)
T ss_pred ccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHH-hc----CCeeeeeeeecCCCCeEEEecC---C
Confidence 34556677778888888775 55666666 6666788 43333322 22 1246788999999999999988 6
Q ss_pred ccEEEEec-CCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEE
Q 001978 90 AETFYTHA-KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHE 142 (987)
Q Consensus 90 g~~~Y~~~-~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e 142 (987)
+....... -++|+..--++.-..+++||+.+.. + =|-.|..+|.++.
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-P-----Lfas~sdDgtv~V 676 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-P-----LFASGSDDGTVIV 676 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-c-----eeeeecCCCcEEE
Confidence 76655443 3334444334555689999999543 1 2444566666543
No 236
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=72.13 E-value=32 Score=37.54 Aligned_cols=136 Identities=8% Similarity=0.120 Sum_probs=77.0
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe-
Q 001978 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH- 96 (987)
Q Consensus 21 ~~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~- 96 (987)
-|.|+++..+.. +|.=|..+++|-.+|. .|.--.-+..- +....|..|...|+|.+++|.|+.. .--.|=++
T Consensus 172 ~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~---qd~~~vrsiSfHPsGefllvgTdHp-~~rlYdv~T 247 (430)
T KOG0640|consen 172 VDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF---QDTEPVRSISFHPSGEFLLVGTDHP-TLRLYDVNT 247 (430)
T ss_pred cCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh---hccceeeeEeecCCCceEEEecCCC-ceeEEeccc
Confidence 356788888876 6677778899999999 55432111111 1246899999999999999999832 11112111
Q ss_pred ---cCCCCceeccCCCCceEEEEeecCCCCCCCCcc-eEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEE
Q 001978 97 ---AKWSKPRVLSKLKGLVVNAVAWNRQQITEASTK-EIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQ 172 (987)
Q Consensus 97 ---~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~-~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~ 172 (987)
.-+..+..-. + -.|++|-.+ +|+ -.+.|+++|.|=.. ++- .-+.++.+-+-.++ +.|++..
T Consensus 248 ~QcfvsanPd~qh--t-~ai~~V~Ys-------~t~~lYvTaSkDG~Iklw--DGV--S~rCv~t~~~AH~g-sevcSa~ 312 (430)
T KOG0640|consen 248 YQCFVSANPDDQH--T-GAITQVRYS-------STGSLYVTASKDGAIKLW--DGV--SNRCVRTIGNAHGG-SEVCSAV 312 (430)
T ss_pred eeEeeecCccccc--c-cceeEEEec-------CCccEEEEeccCCcEEee--ccc--cHHHHHHHHhhcCC-ceeeeEE
Confidence 1011111111 2 268888887 233 45667888976442 211 11222222223332 4588888
Q ss_pred EEe
Q 001978 173 MET 175 (987)
Q Consensus 173 ~~~ 175 (987)
|.+
T Consensus 313 Ftk 315 (430)
T KOG0640|consen 313 FTK 315 (430)
T ss_pred Ecc
Confidence 863
No 237
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.89 E-value=2.7 Score=43.00 Aligned_cols=34 Identities=24% Similarity=0.557 Sum_probs=29.7
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
...|..|+.+|-. + ..+..-|-|.||.+||....
T Consensus 50 ~pNC~LC~t~La~-----g------------dt~RLvCyhlfHW~Clnera 83 (299)
T KOG3970|consen 50 NPNCRLCNTPLAS-----G------------DTTRLVCYHLFHWKCLNERA 83 (299)
T ss_pred CCCCceeCCcccc-----C------------cceeehhhhhHHHHHhhHHH
Confidence 4589999999988 5 78889999999999998764
No 238
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=71.65 E-value=2e+02 Score=36.38 Aligned_cols=103 Identities=16% Similarity=0.095 Sum_probs=63.8
Q ss_pred CCEEEEEecCCeEEEEeC--CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCcee-ccC
Q 001978 31 NDVIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRV-LSK 107 (987)
Q Consensus 31 nn~l~~~~~~g~l~ridl--~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~-L~k 107 (987)
+..-++|+.++.|+|||. .++.+..-+...... ......+-.+..| |+.|.+. .|+.=..+.-..++|. |+-
T Consensus 542 ~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~-~~~Fs~~aTt~~G-~iavgs~---~G~IRLyd~~g~~AKT~lp~ 616 (794)
T PF08553_consen 542 NEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS-KNNFSCFATTEDG-YIAVGSN---KGDIRLYDRLGKRAKTALPG 616 (794)
T ss_pred CCceEEEECCCceEEeccCCCCCceeecccccccc-CCCceEEEecCCc-eEEEEeC---CCcEEeecccchhhhhcCCC
Confidence 446699999999999999 343332222222111 2456667777778 5666666 6887544433334444 444
Q ss_pred CCCceEEEEeecCCCCCCCCcceEEEEcCCCcE--EEEEec
Q 001978 108 LKGLVVNAVAWNRQQITEASTKEIILGTDTGQL--HEMAVD 146 (987)
Q Consensus 108 lkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i--~e~~i~ 146 (987)
| |-+|+.|.-.. -|.-||||-+--| +.+.+.
T Consensus 617 l-G~pI~~iDvt~-------DGkwilaTc~tyLlLi~t~~~ 649 (794)
T PF08553_consen 617 L-GDPIIGIDVTA-------DGKWILATCKTYLLLIDTLIK 649 (794)
T ss_pred C-CCCeeEEEecC-------CCcEEEEeecceEEEEEEeee
Confidence 3 67999988872 3688999877444 444443
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=71.17 E-value=1.5e+02 Score=34.53 Aligned_cols=145 Identities=12% Similarity=0.188 Sum_probs=79.0
Q ss_pred EeCCEEEEEecCC------eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCc
Q 001978 29 AGNDVIVLGTSKG------WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKP 102 (987)
Q Consensus 29 v~nn~l~~~~~~g------~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~ 102 (987)
...++.|+....+ .|+.+|.+..+...+--. ...+...-.+|.|.+++.++...+....|.++....+.
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~-----~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~ 235 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQS-----REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR 235 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecC-----CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE
Confidence 4445666654332 366667743333322111 34667777889999988766522223455566666667
Q ss_pred eeccCCCCceEEEEeecCCCCCCCCcceEEEEc-CCC--cEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccC
Q 001978 103 RVLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTG--QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLS 179 (987)
Q Consensus 103 k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt-~~G--~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~ 179 (987)
+.+...+|. +.+.+|+++ ...+++.. .+| .||...+..+ ..+++..- ++..++..|.
T Consensus 236 ~~l~~~~g~-~~~~~~SpD------G~~la~~~~~~g~~~Iy~~d~~~~-----~~~~lt~~---~~~~~~~~~s----- 295 (430)
T PRK00178 236 EQITNFEGL-NGAPAWSPD------GSKLAFVLSKDGNPEIYVMDLASR-----QLSRVTNH---PAIDTEPFWG----- 295 (430)
T ss_pred EEccCCCCC-cCCeEECCC------CCEEEEEEccCCCceEEEEECCCC-----CeEEcccC---CCCcCCeEEC-----
Confidence 778777763 557899843 22566543 344 5777766543 13333221 1234445553
Q ss_pred CCceEEEEEEC---CCeEEEEe
Q 001978 180 NGTRYYVMAVT---PTRLYSFT 198 (987)
Q Consensus 180 ~~~~~~i~ast---~~rly~f~ 198 (987)
.+.+.+++.+. ...+|.+.
T Consensus 296 pDg~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 296 KDGRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred CCCCEEEEEECCCCCceEEEEE
Confidence 22356666554 23577553
No 240
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.82 E-value=2.3 Score=51.49 Aligned_cols=38 Identities=32% Similarity=0.659 Sum_probs=28.9
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
....|.+|...|....- ..--+-||||.||..||.+-.
T Consensus 290 ~~~~C~IC~e~l~~~~~--------------~~~~rL~C~Hifh~~CL~~W~ 327 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHN--------------ITPKRLPCGHIFHDSCLRSWF 327 (543)
T ss_pred cCCeeeeechhhccccc--------------cccceeecccchHHHHHHHHH
Confidence 36799999999887210 124467999999999999864
No 241
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=70.64 E-value=2.7e+02 Score=35.62 Aligned_cols=160 Identities=11% Similarity=0.105 Sum_probs=87.3
Q ss_pred CceeEEEEe----CCEEEEEecCCeEEEEeC-CCCCcee--eE-cCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 22 GVITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDSYD--ID-LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 22 ~~i~~~~v~----nn~l~~~~~~g~l~ridl-~~~~~~~--~~-l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
..+.++.+. +..+++.+.+|.+-|+++ .-....+ +. +.. .. ++.+..++.-.+..++++-|+ +|..|
T Consensus 589 ~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aikl-ke-~D~lv~v~~~~~~d~lll~Ts---~Gr~~ 663 (800)
T TIGR01063 589 RITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKL-DD-GDELISVRLTSGDDEVMLGSK---NGKAV 663 (800)
T ss_pred eEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccC-CC-CCEEEEEEEeCCCCEEEEEEC---CCcEE
Confidence 345555543 247999999999999988 2111111 10 111 11 356666666556677888888 78888
Q ss_pred EEecCCC-------CceeccCCC-CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC---ccccceeeeeeeeC
Q 001978 94 YTHAKWS-------KPRVLSKLK-GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK---DKREKYIKLLFELN 162 (987)
Q Consensus 94 Y~~~~~~-------k~k~L~klk-g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~---~~~e~~~k~v~~l~ 162 (987)
.+....- +...+.+++ |-.|.++..-++ ...+++.|++|.+..+.+..- .+.-+.++. +.+.
T Consensus 664 r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~------~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~-ikl~ 736 (800)
T TIGR01063 664 RFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSE------ESYLLIVTENGYGKRTSIEEYRETSRGGKGVKS-IKIT 736 (800)
T ss_pred EEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEecc------ccEEEEEecCCcEEEEEHHHccccCCCCcceEE-EEcc
Confidence 7764211 122222332 334444444311 236999999999998876522 111122222 3554
Q ss_pred CCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 163 ELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 163 ~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
+.++.+.++.... + ...++++|+..++..|.
T Consensus 737 ~~~d~lv~~~~v~----~-~~~v~liT~~G~~lrf~ 767 (800)
T TIGR01063 737 DRNGQVVGAIAVD----D-DDELMLITSAGKLIRTS 767 (800)
T ss_pred CCCCeEEEEEEec----C-CCeEEEEecCCeEEEee
Confidence 3223344444321 2 23577778888888774
No 242
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.42 E-value=2.5e+02 Score=33.88 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=39.8
Q ss_pred HHHchhhHHHHHHhcCCc-------------------hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP-------------------LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~-------------------~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
++++.|+|.+|+++.++. .+.+.|..+.|.-|-..|+-.+|-++|....
T Consensus 184 ~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 184 ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 377889999998874321 2467889999999999999999999998876
No 243
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=70.28 E-value=57 Score=37.07 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=89.4
Q ss_pred ceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 23 VITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 23 ~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
.+.++|+.. +.|++.+....+..++. ...+..-+. ...+|+.+-+...|+.+++... +.+.+-++..-
T Consensus 356 ~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis------e~~~its~~iS~d~k~~LvnL~---~qei~LWDl~e 426 (519)
T KOG0293|consen 356 KVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS------EEQPITSFSISKDGKLALVNLQ---DQEIHLWDLEE 426 (519)
T ss_pred eeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc------ccCceeEEEEcCCCcEEEEEcc---cCeeEEeecch
Confidence 367787654 36666667767777777 222222122 2478999999999999999988 78888888764
Q ss_pred CCceeccCCCCc-----eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 100 SKPRVLSKLKGL-----VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 100 ~k~k~L~klkg~-----~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
+ +...|.+|+ .|+| ||.-- +..-|.=|+.++.||.-.-..+ |.+-.|++-...|-.+.|.
T Consensus 427 ~--~lv~kY~Ghkq~~fiIrS-CFgg~-----~~~fiaSGSED~kvyIWhr~sg-------kll~~LsGHs~~vNcVswN 491 (519)
T KOG0293|consen 427 N--KLVRKYFGHKQGHFIIRS-CFGGG-----NDKFIASGSEDSKVYIWHRISG-------KLLAVLSGHSKTVNCVSWN 491 (519)
T ss_pred h--hHHHHhhcccccceEEEe-ccCCC-----CcceEEecCCCceEEEEEccCC-------ceeEeecCCcceeeEEecC
Confidence 3 444555553 4444 56411 1224666889999998654433 4555676533446666665
Q ss_pred eeccCCCceEEEEEECCCeEEEE
Q 001978 175 TASLSNGTRYYVMAVTPTRLYSF 197 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f 197 (987)
.. +...++-|+.+..+--|
T Consensus 492 P~----~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 492 PA----DPEMFASASDDGTIRIW 510 (519)
T ss_pred CC----CHHHhhccCCCCeEEEe
Confidence 31 22344444445545444
No 244
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=69.40 E-value=38 Score=43.88 Aligned_cols=189 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHHhHChHHHHHHHHcCCCCCCCcchhhhhhcCCCCCCCCChHHHH
Q 001978 539 IVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVI 618 (987)
Q Consensus 539 ~ll~~yi~~~~~~~AL~~l~~~~~~~~li~k~~~~Ll~~~p~~ti~~l~~~~~ld~~~lip~L~~~~~~~~~~~~~~~~~ 618 (987)
..+.-++..++|.+|+.+++++.-...+++.|.+..+..+-+..|+-+-+ .++.-
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~-------------------------~~~ln 753 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKD-------------------------VDYLN 753 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCC-------------------------HHHHH
Q ss_pred HHHHHHHhhc------CCCC---------------------hhHHHHHHHHhh-cCCChHHHHHHHHHhhCCCCCCCCcc
Q 001978 619 KYLEFCVHRL------HNED---------------------PGVHNLLLSLYA-KQEDDSALLRFLQCKFGKGRENGPEF 670 (987)
Q Consensus 619 ~YLe~li~~~------~~~~---------------------~~ihn~ll~Ly~-~~~~~~kLl~fL~~~~~~~~~~~~~~ 670 (987)
.||..|-+++ +... ..+.+.+..-+. ..+...-++..|... -...
T Consensus 754 LFls~L~~EDvt~tmY~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~-------vkk~ 826 (928)
T PF04762_consen 754 LFLSSLRNEDVTKTMYKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKPKDKDKYLQPILTAY-------VKKS 826 (928)
T ss_pred HHHHhcccccccccccccccccccccccccccCCCccccHHHHHHHHHHHHhcccccchhhHHHHHHHH-------HhcC
Q ss_pred cCChHHHHHHHHhcC-----cceeeehhhhccccHHHHHHHHHh-cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhccc
Q 001978 671 FYDPKYALRLCLKEK-----RMRACVHIYGMMSMHEEAVALALQ-VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQE 744 (987)
Q Consensus 671 ~yd~~~aLrlc~~~~-----~~~~~v~L~~~~g~~~eAl~l~l~-~di~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~~~ 744 (987)
+-+++.||++..+.+ ..++++.=+.-+=+..+-.+.||- -|+++|.-+|++.+.|+. =++-.++.+-..+
T Consensus 827 Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPK----EYLPfL~~L~~l~ 902 (928)
T PF04762_consen 827 PPDLEEALQLIKELREEDPESAEEALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPK----EYLPFLQELQKLP 902 (928)
T ss_pred chhHHHHHHHHHHHHhcChHHHHHHHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccChH----HHHHHHHHHHhCC
Q ss_pred cCCChhhHH-------HHHHHHHhcC
Q 001978 745 KGTKRENIR-------KAIAFLKETD 763 (987)
Q Consensus 745 ~~~~~~~i~-------~~l~~L~~~~ 763 (987)
....+-.|+ +|+..|.+++
T Consensus 903 ~~~rry~ID~hLkRy~kAL~~L~~~G 928 (928)
T PF04762_consen 903 PLYRRYKIDDHLKRYEKALRHLSACG 928 (928)
T ss_pred hhheeeeHhhhhCCHHHHHHHHHhhC
No 245
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=68.33 E-value=7.6 Score=32.21 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=35.5
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcC-CHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATK-DFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g-~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+...+.. ..-..++...|.-++..| +|.+|.+.|-+..
T Consensus 12 ~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 12 IYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 467788888888886532 123457778888888888 6888888877654
No 246
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.87 E-value=13 Score=43.40 Aligned_cols=97 Identities=19% Similarity=0.229 Sum_probs=62.3
Q ss_pred HhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhc-------------CcceeeehhhhccccHHHHHHHHH
Q 001978 642 LYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKE-------------KRMRACVHIYGMMSMHEEAVALAL 708 (987)
Q Consensus 642 Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~-------------~~~~~~v~L~~~~g~~~eAl~l~l 708 (987)
.+.+++-+...++||..--+ . ++.-.+.|.+.+-|+|.-- .+.+..--||-+||++.+||..++
T Consensus 189 fflkHNaE~dAiDlL~Evg~--I-ekv~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~av~~ai 265 (881)
T COG5110 189 FFLKHNAEFDAIDLLVEVGG--I-EKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTRAVVGAI 265 (881)
T ss_pred HHHhcccchHHHHHHHHhcc--h-hhhhhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34444444555666655411 1 1111345555566666321 223345568999999999999999
Q ss_pred h-cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhc
Q 001978 709 Q-VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIE 742 (987)
Q Consensus 709 ~-~di~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~ 742 (987)
. ++.++++++|+.. .|+..+|++--.+++.-+.
T Consensus 266 Rl~~~~~i~e~~~a~-~Dp~~kKQ~~YiLArq~~~ 299 (881)
T COG5110 266 RLQKSKEIIEYVRAI-EDPDYKKQCLYILARQNLY 299 (881)
T ss_pred hcccHHHHHHHHHhc-cChHHHHHHHHHHHhccCC
Confidence 9 8899999999544 4788888887777765543
No 247
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=67.43 E-value=26 Score=34.24 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=40.1
Q ss_pred HHHchhhHHHHHHhcCC----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+..+|+|++|+..++. ...-...+...|.-+...|+|++|...|.+..
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 48889999999998763 22345677888999999999999999999886
No 248
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=67.38 E-value=5.5 Score=34.07 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=38.7
Q ss_pred HHHHchhhHHHHHHhcCC---------ch--hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRD---------PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~---------~~--~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..|...|+|++|+.+.+. +. .....+...|.-+...|+|++|.++|.++.
T Consensus 13 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 13 RVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 357888999999888652 11 235667889999999999999999998876
No 249
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=67.34 E-value=2.2e+02 Score=32.10 Aligned_cols=112 Identities=17% Similarity=0.229 Sum_probs=81.1
Q ss_pred CCceeEEEEeCCEEEEEec--CCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGNDVIVLGTS--KGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~nn~l~~~~~--~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.|.|+|..-+-+=-++||. +|.|..+.- .......+.-+ -.-|.=++-+|.|..++.-++ +|.++.+..
T Consensus 106 KDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e-----~~dieWl~WHp~a~illAG~~---DGsvWmw~i 177 (399)
T KOG0296|consen 106 KDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE-----VEDIEWLKWHPRAHILLAGST---DGSVWMWQI 177 (399)
T ss_pred CCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecc-----cCceEEEEecccccEEEeecC---CCcEEEEEC
Confidence 3678998888776666664 599999988 44433333312 245677777999999999888 999999887
Q ss_pred CCC-CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 98 KWS-KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 98 ~~~-k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
.+. ..+.++- .+.+++|=.+.++ .+.++.|-.+|.|.--....
T Consensus 178 p~~~~~kv~~G-h~~~ct~G~f~pd------GKr~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 178 PSQALCKVMSG-HNSPCTCGEFIPD------GKRILTGYDDGTIIVWNPKT 221 (399)
T ss_pred CCcceeeEecC-CCCCcccccccCC------CceEEEEecCceEEEEecCC
Confidence 663 4555553 6678888888854 35899999999887765543
No 250
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=67.32 E-value=31 Score=37.85 Aligned_cols=101 Identities=10% Similarity=0.113 Sum_probs=63.8
Q ss_pred ceeEEEEeCC--EEEEEecCCeEEEEeC--C------CCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 23 VITCMSAGND--VIVLGTSKGWLIRHDF--G------AGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 23 ~i~~~~v~nn--~l~~~~~~g~l~ridl--~------~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
+++++|.+|+ .++-+..+|+.-.||. . |--..+.+.|.-..+..++ ++-|.|.|.-+.++.. +.-.
T Consensus 280 aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~g---s~l~ 355 (420)
T KOG2096|consen 280 AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSFG---SDLK 355 (420)
T ss_pred heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeecC---CceE
Confidence 4788888887 5677778899888876 1 1112233333333333444 9999999998888765 3333
Q ss_pred EEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEE
Q 001978 93 FYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILG 134 (987)
Q Consensus 93 ~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiG 134 (987)
.|-.+.-.+--.+.+..+-.|+|++|. ++|.+++-
T Consensus 356 ~~~se~g~~~~~~e~~h~~~Is~is~~-------~~g~~~at 390 (420)
T KOG2096|consen 356 VFASEDGKDYPELEDIHSTTISSISYS-------SDGKYIAT 390 (420)
T ss_pred EEEcccCccchhHHHhhcCceeeEEec-------CCCcEEee
Confidence 444444333334566667799999998 34566654
No 251
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=67.06 E-value=70 Score=37.61 Aligned_cols=115 Identities=16% Similarity=0.170 Sum_probs=72.9
Q ss_pred CceeEEE---EeCCEEEEEecCCeEEEEeC-CCCCce--eeEcCCCC---------------------CCccceeEEEeC
Q 001978 22 GVITCMS---AGNDVIVLGTSKGWLIRHDF-GAGDSY--DIDLSAGR---------------------PGEQSIHKVFVD 74 (987)
Q Consensus 22 ~~i~~~~---v~nn~l~~~~~~g~l~ridl-~~~~~~--~~~l~~~~---------------------~~~~~i~~i~lD 74 (987)
..+||+. -..+....+-.+|.+|.+|. .+.... .+..++.. -+.+.|+.++..
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 3466654 35556677778999999987 333221 11111110 024689999999
Q ss_pred CCCCeEEEEeecCCCccEEEEecCCCCceeccC-CCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEec
Q 001978 75 PGGSHCIATIVGSGGAETFYTHAKWSKPRVLSK-LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (987)
Q Consensus 75 p~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~k-lkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (987)
|.|.||...+. +|-.-.+|....+..-+.| ..| -..||+|.++ .+-|++|.+|-.|=...+.
T Consensus 300 ~DG~~LA~VSq---DGfLRvF~fdt~eLlg~mkSYFG-GLLCvcWSPD------GKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 300 PDGKYLATVSQ---DGFLRIFDFDTQELLGVMKSYFG-GLLCVCWSPD------GKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred CCCceEEEEec---CceEEEeeccHHHHHHHHHhhcc-ceEEEEEcCC------ccEEEecCCcceEEEEEec
Confidence 99999999998 8877666665443322221 223 5789999954 3579999988655444443
No 252
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=66.91 E-value=81 Score=40.00 Aligned_cols=65 Identities=9% Similarity=-0.081 Sum_probs=45.5
Q ss_pred eeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 24 ITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 24 i~~~~v~--nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
|..++-+ ..+++-+--.++|+.+|. .-..+..+.-+ .+.|-++-.||.|+++...++ |...-++.
T Consensus 132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H-----~s~VKGvs~DP~Gky~ASqsd---Drtikvwr 199 (942)
T KOG0973|consen 132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH-----QSLVKGVSWDPIGKYFASQSD---DRTLKVWR 199 (942)
T ss_pred cceeccCCCccEEEEecccceEEEEccccceeeeeeecc-----cccccceEECCccCeeeeecC---CceEEEEE
Confidence 5556666 345566667789999999 44555555555 357888999999999888877 66655543
No 253
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=66.62 E-value=1.1e+02 Score=31.07 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=39.2
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..+...|+|++|+++.+.. ..-..+...+|..++..|+|++|.+.|.+..
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 73 LYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3577889999999886531 1223567788999999999999999998875
No 254
>PRK05560 DNA gyrase subunit A; Validated
Probab=66.60 E-value=3.1e+02 Score=35.13 Aligned_cols=158 Identities=13% Similarity=0.146 Sum_probs=87.1
Q ss_pred CceeEEEEe----CCEEEEEecCCeEEEEeC-CCC--C---ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc
Q 001978 22 GVITCMSAG----NDVIVLGTSKGWLIRHDF-GAG--D---SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE 91 (987)
Q Consensus 22 ~~i~~~~v~----nn~l~~~~~~g~l~ridl-~~~--~---~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~ 91 (987)
..+.++.+. +..+++.+.+|.+-|+++ .-. . ..-+.+. .++.+..++.-.+..++++-|+ .|.
T Consensus 591 ~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLk----e~D~lv~v~~~~~~d~lll~T~---~Gr 663 (805)
T PRK05560 591 KITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLD----EGDELIGVRLTDGDDDILLATK---NGK 663 (805)
T ss_pred eEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccC----CCCEEEEEEEeCCCCEEEEEEC---CCc
Confidence 345555554 358999999999999987 211 1 1112222 1356666666566677888888 798
Q ss_pred EEEEecCCC-------CceeccCCC-C-ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC---ccccceeeeee
Q 001978 92 TFYTHAKWS-------KPRVLSKLK-G-LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK---DKREKYIKLLF 159 (987)
Q Consensus 92 ~~Y~~~~~~-------k~k~L~klk-g-~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~---~~~e~~~k~v~ 159 (987)
.|.+....- +...+.+|+ | ..+..+.++ + ....+++.|++|.+..+.++.- .+.-+-+. .+
T Consensus 664 ~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~-~-----~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~-~l 736 (805)
T PRK05560 664 AIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVR-E-----DSQEILTVTENGYGKRTPVSEYRLQGRGGKGVI-TI 736 (805)
T ss_pred EEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEc-C-----CCcEEEEEEeCCeEEEEEHHHhhccCCCCCcEE-ee
Confidence 887764211 122223333 2 234444444 1 1125999999999888876422 11111222 23
Q ss_pred eeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 160 ELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 160 ~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.+.+.++.+.++.... ++ ..++++|...++..|.
T Consensus 737 kl~~~~d~lv~v~~v~----~~-~~v~i~T~~G~~lrf~ 770 (805)
T PRK05560 737 KITEKNGKLVGALPVD----DD-DEIMLITDSGKLIRTR 770 (805)
T ss_pred eccCCCCeEEEEEEec----CC-CeEEEEecCCeEEEEE
Confidence 4543223455544321 22 3466767788887774
No 255
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.32 E-value=77 Score=37.35 Aligned_cols=56 Identities=18% Similarity=0.270 Sum_probs=35.4
Q ss_pred CcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEE
Q 001978 127 STKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLY 195 (987)
Q Consensus 127 st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly 195 (987)
..|.|++|+.+|.|=.+. +..+..|+. +|+-..||++|-+.. + +-.|++||.+-|.
T Consensus 440 ~sG~IvvgS~~GdIRLYd-----ri~~~AKTA--lPgLG~~I~hVdvta---d---GKwil~Tc~tyLl 495 (644)
T KOG2395|consen 440 ESGYIVVGSLKGDIRLYD-----RIGRRAKTA--LPGLGDAIKHVDVTA---D---GKWILATCKTYLL 495 (644)
T ss_pred CCceEEEeecCCcEEeeh-----hhhhhhhhc--ccccCCceeeEEeec---c---CcEEEEecccEEE
Confidence 468899999988776652 223345553 665446799988763 2 3455667766555
No 256
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=65.88 E-value=2.1e+02 Score=32.94 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=55.6
Q ss_pred eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEeecCC
Q 001978 42 WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQ 121 (987)
Q Consensus 42 ~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~ 121 (987)
.|+..|....+...+.-+ ...+...-.+|.|.+++.++...+....|.++....+.+.+....+ .+.+++|.++
T Consensus 171 ~l~~~d~~g~~~~~l~~~-----~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~-~~~~~~~spD 244 (417)
T TIGR02800 171 ELQVADYDGANPQTITRS-----REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPG-MNGAPAFSPD 244 (417)
T ss_pred eEEEEcCCCCCCEEeecC-----CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC-CccceEECCC
Confidence 588888833333333222 2345566678999998887752223455556665555666666655 4567899843
Q ss_pred CCCCCCcceEEEE-cCCC--cEEEEEecc
Q 001978 122 QITEASTKEIILG-TDTG--QLHEMAVDE 147 (987)
Q Consensus 122 ~~~~~st~~iLiG-t~~G--~i~e~~i~~ 147 (987)
...|++. +.+| .||...+..
T Consensus 245 ------g~~l~~~~~~~~~~~i~~~d~~~ 267 (417)
T TIGR02800 245 ------GSKLAVSLSKDGNPDIYVMDLDG 267 (417)
T ss_pred ------CCEEEEEECCCCCccEEEEECCC
Confidence 2356654 3334 588777654
No 257
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=65.87 E-value=88 Score=34.23 Aligned_cols=143 Identities=11% Similarity=0.132 Sum_probs=87.3
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE-----EEecCC
Q 001978 25 TCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF-----YTHAKW 99 (987)
Q Consensus 25 ~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~-----Y~~~~~ 99 (987)
.++.-....+..|.-+|.|-.||+..+++..+ + ++..++|+.+|+.|.|..++.-+- +...- +.+.+.
T Consensus 180 v~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~-l---sGh~DtIt~lsls~~gs~llsnsM---d~tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 180 VGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT-L---SGHADTITGLSLSRYGSFLLSNSM---DNTVRVWDVRPFAPSQ 252 (338)
T ss_pred EEecccccceeeccccCceeeeccccCcceEE-e---ecccCceeeEEeccCCCccccccc---cceEEEEEecccCCCC
Confidence 44444566888899999999999944444322 2 223579999999999998775322 22221 222222
Q ss_pred CCceeccCCCC------ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEE
Q 001978 100 SKPRVLSKLKG------LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (987)
Q Consensus 100 ~k~k~L~klkg------~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~ 173 (987)
|.+.-+.| ...-.++|.+. . .-|=.|..+-.+|.-... +.+.+|.||+-.+.|-.+.+
T Consensus 253 ---R~v~if~g~~hnfeknlL~cswsp~-~-----~~i~ags~dr~vyvwd~~-------~r~~lyklpGh~gsvn~~~F 316 (338)
T KOG0265|consen 253 ---RCVKIFQGHIHNFEKNLLKCSWSPN-G-----TKITAGSADRFVYVWDTT-------SRRILYKLPGHYGSVNEVDF 316 (338)
T ss_pred ---ceEEEeecchhhhhhhcceeeccCC-C-----CccccccccceEEEeecc-------cccEEEEcCCcceeEEEeee
Confidence 21211222 23346688843 1 146667777777765433 34778999975566777777
Q ss_pred EeeccCCCceEEEEEECCCeEE
Q 001978 174 ETASLSNGTRYYVMAVTPTRLY 195 (987)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly 195 (987)
.. ...++..++...++|
T Consensus 317 hp-----~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 317 HP-----TEPIILSCSSDKTIY 333 (338)
T ss_pred cC-----CCcEEEEeccCceeE
Confidence 53 234777777788888
No 258
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=65.68 E-value=91 Score=35.62 Aligned_cols=56 Identities=9% Similarity=0.071 Sum_probs=40.9
Q ss_pred eeEEEEe----CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEe
Q 001978 24 ITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATI 84 (987)
Q Consensus 24 i~~~~v~----nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~ 84 (987)
+.++.-+ ++.|+-+-.+|++-.|++ +-..+.++.=+ ..+|.++-..|+|++|.-.+
T Consensus 220 v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH-----~~RVs~VafHPsG~~L~Tas 280 (459)
T KOG0272|consen 220 VGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGH-----LARVSRVAFHPSGKFLGTAS 280 (459)
T ss_pred eeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcc-----hhhheeeeecCCCceeeecc
Confidence 5555544 446777778899999999 44445556555 37899999999999887654
No 259
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=65.62 E-value=34 Score=39.55 Aligned_cols=109 Identities=23% Similarity=0.275 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhh
Q 001978 615 HEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIY 694 (987)
Q Consensus 615 ~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~ 694 (987)
..++.+|+.+..+. +.+.-.++.+|...+.+.+.+++|.+.- ...| -| +.-++. .+..|
T Consensus 186 ~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL----~~~p---~d---~~LL~~-------Qa~fL 244 (395)
T PF09295_consen 186 DEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEAL----KENP---QD---SELLNL-------QAEFL 244 (395)
T ss_pred HHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHH----HhCC---CC---HHHHHH-------HHHHH
Confidence 45777888776553 4555567777776665677777777761 0011 11 111221 12233
Q ss_pred hccccHHHHHHHHHhcCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHhc
Q 001978 695 GMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKET 762 (987)
Q Consensus 695 ~~~g~~~eAl~l~l~~di~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~~ 762 (987)
-+.|+++.|+.+|.+ |.+. .| ++. +.|..|++.++.. ++.+.|+-.|+.+
T Consensus 245 l~k~~~~lAL~iAk~-----av~l--sP-~~f----~~W~~La~~Yi~~------~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKK-----AVEL--SP-SEF----ETWYQLAECYIQL------GDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHH-----HHHh--Cc-hhH----HHHHHHHHHHHhc------CCHHHHHHHHhcC
Confidence 444555555444332 1111 12 233 3899999999987 5788888888876
No 260
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=65.62 E-value=1.4e+02 Score=34.43 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=57.1
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce
Q 001978 25 TCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR 103 (987)
Q Consensus 25 ~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k 103 (987)
.+-++.++.++++..+|.++.+|. .++..-+.++... ..+- ..|.++++.+. +|..|-++...-+..
T Consensus 250 ~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-------~~~~--~~~~~vy~~~~---~g~l~ald~~tG~~~ 317 (394)
T PRK11138 250 TTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-------NDFA--VDGGRIYLVDQ---NDRVYALDTRGGVEL 317 (394)
T ss_pred CCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-------cCcE--EECCEEEEEcC---CCeEEEEECCCCcEE
Confidence 455677899999999999999999 6655443333210 1111 13556666666 677766655332110
Q ss_pred e-ccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 104 V-LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 104 ~-L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
= -..+.+....+.+. ..+.+++|+.+|.|+......
T Consensus 318 W~~~~~~~~~~~sp~v--------~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 318 WSQSDLLHRLLTAPVL--------YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred EcccccCCCcccCCEE--------ECCEEEEEeCCCEEEEEECCC
Confidence 0 00111111111111 135788999999888765543
No 261
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=65.43 E-value=71 Score=38.91 Aligned_cols=154 Identities=14% Similarity=0.109 Sum_probs=85.3
Q ss_pred CceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 22 GVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 22 ~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
+-|+++++..+ .|+-+.+++.+-.++| ...-+..... ....+|..+=+||+| +++.+.. .+|.+--++..
T Consensus 63 d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa----~He~Pvi~ma~~~~g-~LlAtgg--aD~~v~VWdi~ 135 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKA----IHEAPVITMAFDPTG-TLLATGG--ADGRVKVWDIK 135 (775)
T ss_pred hhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhh----ccCCCeEEEEEcCCC-ceEEecc--ccceEEEEEee
Confidence 45788887765 4444445544444566 3322332222 114788999999999 5554432 25666555544
Q ss_pred CCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 99 WSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 99 ~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
.... +.+.- .|-.|.++.|++.. ...-+.-|..+|.++-..+... +.+-.+..... +.|+|+.+..
T Consensus 136 ~~~~th~fkG-~gGvVssl~F~~~~----~~~lL~sg~~D~~v~vwnl~~~----~tcl~~~~~H~--S~vtsL~~~~-- 202 (775)
T KOG0319|consen 136 NGYCTHSFKG-HGGVVSSLLFHPHW----NRWLLASGATDGTVRVWNLNDK----RTCLHTMILHK--SAVTSLAFSE-- 202 (775)
T ss_pred CCEEEEEecC-CCceEEEEEeCCcc----chhheeecCCCceEEEEEcccC----chHHHHHHhhh--hheeeeeecc--
Confidence 3332 22222 23489999999543 2245666888999999888643 11111122232 5699998853
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 001978 178 LSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (987)
+..-++-++-+.-++-|.
T Consensus 203 ---d~~~~ls~~RDkvi~vwd 220 (775)
T KOG0319|consen 203 ---DSLELLSVGRDKVIIVWD 220 (775)
T ss_pred ---CCceEEEeccCcEEEEee
Confidence 223333333355566554
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=65.20 E-value=1.9e+02 Score=31.20 Aligned_cols=145 Identities=13% Similarity=0.267 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCChH----HHHHH--hc--CcChHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 001978 392 QVYLVQAEAAFATKDFHRAASFYAKINYILSFE----EITLK--FI--SVSEQDALRTFLLRKLDNLAKDDKCQITMIST 463 (987)
Q Consensus 392 ~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~~~E----~v~lk--Fl--~~~~~~~L~~YL~~kl~~l~~~~~~q~~lL~~ 463 (987)
..+...|...++.|+|.+|++.|......-+|. ++-+. |. +.++.+.-..++..-+..-+.++.....
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~---- 110 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA---- 110 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH----
Confidence 556777777778888888888877765112222 22222 11 2333433334444333323332222111
Q ss_pred HHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhcccc---CCHHHHHHHHHHcCChhHHHHHHHhHhhHH-H
Q 001978 464 WATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDV---LDEATTMKLLESYGRVEELVFFASLKEQHE-I 539 (987)
Q Consensus 464 Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~---ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~-~ 539 (987)
.|+..+..+..-++...+ ..........|+.|+.++.+. -|...-+..+.. ..--|+ .
T Consensus 111 ----~YlkgLs~~~~i~~~~rD--q~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d------------~LA~~Em~ 172 (254)
T COG4105 111 ----YYLKGLSYFFQIDDVTRD--QSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLND------------ALAGHEMA 172 (254)
T ss_pred ----HHHHHHHHhccCCccccC--HHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH------------HHHHHHHH
Confidence 122222222100000001 122334567889999988753 233332222221 111223 4
Q ss_pred HHHHHHhcccHHHHHHHHh
Q 001978 540 VVHHYIQQGEAKKALQMLR 558 (987)
Q Consensus 540 ll~~yi~~~~~~~AL~~l~ 558 (987)
+..+|..+|.|..|..-..
T Consensus 173 IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 173 IARYYLKRGAYVAAINRFE 191 (254)
T ss_pred HHHHHHHhcChHHHHHHHH
Confidence 6688999999888876443
No 263
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=64.76 E-value=2.8 Score=30.47 Aligned_cols=29 Identities=21% Similarity=0.545 Sum_probs=22.5
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHH
Q 001978 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLI 880 (987)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~ 880 (987)
+|..|+++|.. . ..++..=+..||.+|+.
T Consensus 1 ~C~~C~~~i~~-----~------------~~~~~~~~~~~H~~Cf~ 29 (39)
T smart00132 1 KCAGCGKPIRG-----G------------ELVLRALGKVWHPECFK 29 (39)
T ss_pred CccccCCcccC-----C------------cEEEEeCCccccccCCC
Confidence 58999999887 2 35566668899999974
No 264
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=64.69 E-value=2.4e+02 Score=37.07 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhcc
Q 001978 731 KLWLMVAKHVIEQ 743 (987)
Q Consensus 731 kLWl~ll~~~i~~ 743 (987)
.+|..++++++..
T Consensus 248 ~l~~ala~~yi~~ 260 (987)
T PRK09782 248 QSRITYATALAYR 260 (987)
T ss_pred HHHHHHHHHHHHC
Confidence 3777777777765
No 265
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=64.64 E-value=30 Score=31.56 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=39.6
Q ss_pred HHchhhHHHHHHhcCC-----chh--HhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRD-----PLQ--RDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~-----~~~--~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
++++|+|++|.+.+.. |.. ........|..++..|+|++|.+.|.+..
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 8889999999998753 221 24678889999999999999999998765
No 266
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.10 E-value=1.1e+02 Score=34.88 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=25.3
Q ss_pred hhcCCCceeEEEEeCCEEEEEecCCeEEEEeC
Q 001978 17 AAKGRGVITCMSAGNDVIVLGTSKGWLIRHDF 48 (987)
Q Consensus 17 ~~~~~~~i~~~~v~nn~l~~~~~~g~l~ridl 48 (987)
.-.+...+.|+-..+..|..|-.+|++-.|+.
T Consensus 142 ~~~g~~k~vaf~~~gs~latgg~dg~lRv~~~ 173 (398)
T KOG0771|consen 142 VDFGQQKVVAFNGDGSKLATGGTDGTLRVWEW 173 (398)
T ss_pred hhcCcceEEEEcCCCCEeeeccccceEEEEec
Confidence 33455667777778889999999999999995
No 267
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=63.97 E-value=51 Score=36.18 Aligned_cols=89 Identities=11% Similarity=0.112 Sum_probs=58.5
Q ss_pred eeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC-ceeccCCCCceEEEEeecCCCCCCCCcceEEEE-cCCCcEEEEEe
Q 001978 68 IHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAV 145 (987)
Q Consensus 68 i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k-~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i 145 (987)
-..+-+.+.|.|+.+..+ +|.+.-+...... .|.|+- .-++|+|++|.++ |+.|+- +.+-.|-.-.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~---nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~d-------gr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCA---NGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRD-------GRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred cceEEeccCcceeeeecc---CCcEEEEEccccchhhhhhc-cccceeEEEecCC-------CCEeeeecCCceeEEEec
Confidence 356777899999999888 8988766654433 344442 4469999999942 355554 55666666555
Q ss_pred ccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 146 DEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 146 ~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
..+. -+++ +.++ +||.|.+|..
T Consensus 95 ~~gs----~l~r-irf~---spv~~~q~hp 116 (405)
T KOG1273|consen 95 LKGS----PLKR-IRFD---SPVWGAQWHP 116 (405)
T ss_pred cCCC----ceeE-EEcc---Cccceeeecc
Confidence 4431 2333 2455 6899999974
No 268
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=63.72 E-value=2e+02 Score=33.38 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=24.4
Q ss_pred ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 111 LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 111 ~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
-.|.|||+-++ ..|+.|+.+|.|+.-.+..
T Consensus 328 ~sidcv~~In~-------~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 328 GSIDCVAFIND-------EHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred CCeeeEEEecc-------cceeeccCCceEEEeeecc
Confidence 37999999832 3899999999999977654
No 269
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=63.56 E-value=2.4e+02 Score=36.78 Aligned_cols=160 Identities=12% Similarity=0.164 Sum_probs=96.1
Q ss_pred EEEeCCEEEEEecCCeEEEEeC-CC--CCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec------
Q 001978 27 MSAGNDVIVLGTSKGWLIRHDF-GA--GDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA------ 97 (987)
Q Consensus 27 ~~v~nn~l~~~~~~g~l~ridl-~~--~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~------ 97 (987)
+-...+++++.++.|.|-|+++ .- .......+.. ..++.+..++.-.+-.++++-|+ .|.+|.+..
T Consensus 512 lI~~E~v~v~lS~~GyIKr~~~~~~~~q~~g~~~~~~--ke~D~i~~~~~~~T~d~LL~FTn---~Gkvy~ikvy~IPe~ 586 (957)
T PRK13979 512 LIVVEDVVITLSNEGFIKRIPLKSYNRSNSNVEDIEY--REGDFNKFLIQSNTKDTLLIFTD---KGNMYQIKGINIPEF 586 (957)
T ss_pred cCCCcceEEEEecCCEEEEcccccccccccccccccc--CCCCceEEEEEEcCCCEEEEEEC---CCeEEEEEeeeCCCC
Confidence 3456778899999999999987 21 1111001111 12467888888888888888888 899988753
Q ss_pred C-CCCceeccCC------CCc-eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCcee
Q 001978 98 K-WSKPRVLSKL------KGL-VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (987)
Q Consensus 98 ~-~~k~k~L~kl------kg~-~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~ 169 (987)
+ ..+-.++.++ .|- .+..+.++ +. . ....+++.|++|.|--+.+..-...-+ -+..++|.+. ..+.
T Consensus 587 ~~~~~G~~I~nll~~~~~~~EkIv~i~~~~-ef-~--~~~~lv~~Tk~G~VKrt~L~ef~~~r~-~~~aikL~e~-DeLV 660 (957)
T PRK13979 587 KWKEKGERLDEIIKGIDLESEKIIEAYSIE-DF-T--PQKDFIFITDSGGIKKTSLDKFVTNYT-KLMALKLKKG-EKLI 660 (957)
T ss_pred CcCCCCeEHHHhhhccCCCCCeEEEEEEec-cC-C--CCCEEEEEECCCeEEEEehhhcccccc-ceEEEEcCCC-CEEE
Confidence 1 1233333332 232 34444554 22 1 123699999999999988853211112 2566788763 3455
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 170 GLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
++.+.. ...+...++++|...+...|..
T Consensus 661 ~v~~~~--~~~~~~~Iil~Tk~G~airF~~ 688 (957)
T PRK13979 661 KVKLVD--RTREEKFIKIKTKKGLSFTVEE 688 (957)
T ss_pred EEEEcC--CCCCCCEEEEEeCCCcEEEEEH
Confidence 555532 1112346788788888888864
No 270
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=63.21 E-value=4.2e+02 Score=34.00 Aligned_cols=106 Identities=20% Similarity=0.210 Sum_probs=58.8
Q ss_pred cceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEEC--CCeEEEEecCCchHH
Q 001978 128 TKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT--PTRLYSFTGFGSLDT 205 (987)
Q Consensus 128 t~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast--~~rly~f~g~~~l~~ 205 (987)
..-.|+++.+|.++.+.++-..+....-|.+ ++...| ++ +.++..++ +-.+||.. |.-+|.+.|+-.+.
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~-~lGt~P--~~---Lr~f~sk~--~t~vfa~sdrP~viY~~n~kLv~s- 665 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKV-TLGTQP--IS---LRTFSSKS--RTAVFALSDRPTVIYSSNGKLVYS- 665 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEcccccc-ccCCCC--cE---EEEEeeCC--ceEEEEeCCCCEEEEecCCcEEEe-
Confidence 3468889999999999887542222222332 344333 33 33333323 33344433 78888666642111
Q ss_pred HHhhhhcccccccccCCCcCCCcceeeeccCCCceEEEeecCceEEEEeec
Q 001978 206 VFASYLDRAVHFMELPGEILNSELHFFIKQRRAVHFAWLSGAGIYHGGLNF 256 (987)
Q Consensus 206 lf~~~~~~~~~~~elp~~~~~s~l~~~~~~~~~~~faW~t~~gi~~g~i~~ 256 (987)
+....|+-.. .-|....+|..++-.++.++-+|.++.
T Consensus 666 --------pls~kev~~~------c~f~s~a~~d~l~~~~~~~l~i~tid~ 702 (1096)
T KOG1897|consen 666 --------PLSLKEVNHM------CPFNSDAYPDSLASANGGALTIGTIDE 702 (1096)
T ss_pred --------ccchHHhhhh------cccccccCCceEEEecCCceEEEEecc
Confidence 1111111111 112334678999999999999999975
No 271
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=63.21 E-value=50 Score=34.96 Aligned_cols=111 Identities=12% Similarity=0.248 Sum_probs=68.4
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeC-CCCC------ceeeEcCCC--CCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 23 VITCMSAGNDVIVLGTSKGWLIRHDF-GAGD------SYDIDLSAG--RPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~------~~~~~l~~~--~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
.|-.++-..++|.-|-. |.|+-+-. .-.+ .-+..+|.. ...--.|+-+|+||.-.-++...- ||..|
T Consensus 64 piy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG---D~~~y 139 (325)
T KOG0649|consen 64 PIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG---DGVIY 139 (325)
T ss_pred CeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC---CeEEE
Confidence 36666666666655444 88887755 1111 112233322 112247999999998666666543 78888
Q ss_pred EEecCCCCceeccCCCCc--eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEe
Q 001978 94 YTHAKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAV 145 (987)
Q Consensus 94 Y~~~~~~k~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i 145 (987)
-+....-+.+. .+||| -|-||+--+ +.++||-|..||.+-.-..
T Consensus 140 ~~dlE~G~i~r--~~rGHtDYvH~vv~R~------~~~qilsG~EDGtvRvWd~ 185 (325)
T KOG0649|consen 140 QVDLEDGRIQR--EYRGHTDYVHSVVGRN------ANGQILSGAEDGTVRVWDT 185 (325)
T ss_pred EEEecCCEEEE--EEcCCcceeeeeeecc------cCcceeecCCCccEEEEec
Confidence 88776655444 34675 688888741 3458999999997654433
No 272
>PRK00178 tolB translocation protein TolB; Provisional
Probab=62.97 E-value=3e+02 Score=32.09 Aligned_cols=116 Identities=14% Similarity=0.187 Sum_probs=67.5
Q ss_pred CCceeEEEEe--CCEE-EEEecC--CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 001978 21 RGVITCMSAG--NDVI-VLGTSK--GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 21 ~~~i~~~~v~--nn~l-~~~~~~--g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (987)
.+.+.+.+.+ ++.| ++...+ ..|+++|+...+...+ ... .+.+......|.|.+++++++..++.+.|.+
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l--~~~---~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI--TNF---EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc--cCC---CCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence 3456666665 3345 444333 4699999933332222 211 1233456678999999877653333466777
Q ss_pred ecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCC-C--cEEEEEeccC
Q 001978 96 HAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT-G--QLHEMAVDEK 148 (987)
Q Consensus 96 ~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~-G--~i~e~~i~~~ 148 (987)
+....+.+.|....+ ...+..|.++ .+.|+..+.. | .||...+..+
T Consensus 273 d~~~~~~~~lt~~~~-~~~~~~~spD------g~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 273 DLASRQLSRVTNHPA-IDTEPFWGKD------GRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred ECCCCCeEEcccCCC-CcCCeEECCC------CCEEEEEECCCCCceEEEEECCCC
Confidence 777767777775433 4567889843 2357766543 3 5777766543
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=61.98 E-value=1.4e+02 Score=36.52 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=50.5
Q ss_pred hHHHHHHhcCCc--hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCChHHHHHHhcCcChH--HHHHHHHHHHhhccC
Q 001978 376 EYAAALANCRDP--LQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQ--DALRTFLLRKLDNLA 451 (987)
Q Consensus 376 ~fe~Al~~~~~~--~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~~~E~v~lkFl~~~~~--~~L~~YL~~kl~~l~ 451 (987)
++.+|.++|++. .+......+||-+|+++++..+|++.+.+.. ..|. -++...+..+. +--.+||.
T Consensus 893 QW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~--~~~d-aarll~qmae~e~~K~~p~lr------- 962 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAG--RHLD-AARLLSQMAEREQEKYVPYLR------- 962 (1189)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcc--cchh-HHHHHHHHhHHHhhccCCHHH-------
Confidence 444555554432 2345667789999999999999999999986 2221 11111111111 11112222
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhh
Q 001978 452 KDDKCQITMISTWATELYLDKINRL 476 (987)
Q Consensus 452 ~~~~~q~~lL~~Wl~elyl~~l~~l 476 (987)
-.+.-+|...|+|-|...+..+
T Consensus 963 ---~KklYVL~AlLvE~h~~~ik~~ 984 (1189)
T KOG2041|consen 963 ---LKKLYVLGALLVENHRQTIKEL 984 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHh
Confidence 1244577788888888766655
No 274
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=61.54 E-value=1.2e+02 Score=33.04 Aligned_cols=126 Identities=14% Similarity=0.188 Sum_probs=79.5
Q ss_pred hhHHHHHhhcCCCceeEEEEeCCEE-EEEecCCeEEEEeC-CCCC-ceeeEcCCCCC-------C---------------
Q 001978 10 VDVLERYAAKGRGVITCMSAGNDVI-VLGTSKGWLIRHDF-GAGD-SYDIDLSAGRP-------G--------------- 64 (987)
Q Consensus 10 ~~~~~~~~~~~~~~i~~~~v~nn~l-~~~~~~g~l~ridl-~~~~-~~~~~l~~~~~-------~--------------- 64 (987)
+|.|..---.+-++|.|+--..|-+ ++.+..+.|..+++ .... +.++..+.... +
T Consensus 112 lE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~ 191 (370)
T KOG1007|consen 112 LECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS 191 (370)
T ss_pred hhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC
Confidence 4455444333446789999888866 66777889999999 3333 55444433211 0
Q ss_pred ----------------------ccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCC--ceEEEEeecC
Q 001978 65 ----------------------EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKG--LVVNAVAWNR 120 (987)
Q Consensus 65 ----------------------~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg--~~i~sVaw~~ 120 (987)
...|..+-..|+-.|.|++.. ++|.+-.+..+.+|. ++..+.| +=|=+|-+|+
T Consensus 192 d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g--DdgyvriWD~R~tk~-pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 192 DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG--DDGYVRIWDTRKTKF-PVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC--CCccEEEEeccCCCc-cccccCCCceEEEEEEecC
Confidence 245777778899999888753 366666677666653 3333444 6788999995
Q ss_pred CCCCCCCcceEEEEcCCCcEEEE
Q 001978 121 QQITEASTKEIILGTDTGQLHEM 143 (987)
Q Consensus 121 ~~~~~~st~~iLiGt~~G~i~e~ 143 (987)
.. ..=||-|+++..+...
T Consensus 269 ~h-----dqLiLs~~SDs~V~Ls 286 (370)
T KOG1007|consen 269 EH-----DQLILSGGSDSAVNLS 286 (370)
T ss_pred cc-----ceEEEecCCCceeEEE
Confidence 43 2357777777655543
No 275
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=61.09 E-value=4.9 Score=49.41 Aligned_cols=43 Identities=23% Similarity=0.550 Sum_probs=28.1
Q ss_pred cccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 829 VIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 829 ~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
.++.-+.|++|---|...+ | +.|+. -.=-|.|-||..||-+-.
T Consensus 1465 ~fsG~eECaICYsvL~~vd---r---~lPsk------rC~TCknKFH~~CLyKWf 1507 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVD---R---SLPSK------RCATCKNKFHTRCLYKWF 1507 (1525)
T ss_pred hcCCcchhhHHHHHHHHHh---c---cCCcc------ccchhhhhhhHHHHHHHH
Confidence 4556689999998876422 2 11100 011499999999999876
No 276
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.40 E-value=2.5e+02 Score=30.35 Aligned_cols=111 Identities=14% Similarity=0.177 Sum_probs=66.9
Q ss_pred eEEEEeC---CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 001978 25 TCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (987)
Q Consensus 25 ~~~~v~n---n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (987)
+=+.|-| -.+++|.++|++.-+|. .++-.-+-.+. .+|..--+= -|..+.+-.- +|..|++..++-
T Consensus 14 spLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg------~RiE~sa~v-vgdfVV~GCy---~g~lYfl~~~tG 83 (354)
T KOG4649|consen 14 SPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG------VRIECSAIV-VGDFVVLGCY---SGGLYFLCVKTG 83 (354)
T ss_pred CcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhC------ceeeeeeEE-ECCEEEEEEc---cCcEEEEEecch
Confidence 4466666 57899999999999999 44433332222 222221111 4667777666 688988886543
Q ss_pred ----CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeC
Q 001978 101 ----KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELN 162 (987)
Q Consensus 101 ----k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~ 162 (987)
+...+.. |++=|=. ..++|-|-+|+.+|..|-..... -+-||++.
T Consensus 84 s~~w~f~~~~~-----vk~~a~~-----d~~~glIycgshd~~~yalD~~~-------~~cVyksk 132 (354)
T KOG4649|consen 84 SQIWNFVILET-----VKVRAQC-----DFDGGLIYCGSHDGNFYALDPKT-------YGCVYKSK 132 (354)
T ss_pred hheeeeeehhh-----hccceEE-----cCCCceEEEecCCCcEEEecccc-------cceEEecc
Confidence 2222322 2222221 13578999999999998865432 35677654
No 277
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=60.40 E-value=2.6e+02 Score=30.55 Aligned_cols=188 Identities=15% Similarity=0.126 Sum_probs=92.1
Q ss_pred EEEeCCE-EEEEecCCeEEEEeCCCCCceeeEcCCCCCC----------------------------ccceeEEEeCCCC
Q 001978 27 MSAGNDV-IVLGTSKGWLIRHDFGAGDSYDIDLSAGRPG----------------------------EQSIHKVFVDPGG 77 (987)
Q Consensus 27 ~~v~nn~-l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~----------------------------~~~i~~i~lDp~G 77 (987)
+.+..+- .||.-...-|.|+|-..-++++++||..... ...+.++|--|.|
T Consensus 109 iv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG 188 (353)
T COG4257 109 IVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG 188 (353)
T ss_pred EEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC
Confidence 3444443 3444344489999996666899999976331 1233444544443
Q ss_pred Ce-EEEEeecCCCccEEEEecCCCCceeccCCCCceEEE-----------EeecCCCCCCCCcceEEEEcCC-CcEEEEE
Q 001978 78 SH-CIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNA-----------VAWNRQQITEASTKEIILGTDT-GQLHEMA 144 (987)
Q Consensus 78 ~h-lli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~s-----------Vaw~~~~~~~~st~~iLiGt~~-G~i~e~~ 144 (987)
.- -.||.+ .+|++||....-+-.-.+.-+-|+.=.- =.|.+ +-|.+=+-|.. |.++-+
T Consensus 189 ~gpyGi~at--pdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsd------pig~~wittwg~g~l~rf- 259 (353)
T COG4257 189 GGPYGICAT--PDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSD------PIGRAWITTWGTGSLHRF- 259 (353)
T ss_pred CCCcceEEC--CCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccC------ccCcEEEeccCCceeeEe-
Confidence 22 223333 2788888754433322333222211110 12221 22344443322 444333
Q ss_pred eccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEEC--CCeEEEEecCCchHHHHhhhhcccccccccCC
Q 001978 145 VDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT--PTRLYSFTGFGSLDTVFASYLDRAVHFMELPG 222 (987)
Q Consensus 145 i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast--~~rly~f~g~~~l~~lf~~~~~~~~~~~elp~ 222 (987)
++. .+++.. |.||+....-.++.+++ +-.||.+. ..-|.+|.. ....|.++|.
T Consensus 260 -dPs---~~sW~e-ypLPgs~arpys~rVD~-------~grVW~sea~agai~rfdp-------------eta~ftv~p~ 314 (353)
T COG4257 260 -DPS---VTSWIE-YPLPGSKARPYSMRVDR-------HGRVWLSEADAGAIGRFDP-------------ETARFTVLPI 314 (353)
T ss_pred -Ccc---ccccee-eeCCCCCCCcceeeecc-------CCcEEeeccccCceeecCc-------------ccceEEEecC
Confidence 221 233444 67776322235555543 33455432 344555543 1235778888
Q ss_pred CcCCCcceeeeccCCCceEEEeecCceEE
Q 001978 223 EILNSELHFFIKQRRAVHFAWLSGAGIYH 251 (987)
Q Consensus 223 ~~~~s~l~~~~~~~~~~~faW~t~~gi~~ 251 (987)
+.+++..... +...--.|.+..|+..
T Consensus 315 pr~n~gn~ql---~gr~ge~W~~e~gvd~ 340 (353)
T COG4257 315 PRPNSGNIQL---DGRPGELWFTEAGVDA 340 (353)
T ss_pred CCCCCCceec---cCCCCceeecccCcce
Confidence 8777653333 2234567888888755
No 278
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=60.11 E-value=45 Score=40.32 Aligned_cols=115 Identities=12% Similarity=0.019 Sum_probs=69.5
Q ss_pred eeEEEE---eCCEEEEEecCCeEEEEeCCCCCce---eeEcC-CCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 24 ITCMSA---GNDVIVLGTSKGWLIRHDFGAGDSY---DIDLS-AGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 24 i~~~~v---~nn~l~~~~~~g~l~ridl~~~~~~---~~~l~-~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
++++.. ..+.+++||.-|.|++.+-.+-... -+..+ ......++|+-|--.|.+.-++.++- +..+--++
T Consensus 350 ~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs 426 (555)
T KOG1587|consen 350 ATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWS 426 (555)
T ss_pred eeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec---cceeEecc
Confidence 455554 3567899999999999766211111 11111 11223578999999999976666553 45554555
Q ss_pred cCCCCceeccCCC-Cce-EEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 97 AKWSKPRVLSKLK-GLV-VNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 97 ~~~~k~k~L~klk-g~~-i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
.... ..+|--++ ... +++|||.+.. -.-|.+|+.+|.|+.-.+..
T Consensus 427 ~~~~-~~Pl~~~~~~~~~v~~vaWSptr-----pavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 427 EDVI-ASPLLSLDSSPDYVTDVAWSPTR-----PAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred ccCC-CCcchhhhhccceeeeeEEcCcC-----ceEEEEEcCCCceehhhhhc
Confidence 4421 12332222 233 9999999432 22688888899888876654
No 279
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=59.96 E-value=3.8e+02 Score=32.35 Aligned_cols=124 Identities=18% Similarity=0.198 Sum_probs=64.4
Q ss_pred HHHHcCChhHHHHHHHhH--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHhH------C
Q 001978 517 LLESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIML------D 578 (987)
Q Consensus 517 ll~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~l~~~----~~~~~li~k~~~~Ll~~------~ 578 (987)
++...|..++++.+-+.. .-++.-..+|+..|++++|..++..+ ++....+..+...+... .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccccc
Confidence 566667777766665442 33455678999999999999988754 33223333333333111 1
Q ss_pred hHHHHHHHHcCCCCCCCcchhhh--hhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcC
Q 001978 579 AYETVESWMTTNNLNPRKLIPAM--MRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQ 646 (987)
Q Consensus 579 p~~ti~~l~~~~~ld~~~lip~L--~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~ 646 (987)
.+....++-+....-|....|.. +.+... ......+-.||...+.+ .-|.+.+.+-.||...
T Consensus 93 ~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g---~~F~~~~~~yl~~~l~K---gvPslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 93 VEKLLELYDELAEKYPRSDAPRRLPLDFLEG---DEFKERLDEYLRPQLRK---GVPSLFSNLKPLYKDP 156 (517)
T ss_pred HHHHHHHHHHHHHhCccccchhHhhcccCCH---HHHHHHHHHHHHHHHhc---CCchHHHHHHHHHcCh
Confidence 22333333222111122111110 111110 01123466788777755 3578888888899853
No 280
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=59.42 E-value=4.1e+02 Score=32.88 Aligned_cols=265 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHH-------HhhcCCCChHHHHHHhcCcCh-------HHHHHHHHHHHhhccCCchHHHHHH
Q 001978 395 LVQAEAAFATKDFHRAASFY-------AKINYILSFEEITLKFISVSE-------QDALRTFLLRKLDNLAKDDKCQITM 460 (987)
Q Consensus 395 ~~~~~~l~~~g~y~~Aa~~~-------~~~~~~~~~E~v~lkFl~~~~-------~~~L~~YL~~kl~~l~~~~~~q~~l 460 (987)
.....|++.-|.+++|+++- .+.. ..|-.....++...+ .+.|..--...+......|.-.+.+
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~--~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~Av 192 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQFQKIE--RSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAV 192 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGGS-TTT--THHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhhcchh--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHH
Q ss_pred --------------------HHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHH
Q 001978 461 --------------------ISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLES 520 (987)
Q Consensus 461 --------------------L~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~ 520 (987)
+-.|| |+-+..+..- +.........-.+.++++.+.+|=..+... +.+...
T Consensus 193 Y~ilg~cD~~~~~~~~V~~tiED~L-W~~L~~vr~~--~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p~~----- 263 (613)
T PF04097_consen 193 YKILGRCDLSRRHLPEVARTIEDWL-WLQLSLVRED--ERSSSSAYERYTLEDLQKLILKYGESHFNA-GSNPLL----- 263 (613)
T ss_dssp HHHHHT--CCC-S-TTC--SHHHHH-HHHHHH---T--TSSSSSSS----HHHHHHHHHHH-GGGCTT------------
T ss_pred HHHHhcCCccccchHHHhCcHHHHH-HHHHHhhccC--CCccccccccccHHHHHHHHHHhchhhccc-chhHHH-----
Q ss_pred cCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHH----HhHChHHHHHHHHcC-----CC
Q 001978 521 YGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDL----IMLDAYETVESWMTT-----NN 591 (987)
Q Consensus 521 ~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~~~~li~k~~~~L----l~~~p~~ti~~l~~~-----~~ 591 (987)
.....+-.|+|+.|+++|.+.....----.+|-.| |-..|....+-++.. ..
T Consensus 264 -------------------Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ 324 (613)
T PF04097_consen 264 -------------------YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP 324 (613)
T ss_dssp -------------------HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT----------------------
T ss_pred -------------------HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC
Q ss_pred CCCCcchhhhhhcCCCCCCCCChHHHHHHHHHH-HhhcCCCChhHHHHHHHHhhcCCC---------------------h
Q 001978 592 LNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFC-VHRLHNEDPGVHNLLLSLYAKQED---------------------D 649 (987)
Q Consensus 592 ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~l-i~~~~~~~~~ihn~ll~Ly~~~~~---------------------~ 649 (987)
+|..++|..-.+.... .++..|+.|+-.+ ....+....-+|..+-+|-++..+ +
T Consensus 325 ln~arLI~~Y~~~F~~----td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~ 400 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEI----TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERR 400 (613)
T ss_dssp --HHHHHHHHHHTTTT----T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHT
T ss_pred cCHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeecc
Q ss_pred HHHHHH------HHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHH
Q 001978 650 SALLRF------LQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALA 707 (987)
Q Consensus 650 ~kLl~f------L~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~ 707 (987)
.+|+.| +++. ...|-+-|.+.|.++.+|.||...|+|+.||+++
T Consensus 401 ~~Li~~~~~~~~~~~i--------------~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~ll 450 (613)
T PF04097_consen 401 LSLIKFDDDEDFLREI--------------IEQAAREAEERGRFEDAILLYHLAEEYDKVLSLL 450 (613)
T ss_dssp GGGGT-SSSSHHHHHH--------------HHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHH
T ss_pred ccccCCCCcHHHHHHH--------------HHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHH
No 281
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.31 E-value=2.7e+02 Score=34.54 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhccccCCChhhHHHHHHHHHhcCCCcCcccccCCCCCCc-chHHHHHHHHHHHHHHHHHHHHHH---
Q 001978 728 LRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFA-LIDDFKEAICSSLDDYNKQIEQLK--- 803 (987)
Q Consensus 728 ~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~~~~~l~i~dlL~~~p~~~-~I~~~Kd~L~~~L~~y~~~i~~l~--- 803 (987)
-|+-|-..|..+.++-|.-. ..-+..+++||.+.+ ...-.++|.|+.+-+ +.+++|..|..-|-+--.+|..-+
T Consensus 375 yRqlLiktih~cav~Fp~~a-atvV~~ll~fisD~N-~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~r 452 (948)
T KOG1058|consen 375 YRQLLIKTIHACAVKFPEVA-ATVVSLLLDFISDSN-EAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSKICR 452 (948)
T ss_pred HHHHHHHHHHHHhhcChHHH-HHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccccch
Confidence 34444444444444443221 134566678887765 344557777776644 567888877766655444443322
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhccccc
Q 001978 804 ---QEMNDATHGADNIRNDISALAQRYAVI 830 (987)
Q Consensus 804 ---~~m~~~~~~~~~l~~~i~~~~~r~~~i 830 (987)
-.+-+++....+++.-+...++....|
T Consensus 453 galwi~GeYce~~~~i~~~~k~i~~slGEv 482 (948)
T KOG1058|consen 453 GALWILGEYCEGLSEIQSVIKIIRQSLGEV 482 (948)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 233456666665655555555444333
No 282
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=59.04 E-value=85 Score=37.77 Aligned_cols=152 Identities=11% Similarity=0.121 Sum_probs=97.3
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.|-++|..++ +++-|-..+-|-.||. ...++.++.-| ..-|.-+-+++.|..++..+. +|..--+..
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH-----TdNVr~ll~~dDGt~~ls~sS---DgtIrlWdL 242 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH-----TDNVRVLLVNDDGTRLLSASS---DGTIRLWDL 242 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc-----ccceEEEEEcCCCCeEeecCC---CceEEeeec
Confidence 356889999988 6677777778888899 77777777655 467889999999999998876 887766666
Q ss_pred CCCCcee---ccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 98 KWSKPRV---LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 98 ~~~k~k~---L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
+..+... +.+ +| .=||. .+.+=..+--|..+|.||-+.+-.- +....++ +..+||..+...
T Consensus 243 gqQrCl~T~~vH~-e~----VWaL~----~~~sf~~vYsG~rd~~i~~Tdl~n~----~~~tlic---k~daPv~~l~~~ 306 (735)
T KOG0308|consen 243 GQQRCLATYIVHK-EG----VWALQ----SSPSFTHVYSGGRDGNIYRTDLRNP----AKSTLIC---KEDAPVLKLHLH 306 (735)
T ss_pred cccceeeeEEecc-Cc----eEEEe----eCCCcceEEecCCCCcEEecccCCc----hhheEee---cCCCchhhhhhc
Confidence 5543211 221 11 22333 1123347889999999999988532 1112222 223678877765
Q ss_pred eeccCCCceEEEEEECCCeEEEEecCC
Q 001978 175 TASLSNGTRYYVMAVTPTRLYSFTGFG 201 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~g~~ 201 (987)
.- + .-+-++||...+-.|.+..
T Consensus 307 ~~----~-~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 307 EH----D-NSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred cc----c-CCceeeeccccceecCCcc
Confidence 21 1 1222334578888886643
No 283
>KOG4328 consensus WD40 protein [Function unknown]
Probab=58.87 E-value=1e+02 Score=35.54 Aligned_cols=136 Identities=13% Similarity=0.247 Sum_probs=81.4
Q ss_pred CCceeEEEEeC----CEEEEEecCCeEEEEeCC---CCCceeeEcCCCCCCccceeEEEeCCCCC-eEEEEeecCCCccE
Q 001978 21 RGVITCMSAGN----DVIVLGTSKGWLIRHDFG---AGDSYDIDLSAGRPGEQSIHKVFVDPGGS-HCIATIVGSGGAET 92 (987)
Q Consensus 21 ~~~i~~~~v~n----n~l~~~~~~g~l~ridl~---~~~~~~~~l~~~~~~~~~i~~i~lDp~G~-hlli~~~~~~~g~~ 92 (987)
.+.|+|++-+. ++++.|-..|.|-.||++ |+. +.+-+=.+. .++|.+|...|... |++.++- +|..
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-d~v~~f~~h--s~~Vs~l~F~P~n~s~i~ssSy---DGti 259 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-DGVYLFTPH--SGPVSGLKFSPANTSQIYSSSY---DGTI 259 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-CceEEeccC--CccccceEecCCChhheeeecc---Ccee
Confidence 36799999864 788999999999999992 332 223221112 36899999999754 4555544 7988
Q ss_pred EEEecCCCCceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC-ccccceeeeeeeeCCCCCcee
Q 001978 93 FYTHAKWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK-DKREKYIKLLFELNELPEAFM 169 (987)
Q Consensus 93 ~Y~~~~~~k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~-~~~e~~~k~v~~l~~~~~~I~ 169 (987)
=|.+........+-.+++ .-+.+..++ ...+.+|+|+.-| .|- .|+-+ ++.+ |.+ ..+.+. .|+
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~------~e~~~vl~~~~~G-~f~-~iD~R~~~s~-~~~--~~lh~k--KI~ 326 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFS------AESRSVLFGDNVG-NFN-VIDLRTDGSE-YEN--LRLHKK--KIT 326 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeecccc------CCCccEEEeeccc-ceE-EEEeecCCcc-chh--hhhhhc--ccc
Confidence 888876554433333321 122232232 2456899999999 222 23222 1111 222 245543 599
Q ss_pred eEEEEe
Q 001978 170 GLQMET 175 (987)
Q Consensus 170 gi~~~~ 175 (987)
++.+..
T Consensus 327 sv~~NP 332 (498)
T KOG4328|consen 327 SVALNP 332 (498)
T ss_pred eeecCC
Confidence 999864
No 284
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=58.45 E-value=2.4e+02 Score=29.53 Aligned_cols=48 Identities=8% Similarity=0.050 Sum_probs=28.9
Q ss_pred HHHHHHHhcccHHHHHHHHhCC----CC---chhhHHhhHHHHHh-HChHHHHHHH
Q 001978 539 IVVHHYIQQGEAKKALQMLRKP----AV---PIDLQYKFAPDLIM-LDAYETVESW 586 (987)
Q Consensus 539 ~ll~~yi~~~~~~~AL~~l~~~----~~---~~~li~k~~~~Ll~-~~p~~ti~~l 586 (987)
.+..+|...|+|.+|+..+.+. ++ ..+..+..+..... .+.++++..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4667788999999998887653 11 12344544444443 4556666654
No 285
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=58.42 E-value=3.3e+02 Score=34.37 Aligned_cols=156 Identities=12% Similarity=0.099 Sum_probs=89.3
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC-----
Q 001978 25 TCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW----- 99 (987)
Q Consensus 25 ~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~----- 99 (987)
..+.....++++.+.+|.|-|..+..-...-+.+ + . ++.+..++.-.+..++++-|+ +|..|-+....
T Consensus 488 ~~~i~~e~v~VilTk~G~IKr~~~~~~~~saikL--K-e-gD~L~~~~~~~t~d~LllfTs---~Gr~yrf~v~eIP~GR 560 (735)
T TIGR01062 488 IDMIPKEPVTIILSKMGWVRSAKGHDIDLSTLKY--K-A-GDSEKAIIEGKSNQKVVFIDS---TGRSYALDPDNLPSAR 560 (735)
T ss_pred hhcccCcceEEEEecCCEEEeccccccchhccCc--C-C-CCeEEEEEEecCCCEEEEEEC---CCeEEEEEhHhcCcCc
Confidence 3445578899999999999999772111111222 1 2 356777777667777888887 79888775321
Q ss_pred CC---ceeccCC-CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 100 SK---PRVLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 100 ~k---~k~L~kl-kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
.+ ++.+-++ .|-.|.++...++ ...+|+.|++|..+.+.+..-...-+.=|.+..+++. ..+.++...
T Consensus 561 ~aGgpV~~~L~L~~gE~Iv~~~~v~~------~~~lLlaT~~GyGKrt~lse~~~~~RaGKgvi~Lk~~-d~lv~v~~v- 632 (735)
T TIGR01062 561 GQGEPLTGKLLLPIGATITNILMYSP------NQLLLMASDAGYGFLCNFNDLIARNKAGKALINLPEN-ASVIAPLPV- 632 (735)
T ss_pred cCCceeEeeecCCCCCEEEEEEEecC------CcEEEEEEcCCcEEEEEhHhccccCcCCeEEEEeCCC-CEEEEEEEE-
Confidence 11 1111112 2344555554421 1359999999999988775321111222444455543 234443322
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 001978 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.++...++++|...++..|.
T Consensus 633 ---~~~dd~V~liT~~GrlLrf~ 652 (735)
T TIGR01062 633 ---NGDSDMIAAITEAGRMLVFP 652 (735)
T ss_pred ---cCCCCEEEEEeCCCcEEEEE
Confidence 12223577778899998885
No 286
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.41 E-value=4.4 Score=45.03 Aligned_cols=18 Identities=39% Similarity=0.879 Sum_probs=14.4
Q ss_pred cCCChhHHHhHHHH--Hhhc
Q 001978 869 PCGHAFHAQCLIAH--VTQC 886 (987)
Q Consensus 869 pCgH~fH~~CL~~~--~~~~ 886 (987)
-|||.||..||..- ..|+
T Consensus 25 ~cGhifh~~cl~qwfe~~Ps 44 (465)
T KOG0827|consen 25 TCGHIFHTTCLTQWFEGDPS 44 (465)
T ss_pred chhhHHHHHHHHHHHccCCc
Confidence 49999999999874 3454
No 287
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.35 E-value=3.4e+02 Score=32.86 Aligned_cols=149 Identities=11% Similarity=0.116 Sum_probs=94.7
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE--ecCCCC
Q 001978 25 TCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT--HAKWSK 101 (987)
Q Consensus 25 ~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~--~~~~~k 101 (987)
..+.+-.|+++.|..++.|-.++. ..+.|..++-| .+-|+.|-++||--+++.+++ |-..--+ ...|..
T Consensus 61 ~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH-----~DyIR~iavHPt~P~vLtsSD---Dm~iKlW~we~~wa~ 132 (794)
T KOG0276|consen 61 AKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH-----SDYIRSIAVHPTLPYVLTSSD---DMTIKLWDWENEWAC 132 (794)
T ss_pred heeeeccceEEEecCCceEEEEecccceeeEEeecc-----ccceeeeeecCCCCeEEecCC---ccEEEEeeccCceee
Confidence 456667789999999999999999 88889999988 479999999999999998877 5544333 334433
Q ss_pred ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCC
Q 001978 102 PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNG 181 (987)
Q Consensus 102 ~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~ 181 (987)
.+.-. -.-|.|-+||+||. ++..|.-++-++.|=.-.+... ...+.|.+-...|-.|-+-. +++
T Consensus 133 ~qtfe-GH~HyVMqv~fnPk-----D~ntFaS~sLDrTVKVWslgs~-------~~nfTl~gHekGVN~Vdyy~---~gd 196 (794)
T KOG0276|consen 133 EQTFE-GHEHYVMQVAFNPK-----DPNTFASASLDRTVKVWSLGSP-------HPNFTLEGHEKGVNCVDYYT---GGD 196 (794)
T ss_pred eeEEc-CcceEEEEEEecCC-----CccceeeeeccccEEEEEcCCC-------CCceeeeccccCcceEEecc---CCC
Confidence 22222 24478999999943 2335777776765544444332 11123322122355555542 244
Q ss_pred ceEEEEEECCCeEEEE
Q 001978 182 TRYYVMAVTPTRLYSF 197 (987)
Q Consensus 182 ~~~~i~ast~~rly~f 197 (987)
.-++|-++.+..+--|
T Consensus 197 kpylIsgaDD~tiKvW 212 (794)
T KOG0276|consen 197 KPYLISGADDLTIKVW 212 (794)
T ss_pred cceEEecCCCceEEEe
Confidence 4577766665544444
No 288
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=58.33 E-value=29 Score=33.18 Aligned_cols=111 Identities=18% Similarity=0.200 Sum_probs=65.2
Q ss_pred ccHHHHHHHHhCCCCchhhHHhhHHHHHhHChHHHHHHHHcCCCCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHHhh
Q 001978 548 GEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHR 627 (987)
Q Consensus 548 ~~~~~AL~~l~~~~~~~~li~k~~~~Ll~~~p~~ti~~l~~~~~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~ 627 (987)
..|++.|.-+-...||.+.+.+|..|+.++-|..+- ... ....||.|+..
T Consensus 6 ~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~----------~s~--------------------L~~lLerc~~~ 55 (125)
T smart00777 6 QAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGK----------ESG--------------------LLTLLERCIRY 55 (125)
T ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCc----------hhh--------------------HHHHHHHHHHH
Confidence 456666644555668889999999999887774210 111 33334444433
Q ss_pred cC-----CCChhHHHHHHHHhhc-CCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhc-CcceeeehhhhccccH
Q 001978 628 LH-----NEDPGVHNLLLSLYAK-QEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKE-KRMRACVHIYGMMSMH 700 (987)
Q Consensus 628 ~~-----~~~~~ihn~ll~Ly~~-~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~-~~~~~~v~L~~~~g~~ 700 (987)
.. ..|+.+-. +...|++ .+++..+..||... + ++.+. -++++-+.++..+|.+
T Consensus 56 f~~~~~YknD~RyLk-iWi~ya~~~~dp~~if~~L~~~-~------------------IG~~~AlfYe~~A~~lE~~g~~ 115 (125)
T smart00777 56 FEDDERYKNDPRYLK-IWLKYADNCDEPRELFQFLYSK-G------------------IGTKLALFYEEWAQLLEAAGRY 115 (125)
T ss_pred hhhhhhhcCCHHHHH-HHHHHHHhcCCHHHHHHHHHHC-C------------------cchhhHHHHHHHHHHHHHcCCH
Confidence 21 12332221 2224444 23467788898876 1 22222 2567778889999999
Q ss_pred HHHHHHHH
Q 001978 701 EEAVALAL 708 (987)
Q Consensus 701 ~eAl~l~l 708 (987)
.+|.+++-
T Consensus 116 ~~A~~iy~ 123 (125)
T smart00777 116 KKADEVYQ 123 (125)
T ss_pred HHHHHHHH
Confidence 99988753
No 289
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.23 E-value=2.1e+02 Score=30.80 Aligned_cols=149 Identities=11% Similarity=0.096 Sum_probs=83.5
Q ss_pred EEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceecc
Q 001978 28 SAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLS 106 (987)
Q Consensus 28 ~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~ 106 (987)
||+--..+-...+|+|+..|+ +|..+.++.--. ..+-+-.+-=.++..+.+++.. |+|..--+.. ..+.++|.
T Consensus 25 avAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d---~~D~LfdV~Wse~~e~~~~~a~--GDGSLrl~d~-~~~s~Pi~ 98 (311)
T KOG0277|consen 25 AVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD---TEDGLFDVAWSENHENQVIAAS--GDGSLRLFDL-TMPSKPIH 98 (311)
T ss_pred heeehhhcccccCceEEEEecCCCCCeEEEEeee---cccceeEeeecCCCcceEEEEe--cCceEEEecc-CCCCcchh
Confidence 333333444457899999999 677665543110 0234555555677777666554 3787755552 22345677
Q ss_pred CCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceE
Q 001978 107 KLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRY 184 (987)
Q Consensus 107 klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~ 184 (987)
++|- ..|-||-||.- ....+|.++=+|.|=.- .+. ..+++.+ ..+-..-|.+..|..- ..+.
T Consensus 99 ~~kEH~~EV~Svdwn~~-----~r~~~ltsSWD~TiKLW--~~~--r~~Sv~T---f~gh~~~Iy~a~~sp~----~~nl 162 (311)
T KOG0277|consen 99 KFKEHKREVYSVDWNTV-----RRRIFLTSSWDGTIKLW--DPN--RPNSVQT---FNGHNSCIYQAAFSPH----IPNL 162 (311)
T ss_pred HHHhhhhheEEeccccc-----cceeEEeeccCCceEee--cCC--CCcceEe---ecCCccEEEEEecCCC----CCCe
Confidence 6665 48999999932 23467777667865432 221 1122332 3322244677776531 2356
Q ss_pred EEEEECCCeEEEEe
Q 001978 185 YVMAVTPTRLYSFT 198 (987)
Q Consensus 185 ~i~ast~~rly~f~ 198 (987)
+.-+|++..+--|.
T Consensus 163 fas~Sgd~~l~lwd 176 (311)
T KOG0277|consen 163 FASASGDGTLRLWD 176 (311)
T ss_pred EEEccCCceEEEEE
Confidence 67677766555454
No 290
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.01 E-value=4.7 Score=46.72 Aligned_cols=33 Identities=27% Similarity=0.569 Sum_probs=24.1
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
+..|++|-.+=.. -+.-.|||.|--.||..+..
T Consensus 186 ~~~CPICL~~~~~-------------------p~~t~CGHiFC~~CiLqy~~ 218 (513)
T KOG2164|consen 186 DMQCPICLEPPSV-------------------PVRTNCGHIFCGPCILQYWN 218 (513)
T ss_pred CCcCCcccCCCCc-------------------ccccccCceeeHHHHHHHHh
Confidence 6789999654222 12234999999999999873
No 291
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.97 E-value=31 Score=35.52 Aligned_cols=50 Identities=24% Similarity=0.193 Sum_probs=31.7
Q ss_pred HHHHchhhHHHHHHhcCCchh---HhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDPLQ---RDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~~~---~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
+++++.|+||+||....+... ...+....||-|+.+|+=.+|-.-|.+..
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKAL 186 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHH
Confidence 456667777777776654322 44556666777777777666666666654
No 292
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=57.92 E-value=59 Score=35.46 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=11.3
Q ss_pred HHchhhHHHHHHhcCCch---hHhHHHHHHHHHHHhcCCHHHHHHHHHh
Q 001978 371 YLDMKEYAAALANCRDPL---QRDQVYLVQAEAAFATKDFHRAASFYAK 416 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~~~---~~~~V~~~~~~~l~~~g~y~~Aa~~~~~ 416 (987)
++.+++|++|+++++... .-......++..+...|+|+++.+.+.+
T Consensus 87 l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 87 LLQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 356777777777765321 1223445566667777777777776665
No 293
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=57.83 E-value=1.1e+02 Score=33.76 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=69.5
Q ss_pred ceeEEEEeCCEEEEEecC----CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 23 VITCMSAGNDVIVLGTSK----GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~----g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
.+.-+|-+-+--+++|.| +.|-.+|++.-++.-+-+. ..+|.-.--||+--.++|||. ....|++..+
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ-----k~piraf~WdP~~prL~vctg---~srLY~W~ps 391 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ-----KHPIRAFEWDPGRPRLVVCTG---KSRLYFWAPS 391 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh-----ccceeEEEeCCCCceEEEEcC---CceEEEEcCC
Confidence 367788899999999988 4588889944444333222 246666666999999999997 3455666666
Q ss_pred CCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCC
Q 001978 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTG 138 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G 138 (987)
.....-.++ +|..|.++.|+-+. ..|++-+++.
T Consensus 392 g~~~V~vP~-~GF~i~~l~W~~~g------~~i~l~~kDa 424 (447)
T KOG4497|consen 392 GPRVVGVPK-KGFNIQKLQWLQPG------EFIVLCGKDA 424 (447)
T ss_pred CceEEecCC-CCceeeeEEecCCC------cEEEEEcCCc
Confidence 655555564 89999999999331 1355555554
No 294
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=57.62 E-value=1.3e+02 Score=30.32 Aligned_cols=65 Identities=12% Similarity=0.061 Sum_probs=44.6
Q ss_pred HHHHHHHhhccccCCHHHHHHHHHHcCC----hhHHHHHHHhHh-hHHHHHHHHHhcccHHHHHHHHhCC
Q 001978 496 REFRAFLSDCKDVLDEATTMKLLESYGR----VEELVFFASLKE-QHEIVVHHYIQQGEAKKALQMLRKP 560 (987)
Q Consensus 496 ~~l~~fl~~~~~~ld~~tv~~ll~~~g~----~e~~l~~a~~~~-dy~~ll~~yi~~~~~~~AL~~l~~~ 560 (987)
..++.||....-.=.+..+.++++..+. ...++...+..+ .|+.++..+++.|++-+|+++..+.
T Consensus 46 ~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 46 SQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 4556666543322234456666655443 344566666667 9999999999999999999999874
No 295
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=57.48 E-value=39 Score=37.99 Aligned_cols=66 Identities=21% Similarity=0.199 Sum_probs=54.1
Q ss_pred HHHHHHHhhccccCCHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCC
Q 001978 496 REFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAV 562 (987)
Q Consensus 496 ~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~ 562 (987)
+++..|-+.-+..+.-+..++.|-.+|...++..|-.++.+ +.-+.+|+.-|+|.+|.+.-.+..|
T Consensus 225 ~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~kd 290 (319)
T PF04840_consen 225 DELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKEKD 290 (319)
T ss_pred HHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 56666666555567777888888889999999888888888 8888999999999999998888777
No 296
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=57.35 E-value=10 Score=33.01 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=33.4
Q ss_pred chhhHHHHHHhcCC-----chh-HhHHHHHHHHHHHhcCCHHHHHHHHHh
Q 001978 373 DMKEYAAALANCRD-----PLQ-RDQVYLVQAEAAFATKDFHRAASFYAK 416 (987)
Q Consensus 373 ~~~~fe~Al~~~~~-----~~~-~~~V~~~~~~~l~~~g~y~~Aa~~~~~ 416 (987)
++|+|+.|+.+.+. |.. ...+....|.-+|..|+|.+|...+.+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 46889999988753 322 455677789999999999999998855
No 297
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.28 E-value=59 Score=37.28 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=38.0
Q ss_pred cCChhHHHHHHHh--HhhHHHHHHH------HHhcccHHHHHHHHhCCC----CchhhHHhhHHHH-HhHChHHHHHHHH
Q 001978 521 YGRVEELVFFASL--KEQHEIVVHH------YIQQGEAKKALQMLRKPA----VPIDLQYKFAPDL-IMLDAYETVESWM 587 (987)
Q Consensus 521 ~g~~e~~l~~a~~--~~dy~~ll~~------yi~~~~~~~AL~~l~~~~----~~~~li~k~~~~L-l~~~p~~ti~~l~ 587 (987)
.|+.+.++.|.+. .+|-...-.+ |-..|+.++||+...++. +..+.+++.+.+- +..+|.++|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 3556666555542 2333222211 224567777877776652 1134555554432 2368888888888
Q ss_pred cCC
Q 001978 588 TTN 590 (987)
Q Consensus 588 ~~~ 590 (987)
+..
T Consensus 583 q~~ 585 (840)
T KOG2003|consen 583 QAN 585 (840)
T ss_pred Hhc
Confidence 754
No 298
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=57.13 E-value=14 Score=27.29 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=20.0
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC
Q 001978 24 ITCMSAGNDVIVLGTSKGWLIRHDF 48 (987)
Q Consensus 24 i~~~~v~nn~l~~~~~~g~l~ridl 48 (987)
.++++|.++.+++++.+|.|+.+|.
T Consensus 14 ~~~~~v~~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 14 WSSPAVAGGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp -S--EECTSEEEEE-TTSEEEEEET
T ss_pred CcCCEEECCEEEEEcCCCEEEEEeC
Confidence 3678999999999999999999986
No 299
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=57.10 E-value=2e+02 Score=31.93 Aligned_cols=156 Identities=15% Similarity=0.178 Sum_probs=88.2
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeCCCCC-ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGND--VIVLGTSKGWLIRHDFGAGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~nn--~l~~~~~~g~l~ridl~~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
...|+|.|-+.+ +++++..+..|..+--...+ -+..... +.-+..|+.|--.|.+..+.-|.. -.+-|+-.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl--s~Hd~~vtgvdWap~snrIvtcs~----drnayVw~ 83 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL--SEHDKIVTGVDWAPKSNRIVTCSH----DRNAYVWT 83 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh--hhhCcceeEEeecCCCCceeEccC----CCCccccc
Confidence 356999999988 45666666667666552222 2222211 111567888888899988888876 34444433
Q ss_pred C-----CCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC-cc-ccceeeeeeeeCCCCCceee
Q 001978 98 K-----WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK-DK-REKYIKLLFELNELPEAFMG 170 (987)
Q Consensus 98 ~-----~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~-~~-~e~~~k~v~~l~~~~~~I~g 170 (987)
+ |.+.-+|-++ |...++|-|. +.. ..|.+|+.--.|-.+..+.. +- .-|.+| -|- .+.|+.
T Consensus 84 ~~~~~~WkptlvLlRi-NrAAt~V~Ws-P~e-----nkFAVgSgar~isVcy~E~ENdWWVsKhik----kPi-rStv~s 151 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRI-NRAATCVKWS-PKE-----NKFAVGSGARLISVCYYEQENDWWVSKHIK----KPI-RSTVTS 151 (361)
T ss_pred cCCCCeeccceeEEEe-ccceeeEeec-CcC-----ceEEeccCccEEEEEEEecccceehhhhhC----Ccc-ccceee
Confidence 2 3344445553 6799999999 432 26999876554554444432 10 111111 121 255899
Q ss_pred EEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 171 LQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 171 i~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
+.|.. + .=.+..-+|+.+.+-|..
T Consensus 152 ldWhp----n-nVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 152 LDWHP----N-NVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred eeccC----C-cceecccccCcceeEEEE
Confidence 99974 2 122333345666666653
No 300
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=57.00 E-value=24 Score=29.54 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=38.2
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+...+.. ..-..+....|..++..|++++|.+.|.+..
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999887531 1123678889999999999999999998765
No 301
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=56.99 E-value=1.4e+02 Score=36.26 Aligned_cols=124 Identities=10% Similarity=0.098 Sum_probs=75.7
Q ss_pred ceehhHHHHHhhcCCCceeEEEEeCCE-EEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEee
Q 001978 7 VFQVDVLERYAAKGRGVITCMSAGNDV-IVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIV 85 (987)
Q Consensus 7 ~f~~~~~~~~~~~~~~~i~~~~v~nn~-l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~ 85 (987)
+|.=++..+.|.--.|-+..++|-.+- +.=.-..|.|.+||+..+-+.+..-+ ..-|..|-+-+.+.+++.|..
T Consensus 165 lWk~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~gh-----tn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 165 LWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGH-----TNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred eccCCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeecc-----ceEEEEEEecCCCCeEEEecC
Confidence 344456666666555667788887773 34444669999999965655555444 356666766677777777766
Q ss_pred cCCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 86 GSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 86 ~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
|+..-.+....- ...+. +-+-.|=|+.. ..+|.|++|++||.|+......
T Consensus 240 ---DrtlriW~~~e~-~q~I~-lPttsiWsa~~-------L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 240 ---DRTLRIWKKDEC-VQVIT-LPTTSIWSAKV-------LLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ---CceEEEeecCce-EEEEe-cCccceEEEEE-------eeCCCEEEeccCceEEEEEecc
Confidence 777655543311 11111 11222322222 2357999999999999887763
No 302
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=56.94 E-value=3.1e+02 Score=30.42 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=88.2
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC--CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 21 ~~~i~~~~v~nn~l~~~~~~g~l~ridl--~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
...|.++...-+-+++.+.+ +|+.+.. +|.....++.-..+ .+ =.-++|+-.-.++..-+-..|++--++..
T Consensus 94 ~~~I~~V~l~r~riVvvl~~-~I~VytF~~n~k~l~~~et~~NP--kG---lC~~~~~~~k~~LafPg~k~GqvQi~dL~ 167 (346)
T KOG2111|consen 94 NSEIKAVKLRRDRIVVVLEN-KIYVYTFPDNPKLLHVIETRSNP--KG---LCSLCPTSNKSLLAFPGFKTGQVQIVDLA 167 (346)
T ss_pred ccceeeEEEcCCeEEEEecC-eEEEEEcCCChhheeeeecccCC--Cc---eEeecCCCCceEEEcCCCccceEEEEEhh
Confidence 34589999999999999988 8888888 45544444432100 01 12334443332222221124667667766
Q ss_pred CCCc---eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCC--CCCceeeEEE
Q 001978 99 WSKP---RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE--LPEAFMGLQM 173 (987)
Q Consensus 99 ~~k~---k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~--~~~~I~gi~~ 173 (987)
+.++ ..+. -..-.|.||+.|.+ ++ -+--++.+|.+.... +..++ ..++++.. .+..|..|.+
T Consensus 168 ~~~~~~p~~I~-AH~s~Iacv~Ln~~-Gt-----~vATaStkGTLIRIF-dt~~g-----~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 168 STKPNAPSIIN-AHDSDIACVALNLQ-GT-----LVATASTKGTLIRIF-DTEDG-----TLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred hcCcCCceEEE-cccCceeEEEEcCC-cc-----EEEEeccCcEEEEEE-EcCCC-----cEeeeeecCCchheEEEEEe
Confidence 6655 3333 35679999999933 21 345566789776542 22211 12334431 1345788877
Q ss_pred EeeccCCCceEEEEEECCCeEEEEe
Q 001978 174 ETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
. .+..++.++|....|.-|.
T Consensus 235 S-----p~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 235 S-----PNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred C-----CCccEEEEEcCCCeEEEEE
Confidence 5 3457888888866666664
No 303
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=56.76 E-value=25 Score=40.35 Aligned_cols=73 Identities=22% Similarity=0.177 Sum_probs=51.1
Q ss_pred HhhcCCCceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 16 YAAKGRGVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 16 ~~~~~~~~i~~~~v~--nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
.+..+.+.+..|..+ |-++.+|-.+|+|-.|.. -++-...+..+ .+.|..|-+||+|.+++-+-- +..+
T Consensus 246 ~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH-----~g~V~siAv~~~G~YMaTtG~---Dr~~ 317 (545)
T KOG1272|consen 246 SIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCH-----RGPVSSIAVDRGGRYMATTGL---DRKV 317 (545)
T ss_pred HHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhc-----CCCcceEEECCCCcEEeeccc---ccce
Confidence 334455566666654 568899999999999988 55555566666 367999999999998876543 4444
Q ss_pred EEEe
Q 001978 93 FYTH 96 (987)
Q Consensus 93 ~Y~~ 96 (987)
=.|.
T Consensus 318 kIWD 321 (545)
T KOG1272|consen 318 KIWD 321 (545)
T ss_pred eEee
Confidence 3443
No 304
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=55.94 E-value=12 Score=40.96 Aligned_cols=67 Identities=10% Similarity=0.176 Sum_probs=48.1
Q ss_pred EEEEeCCEEEEEecCCeEEEEeCCCCCc-eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 26 CMSAGNDVIVLGTSKGWLIRHDFGAGDS-YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 26 ~~~v~nn~l~~~~~~g~l~ridl~~~~~-~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
++.+..++|++|...|.||.+||.+++. .--.+..+. +...|.+..+...|..++.+++ +|.++=+.
T Consensus 314 ~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~-~~~tVRQ~sfS~dgs~lv~vcd---d~~Vwrwd 381 (385)
T KOG1034|consen 314 AFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK-SGSTVRQTSFSRDGSILVLVCD---DGTVWRWD 381 (385)
T ss_pred eecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc-ccceeeeeeecccCcEEEEEeC---CCcEEEEE
Confidence 3445567889999999999999933332 222233222 2479999999999999988888 78876554
No 305
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=55.93 E-value=6.2 Score=44.89 Aligned_cols=35 Identities=26% Similarity=0.651 Sum_probs=27.3
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
-+|++|-.++...- ..++--+|.|+||-.|+.+--
T Consensus 176 PTCpVCLERMD~s~---------------~gi~t~~c~Hsfh~~cl~~w~ 210 (493)
T KOG0804|consen 176 PTCPVCLERMDSST---------------TGILTILCNHSFHCSCLMKWW 210 (493)
T ss_pred CCcchhHhhcCccc---------------cceeeeecccccchHHHhhcc
Confidence 47999988887721 156778999999999998753
No 306
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=55.88 E-value=3.7e+02 Score=34.06 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=88.6
Q ss_pred EEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC----
Q 001978 26 CMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS---- 100 (987)
Q Consensus 26 ~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~---- 100 (987)
.+-...+++++.+..|.|-|..+ .-... -+.+ + .++.+..++.-.+..++++.|+ .|..|.+....-
T Consensus 502 dlI~~e~~lVllTk~GyIKR~~l~~f~~~-aikL--k--e~D~Lv~v~~~~t~d~LllfT~---~Grv~r~~~~eIP~gr 573 (742)
T PRK05561 502 ALIPDEPVTVVLSKKGWVRRAKGHSIDAS-GLSF--K--EGDSLLFAFEARTTDKLLLFTS---TGRVYSLPVHELPSAR 573 (742)
T ss_pred hcccCcceEEEEecCCEEEeccchhhhhh-cccc--C--CCCeEEEEEEecCCCeEEEEEC---CCcEEEeEHHhCCCcC
Confidence 34556778999999999999988 21111 1222 1 2467888888777888888888 798887753211
Q ss_pred -Cce---eccCC-CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 101 -KPR---VLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 101 -k~k---~L~kl-kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
+-. .+-+| .|-.|.++...++ ...+++.|++|.+..+.+..-...-+.-+.+..+.+ ++.+-++....
T Consensus 574 a~Gv~i~~~i~L~~gE~Iv~~~~~~~------~~~lllvT~~G~~KRt~lse~~~~~R~gkg~i~Lk~-~D~Lv~a~~v~ 646 (742)
T PRK05561 574 GDGEPLTGLVDLAPGEEIVHVLAFDP------DQKLLLASSAGYGFVVTLEDLVARTRAGKAVINLKD-GDEVLPPVPVE 646 (742)
T ss_pred CCCcChhhhcCCCCCceEEEEEEEcC------CcEEEEEECCCcEEEEEhhhccccCCCCeEEEEeCC-CCEEEEEEEeC
Confidence 111 11122 2334444443211 225999999999888877532111111133344442 34455555431
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 001978 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (987)
++ ..++++|...+...|.
T Consensus 647 ----~~-d~I~liT~~G~~irf~ 664 (742)
T PRK05561 647 ----DD-DHLAAITSNGRLLVFP 664 (742)
T ss_pred ----CC-CEEEEEeCCCcEEEEE
Confidence 21 3577777788888775
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=55.59 E-value=1.2e+02 Score=35.15 Aligned_cols=99 Identities=8% Similarity=0.101 Sum_probs=55.3
Q ss_pred EEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC--CCCeEEEEeecCCCccEEEEecCCCCc
Q 001978 26 CMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP--GGSHCIATIVGSGGAETFYTHAKWSKP 102 (987)
Q Consensus 26 ~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp--~G~hlli~~~~~~~g~~~Y~~~~~~k~ 102 (987)
.+++.++.+|++..+|.|+.+|. +...+-+.+..... .+-.| .+..+++.+. +|..|-++...-+
T Consensus 289 ~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~--------~~~sp~v~~g~l~v~~~---~G~l~~ld~~tG~- 356 (394)
T PRK11138 289 DFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR--------LLTAPVLYNGYLVVGDS---EGYLHWINREDGR- 356 (394)
T ss_pred CcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC--------cccCCEEECCEEEEEeC---CCEEEEEECCCCC-
Confidence 46788999999999999999999 55443222211100 11112 2456677666 6777666654322
Q ss_pred eeccCCC--CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEE
Q 001978 103 RVLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMA 144 (987)
Q Consensus 103 k~L~klk--g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~ 144 (987)
.+.+.+ +..+ +..+.. ..+.+++||.+|.||...
T Consensus 357 -~~~~~~~~~~~~----~s~P~~---~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 357 -FVAQQKVDSSGF----LSEPVV---ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred -EEEEEEcCCCcc----eeCCEE---ECCEEEEEeCCceEEEEe
Confidence 221111 1111 111111 134799999999998754
No 308
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=55.38 E-value=3.1e+02 Score=29.91 Aligned_cols=139 Identities=11% Similarity=0.102 Sum_probs=91.9
Q ss_pred cCCCceeEEEEe---CCEEEEEecCCeEEEEeCCCCCceeeEcCCCC--CCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 19 KGRGVITCMSAG---NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGR--PGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 19 ~~~~~i~~~~v~---nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~--~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
-.+|-|+.++.. .++++=+-...+++.++|..++. ++=.|.++ +-.-.|.++-+.|.|.+++..+- +|...
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~-~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw---D~~lr 88 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI-KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW---DGTLR 88 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc-ccCceeeeeeccceEecceEEccCCceEEeccc---cceEE
Confidence 345667777765 45778888889999999943332 12222221 11357889999999999998887 89988
Q ss_pred EEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCC--CCceeeE
Q 001978 94 YTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNEL--PEAFMGL 171 (987)
Q Consensus 94 Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~--~~~I~gi 171 (987)
-+....-+....-...+.+|.|||++++ .+.|+-|..+-.|-..++.+. + .|++.+. .+=|..+
T Consensus 89 lWDl~~g~~t~~f~GH~~dVlsva~s~d------n~qivSGSrDkTiklwnt~g~------c--k~t~~~~~~~~WVscv 154 (315)
T KOG0279|consen 89 LWDLATGESTRRFVGHTKDVLSVAFSTD------NRQIVSGSRDKTIKLWNTLGV------C--KYTIHEDSHREWVSCV 154 (315)
T ss_pred EEEecCCcEEEEEEecCCceEEEEecCC------CceeecCCCcceeeeeeeccc------E--EEEEecCCCcCcEEEE
Confidence 8776554433322235679999999943 347999999988887777653 1 2344421 2347888
Q ss_pred EEEe
Q 001978 172 QMET 175 (987)
Q Consensus 172 ~~~~ 175 (987)
.|.+
T Consensus 155 rfsP 158 (315)
T KOG0279|consen 155 RFSP 158 (315)
T ss_pred EEcC
Confidence 8763
No 309
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.89 E-value=1.5e+02 Score=37.39 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=40.3
Q ss_pred HHHHHHHcCChhHHHHHHHhH-hhHHHHH----HHHHhcccHHHHHHHHhCCCCc-hhhHHhhHHHHHhHChHHHHHHHH
Q 001978 514 TMKLLESYGRVEELVFFASLK-EQHEIVV----HHYIQQGEAKKALQMLRKPAVP-IDLQYKFAPDLIMLDAYETVESWM 587 (987)
Q Consensus 514 v~~ll~~~g~~e~~l~~a~~~-~dy~~ll----~~yi~~~~~~~AL~~l~~~~~~-~~li~k~~~~Ll~~~p~~ti~~l~ 587 (987)
|..+.-.-|.++.++..|... .--+.|+ .+|++++.|..|-+++.+...+ .+...|| |.+..++.+..++
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEEVaLKF----l~~~~~~~L~~~L 439 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEEVALKF----LEINQERALRTFL 439 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH----HhcCCHHHHHHHH
Confidence 455555667777777777665 3333333 5777788888888877665322 2233333 3444445555554
No 310
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=54.74 E-value=1.8e+02 Score=32.05 Aligned_cols=124 Identities=10% Similarity=0.071 Sum_probs=67.4
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCC
Q 001978 31 NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLK 109 (987)
Q Consensus 31 nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klk 109 (987)
++.++-+-.+.+|.-||. .+..+.+...+- .-|+-+..--.|-.++.+ . +.+|..--+....+.+..+.. -
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~-----~~vNs~~p~rrg~~lv~S-g-sdD~t~kl~D~R~k~~~~t~~-~ 173 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIRKHKGHT-----SFVNSLDPSRRGPQLVCS-G-SDDGTLKLWDIRKKEAIKTFE-N 173 (338)
T ss_pred CCEEEEecCCceEEEEecccceeeehhcccc-----ceeeecCccccCCeEEEe-c-CCCceEEEEeecccchhhccc-c
Confidence 444444445557788888 555555555541 223333222235544443 3 246776555554443322221 1
Q ss_pred CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 110 GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 110 g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
-+.+++|+|+.. . -+++.|.=++.|=.- +.++ -.-+|.+.+-..+|+|+...+
T Consensus 174 kyqltAv~f~d~-s-----~qv~sggIdn~ikvW--d~r~-----~d~~~~lsGh~DtIt~lsls~ 226 (338)
T KOG0265|consen 174 KYQLTAVGFKDT-S-----DQVISGGIDNDIKVW--DLRK-----NDGLYTLSGHADTITGLSLSR 226 (338)
T ss_pred ceeEEEEEeccc-c-----cceeeccccCceeee--cccc-----CcceEEeecccCceeeEEecc
Confidence 369999999932 1 267888767654332 2221 133567776567899999864
No 311
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.65 E-value=14 Score=35.47 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=65.5
Q ss_pred ccHHHHHHHHhCCCCchhhHHhhHHHHHhHChHHHHHHHHcCCCCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHHhh
Q 001978 548 GEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHR 627 (987)
Q Consensus 548 ~~~~~AL~~l~~~~~~~~li~k~~~~Ll~~~p~~ti~~l~~~~~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~ 627 (987)
..|++.|.......||.+.+.+|..|+.++.|.. + ........|+.|+..
T Consensus 6 ~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~-----------~-------------------~~~~L~~lLer~~~~ 55 (126)
T PF08311_consen 6 QEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSG-----------G-------------------KQSGLLELLERCIRK 55 (126)
T ss_dssp HHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTC-----------C-------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCC-----------C-------------------chhHHHHHHHHHHHH
Confidence 3566677766656688999999999999888751 0 011233444555443
Q ss_pred cCC-----CChhHHHHHHHHhhcC-CChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhc-CcceeeehhhhccccH
Q 001978 628 LHN-----EDPGVHNLLLSLYAKQ-EDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKE-KRMRACVHIYGMMSMH 700 (987)
Q Consensus 628 ~~~-----~~~~ihn~ll~Ly~~~-~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~-~~~~~~v~L~~~~g~~ 700 (987)
... .|+.+-. +...|++. .++.++..||.+. + ++.+. .++.+-+.++.+.|++
T Consensus 56 f~~~~~Y~nD~Rylk-iWi~ya~~~~~~~~if~~l~~~-~------------------IG~~~A~fY~~wA~~le~~~~~ 115 (126)
T PF08311_consen 56 FKDDERYKNDERYLK-IWIKYADLSSDPREIFKFLYSK-G------------------IGTKLALFYEEWAEFLEKRGNF 115 (126)
T ss_dssp HTTSGGGTT-HHHHH-HHHHHHTTBSHHHHHHHHHHHH-T------------------TSTTBHHHHHHHHHHHHHTT-H
T ss_pred HhhhHhhcCCHHHHH-HHHHHHHHccCHHHHHHHHHHc-C------------------ccHHHHHHHHHHHHHHHHcCCH
Confidence 321 1222222 22345553 3457788898886 1 22222 2566778888999999
Q ss_pred HHHHHHHH
Q 001978 701 EEAVALAL 708 (987)
Q Consensus 701 ~eAl~l~l 708 (987)
++|..++-
T Consensus 116 ~~A~~I~~ 123 (126)
T PF08311_consen 116 KKADEIYQ 123 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 312
>PRK05560 DNA gyrase subunit A; Validated
Probab=54.52 E-value=3.2e+02 Score=35.05 Aligned_cols=158 Identities=13% Similarity=0.211 Sum_probs=89.4
Q ss_pred EEeCCEEEEEecCCeEEEEeC-CCCC--ceeeEc--CCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC---
Q 001978 28 SAGNDVIVLGTSKGWLIRHDF-GAGD--SYDIDL--SAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW--- 99 (987)
Q Consensus 28 ~v~nn~l~~~~~~g~l~ridl-~~~~--~~~~~l--~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~--- 99 (987)
-...+++++.++.|.+-|+++ .-.. .....+ -... .+..+..++.=.++.++++-|+ .|..|++....
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klK-e~D~l~~~~~~~t~d~LllfTs---~Grv~~l~v~~iP~ 570 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTK-EDDFVEHLFVASTHDTLLFFTN---RGRVYRLKVYEIPE 570 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccC-CCCeeEEEEEecCCCeEEEEec---CCeEEEEEhhhCcC
Confidence 345689999999999999987 2111 110111 0001 1357777888788888998888 89999885321
Q ss_pred ----CCceec---cCCC-C-ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceee
Q 001978 100 ----SKPRVL---SKLK-G-LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMG 170 (987)
Q Consensus 100 ----~k~k~L---~klk-g-~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~g 170 (987)
.+-.++ -++. | ..|.+++.++. .....+++.|++|.+--..+..-....+.-+..+.+.+. ..+.+
T Consensus 571 ~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~----~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~-D~lv~ 645 (805)
T PRK05560 571 ASRTARGRPIVNLLPLEPGEKITAILPVREF----DDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEG-DELIG 645 (805)
T ss_pred CCcCCCCeEHHHhcCCCCCceEEEEEeccCC----CCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCC-CEEEE
Confidence 112222 1121 2 34555565521 123368889999988877664321111111233445432 23444
Q ss_pred EEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 171 LQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 171 i~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
+... ++...++++|...++|.|..
T Consensus 646 v~~~-----~~~d~lll~T~~Gr~~r~~~ 669 (805)
T PRK05560 646 VRLT-----DGDDDILLATKNGKAIRFPE 669 (805)
T ss_pred EEEe-----CCCCEEEEEECCCcEEEEEh
Confidence 4432 22356777788999998854
No 313
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=54.36 E-value=1.4e+02 Score=33.51 Aligned_cols=149 Identities=10% Similarity=0.031 Sum_probs=88.7
Q ss_pred CCceeEEEEeCCEEEEEe--cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGNDVIVLGT--SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~nn~l~~~~--~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
+-+|+.+--+.+.-.+++ ..++|..+|. +.+-.....=+ ...+..|-+|..|..++-|+. +-...-+..
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGH-----t~sv~di~~~a~Gk~l~tcSs---Dl~~~LWd~ 179 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGH-----TDSVFDISFDASGKYLATCSS---DLSAKLWDF 179 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcc-----ccceeEEEEecCccEEEecCC---ccchhheeH
Confidence 345777777777655544 5999999999 54432222222 245899999999998888776 554333333
Q ss_pred C--CCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 98 K--WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 98 ~--~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
. ..+.|.+.. ..+.|.||++-| .. ..|+=...+-.|..-+++.+ |+ +++++.-++=|.-|.+.
T Consensus 180 ~~~~~c~ks~~g-h~h~vS~V~f~P-~g-----d~ilS~srD~tik~We~~tg-----~c--v~t~~~h~ewvr~v~v~- 244 (406)
T KOG0295|consen 180 DTFFRCIKSLIG-HEHGVSSVFFLP-LG-----DHILSCSRDNTIKAWECDTG-----YC--VKTFPGHSEWVRMVRVN- 244 (406)
T ss_pred HHHHHHHHHhcC-cccceeeEEEEe-cC-----CeeeecccccceeEEecccc-----ee--EEeccCchHhEEEEEec-
Confidence 2 223344432 447899999983 21 24555667788887777654 23 33454322324444432
Q ss_pred eccCCCceEEEEEE--CCCeEEEEe
Q 001978 176 ASLSNGTRYYVMAV--TPTRLYSFT 198 (987)
Q Consensus 176 ~~~~~~~~~~i~as--t~~rly~f~ 198 (987)
+ ...|+|| ++.++-.|.
T Consensus 245 ----~--DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 245 ----Q--DGTIIASCSNDQTLRVWV 263 (406)
T ss_pred ----C--CeeEEEecCCCceEEEEE
Confidence 2 2445554 467788785
No 314
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.11 E-value=1.2e+02 Score=32.34 Aligned_cols=111 Identities=13% Similarity=0.196 Sum_probs=68.7
Q ss_pred EeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeE-EEeCCC-CCeEEEEeecCCCccEEEEec---CCCCce
Q 001978 29 AGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHK-VFVDPG-GSHCIATIVGSGGAETFYTHA---KWSKPR 103 (987)
Q Consensus 29 v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~-i~lDp~-G~hlli~~~~~~~g~~~Y~~~---~~~k~k 103 (987)
...+-|+-+.++|+|-.+...++........+ .+-.++|-+ .|..|. |..|..|+= +|.+..+.. +++|..
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L-~Gh~GPVwqv~wahPk~G~iLAScsY---DgkVIiWke~~g~w~k~~ 96 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAEL-TGHSGPVWKVAWAHPKFGTILASCSY---DGKVIIWKEENGRWTKAY 96 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEe-cCCCCCeeEEeecccccCcEeeEeec---CceEEEEecCCCchhhhh
Confidence 44556666777777777777333321111111 112356665 477885 998888888 899987765 344433
Q ss_pred eccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 104 VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 104 ~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
.-.- ....|.||+|-+..+ .-.+.+|+++|.|-....+..
T Consensus 97 e~~~-h~~SVNsV~waphey----gl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 97 EHAA-HSASVNSVAWAPHEY----GLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred hhhh-hcccceeeccccccc----ceEEEEeeCCCcEEEEEEcCC
Confidence 3222 234899999995543 235677899999887777654
No 315
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.74 E-value=2.2e+02 Score=31.40 Aligned_cols=103 Identities=10% Similarity=0.061 Sum_probs=65.5
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEec--CCCCceeccCC--CCceEEEEeecCCCCCCCCcceEEEE-cCCC-
Q 001978 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA--KWSKPRVLSKL--KGLVVNAVAWNRQQITEASTKEIILG-TDTG- 138 (987)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~--~~~k~k~L~kl--kg~~i~sVaw~~~~~~~~st~~iLiG-t~~G- 138 (987)
.+-|+.+..|+.|+++..|+. |+.+-.+.. .+.+-..-++. .+-.|-.|.|-+|... .+|-- +-++
T Consensus 13 ~DlihdVs~D~~GRRmAtCSs---Dq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfG-----qvvA~cS~Drt 84 (361)
T KOG2445|consen 13 KDLIHDVSFDFYGRRMATCSS---DQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFG-----QVVATCSYDRT 84 (361)
T ss_pred cceeeeeeecccCceeeeccC---CCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcccc-----ceEEEEecCCc
Confidence 467999999999999999987 776644442 22222222222 4558999999977643 45544 3454
Q ss_pred -cEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 139 -QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 139 -~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
.|+|=.-+.-+...+.++....+.+..+.|+.|+|..
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP 122 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAP 122 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecc
Confidence 3454321111233456777777877668899999964
No 316
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=53.60 E-value=1.4e+02 Score=37.90 Aligned_cols=152 Identities=14% Similarity=0.169 Sum_probs=90.2
Q ss_pred eeEEEEeCCEEEEEecC----CeEEEEeC---CCCCc-eeeEcCCC----CCCccceeEEEeCCCCCeEEEEeecCCCcc
Q 001978 24 ITCMSAGNDVIVLGTSK----GWLIRHDF---GAGDS-YDIDLSAG----RPGEQSIHKVFVDPGGSHCIATIVGSGGAE 91 (987)
Q Consensus 24 i~~~~v~nn~l~~~~~~----g~l~ridl---~~~~~-~~~~l~~~----~~~~~~i~~i~lDp~G~hlli~~~~~~~g~ 91 (987)
|-+++|+.+..-+|+.. |.+..|+. .++.- ....+|+. ..-++.|+.++..|.|.++.+.++ +.-
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD---D~~ 92 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD---DRL 92 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC---cce
Confidence 88999999999999866 23335544 22211 11114432 112479999999999999999888 666
Q ss_pred EEEEecC-------------------CCCceeccCCCCceEEEEeecCCCCCCCCcceEEE-EcCCCcEEEEEeccCccc
Q 001978 92 TFYTHAK-------------------WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIIL-GTDTGQLHEMAVDEKDKR 151 (987)
Q Consensus 92 ~~Y~~~~-------------------~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLi-Gt~~G~i~e~~i~~~~~~ 151 (987)
..-+... |+.+..|.. +..+|.-|+|.+.. .+|+ |.-++.|....-
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~-------~~lvS~s~DnsViiwn~------ 158 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDD-------SLLVSVSLDNSVIIWNA------ 158 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCc-------cEEEEecccceEEEEcc------
Confidence 5444322 222333332 44589999999521 3444 455666655432
Q ss_pred cceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 152 EKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 152 e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
+.++.+-.+.+-.+.|-|+.|+... +|+.--+.+..|-.|.
T Consensus 159 -~tF~~~~vl~~H~s~VKGvs~DP~G-----ky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 159 -KTFELLKVLRGHQSLVKGVSWDPIG-----KYFASQSDDRTLKVWR 199 (942)
T ss_pred -ccceeeeeeecccccccceEECCcc-----CeeeeecCCceEEEEE
Confidence 1233333344334779999998542 5665555555555564
No 317
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.56 E-value=47 Score=35.24 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=76.9
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC-CceeccCCCCc--eEEEEeecCCCCCCCCcceEEEEcC-CCcE
Q 001978 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS-KPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTD-TGQL 140 (987)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~-k~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiGt~-~G~i 140 (987)
.+.|+.+-+|-.|..+.-|+. |+.+-.+....+ +-+.|..|+|+ +|--|+|-+|.. |.||--++ +|.|
T Consensus 11 ~D~IHda~lDyygkrlATcsS---D~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~-----G~iLAScsYDgkV 82 (299)
T KOG1332|consen 11 EDMIHDAQLDYYGKRLATCSS---DGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKF-----GTILASCSYDGKV 82 (299)
T ss_pred hhhhhHhhhhhhcceeeeecC---CccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccccc-----CcEeeEeecCceE
Confidence 467899999999999998887 887766554444 34778888886 899999998764 46887654 7887
Q ss_pred EEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEE-EEC--CCeEEEEecC
Q 001978 141 HEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVM-AVT--PTRLYSFTGF 200 (987)
Q Consensus 141 ~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~-ast--~~rly~f~g~ 200 (987)
..-.=+.+ .+.+.++-..-.++|.+|.|.. .+.+.++. |+. ..++..|.+.
T Consensus 83 IiWke~~g-----~w~k~~e~~~h~~SVNsV~wap----heygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 83 IIWKEENG-----RWTKAYEHAAHSASVNSVAWAP----HEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred EEEecCCC-----chhhhhhhhhhcccceeecccc----cccceEEEEeeCCCcEEEEEEcCC
Confidence 76433322 2333332221125699999974 23344433 333 4567777553
No 318
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=53.54 E-value=2.4e+02 Score=34.07 Aligned_cols=109 Identities=12% Similarity=0.047 Sum_probs=64.3
Q ss_pred CCEEEEEecCCeEEEEeC--CCCCceeeEcCCCCC-CccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccC
Q 001978 31 NDVIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRP-GEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSK 107 (987)
Q Consensus 31 nn~l~~~~~~g~l~ridl--~~~~~~~~~l~~~~~-~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~k 107 (987)
..+|++|...|.|...|- .-.+.++.++-.... ....+.-.|+ | |+-+||+.. |+..--.+.....+..-..-
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wa-p-ge~~lVsas--GDsT~r~Wdvk~s~l~G~~~ 139 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWA-P-GESLLVSAS--GDSTIRPWDVKTSRLVGGRL 139 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccC-C-CceeEEEcc--CCceeeeeeeccceeeccee
Confidence 448999999999999988 222222222211100 1244555565 6 998999875 22222344433332222211
Q ss_pred CCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 108 LKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 108 lkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
+.| +.|+|+||-+.+ .-.|..|..||.|..-.+-.+
T Consensus 140 ~~GH~~SvkS~cf~~~n-----~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 140 NLGHTGSVKSECFMPTN-----PAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred ecccccccchhhhccCC-----CcceeeccCCCcEEEEEEecc
Confidence 345 589999998542 337999999999988766443
No 319
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=53.36 E-value=23 Score=24.45 Aligned_cols=27 Identities=11% Similarity=0.342 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 392 QVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 392 ~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++...|..++..|+|++|.+.|.++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 457788999999999999999998875
No 320
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=52.89 E-value=6.3 Score=39.65 Aligned_cols=31 Identities=32% Similarity=0.778 Sum_probs=25.7
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
.|.+|.+..-. . ||-.|||.|...|.+..+.
T Consensus 198 ~C~iCKkdy~s-----p--------------vvt~CGH~FC~~Cai~~y~ 228 (259)
T COG5152 198 LCGICKKDYES-----P--------------VVTECGHSFCSLCAIRKYQ 228 (259)
T ss_pred eehhchhhccc-----h--------------hhhhcchhHHHHHHHHHhc
Confidence 79999987655 2 5678999999999998764
No 321
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=52.77 E-value=1.3e+02 Score=33.85 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=63.9
Q ss_pred CceeEEEE--eCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 22 GVITCMSA--GNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 22 ~~i~~~~v--~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
.+|-|++. .|.+++-|-.+|+|+..|+...+ .+.+-.-....+.|.++-+.|+-..++++|. +|-+.++...-
T Consensus 106 SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q--si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~---~~~V~~~D~Rd 180 (609)
T KOG4227|consen 106 SNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ--SIYVANENNNRGDVYHMDQHPTDNTLIVVTR---AKLVSFIDNRD 180 (609)
T ss_pred cceEEEEEccCCeeEecCCCcceeEeeecccce--eeeeecccCcccceeecccCCCCceEEEEec---CceEEEEeccC
Confidence 45777765 56788999999999999993333 3333222222468999999999888888888 88888887543
Q ss_pred CC----ceeccCCCCceEEEEeecC
Q 001978 100 SK----PRVLSKLKGLVVNAVAWNR 120 (987)
Q Consensus 100 ~k----~k~L~klkg~~i~sVaw~~ 120 (987)
.+ +-.+.. .|...-+|.|++
T Consensus 181 ~~~~~~~~~~AN-~~~~F~t~~F~P 204 (609)
T KOG4227|consen 181 RQNPISLVLPAN-SGKNFYTAEFHP 204 (609)
T ss_pred CCCCCceeeecC-CCccceeeeecC
Confidence 32 122222 466788899994
No 322
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=52.55 E-value=1.4e+02 Score=35.92 Aligned_cols=119 Identities=8% Similarity=0.116 Sum_probs=75.0
Q ss_pred eeEEEEeCCEE-EEEe-cCCeEEEEeC-CCCCceeeE------cCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE
Q 001978 24 ITCMSAGNDVI-VLGT-SKGWLIRHDF-GAGDSYDID------LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY 94 (987)
Q Consensus 24 i~~~~v~nn~l-~~~~-~~g~l~ridl-~~~~~~~~~------l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y 94 (987)
||.+.+..+.. +-+- .+|.|-.||| .+-...+-+ +|-.......+.++-+|.+|..++++.. |+..|.
T Consensus 221 vTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt---D~sIy~ 297 (720)
T KOG0321|consen 221 VTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT---DNSIYF 297 (720)
T ss_pred eEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec---CCcEEE
Confidence 44555555543 2222 3788999999 433322211 1111111356889999999999999877 788888
Q ss_pred EecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 95 THAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 95 ~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
++-.+....++.-++|+.+.++---.. ...+...++=||.++..|.-.+..
T Consensus 298 ynm~s~s~sP~~~~sg~~~~sf~vks~--lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 298 YNMRSLSISPVAEFSGKLNSSFYVKSE--LSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred EeccccCcCchhhccCcccceeeeeee--cCCCCceEeccCCCcceeeeeecC
Confidence 777666666777778877766543211 112344688899999999877653
No 323
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=52.39 E-value=89 Score=36.60 Aligned_cols=121 Identities=12% Similarity=0.187 Sum_probs=72.0
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEe--------cCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEc-
Q 001978 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTH--------AKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT- 135 (987)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~--------~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt- 135 (987)
.-.|.-+-+||.|..++.- |--||++ .+...+|.|.---++.|+|++|.+ +...||+-+
T Consensus 167 tk~Vsal~~Dp~GaR~~sG------s~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~------Tg~~iLvvsg 234 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSG------SLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV------TGDQILVVSG 234 (641)
T ss_pred ceEEEEeeecCCCceeeec------cccceEEEEecccccccchhhhccCcccccccceeeecC------CCCeEEEEec
Confidence 4678889999999877642 3344444 233346777766789999999983 123566643
Q ss_pred -CCCcEEEEE---eccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEecCC
Q 001978 136 -DTGQLHEMA---VDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTGFG 201 (987)
Q Consensus 136 -~~G~i~e~~---i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g~~ 201 (987)
.+..||... +..--+-++|+.-++...+--..++...|... +...++-++-...|--|....
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~----~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD----NKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccC----cccceEEecCCCcEEEEecCC
Confidence 334444321 10001346888888777642234677777642 234455555566677787644
No 324
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=52.07 E-value=32 Score=30.19 Aligned_cols=55 Identities=13% Similarity=0.287 Sum_probs=37.1
Q ss_pred cccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001978 768 IEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISA 822 (987)
Q Consensus 768 i~dlL~~~p~~~~I~~~Kd~L~~~L~~y~~~i~~l~~~m~~~~~~~~~l~~~i~~ 822 (987)
+..+..++.+.|++.+++..|.++-.+|..++...-..=.+..+.-.++.+.+..
T Consensus 38 LdNL~~YI~~~Ms~edi~~II~nMr~DYEdRVDDyiIknAElsKeRReis~k~k~ 92 (95)
T PF04363_consen 38 LDNLSDYIKPDMSIEDIRAIIENMRSDYEDRVDDYIIKNAELSKERREISKKIKE 92 (95)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhHHHHhHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 4456677888999999999999999999988776543222333334444444433
No 325
>PRK04792 tolB translocation protein TolB; Provisional
Probab=52.00 E-value=3.4e+02 Score=32.04 Aligned_cols=90 Identities=13% Similarity=0.039 Sum_probs=51.1
Q ss_pred eEEEEeC--CEEEE-EecCC--eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 25 TCMSAGN--DVIVL-GTSKG--WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 25 ~~~~v~n--n~l~~-~~~~g--~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
.+.+.+. +.+++ ...+| .|+++|+...++..+.-. .......-.+|.|.+++++++..++.+.|.++...
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~-----~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRH-----RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccC-----CCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 3445543 45554 34455 499999933333332211 12234455689999998887643345566666665
Q ss_pred CCceeccCCCCceEEEEeecC
Q 001978 100 SKPRVLSKLKGLVVNAVAWNR 120 (987)
Q Consensus 100 ~k~k~L~klkg~~i~sVaw~~ 120 (987)
.+.+.|. +.+....+.+|.+
T Consensus 340 g~~~~Lt-~~g~~~~~~~~Sp 359 (448)
T PRK04792 340 GKVSRLT-FEGEQNLGGSITP 359 (448)
T ss_pred CCEEEEe-cCCCCCcCeeECC
Confidence 5666665 2444455678873
No 326
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=51.99 E-value=44 Score=40.28 Aligned_cols=52 Identities=23% Similarity=0.207 Sum_probs=43.4
Q ss_pred eehhhhccccHHHHHHHHHh-cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhc
Q 001978 690 CVHIYGMMSMHEEAVALALQ-VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIE 742 (987)
Q Consensus 690 ~v~L~~~~g~~~eAl~l~l~-~di~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~ 742 (987)
.--||.+++.|-+||.+++. +|.+.+++++.... |+..+|++-.+|+++=+.
T Consensus 245 a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~-D~~~kKQ~~ymLaR~~i~ 297 (878)
T KOG2005|consen 245 ALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCT-DPLLKKQMAYMLARHGIY 297 (878)
T ss_pred HHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCc
Confidence 44679999999999999999 89999999996654 777888888888877554
No 327
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=51.63 E-value=35 Score=26.55 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=24.5
Q ss_pred ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 111 LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 111 ~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
..|++++|+|. ..=|.+||.+|.|+.+.++.
T Consensus 12 ~~v~~~~w~P~------mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 12 SRVSCMSWCPT------MDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CcEEEEEECCC------CCEEEEEECCCeEEEEECCC
Confidence 47999999943 22688899999999988843
No 328
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=51.59 E-value=2.6e+02 Score=30.83 Aligned_cols=124 Identities=11% Similarity=0.100 Sum_probs=77.9
Q ss_pred ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC---CCCceeccCCCCceEEEEeecCCCCCCCCcc
Q 001978 53 SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK---WSKPRVLSKLKGLVVNAVAWNRQQITEASTK 129 (987)
Q Consensus 53 ~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~---~~k~k~L~klkg~~i~sVaw~~~~~~~~st~ 129 (987)
..++++|.+ +++.|..+-+.|....+++++. =+|.+-.+..+ ...+|.+..+ +-+|-+|+|+++- -
T Consensus 17 ~kd~ev~~p--P~DsIS~l~FSP~~~~~~~A~S--WD~tVR~wevq~~g~~~~ka~~~~-~~PvL~v~Wsddg------s 85 (347)
T KOG0647|consen 17 NKDYEVPNP--PEDSISALAFSPQADNLLAAGS--WDGTVRIWEVQNSGQLVPKAQQSH-DGPVLDVCWSDDG------S 85 (347)
T ss_pred ccceecCCC--cccchheeEeccccCceEEecc--cCCceEEEEEecCCcccchhhhcc-CCCeEEEEEccCC------c
Confidence 345667643 3689999999998777776653 15666444322 3344555543 4599999999431 2
Q ss_pred eEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEEC--CCeEEEEecC
Q 001978 130 EIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT--PTRLYSFTGF 200 (987)
Q Consensus 130 ~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast--~~rly~f~g~ 200 (987)
.+..|..+|.+=+..|..+. +.+| ...+ +||..+.|..-+ .+-.++|+ ++.|-.|+-+
T Consensus 86 kVf~g~~Dk~~k~wDL~S~Q-----~~~v-~~Hd--~pvkt~~wv~~~-----~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 86 KVFSGGCDKQAKLWDLASGQ-----VSQV-AAHD--APVKTCHWVPGM-----NYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred eEEeeccCCceEEEEccCCC-----eeee-eecc--cceeEEEEecCC-----CcceeEecccccceeecccC
Confidence 68889999988888887651 2333 4555 679999997421 23334444 5556657654
No 329
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=51.27 E-value=51 Score=35.93 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=38.5
Q ss_pred HHchhhHHHHHHhcCC-----ch--hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRD-----PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~-----~~--~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
+++.|+|++|+...+. |. .....+...|+.++..|+|++|+..|.+..
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677999999988753 33 246789999999999999999998876654
No 330
>PF12854 PPR_1: PPR repeat
Probab=51.02 E-value=21 Score=25.52 Aligned_cols=24 Identities=13% Similarity=0.393 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHhCC
Q 001978 537 HEIVVHHYIQQGEAKKALQMLRKP 560 (987)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~l~~~ 560 (987)
|..++.-|.+.|+.++|++++.+.
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC
Confidence 667889999999999999998754
No 331
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.87 E-value=68 Score=30.46 Aligned_cols=18 Identities=28% Similarity=0.792 Sum_probs=13.5
Q ss_pred ccccccccccccchhhhh
Q 001978 828 AVIDRDEDCGVCRRKILV 845 (987)
Q Consensus 828 ~~i~~~~~C~~C~k~L~~ 845 (987)
+-+..+..|.+|.|.=+.
T Consensus 60 aGv~ddatC~IC~KTKFA 77 (169)
T KOG3799|consen 60 AGVGDDATCGICHKTKFA 77 (169)
T ss_pred cccCcCcchhhhhhcccc
Confidence 445567899999987555
No 332
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=50.80 E-value=35 Score=33.24 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=52.7
Q ss_pred HchhhHHHHHH----hcCC-ch--hHhHHHHHHHHHHHhcCCHHHHHHHHHhhcCC---CChHHHH-----HHhcCcChH
Q 001978 372 LDMKEYAAALA----NCRD-PL--QRDQVYLVQAEAAFATKDFHRAASFYAKINYI---LSFEEIT-----LKFISVSEQ 436 (987)
Q Consensus 372 l~~~~fe~Al~----~~~~-~~--~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~---~~~E~v~-----lkFl~~~~~ 436 (987)
+..++...|-+ +.++ |. .........|..++..|+|++|...|.+.... ..+..++ .-.++.++.
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34666666655 2333 32 34566778899999999999999999887621 1222222 223455666
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHH
Q 001978 437 DALRTFLLRKLDNLAKDDKCQITMISTWATELYL 470 (987)
Q Consensus 437 ~~L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl 470 (987)
+.-...|.. ... .........+..++|+
T Consensus 102 d~Al~~L~~----~~~--~~~~~~~~~~~Gdi~~ 129 (145)
T PF09976_consen 102 DEALATLQQ----IPD--EAFKALAAELLGDIYL 129 (145)
T ss_pred HHHHHHHHh----ccC--cchHHHHHHHHHHHHH
Confidence 555444543 211 2223344455556665
No 333
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=50.45 E-value=52 Score=34.79 Aligned_cols=56 Identities=11% Similarity=0.123 Sum_probs=39.5
Q ss_pred ccCcceehhHHHHHhhcCCCceeEEEEeCCEEEEEe-cCCeEEEEeC-CCCCceeeEcCC
Q 001978 3 LMRQVFQVDVLERYAAKGRGVITCMSAGNDVIVLGT-SKGWLIRHDF-GAGDSYDIDLSA 60 (987)
Q Consensus 3 ~~~~~f~~~~~~~~~~~~~~~i~~~~v~nn~l~~~~-~~g~l~ridl-~~~~~~~~~l~~ 60 (987)
|-+-+|.|++.+-.-+..||- .|+..+ +.||+++ ..|+|++.|+ ++....+|.+|-
T Consensus 196 nr~~i~dlrk~~~~e~~~PDG-m~ID~e-G~L~Va~~ng~~V~~~dp~tGK~L~eiklPt 253 (310)
T KOG4499|consen 196 NRKVIFDLRKSQPFESLEPDG-MTIDTE-GNLYVATFNGGTVQKVDPTTGKILLEIKLPT 253 (310)
T ss_pred CcceeEEeccCCCcCCCCCCc-ceEccC-CcEEEEEecCcEEEEECCCCCcEEEEEEcCC
Confidence 456788888864444444455 667664 4555555 6689999999 777788999983
No 334
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=50.30 E-value=4e+02 Score=29.65 Aligned_cols=126 Identities=13% Similarity=0.212 Sum_probs=83.7
Q ss_pred CccCcceehhHHHHHhhcCCCceeEEEEeCCEEEEE---ecCCeEEEEeCC---CCCceeeEcCCCCCCccceeEEEeCC
Q 001978 2 DLMRQVFQVDVLERYAAKGRGVITCMSAGNDVIVLG---TSKGWLIRHDFG---AGDSYDIDLSAGRPGEQSIHKVFVDP 75 (987)
Q Consensus 2 ~~~~~~f~~~~~~~~~~~~~~~i~~~~v~nn~l~~~---~~~g~l~ridl~---~~~~~~~~l~~~~~~~~~i~~i~lDp 75 (987)
|+-+.++.+|++.. |+| .+++.-..+..+++ .+.|.|=..||. ++....|.-| ++.|..+-|.-
T Consensus 122 ~n~k~l~~~et~~N--PkG---lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH-----~s~Iacv~Ln~ 191 (346)
T KOG2111|consen 122 DNPKLLHVIETRSN--PKG---LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAH-----DSDIACVALNL 191 (346)
T ss_pred CChhheeeeecccC--CCc---eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcc-----cCceeEEEEcC
Confidence 56677777777643 455 78888777766665 477999999992 2223445555 57899999999
Q ss_pred CCCeEEEEeecCCCccEEEE-ec-CCCCceeccCCCC---ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 76 GGSHCIATIVGSGGAETFYT-HA-KWSKPRVLSKLKG---LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 76 ~G~hlli~~~~~~~g~~~Y~-~~-~~~k~k~L~klkg---~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
.|.-+.-+++ .|..-=+ +. .-.+...+. +| -.|-|+||++.. .-+-+.+++|.|....+...
T Consensus 192 ~Gt~vATaSt---kGTLIRIFdt~~g~~l~E~R--RG~d~A~iy~iaFSp~~------s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 192 QGTLVATAST---KGTLIRIFDTEDGTLLQELR--RGVDRADIYCIAFSPNS------SWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CccEEEEecc---CcEEEEEEEcCCCcEeeeee--cCCchheEEEEEeCCCc------cEEEEEcCCCeEEEEEeecC
Confidence 9987777766 6766433 22 222333343 34 489999999432 13455567799988888654
No 335
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=50.16 E-value=2.9e+02 Score=35.40 Aligned_cols=159 Identities=9% Similarity=0.144 Sum_probs=87.4
Q ss_pred EEEeCCEEEEEecCCeEEEEeC-CCCC--ce--eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC--
Q 001978 27 MSAGNDVIVLGTSKGWLIRHDF-GAGD--SY--DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW-- 99 (987)
Q Consensus 27 ~~v~nn~l~~~~~~g~l~ridl-~~~~--~~--~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~-- 99 (987)
+....+++++.++.|.+-|+++ .-.. .. ........ .++.+..++.=.++.++++.|+ .|..|++....
T Consensus 492 li~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klK-e~D~l~~~~~~~t~d~LllfTs---~Grv~~l~~~~IP 567 (800)
T TIGR01063 492 LIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMK-DDDFIEQLLVASTHDYLLFFTN---RGKVYWLKVYQIP 567 (800)
T ss_pred ccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccC-CCCeeEEEEEecCCCeEEEEeC---CCcEEEEEhhhCc
Confidence 3445678899999999999987 2111 11 11111111 2357777888788888999988 89999986411
Q ss_pred -----CCceec---cCC-CC-ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCcee
Q 001978 100 -----SKPRVL---SKL-KG-LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (987)
Q Consensus 100 -----~k~k~L---~kl-kg-~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~ 169 (987)
.+-.++ -++ .| ..|.++..++. . ....+++.|++|.+--+.+..-....+.-+..+++.+. ..+.
T Consensus 568 ~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~--~--~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~-D~lv 642 (800)
T TIGR01063 568 EASRTAKGKPIVNLLPLQPDERITAILSVKEF--D--DGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDG-DELI 642 (800)
T ss_pred CCCcCCCCcCHHHhccCCCCCeEEEEEEeccC--C--CCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCC-CEEE
Confidence 111122 112 12 23444554311 1 12368889999988877665321101111222344331 2344
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 170 GLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
++... ++...++++|+..++|.|..
T Consensus 643 ~v~~~-----~~~d~lll~Ts~Gr~~r~~v 667 (800)
T TIGR01063 643 SVRLT-----SGDDEVMLGSKNGKAVRFPE 667 (800)
T ss_pred EEEEe-----CCCCEEEEEECCCcEEEEEh
Confidence 44332 22245777788999998854
No 336
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=50.13 E-value=2.9e+02 Score=33.60 Aligned_cols=75 Identities=12% Similarity=0.012 Sum_probs=59.2
Q ss_pred HHHHHcCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCC--chhhHHhhHHHHHh-HChHHHHHHHHcCC
Q 001978 516 KLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAV--PIDLQYKFAPDLIM-LDAYETVESWMTTN 590 (987)
Q Consensus 516 ~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~--~~~li~k~~~~Ll~-~~p~~ti~~l~~~~ 590 (987)
+++.-.|.+.|+..+-+..+.-++.+.+|.....++.|-+++..-.+ ...++-|-+.|--. +.|+.+.++++..+
T Consensus 640 ~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaG 717 (1081)
T KOG1538|consen 640 DVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAG 717 (1081)
T ss_pred HHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhccc
Confidence 46666788888888888888888899999999999999999986543 23577788888764 67888888887654
No 337
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=50.11 E-value=5.3e+02 Score=31.03 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=44.3
Q ss_pred ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEEC
Q 001978 111 LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT 190 (987)
Q Consensus 111 ~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast 190 (987)
-.|.|+||++. ...+++|+.||.|..+....+ ..+..+.+ -..+-|.|.. +.-.+++++.
T Consensus 260 s~v~~ca~sp~------E~kLvlGC~DgSiiLyD~~~~------~t~~~ka~---~~P~~iaWHp-----~gai~~V~s~ 319 (545)
T PF11768_consen 260 SQVICCARSPS------EDKLVLGCEDGSIILYDTTRG------VTLLAKAE---FIPTLIAWHP-----DGAIFVVGSE 319 (545)
T ss_pred CcceEEecCcc------cceEEEEecCCeEEEEEcCCC------eeeeeeec---ccceEEEEcC-----CCcEEEEEcC
Confidence 36888899843 237999999999998876543 22322332 2357888873 2245666555
Q ss_pred CCeEEEEec
Q 001978 191 PTRLYSFTG 199 (987)
Q Consensus 191 ~~rly~f~g 199 (987)
.+-|--|+-
T Consensus 320 qGelQ~FD~ 328 (545)
T PF11768_consen 320 QGELQCFDM 328 (545)
T ss_pred CceEEEEEe
Confidence 676776753
No 338
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=50.05 E-value=6.1e+02 Score=31.72 Aligned_cols=222 Identities=13% Similarity=0.218 Sum_probs=120.0
Q ss_pred ceEEEEeecCCCCCC----CCcceEEEEcC--CCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceE
Q 001978 111 LVVNAVAWNRQQITE----ASTKEIILGTD--TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRY 184 (987)
Q Consensus 111 ~~i~sVaw~~~~~~~----~st~~iLiGt~--~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~ 184 (987)
-.|++|-|.+..... .++-..+|... .|.|.....-.. -++-.+.....||..++|... ....|.
T Consensus 56 s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~-------s~~~~l~~~~~~~qdl~W~~~--rd~Srd 126 (1062)
T KOG1912|consen 56 SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA-------SVINWLSHSNDSVQDLCWVPA--RDDSRD 126 (1062)
T ss_pred cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh-------hhhhhhcCCCcchhheeeeec--cCcchh
Confidence 589999998554321 11224555544 498887765432 111233332367999999753 234566
Q ss_pred EEEEEC-CCeEEEEecCCchHHHHhhhhcccccccccCCCcCCCcceeeeccC-CCceEEEeecCceEEEEeecCCCCCC
Q 001978 185 YVMAVT-PTRLYSFTGFGSLDTVFASYLDRAVHFMELPGEILNSELHFFIKQR-RAVHFAWLSGAGIYHGGLNFGAQRSS 262 (987)
Q Consensus 185 ~i~ast-~~rly~f~g~~~l~~lf~~~~~~~~~~~elp~~~~~s~l~~~~~~~-~~~~faW~t~~gi~~g~i~~~~~~~~ 262 (987)
++.|.+ +.-+--| ++++.+.++ +|...+. .+..++.+. .+..|.-++..|++.---+.+...+.
T Consensus 127 ~LlaIh~ss~lvLw-ntdtG~k~W-k~~ys~~------------iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~ 192 (1062)
T KOG1912|consen 127 VLLAIHGSSTLVLW-NTDTGEKFW-KYDYSHE------------ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPD 192 (1062)
T ss_pred eeEEecCCcEEEEE-EccCCceee-ccccCCc------------ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCC
Confidence 666665 5555545 223222222 2322111 111132222 26788888999988743322211100
Q ss_pred CCCCCccccccccccccccC---------CCCCCCCCcccccC-----------CceEEEEECCEEEEEecCCCceEEEE
Q 001978 263 PNGDENFVENKALLSYSKLS---------EGAEAVKPGSMAVS-----------EYHFLLLMGNKVKVVNRISEQIIEEL 322 (987)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~l~---------~~~~~~~p~si~lT-----------~~h~llL~~~~l~vvn~l~~~~v~~~ 322 (987)
.++..-.+.+. .+.++ .+..+.++-..++| ..|++++|+..|-|++..=++.+...
T Consensus 193 ~pgk~~qI~sd----~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vv 268 (1062)
T KOG1912|consen 193 VPGKEFQITSD----HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVV 268 (1062)
T ss_pred CCceeEEEecC----ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEE
Confidence 00100001110 01100 01111223222333 35888999999999999999999988
Q ss_pred EecCCCCccccceeeEeeccCCCeEEEEeCCcEEEEEcccc
Q 001978 323 QFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDE 363 (987)
Q Consensus 323 ~l~~~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e 363 (987)
+++- ++-+++.+.-|+.....|+.-.++-.-+.++.|
T Consensus 269 pier----~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 269 PIER----GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred Eecc----CCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 8852 234777777788777888888888777776666
No 339
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=49.94 E-value=4.1e+02 Score=30.75 Aligned_cols=151 Identities=13% Similarity=0.094 Sum_probs=82.9
Q ss_pred CCEEEEEecCCeEEEEeC-C-CCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC
Q 001978 31 NDVIVLGTSKGWLIRHDF-G-AGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL 108 (987)
Q Consensus 31 nn~l~~~~~~g~l~ridl-~-~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl 108 (987)
.+.++....+|.|.++|. . ++..... .+ . -...|+.+-+.|.+..+|.+.. .++.+.-+..+.-+. +|-.+
T Consensus 240 ~~lF~sv~dd~~L~iwD~R~~~~~~~~~-~~--a-h~~~vn~~~fnp~~~~ilAT~S--~D~tV~LwDlRnL~~-~lh~~ 312 (422)
T KOG0264|consen 240 EDLFGSVGDDGKLMIWDTRSNTSKPSHS-VK--A-HSAEVNCVAFNPFNEFILATGS--ADKTVALWDLRNLNK-PLHTF 312 (422)
T ss_pred hhhheeecCCCeEEEEEcCCCCCCCccc-cc--c-cCCceeEEEeCCCCCceEEecc--CCCcEEEeechhccc-Cceec
Confidence 345566678899999999 4 3332211 11 1 1478999999999988877654 267777666544322 33334
Q ss_pred CC--ceEEEEeecCCCCCCCCcceEEEE-cCCCcEEEEEeccCccccc--------eeeeeeeeCCCCCceeeEEEEeec
Q 001978 109 KG--LVVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREK--------YIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 109 kg--~~i~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~e~--------~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
.| -.|-+|.|.|... .||.- ..+|.+....+..- +.++ -...+|.=.+=.+.|..+.|..
T Consensus 313 e~H~dev~~V~WSPh~e------tvLASSg~D~rl~vWDls~i-g~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp-- 383 (422)
T KOG0264|consen 313 EGHEDEVFQVEWSPHNE------TVLASSGTDRRLNVWDLSRI-GEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP-- 383 (422)
T ss_pred cCCCcceEEEEeCCCCC------ceeEecccCCcEEEEecccc-ccccChhhhccCCcceeEEecCcccccccccCCC--
Confidence 44 3899999996532 24432 35676666555321 1111 1112222121123466666653
Q ss_pred cCCCceEEEEEECCCeEEEEec
Q 001978 178 LSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~g 199 (987)
++...+.-|+....|--|.-
T Consensus 384 --~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 384 --NEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred --CCCeEEEEecCCceEEEeec
Confidence 33334444445667776743
No 340
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=49.87 E-value=97 Score=35.25 Aligned_cols=148 Identities=9% Similarity=0.074 Sum_probs=93.5
Q ss_pred EEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceecc
Q 001978 27 MSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLS 106 (987)
Q Consensus 27 ~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~ 106 (987)
=.=..+-|..|+.+|-.-.|+...-..+-|-- .-++.|+.+-..++|..+|.... +|..=|+..+.+.++...
T Consensus 104 WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQ----aHDs~Vr~m~ws~~g~wmiSgD~---gG~iKyWqpnmnnVk~~~ 176 (464)
T KOG0284|consen 104 WTPEGRRLLTGSQSGEFTLWNGTSFNFETILQ----AHDSPVRTMKWSHNGTWMISGDK---GGMIKYWQPNMNNVKIIQ 176 (464)
T ss_pred EcCCCceeEeecccccEEEecCceeeHHHHhh----hhcccceeEEEccCCCEEEEcCC---CceEEecccchhhhHHhh
Confidence 33345677888888888888772111221211 11678999999999999988777 788999998888777766
Q ss_pred CCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEE
Q 001978 107 KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYV 186 (987)
Q Consensus 107 klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i 186 (987)
.-+.-.|+++||.+ +. ..|+-.+.+|.|-.-..-. .+.|+ .|.+-..-|.++.|.. ....++
T Consensus 177 ahh~eaIRdlafSp-nD-----skF~t~SdDg~ikiWdf~~-~kee~------vL~GHgwdVksvdWHP-----~kgLia 238 (464)
T KOG0284|consen 177 AHHAEAIRDLAFSP-ND-----SKFLTCSDDGTIKIWDFRM-PKEER------VLRGHGWDVKSVDWHP-----TKGLIA 238 (464)
T ss_pred HhhhhhhheeccCC-CC-----ceeEEecCCCeEEEEeccC-Cchhh------eeccCCCCcceeccCC-----ccceeE
Confidence 54546899999994 21 1688888889765533221 12222 2232124588888873 223555
Q ss_pred EEECCCeEEEEec
Q 001978 187 MAVTPTRLYSFTG 199 (987)
Q Consensus 187 ~ast~~rly~f~g 199 (987)
.++...-+--|+.
T Consensus 239 sgskDnlVKlWDp 251 (464)
T KOG0284|consen 239 SGSKDNLVKLWDP 251 (464)
T ss_pred EccCCceeEeecC
Confidence 5555554444543
No 341
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=49.45 E-value=2.4e+02 Score=31.72 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=71.9
Q ss_pred ceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 23 VITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 23 ~i~~~~v~--nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
.+-|++.+ -++|+-|-++.++-.||. ...+|.-+.=+ ...|..+..-|+.-.++.++- |+.+-.+....
T Consensus 237 ~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-----~~~V~~V~~~~~dpqvit~S~---D~tvrlWDl~a 308 (460)
T KOG0285|consen 237 GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-----TNPVASVMCQPTDPQVITGSH---DSTVRLWDLRA 308 (460)
T ss_pred eeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-----CCcceeEEeecCCCceEEecC---CceEEEeeecc
Confidence 47888888 667777777878888899 55544322222 467888888877666777766 67776666433
Q ss_pred CC-ceeccCCCCceEEEEeecCCCC----------------------------------CCCCcceEEEEcCCCcEEEEE
Q 001978 100 SK-PRVLSKLKGLVVNAVAWNRQQI----------------------------------TEASTKEIILGTDTGQLHEMA 144 (987)
Q Consensus 100 ~k-~k~L~klkg~~i~sVaw~~~~~----------------------------------~~~st~~iLiGt~~G~i~e~~ 144 (987)
.| ...|.- ....++|++.+|... +-.+.+-++.|..+|.|....
T Consensus 309 gkt~~tlt~-hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 309 GKTMITLTH-HKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWD 387 (460)
T ss_pred CceeEeeec-ccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEe
Confidence 32 222322 223555555552210 001345677788888888877
Q ss_pred eccC
Q 001978 145 VDEK 148 (987)
Q Consensus 145 i~~~ 148 (987)
+..+
T Consensus 388 wksg 391 (460)
T KOG0285|consen 388 WKSG 391 (460)
T ss_pred cCcC
Confidence 7654
No 342
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.77 E-value=1.7e+02 Score=31.54 Aligned_cols=58 Identities=17% Similarity=0.070 Sum_probs=37.6
Q ss_pred HchhhHHHHHHhcCC----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCChHHHHHH
Q 001978 372 LDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLK 429 (987)
Q Consensus 372 l~~~~fe~Al~~~~~----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~~~E~v~lk 429 (987)
++.|.++.|..+-+. ...-..|+..+|-.|-..|.|++|.++|......+|-..++.|
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K 124 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRK 124 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHH
Confidence 334555555544332 1122478999999999999999999999887632444444444
No 343
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=48.71 E-value=4.4e+02 Score=29.63 Aligned_cols=60 Identities=18% Similarity=0.147 Sum_probs=46.2
Q ss_pred HHHHchhhHHHHHHhcC----Cc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCChHHHHH
Q 001978 369 KVYLDMKEYAAALANCR----DP----LQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITL 428 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~----~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~~~E~v~l 428 (987)
.+|-.+|..|.|+.+=+ +| .+|......-|..+...|=|+.|-++|....+...|.+-++
T Consensus 77 nLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~Al 144 (389)
T COG2956 77 NLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGAL 144 (389)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 45777899999999844 22 47899999999999999999999999988763334444333
No 344
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=48.54 E-value=27 Score=23.82 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.2
Q ss_pred ceeEEEEeCCEEEEEecCCeEE
Q 001978 23 VITCMSAGNDVIVLGTSKGWLI 44 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~g~l~ 44 (987)
.|.|+++++++++++|+.+.|-
T Consensus 3 ~i~aia~g~~~vavaTS~~~lR 24 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLR 24 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEE
Confidence 5899999999999999997653
No 345
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=48.18 E-value=9.4 Score=40.76 Aligned_cols=34 Identities=29% Similarity=0.709 Sum_probs=27.3
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+...+|-+|.-.|.- + +.-+|||+|-.=|+..+.
T Consensus 23 Ds~lrC~IC~~~i~i-----p--------------~~TtCgHtFCslCIR~hL 56 (391)
T COG5432 23 DSMLRCRICDCRISI-----P--------------CETTCGHTFCSLCIRRHL 56 (391)
T ss_pred hhHHHhhhhhheeec-----c--------------eecccccchhHHHHHHHh
Confidence 344689999988776 2 456999999999999886
No 346
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=47.92 E-value=8.1 Score=25.50 Aligned_cols=10 Identities=40% Similarity=0.833 Sum_probs=8.8
Q ss_pred ccccchhhhh
Q 001978 836 CGVCRRKILV 845 (987)
Q Consensus 836 C~~C~k~L~~ 845 (987)
|..||..|..
T Consensus 1 C~sC~~~i~~ 10 (24)
T PF07754_consen 1 CTSCGRPIAP 10 (24)
T ss_pred CccCCCcccC
Confidence 7889999888
No 347
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=47.07 E-value=51 Score=36.00 Aligned_cols=117 Identities=16% Similarity=0.244 Sum_probs=63.6
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEE-EEecCCC--CceeccCCCCc--------------eEEEEeecCCCCCCCC
Q 001978 65 EQSIHKVFVDPGGSHCIATIVGSGGAETF-YTHAKWS--KPRVLSKLKGL--------------VVNAVAWNRQQITEAS 127 (987)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~-Y~~~~~~--k~k~L~klkg~--------------~i~sVaw~~~~~~~~s 127 (987)
.+.|+.+-.|.+|.++...-. +|-+- |-..++. .-|.++.+.++ .|..+-|.++. .
T Consensus 26 ad~ItaVefd~tg~YlatGDk---gGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t----~ 98 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDK---GGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT----G 98 (460)
T ss_pred cceeeEEEeccccceEeecCC---CceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC----C
Confidence 368899999999987654332 24332 2211111 02233333332 35688998543 3
Q ss_pred cceEEEEcCCCcEEEEEeccCccccceeeee--------eeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEE
Q 001978 128 TKEIILGTDTGQLHEMAVDEKDKREKYIKLL--------FELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLY 195 (987)
Q Consensus 128 t~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v--------~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly 195 (987)
...||+.|++-.|=.-.+- +|.+|.| +..|. .||+++.+--..|. .+...-++|.+|+|+|
T Consensus 99 r~hFLlstNdktiKlWKiy-----eknlk~va~nnls~~~~~~~-~g~~~s~~~l~lpr-ls~hd~iiaa~p~rvy 167 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIY-----EKNLKVVAENNLSDSFHSPM-GGPLTSTKELLLPR-LSEHDEIIAAKPCRVY 167 (460)
T ss_pred cceEEEecCCceeeeeeee-----cccchhhhcccccccccccc-CCCcCCHHHhhccc-ccccceEEEeccceec
Confidence 3489999988654333221 1222222 22332 36677665444442 2335678889999999
No 348
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=46.73 E-value=6.9e+02 Score=32.68 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=38.1
Q ss_pred ceeEEEEe----CCEEEEEecCCeEEEEeC-C--CCCceeeEcCCCCCCccceeEEEeCCCC---CeEEEEeecCCCccE
Q 001978 23 VITCMSAG----NDVIVLGTSKGWLIRHDF-G--AGDSYDIDLSAGRPGEQSIHKVFVDPGG---SHCIATIVGSGGAET 92 (987)
Q Consensus 23 ~i~~~~v~----nn~l~~~~~~g~l~ridl-~--~~~~~~~~l~~~~~~~~~i~~i~lDp~G---~hlli~~~~~~~g~~ 92 (987)
.+..+.+. +..++++|.+|.+-|..+ . ...-...-+... . ++.+-.+.+-..+ .++++.|. +|..
T Consensus 609 Iv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~~r~~~~aikL~-e-~DeLV~v~~~~~~~~~~~Iil~Tk---~G~a 683 (957)
T PRK13979 609 IIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVTNYTKLMALKLK-K-GEKLIKVKLVDRTREEKFIKIKTK---KGLS 683 (957)
T ss_pred EEEEEEeccCCCCCEEEEEECCCeEEEEehhhccccccceEEEEcC-C-CCEEEEEEEcCCCCCCCEEEEEeC---CCcE
Confidence 34455552 236999999999999987 2 111111222222 2 3455555553332 46777777 6755
Q ss_pred EEEe
Q 001978 93 FYTH 96 (987)
Q Consensus 93 ~Y~~ 96 (987)
.-+.
T Consensus 684 irF~ 687 (957)
T PRK13979 684 FTVE 687 (957)
T ss_pred EEEE
Confidence 4333
No 349
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=46.55 E-value=3e+02 Score=31.86 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=11.9
Q ss_pred HHHHHchhhHHHHHHhc
Q 001978 368 WKVYLDMKEYAAALANC 384 (987)
Q Consensus 368 W~~ll~~~~fe~Al~~~ 384 (987)
=..|+..|++++|+++.
T Consensus 194 ~~~~~~~gdw~~a~~~l 210 (398)
T PRK10747 194 EQAYIRTGAWSSLLDIL 210 (398)
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 35577778888888553
No 350
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=46.35 E-value=6.2e+02 Score=30.74 Aligned_cols=145 Identities=13% Similarity=0.059 Sum_probs=92.0
Q ss_pred CceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEE-eecCCCccEEEEec
Q 001978 22 GVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT-IVGSGGAETFYTHA 97 (987)
Q Consensus 22 ~~i~~~~v~--nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~-~~~~~~g~~~Y~~~ 97 (987)
+.+.+++.. .+.++-|..+.++..||. .+.-+.-+..+ .+.|..+..++ ..+++ +- +-.+.-++.
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh-----~stv~~~~~~~---~~~~sgs~---D~tVkVW~v 318 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGH-----TSSVRCLTIDP---FLLVSGSR---DNTVKVWDV 318 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCC-----CceEEEEEccC---ceEeeccC---CceEEEEec
Confidence 457888888 999999999999999998 43333333333 46777777764 22333 22 566667777
Q ss_pred CCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 98 ~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
...+.-.+..-.+-.|.+|..+. ..++-|+.+|.|--..+. ..+.+..+.+-.+.|+++.+..
T Consensus 319 ~n~~~l~l~~~h~~~V~~v~~~~--------~~lvsgs~d~~v~VW~~~-------~~~cl~sl~gH~~~V~sl~~~~-- 381 (537)
T KOG0274|consen 319 TNGACLNLLRGHTGPVNCVQLDE--------PLLVSGSYDGTVKVWDPR-------TGKCLKSLSGHTGRVYSLIVDS-- 381 (537)
T ss_pred cCcceEEEeccccccEEEEEecC--------CEEEEEecCceEEEEEhh-------hceeeeeecCCcceEEEEEecC--
Confidence 65554333332456899999982 268899999965554443 2455555554346788887642
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 001978 178 LSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (987)
+ ..++=.++.+.+-.|+
T Consensus 382 ---~-~~~~Sgs~D~~IkvWd 398 (537)
T KOG0274|consen 382 ---E-NRLLSGSLDTTIKVWD 398 (537)
T ss_pred ---c-ceEEeeeeccceEeec
Confidence 1 3445445555555564
No 351
>PF13934 ELYS: Nuclear pore complex assembly
Probab=46.19 E-value=49 Score=35.17 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=29.7
Q ss_pred hhhHHHHHHchhhHHHHHHhcCCchhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 364 GRDMWKVYLDMKEYAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 364 ~~~~W~~ll~~~~fe~Al~~~~~~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
-+.-| +|++++|++|+++.-+|.....-..+-...|+.+|+...|.+++.-..
T Consensus 83 ~~g~W--~LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~ 135 (226)
T PF13934_consen 83 IQGFW--LLDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVG 135 (226)
T ss_pred HHHHH--HhChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcC
Confidence 35567 777777777777765543222222233444555677766665555443
No 352
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=45.98 E-value=10 Score=30.42 Aligned_cols=11 Identities=27% Similarity=0.606 Sum_probs=6.6
Q ss_pred cccccchhhhh
Q 001978 835 DCGVCRRKILV 845 (987)
Q Consensus 835 ~C~~C~k~L~~ 845 (987)
.|++|+++|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 99999999987
No 353
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=45.73 E-value=12 Score=40.93 Aligned_cols=35 Identities=23% Similarity=0.597 Sum_probs=26.8
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (987)
..-+|.+|..-+-- -++-||||.|-.=|+..+...
T Consensus 22 ~lLRC~IC~eyf~i-------------------p~itpCsHtfCSlCIR~~L~~ 56 (442)
T KOG0287|consen 22 DLLRCGICFEYFNI-------------------PMITPCSHTFCSLCIRKFLSY 56 (442)
T ss_pred HHHHHhHHHHHhcC-------------------ceeccccchHHHHHHHHHhcc
Confidence 34589999876554 256689999999999988643
No 354
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=45.25 E-value=5.8e+02 Score=30.05 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=45.7
Q ss_pred cCCCceeEEEEeCCEEEEEecCCeEEEEeC-CCCC-c-------ee--e-EcCCCCCCccceeEEEeCCCCCeEEEEeec
Q 001978 19 KGRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGD-S-------YD--I-DLSAGRPGEQSIHKVFVDPGGSHCIATIVG 86 (987)
Q Consensus 19 ~~~~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~-~-------~~--~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~ 86 (987)
+++-.++.|+.+.|++++.+++|.|+-++- .-.+ . ++ + ..|.... +..| +=+++.+.|+|++++
T Consensus 173 ~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i--~qla~G~dh~i~lt~- 248 (476)
T COG5184 173 KSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAI--VQLAAGADHLIALTN- 248 (476)
T ss_pred cCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chhe--eeeccCCceEEEEec-
Confidence 344468999999999999999999998854 1111 1 11 1 1222111 1122 234788999999999
Q ss_pred CCCccEEEE
Q 001978 87 SGGAETFYT 95 (987)
Q Consensus 87 ~~~g~~~Y~ 95 (987)
.|.+|=+
T Consensus 249 --~G~vy~~ 255 (476)
T COG5184 249 --EGKVYGW 255 (476)
T ss_pred --CCcEEEe
Confidence 8888733
No 355
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=44.94 E-value=18 Score=39.24 Aligned_cols=37 Identities=22% Similarity=0.666 Sum_probs=28.9
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhc
Q 001978 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQC 886 (987)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~ 886 (987)
.|++|..-+..+ . ....+.+|||.-|.+|+.......
T Consensus 160 ncPic~e~l~~s----~-----------~~~~~~~CgH~~h~~cf~e~~~~~ 196 (276)
T KOG1940|consen 160 NCPICKEYLFLS----F-----------EDAGVLKCGHYMHSRCFEEMICEG 196 (276)
T ss_pred CCchhHHHhccc----c-----------ccCCccCcccchHHHHHHHHhccC
Confidence 399999888773 1 156678999999999999886544
No 356
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=44.92 E-value=5.9e+02 Score=31.29 Aligned_cols=156 Identities=10% Similarity=0.087 Sum_probs=88.9
Q ss_pred eeEEEEeCC--EEEEEecC-----CeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 001978 24 ITCMSAGND--VIVLGTSK-----GWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 24 i~~~~v~nn--~l~~~~~~-----g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (987)
|.|++++++ +++=+..+ -.|..++- +=.++.+++-| +-.|++|-..|.|++|+..+. |-..--+
T Consensus 528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H-----sLTVT~l~FSpdg~~LLsvsR---DRt~sl~ 599 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH-----SLTVTRLAFSPDGRYLLSVSR---DRTVSLY 599 (764)
T ss_pred EEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc-----ceEEEEEEECCCCcEEEEeec---CceEEee
Confidence 899999954 54444433 22555555 44445556555 468999999999999999887 5444222
Q ss_pred ecCCC-C----ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceee
Q 001978 96 HAKWS-K----PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMG 170 (987)
Q Consensus 96 ~~~~~-k----~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~g 170 (987)
..+.. + +..+ |-....|=+..|+|. ..-|..++.|-.+....+... .++|+..+-.++- ..+||.
T Consensus 600 ~~~~~~~~e~~fa~~-k~HtRIIWdcsW~pd------e~~FaTaSRDK~VkVW~~~~~--~d~~i~~~a~~~~-~~aVTA 669 (764)
T KOG1063|consen 600 EVQEDIKDEFRFACL-KAHTRIIWDCSWSPD------EKYFATASRDKKVKVWEEPDL--RDKYISRFACLKF-SLAVTA 669 (764)
T ss_pred eeecccchhhhhccc-cccceEEEEcccCcc------cceeEEecCCceEEEEeccCc--hhhhhhhhchhcc-CCceee
Confidence 22111 1 1111 112235555666632 223888888877766655432 2456665322221 267999
Q ss_pred EEEEeeccCCCceEEEEEEC-CCeEEEEe
Q 001978 171 LQMETASLSNGTRYYVMAVT-PTRLYSFT 198 (987)
Q Consensus 171 i~~~~~~~~~~~~~~i~ast-~~rly~f~ 198 (987)
|.+..+.. ++.+.+|.|-. ...|+-|.
T Consensus 670 v~~~~~~~-~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 670 VAYLPVDH-NEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred EEeecccc-ccccceEEEEecccEEEEEe
Confidence 99876543 33444444443 67777664
No 357
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=44.63 E-value=5.6e+02 Score=29.71 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=56.2
Q ss_pred HHHHHHHhCCC----CchhhHHhhHHHHHh-HChHHHHHHHHcCCCCCCCcc---hhhhhhcCCCCCCCCChHHHHHHHH
Q 001978 551 KKALQMLRKPA----VPIDLQYKFAPDLIM-LDAYETVESWMTTNNLNPRKL---IPAMMRYSSEPHAKNETHEVIKYLE 622 (987)
Q Consensus 551 ~~AL~~l~~~~----~~~~li~k~~~~Ll~-~~p~~ti~~l~~~~~ld~~~l---ip~L~~~~~~~~~~~~~~~~~~YLe 622 (987)
+...+.+...+ +..++.+-++..++. ..++++.+.+-+.-+..|+.- ++.+..+... . +.+...+...++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l-~-~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL-K-PEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc-C-CCChHHHHHHHH
Confidence 34444555554 235777888887775 455666666544322222211 1222222211 0 123455666776
Q ss_pred HHHhhcCCCCh--hHHHHHHHHhhcCCChHHHHHHHHH
Q 001978 623 FCVHRLHNEDP--GVHNLLLSLYAKQEDDSALLRFLQC 658 (987)
Q Consensus 623 ~li~~~~~~~~--~ihn~ll~Ly~~~~~~~kLl~fL~~ 658 (987)
......+ .++ .++..|-.+|.+.++-++-.++++.
T Consensus 324 ~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 324 KQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 6655433 456 7777777777776656677778773
No 358
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=44.50 E-value=2.7e+02 Score=32.97 Aligned_cols=140 Identities=13% Similarity=0.180 Sum_probs=80.2
Q ss_pred EEeCCEEEEEecCCeEEEEeCCCCCce-eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCcee-c
Q 001978 28 SAGNDVIVLGTSKGWLIRHDFGAGDSY-DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRV-L 105 (987)
Q Consensus 28 ~v~nn~l~~~~~~g~l~ridl~~~~~~-~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~-L 105 (987)
.-+++.+++.+++|++..++-. .+|+ .++-+. +.|..---.|.|.-|+.+.. ||..-.+..+- -.|. |
T Consensus 72 g~~~d~~~i~s~DGkf~il~k~-~rVE~sv~AH~-----~A~~~gRW~~dGtgLlt~GE---DG~iKiWSrsG-MLRStl 141 (737)
T KOG1524|consen 72 GKGSDTLLICSNDGRFVILNKS-ARVERSISAHA-----AAISSGRWSPDGAGLLTAGE---DGVIKIWSRSG-MLRSTV 141 (737)
T ss_pred CCCcceEEEEcCCceEEEeccc-chhhhhhhhhh-----hhhhhcccCCCCceeeeecC---CceEEEEeccc-hHHHHH
Confidence 4467788999999999888762 1222 233332 12222223577777777666 78775554321 1111 2
Q ss_pred cCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeee-eeeCCCCCceeeEEEEeeccCCCceE
Q 001978 106 SKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLL-FELNELPEAFMGLQMETASLSNGTRY 184 (987)
Q Consensus 106 ~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v-~~l~~~~~~I~gi~~~~~~~~~~~~~ 184 (987)
. -.+-.|.||+|.+.. ..|| =|.-|+++..-+..+ .|.+ +.-.+ |-|..+.|...+ .
T Consensus 142 ~-Q~~~~v~c~~W~p~S------~~vl-~c~g~h~~IKpL~~n------~k~i~WkAHD--GiiL~~~W~~~s-----~- 199 (737)
T KOG1524|consen 142 V-QNEESIRCARWAPNS------NSIV-FCQGGHISIKPLAAN------SKIIRWRAHD--GLVLSLSWSTQS-----N- 199 (737)
T ss_pred h-hcCceeEEEEECCCC------CceE-EecCCeEEEeecccc------cceeEEeccC--cEEEEeecCccc-----c-
Confidence 2 246799999999431 1344 477788888777654 2332 44454 568888886421 1
Q ss_pred EEEEEC--CCeEEEEecC
Q 001978 185 YVMAVT--PTRLYSFTGF 200 (987)
Q Consensus 185 ~i~ast--~~rly~f~g~ 200 (987)
+++|. +.|.--|++.
T Consensus 200 -lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 200 -IIASGGEDFRFKIWDAQ 216 (737)
T ss_pred -ceeecCCceeEEeeccc
Confidence 22233 5566666654
No 359
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=44.33 E-value=5.4e+02 Score=31.79 Aligned_cols=167 Identities=11% Similarity=0.105 Sum_probs=97.8
Q ss_pred cceehhHHHHHhhcCCCceeEEEEeCC--EEEEEecCCeEEEEeCCCCCceeeEcCCCC-CCccceeEEEeCCCCCeEEE
Q 001978 6 QVFQVDVLERYAAKGRGVITCMSAGND--VIVLGTSKGWLIRHDFGAGDSYDIDLSAGR-PGEQSIHKVFVDPGGSHCIA 82 (987)
Q Consensus 6 ~~f~~~~~~~~~~~~~~~i~~~~v~nn--~l~~~~~~g~l~ridl~~~~~~~~~l~~~~-~~~~~i~~i~lDp~G~hlli 82 (987)
..|+++.-..++-.|- . ++++.| +|+-+.. ..|..+|+.+..+. +|... .....|+.+-++|.+.+++.
T Consensus 8 k~ya~ers~epiYtGG-~---~~~s~nG~~L~t~~~-d~Vi~idv~t~~~~---l~s~~~ed~d~ita~~l~~d~~~L~~ 79 (775)
T KOG0319|consen 8 KSYALERSLEPIYTGG-P---VAWSSNGQHLYTACG-DRVIIIDVATGSIA---LPSGSNEDEDEITALALTPDEEVLVT 79 (775)
T ss_pred hhhhhhhcccceecCC-c---eeECCCCCEEEEecC-ceEEEEEccCCcee---cccCCccchhhhheeeecCCccEEEE
Confidence 3567777555555452 2 455544 4443333 36888899555443 44332 23478999999999999999
Q ss_pred EeecCCCccEEEEecCCCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeee
Q 001978 83 TIVGSGGAETFYTHAKWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL 161 (987)
Q Consensus 83 ~~~~~~~g~~~Y~~~~~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l 161 (987)
... ++..=-++...-+. |.++-..--+|--+++++. .+-.-.|..+|.+---.+... |+.. .+
T Consensus 80 a~r---s~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~------g~LlAtggaD~~v~VWdi~~~-----~~th--~f 143 (775)
T KOG0319|consen 80 ASR---SQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPT------GTLLATGGADGRVKVWDIKNG-----YCTH--SF 143 (775)
T ss_pred eec---cceEEEEEcccchHhHhHhhccCCCeEEEEEcCC------CceEEeccccceEEEEEeeCC-----EEEE--Ee
Confidence 888 45443444433332 2221112247778888832 134556778888777666543 4444 45
Q ss_pred CCCCCceeeEEEEeeccCCCceEEEEEE-CCCeEEEEecC
Q 001978 162 NELPEAFMGLQMETASLSNGTRYYVMAV-TPTRLYSFTGF 200 (987)
Q Consensus 162 ~~~~~~I~gi~~~~~~~~~~~~~~i~as-t~~rly~f~g~ 200 (987)
.+-||+|..+.+..- ..++++... +...++-|.+.
T Consensus 144 kG~gGvVssl~F~~~----~~~~lL~sg~~D~~v~vwnl~ 179 (775)
T KOG0319|consen 144 KGHGGVVSSLLFHPH----WNRWLLASGATDGTVRVWNLN 179 (775)
T ss_pred cCCCceEEEEEeCCc----cchhheeecCCCceEEEEEcc
Confidence 555688999998642 223333322 46777777664
No 360
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=43.85 E-value=1.3e+02 Score=33.41 Aligned_cols=83 Identities=13% Similarity=0.097 Sum_probs=54.9
Q ss_pred EEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE--EEEecCCCCcee
Q 001978 28 SAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET--FYTHAKWSKPRV 104 (987)
Q Consensus 28 ~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~--~Y~~~~~~k~k~ 104 (987)
|-+--+||.+...|.|..++| +|+=..+|+-- ...+..+.-.|.|+|++.++. .+. -.+.....+...
T Consensus 58 ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg-----~agls~~~WSPdgrhiL~tse----F~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 58 ADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG-----QAGLSSISWSPDGRHILLTSE----FDLRITVWSLNTQKGYL 128 (447)
T ss_pred ccceeeeeeeeccceEEEEEeecceeEEEeccC-----CCcceeeeECCCcceEeeeec----ceeEEEEEEeccceeEE
Confidence 344558899999999999999 88876666532 356777888999999998876 332 122333333333
Q ss_pred ccCCCCceEEEEeecC
Q 001978 105 LSKLKGLVVNAVAWNR 120 (987)
Q Consensus 105 L~klkg~~i~sVaw~~ 120 (987)
++--|- .++-+++++
T Consensus 129 ~~~pK~-~~kg~~f~~ 143 (447)
T KOG4497|consen 129 LPHPKT-NVKGYAFHP 143 (447)
T ss_pred eccccc-CceeEEECC
Confidence 333232 347778874
No 361
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=43.74 E-value=3.9e+02 Score=27.62 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=32.5
Q ss_pred HHHchhhHHHHHHhcCC-----c--hhHhHHHHHHHHHHHhcCCHHHHHHHHHh
Q 001978 370 VYLDMKEYAAALANCRD-----P--LQRDQVYLVQAEAAFATKDFHRAASFYAK 416 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~--~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~ 416 (987)
.++++|+|++|++..+. | ..........|+.++..|+|.+|+..|.+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~ 67 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYER 67 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36778888888888652 2 23556777888888888888888766544
No 362
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=43.50 E-value=6.7e+02 Score=32.26 Aligned_cols=50 Identities=14% Similarity=0.261 Sum_probs=40.8
Q ss_pred HHHHchhhHHHHHHhcCCch-------hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDPL-------QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~~-------~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..|+.+|+|+.++.++.+.. -+..-....|..+-.+|+|++|.++|.++.
T Consensus 278 n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 278 NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 45888999999999987422 234457788999999999999999999886
No 363
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=43.47 E-value=2.2e+02 Score=34.10 Aligned_cols=152 Identities=16% Similarity=0.136 Sum_probs=76.7
Q ss_pred eCCEEEEEecCCeEEEEeC-CCCC---ceeeE--cCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce
Q 001978 30 GNDVIVLGTSKGWLIRHDF-GAGD---SYDID--LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR 103 (987)
Q Consensus 30 ~nn~l~~~~~~g~l~ridl-~~~~---~~~~~--l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k 103 (987)
.++.++++..+|.||.+.+ ..+. +..+. .+. .-.=.+++..+.++++.+. .|+..++.....+++
T Consensus 221 ~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~------~s~l~~l~~g~d~lf~gs~---~gds~l~~~~~~~l~ 291 (504)
T PF10433_consen 221 DGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSI------ASSLTYLKNGGDYLFVGSE---FGDSQLLQISLSNLE 291 (504)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-------ESEEEEESTT--EEEEEES---SS-EEEEEEESESEE
T ss_pred CCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCCh------hheEEEEcCCCEEEEEEEe---cCCcEEEEEeCCCcE
Confidence 3568999999999999988 3221 12111 111 1122355555789999988 566555554455667
Q ss_pred eccCCCC-ceEEEEeecCCCCCCCC----cceEEEEc---CCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 104 VLSKLKG-LVVNAVAWNRQQITEAS----TKEIILGT---DTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 104 ~L~klkg-~~i~sVaw~~~~~~~~s----t~~iLiGt---~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
.+..+.| -+|..++.-+....... ..+++..+ ++|.|-+..=.-+ .++.......++ + +++++..+
T Consensus 292 ~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~--~~~~~~~~~~l~---~-v~~iW~l~ 365 (504)
T PF10433_consen 292 VLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIG--IEGLELASSELP---G-VTGIWTLK 365 (504)
T ss_dssp EEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBE--EE--EEEEEEES---T-EEEEEEE-
T ss_pred EEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCC--ceeeeeeccCCC---C-ceEEEEee
Confidence 7766666 37777777533211111 11566543 4688877643221 110011112333 4 88888765
Q ss_pred eccCCCceEEEEEEC--CCeEEEEe
Q 001978 176 ASLSNGTRYYVMAVT--PTRLYSFT 198 (987)
Q Consensus 176 ~~~~~~~~~~i~ast--~~rly~f~ 198 (987)
..... ..++++ |. .++++++.
T Consensus 366 ~~~~~-~~~lv~-S~~~~T~vl~~~ 388 (504)
T PF10433_consen 366 LSSSD-HSYLVL-SFPNETRVLQIS 388 (504)
T ss_dssp SSSSS-BSEEEE-EESSEEEEEEES
T ss_pred ecCCC-ceEEEE-EcCCceEEEEEe
Confidence 33212 345555 54 56788774
No 364
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.44 E-value=3.4e+02 Score=35.79 Aligned_cols=95 Identities=19% Similarity=0.286 Sum_probs=57.1
Q ss_pred EecCCeEEEEeC-CCCCceeeEcCCCCCCccce---------eEEEeCCCCCeEEEEeecCCCccEEEEecCCC------
Q 001978 37 GTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSI---------HKVFVDPGGSHCIATIVGSGGAETFYTHAKWS------ 100 (987)
Q Consensus 37 ~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i---------~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~------ 100 (987)
.+-++.|+.|+. +.++...|+=- ...| .++|+ |.=+||+|-++ .-+.+-+.-...
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~-----shtIl~V~LvkPkpgvFv-~~IqhlLvvaT---~~ei~ilgV~~~~~~~~~ 165 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGL-----SHTILKVGLVKPKPGVFV-PEIQHLLVVAT---PVEIVILGVSFDEFTGEL 165 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccch-----hhhheeeeeecCCCCcch-hhhheeEEecc---cceEEEEEEEeccccCcc
Confidence 455669999999 65555444311 1122 23555 55678777766 455554331110
Q ss_pred ----CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 101 ----KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 101 ----k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
.--.++ ..|..|.||+-. .+|+|.+|+.+|.|||..-...
T Consensus 166 ~~f~~~~~i~-~dg~~V~~I~~t-------~nGRIF~~G~dg~lyEl~Yq~~ 209 (1311)
T KOG1900|consen 166 SIFNTSFKIS-VDGVSVNCITYT-------ENGRIFFAGRDGNLYELVYQAE 209 (1311)
T ss_pred cccccceeee-cCCceEEEEEec-------cCCcEEEeecCCCEEEEEEecc
Confidence 011222 358888888832 4689999999999999866543
No 365
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=43.33 E-value=35 Score=24.50 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 395 LVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 395 ~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
...|..+...|+|++|+++|.+..
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456888999999999999998843
No 366
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=43.19 E-value=3.5e+02 Score=30.50 Aligned_cols=110 Identities=8% Similarity=-0.017 Sum_probs=75.8
Q ss_pred eeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 001978 24 ITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (987)
Q Consensus 24 i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (987)
+..++|++. .|+-+...+.|-.||| ...-+.++.=+. +.|..+-+.|+-.-++-+.. |...-.+.-...
T Consensus 196 vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHl-----S~V~~L~lhPTldvl~t~gr---Dst~RvWDiRtr 267 (460)
T KOG0285|consen 196 VRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHL-----SGVYCLDLHPTLDVLVTGGR---DSTIRVWDIRTR 267 (460)
T ss_pred eeeeeecccCceEEEecCCCeeEEEechhhhhHHHhcccc-----ceeEEEeccccceeEEecCC---cceEEEeeeccc
Confidence 456888887 5667778899999999 555456665553 46889999999987776665 444445554333
Q ss_pred -CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 101 -KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 101 -k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
.+..|+- ....|.+|..++. ...|+-|+-++.|-.-.+-.+
T Consensus 268 ~~V~~l~G-H~~~V~~V~~~~~------dpqvit~S~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 268 ASVHVLSG-HTNPVASVMCQPT------DPQVITGSHDSTVRLWDLRAG 309 (460)
T ss_pred ceEEEecC-CCCcceeEEeecC------CCceEEecCCceEEEeeeccC
Confidence 3445542 2348999999832 237999999998877666544
No 367
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=43.17 E-value=1.9e+02 Score=35.99 Aligned_cols=112 Identities=17% Similarity=0.270 Sum_probs=66.1
Q ss_pred HHHHHhhcCCCceeEEEEeCCEEEEEe--cCCeEEEE-eCC-CCCcee---eEcCCCCCCccceeEEEeCCCCCeEEEEe
Q 001978 12 VLERYAAKGRGVITCMSAGNDVIVLGT--SKGWLIRH-DFG-AGDSYD---IDLSAGRPGEQSIHKVFVDPGGSHCIATI 84 (987)
Q Consensus 12 ~~~~~~~~~~~~i~~~~v~nn~l~~~~--~~g~l~ri-dl~-~~~~~~---~~l~~~~~~~~~i~~i~lDp~G~hlli~~ 84 (987)
++++.++ ++|.+.+.|-.|+|. ..|+|+.| |+. -+.... +.=+ ...|..+-..++|..++...
T Consensus 201 ~~~Htf~-----~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH-----~~~V~~L~fS~~G~~LlSGG 270 (792)
T KOG1963|consen 201 TVHHTFN-----ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH-----HDEVNSLSFSSDGAYLLSGG 270 (792)
T ss_pred hhhhccc-----ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec-----ccccceeEEecCCceEeecc
Confidence 3455543 799999888776665 66999998 553 222222 2222 24566666677777776433
Q ss_pred ecCCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEE
Q 001978 85 VGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (987)
Q Consensus 85 ~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (987)
. -|..--+.....+.+.|+++ |-.|..+.|.++. ++-..+++ |..|...
T Consensus 271 ~---E~VLv~Wq~~T~~kqfLPRL-gs~I~~i~vS~ds----~~~sl~~~--DNqI~li 319 (792)
T KOG1963|consen 271 R---EGVLVLWQLETGKKQFLPRL-GSPILHIVVSPDS----DLYSLVLE--DNQIHLI 319 (792)
T ss_pred c---ceEEEEEeecCCCccccccc-CCeeEEEEEcCCC----CeEEEEec--CceEEEE
Confidence 2 12222233455567889997 7799999999442 33344444 5445443
No 368
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=43.13 E-value=8e+02 Score=31.11 Aligned_cols=159 Identities=10% Similarity=0.100 Sum_probs=86.3
Q ss_pred EEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC------
Q 001978 26 CMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK------ 98 (987)
Q Consensus 26 ~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~------ 98 (987)
.+...+++++++|.+|.|-|..+ .-......-+... .++.+..++.-.+..++++-|+ .|..|.+...
T Consensus 492 dli~~E~~lV~lTk~G~IKrt~l~~f~~~r~~ai~Lk--e~Delv~v~~~~~~d~IllfT~---~Gkv~r~~~~eIp~~g 566 (738)
T TIGR01061 492 ELIENEDYYVLITKAGYIKRTSNRSFASSKYTDFGSK--DDDILFAQTIANTTDQILIFTS---LGNIINIPVHKLADIR 566 (738)
T ss_pred hcccccceEEEEccCCEEEEeehhhhhhhcccccCCC--CCCEEEEEEEecCCCEEEEEeC---CCcEEEEEHHHCcCCC
Confidence 34556789999999999999988 2221111111111 2356667777666777888888 7988776531
Q ss_pred -CCCce---eccCC-CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCc--cccceeeeeeeeCCCCCceeeE
Q 001978 99 -WSKPR---VLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKD--KREKYIKLLFELNELPEAFMGL 171 (987)
Q Consensus 99 -~~k~k---~L~kl-kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~--~~e~~~k~v~~l~~~~~~I~gi 171 (987)
..+-. .+-+| .|=.|.++...++.. + ....+++.|++|.+-.+.+..-. +.-+.. .++.+.+. ..+-++
T Consensus 567 r~a~Gv~Ivk~i~L~~~D~Iv~~~~v~~~~-~-~~~~ll~vT~~G~~KRt~l~e~~~~r~~kGv-~~ikLk~~-d~lV~a 642 (738)
T TIGR01061 567 WKDLGEHLSNKITFDENETIVFVGTMNEFD-V-DQPILVLASKLGMVKRIELTELNIKRNSKAT-LCIKLKDK-DHLISA 642 (738)
T ss_pred CCCCCcChhhcccCCCCCeEEEEEEecccc-C-CCcEEEEEecCCeEEEeEHHHhccccCCCce-EEEeccCC-CcEEEE
Confidence 11211 11123 233455554432210 0 11259999999988887764211 001112 23456543 234333
Q ss_pred EEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 172 QMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
... .+ ...++++|.......|.
T Consensus 643 ~~v----~~-~d~IlliT~~G~~iRf~ 664 (738)
T TIGR01061 643 FLQ----QK-DKLICLVSDLGYALVFH 664 (738)
T ss_pred EEe----CC-CCEEEEEECCCeEEEEE
Confidence 332 12 24577777788887774
No 369
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=43.10 E-value=2.3e+02 Score=30.70 Aligned_cols=103 Identities=14% Similarity=0.167 Sum_probs=68.6
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCc--eEEEEeecCCCCCCCCcceEEEEcCCCcEEE
Q 001978 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHE 142 (987)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e 142 (987)
.-+|++|--...|..|+.|..- ....++|.+... .|..++|| .|=|+.-+. +|..++.|..+-.+-.
T Consensus 10 ERplTqiKyN~eGDLlFscaKD-~~~~vw~s~nGe----rlGty~GHtGavW~~Did~------~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKD-STPTVWYSLNGE----RLGTYDGHTGAVWCCDIDW------DSKHLITGSADQTAKL 78 (327)
T ss_pred ccccceEEecCCCcEEEEecCC-CCceEEEecCCc----eeeeecCCCceEEEEEecC------CcceeeeccccceeEE
Confidence 3578999999999999999871 134667775543 56667776 455555552 3558999998876666
Q ss_pred EEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCC
Q 001978 143 MAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPT 192 (987)
Q Consensus 143 ~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~ 192 (987)
-.++.+ |+++.++- +.||.++.+.. + +-+++++|..
T Consensus 79 WDv~tG-------k~la~~k~-~~~Vk~~~F~~----~--gn~~l~~tD~ 114 (327)
T KOG0643|consen 79 WDVETG-------KQLATWKT-NSPVKRVDFSF----G--GNLILASTDK 114 (327)
T ss_pred EEcCCC-------cEEEEeec-CCeeEEEeecc----C--CcEEEEEehh
Confidence 555554 66666654 47899999864 1 2345556654
No 370
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=42.84 E-value=1.7e+02 Score=32.06 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=18.7
Q ss_pred hHHHHHHHHHhcccHHHHHHHHhC
Q 001978 536 QHEIVVHHYIQQGEAKKALQMLRK 559 (987)
Q Consensus 536 dy~~ll~~yi~~~~~~~AL~~l~~ 559 (987)
-+..+..+++..++|++|++++.+
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345678899999999999999865
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=42.68 E-value=2.7e+02 Score=31.05 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=57.2
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC--CCCCceeeEcCCCCCCccceeEEEe-CCCCCeEEEEeecCCCccEEEEecC
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRPGEQSIHKVFV-DPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl--~~~~~~~~~l~~~~~~~~~i~~i~l-Dp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
-.++++.+.+|.+++|..-..+..+.. .+.....+. +...+.....--|+ |. ..++++-. +|..+.+...
T Consensus 130 ~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va--~d~~~~~v~~~~~l~d~--~~~i~~D~---~gnl~~l~~~ 202 (321)
T PF03178_consen 130 FYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVA--RDYQPRWVTAAEFLVDE--DTIIVGDK---DGNLFVLRYN 202 (321)
T ss_dssp SSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEE--EESS-BEEEEEEEE-SS--SEEEEEET---TSEEEEEEE-
T ss_pred EEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEE--ecCCCccEEEEEEecCC--cEEEEEcC---CCeEEEEEEC
Confidence 369999999999999997777666544 333333221 11111223344566 65 44444444 5555444332
Q ss_pred CC---------CceeccCC-CCceEEEE---eecCC-CCCC-CCcceEEEEcCCCcEEEEE
Q 001978 99 WS---------KPRVLSKL-KGLVVNAV---AWNRQ-QITE-ASTKEIILGTDTGQLHEMA 144 (987)
Q Consensus 99 ~~---------k~k~L~kl-kg~~i~sV---aw~~~-~~~~-~st~~iLiGt~~G~i~e~~ 144 (987)
.. +......+ -|-.|+++ ...+. ...+ .....++.||.+|.|+...
T Consensus 203 ~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 203 PEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred CCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 11 11222211 14466666 54432 0111 0124699999999999543
No 372
>PRK05423 hypothetical protein; Provisional
Probab=42.43 E-value=52 Score=29.33 Aligned_cols=57 Identities=12% Similarity=0.289 Sum_probs=38.0
Q ss_pred cCcccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001978 766 LKIEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISA 822 (987)
Q Consensus 766 l~i~dlL~~~p~~~~I~~~Kd~L~~~L~~y~~~i~~l~~~m~~~~~~~~~l~~~i~~ 822 (987)
+.+..++.++.+.|++++++..|.++-.+|..++...-..=.+..+.-.++.+.+..
T Consensus 43 lLLdNL~~YIk~~Ms~e~i~~II~nMr~DYEdRVDDyiIknAElSKeRReiskklk~ 99 (104)
T PRK05423 43 LLLDNLSDYIKPGMSIEEIQGIIANMKSDYEDRVDDYIIKNAELSKERREISKKLKA 99 (104)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhhHHHhhHHHHHhhHHhhHHHHHHHHHHHH
Confidence 334456777888999999999999999999988776543222333333444444433
No 373
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=42.15 E-value=25 Score=25.30 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHhC
Q 001978 537 HEIVVHHYIQQGEAKKALQMLRK 559 (987)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~l~~ 559 (987)
|..+...|...|+|++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34577899999999999998764
No 374
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=42.06 E-value=5.4 Score=32.14 Aligned_cols=28 Identities=21% Similarity=0.591 Sum_probs=20.9
Q ss_pred ccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHH
Q 001978 836 CGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLI 880 (987)
Q Consensus 836 C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~ 880 (987)
|..|+++|.. . ..++=.-|..||.+|+.
T Consensus 1 C~~C~~~I~~-----~------------~~~~~~~~~~~H~~Cf~ 28 (58)
T PF00412_consen 1 CARCGKPIYG-----T------------EIVIKAMGKFWHPECFK 28 (58)
T ss_dssp BTTTSSBESS-----S------------SEEEEETTEEEETTTSB
T ss_pred CCCCCCCccC-----c------------EEEEEeCCcEEEccccc
Confidence 7889999887 3 44444677888888874
No 375
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=41.47 E-value=4.8e+02 Score=28.03 Aligned_cols=110 Identities=10% Similarity=0.110 Sum_probs=61.0
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCC-------CCccceeEEEeCCCCCeEEEEeecCCCccEEE
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGR-------PGEQSIHKVFVDPGGSHCIATIVGSGGAETFY 94 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~-------~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y 94 (987)
+.+.+++..++.+|+|+.+ ..+.+|++...+.++.-+... ........++.-+.+..| +|.+ ..-+|
T Consensus 139 ~~~~~i~~~~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L-l~~~----~~g~f 212 (275)
T PF00780_consen 139 DPPSSIAFLGNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFL-LCYD----NIGVF 212 (275)
T ss_pred CCcEEEEEeCCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEE-EEec----ceEEE
Confidence 6689999999999999977 478889943444444321110 011234555555556555 4555 55567
Q ss_pred EecCCCCce-eccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 95 THAKWSKPR-VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 95 ~~~~~~k~k-~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
++..-...+ .--++.. ..+++++. .++|+|-.++.|--..+..
T Consensus 213 v~~~G~~~r~~~i~W~~-~p~~~~~~---------~pyli~~~~~~iEV~~~~~ 256 (275)
T PF00780_consen 213 VNKNGEPSRKSTIQWSS-APQSVAYS---------SPYLIAFSSNSIEVRSLET 256 (275)
T ss_pred EcCCCCcCcccEEEcCC-chhEEEEE---------CCEEEEECCCEEEEEECcC
Confidence 766443322 1112222 44455554 3678886665444444443
No 376
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=41.46 E-value=25 Score=23.66 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHhCCC
Q 001978 537 HEIVVHHYIQQGEAKKALQMLRKPA 561 (987)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~l~~~~ 561 (987)
|..+++.|.+.|++++|++++.+..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 5678899999999999999987653
No 377
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=41.38 E-value=4.2e+02 Score=34.79 Aligned_cols=159 Identities=12% Similarity=0.165 Sum_probs=94.1
Q ss_pred CceeEEEEeCC---EEEEEecCCeEEEEeC---CCC-CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE
Q 001978 22 GVITCMSAGND---VIVLGTSKGWLIRHDF---GAG-DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY 94 (987)
Q Consensus 22 ~~i~~~~v~nn---~l~~~~~~g~l~ridl---~~~-~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y 94 (987)
.++..+||+.. +++-|-..|+|-.||+ ..+ .+.+-.+--.. ...++..+=+=+.|..+.++++ ||.+-.
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av~t~---DG~v~~ 1124 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFAVSTK---DGSVRV 1124 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEEEEcC---CCeEEE
Confidence 45667777765 4556667899999999 222 23333322111 2467788888888999999988 898865
Q ss_pred EecCC---C-----Cce--eccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCC
Q 001978 95 THAKW---S-----KPR--VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNEL 164 (987)
Q Consensus 95 ~~~~~---~-----k~k--~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~ 164 (987)
+.... . +.| .+. ..|..+..-|++.. .-+--++.+|..|.|..-.+... ..-+. .+.+..
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~-~~g~vv~m~a~~~~----~~S~~lvy~T~~~~iv~~D~r~~---~~~w~--lk~~~~ 1194 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLK-KDGVVVSMHAFTAI----VQSHVLVYATDLSRIVSWDTRMR---HDAWR--LKNQLR 1194 (1431)
T ss_pred EEccccccccceeeeeeccccc-CCCceEEeeccccc----ccceeEEEEEeccceEEecchhh---hhHHh--hhcCcc
Confidence 43222 1 111 122 24677777777622 11235677888876665433211 00111 122223
Q ss_pred CCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 165 PEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 165 ~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
.|.|+++.+.. ...|+++.||.+.|--|+=
T Consensus 1195 hG~vTSi~idp-----~~~WlviGts~G~l~lWDL 1224 (1431)
T KOG1240|consen 1195 HGLVTSIVIDP-----WCNWLVIGTSRGQLVLWDL 1224 (1431)
T ss_pred ccceeEEEecC-----CceEEEEecCCceEEEEEe
Confidence 47899999873 2358999888888887863
No 378
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=41.34 E-value=28 Score=23.93 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHhCC
Q 001978 537 HEIVVHHYIQQGEAKKALQMLRKP 560 (987)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~l~~~ 560 (987)
|..++..|.+.|++++|++++.+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 667899999999999999998754
No 379
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=41.06 E-value=41 Score=31.77 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=23.9
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIA 881 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~ 881 (987)
....|..|++++...+. + ..+..-|+|.+-..|-..
T Consensus 53 ~~~~C~~C~~~fg~l~~--~------------~~~C~~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFN--R------------GRVCVDCKHRVCKKCGVY 88 (118)
T ss_dssp CCSB-TTTS-BCSCTST--T------------CEEETTTTEEEETTSEEE
T ss_pred CCcchhhhCCcccccCC--C------------CCcCCcCCccccCccCCc
Confidence 46799999998543211 3 667778999888888654
No 380
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=40.90 E-value=77 Score=29.88 Aligned_cols=49 Identities=18% Similarity=0.136 Sum_probs=34.3
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+++.|+|++|++..+.- ..-..+....|.-++..|+|.+|...|.+..
T Consensus 26 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 26 NLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888775421 1223566677888888888888888887764
No 381
>PRK01742 tolB translocation protein TolB; Provisional
Probab=40.89 E-value=3.6e+02 Score=31.51 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=61.1
Q ss_pred CCceeEEEEeCC--EEEEEe-cC--CeEEEEeCCCCCceeeE-cCCCCCCccceeEEEeCCCCCeEEEEeecCCCc--cE
Q 001978 21 RGVITCMSAGND--VIVLGT-SK--GWLIRHDFGAGDSYDID-LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGA--ET 92 (987)
Q Consensus 21 ~~~i~~~~v~nn--~l~~~~-~~--g~l~ridl~~~~~~~~~-l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g--~~ 92 (987)
.+.+.+.+.+.+ .|+.+. .+ ..|+++|+...+...+. .+ +....+-..|.|.+++++... +| ..
T Consensus 203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~------g~~~~~~wSPDG~~La~~~~~--~g~~~I 274 (429)
T PRK01742 203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR------GHNGAPAFSPDGSRLAFASSK--DGVLNI 274 (429)
T ss_pred CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC------CccCceeECCCCCEEEEEEec--CCcEEE
Confidence 345677777655 454433 22 47999999322222221 11 122346678999999887642 34 33
Q ss_pred EEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcC-CC--cEEEEEe
Q 001978 93 FYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD-TG--QLHEMAV 145 (987)
Q Consensus 93 ~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~-~G--~i~e~~i 145 (987)
|-++....+.+.|..- ...+.+++|.++ ...|+..+. +| .||....
T Consensus 275 y~~d~~~~~~~~lt~~-~~~~~~~~wSpD------G~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 275 YVMGANGGTPSQLTSG-AGNNTEPSWSPD------GQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred EEEECCCCCeEeeccC-CCCcCCEEECCC------CCEEEEEECCCCCceEEEEEC
Confidence 4455555566777653 346789999843 124665543 35 4555443
No 382
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=40.84 E-value=5.5e+02 Score=31.94 Aligned_cols=147 Identities=17% Similarity=0.196 Sum_probs=86.3
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec-----
Q 001978 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA----- 97 (987)
Q Consensus 24 i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~----- 97 (987)
.+++.-..+.+++|+.+|.|-.+|+ ..+.++.++-| ++.|=.|-+-|.|.-++..+. |..+-++..
T Consensus 417 ~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH-----dgaIWsi~~~pD~~g~vT~sa---DktVkfWdf~l~~~ 488 (888)
T KOG0306|consen 417 ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAH-----DGAIWSISLSPDNKGFVTGSA---DKTVKFWDFKLVVS 488 (888)
T ss_pred EEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcc-----ccceeeeeecCCCCceEEecC---CcEEEEEeEEEEec
Confidence 4677778889999999999999999 77888888876 578888888888887665544 444433321
Q ss_pred -CCCCceeccCCC-------CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCcee
Q 001978 98 -KWSKPRVLSKLK-------GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (987)
Q Consensus 98 -~~~k~k~L~klk-------g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~ 169 (987)
..++-|.|+ ++ .-+|-||...|+. +-..+|-=+..+--+.++. -+.+-.+| +-.=||+
T Consensus 489 ~~gt~~k~ls-l~~~rtLel~ddvL~v~~Spdg------k~LaVsLLdnTVkVyflDt----lKFflsLY---GHkLPV~ 554 (888)
T KOG0306|consen 489 VPGTQKKVLS-LKHTRTLELEDDVLCVSVSPDG------KLLAVSLLDNTVKVYFLDT----LKFFLSLY---GHKLPVL 554 (888)
T ss_pred cCcccceeee-eccceEEeccccEEEEEEcCCC------cEEEEEeccCeEEEEEecc----eeeeeeec---cccccee
Confidence 122223222 11 1267788887431 2233343333333333332 12233333 1113588
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEE
Q 001978 170 GLQMETASLSNGTRYYVMAVTPTRLYSF 197 (987)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f 197 (987)
++.+.. +...++-.|.+..+--|
T Consensus 555 smDIS~-----DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 555 SMDISP-----DSKLIVTGSADKNVKIW 577 (888)
T ss_pred EEeccC-----CcCeEEeccCCCceEEe
Confidence 888752 23556655555555555
No 383
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=40.55 E-value=21 Score=24.76 Aligned_cols=28 Identities=29% Similarity=0.660 Sum_probs=10.9
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEE-EcCCChhHHHhH
Q 001978 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYV-FPCGHAFHAQCL 879 (987)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvv-FpCgH~fH~~CL 879 (987)
.|.+|++++.+ . .+|. -.|.-.+|..|.
T Consensus 2 ~C~~C~~~~~~-----~------------~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-----G------------WFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S-------------------EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-----C------------ceEECccCCCccChhcC
Confidence 69999999887 2 3333 359999999995
No 384
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=39.88 E-value=2.1e+02 Score=37.50 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=7.1
Q ss_pred hcccHHHHHHHHh
Q 001978 546 QQGEAKKALQMLR 558 (987)
Q Consensus 546 ~~~~~~~AL~~l~ 558 (987)
..|++++|+..+.
T Consensus 521 ~~Gr~eeAi~~~r 533 (987)
T PRK09782 521 QVEDYATALAAWQ 533 (987)
T ss_pred HCCCHHHHHHHHH
Confidence 4555555555554
No 385
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=39.50 E-value=9.1e+02 Score=30.71 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=54.9
Q ss_pred HHHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhcCC--C---ChHHHHHHhcCcChHHHH
Q 001978 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKINYI--L---SFEEITLKFISVSEQDAL 439 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~--~---~~E~v~lkFl~~~~~~~L 439 (987)
++..-.|++++|++++.... .-...+...|..+...|++.+|++.|.+.... . .+-..+..+++.++.+.-
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45666799999998876421 23456888899999999999999999986411 1 122344445566666666
Q ss_pred HHHHHHHhhc
Q 001978 440 RTFLLRKLDN 449 (987)
Q Consensus 440 ~~YL~~kl~~ 449 (987)
..+|..-+..
T Consensus 103 ~~~l~~~l~~ 112 (765)
T PRK10049 103 LVKAKQLVSG 112 (765)
T ss_pred HHHHHHHHHh
Confidence 6666665543
No 386
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.45 E-value=1.9e+02 Score=37.19 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=67.4
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCe-EEEEeecCCCccEEEEecCC-C
Q 001978 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSH-CIATIVGSGGAETFYTHAKW-S 100 (987)
Q Consensus 24 i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~h-lli~~~~~~~g~~~Y~~~~~-~ 100 (987)
.++=.++.|+++.|+.+|.|-.+|- -|..-.-+..-+......+|.++.+-+.|.- ++..+. +|+.+.+.... .
T Consensus 1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~---~G~I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ---DGDIQLLDLRMSS 1290 (1387)
T ss_pred ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc---CCeEEEEecccCc
Confidence 3444577899999999999999998 3322111222221222345999999887765 666666 89999998766 3
Q ss_pred CceeccCCC----CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 101 KPRVLSKLK----GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 101 k~k~L~klk----g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
+.-.+.--. |-..++..-.+.. .-|-.|+. +.|-.+.+.+
T Consensus 1291 ~e~~~~iv~~~~yGs~lTal~VH~ha------piiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHEHA------PIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred ccccceeeeccccCccceeeeeccCC------CeeeecCc-ceEEEEecCh
Confidence 333332222 4456676666321 12344444 5454444443
No 387
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=39.45 E-value=6.2e+02 Score=28.75 Aligned_cols=154 Identities=9% Similarity=0.116 Sum_probs=82.9
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (987)
..|.++.-.-+-|++-+.. .||.+|+ +-.-...|+.-.++. -.+.-+...+.+.|+..-. +-..|+++-++...-
T Consensus 88 t~IL~VrmNr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~--~gl~AlS~n~~n~ylAyp~-s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 88 TSILAVRMNRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNP--KGLCALSPNNANCYLAYPG-STTSGDVVLFDTINL 163 (391)
T ss_pred CceEEEEEccceEEEEEcc-cEEEEecccceeehhhhccCCCc--cceEeeccCCCCceEEecC-CCCCceEEEEEcccc
Confidence 4577777777777777777 4999999 444444444321111 1244445555555555421 112688876665443
Q ss_pred Ccee-ccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCC--CCCceeeEEEEeec
Q 001978 101 KPRV-LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE--LPEAFMGLQMETAS 177 (987)
Q Consensus 101 k~k~-L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~--~~~~I~gi~~~~~~ 177 (987)
++.. +. -..-.+-|+||+++ + .-+-.++.+|.|..+---+.. ..+|++-- .+..|.+|.|.
T Consensus 164 ~~v~~I~-aH~~~lAalafs~~-G-----~llATASeKGTVIRVf~v~~G------~kl~eFRRG~~~~~IySL~Fs--- 227 (391)
T KOG2110|consen 164 QPVNTIN-AHKGPLAALAFSPD-G-----TLLATASEKGTVIRVFSVPEG------QKLYEFRRGTYPVSIYSLSFS--- 227 (391)
T ss_pred eeeeEEE-ecCCceeEEEECCC-C-----CEEEEeccCceEEEEEEcCCc------cEeeeeeCCceeeEEEEEEEC---
Confidence 3222 22 23348999999932 1 134455678988865432221 12344431 13446777765
Q ss_pred cCCCceEEEEEECCCeEEEE
Q 001978 178 LSNGTRYYVMAVTPTRLYSF 197 (987)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f 197 (987)
.+..++...+....+.-|
T Consensus 228 --~ds~~L~~sS~TeTVHiF 245 (391)
T KOG2110|consen 228 --PDSQFLAASSNTETVHIF 245 (391)
T ss_pred --CCCCeEEEecCCCeEEEE
Confidence 233555555555556655
No 388
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=39.20 E-value=32 Score=37.62 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=34.7
Q ss_pred HHchhhHHHHHHhcCCchh----HhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRDPLQ----RDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~~~~----~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
|.+-|+|+.|++-|+.... --.-+.+-|-.++..|+|.+|++.|.+..
T Consensus 125 y~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaL 176 (304)
T KOG0553|consen 125 YSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKAL 176 (304)
T ss_pred HHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhh
Confidence 7777888888888775322 23446667777888888888888888775
No 389
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.10 E-value=1e+02 Score=32.53 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=23.4
Q ss_pred EEeCCCCCeEEEEeecCCCccEEEEecCCCC
Q 001978 71 VFVDPGGSHCIATIVGSGGAETFYTHAKWSK 101 (987)
Q Consensus 71 i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (987)
+|+...|.++++.|. +|..|-++....|
T Consensus 16 ~~l~~~~~~Ll~iT~---~G~l~vWnl~~~k 43 (219)
T PF07569_consen 16 SFLECNGSYLLAITS---SGLLYVWNLKKGK 43 (219)
T ss_pred EEEEeCCCEEEEEeC---CCeEEEEECCCCe
Confidence 568889999999998 8999999876654
No 390
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=38.63 E-value=57 Score=22.53 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 392 QVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 392 ~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++...|.-+...|++++|.+.|.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467788999999999999999998875
No 391
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=38.53 E-value=6.2e+02 Score=31.95 Aligned_cols=77 Identities=16% Similarity=0.280 Sum_probs=50.7
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCcc-EEEEecCCCC------------ceec-------cCCCCceEEEEeecCCCCC
Q 001978 65 EQSIHKVFVDPGGSHCIATIVGSGGAE-TFYTHAKWSK------------PRVL-------SKLKGLVVNAVAWNRQQIT 124 (987)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~-~~Y~~~~~~k------------~k~L-------~klkg~~i~sVaw~~~~~~ 124 (987)
.-.|++|-+.|+|+|+.+... .|- +.++...|-+ .|.. ..-.+..|..|.|.|...+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~---~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGP---RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcC---CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 468999999999999998876 332 2344332210 1111 1113468999999965322
Q ss_pred CCCcceEEEEcCCCcEEEEEecc
Q 001978 125 EASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 125 ~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
...+++=|+++.|-++.+..
T Consensus 161 ---~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 161 ---DSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ---CCeEEEEecCCEEEEEecCC
Confidence 23688889999999998853
No 392
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=38.11 E-value=5.5e+02 Score=29.25 Aligned_cols=148 Identities=14% Similarity=0.169 Sum_probs=87.7
Q ss_pred eeEEEEeCC-EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC--
Q 001978 24 ITCMSAGND-VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW-- 99 (987)
Q Consensus 24 i~~~~v~nn-~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~-- 99 (987)
++++.-... .+|=+--+-+|-+||| .+....++--+ -.+..|-..| -.++|+|.. +-...-++-..
T Consensus 263 Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~-~~~Ll~~gs---sdr~irl~DPR~~ 332 (423)
T KOG0313|consen 263 VSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSP-LSKLLASGS---SDRHIRLWDPRTG 332 (423)
T ss_pred eeeEEEcCCCceEeecccceEEEEEeecccceeeeecC------cceeEeeccc-ccceeeecC---CCCceeecCCCCC
Confidence 444444433 4455556678999999 55555555443 3567777777 446777654 22222222211
Q ss_pred -CCc--eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceee-eeeeeCCCCCceeeEEEEe
Q 001978 100 -SKP--RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIK-LLFELNELPEAFMGLQMET 175 (987)
Q Consensus 100 -~k~--k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k-~v~~l~~~~~~I~gi~~~~ 175 (987)
.++ ..+.--++ -|.+|-|++. ++..|+=|.-+|.+-.-.+ |+.+ .+|.+..-...|..+-|..
T Consensus 333 ~gs~v~~s~~gH~n-wVssvkwsp~-----~~~~~~S~S~D~t~klWDv-------RS~k~plydI~~h~DKvl~vdW~~ 399 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKN-WVSSVKWSPT-----NEFQLVSGSYDNTVKLWDV-------RSTKAPLYDIAGHNDKVLSVDWNE 399 (423)
T ss_pred CCceeEEeeecchh-hhhheecCCC-----CceEEEEEecCCeEEEEEe-------ccCCCcceeeccCCceEEEEeccC
Confidence 111 12222233 7999999953 4557777888886654333 2345 6888875446788888852
Q ss_pred eccCCCceEEEEEECCCeEEEEecC
Q 001978 176 ASLSNGTRYYVMAVTPTRLYSFTGF 200 (987)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~g~ 200 (987)
...++-..+++.|+-|.|.
T Consensus 400 ------~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 400 ------GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ------CceEEeccCcceEEEeccc
Confidence 2456666668888877664
No 393
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=38.10 E-value=87 Score=32.41 Aligned_cols=32 Identities=16% Similarity=0.560 Sum_probs=22.7
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
..|..|+..+.. ..-.=.||--||..|...+.
T Consensus 182 k~Cn~Ch~LvIq------------------g~rCg~c~i~~h~~c~qty~ 213 (235)
T KOG4718|consen 182 KNCNLCHCLVIQ------------------GIRCGSCNIQYHRGCIQTYL 213 (235)
T ss_pred HHHhHhHHHhhe------------------eeccCcccchhhhHHHHHHh
Confidence 579999987655 11123567779999998775
No 394
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=37.99 E-value=6.4e+02 Score=30.60 Aligned_cols=144 Identities=11% Similarity=0.181 Sum_probs=81.6
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeCCCCC-ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDFGAGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl~~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (987)
+.|.|+...++.++-|...|+|-.||....+ +....-+ ..+|..+.+|+. .+++-.+. ++..--+.....
T Consensus 332 ~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH-----~~~V~sl~~~~~-~~~~Sgs~---D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 332 GPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGH-----TGRVYSLIVDSE-NRLLSGSL---DTTIKVWDLRTK 402 (537)
T ss_pred ccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCC-----cceEEEEEecCc-ceEEeeee---ccceEeecCCch
Confidence 4699999999999999999999999994332 3333333 478999999877 77777666 543333333322
Q ss_pred CceeccCCCCc--eEEEEeecCCCCCCCCcceEEE-EcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 101 KPRVLSKLKGL--VVNAVAWNRQQITEASTKEIIL-GTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 101 k~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLi-Gt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
+ +-+.-++|+ .+.++.. .+.+|+ ++.+|.|-.-.++.. .+..+++-+. -+.|+.+.+.
T Consensus 403 ~-~c~~tl~~h~~~v~~l~~---------~~~~Lvs~~aD~~Ik~WD~~~~-----~~~~~~~~~~-~~~v~~l~~~--- 463 (537)
T KOG0274|consen 403 R-KCIHTLQGHTSLVSSLLL---------RDNFLVSSSADGTIKLWDAEEG-----ECLRTLEGRH-VGGVSALALG--- 463 (537)
T ss_pred h-hhhhhhcCCccccccccc---------ccceeEeccccccEEEeecccC-----ceeeeeccCC-cccEEEeecC---
Confidence 1 222223443 2222221 124555 467897776654432 1233222221 1334444442
Q ss_pred cCCCceEEEEEECCCeEEEE
Q 001978 178 LSNGTRYYVMAVTPTRLYSF 197 (987)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f 197 (987)
...++.+++...++-|
T Consensus 464 ----~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 464 ----KEEILCSSDDGSVKLW 479 (537)
T ss_pred ----cceEEEEecCCeeEEE
Confidence 1355655667777766
No 395
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.90 E-value=99 Score=36.25 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHhC
Q 001978 537 HEIVVHHYIQQGEAKKALQMLRK 559 (987)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~l~~ 559 (987)
|+.+..+-+++|+.++|+++..+
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 45577777888888888887765
No 396
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=37.43 E-value=86 Score=38.48 Aligned_cols=83 Identities=10% Similarity=0.029 Sum_probs=59.7
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCce-eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC
Q 001978 31 NDVIVLGTSKGWLIRHDF-GAGDSY-DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL 108 (987)
Q Consensus 31 nn~l~~~~~~g~l~ridl-~~~~~~-~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl 108 (987)
.|..+-+..+|.|-.||+ +|.+.. .+--+ .+.|..+-..|++..+.-+.. |+..--+.-..++++++.-.
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH-----~GpV~c~nwhPnr~~lATGGR---DK~vkiWd~t~~~~~~~~tI 260 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPDRCEKKLTAH-----NGPVLCLNWHPNREWLATGGR---DKMVKIWDMTDSRAKPKHTI 260 (839)
T ss_pred CceEEEecCCceEEEeeccCchhHHHHhhcc-----cCceEEEeecCCCceeeecCC---CccEEEEeccCCCccceeEE
Confidence 456677789999999999 888743 22233 368899999999988887777 88887776655544332221
Q ss_pred -CCceEEEEeecCC
Q 001978 109 -KGLVVNAVAWNRQ 121 (987)
Q Consensus 109 -kg~~i~sVaw~~~ 121 (987)
-+.++.+|.|-|.
T Consensus 261 nTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 261 NTIAPVGRVKWRPA 274 (839)
T ss_pred eecceeeeeeeccC
Confidence 3579999999854
No 397
>KOG4328 consensus WD40 protein [Function unknown]
Probab=37.25 E-value=1e+02 Score=35.50 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=66.4
Q ss_pred eeEEEE--eCCEEEEEecCCeEEEEeC--CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 24 ITCMSA--GNDVIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 24 i~~~~v--~nn~l~~~~~~g~l~ridl--~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
++++++ .+..+++|...|....||+ +.++...+.++ +.+|..|-+.|.-.|.+++.. -++..--+....
T Consensus 282 fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh-----~kKI~sv~~NP~~p~~laT~s--~D~T~kIWD~R~ 354 (498)
T KOG4328|consen 282 FSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH-----KKKITSVALNPVCPWFLATAS--LDQTAKIWDLRQ 354 (498)
T ss_pred eeeccccCCCccEEEeecccceEEEEeecCCccchhhhhh-----hcccceeecCCCCchheeecc--cCcceeeeehhh
Confidence 455544 4568899999999999999 55657777777 359999999999888777643 145443444322
Q ss_pred CCce---eccCC-CCceEEEEeecCCCCCCCCcceEEEEcCCC
Q 001978 100 SKPR---VLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTG 138 (987)
Q Consensus 100 ~k~k---~L~kl-kg~~i~sVaw~~~~~~~~st~~iLiGt~~G 138 (987)
-..| .|+-+ ..+.|.|+.|.| ++|.+|.-+.+-
T Consensus 355 l~~K~sp~lst~~HrrsV~sAyFSP------s~gtl~TT~~D~ 391 (498)
T KOG4328|consen 355 LRGKASPFLSTLPHRRSVNSAYFSP------SGGTLLTTCQDN 391 (498)
T ss_pred hcCCCCcceecccccceeeeeEEcC------CCCceEeeccCC
Confidence 2111 13332 346899999984 355655544443
No 398
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=37.20 E-value=53 Score=29.89 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=40.6
Q ss_pred HHHHchhhHHHHHHhcCC-----chh--HhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRD-----PLQ--RDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~-----~~~--~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..+++.|+|++|+.+.+. |.. ...++...|..+...|++++|.+.|.+..
T Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 47 EAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 458889999999999763 222 35678899999999999999999988765
No 399
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=36.94 E-value=3.7e+02 Score=33.08 Aligned_cols=111 Identities=15% Similarity=0.171 Sum_probs=73.5
Q ss_pred ceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 23 VITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 23 ~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
-+-.|+|..+ .++.+..+..|-.+|+ .+.++..|.-. ++.++...++-+||.|-++..+.. +-...++...+
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs--~~~eG~lIKv~lDPSgiY~atScs---dktl~~~Df~s 672 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS--RDHEGDLIKVILDPSGIYLATSCS---DKTLCFVDFVS 672 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc--ccCCCceEEEEECCCccEEEEeec---CCceEEEEecc
Confidence 4567788766 4566667777777788 66666666543 233578999999999998877665 55554444444
Q ss_pred CCceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEec
Q 001978 100 SKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (987)
Q Consensus 100 ~k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (987)
... +...-| -.|+-|-|.+ +.+.++=-..+|-||.-.+.
T Consensus 673 gEc--vA~m~GHsE~VTG~kF~n------DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 673 GEC--VAQMTGHSEAVTGVKFLN------DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred chh--hhhhcCcchheeeeeecc------cchhheeecCCceEEEEECc
Confidence 322 112234 3688888873 34567777889999987664
No 400
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=36.56 E-value=5.8e+02 Score=27.56 Aligned_cols=118 Identities=17% Similarity=0.273 Sum_probs=62.4
Q ss_pred cceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCC-ceEEEEeecCCCCCCCCcceEEEEcC-CCcEEEE
Q 001978 66 QSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKG-LVVNAVAWNRQQITEASTKEIILGTD-TGQLHEM 143 (987)
Q Consensus 66 ~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg-~~i~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~ 143 (987)
..+..|-.||...+++..++. .+..|-+..+-.-.+.++ +.| .+.+.|++.. .+.++|... ++.|+..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~--~~~i~els~~G~vlr~i~-l~g~~D~EgI~y~g-------~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDE--PGEIYELSLDGKVLRRIP-LDGFGDYEGITYLG-------NGRYVLSEERDQRLYIF 91 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETT--TTEEEEEETT--EEEEEE--SS-SSEEEEEE-S-------TTEEEEEETTTTEEEEE
T ss_pred CCccccEEcCCCCeEEEEECC--CCEEEEEcCCCCEEEEEe-CCCCCCceeEEEEC-------CCEEEEEEcCCCcEEEE
Confidence 348999999988888888872 456655554322222222 334 4788888872 247888775 6999999
Q ss_pred EeccCcc-cc-ceeeeeeeeCC---CCCceeeEEEEeeccCCCceEEEEEEC--CCeEEEEec
Q 001978 144 AVDEKDK-RE-KYIKLLFELNE---LPEAFMGLQMETASLSNGTRYYVMAVT--PTRLYSFTG 199 (987)
Q Consensus 144 ~i~~~~~-~e-~~~k~v~~l~~---~~~~I~gi~~~~~~~~~~~~~~i~ast--~~rly~f~g 199 (987)
.+....+ .. ..++. +.+.- .-..+.||.|.. ...+++ +|-- |.+||.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~-~~l~~~~~~N~G~EGla~D~----~~~~L~-v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQK-ISLGFPNKGNKGFEGLAYDP----KTNRLF-VAKERKPKRLYEVNG 148 (248)
T ss_dssp EE----TT--EEEEEE-EE---S---SS--EEEEEET----TTTEEE-EEEESSSEEEEEEES
T ss_pred EEeccccccchhhceE-EecccccCCCcceEEEEEcC----CCCEEE-EEeCCCChhhEEEcc
Confidence 9855411 11 11222 23321 112389999974 222344 3332 667777765
No 401
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=36.42 E-value=5.9e+02 Score=30.48 Aligned_cols=71 Identities=6% Similarity=-0.004 Sum_probs=50.3
Q ss_pred ceeEEEEeCC--EEEEEecCCeEEEEeCCCCCceeeEcCCC-------CCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 23 VITCMSAGND--VIVLGTSKGWLIRHDFGAGDSYDIDLSAG-------RPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 23 ~i~~~~v~nn--~l~~~~~~g~l~ridl~~~~~~~~~l~~~-------~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
.|-|++|..| ..|=|..+|+|-.|++- .+.+.++...+ .+-.+.|-.+++.++-..|++|+. +|.++
T Consensus 346 PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~---DgTvr 421 (577)
T KOG0642|consen 346 PVLCVVVPSNGEHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS---DGTVR 421 (577)
T ss_pred ceEEEEecCCceEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecccccceeeecC---CceEE
Confidence 4788888777 67889999999999882 22222222211 111367788889999999999987 89997
Q ss_pred EEec
Q 001978 94 YTHA 97 (987)
Q Consensus 94 Y~~~ 97 (987)
-+..
T Consensus 422 ~w~~ 425 (577)
T KOG0642|consen 422 LWEP 425 (577)
T ss_pred eecc
Confidence 6654
No 402
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.30 E-value=1.2e+02 Score=32.88 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=37.0
Q ss_pred HHchhhHHHHHHhcCC-----c--hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRD-----P--LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~-----~--~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
+++.|+|..|.+..+. | .....-+.=.|+.+|.+|+|.+||..|+...
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~ 205 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVV 205 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 6666778888876542 2 2245667788999999999999999998875
No 403
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=36.19 E-value=3e+02 Score=32.11 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=49.9
Q ss_pred EEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceecc
Q 001978 27 MSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLS 106 (987)
Q Consensus 27 ~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~ 106 (987)
+.......++...++.++.+|-+.-+ . ++ +.+++.+|-+.|+|.++.+-+. +|..+.+.....+.-.--
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~--~--i~----~~~~i~~iavSpng~~iAl~t~---~g~l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFK--Q--ID----SDGPIIKIAVSPNGKFIALFTD---SGNLWVVSSDFSEKLCEF 254 (410)
T ss_pred eecCcceEEEEecCCEEEEEEccccc--c--cc----CCCCeEEEEECCCCCEEEEEEC---CCCEEEEECcccceeEEe
Confidence 33344444555566677777762211 1 22 2468999999999999998888 788877765554321111
Q ss_pred CC-CCceEEEEeec
Q 001978 107 KL-KGLVVNAVAWN 119 (987)
Q Consensus 107 kl-kg~~i~sVaw~ 119 (987)
.. .-...+.++|+
T Consensus 255 ~~~~~~~p~~~~WC 268 (410)
T PF04841_consen 255 DTDSKSPPKQMAWC 268 (410)
T ss_pred ecCcCCCCcEEEEE
Confidence 11 11355788898
No 404
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=36.06 E-value=1.3e+02 Score=35.92 Aligned_cols=67 Identities=12% Similarity=0.264 Sum_probs=44.3
Q ss_pred cceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEE
Q 001978 66 QSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (987)
Q Consensus 66 ~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (987)
+.|...-.+|.-..++++.. ||..--++.... ...+.+. .+..+.++|.++ ..-|++|+.+|.|--.
T Consensus 260 s~v~~ca~sp~E~kLvlGC~---DgSiiLyD~~~~-~t~~~ka-~~~P~~iaWHp~------gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCE---DGSIILYDTTRG-VTLLAKA-EFIPTLIAWHPD------GAIFVVGSEQGELQCF 326 (545)
T ss_pred CcceEEecCcccceEEEEec---CCeEEEEEcCCC-eeeeeee-cccceEEEEcCC------CcEEEEEcCCceEEEE
Confidence 34555556788888888888 888755544332 2333443 478899999943 2378999999966444
No 405
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=35.99 E-value=93 Score=35.56 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=38.8
Q ss_pred HHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+++.+... .-...+...|..++..|+|++|...+.+..
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al 63 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAI 63 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4778899999998865321 234677888999999999999999998875
No 406
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=35.77 E-value=1.4e+02 Score=23.12 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001978 786 EAICSSLDDYNKQIEQLKQEMN 807 (987)
Q Consensus 786 d~L~~~L~~y~~~i~~l~~~m~ 807 (987)
..|.+.|.+.+.-+..++..|.
T Consensus 4 ~~l~~ql~~l~~~l~elk~~l~ 25 (45)
T PF11598_consen 4 SQLIKQLSELNQMLQELKELLR 25 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655555554444
No 407
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.61 E-value=18 Score=39.83 Aligned_cols=33 Identities=30% Similarity=0.766 Sum_probs=28.0
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
..-.|.+|-..+.. + .+.||||.|-..|+....
T Consensus 12 ~~~~C~iC~~~~~~------------------p-~~l~C~H~~c~~C~~~~~ 44 (386)
T KOG2177|consen 12 EELTCPICLEYFRE------------------P-VLLPCGHNFCRACLTRSW 44 (386)
T ss_pred ccccChhhHHHhhc------------------C-ccccccchHhHHHHHHhc
Confidence 34689999988877 6 788999999999998855
No 408
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=35.48 E-value=7.7e+02 Score=28.68 Aligned_cols=125 Identities=12% Similarity=0.049 Sum_probs=67.6
Q ss_pred eCCEEEEEecCCeEEEEeCCCCCc-eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC-----Cce
Q 001978 30 GNDVIVLGTSKGWLIRHDFGAGDS-YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS-----KPR 103 (987)
Q Consensus 30 ~nn~l~~~~~~g~l~ridl~~~~~-~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~-----k~k 103 (987)
.++-+++.-..|.++|-+-..... +.+..|. ...+..+-.++.|.-++ .+. .|..+.....-. ...
T Consensus 248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~----~~~l~~v~~~~dg~l~l-~g~---~G~l~~S~d~G~~~~~~~f~ 319 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRAS----ARRIQNMGWRADGGLWL-LTR---GGGLYVSKGTGLTEEDFDFE 319 (398)
T ss_pred CCCCEEEEECCccEEEecCCCCcceEEecCCC----ccceeeeeEcCCCCEEE-EeC---CceEEEecCCCCccccccee
Confidence 333344444556777755422221 3344442 35677887778776554 445 477655433221 223
Q ss_pred eccC-CCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 104 VLSK-LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 104 ~L~k-lkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
.+.. -.+..+.+|++.+ .+.+++.+..|.++... +.+ +.|+.+-.-+..++++..|.+.
T Consensus 320 ~~~~~~~~~~l~~v~~~~-------d~~~~a~G~~G~v~~s~-D~G----~tW~~~~~~~~~~~~ly~v~f~ 379 (398)
T PLN00033 320 EADIKSRGFGILDVGYRS-------KKEAWAAGGSGILLRST-DGG----KSWKRDKGADNIAANLYSVKFF 379 (398)
T ss_pred ecccCCCCcceEEEEEcC-------CCcEEEEECCCcEEEeC-CCC----cceeEccccCCCCcceeEEEEc
Confidence 3321 1345689999873 24688888999888764 332 3444432122234567777764
No 409
>PF04641 Rtf2: Rtf2 RING-finger
Probab=35.34 E-value=21 Score=38.95 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=27.6
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEE-cCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVF-PCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvF-pCgH~fH~~CL~~~~ 883 (987)
.-.|+++++.+.+ + ..||++ ||||+|=..|+..--
T Consensus 113 ~~~CPvt~~~~~~-----~-----------~~fv~l~~cG~V~s~~alke~k 148 (260)
T PF04641_consen 113 RFICPVTGKEFNG-----K-----------HKFVYLRPCGCVFSEKALKELK 148 (260)
T ss_pred eeECCCCCcccCC-----c-----------eeEEEEcCCCCEeeHHHHHhhc
Confidence 3479999999965 3 266666 899999999998763
No 410
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.25 E-value=2.6e+02 Score=33.28 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=52.7
Q ss_pred EEEEEecCCeEEEEeC--CCCCceeeEcCCCCC--CccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCcee-ccC
Q 001978 33 VIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRP--GEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRV-LSK 107 (987)
Q Consensus 33 ~l~~~~~~g~l~ridl--~~~~~~~~~l~~~~~--~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~-L~k 107 (987)
.-++|++++.|+|||. +..+ .+....+.+ ....-..+-.-..| |+.|.+. .|+.--..+--.++|. |+-
T Consensus 396 ~TlvGLs~n~vfriDpRv~~~~--kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~---~GdIRLYdri~~~AKTAlPg 469 (644)
T KOG2395|consen 396 QTLVGLSDNSVFRIDPRVQGKN--KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSL---KGDIRLYDRIGRRAKTALPG 469 (644)
T ss_pred ccEEeecCCceEEecccccCcc--eeeeeeccccccccccceeeecCCc-eEEEeec---CCcEEeehhhhhhhhhcccc
Confidence 3489999999999999 3222 121111100 00111112222334 4555555 5655322222233333 554
Q ss_pred CCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEe
Q 001978 108 LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAV 145 (987)
Q Consensus 108 lkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i 145 (987)
| |-.|+.|--. ..|..|+||-+--|..+..
T Consensus 470 L-G~~I~hVdvt-------adGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 470 L-GDAIKHVDVT-------ADGKWILATCKTYLLLIDT 499 (644)
T ss_pred c-CCceeeEEee-------ccCcEEEEecccEEEEEEE
Confidence 3 7788887665 3578999998876666554
No 411
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=34.94 E-value=7e+02 Score=28.04 Aligned_cols=98 Identities=23% Similarity=0.149 Sum_probs=70.7
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccc
Q 001978 619 KYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMS 698 (987)
Q Consensus 619 ~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g 698 (987)
+.-+.+..+.+..++.++-.-+.-|++..+=++|..|-++. + ++--.+--...|.+++...++.....++.
T Consensus 194 k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~sk-------K--sPIGyepFv~~~~~~~~~~eA~~yI~k~~ 264 (319)
T PF04840_consen 194 KQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSK-------K--SPIGYEPFVEACLKYGNKKEASKYIPKIP 264 (319)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCC-------C--CCCChHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 45566777778889999988888898877667888887643 1 22333456778888887776666566777
Q ss_pred cHHHHHHHHHh-cCHHHHHHHhhccCCCHH
Q 001978 699 MHEEAVALALQ-VDPELAMAEADKVEDDED 727 (987)
Q Consensus 699 ~~~eAl~l~l~-~di~lA~~~~~~~~~d~~ 727 (987)
. ++-+++++. ++...|.+.|-+.. |.+
T Consensus 265 ~-~~rv~~y~~~~~~~~A~~~A~~~k-d~~ 292 (319)
T PF04840_consen 265 D-EERVEMYLKCGDYKEAAQEAFKEK-DID 292 (319)
T ss_pred h-HHHHHHHHHCCCHHHHHHHHHHcC-CHH
Confidence 6 888888888 78888888885554 443
No 412
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=34.60 E-value=4.1e+02 Score=31.72 Aligned_cols=117 Identities=20% Similarity=0.315 Sum_probs=67.6
Q ss_pred cceeEEEeCCCCCe-EEEEeecCCCccEEEEec-CCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEE---cCCCcE
Q 001978 66 QSIHKVFVDPGGSH-CIATIVGSGGAETFYTHA-KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILG---TDTGQL 140 (987)
Q Consensus 66 ~~i~~i~lDp~G~h-lli~~~~~~~g~~~Y~~~-~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiG---t~~G~i 140 (987)
+.|...-=+|.|.- ++|+.+...+.-.||--. ...+++.++++--.....|-|. |. .+=+++| +..|.+
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfws-Pk-----G~fvvva~l~s~~g~l 519 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWS-PK-----GRFVVVAALVSRRGDL 519 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEc-CC-----CcEEEEEEecccccce
Confidence 45556656898876 566555222334466444 6667777776655789999999 33 1233444 346778
Q ss_pred EEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEEC--------CCeEEEEecC
Q 001978 141 HEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT--------PTRLYSFTGF 200 (987)
Q Consensus 141 ~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast--------~~rly~f~g~ 200 (987)
+.+..+.. .++.+ ..++- ..-+.+.|.. ..||++-.+| +=|||.|.|+
T Consensus 520 ~F~D~~~a-----~~k~~-~~~eh-~~at~veWDP-----tGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 520 EFYDTDYA-----DLKDT-ASPEH-FAATEVEWDP-----TGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EEEecchh-----hhhhc-cCccc-cccccceECC-----CCCEEEEeeehhhhccccceEEEEeecH
Confidence 77766542 13332 33331 1256778863 2367665555 2478888874
No 413
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=34.53 E-value=11 Score=44.06 Aligned_cols=41 Identities=20% Similarity=0.493 Sum_probs=30.9
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCC
Q 001978 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTN 888 (987)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~ 888 (987)
+-|..||.-|++-- | ..+-.+.||-.||++|.-+--.++.+
T Consensus 157 tFCD~CGEmL~GLv---r-----------QGlKC~gCglNyHKRCa~kipNNCsG 197 (888)
T KOG4236|consen 157 TFCDFCGEMLFGLV---R-----------QGLKCEGCGLNYHKRCAFKIPNNCSG 197 (888)
T ss_pred hHHHHHHHHHHHHH---H-----------ccccccCCCCcHhhhhhhcCCCCCCc
Confidence 57999999999832 2 15678999999999999765444434
No 414
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.45 E-value=5.9e+02 Score=32.36 Aligned_cols=138 Identities=15% Similarity=0.077 Sum_probs=0.0
Q ss_pred EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCc
Q 001978 33 VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGL 111 (987)
Q Consensus 33 ~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~ 111 (987)
++..++++|.|-.||. =.--+++|+=| +++|+.|-++|++-..+..-+ |-..-.++.+.+ |-|-.|.||
T Consensus 23 wILtslHsG~IQlWDYRM~tli~rFdeH-----dGpVRgv~FH~~qplFVSGGD---DykIkVWnYk~r--rclftL~GH 92 (1202)
T KOG0292|consen 23 WILTSLHSGVIQLWDYRMGTLIDRFDEH-----DGPVRGVDFHPTQPLFVSGGD---DYKIKVWNYKTR--RCLFTLLGH 92 (1202)
T ss_pred EEEEeecCceeeeehhhhhhHHhhhhcc-----CCccceeeecCCCCeEEecCC---ccEEEEEecccc--eehhhhccc
Q ss_pred --eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEE
Q 001978 112 --VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAV 189 (987)
Q Consensus 112 --~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~as 189 (987)
.|+.|.|. +.++ =||=.+.+-.|-.-++..+ +.+-.+.+-.+=|+.-+|. +....+|-||
T Consensus 93 lDYVRt~~FH-heyP-----WIlSASDDQTIrIWNwqsr-------~~iavltGHnHYVMcAqFh-----ptEDlIVSaS 154 (1202)
T KOG0292|consen 93 LDYVRTVFFH-HEYP-----WILSASDDQTIRIWNWQSR-------KCIAVLTGHNHYVMCAQFH-----PTEDLIVSAS 154 (1202)
T ss_pred cceeEEeecc-CCCc-----eEEEccCCCeEEEEeccCC-------ceEEEEecCceEEEeeccC-----CccceEEEec
Q ss_pred CCCeEEEEe
Q 001978 190 TPTRLYSFT 198 (987)
Q Consensus 190 t~~rly~f~ 198 (987)
-+..+--|+
T Consensus 155 LDQTVRVWD 163 (1202)
T KOG0292|consen 155 LDQTVRVWD 163 (1202)
T ss_pred ccceEEEEe
No 415
>PF13041 PPR_2: PPR repeat family
Probab=34.41 E-value=38 Score=26.21 Aligned_cols=24 Identities=17% Similarity=0.438 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHhCC
Q 001978 537 HEIVVHHYIQQGEAKKALQMLRKP 560 (987)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~l~~~ 560 (987)
|..++..|.+.|++++|++++.+.
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M 29 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEM 29 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHH
Confidence 677999999999999999999765
No 416
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=34.14 E-value=7.5e+02 Score=28.90 Aligned_cols=155 Identities=16% Similarity=0.131 Sum_probs=96.1
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
++.|..+.+.. +.+++|-.+.++..|++ |++++.|-.+. .+.|..+.+ =+-.|.++-++ +|..+-+...
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~----~~sidcv~~-In~~HfvsGSd---nG~IaLWs~~ 356 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGG----EGSIDCVAF-INDEHFVSGSD---NGSIALWSLL 356 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEec-cccceeeeeCC----CCCeeeEEE-ecccceeeccC---CceEEEeeec
Confidence 35566666654 57788888999999999 77766554442 345665554 23568888887 8999888765
Q ss_pred CCCceeccCC--------C----CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCC
Q 001978 99 WSKPRVLSKL--------K----GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPE 166 (987)
Q Consensus 99 ~~k~k~L~kl--------k----g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~ 166 (987)
..|+-...++ . +.=|+|||-.+ . +.=+..|.-+|.|=.-.++.+ .+.+..++.++ ..+
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~-----sdL~asGS~~G~vrLW~i~~g---~r~i~~l~~ls-~~G 426 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-G-----SDLLASGSWSGCVRLWKIEDG---LRAINLLYSLS-LVG 426 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecc-c-----CceEEecCCCCceEEEEecCC---ccccceeeecc-ccc
Confidence 4443222221 0 01477777773 2 224556777898877777655 34567777777 357
Q ss_pred ceeeEEEEeeccCCCceEEEEEEC-CCeEEEEec
Q 001978 167 AFMGLQMETASLSNGTRYYVMAVT-PTRLYSFTG 199 (987)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~ast-~~rly~f~g 199 (987)
-|.+|.|.. +.++++.... -.|+=+|..
T Consensus 427 fVNsl~f~~-----sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 427 FVNSLAFSN-----SGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred EEEEEEEcc-----CCCEEEEecccccccceeeE
Confidence 789999752 2233433322 566666654
No 417
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.98 E-value=2.4e+02 Score=34.96 Aligned_cols=131 Identities=11% Similarity=0.067 Sum_probs=80.7
Q ss_pred eCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC
Q 001978 30 GNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL 108 (987)
Q Consensus 30 ~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl 108 (987)
.+|.|+.+-.+|.|..||| .+.+-..+.+= . .-.-.++++-..++--|++|+... ||.+=-+..++.+-+....-
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f-~-EH~Rs~~~ldfh~tep~iliSGSQ--Dg~vK~~DlR~~~S~~t~~~ 174 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVF-N-EHERSANKLDFHSTEPNILISGSQ--DGTVKCWDLRSKKSKSTFRS 174 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHh-h-hhccceeeeeeccCCccEEEecCC--CceEEEEeeecccccccccc
Confidence 4556677778899999999 54321111110 0 003478999999998888887542 67666666655554444321
Q ss_pred CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 109 KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 109 kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
-.=.|+-|+|.+... ..|.-+...|.|-.-.|- ..+++.+++ .-.. |||..+-|..
T Consensus 175 nSESiRDV~fsp~~~-----~~F~s~~dsG~lqlWDlR---qp~r~~~k~-~AH~--GpV~c~nwhP 230 (839)
T KOG0269|consen 175 NSESIRDVKFSPGYG-----NKFASIHDSGYLQLWDLR---QPDRCEKKL-TAHN--GPVLCLNWHP 230 (839)
T ss_pred cchhhhceeeccCCC-----ceEEEecCCceEEEeecc---CchhHHHHh-hccc--CceEEEeecC
Confidence 123799999995432 257777777866555442 234555553 3333 7799999973
No 418
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=33.72 E-value=22 Score=30.46 Aligned_cols=34 Identities=18% Similarity=0.425 Sum_probs=25.4
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (987)
.-.|.+|+..+.. | |+-||||+|=+.|+.+.+..
T Consensus 4 ~f~CpIt~~lM~d------------------P-Vi~~~G~tyer~~I~~~l~~ 37 (73)
T PF04564_consen 4 EFLCPITGELMRD------------------P-VILPSGHTYERSAIERWLEQ 37 (73)
T ss_dssp GGB-TTTSSB-SS------------------E-EEETTSEEEEHHHHHHHHCT
T ss_pred ccCCcCcCcHhhC------------------c-eeCCcCCEEcHHHHHHHHHc
Confidence 4579999877766 4 45699999999999988754
No 419
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=33.72 E-value=68 Score=32.18 Aligned_cols=43 Identities=16% Similarity=0.057 Sum_probs=25.1
Q ss_pred hHHHHHHhcCC--chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 376 EYAAALANCRD--PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 376 ~fe~Al~~~~~--~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
++|..+.+... .......+...|..+...|+|++|..+|.+..
T Consensus 18 ~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 62 (172)
T PRK02603 18 MADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEAL 62 (172)
T ss_pred HHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555442 22334456666666677777777777666554
No 420
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=33.51 E-value=76 Score=21.86 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=19.9
Q ss_pred EEeCCEEEEEecCCeEEEEeC-CCC
Q 001978 28 SAGNDVIVLGTSKGWLIRHDF-GAG 51 (987)
Q Consensus 28 ~v~nn~l~~~~~~g~l~ridl-~~~ 51 (987)
.+.++.++++..+|.|+-+|. .+.
T Consensus 3 ~~~~~~v~~~~~~g~l~a~d~~~G~ 27 (33)
T smart00564 3 VLSDGTVYVGSTDGTLYALDAKTGE 27 (33)
T ss_pred EEECCEEEEEcCCCEEEEEEcccCc
Confidence 456779999999999999998 543
No 421
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=33.33 E-value=1.9e+02 Score=33.16 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=60.5
Q ss_pred CceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEEec
Q 001978 22 GVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 22 ~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
+.|.+++-+.| .|+-|-.++++-.||| ....+..|+-+ ..-|+++-.+| .|..|+-|+- ++..+.|.+.
T Consensus 346 k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH-----~nlVS~Vk~~p~~g~fL~Tasy--D~t~kiWs~~ 418 (459)
T KOG0272|consen 346 KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH-----SNLVSQVKYSPQEGYFLVTASY--DNTVKIWSTR 418 (459)
T ss_pred cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc-----cchhhheEecccCCeEEEEccc--CcceeeecCC
Confidence 34777777777 4455557789999999 66666666555 36789999999 5665555433 3556678888
Q ss_pred CCCCceeccCCCCceEEEEeec
Q 001978 98 KWSKPRVLSKLKGLVVNAVAWN 119 (987)
Q Consensus 98 ~~~k~k~L~klkg~~i~sVaw~ 119 (987)
.+...|.|.- ..-.|-||...
T Consensus 419 ~~~~~ksLaG-He~kV~s~Dis 439 (459)
T KOG0272|consen 419 TWSPLKSLAG-HEGKVISLDIS 439 (459)
T ss_pred CcccchhhcC-CccceEEEEec
Confidence 8877777652 12256666665
No 422
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=33.33 E-value=6.7e+02 Score=27.37 Aligned_cols=139 Identities=10% Similarity=0.068 Sum_probs=85.2
Q ss_pred CCceeEEEEeCC---EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 21 RGVITCMSAGND---VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 21 ~~~i~~~~v~nn---~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
.+.+=.+|++.. +++-+-.+..|-.++. .++...=..+- ..+-.-.|+.+--.|.|+.|...+= ++.+--++
T Consensus 14 ~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vl-d~~hkrsVRsvAwsp~g~~La~aSF---D~t~~Iw~ 89 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVL-DDGHKRSVRSVAWSPHGRYLASASF---DATVVIWK 89 (312)
T ss_pred CCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEec-cccchheeeeeeecCCCcEEEEeec---cceEEEee
Confidence 456888999887 5666667777777788 45553211111 1111357899999999996555544 56665555
Q ss_pred cCCCCceeccCCCCc--eEEEEeecCCCCCCCCcceEEEE-cCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEE
Q 001978 97 AKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (987)
Q Consensus 97 ~~~~k~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~ 173 (987)
.....+.-+..+.|+ .|+||||++ .|.+|-- +.+-.+..-+++.. .|-.+--|++-.. .-|-.+.|
T Consensus 90 k~~~efecv~~lEGHEnEVK~Vaws~-------sG~~LATCSRDKSVWiWe~ded--dEfec~aVL~~Ht--qDVK~V~W 158 (312)
T KOG0645|consen 90 KEDGEFECVATLEGHENEVKCVAWSA-------SGNYLATCSRDKSVWIWEIDED--DEFECIAVLQEHT--QDVKHVIW 158 (312)
T ss_pred cCCCceeEEeeeeccccceeEEEEcC-------CCCEEEEeeCCCeEEEEEecCC--CcEEEEeeecccc--ccccEEEE
Confidence 555556667777775 899999993 2456655 44566777777643 2322333333222 22666777
Q ss_pred E
Q 001978 174 E 174 (987)
Q Consensus 174 ~ 174 (987)
.
T Consensus 159 H 159 (312)
T KOG0645|consen 159 H 159 (312)
T ss_pred c
Confidence 5
No 423
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=33.29 E-value=5.6e+02 Score=26.46 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=30.0
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCC
Q 001978 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSA 60 (987)
Q Consensus 24 i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~ 60 (987)
....++.++.++++..+|.|+.+|+ .+..+-+++++.
T Consensus 115 ~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 115 SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp -SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 3567778999999999999999999 777777777743
No 424
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=33.01 E-value=6.8e+02 Score=28.78 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCC
Q 001978 510 DEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKP 560 (987)
Q Consensus 510 d~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~ 560 (987)
..+++-++++.+.+.-+.+.+ .+.+|+..|+|.+++.++-++
T Consensus 172 A~~~v~~ll~~~pr~~~vlrL---------a~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 172 ARENVDQLLEMTPRHPEVLRL---------ALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred HHHHHHHHHHhCcCChHHHHH---------HHHHHHHhccHHHHHHHHHHH
Confidence 455677788888888888776 346899999999999998765
No 425
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=32.96 E-value=3.8e+02 Score=32.70 Aligned_cols=138 Identities=17% Similarity=0.138 Sum_probs=71.4
Q ss_pred HHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHhHChHHHHHHHHcC-CCCCCCcchh--hhhhcCCCCCCCCChHH
Q 001978 544 YIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIMLDAYETVESWMTT-NNLNPRKLIP--AMMRYSSEPHAKNETHE 616 (987)
Q Consensus 544 yi~~~~~~~AL~~l~~~----~~~~~li~k~~~~Ll~~~p~~ti~~l~~~-~~ld~~~lip--~L~~~~~~~~~~~~~~~ 616 (987)
++..+.|++|.+..++- ++....+|-.+.+-+....-+..++..+. -.++|...+- .+.... +.....+.
T Consensus 465 ~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~---~~~k~~d~ 541 (638)
T KOG1126|consen 465 SIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQ---HQLKRKDK 541 (638)
T ss_pred hhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHH---HHhhhhhH
Confidence 34556677777766542 22245677666666655555555555544 3778775421 111100 00112456
Q ss_pred HHHHHHHHHhhcCCC-ChhHHHHHHHHhhcCCCh--HHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehh
Q 001978 617 VIKYLEFCVHRLHNE-DPGVHNLLLSLYAKQEDD--SALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHI 693 (987)
Q Consensus 617 ~~~YLe~li~~~~~~-~~~ihn~ll~Ly~~~~~~--~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L 693 (987)
++.+++.-+.-+... -+.+|--. .|++-.... -..+++|+.. -++.+... -....+
T Consensus 542 AL~~~~~A~~ld~kn~l~~~~~~~-il~~~~~~~eal~~LEeLk~~-------------vP~es~v~-------~llgki 600 (638)
T KOG1126|consen 542 ALQLYEKAIHLDPKNPLCKYHRAS-ILFSLGRYVEALQELEELKEL-------------VPQESSVF-------ALLGKI 600 (638)
T ss_pred HHHHHHHHHhcCCCCchhHHHHHH-HHHhhcchHHHHHHHHHHHHh-------------CcchHHHH-------HHHHHH
Confidence 888888776544332 23444433 355543322 2356666665 11222111 123457
Q ss_pred hhccccHHHHHH
Q 001978 694 YGMMSMHEEAVA 705 (987)
Q Consensus 694 ~~~~g~~~eAl~ 705 (987)
|.+||+++.|+-
T Consensus 601 ~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 601 YKRLGNTDLALL 612 (638)
T ss_pred HHHHccchHHHH
Confidence 888999988875
No 426
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.78 E-value=6.9e+02 Score=32.78 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=32.4
Q ss_pred CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeee-eeeCCC-CCceeeEEEE
Q 001978 110 GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLL-FELNEL-PEAFMGLQME 174 (987)
Q Consensus 110 g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v-~~l~~~-~~~I~gi~~~ 174 (987)
+...+||+|.+. .....||-+.|.+..+.-... +|.. ...+.. +..|++|.|.
T Consensus 198 t~~~Tav~WSpr------GKQl~iG~nnGt~vQy~P~le------ik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 198 TNSQTAVLWSPR------GKQLFIGRNNGTEVQYEPSLE------IKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred ccceeeEEeccc------cceeeEecCCCeEEEeecccc------eeecccCCCcCCCcceeEEEEe
Confidence 456778888732 347899999998887754321 1221 112211 3568999996
No 427
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=32.69 E-value=4.7e+02 Score=25.41 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=42.1
Q ss_pred CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCC
Q 001978 101 KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (987)
Q Consensus 101 k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (987)
..+.|. -|..|+|+|=-+-. .+..-.-+||||... |+-+.++.+ .+-+.|. ++ ..|..|.+-.+..
T Consensus 40 ~i~~LN--in~~italaaG~l~-~~~~~D~LliGt~t~-llaYDV~~N--~d~Fyke---~~---DGvn~i~~g~~~~-- 105 (136)
T PF14781_consen 40 DISFLN--INQEITALAAGRLK-PDDGRDCLLIGTQTS-LLAYDVENN--SDLFYKE---VP---DGVNAIVIGKLGD-- 105 (136)
T ss_pred ceeEEE--CCCceEEEEEEecC-CCCCcCEEEEeccce-EEEEEcccC--chhhhhh---Cc---cceeEEEEEecCC--
Confidence 446666 46788888654221 111223577788776 666666544 2233333 33 2366666554321
Q ss_pred CceEEEEEECCCeEEEE
Q 001978 181 GTRYYVMAVTPTRLYSF 197 (987)
Q Consensus 181 ~~~~~i~ast~~rly~f 197 (987)
...-++++-.++.+.=|
T Consensus 106 ~~~~l~ivGGncsi~Gf 122 (136)
T PF14781_consen 106 IPSPLVIVGGNCSIQGF 122 (136)
T ss_pred CCCcEEEECceEEEEEe
Confidence 12334444455555544
No 428
>KOG4121 consensus Nuclear pore complex, Nup133 component (sc Nup133) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.64 E-value=3.3e+02 Score=34.97 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhcCCCChHHHHHHhcCcChHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q 001978 395 LVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATE 467 (987)
Q Consensus 395 ~~~~~~l~~~g~y~~Aa~~~~~~~~~~~~E~v~lkFl~~~~~~~L~~YL~~kl~~l~~~~~~q~~lL~~Wl~e 467 (987)
+.....|.+-|.|+.||++-.+-. .|...+...-..++.+.|..|...-.+ . ++.+...|..|+++
T Consensus 776 rdwlq~L~~vg~~e~Ai~iAEKY~---DfqsLV~lcdqld~kdrLq~y~~~~~e-~---~~eFs~~lf~y~ve 841 (1128)
T KOG4121|consen 776 RDWLQVLCKVGQYEQAIQIAEKYK---DFQSLVQLCDQLDQKDRLQDYETFFNE-Y---PKEFSFFLFEYLVE 841 (1128)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhh---hHHHHHHHHHhhCchhHHHHHHHHHHh-h---hHHHHHHHHHHHHh
Confidence 345556777788888888766654 677766666556666677777764332 1 13345566666654
No 429
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=32.58 E-value=18 Score=29.40 Aligned_cols=33 Identities=18% Similarity=0.461 Sum_probs=23.9
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+.+|.+..+++.. |+.--.|||+|=++.+.+++
T Consensus 11 ~~~CPiT~~~~~~------------------PV~s~~C~H~fek~aI~~~i 43 (57)
T PF11789_consen 11 SLKCPITLQPFED------------------PVKSKKCGHTFEKEAILQYI 43 (57)
T ss_dssp -SB-TTTSSB-SS------------------EEEESSS--EEEHHHHHHHC
T ss_pred ccCCCCcCChhhC------------------CcCcCCCCCeecHHHHHHHH
Confidence 4689999998877 77777999999999988776
No 430
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=32.43 E-value=63 Score=31.66 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=35.5
Q ss_pred HHHchhhHHHHHHhcCC-----ch--hHhHHHHHHHHHHHhcCCHHHHHHHHHh
Q 001978 370 VYLDMKEYAAALANCRD-----PL--QRDQVYLVQAEAAFATKDFHRAASFYAK 416 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~~--~~~~V~~~~~~~l~~~g~y~~Aa~~~~~ 416 (987)
..|++|+|++|.+..+. |. .-.+....-|+-+|.+|+|.+|+..|.+
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 37888999999888652 22 2457777888889999999998877654
No 431
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=32.25 E-value=3.6e+02 Score=29.84 Aligned_cols=155 Identities=11% Similarity=0.108 Sum_probs=89.1
Q ss_pred eeEEEEeCCEEEEEec--CCeEEEEeCC----CCCceeeEcCCCCC----------CccceeEEEeCCCCCeEEEEeecC
Q 001978 24 ITCMSAGNDVIVLGTS--KGWLIRHDFG----AGDSYDIDLSAGRP----------GEQSIHKVFVDPGGSHCIATIVGS 87 (987)
Q Consensus 24 i~~~~v~nn~l~~~~~--~g~l~ridl~----~~~~~~~~l~~~~~----------~~~~i~~i~lDp~G~hlli~~~~~ 87 (987)
..|.+.+.+=+.+||. +-.|-.+|.. .+.+.++.--.... -.+.|+.+-+.|.-..|+..++
T Consensus 115 cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr-- 192 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR-- 192 (430)
T ss_pred eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC--
Confidence 4455666666666654 4556666661 12222221110000 0257788888898776666666
Q ss_pred CCccEEEEecCCCCc----eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCC
Q 001978 88 GGAETFYTHAKWSKP----RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE 163 (987)
Q Consensus 88 ~~g~~~Y~~~~~~k~----k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~ 163 (987)
++.+-.+..+.+.+ |.+. .-..|+|+.|.|. ..-+|+||..-.+-.+.++.- +.+ +-..|+
T Consensus 193 -D~tvKlFDfsK~saKrA~K~~q--d~~~vrsiSfHPs------GefllvgTdHp~~rlYdv~T~----Qcf--vsanPd 257 (430)
T KOG0640|consen 193 -DNTVKLFDFSKTSAKRAFKVFQ--DTEPVRSISFHPS------GEFLLVGTDHPTLRLYDVNTY----QCF--VSANPD 257 (430)
T ss_pred -CCeEEEEecccHHHHHHHHHhh--ccceeeeEeecCC------CceEEEecCCCceeEEeccce----eEe--eecCcc
Confidence 67665555544422 3333 2368999999942 125677888877777766542 100 101122
Q ss_pred C--CCceeeEEEEeeccCCCceEEEEEECCCeEEEEecC
Q 001978 164 L--PEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTGF 200 (987)
Q Consensus 164 ~--~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g~ 200 (987)
. .+.|+.+.+. ...+..+-+|-...+--|+|.
T Consensus 258 ~qht~ai~~V~Ys-----~t~~lYvTaSkDG~IklwDGV 291 (430)
T KOG0640|consen 258 DQHTGAITQVRYS-----STGSLYVTASKDGAIKLWDGV 291 (430)
T ss_pred cccccceeEEEec-----CCccEEEEeccCCcEEeeccc
Confidence 1 2568888875 334678888888888889885
No 432
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=32.25 E-value=7.7e+02 Score=27.74 Aligned_cols=146 Identities=12% Similarity=0.196 Sum_probs=0.0
Q ss_pred hhcCCCceeEEEEeCC--EEEEEe-cCCeEEEEeC--CCCCceeeE----cCCCCCCccceeEEEeCCCCCeEEEEeecC
Q 001978 17 AAKGRGVITCMSAGND--VIVLGT-SKGWLIRHDF--GAGDSYDID----LSAGRPGEQSIHKVFVDPGGSHCIATIVGS 87 (987)
Q Consensus 17 ~~~~~~~i~~~~v~nn--~l~~~~-~~g~l~ridl--~~~~~~~~~----l~~~~~~~~~i~~i~lDp~G~hlli~~~~~ 87 (987)
.+.|.+. .+++.+.+ .+|+.. .++.|..+++ .......++ +|....+...-..|.++|.|++|.++....
T Consensus 188 ~~~G~GP-Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~ 266 (345)
T PF10282_consen 188 VPPGSGP-RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS 266 (345)
T ss_dssp CSTTSSE-EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT
T ss_pred cccCCCC-cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC
Q ss_pred CCccEEEEecCCCCceeccCCC--CceEEEEeecCCCCCCCCcceEEEEcCC-CcEEEEEeccCccccceeeeeeeeCCC
Q 001978 88 GGAETFYTHAKWSKPRVLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDT-GQLHEMAVDEKDKREKYIKLLFELNEL 164 (987)
Q Consensus 88 ~~g~~~Y~~~~~~k~k~L~klk--g~~i~sVaw~~~~~~~~st~~iLiGt~~-G~i~e~~i~~~~~~e~~~k~v~~l~~~ 164 (987)
++=..|=++...-+.+.+.... |..-+.++++ .+.+-++++..+ +.|..+.++...+.-+.......+++
T Consensus 267 ~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s------~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~- 339 (345)
T PF10282_consen 267 NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS------PDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPS- 339 (345)
T ss_dssp TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-------TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSS-
T ss_pred CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe------CCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCC-
Q ss_pred CCceeeEEE
Q 001978 165 PEAFMGLQM 173 (987)
Q Consensus 165 ~~~I~gi~~ 173 (987)
...|.|
T Consensus 340 ---p~ci~f 345 (345)
T PF10282_consen 340 ---PVCIVF 345 (345)
T ss_dssp ---EEEEEE
T ss_pred ---CEEEeC
No 433
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=32.14 E-value=1.8e+02 Score=32.41 Aligned_cols=68 Identities=19% Similarity=0.315 Sum_probs=0.0
Q ss_pred EeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCe-E
Q 001978 116 VAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTR-L 194 (987)
Q Consensus 116 Vaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~r-l 194 (987)
+-|+.+...+. .-+|+||++| ||...+.... ..+.++.+. .+|+.+++. .+.+.+++.+..++ |
T Consensus 3 ~~~~~~~~~~~--~~lL~GTe~G-ly~~~~~~~~------~~~~kl~~~-~~v~q~~v~-----~~~~lLi~Lsgk~~~L 67 (302)
T smart00036 3 AKWNHPITCDG--KWLLVGTEEG-LYVLNISDQP------GTLEKLIGR-RSVTQIWVL-----EENNVLLMISGKKPQL 67 (302)
T ss_pred ceEccccccCC--cEEEEEeCCc-eEEEEcccCC------CCeEEecCc-CceEEEEEE-----hhhCEEEEEeCCcceE
Q ss_pred EEEe
Q 001978 195 YSFT 198 (987)
Q Consensus 195 y~f~ 198 (987)
|.+.
T Consensus 68 ~~~~ 71 (302)
T smart00036 68 YSHP 71 (302)
T ss_pred EEEE
No 434
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=32.08 E-value=73 Score=33.11 Aligned_cols=153 Identities=12% Similarity=0.170 Sum_probs=70.2
Q ss_pred HhHHHHHHHHHHHhcCCHHHHHHHHHhhcC---CCChHHHHH-H----hcCcChHHHHHHHHHHHhhccCCchHHHHHHH
Q 001978 390 RDQVYLVQAEAAFATKDFHRAASFYAKINY---ILSFEEITL-K----FISVSEQDALRTFLLRKLDNLAKDDKCQITMI 461 (987)
Q Consensus 390 ~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~---~~~~E~v~l-k----Fl~~~~~~~L~~YL~~kl~~l~~~~~~q~~lL 461 (987)
-..-+...|..++.+|+|.+|++.|.+... ..++..-+. . +...++...=...+..-+..-+.+... .-.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~--~~A 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA--DYA 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH--HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--hhH
Confidence 445677889999999999999999998761 123333222 1 222333322222222222222322221 111
Q ss_pred HHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHcCChhHHHHHHHh-HhhHHHH
Q 001978 462 STWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASL-KEQHEIV 540 (987)
Q Consensus 462 ~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~-~~dy~~l 540 (987)
.-|+...+........ ..+.......+....|+.|+.++.+.--...+-..|.. +-+. .+.--.+
T Consensus 82 ~Y~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~---------l~~~la~~e~~i 147 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAE---------LRNRLAEHELYI 147 (203)
T ss_dssp HHHHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 1222222322222110 00000123445567889999888754222222221111 1111 1222246
Q ss_pred HHHHHhcccHHHHHHHHh
Q 001978 541 VHHYIQQGEAKKALQMLR 558 (987)
Q Consensus 541 l~~yi~~~~~~~AL~~l~ 558 (987)
..+|...|.|..|+.-..
T Consensus 148 a~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHHCTT-HHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHH
Confidence 789999999999887554
No 435
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=32.02 E-value=17 Score=24.56 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=8.9
Q ss_pred cccccchhhhh
Q 001978 835 DCGVCRRKILV 845 (987)
Q Consensus 835 ~C~~C~k~L~~ 845 (987)
.|..|++.+..
T Consensus 2 ~CP~C~~~V~~ 12 (26)
T PF10571_consen 2 TCPECGAEVPE 12 (26)
T ss_pred cCCCCcCCchh
Confidence 68889888766
No 436
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.45 E-value=6.5e+02 Score=27.23 Aligned_cols=146 Identities=12% Similarity=0.114 Sum_probs=89.7
Q ss_pred EeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC-Cceecc
Q 001978 29 AGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS-KPRVLS 106 (987)
Q Consensus 29 v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~-k~k~L~ 106 (987)
|-+..+..+.=+|+|-.+|. .|+.+..+.=+ ...|.+.-..|.--.|+.++. |+|..-.++.+.+ |.-.+
T Consensus 115 ~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh-----~~~Iy~a~~sp~~~nlfas~S--gd~~l~lwdvr~~gk~~~i- 186 (311)
T KOG0277|consen 115 VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH-----NSCIYQAAFSPHIPNLFASAS--GDGTLRLWDVRSPGKFMSI- 186 (311)
T ss_pred ccceeEEeeccCCceEeecCCCCcceEeecCC-----ccEEEEEecCCCCCCeEEEcc--CCceEEEEEecCCCceeEE-
Confidence 44455666656699999999 88888776443 467888888898767777664 3666656665554 22222
Q ss_pred CCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEE
Q 001978 107 KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYV 186 (987)
Q Consensus 107 klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i 186 (987)
...+..|.|.-|++.. ..-+..|..++.|+-..|-.- -..|++|.+-.-.|..|.+... ..-+
T Consensus 187 ~ah~~Eil~cdw~ky~-----~~vl~Tg~vd~~vr~wDir~~------r~pl~eL~gh~~AVRkvk~Sph------~~~l 249 (311)
T KOG0277|consen 187 EAHNSEILCCDWSKYN-----HNVLATGGVDNLVRGWDIRNL------RTPLFELNGHGLAVRKVKFSPH------HASL 249 (311)
T ss_pred EeccceeEeecccccC-----CcEEEecCCCceEEEEehhhc------cccceeecCCceEEEEEecCcc------hhhH
Confidence 2345689999999543 224555677888877666321 1235666543334777776532 2334
Q ss_pred EEEC----CCeEEEEec
Q 001978 187 MAVT----PTRLYSFTG 199 (987)
Q Consensus 187 ~ast----~~rly~f~g 199 (987)
+||. .+|+..+.-
T Consensus 250 LaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPER 266 (311)
T ss_pred hhhccccceEEeccccc
Confidence 4444 456665543
No 438
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=31.32 E-value=52 Score=37.62 Aligned_cols=49 Identities=14% Similarity=0.318 Sum_probs=39.6
Q ss_pred HHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.|+..|+|++|+..++... .....+...|..++..|+|++|...|.+..
T Consensus 45 ~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al 97 (356)
T PLN03088 45 ANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4788899999999876422 234567888999999999999999988775
No 439
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=31.28 E-value=85 Score=21.70 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 392 QVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 392 ~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++...|.-++..|+|++|...|.+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 356678999999999999999998875
No 440
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=31.22 E-value=1e+03 Score=32.14 Aligned_cols=124 Identities=10% Similarity=0.133 Sum_probs=69.3
Q ss_pred HHHHhHhhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHhHChHHHHHHHHcCC--CCCC---Ccchh
Q 001978 529 FFASLKEQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIMLDAYETVESWMTTN--NLNP---RKLIP 599 (987)
Q Consensus 529 ~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~----~~~~~li~k~~~~Ll~~~p~~ti~~l~~~~--~ld~---~~lip 599 (987)
.|+.-..=|..+..+|..-+++++|-++|..+ ......+..|+..||.++..++..-++... .++- ..+|.
T Consensus 1525 qycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1525 QYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred HhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 33333344566788999999999998887532 322578889999999999877777665431 2221 12222
Q ss_pred hh--hhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHH
Q 001978 600 AM--MRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQC 658 (987)
Q Consensus 600 ~L--~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~ 658 (987)
.+ +.|-. -+++....-+|.++...+. -.++|+-|+.+=.++.+.+.+...++.
T Consensus 1605 kfAqLEFk~-----GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1605 KFAQLEFKY-----GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred HHHHHHhhc-----CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 11 11100 1223344455555554432 346677676666655544444444443
No 441
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=30.90 E-value=17 Score=28.81 Aligned_cols=36 Identities=31% Similarity=0.585 Sum_probs=24.2
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEE-cCCChhHHHhHHH
Q 001978 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVF-PCGHAFHAQCLIA 881 (987)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvF-pCgH~fH~~CL~~ 881 (987)
.....|.+|++.|++.+ + +-+.- -|+-.+|.+|+..
T Consensus 9 ~~~~~C~~C~~~i~g~~---~------------~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLG---K------------QGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp SSTEB-TTSSSBECSSS---S------------CEEEETTTT-EEETTGGCT
T ss_pred CCCCCCcccCcccCCCC---C------------CeEEECCCCChHhhhhhhh
Confidence 45679999999996622 2 33333 4999999999864
No 442
>PF11571 Med27: Mediator complex subunit 27; InterPro: IPR021627 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. The ubiquitous expression of Med27 mRNA suggests a universal requirement for Med27 in transcriptional initiation. Loss of Crsp34/Med27 decreases amacrine cell number, but increases the number of rod photoreceptor cells [].
Probab=30.70 E-value=20 Score=32.21 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=23.1
Q ss_pred cccccccccccccchhhhhcccccccccccCCCCCCCCEEEE----cCCChhHHHh
Q 001978 827 YAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVF----PCGHAFHAQC 878 (987)
Q Consensus 827 ~~~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvF----pCgH~fH~~C 878 (987)
|..+. .++|..|||-|...+ - + |=+.+ ...++||..|
T Consensus 49 Y~~lf-s~pC~~C~klL~~~~---~----------L-PP~~r~~~~~~~~ayH~~C 89 (90)
T PF11571_consen 49 YRNLF-STPCKKCGKLLSSKA---F----------L-PPVRRPKDFRSWEAYHEGC 89 (90)
T ss_pred Hhhhc-cchhhHHHhHhhhcc---c----------C-CCeeecccCCCCcccCccc
Confidence 33443 579999999993311 1 1 33333 4468999999
No 443
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=30.65 E-value=1.1e+02 Score=33.60 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=43.5
Q ss_pred HhhcCCCceeEEEEeCCEEEEEecC--CeEEEEeCCCCCc------eeeEcC-------CCCCCccceeEE-EeCCCCC-
Q 001978 16 YAAKGRGVITCMSAGNDVIVLGTSK--GWLIRHDFGAGDS------YDIDLS-------AGRPGEQSIHKV-FVDPGGS- 78 (987)
Q Consensus 16 ~~~~~~~~i~~~~v~nn~l~~~~~~--g~l~ridl~~~~~------~~~~l~-------~~~~~~~~i~~i-~lDp~G~- 78 (987)
.-....+.||++-....=+|+|+.. |+|..+--....- .+++-+ ++-.-.++|..| |+||+|.
T Consensus 21 ~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 21 NSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred ccccccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence 3344557899998888778888876 9999885422221 122221 111113567666 8899875
Q ss_pred eEEEEee
Q 001978 79 HCIATIV 85 (987)
Q Consensus 79 hlli~~~ 85 (987)
|.+++|+
T Consensus 101 hFLlstN 107 (460)
T COG5170 101 HFLLSTN 107 (460)
T ss_pred eEEEecC
Confidence 7788777
No 444
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=30.57 E-value=4.9e+02 Score=29.92 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=35.3
Q ss_pred HHHHchhhHHHHHHhcCC----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
++++.+|+|+.|..-... ...-..|++...+.++..|+|.+.-.+..+..
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ 214 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLR 214 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 558888888888765432 22345677888888888888888877766653
No 445
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=30.28 E-value=1.4e+02 Score=20.67 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=20.8
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC
Q 001978 24 ITCMSAGNDVIVLGTSKGWLIRHDF 48 (987)
Q Consensus 24 i~~~~v~nn~l~~~~~~g~l~ridl 48 (987)
|+++++..+..+..+.+|.|+-+--
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE-
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcC
Confidence 6789999999999999999998743
No 446
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=30.23 E-value=61 Score=26.88 Aligned_cols=49 Identities=18% Similarity=0.311 Sum_probs=37.4
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+...+++++|+++.+.. .....+....|..++..|++.+|...+.+..
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 43 AYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 366779999999987531 1223677888999999999999998887764
No 447
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=30.01 E-value=84 Score=23.55 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 393 VYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 393 V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
+...+|..+...|++++|.+.|.+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56788999999999999999998876
No 448
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=29.85 E-value=8e+02 Score=27.14 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=88.8
Q ss_pred ceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec-C
Q 001978 23 VITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA-K 98 (987)
Q Consensus 23 ~i~~~~v~--nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~-~ 98 (987)
+|.||.-+ .+-++=|..+|+|+.||. ..+.+.-|++| ..=|--.-..|+|..+...-- ++-..-|--. .
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~-----s~WVMtCA~sPSg~~VAcGGL--dN~Csiy~ls~~ 129 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP-----SSWVMTCAYSPSGNFVACGGL--DNKCSIYPLSTR 129 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC-----ceeEEEEEECCCCCeEEecCc--CceeEEEecccc
Confidence 46666555 457788889999999999 88888888887 244555556799985543211 1222233222 1
Q ss_pred --CCCceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 99 --WSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 99 --~~k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
.-.+++-..+.| ..+.|.-|.++ +.||.|+-+...-.-.|+.+ +++..+.+-.+-|.+|.+.
T Consensus 130 d~~g~~~v~r~l~gHtgylScC~f~dD-------~~ilT~SGD~TCalWDie~g-------~~~~~f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 130 DAEGNVRVSRELAGHTGYLSCCRFLDD-------NHILTGSGDMTCALWDIETG-------QQTQVFHGHTGDVMSLSLS 195 (343)
T ss_pred cccccceeeeeecCccceeEEEEEcCC-------CceEecCCCceEEEEEcccc-------eEEEEecCCcccEEEEecC
Confidence 111122222334 47888888743 37998888877766666654 2222333323558888875
Q ss_pred eeccCCCceEEEEEECCCeEEEEec
Q 001978 175 TASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
. ++.+.+|-.+....-+-|.-
T Consensus 196 p----~~~ntFvSg~cD~~aklWD~ 216 (343)
T KOG0286|consen 196 P----SDGNTFVSGGCDKSAKLWDV 216 (343)
T ss_pred C----CCCCeEEecccccceeeeec
Confidence 2 23345555555555555653
No 449
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.51 E-value=2.2e+02 Score=30.38 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=59.1
Q ss_pred HHchhhHHHHHHhcC----Cch--hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc-----CCCChHHHHHHhcCcChHHHH
Q 001978 371 YLDMKEYAAALANCR----DPL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN-----YILSFEEITLKFISVSEQDAL 439 (987)
Q Consensus 371 ll~~~~fe~Al~~~~----~~~--~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~-----~~~~~E~v~lkFl~~~~~~~L 439 (987)
||.+|+|++|++..+ +|. +....+..-|-=-+..|+++.|...|.++. .-..+.+.+..-++.++.-.-
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999998854 343 456677777888888999999999999886 123445555555666777667
Q ss_pred HHHHHHHhhccC
Q 001978 440 RTFLLRKLDNLA 451 (987)
Q Consensus 440 ~~YL~~kl~~l~ 451 (987)
..|+.....+..
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 777776655554
No 450
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.47 E-value=2.7e+02 Score=31.70 Aligned_cols=79 Identities=16% Similarity=0.105 Sum_probs=55.1
Q ss_pred CCEEEEEecCCeEEEEeC--CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccC-
Q 001978 31 NDVIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSK- 107 (987)
Q Consensus 31 nn~l~~~~~~g~l~ridl--~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~k- 107 (987)
++.++-+|+.|.|-.+|. +.-.|..|++. ...|+.+-++|.|..+++... .|+..-+..+..+ .+.-
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~-----E~~is~~~l~p~gn~Iy~gn~---~g~l~~FD~r~~k--l~g~~ 285 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFL-----ENPISSTGLTPSGNFIYTGNT---KGQLAKFDLRGGK--LLGCG 285 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccc-----cCcceeeeecCCCcEEEEecc---cchhheecccCce--eeccc
Confidence 568888999999999999 33447777765 468999999999988777665 5776655544332 2222
Q ss_pred CCCc--eEEEEeec
Q 001978 108 LKGL--VVNAVAWN 119 (987)
Q Consensus 108 lkg~--~i~sVaw~ 119 (987)
++|+ .|++|.-.
T Consensus 286 ~kg~tGsirsih~h 299 (412)
T KOG3881|consen 286 LKGITGSIRSIHCH 299 (412)
T ss_pred cCCccCCcceEEEc
Confidence 4443 67777776
No 451
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=29.34 E-value=29 Score=40.30 Aligned_cols=32 Identities=25% Similarity=0.627 Sum_probs=25.7
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
..|..|+-+-. ..++-.|+|.|..-|+..++.
T Consensus 537 ~~C~lc~d~ae-------------------d~i~s~ChH~FCrlCi~eyv~ 568 (791)
T KOG1002|consen 537 VECGLCHDPAE-------------------DYIESSCHHKFCRLCIKEYVE 568 (791)
T ss_pred eeecccCChhh-------------------hhHhhhhhHHHHHHHHHHHHH
Confidence 57999997643 346668999999999998874
No 452
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=29.28 E-value=3.4e+02 Score=31.69 Aligned_cols=82 Identities=15% Similarity=0.274 Sum_probs=47.8
Q ss_pred CceEEEEeecCCCCCC-----CCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCC---
Q 001978 110 GLVVNAVAWNRQQITE-----ASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNG--- 181 (987)
Q Consensus 110 g~~i~sVaw~~~~~~~-----~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~--- 181 (987)
|-.|+|+.|-+-.... .+-.-|++|++.|.|..+.-.+. .-+.+. +.+ +||.+|.....+....
T Consensus 56 ~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte~G~----LL~~Q~--~h~--~pV~~ik~~~~~~~~~~~~ 127 (415)
T PF14655_consen 56 GECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTENGV----LLLSQL--LHE--EPVLKIKCRSTKIPRHPGD 127 (415)
T ss_pred CCEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEeccch----HHHHHh--cCc--cceEEEEecccCCCCCCcc
Confidence 3589999998442211 12346999999999988876442 112222 343 6799999976542211
Q ss_pred --ceEEEEEECCCeEEEEecCC
Q 001978 182 --TRYYVMAVTPTRLYSFTGFG 201 (987)
Q Consensus 182 --~~~~i~ast~~rly~f~g~~ 201 (987)
....|+ - ++.+..+.|..
T Consensus 128 ~~eel~il-y-~~~v~~Idg~s 147 (415)
T PF14655_consen 128 SSEELSIL-Y-PSAVVIIDGFS 147 (415)
T ss_pred cccEEEEE-E-CCEEEEEecHH
Confidence 122232 2 36677677743
No 453
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=29.14 E-value=7e+02 Score=28.51 Aligned_cols=108 Identities=17% Similarity=0.214 Sum_probs=60.9
Q ss_pred EeCCEEEEEecCCeEEEEeCCCCCce---eeEcC-CC------CCCccceeEEEeCCCCCeEEEEeecC-------CCcc
Q 001978 29 AGNDVIVLGTSKGWLIRHDFGAGDSY---DIDLS-AG------RPGEQSIHKVFVDPGGSHCIATIVGS-------GGAE 91 (987)
Q Consensus 29 v~nn~l~~~~~~g~l~ridl~~~~~~---~~~l~-~~------~~~~~~i~~i~lDp~G~hlli~~~~~-------~~g~ 91 (987)
..+..+|+..+ |+|+.||+....+. .+.+. .. +. +-+.-+-++|.|.+++|.+... +.++
T Consensus 204 ~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP--~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~ 280 (352)
T TIGR02658 204 KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP--GGWQQVAYHRARDRIYLLADQRAKWTHKTASRF 280 (352)
T ss_pred CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCC--CcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence 35667777777 99999998222221 11211 00 11 2223388999999999977411 1134
Q ss_pred EEEEecCCCCceeccCC-CCceEEEEeecCCCCCCCCcceEEEEcCC--CcEEEEEecc
Q 001978 92 TFYTHAKWSKPRVLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDT--GQLHEMAVDE 147 (987)
Q Consensus 92 ~~Y~~~~~~k~k~L~kl-kg~~i~sVaw~~~~~~~~st~~iLiGt~~--G~i~e~~i~~ 147 (987)
+.-+...+.|. +.++ =|..+.+|+++++. ++.|..|+. |.|.......
T Consensus 281 V~ViD~~t~kv--i~~i~vG~~~~~iavS~Dg------kp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 281 LFVVDAKTGKR--LRKIELGHEIDSINVSQDA------KPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEEEECCCCeE--EEEEeCCCceeeEEECCCC------CeEEEEeCCCCCcEEEEECcC
Confidence 55566555442 2222 27789999998432 247776663 6566555443
No 454
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=29.03 E-value=81 Score=29.75 Aligned_cols=49 Identities=18% Similarity=0.107 Sum_probs=38.1
Q ss_pred HHHchhhHHHHHHhcCC----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|..+.+. ...-..++...|.-+...|++++|.+.|.+..
T Consensus 60 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 60 CCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778999999987653 12234667788999999999999999987765
No 455
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=28.79 E-value=7.1e+02 Score=26.24 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=36.7
Q ss_pred eEEEE-eCCEEEEEecCCeEEEEeCCCCC-ceeeEcCCCCCCccceeEEEeCCCCCeEEEE
Q 001978 25 TCMSA-GNDVIVLGTSKGWLIRHDFGAGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT 83 (987)
Q Consensus 25 ~~~~v-~nn~l~~~~~~g~l~ridl~~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~ 83 (987)
.++.. .++.|++|+.++.|-.+|+..+. .-...++ +-++|.++--.+.|.+++.-
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS----TVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc----chhheeEEEeccccceEEEE
Confidence 34444 44999999999999999994333 2223344 13677777777889876543
No 456
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=28.73 E-value=6.3e+02 Score=28.80 Aligned_cols=115 Identities=15% Similarity=0.216 Sum_probs=63.8
Q ss_pred ceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC--CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEE
Q 001978 67 SIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS--KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMA 144 (987)
Q Consensus 67 ~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~--k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~ 144 (987)
.|..+-=.|+-.-+|.+.. .+|..-.+..++. |+-.+.|-.+-+|..|.||... .-+.-|..+|.+-...
T Consensus 259 SVEDLqWSptE~~vfaScS--~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~------~lLasG~DdGt~~iwD 330 (440)
T KOG0302|consen 259 SVEDLQWSPTEDGVFASCS--CDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE------PLLASGGDDGTLSIWD 330 (440)
T ss_pred chhhhccCCccCceEEeee--cCceEEEEEecCCCccceeEeeccCCceeeEEccCCc------ceeeecCCCceEEEEE
Confidence 3444444566555555443 2666655554443 4555667778899999999432 1356688889776655
Q ss_pred eccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEEC-CCeEEEEe
Q 001978 145 VDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT-PTRLYSFT 198 (987)
Q Consensus 145 i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast-~~rly~f~ 198 (987)
|-.-+ ..+-+-+ |+-.. +||++|.|... +.. ++.|+. ...+-.|.
T Consensus 331 LR~~~-~~~pVA~-fk~Hk--~pItsieW~p~----e~s-~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 331 LRQFK-SGQPVAT-FKYHK--APITSIEWHPH----EDS-VIAASGEDNQITIWD 376 (440)
T ss_pred hhhcc-CCCccee-EEecc--CCeeEEEeccc----cCc-eEEeccCCCcEEEEE
Confidence 53221 1111112 34443 67999999742 222 333333 55566564
No 457
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.55 E-value=1.1e+03 Score=28.56 Aligned_cols=48 Identities=13% Similarity=0.273 Sum_probs=35.4
Q ss_pred HHchhhHHHHHHhcCCchh-HhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRDPLQ-RDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~~~~-~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+..++-|+|+...+.-.. -+.++..+|+.++..|+|++|..+|....
T Consensus 89 ~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~ 137 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLA 137 (652)
T ss_pred HHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5556677777766553211 23578899999999999999999998773
No 458
>KOG4121 consensus Nuclear pore complex, Nup133 component (sc Nup133) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.54 E-value=3.7e+02 Score=34.58 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHHHHHhccc
Q 001978 510 DEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGE 549 (987)
Q Consensus 510 d~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~ 549 (987)
++....+.|.+-|..+.|+..|++-+||+.++...-+..+
T Consensus 774 ~Rrdwlq~L~~vg~~e~Ai~iAEKY~DfqsLV~lcdqld~ 813 (1128)
T KOG4121|consen 774 NRRDWLQVLCKVGQYEQAIQIAEKYKDFQSLVQLCDQLDQ 813 (1128)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhhhHHHHHHHHHhhCc
Confidence 4455678888999999999999999999999976655443
No 459
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=28.53 E-value=27 Score=28.45 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=16.2
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEEcC
Q 001978 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPC 870 (987)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpC 870 (987)
..|..||..|-. + ...++|+|
T Consensus 10 ~~CtSCg~~i~p-----~-----------e~~v~F~C 30 (61)
T COG2888 10 PVCTSCGREIAP-----G-----------ETAVKFPC 30 (61)
T ss_pred ceeccCCCEecc-----C-----------CceeEeeC
Confidence 589999999944 2 17899985
No 460
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=28.28 E-value=3.9e+02 Score=30.68 Aligned_cols=80 Identities=10% Similarity=-0.026 Sum_probs=51.6
Q ss_pred CCEEEEEe-cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC-ceeccC
Q 001978 31 NDVIVLGT-SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK-PRVLSK 107 (987)
Q Consensus 31 nn~l~~~~-~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k-~k~L~k 107 (987)
.|++++.. .+|.|-.||. ....+.+|+... ..-..+...|.|+++.++.. +|...-+...+.+ .+.+.
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-----~~h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~~v~~i~- 75 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-----APHAGLKFSPDGRYLYVANR---DGTVSVIDLATGKVVATIK- 75 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-----TEEEEEE-TT-SSEEEEEET---TSEEEEEETTSSSEEEEEE-
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-----CceeEEEecCCCCEEEEEcC---CCeEEEEECCcccEEEEEe-
Confidence 35666655 4799999999 655567776541 22234667899999999987 7888788876665 33443
Q ss_pred CCCceEEEEeecC
Q 001978 108 LKGLVVNAVAWNR 120 (987)
Q Consensus 108 lkg~~i~sVaw~~ 120 (987)
-|..-.+|++.+
T Consensus 76 -~G~~~~~i~~s~ 87 (369)
T PF02239_consen 76 -VGGNPRGIAVSP 87 (369)
T ss_dssp --SSEEEEEEE--
T ss_pred -cCCCcceEEEcC
Confidence 366788888873
No 461
>PRK01029 tolB translocation protein TolB; Provisional
Probab=28.23 E-value=3e+02 Score=32.35 Aligned_cols=91 Identities=15% Similarity=0.171 Sum_probs=54.8
Q ss_pred eeEEEEeC--CEEEEEe-cC--CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 24 ITCMSAGN--DVIVLGT-SK--GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 24 i~~~~v~n--n~l~~~~-~~--g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
+.+.+.+. +.|++.. .+ ..|+++|+...+... +... ...+......|.|.+++.++...+.+..|.++..
T Consensus 329 ~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~--Lt~~---~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ--LTTS---PENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE--ccCC---CCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 34445543 4555443 32 368888983333322 2211 1234556668999998887663344667777877
Q ss_pred CCCceeccCCCCceEEEEeecC
Q 001978 99 WSKPRVLSKLKGLVVNAVAWNR 120 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~sVaw~~ 120 (987)
..+.+.|.+-.| .+...+|.+
T Consensus 404 ~g~~~~Lt~~~g-~~~~p~Ws~ 424 (428)
T PRK01029 404 TKKTRKIVIGSG-EKRFPSWGA 424 (428)
T ss_pred CCCEEEeecCCC-cccCceecC
Confidence 777777875443 678899984
No 462
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=28.08 E-value=93 Score=38.17 Aligned_cols=72 Identities=28% Similarity=0.298 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh--cCHHHHHHHhhccCCC
Q 001978 649 DSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ--VDPELAMAEADKVEDD 725 (987)
Q Consensus 649 ~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~--~di~lA~~~~~~~~~d 725 (987)
..++.+||.+....+. . ..--+.-|..+..++.+..++++.+ .-|..++||+++++ +|+.+|+.+|.-.++|
T Consensus 435 ~~k~~~Fl~ndF~~~r-w---r~AAlKNAyaLlsk~Ry~~AAaFFL-Lag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d 508 (631)
T PF12234_consen 435 QQKMAKFLSNDFTEPR-W---RTAALKNAYALLSKHRYEYAAAFFL-LAGSLKDAVNVCLRQLNDPQLAIAIARLYEGD 508 (631)
T ss_pred cHHHHHHHhhcCCChH-H---HHHHHHhHHHHHhcccHHHHHHHHH-hcccHHHHHHHHHHHccChhHHHHHHHHHcCC
Confidence 4789999986521000 0 0112344666777777655554433 44789999999999 8999999999655433
No 463
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=27.95 E-value=1e+03 Score=30.88 Aligned_cols=114 Identities=12% Similarity=0.129 Sum_probs=60.9
Q ss_pred HHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHhHChHHHHHHH-------HcCCCC-CCCcchhhhhhcCC
Q 001978 539 IVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIMLDAYETVESW-------MTTNNL-NPRKLIPAMMRYSS 606 (987)
Q Consensus 539 ~ll~~yi~~~~~~~AL~~l~~~----~~~~~li~k~~~~Ll~~~p~~ti~~l-------~~~~~l-d~~~lip~L~~~~~ 606 (987)
.+..+|-+.|++++|..++.+. ++....+-.||-.+...+-+++.++. ++.... +...+-+-+..+.+
T Consensus 121 ~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~ 200 (906)
T PRK14720 121 TLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNS 200 (906)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCc
Confidence 4778888889999998888653 22235555666555444555444443 332211 11122333333332
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCC---hHHHHHHHHHh
Q 001978 607 EPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQED---DSALLRFLQCK 659 (987)
Q Consensus 607 ~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~---~~kLl~fL~~~ 659 (987)
.+-+...++++.+....+ ...++.++.-||-.+.. -.+.+.+|+..
T Consensus 201 -----~d~d~f~~i~~ki~~~~~--~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 201 -----DDFDFFLRIERKVLGHRE--FTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred -----ccchHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 133456677776665433 34566666666655432 23566666654
No 464
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=27.88 E-value=83 Score=25.77 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 391 DQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 391 ~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..+....|..++..|+|++|...|.+..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai 30 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAI 30 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567889999999999999999999886
No 465
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=27.64 E-value=84 Score=30.38 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcCCCChH
Q 001978 392 QVYLVQAEAAFATKDFHRAASFYAKINYILSFE 424 (987)
Q Consensus 392 ~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~~~E 424 (987)
.+..+.++.+...|+|++|.+.+.+.....|+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~ 95 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYD 95 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC
Confidence 445556666666666666666666554223443
No 466
>COG2926 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.52 E-value=1.7e+02 Score=26.22 Aligned_cols=57 Identities=14% Similarity=0.280 Sum_probs=36.7
Q ss_pred cCcccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001978 766 LKIEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISA 822 (987)
Q Consensus 766 l~i~dlL~~~p~~~~I~~~Kd~L~~~L~~y~~~i~~l~~~m~~~~~~~~~l~~~i~~ 822 (987)
+.+..+..++.++|.+.+++..|..+=.+|..++...-..=.+..+.-.++.+.+..
T Consensus 43 lLLdNL~~Yik~~Ms~eei~~II~~MksDYEdRVDDyiIknAelskerReiskk~K~ 99 (109)
T COG2926 43 LLLDNLSDYIKPDMSIEEIQGIIESMKSDYEDRVDDYIIKNAELSKERREISKKLKA 99 (109)
T ss_pred HHHHhHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 334456667888999999999999999999888766542222233333344444433
No 467
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=27.43 E-value=7.3e+02 Score=27.95 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=26.1
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC-CCCCc
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDS 53 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~ 53 (987)
+++-++.++||+|+--..+.++-.||+ .|..+
T Consensus 278 eaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~i 310 (499)
T KOG0281|consen 278 EAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDI 310 (499)
T ss_pred ceeEEEEEeCCEEEEecCCceeEEEeccCchHH
Confidence 468888999999988888888888888 77653
No 468
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=27.38 E-value=1.8e+02 Score=29.62 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=38.6
Q ss_pred hhHHHHHHhcCCch---hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc-CCCChHHHHHH
Q 001978 375 KEYAAALANCRDPL---QRDQVYLVQAEAAFATKDFHRAASFYAKIN-YILSFEEITLK 429 (987)
Q Consensus 375 ~~fe~Al~~~~~~~---~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~-~~~~~E~v~lk 429 (987)
.+.+..++-+++.. .....+...|+|+.+-|++++|.+.|.++. .......++-+
T Consensus 17 ~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~ 75 (177)
T PF10602_consen 17 EKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDM 75 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 45556666655433 345667799999999999999999999986 22455544443
No 469
>PRK01029 tolB translocation protein TolB; Provisional
Probab=26.77 E-value=9.1e+02 Score=28.25 Aligned_cols=114 Identities=11% Similarity=0.036 Sum_probs=63.5
Q ss_pred eEEEEeC--CEEEEEe-cCC--eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 25 TCMSAGN--DVIVLGT-SKG--WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 25 ~~~~v~n--n~l~~~~-~~g--~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
++.+.+. +.|++.. .+| .|+++++++.......+... ...+...-..|.|.+++.++...+....|-++...
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~---~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK---YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC---CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 4555554 3555554 344 58888873221111112111 12344556689999998887632234455566666
Q ss_pred CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcC---CCcEEEEEeccC
Q 001978 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD---TGQLHEMAVDEK 148 (987)
Q Consensus 100 ~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~---~G~i~e~~i~~~ 148 (987)
.+.+.|..- ...+.+++|.++ .+.|+..+. .+.||...++.+
T Consensus 361 g~~~~Lt~~-~~~~~~p~wSpD------G~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 361 GRDYQLTTS-PENKESPSWAID------SLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred CCeEEccCC-CCCccceEECCC------CCEEEEEECCCCCceEEEEECCCC
Confidence 677888743 346788999843 224554432 256777776553
No 470
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=26.70 E-value=32 Score=36.37 Aligned_cols=30 Identities=37% Similarity=0.792 Sum_probs=24.5
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHH
Q 001978 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIA 881 (987)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~ 881 (987)
.|..|++.=.. . +|+.-.|+|+|-..|...
T Consensus 5 hCn~C~~~~~~-----~------------~f~LTaC~HvfC~~C~k~ 34 (233)
T KOG4739|consen 5 HCNKCFRFPSQ-----D------------PFFLTACRHVFCEPCLKA 34 (233)
T ss_pred EeccccccCCC-----C------------ceeeeechhhhhhhhccc
Confidence 58888865443 4 999999999999999864
No 471
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=26.70 E-value=9.6e+02 Score=27.06 Aligned_cols=171 Identities=18% Similarity=0.221 Sum_probs=91.0
Q ss_pred hhHHHHHHchhhHHHHHHhcCC---------chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc--CCC-ChHHHHHH--h
Q 001978 365 RDMWKVYLDMKEYAAALANCRD---------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YIL-SFEEITLK--F 430 (987)
Q Consensus 365 ~~~W~~ll~~~~fe~Al~~~~~---------~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~--~~~-~~E~v~lk--F 430 (987)
++--.+|-.-..|++|++.|+. ..+..+-+...|+.+....+++.|...+.+.. +.. ---.|++- +
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~ 224 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVE 224 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH
Confidence 4445667777899999998862 12456778888999999999999988888764 111 11122221 2
Q ss_pred cCcChHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccc---
Q 001978 431 ISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKD--- 507 (987)
Q Consensus 431 l~~~~~~~L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~--- 507 (987)
+..++...-..-+..-+ ..+.....++..-|.++|- .+++. +++..||...-.
T Consensus 225 ~~~g~y~~AV~~~e~v~----eQn~~yl~evl~~L~~~Y~-~lg~~-------------------~~~~~fL~~~~~~~~ 280 (389)
T COG2956 225 LAKGDYQKAVEALERVL----EQNPEYLSEVLEMLYECYA-QLGKP-------------------AEGLNFLRRAMETNT 280 (389)
T ss_pred HhccchHHHHHHHHHHH----HhChHHHHHHHHHHHHHHH-HhCCH-------------------HHHHHHHHHHHHccC
Confidence 23333322222222211 1244445555556666664 23322 345556654322
Q ss_pred cCCHH-HHHHHHHHcCChhHHHHHHH-hH------hhHHHHHHHHHhc---ccHHHHHHHHhC
Q 001978 508 VLDEA-TTMKLLESYGRVEELVFFAS-LK------EQHEIVVHHYIQQ---GEAKKALQMLRK 559 (987)
Q Consensus 508 ~ld~~-tv~~ll~~~g~~e~~l~~a~-~~------~dy~~ll~~yi~~---~~~~~AL~~l~~ 559 (987)
..+.+ .++++++.+.-.+.+..+.. .. .=+.+++.|.+.+ |.+.+.|..|.+
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~ 343 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRD 343 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence 12322 46677666555555443332 21 2345566666643 345555555543
No 472
>PRK14574 hmsH outer membrane protein; Provisional
Probab=26.64 E-value=7.4e+02 Score=31.87 Aligned_cols=143 Identities=10% Similarity=0.054 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhhcccc---CCHHHHHHHHHHcCChhHHHHHHHhHhh------HHHH--HHHHHhcccHHHHHHHHhCC-
Q 001978 493 SIMREFRAFLSDCKDV---LDEATTMKLLESYGRVEELVFFASLKEQ------HEIV--VHHYIQQGEAKKALQMLRKP- 560 (987)
Q Consensus 493 ~~~~~l~~fl~~~~~~---ld~~tv~~ll~~~g~~e~~l~~a~~~~d------y~~l--l~~yi~~~~~~~AL~~l~~~- 560 (987)
...+.|++-++..... +. .+..++-..|..++++.+++..-+ +..+ ...|...|+|++|++++.+.
T Consensus 52 ~Al~~L~qaL~~~P~~~~av~--dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL 129 (822)
T PRK14574 52 PVLDYLQEESKAGPLQSGQVD--DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSL 129 (822)
T ss_pred HHHHHHHHHHhhCccchhhHH--HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445566655543321 11 223455567999999999887532 3334 45888999999999998754
Q ss_pred ---CCchhhHHhhHHHHH-hHChHHHHHHHHcCCCCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHH
Q 001978 561 ---AVPIDLQYKFAPDLI-MLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVH 636 (987)
Q Consensus 561 ---~~~~~li~k~~~~Ll-~~~p~~ti~~l~~~~~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ih 636 (987)
++..+.+.-.+...+ ...++++++.+.+....+|....-.++.|.... ......++..++.++...+.....+.
T Consensus 130 ~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~--~~~~~~AL~~~ekll~~~P~n~e~~~ 207 (822)
T PRK14574 130 KKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRA--TDRNYDALQASSEAVRLAPTSEEVLK 207 (822)
T ss_pred hhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHh--cchHHHHHHHHHHHHHhCCCCHHHHH
Confidence 232344432222222 245667777776655566652221112221100 01222488888888877665443333
Q ss_pred HHH
Q 001978 637 NLL 639 (987)
Q Consensus 637 n~l 639 (987)
+++
T Consensus 208 ~~~ 210 (822)
T PRK14574 208 NHL 210 (822)
T ss_pred HHH
Confidence 333
No 473
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=26.57 E-value=80 Score=30.79 Aligned_cols=49 Identities=10% Similarity=0.059 Sum_probs=38.9
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+...|+|++|+...+.. ..-...+...|..++..|++++|...|.+..
T Consensus 67 ~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 67 TWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467789999999986532 1234677788999999999999999998875
No 474
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.50 E-value=51 Score=37.38 Aligned_cols=37 Identities=27% Similarity=0.657 Sum_probs=27.1
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+..|++|--....+|. +..+.-.|||.|-.+|.++.+
T Consensus 4 g~tcpiclds~~~~g~--------------hr~vsl~cghlFgs~cie~wl 40 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGN--------------HRIVSLQCGHLFGSQCIEKWL 40 (463)
T ss_pred cccCceeeeeeeecCc--------------eEEeeecccccccHHHHHHHH
Confidence 5689999766655432 246666799999999998764
No 475
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=26.32 E-value=8.2e+02 Score=26.15 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=34.6
Q ss_pred HHHchhhHHHHHHhcCC-----c--hhHhHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 001978 370 VYLDMKEYAAALANCRD-----P--LQRDQVYLVQAEAAFATKDFHRAASFYAKI 417 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~--~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~ 417 (987)
.++++|+|++|++..+. | ..........|+.++..|+|.+|+..|.+-
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 46777899999888652 2 234455677888889999999888776544
No 476
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=26.21 E-value=7.4e+02 Score=26.74 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=68.6
Q ss_pred CceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe--
Q 001978 22 GVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH-- 96 (987)
Q Consensus 22 ~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~-- 96 (987)
-.++++-|+.+ ++.++-.+ .|.-+|. .-.-+..+++| ..|....|.|.- +.+||- |+-+|++
T Consensus 185 s~VtSlEvs~dG~ilTia~gs-sV~Fwdaksf~~lKs~k~P------~nV~SASL~P~k-~~fVaG-----ged~~~~kf 251 (334)
T KOG0278|consen 185 SPVTSLEVSQDGRILTIAYGS-SVKFWDAKSFGLLKSYKMP------CNVESASLHPKK-EFFVAG-----GEDFKVYKF 251 (334)
T ss_pred CCCcceeeccCCCEEEEecCc-eeEEeccccccceeeccCc------cccccccccCCC-ceEEec-----CcceEEEEE
Confidence 35788888755 44444444 5666777 55557788888 578889999987 788874 5555443
Q ss_pred -cCCCCceeccCCCCc--eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 97 -AKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 97 -~~~~k~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
.+.-.-+-.- -||+ +|-||-|.|+- + ..-.|+.+|.|-.-...+.
T Consensus 252 Dy~TgeEi~~~-nkgh~gpVhcVrFSPdG--E----~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 252 DYNTGEEIGSY-NKGHFGPVHCVRFSPDG--E----LYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred eccCCceeeec-ccCCCCceEEEEECCCC--c----eeeccCCCceEEEEEecCC
Confidence 2222111210 1453 89999999542 2 5778999998877666554
No 477
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.21 E-value=25 Score=29.54 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=24.7
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIA 881 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~ 881 (987)
++.|+.||...... ...+ .|....||+.+|.|--..
T Consensus 28 Sq~C~~CG~~~~~~-~~~r------------~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 28 SQTCPRCGHRNKKR-RSGR------------VFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred ccCccCcccccccc-cccc------------eEEcCCCCCEECcHHHHH
Confidence 57899999887661 1002 555566999999886543
No 478
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=26.14 E-value=9.3e+02 Score=26.74 Aligned_cols=105 Identities=14% Similarity=0.053 Sum_probs=64.2
Q ss_pred eCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCC-CCeEEEEeecCCCccEEEEecCCCCceeccC
Q 001978 30 GNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPG-GSHCIATIVGSGGAETFYTHAKWSKPRVLSK 107 (987)
Q Consensus 30 ~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~-G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~k 107 (987)
..+-+.-+.++|+|-.|+. ..+=+..+..+ +.+.+|+.+.+-|. -.|.+||-. +...|..+-+-.-+|..+.
T Consensus 359 dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~---~~d~~vnsv~~~PKnpeh~iVCNr---sntv~imn~qGQvVrsfsS 432 (508)
T KOG0275|consen 359 DGHHIISASSDGTVKVWHGKTTECLSTFKPL---GTDYPVNSVILLPKNPEHFIVCNR---SNTVYIMNMQGQVVRSFSS 432 (508)
T ss_pred CCCeEEEecCCccEEEecCcchhhhhhccCC---CCcccceeEEEcCCCCceEEEEcC---CCeEEEEeccceEEeeecc
Confidence 3456677788899999999 44445555544 24678999999885 789999987 5666666654433444332
Q ss_pred ---CCCceEEEEeecCCCCCCCCcce-EEEEcCCCcEEEEEeccC
Q 001978 108 ---LKGLVVNAVAWNRQQITEASTKE-IILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 108 ---lkg~~i~sVaw~~~~~~~~st~~-iLiGt~~G~i~e~~i~~~ 148 (987)
-+| +.-+.+.. + .|+ |-+-..+|.+|-.....+
T Consensus 433 GkREgG-dFi~~~lS-p------kGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 433 GKREGG-DFINAILS-P------KGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred CCccCC-ceEEEEec-C------CCcEEEEEccCcEEEEEEeecC
Confidence 123 33333444 1 223 334467787776666554
No 479
>PRK04043 tolB translocation protein TolB; Provisional
Probab=25.77 E-value=6.9e+02 Score=29.21 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred cCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEee
Q 001978 39 SKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAW 118 (987)
Q Consensus 39 ~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw 118 (987)
.+..|+++|+...+...+--. .+.....-..|.|.++++.....++++.|.++....+.++|+...+..+ +-.|
T Consensus 211 ~~~~Iyv~dl~tg~~~~lt~~-----~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~-~p~~ 284 (419)
T PRK04043 211 RKPTLYKYNLYTGKKEKIASS-----QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDV-NGNF 284 (419)
T ss_pred CCCEEEEEECCCCcEEEEecC-----CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccC-ccEE
Q ss_pred cCCCCCCCCcceEEEEcCCC---cEEEEEeccC
Q 001978 119 NRQQITEASTKEIILGTDTG---QLHEMAVDEK 148 (987)
Q Consensus 119 ~~~~~~~~st~~iLiGt~~G---~i~e~~i~~~ 148 (987)
.+ +.+.|+..++++ .||...++.+
T Consensus 285 SP------DG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 285 VE------DDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred CC------CCCEEEEEECCCCCceEEEEECCCC
No 480
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=25.38 E-value=1.3e+02 Score=34.94 Aligned_cols=72 Identities=21% Similarity=0.256 Sum_probs=51.5
Q ss_pred hHHHHHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc-----CCCChHHHHHHhcCcChH
Q 001978 366 DMWKVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN-----YILSFEEITLKFISVSEQ 436 (987)
Q Consensus 366 ~~W~~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~-----~~~~~E~v~lkFl~~~~~ 436 (987)
...++++..++-.+|+++....- .--.++..+|++|+.+|+|+.|.++..++. .-..|...+.-++..++.
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence 35677888888899998865321 225778899999999999999988887764 123455555566666654
Q ss_pred H
Q 001978 437 D 437 (987)
Q Consensus 437 ~ 437 (987)
+
T Consensus 285 e 285 (395)
T PF09295_consen 285 E 285 (395)
T ss_pred H
Confidence 4
No 481
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=25.36 E-value=1.1e+02 Score=30.41 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=33.4
Q ss_pred HHchhhHHHHHHhcCC-------chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRD-------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~-------~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
+..+|+|++|+...+. +.....++...|.-+...|++++|...|.+..
T Consensus 45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566788888776542 12234567778888888888888888877664
No 482
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=25.35 E-value=43 Score=36.08 Aligned_cols=33 Identities=24% Similarity=0.583 Sum_probs=25.3
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
-+|..|+..|.+ +.--=-|||.|...|+...++
T Consensus 275 LkCplc~~Llrn------------------p~kT~cC~~~fc~eci~~al~ 307 (427)
T COG5222 275 LKCPLCHCLLRN------------------PMKTPCCGHTFCDECIGTALL 307 (427)
T ss_pred ccCcchhhhhhC------------------cccCccccchHHHHHHhhhhh
Confidence 589999998887 222223999999999996543
No 483
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=25.19 E-value=37 Score=37.38 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=33.0
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhhcCC
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQCTN 888 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~~~~ 888 (987)
...|.+|-|...+ |-|++--|-+|...|...++.++.-
T Consensus 300 ~~~CpvClk~r~N------------------ptvl~vSGyVfCY~Ci~~Yv~~~~~ 337 (357)
T KOG0826|consen 300 REVCPVCLKKRQN------------------PTVLEVSGYVFCYPCIFSYVVNYGH 337 (357)
T ss_pred cccChhHHhccCC------------------CceEEecceEEeHHHHHHHHHhcCC
Confidence 4689999999888 8899999999999999999876543
No 484
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=25.17 E-value=1.1e+03 Score=27.09 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=42.5
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 001978 31 NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (987)
Q Consensus 31 nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (987)
++.+|++-.+|.|..||+ ....+.+++.- .....+-+.|.|++++++..- .+..--+.....
T Consensus 48 gr~~yv~~rdg~vsviD~~~~~~v~~i~~G------~~~~~i~~s~DG~~~~v~n~~--~~~v~v~D~~tl 110 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLATGKVVATIKVG------GNPRGIAVSPDGKYVYVANYE--PGTVSVIDAETL 110 (369)
T ss_dssp SSEEEEEETTSEEEEEETTSSSEEEEEE-S------SEEEEEEE--TTTEEEEEEEE--TTEEEEEETTT-
T ss_pred CCEEEEEcCCCeEEEEECCcccEEEEEecC------CCcceEEEcCCCCEEEEEecC--CCceeEeccccc
Confidence 478999999999999999 65656777653 345889999999999887641 355545554443
No 485
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=25.08 E-value=52 Score=36.24 Aligned_cols=30 Identities=23% Similarity=0.723 Sum_probs=22.6
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLI 880 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~ 880 (987)
.++.|.+|-..+.. ..+.||||-.---|..
T Consensus 60 en~~C~ICA~~~TY-------------------s~~~PC~H~~CH~Ca~ 89 (493)
T COG5236 60 ENMNCQICAGSTTY-------------------SARYPCGHQICHACAV 89 (493)
T ss_pred ccceeEEecCCceE-------------------EEeccCCchHHHHHHH
Confidence 34679999887765 2578999987777764
No 486
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=24.98 E-value=91 Score=21.32 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcccHHHHHHHHhCC
Q 001978 536 QHEIVVHHYIQQGEAKKALQMLRKP 560 (987)
Q Consensus 536 dy~~ll~~yi~~~~~~~AL~~l~~~ 560 (987)
-|+.++..|...|+++.|++++...
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4677889999999999999887643
No 487
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=24.89 E-value=1.6e+03 Score=30.50 Aligned_cols=77 Identities=17% Similarity=0.130 Sum_probs=47.0
Q ss_pred hHHHHHHhcCCchhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc-----CCCChHHHHHHhcCcChHHHHHHHHHHHhhcc
Q 001978 376 EYAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN-----YILSFEEITLKFISVSEQDALRTFLLRKLDNL 450 (987)
Q Consensus 376 ~fe~Al~~~~~~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~-----~~~~~E~v~lkFl~~~~~~~L~~YL~~kl~~l 450 (987)
=|+.|-++|. -..|+.+-...|-.-++|++|+++|.... ....|-.++-..+..++..+.+..|+.-|..+
T Consensus 1519 VFeRAcqycd----~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1519 VFERACQYCD----AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred HHHHHHHhcc----hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 3455555552 33556666666666677888887766554 11344444444556667777788888777777
Q ss_pred CCchHH
Q 001978 451 AKDDKC 456 (987)
Q Consensus 451 ~~~~~~ 456 (987)
++..+.
T Consensus 1595 Pk~eHv 1600 (1710)
T KOG1070|consen 1595 PKQEHV 1600 (1710)
T ss_pred chhhhH
Confidence 775444
No 488
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=24.52 E-value=1.8e+02 Score=23.54 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=17.3
Q ss_pred HHHHHHhcccHHHHHHHHhCCC
Q 001978 540 VVHHYIQQGEAKKALQMLRKPA 561 (987)
Q Consensus 540 ll~~yi~~~~~~~AL~~l~~~~ 561 (987)
+...|+..|++++|.+++.+..
T Consensus 31 la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 31 LAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHHHHHTT-HHHHHHHHHCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6678889999999999988763
No 489
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=24.48 E-value=1.9e+02 Score=35.32 Aligned_cols=99 Identities=10% Similarity=0.086 Sum_probs=62.0
Q ss_pred ceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEec
Q 001978 67 SIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (987)
Q Consensus 67 ~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (987)
.|.---+|.++.++.+.+. .|-+|-.++...+.+.++.--+..+++|.--.+ +.--+..||..|.|--+.+.
T Consensus 35 ~v~lTc~dst~~~l~~GsS---~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-----~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSS---AGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-----VEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred eEEEEEeecCCceEEEecc---cceEEEEecCchhhhcccccCccceEEEEEecc-----hhHhhhhhcCCceEEeehhh
Confidence 4555566999999999988 799988888776666655321344555544322 22357788999998887776
Q ss_pred cC-ccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 147 EK-DKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 147 ~~-~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
.+ .+...|+...-+.+ +-.||.+.|..
T Consensus 107 ~~~p~~~~~~t~~d~~~--~~rVTal~Ws~ 134 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSH--KCRVTALEWSK 134 (726)
T ss_pred ccCCCcceeeccccccC--CceEEEEEecc
Confidence 54 22223333322212 24599999965
No 490
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=24.38 E-value=26 Score=42.43 Aligned_cols=20 Identities=25% Similarity=0.654 Sum_probs=16.2
Q ss_pred CEEEEcCCChhHHHhHHHHH
Q 001978 864 PFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 864 ~fvvFpCgH~fH~~CL~~~~ 883 (987)
-++.-.|||+-|.+|...-.
T Consensus 1042 s~~Cg~C~Hv~H~sc~~eWf 1061 (1081)
T KOG0309|consen 1042 SNFCGTCGHVGHTSCMMEWF 1061 (1081)
T ss_pred chhhccccccccHHHHHHHH
Confidence 56667899999999997653
No 491
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=23.43 E-value=6.2e+02 Score=23.74 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=52.3
Q ss_pred CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCc
Q 001978 32 DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGL 111 (987)
Q Consensus 32 n~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~ 111 (987)
|-|++|+.+..|-.++- -+-+.++..+ ++|+.+.--+.+..... +. +|.+=-.......=|.=+ |+
T Consensus 16 ~eLlvGs~D~~IRvf~~-~e~~~Ei~e~------~~v~~L~~~~~~~F~Y~-l~---NGTVGvY~~~~RlWRiKS--K~- 81 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKG-DEIVAEITET------DKVTSLCSLGGGRFAYA-LA---NGTVGVYDRSQRLWRIKS--KN- 81 (111)
T ss_pred ceEEEecCCcEEEEEeC-CcEEEEEecc------cceEEEEEcCCCEEEEE-ec---CCEEEEEeCcceeeeecc--CC-
Confidence 78999999965555443 1224455443 45666665555554443 33 466522222222222222 33
Q ss_pred eEEEEeecCCCCCCCCcceEEEEcCCCcE
Q 001978 112 VVNAVAWNRQQITEASTKEIILGTDTGQL 140 (987)
Q Consensus 112 ~i~sVaw~~~~~~~~st~~iLiGt~~G~i 140 (987)
.+.|+++.+.+.. -..++++|-++|.|
T Consensus 82 ~~~~~~~~D~~gd--G~~eLI~GwsnGkv 108 (111)
T PF14783_consen 82 QVTSMAFYDINGD--GVPELIVGWSNGKV 108 (111)
T ss_pred CeEEEEEEcCCCC--CceEEEEEecCCeE
Confidence 5888888755422 35699999999965
No 492
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=23.32 E-value=2.6e+02 Score=28.93 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=39.3
Q ss_pred hhhHHH----HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHH-HhcCC--HHHHHHHHHhhc
Q 001978 364 GRDMWK----VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAA-FATKD--FHRAASFYAKIN 418 (987)
Q Consensus 364 ~~~~W~----~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l-~~~g~--y~~Aa~~~~~~~ 418 (987)
+...|. +|+..|+|++|+...+.. .....++..+|.-+ +..|+ +.+|.+.+.+..
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445564 467889999999886532 23456778888865 67777 589998888875
No 493
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.26 E-value=39 Score=36.15 Aligned_cols=32 Identities=31% Similarity=0.608 Sum_probs=25.1
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAH 882 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~ 882 (987)
.+.+|.+|-.... .+..-||||.|--.||...
T Consensus 214 ~d~kC~lC~e~~~-------------------~ps~t~CgHlFC~~Cl~~~ 245 (271)
T COG5574 214 ADYKCFLCLEEPE-------------------VPSCTPCGHLFCLSCLLIS 245 (271)
T ss_pred cccceeeeecccC-------------------CcccccccchhhHHHHHHH
Confidence 4789999975543 3456799999999999764
No 494
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.22 E-value=2.9e+02 Score=32.19 Aligned_cols=113 Identities=17% Similarity=0.068 Sum_probs=0.0
Q ss_pred cCCCceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 19 KGRGVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 19 ~~~~~i~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
+|+-.=-.+.-.|+++++--.+..|--++..|++..-+....-..+...|.+.|-..+-.-.+|++. |--+|-...
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~----G~e~y~v~p 141 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQ----GIEFYQVLP 141 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecC----CeEEEEEch
Q ss_pred CCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcC-CCcEE
Q 001978 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLH 141 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~-~G~i~ 141 (987)
..+--.+-|-++..|.=.+|.+. |+-+|+.|. .|..+
T Consensus 142 ekrslRlVks~~~nvnWy~yc~e------t~v~LL~t~~~~n~l 179 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPE------TAVILLSTTVLENVL 179 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccc------cceEeeecccccccc
No 495
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=22.98 E-value=1.1e+02 Score=19.30 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 393 VYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 393 V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
++...|..++..|+|++|...|.++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45677888999999999999887765
No 496
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=22.93 E-value=5.3e+02 Score=28.76 Aligned_cols=96 Identities=15% Similarity=0.190 Sum_probs=58.9
Q ss_pred cceeEEEeCCCCCeEEEEeecCCCccEE-EEe--cC-CCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEE
Q 001978 66 QSIHKVFVDPGGSHCIATIVGSGGAETF-YTH--AK-WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLH 141 (987)
Q Consensus 66 ~~i~~i~lDp~G~hlli~~~~~~~g~~~-Y~~--~~-~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~ 141 (987)
++|+..--.+.+.-+.+|.+ +.++. |-- .+ +.+.+.|++ .+..|+.|.|+ +. +..|+-+..+-.-|
T Consensus 11 ~pitchAwn~drt~iAv~~~---~~evhiy~~~~~~~w~~~htls~-Hd~~vtgvdWa-p~-----snrIvtcs~drnay 80 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPN---NHEVHIYSMLGADLWEPAHTLSE-HDKIVTGVDWA-PK-----SNRIVTCSHDRNAY 80 (361)
T ss_pred CceeeeeecCCCceEEeccC---CceEEEEEecCCCCceeceehhh-hCcceeEEeec-CC-----CCceeEccCCCCcc
Confidence 45666666777888888887 66663 322 23 446777775 67899999999 32 23788887653344
Q ss_pred EEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 142 EMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 142 e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
.-.... +..+|....|-......++|.|..
T Consensus 81 Vw~~~~----~~~WkptlvLlRiNrAAt~V~WsP 110 (361)
T KOG1523|consen 81 VWTQPS----GGTWKPTLVLLRINRAATCVKWSP 110 (361)
T ss_pred ccccCC----CCeeccceeEEEeccceeeEeecC
Confidence 433311 223555433332225689999974
No 497
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=22.53 E-value=1.5e+03 Score=27.96 Aligned_cols=115 Identities=11% Similarity=0.065 Sum_probs=62.6
Q ss_pred eeEEEEeCC--EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEe---CCCCCeEEEEeecCCCccEEEEecC
Q 001978 24 ITCMSAGND--VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFV---DPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 24 i~~~~v~nn--~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~l---Dp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
||.|+-+.+ .|.-+.++.+.-.+....+...++..... ..--+=||- .|.+....-++. |-.+-.+...
T Consensus 575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~---k~HtRIIWdcsW~pde~~FaTaSR---DK~VkVW~~~ 648 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACL---KAHTRIIWDCSWSPDEKYFATASR---DKKVKVWEEP 648 (764)
T ss_pred EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccc---cccceEEEEcccCcccceeEEecC---CceEEEEecc
Confidence 677777665 44444455555555542233333332110 111122443 577777555555 5555444332
Q ss_pred CCCc----e-eccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEec
Q 001978 99 WSKP----R-VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (987)
Q Consensus 99 ~~k~----k-~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (987)
.... + ...+ .+..|++|+|.+....+ ..+-+.+|...|.|+.....
T Consensus 649 ~~~d~~i~~~a~~~-~~~aVTAv~~~~~~~~e-~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 649 DLRDKYISRFACLK-FSLAVTAVAYLPVDHNE-KGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred Cchhhhhhhhchhc-cCCceeeEEeecccccc-ccceEEEEecccEEEEEecc
Confidence 2211 1 2223 36689999999544332 34468899999999998764
No 498
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=22.22 E-value=52 Score=25.04 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=25.9
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAH 882 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~ 882 (987)
....|.+|++.|++.. . .+-.=.|+-..|.+|...-
T Consensus 10 ~~~~C~~C~~~i~~~~---~------------~~~C~~C~~~~H~~C~~~v 45 (49)
T smart00109 10 KPTKCCVCRKSIWGSF---Q------------GLRCSWCKVKCHKKCAEKV 45 (49)
T ss_pred CCCCccccccccCcCC---C------------CcCCCCCCchHHHHHHhhc
Confidence 4568999999999721 0 2223369999999998753
No 499
>PRK11189 lipoprotein NlpI; Provisional
Probab=22.02 E-value=1.1e+03 Score=25.95 Aligned_cols=155 Identities=15% Similarity=0.070 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHH-hHChHHHHHHHHcCCCCCCCcchhhhhhcCCCCCCC
Q 001978 537 HEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLI-MLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAK 611 (987)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~l~~~----~~~~~li~k~~~~Ll-~~~p~~ti~~l~~~~~ld~~~lip~L~~~~~~~~~~ 611 (987)
|..+...|...|+|++|++.+.+. ++....+...+..+. ...++++++.+-+.-.++|..-...+..+... ..
T Consensus 101 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~--~~ 178 (296)
T PRK11189 101 YNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAE--SK 178 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--cc
Confidence 334556788888999988876542 232334444444444 35666777766544344444321111111000 00
Q ss_pred CChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeee
Q 001978 612 NETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACV 691 (987)
Q Consensus 612 ~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v 691 (987)
.....++..++..+.... .+.....++.++....++.+.+..+... ..-.++.+-+.|. -+--..
T Consensus 179 ~~~~~A~~~l~~~~~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~~~~----------~~~~~~l~~~~~e---a~~~Lg 243 (296)
T PRK11189 179 LDPKQAKENLKQRYEKLD--KEQWGWNIVEFYLGKISEETLMERLKAG----------ATDNTELAERLCE---TYFYLA 243 (296)
T ss_pred CCHHHHHHHHHHHHhhCC--ccccHHHHHHHHccCCCHHHHHHHHHhc----------CCCcHHHHHHHHH---HHHHHH
Confidence 134567777765443321 1222233444454433233333333221 0011111111221 111234
Q ss_pred hhhhccccHHHHHHHHH
Q 001978 692 HIYGMMSMHEEAVALAL 708 (987)
Q Consensus 692 ~L~~~~g~~~eAl~l~l 708 (987)
.+|.++|++++|+..+-
T Consensus 244 ~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 244 KYYLSLGDLDEAAALFK 260 (296)
T ss_pred HHHHHCCCHHHHHHHHH
Confidence 45678888888887653
No 500
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=21.98 E-value=1.4e+02 Score=31.37 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=37.3
Q ss_pred HHchhhHHHHHHhcCC-----ch--hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRD-----PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~-----~~--~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
++..|+|++|+...+. |. .........|..++..|+|++|...|.+..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l 97 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFI 97 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6778899999988652 32 234567788999999999999999888764
Done!