Query 001978
Match_columns 987
No_of_seqs 284 out of 819
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 07:10:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xi4_A Clathrin heavy chain; a 99.4 1.3E-10 4.4E-15 145.8 29.9 372 365-792 1053-1456(1630)
2 1xi4_A Clathrin heavy chain; a 99.1 4.5E-07 1.6E-11 114.3 45.1 353 289-717 260-641 (1630)
3 1b89_A Protein (clathrin heavy 99.1 6.4E-10 2.2E-14 126.6 16.9 368 371-795 12-386 (449)
4 3mkq_A Coatomer beta'-subunit; 98.6 0.00075 2.6E-08 83.7 45.6 92 22-121 185-281 (814)
5 1gxr_A ESG1, transducin-like e 98.1 0.0039 1.3E-07 67.4 31.9 157 21-199 51-212 (337)
6 1b89_A Protein (clathrin heavy 98.1 6.7E-05 2.3E-09 85.5 17.7 172 497-701 258-449 (449)
7 3lvg_A Clathrin heavy chain 1; 98.1 7.5E-08 2.6E-12 107.9 -6.3 364 371-808 180-568 (624)
8 1bpo_A Protein (clathrin); cla 97.8 0.058 2E-06 60.6 34.5 363 29-450 33-425 (494)
9 3k26_A Polycomb protein EED; W 97.8 0.00041 1.4E-08 76.3 17.6 177 6-200 3-191 (366)
10 3lvg_A Clathrin heavy chain 1; 97.8 4.1E-08 1.4E-12 109.9 -15.1 315 375-743 39-363 (624)
11 1gxr_A ESG1, transducin-like e 97.8 0.0013 4.3E-08 71.4 20.9 148 21-197 183-333 (337)
12 4aez_A CDC20, WD repeat-contai 97.8 0.013 4.6E-07 65.9 29.6 149 24-199 96-246 (401)
13 4a11_B DNA excision repair pro 97.7 0.068 2.3E-06 59.3 35.2 162 20-199 42-216 (408)
14 1sq9_A Antiviral protein SKI8; 97.7 0.035 1.2E-06 61.7 31.1 162 20-199 15-214 (397)
15 4ery_A WD repeat-containing pr 97.6 0.0029 9.9E-08 68.5 21.2 152 21-199 23-178 (312)
16 1sq9_A Antiviral protein SKI8; 97.6 0.002 7E-08 72.0 20.5 162 21-198 186-392 (397)
17 1k8k_C P40, ARP2/3 complex 41 97.6 0.0014 4.8E-08 72.4 18.6 156 21-198 8-170 (372)
18 3jrp_A Fusion protein of prote 97.6 0.0034 1.2E-07 69.2 21.8 166 21-198 55-237 (379)
19 3ow8_A WD repeat-containing pr 97.6 0.0032 1.1E-07 69.1 20.5 149 22-198 165-318 (321)
20 3f3f_A Nucleoporin SEH1; struc 97.6 0.0051 1.8E-07 66.4 21.6 169 20-198 109-334 (351)
21 3ow8_A WD repeat-containing pr 97.6 0.0029 9.8E-08 69.4 19.6 151 22-198 81-234 (321)
22 1got_B GT-beta; complex (GTP-b 97.5 0.0029 1E-07 69.8 19.8 150 21-197 184-339 (340)
23 4aez_A CDC20, WD repeat-contai 97.5 0.003 1E-07 71.3 20.1 152 20-198 175-333 (401)
24 1r5m_A SIR4-interacting protei 97.5 0.0012 4.1E-08 74.2 16.5 151 21-198 108-275 (425)
25 2ovr_B FBW7, F-BOX/WD repeat p 97.5 0.07 2.4E-06 60.8 31.6 145 21-198 159-305 (445)
26 3zwl_B Eukaryotic translation 97.5 0.0031 1E-07 69.2 19.4 152 21-198 74-246 (369)
27 3odt_A Protein DOA1; ubiquitin 97.5 0.059 2E-06 57.3 29.2 149 21-198 18-171 (313)
28 1r5m_A SIR4-interacting protei 97.5 0.0028 9.6E-08 71.1 19.3 157 21-197 247-421 (425)
29 4ery_A WD repeat-containing pr 97.5 0.0071 2.4E-07 65.3 21.9 152 21-198 65-220 (312)
30 1k8k_C P40, ARP2/3 complex 41 97.5 0.0057 1.9E-07 67.4 21.3 163 20-199 51-231 (372)
31 3ei3_B DNA damage-binding prot 97.5 0.0065 2.2E-07 67.7 21.9 160 21-199 118-280 (383)
32 3mkq_A Coatomer beta'-subunit; 97.5 0.0026 9E-08 78.7 20.1 154 20-198 12-169 (814)
33 3zwl_B Eukaryotic translation 97.5 0.0042 1.4E-07 68.1 19.5 158 21-199 32-204 (369)
34 1vyh_C Platelet-activating fac 97.4 0.007 2.4E-07 68.7 21.2 159 21-199 192-367 (410)
35 1got_B GT-beta; complex (GTP-b 97.4 0.0077 2.6E-07 66.3 20.9 151 21-198 55-212 (340)
36 3ei3_B DNA damage-binding prot 97.4 0.0044 1.5E-07 69.2 18.9 154 21-198 73-233 (383)
37 3odt_A Protein DOA1; ubiquitin 97.4 0.0051 1.8E-07 65.8 18.7 149 20-198 103-252 (313)
38 2pbi_B Guanine nucleotide-bind 97.4 0.0076 2.6E-07 66.9 20.5 150 22-197 197-353 (354)
39 1vyh_C Platelet-activating fac 97.4 0.0082 2.8E-07 68.2 20.9 149 22-198 109-262 (410)
40 3jrp_A Fusion protein of prote 97.4 0.011 3.8E-07 65.0 21.5 163 20-198 100-284 (379)
41 3k26_A Polycomb protein EED; W 97.4 0.0025 8.7E-08 69.9 16.1 155 22-198 70-257 (366)
42 4gqb_B Methylosome protein 50; 97.4 0.006 2E-07 67.8 19.1 154 21-198 127-286 (344)
43 3frx_A Guanine nucleotide-bind 97.3 0.015 5.3E-07 63.3 21.7 158 21-199 65-225 (319)
44 4gga_A P55CDC, cell division c 97.3 0.11 3.6E-06 58.9 29.5 143 30-199 115-259 (420)
45 4g56_B MGC81050 protein; prote 97.3 0.0065 2.2E-07 67.6 18.9 155 21-198 139-298 (357)
46 3jro_A Fusion protein of prote 97.3 0.0065 2.2E-07 75.1 20.4 164 21-198 53-235 (753)
47 3f3f_A Nucleoporin SEH1; struc 97.3 0.01 3.5E-07 64.0 19.8 163 20-198 56-246 (351)
48 2hes_X YDR267CP; beta-propelle 97.3 0.021 7.1E-07 62.6 22.4 160 21-198 14-181 (330)
49 1pgu_A Actin interacting prote 97.3 0.0056 1.9E-07 72.7 19.0 160 21-198 446-611 (615)
50 2ynn_A Coatomer subunit beta'; 97.3 0.012 4E-07 63.7 20.0 154 20-198 12-169 (304)
51 2aq5_A Coronin-1A; WD40 repeat 97.3 0.012 4.2E-07 66.2 20.8 155 21-199 81-252 (402)
52 3i2n_A WD repeat-containing pr 97.2 0.024 8.2E-07 61.8 22.3 164 20-198 110-288 (357)
53 3i2n_A WD repeat-containing pr 97.2 0.0077 2.6E-07 65.8 18.1 157 23-198 166-350 (357)
54 1p22_A F-BOX/WD-repeat protein 97.2 0.015 5E-07 66.4 20.7 147 22-198 134-282 (435)
55 1yfq_A Cell cycle arrest prote 97.2 0.012 4E-07 64.1 18.6 152 21-198 56-222 (342)
56 2pm9_A Protein WEB1, protein t 97.2 0.0084 2.9E-07 67.2 17.8 159 21-198 165-334 (416)
57 3fm0_A Protein CIAO1; WDR39,SG 97.1 0.018 6.1E-07 63.5 20.1 156 23-198 18-178 (345)
58 3dwl_C Actin-related protein 2 97.1 0.0081 2.8E-07 66.6 17.3 161 20-198 54-233 (377)
59 3dwl_C Actin-related protein 2 97.1 0.002 6.9E-08 71.6 12.3 154 21-198 11-174 (377)
60 2xzm_R RACK1; ribosome, transl 97.1 0.035 1.2E-06 61.0 22.3 156 22-198 77-241 (343)
61 4e54_B DNA damage-binding prot 97.1 0.0054 1.8E-07 70.2 16.2 154 21-198 119-279 (435)
62 4a11_B DNA excision repair pro 97.1 0.027 9.2E-07 62.6 21.6 159 22-199 142-363 (408)
63 4aow_A Guanine nucleotide-bind 97.1 0.33 1.1E-05 52.2 29.9 160 21-198 38-201 (340)
64 3vl1_A 26S proteasome regulato 97.1 0.026 9E-07 63.4 21.4 161 20-199 138-320 (420)
65 2xpi_A Anaphase-promoting comp 97.1 0.33 1.1E-05 57.1 32.0 234 495-761 325-575 (597)
66 2ymu_A WD-40 repeat protein; u 97.1 0.013 4.4E-07 69.2 19.4 150 21-198 426-577 (577)
67 3mmy_A MRNA export factor; mRN 97.1 0.013 4.4E-07 64.1 17.9 150 21-198 39-196 (368)
68 2xyi_A Probable histone-bindin 97.1 0.013 4.3E-07 67.0 18.4 157 21-198 128-306 (430)
69 1yfq_A Cell cycle arrest prote 97.1 0.021 7.3E-07 61.9 19.5 133 20-172 149-301 (342)
70 2pm7_B Protein transport prote 97.1 0.049 1.7E-06 58.5 22.2 164 21-198 53-235 (297)
71 3fm0_A Protein CIAO1; WDR39,SG 97.0 0.049 1.7E-06 60.0 22.4 155 22-198 62-222 (345)
72 2ynn_A Coatomer subunit beta'; 97.0 0.036 1.2E-06 59.7 20.6 155 22-198 56-214 (304)
73 1p22_A F-BOX/WD-repeat protein 97.0 0.021 7.3E-07 65.0 19.5 148 21-198 213-362 (435)
74 2ovr_B FBW7, F-BOX/WD repeat p 97.0 0.028 9.5E-07 64.1 20.4 146 20-198 198-345 (445)
75 3iz6_a 40S ribosomal protein R 97.0 0.022 7.6E-07 63.7 19.1 154 22-198 206-372 (380)
76 1erj_A Transcriptional repress 97.0 0.029 1E-06 63.1 20.1 153 23-198 125-284 (393)
77 4gqb_B Methylosome protein 50; 97.0 0.036 1.2E-06 61.4 20.3 157 22-198 83-243 (344)
78 3sfz_A APAF-1, apoptotic pepti 97.0 0.021 7.3E-07 74.4 21.4 153 21-198 615-771 (1249)
79 2xyi_A Probable histone-bindin 96.9 0.047 1.6E-06 62.2 21.4 161 21-198 231-407 (430)
80 3v7d_B Cell division control p 96.9 0.026 8.9E-07 64.6 19.3 147 21-198 270-418 (464)
81 2ymu_A WD-40 repeat protein; u 96.9 0.029 1E-06 66.1 20.1 150 21-198 385-536 (577)
82 2aq5_A Coronin-1A; WD40 repeat 96.9 0.021 7.2E-07 64.2 18.0 152 24-198 37-204 (402)
83 3v7d_B Cell division control p 96.9 0.9 3.1E-05 51.5 33.7 111 24-148 125-237 (464)
84 4g56_B MGC81050 protein; prote 96.9 0.018 6.1E-07 64.0 17.1 161 20-198 93-255 (357)
85 2pbi_B Guanine nucleotide-bind 96.9 0.08 2.7E-06 58.5 22.5 153 22-198 155-312 (354)
86 3jro_A Fusion protein of prote 96.9 0.014 4.8E-07 72.1 17.5 162 21-198 99-282 (753)
87 4e54_B DNA damage-binding prot 96.8 0.014 4.6E-07 66.8 15.8 159 21-199 164-325 (435)
88 1w3b_A UDP-N-acetylglucosamine 96.8 0.16 5.4E-06 56.4 24.3 330 370-761 8-364 (388)
89 1pgu_A Actin interacting prote 96.8 0.026 9E-07 66.8 18.9 153 20-198 62-235 (615)
90 4aow_A Guanine nucleotide-bind 96.8 0.033 1.1E-06 60.2 18.2 154 22-198 172-334 (340)
91 3vl1_A 26S proteasome regulato 96.8 0.021 7.2E-07 64.2 17.1 146 26-198 63-209 (420)
92 3gre_A Serine/threonine-protei 96.8 0.037 1.3E-06 62.7 19.2 121 20-148 167-293 (437)
93 2hes_X YDR267CP; beta-propelle 96.8 0.084 2.9E-06 57.6 21.1 162 22-198 108-277 (330)
94 2vdu_B TRNA (guanine-N(7)-)-me 96.8 0.034 1.2E-06 63.6 18.6 155 23-198 104-268 (450)
95 2pm9_A Protein WEB1, protein t 96.7 0.017 5.7E-07 64.7 15.6 161 20-198 112-291 (416)
96 2xpi_A Anaphase-promoting comp 96.7 0.12 4.2E-06 60.9 23.6 61 690-761 481-541 (597)
97 3dm0_A Maltose-binding peripla 96.7 0.052 1.8E-06 66.0 20.7 154 21-198 430-589 (694)
98 3frx_A Guanine nucleotide-bind 96.6 0.066 2.2E-06 58.2 19.0 160 21-199 17-183 (319)
99 3gre_A Serine/threonine-protei 96.6 0.026 8.8E-07 64.1 16.3 162 21-199 63-243 (437)
100 2vdu_B TRNA (guanine-N(7)-)-me 96.6 0.079 2.7E-06 60.5 20.4 113 21-148 149-272 (450)
101 2oaj_A Protein SNI1; WD40 repe 96.6 0.04 1.4E-06 69.5 19.0 154 21-199 58-240 (902)
102 3mmy_A MRNA export factor; mRN 96.6 0.073 2.5E-06 57.9 18.9 147 21-190 170-335 (368)
103 2xzm_R RACK1; ribosome, transl 96.5 0.11 3.8E-06 56.9 20.1 163 21-198 21-200 (343)
104 2pm7_B Protein transport prote 96.5 0.19 6.6E-06 53.7 21.0 162 21-198 99-282 (297)
105 3ieg_A DNAJ homolog subfamily 96.4 0.22 7.4E-06 53.8 21.2 49 370-418 12-64 (359)
106 3vgz_A Uncharacterized protein 96.4 1.3 4.6E-05 47.5 27.7 150 23-199 42-213 (353)
107 2gw1_A Mitochondrial precursor 96.3 0.41 1.4E-05 54.7 24.5 49 370-418 15-66 (514)
108 3bws_A Protein LP49; two-domai 96.3 1.1 3.8E-05 50.1 27.5 154 22-198 123-289 (433)
109 2c2l_A CHIP, carboxy terminus 96.3 0.05 1.7E-06 58.2 15.3 78 614-709 20-97 (281)
110 4ayc_A E3 ubiquitin-protein li 96.3 0.0048 1.6E-07 59.0 6.2 33 832-883 52-84 (138)
111 3dw8_B Serine/threonine-protei 96.2 0.089 3E-06 59.4 17.4 118 20-148 225-374 (447)
112 3dw8_B Serine/threonine-protei 96.2 0.082 2.8E-06 59.7 17.1 161 22-199 29-256 (447)
113 1erj_A Transcriptional repress 96.2 0.23 7.9E-06 55.5 20.7 159 21-199 165-339 (393)
114 1g25_A CDK-activating kinase a 96.2 0.0034 1.2E-07 51.4 3.7 36 833-883 3-39 (65)
115 3dm0_A Maltose-binding peripla 96.1 0.11 3.7E-06 63.2 18.7 160 21-198 382-547 (694)
116 2ecm_A Ring finger and CHY zin 96.1 0.0014 4.9E-08 51.5 1.2 37 832-883 4-40 (55)
117 1l0q_A Surface layer protein; 96.1 2.2 7.7E-05 46.7 28.5 138 33-198 4-144 (391)
118 3sfz_A APAF-1, apoptotic pepti 96.0 0.038 1.3E-06 72.0 14.8 149 22-198 962-1113(1249)
119 3bg1_A Protein SEC13 homolog; 96.0 0.11 3.8E-06 56.3 16.3 163 21-198 103-290 (316)
120 3lrv_A PRE-mRNA-splicing facto 96.0 0.15 5.2E-06 55.7 17.4 112 22-147 126-244 (343)
121 3lrv_A PRE-mRNA-splicing facto 96.0 0.096 3.3E-06 57.4 15.6 152 23-199 78-242 (343)
122 1nr0_A Actin interacting prote 95.9 0.34 1.2E-05 57.8 21.6 155 21-199 59-219 (611)
123 3e5z_A Putative gluconolactona 95.9 1.5 5.1E-05 46.4 24.6 95 23-133 29-130 (296)
124 1w3b_A UDP-N-acetylglucosamine 95.9 0.63 2.2E-05 51.4 22.3 293 369-709 41-364 (388)
125 2y4t_A DNAJ homolog subfamily 95.9 0.61 2.1E-05 52.4 22.5 275 369-659 34-355 (450)
126 4ggc_A P55CDC, cell division c 95.9 2.2 7.4E-05 45.0 30.3 146 25-198 29-178 (318)
127 1t1h_A Gspef-atpub14, armadill 95.9 0.0033 1.1E-07 53.6 2.4 35 830-883 5-39 (78)
128 2kiz_A E3 ubiquitin-protein li 95.8 0.0028 9.7E-08 52.5 1.8 37 831-883 12-48 (69)
129 1l0q_A Surface layer protein; 95.8 0.4 1.4E-05 52.9 20.2 150 22-199 74-231 (391)
130 1chc_A Equine herpes virus-1 r 95.8 0.0019 6.6E-08 53.3 0.7 34 832-883 4-37 (68)
131 3fp2_A TPR repeat-containing p 95.8 0.8 2.7E-05 52.8 23.5 204 517-761 252-487 (537)
132 2ep4_A Ring finger protein 24; 95.8 0.0031 1.1E-07 53.1 1.8 38 830-883 12-49 (74)
133 4h5i_A Guanine nucleotide-exch 95.8 0.2 6.9E-06 55.6 17.4 153 24-199 136-298 (365)
134 3v9f_A Two-component system se 95.7 4 0.00014 50.1 30.7 283 22-363 313-612 (781)
135 1iym_A EL5; ring-H2 finger, ub 95.7 0.0021 7.2E-08 50.6 0.4 38 830-883 2-40 (55)
136 3vu4_A KMHSV2; beta-propeller 95.7 0.52 1.8E-05 51.9 20.3 105 30-148 146-272 (355)
137 3fl2_A E3 ubiquitin-protein li 95.7 0.0052 1.8E-07 57.5 3.2 34 831-883 50-83 (124)
138 2ysj_A Tripartite motif-contai 95.7 0.0033 1.1E-07 51.1 1.5 36 830-884 17-52 (63)
139 2oaj_A Protein SNI1; WD40 repe 95.6 0.25 8.4E-06 62.2 19.2 156 21-198 17-179 (902)
140 3bws_A Protein LP49; two-domai 95.6 0.3 1E-05 54.8 18.2 151 21-198 169-331 (433)
141 3vu4_A KMHSV2; beta-propeller 95.6 0.16 5.5E-06 56.0 15.5 116 21-148 195-337 (355)
142 3iz6_a 40S ribosomal protein R 95.5 0.35 1.2E-05 53.8 18.1 157 23-199 159-327 (380)
143 2ckl_B Ubiquitin ligase protei 95.4 0.0051 1.7E-07 60.7 2.2 33 833-883 54-86 (165)
144 1x4j_A Ring finger protein 38; 95.4 0.0035 1.2E-07 53.0 0.6 37 832-884 22-58 (75)
145 2ea6_A Ring finger protein 4; 95.3 0.0066 2.3E-07 50.1 2.3 42 830-883 12-53 (69)
146 3bg1_A Protein SEC13 homolog; 95.3 0.35 1.2E-05 52.2 16.8 168 21-199 57-245 (316)
147 3ng2_A RNF4, snurf, ring finge 95.3 0.0049 1.7E-07 51.3 1.3 41 831-883 8-48 (71)
148 2ecl_A Ring-box protein 2; RNF 95.2 0.0056 1.9E-07 52.6 1.5 48 832-883 14-61 (81)
149 1xip_A Nucleoporin NUP159; bet 95.2 0.76 2.6E-05 51.6 19.3 125 24-174 90-222 (388)
150 2ect_A Ring finger protein 126 95.2 0.0039 1.3E-07 53.0 0.4 38 830-883 12-49 (78)
151 2oit_A Nucleoporin 214KDA; NH2 95.1 0.21 7.1E-06 57.1 14.7 114 22-146 93-222 (434)
152 2hqs_A Protein TOLB; TOLB, PAL 95.0 1.3 4.6E-05 49.8 21.2 154 20-198 177-341 (415)
153 3ztg_A E3 ubiquitin-protein li 95.0 0.0089 3E-07 52.6 2.2 36 829-883 9-45 (92)
154 2xeu_A Ring finger protein 4; 95.0 0.0065 2.2E-07 49.2 1.3 39 833-883 3-41 (64)
155 2l0b_A E3 ubiquitin-protein li 95.0 0.0066 2.3E-07 53.4 1.4 37 831-883 38-74 (91)
156 4h5i_A Guanine nucleotide-exch 95.0 0.6 2.1E-05 51.6 17.9 153 21-198 176-340 (365)
157 2djb_A Polycomb group ring fin 94.9 0.0069 2.4E-07 50.7 1.1 36 830-883 12-47 (72)
158 1nr0_A Actin interacting prote 94.9 1.3 4.3E-05 52.8 21.4 112 21-146 147-269 (611)
159 4a2l_A BT_4663, two-component 94.8 0.57 2E-05 57.9 18.8 156 21-199 356-524 (795)
160 2ecj_A Tripartite motif-contai 94.8 0.0065 2.2E-07 48.2 0.7 35 830-883 12-46 (58)
161 3g4e_A Regucalcin; six bladed 94.8 0.64 2.2E-05 49.7 16.8 87 31-135 25-115 (297)
162 2ysl_A Tripartite motif-contai 94.8 0.0077 2.6E-07 50.4 1.1 35 830-883 17-51 (73)
163 2hqs_A Protein TOLB; TOLB, PAL 94.8 1.2 4.1E-05 50.2 19.9 133 41-198 159-297 (415)
164 3ro2_A PINS homolog, G-protein 94.7 3.1 0.00011 43.7 22.2 49 370-418 14-70 (338)
165 2d8t_A Dactylidin, ring finger 94.7 0.008 2.7E-07 50.1 0.9 33 832-883 14-46 (71)
166 2j04_A TAU60, YPL007P, hypothe 94.6 0.63 2.1E-05 54.7 17.1 154 21-199 85-252 (588)
167 2ct2_A Tripartite motif protei 94.6 0.012 4.1E-07 51.1 2.0 39 830-883 12-50 (88)
168 4ggc_A P55CDC, cell division c 94.5 1 3.4E-05 47.7 17.6 156 23-198 152-312 (318)
169 4gga_A P55CDC, cell division c 94.5 0.82 2.8E-05 51.4 17.7 155 23-198 232-392 (420)
170 2j04_B YDR362CP, TAU91; beta p 94.5 0.24 8.3E-06 58.2 13.5 151 22-198 267-425 (524)
171 3vgz_A Uncharacterized protein 94.3 1.2 4E-05 48.0 17.8 158 24-198 91-259 (353)
172 2qc5_A Streptogramin B lactona 94.3 5.9 0.0002 41.1 28.5 150 22-199 20-174 (300)
173 3ieg_A DNAJ homolog subfamily 94.3 1.4 4.8E-05 47.2 18.3 80 369-448 79-182 (359)
174 4a1s_A PINS, partner of inscut 94.2 3.9 0.00013 45.1 22.3 50 369-418 56-113 (411)
175 2ojh_A Uncharacterized protein 94.2 1.1 3.7E-05 46.5 16.6 146 23-190 130-291 (297)
176 2ojh_A Uncharacterized protein 94.2 2.6 9E-05 43.4 19.7 155 21-198 41-203 (297)
177 3hym_B Cell division cycle pro 94.1 1.7 5.9E-05 45.9 18.4 249 369-643 30-314 (330)
178 4a2l_A BT_4663, two-component 94.1 0.91 3.1E-05 56.0 18.2 151 21-199 405-569 (795)
179 3sf4_A G-protein-signaling mod 94.1 3.9 0.00013 44.6 21.8 49 370-418 18-74 (406)
180 2ckl_A Polycomb group ring fin 94.1 0.013 4.6E-07 53.2 1.1 36 830-883 12-47 (108)
181 3hym_B Cell division cycle pro 94.0 1.1 3.9E-05 47.4 16.9 27 392-418 23-49 (330)
182 2f42_A STIP1 homology and U-bo 94.0 0.11 3.6E-06 51.6 7.6 38 827-883 100-137 (179)
183 1v87_A Deltex protein 2; ring- 94.0 0.027 9.2E-07 51.6 3.0 52 831-883 23-74 (114)
184 1xnf_A Lipoprotein NLPI; TPR, 94.0 1.1 3.7E-05 46.2 16.0 25 393-417 79-103 (275)
185 2yur_A Retinoblastoma-binding 93.9 0.014 4.9E-07 49.0 0.9 35 830-883 12-47 (74)
186 2y43_A E3 ubiquitin-protein li 93.9 0.0091 3.1E-07 53.4 -0.3 34 832-883 21-54 (99)
187 3hxj_A Pyrrolo-quinoline quino 93.9 0.42 1.4E-05 51.4 12.9 143 23-198 99-241 (330)
188 2ecw_A Tripartite motif-contai 93.9 0.021 7.1E-07 49.1 1.9 35 830-883 16-50 (85)
189 3dpl_R Ring-box protein 1; ubi 93.8 0.026 8.7E-07 51.1 2.5 52 832-884 36-87 (106)
190 2ecy_A TNF receptor-associated 93.7 0.013 4.6E-07 47.9 0.4 35 830-883 12-46 (66)
191 2oit_A Nucleoporin 214KDA; NH2 93.7 1.2 4.1E-05 50.7 17.1 100 22-136 150-259 (434)
192 1z6u_A NP95-like ring finger p 93.7 0.019 6.5E-07 55.6 1.5 33 832-883 77-109 (150)
193 3mkr_A Coatomer subunit epsilo 93.6 1.1 3.7E-05 47.9 15.6 48 369-416 7-59 (291)
194 1pjx_A Dfpase, DIISOPROPYLFLUO 93.6 8.4 0.00029 40.4 26.1 104 23-137 19-136 (314)
195 2y4t_A DNAJ homolog subfamily 93.6 2.8 9.6E-05 46.8 19.8 29 390-418 25-53 (450)
196 3lrq_A E3 ubiquitin-protein li 93.5 0.012 4.3E-07 52.6 -0.1 36 831-884 20-55 (100)
197 3g4e_A Regucalcin; six bladed 93.4 3.4 0.00012 43.8 19.2 162 22-199 54-227 (297)
198 2j04_A TAU60, YPL007P, hypothe 93.3 1.1 3.6E-05 52.8 15.6 150 23-197 131-295 (588)
199 3v9f_A Two-component system se 93.2 0.81 2.8E-05 56.4 15.6 154 21-199 362-522 (781)
200 2csy_A Zinc finger protein 183 93.2 0.026 8.8E-07 48.3 1.4 32 833-883 15-46 (81)
201 2ecn_A Ring finger protein 141 93.1 0.025 8.6E-07 46.8 1.1 33 830-882 12-44 (70)
202 2ct0_A Non-SMC element 1 homol 93.0 0.04 1.4E-06 46.2 2.1 34 832-883 14-47 (74)
203 2ecv_A Tripartite motif-contai 93.0 0.017 5.9E-07 49.6 -0.1 35 830-883 16-50 (85)
204 2dg1_A DRP35, lactonase; beta 93.0 5.4 0.00018 42.6 20.1 109 23-145 46-169 (333)
205 2z2n_A Virginiamycin B lyase; 92.9 5 0.00017 41.7 19.3 150 22-199 15-169 (299)
206 1fch_A Peroxisomal targeting s 92.8 1.2 4.2E-05 48.2 14.7 46 373-418 37-91 (368)
207 2egp_A Tripartite motif-contai 92.8 0.019 6.4E-07 48.7 -0.2 35 830-883 9-43 (79)
208 4eqf_A PEX5-related protein; a 92.7 1.6 5.3E-05 47.6 15.5 50 369-418 73-126 (365)
209 2z3z_A Dipeptidyl aminopeptida 92.6 1.1 3.6E-05 54.2 15.2 98 23-135 83-199 (706)
210 1ri6_A Putative isomerase YBHE 92.5 4.1 0.00014 43.2 18.3 159 23-198 85-259 (343)
211 3ott_A Two-component system se 92.2 0.56 1.9E-05 57.6 12.0 111 21-144 145-257 (758)
212 2d8s_A Cellular modulator of i 92.1 0.047 1.6E-06 46.7 1.4 35 832-883 14-53 (80)
213 3hxj_A Pyrrolo-quinoline quino 91.9 0.29 9.9E-06 52.6 8.1 108 22-146 215-323 (330)
214 1e4u_A Transcriptional repress 91.9 0.025 8.7E-07 48.1 -0.4 37 830-883 8-46 (78)
215 2ghs_A AGR_C_1268P; regucalcin 91.8 13 0.00043 40.0 21.2 160 22-199 90-258 (326)
216 2gw1_A Mitochondrial precursor 91.7 2.8 9.4E-05 47.7 16.5 50 369-418 47-100 (514)
217 2y1n_A E3 ubiquitin-protein li 91.6 0.077 2.6E-06 58.9 2.9 32 833-883 332-363 (389)
218 2qc5_A Streptogramin B lactona 91.6 8.9 0.0003 39.7 19.3 149 22-199 104-258 (300)
219 1fch_A Peroxisomal targeting s 91.6 3.9 0.00013 44.1 16.9 50 369-418 72-125 (368)
220 1jm7_A BRCA1, breast cancer ty 91.5 0.026 9E-07 51.4 -0.8 33 833-884 21-53 (112)
221 1q7f_A NHL, brain tumor CG1071 91.5 7.7 0.00026 40.3 18.7 151 23-199 78-236 (286)
222 3l11_A E3 ubiquitin-protein li 91.4 0.041 1.4E-06 50.5 0.5 32 832-882 14-45 (115)
223 3as5_A MAMA; tetratricopeptide 91.4 2.7 9.2E-05 39.8 13.8 49 370-418 17-69 (186)
224 2ecf_A Dipeptidyl peptidase IV 91.4 2.4 8.4E-05 51.3 16.5 131 6-148 21-182 (741)
225 4ap4_A E3 ubiquitin ligase RNF 91.3 0.065 2.2E-06 50.2 1.7 42 832-885 6-47 (133)
226 1pjx_A Dfpase, DIISOPROPYLFLUO 91.2 11 0.00038 39.5 19.8 160 22-199 71-254 (314)
227 2ghs_A AGR_C_1268P; regucalcin 91.2 3.6 0.00012 44.4 16.0 141 25-198 52-207 (326)
228 1ri6_A Putative isomerase YBHE 91.0 9.9 0.00034 40.1 19.3 154 23-197 130-304 (343)
229 2z2n_A Virginiamycin B lyase; 91.0 9.7 0.00033 39.4 18.9 109 22-145 57-169 (299)
230 3dr2_A Exported gluconolactona 91.0 18 0.00061 38.2 23.0 56 33-97 59-114 (305)
231 3uq3_A Heat shock protein STI1 91.0 5 0.00017 40.4 16.1 49 370-418 14-65 (258)
232 2ho1_A Type 4 fimbrial biogene 90.9 1.8 6.1E-05 44.1 12.5 49 370-418 46-98 (252)
233 3hct_A TNF receptor-associated 90.3 0.074 2.5E-06 49.0 1.1 35 830-883 15-49 (118)
234 3vtx_A MAMA; tetratricopeptide 90.3 4.1 0.00014 39.1 14.0 47 371-417 15-65 (184)
235 3u4t_A TPR repeat-containing p 90.2 12 0.00041 38.1 18.5 57 539-595 113-174 (272)
236 1rwi_B Serine/threonine-protei 90.1 5.2 0.00018 41.1 15.5 150 23-199 68-220 (270)
237 1bor_A Transcription factor PM 90.0 0.025 8.4E-07 44.7 -2.1 30 833-881 6-35 (56)
238 4a0k_B E3 ubiquitin-protein li 89.9 0.064 2.2E-06 49.3 0.2 50 833-883 48-97 (117)
239 1pby_B Quinohemoprotein amine 89.8 3.3 0.00011 43.9 14.0 141 32-198 2-160 (337)
240 2q7f_A YRRB protein; TPR, prot 89.7 1.6 5.4E-05 43.9 10.8 48 371-418 33-84 (243)
241 3ott_A Two-component system se 89.7 3.4 0.00012 50.5 15.7 111 22-145 103-218 (758)
242 3e5z_A Putative gluconolactona 89.6 4.2 0.00014 42.8 14.5 128 40-199 152-284 (296)
243 1jmx_B Amine dehydrogenase; ox 89.5 1.5 5E-05 47.1 11.0 129 29-174 9-156 (349)
244 3mkq_B Coatomer subunit alpha; 89.4 3 0.0001 41.0 11.8 62 364-429 8-69 (177)
245 2j04_B YDR362CP, TAU91; beta p 89.2 7.6 0.00026 45.2 17.4 140 39-199 181-340 (524)
246 3uc1_A DNA gyrase subunit A; D 89.1 24 0.00081 38.3 20.2 159 22-199 95-277 (327)
247 3u4y_A Uncharacterized protein 88.9 25 0.00086 36.9 20.8 152 23-198 42-204 (331)
248 4eqf_A PEX5-related protein; a 88.6 4.4 0.00015 43.9 14.2 50 369-418 107-160 (365)
249 2pl2_A Hypothetical conserved 88.6 2.7 9.3E-05 42.3 11.6 49 370-418 14-66 (217)
250 3cv0_A Peroxisome targeting si 88.6 5.9 0.0002 41.6 14.9 202 369-588 29-265 (327)
251 1q7f_A NHL, brain tumor CG1071 88.5 22 0.00074 36.7 19.2 149 23-197 122-276 (286)
252 3hfq_A Uncharacterized protein 88.5 20 0.00068 38.2 19.3 154 23-197 142-313 (347)
253 3cv0_A Peroxisome targeting si 88.3 6.8 0.00023 41.1 15.1 90 537-630 175-272 (327)
254 4ap4_A E3 ubiquitin ligase RNF 88.3 0.18 6.1E-06 47.1 2.1 21 864-884 91-111 (133)
255 1xip_A Nucleoporin NUP159; bet 88.2 8.3 0.00028 43.0 16.0 135 23-198 39-188 (388)
256 1rmd_A RAG1; V(D)J recombinati 88.1 0.1 3.5E-06 47.9 0.2 34 832-884 22-55 (116)
257 3nf1_A KLC 1, kinesin light ch 88.1 5.6 0.00019 41.4 14.2 50 369-418 35-96 (311)
258 3gw4_A Uncharacterized protein 88.1 4.9 0.00017 39.0 12.9 48 371-418 2-53 (203)
259 2yhc_A BAMD, UPF0169 lipoprote 88.1 17 0.00056 36.4 17.3 49 370-418 13-68 (225)
260 3kci_A Probable E3 ubiquitin-p 88.0 24 0.00082 39.1 20.0 158 23-198 54-238 (389)
261 3ro2_A PINS homolog, G-protein 88.0 9.2 0.00032 39.9 15.9 50 369-418 51-110 (338)
262 3scy_A Hypothetical bacterial 87.9 32 0.0011 36.9 21.5 118 22-147 100-242 (361)
263 1k32_A Tricorn protease; prote 87.7 6.3 0.00022 50.1 16.7 148 23-198 297-458 (1045)
264 4gq1_A NUP37; propeller, trans 87.6 3.7 0.00013 45.6 12.8 112 28-148 98-219 (393)
265 3uq3_A Heat shock protein STI1 87.3 4.6 0.00016 40.7 12.5 49 370-418 47-106 (258)
266 1jm7_B BARD1, BRCA1-associated 87.2 0.053 1.8E-06 50.0 -2.3 34 832-883 21-54 (117)
267 2vq2_A PILW, putative fimbrial 87.0 11 0.00036 36.9 14.8 79 370-448 17-105 (225)
268 3l6v_A GYRA, DNA gyrase subuni 86.9 24 0.00083 38.9 18.7 155 29-199 5-178 (370)
269 1rwi_B Serine/threonine-protei 86.9 11 0.00038 38.5 15.4 106 23-143 25-134 (270)
270 3knv_A TNF receptor-associated 86.8 0.18 6.3E-06 48.0 1.1 37 829-884 27-63 (141)
271 1xnf_A Lipoprotein NLPI; TPR, 86.7 14 0.00049 37.4 16.1 47 372-418 16-70 (275)
272 3ulq_A Response regulator aspa 86.5 5.6 0.00019 43.6 13.5 49 370-418 152-211 (383)
273 3sf4_A G-protein-signaling mod 86.3 13 0.00045 40.2 16.4 50 369-418 55-114 (406)
274 3vk6_A E3 ubiquitin-protein li 86.2 0.22 7.4E-06 43.7 1.2 31 835-883 3-33 (101)
275 4gq1_A NUP37; propeller, trans 86.2 23 0.00078 38.9 18.5 164 20-199 185-389 (393)
276 3u4y_A Uncharacterized protein 86.0 15 0.0005 38.8 16.2 122 30-174 8-136 (331)
277 1pby_B Quinohemoprotein amine 85.9 16 0.00054 38.4 16.4 64 23-97 83-161 (337)
278 1wim_A KIAA0161 protein; ring 85.9 0.28 9.5E-06 43.1 1.8 34 833-883 5-39 (94)
279 1wp5_A Topoisomerase IV; broke 85.8 20 0.00069 38.8 17.0 154 30-199 4-172 (323)
280 3mkr_A Coatomer subunit epsilo 85.6 4.9 0.00017 42.7 11.9 50 368-417 41-91 (291)
281 3qky_A Outer membrane assembly 85.4 6.3 0.00021 40.5 12.5 49 370-418 24-79 (261)
282 3u4t_A TPR repeat-containing p 85.2 8.1 0.00028 39.4 13.2 48 371-418 47-101 (272)
283 3q7m_A Lipoprotein YFGL, BAMB; 85.2 9.2 0.00031 41.8 14.4 104 25-148 233-338 (376)
284 3k1l_B Fancl; UBC, ring, RWD, 85.0 0.14 4.8E-06 55.2 -0.7 39 832-883 307-347 (381)
285 4a1s_A PINS, partner of inscut 85.0 13 0.00044 40.7 15.6 42 377-418 199-250 (411)
286 1suu_A DNA gyrase subunit A; t 84.8 29 0.001 37.2 17.8 155 30-199 7-179 (312)
287 3scy_A Hypothetical bacterial 84.7 12 0.00041 40.3 15.0 116 23-147 212-337 (361)
288 3nw0_A Non-structural maintena 84.4 0.31 1.1E-05 50.7 1.6 33 833-883 180-212 (238)
289 3dr2_A Exported gluconolactona 83.8 8.2 0.00028 40.9 12.8 146 24-198 133-303 (305)
290 2pl2_A Hypothetical conserved 83.8 28 0.00097 34.5 16.3 156 392-559 6-176 (217)
291 2dg1_A DRP35, lactonase; beta 83.7 47 0.0016 35.0 21.1 161 21-199 86-261 (333)
292 3pbp_A Nucleoporin NUP82; beta 83.6 48 0.0016 37.3 18.7 178 4-199 9-210 (452)
293 3dsm_A Uncharacterized protein 83.0 12 0.00041 40.2 13.9 107 24-147 133-253 (328)
294 3fp2_A TPR repeat-containing p 82.8 2.5 8.7E-05 48.4 8.7 197 369-588 251-487 (537)
295 4abn_A Tetratricopeptide repea 82.7 11 0.00038 43.0 14.1 49 370-418 111-164 (474)
296 3kci_A Probable E3 ubiquitin-p 82.3 46 0.0016 36.7 18.7 155 23-198 160-342 (389)
297 3vtx_A MAMA; tetratricopeptide 82.1 10 0.00035 36.2 11.7 146 391-559 5-166 (184)
298 3ulq_A Response regulator aspa 82.0 61 0.0021 35.0 20.9 48 371-418 113-170 (383)
299 3q15_A PSP28, response regulat 81.8 13 0.00044 40.6 13.8 49 370-418 150-209 (378)
300 4gyw_A UDP-N-acetylglucosamine 81.6 4.3 0.00015 49.4 10.4 50 369-418 17-70 (723)
301 4ic3_A E3 ubiquitin-protein li 81.3 0.33 1.1E-05 40.6 0.2 29 833-880 24-53 (74)
302 4d9s_A UVB-resistance protein 81.0 67 0.0023 35.6 19.6 156 21-198 15-198 (406)
303 3qqz_A Putative uncharacterize 81.0 56 0.0019 33.9 17.6 156 25-199 73-251 (255)
304 1zvt_A Topoisomerase IV subuni 80.9 32 0.0011 35.8 15.6 150 31-199 2-161 (256)
305 3ei3_A DNA damage-binding prot 80.9 70 0.0024 41.0 21.7 114 22-148 514-637 (1158)
306 1zi0_A DNA gyrase subunit A; b 80.5 63 0.0022 34.5 18.3 155 31-199 3-174 (307)
307 4i17_A Hypothetical protein; T 80.4 15 0.00052 36.5 12.7 49 370-418 16-69 (228)
308 1l8d_A DNA double-strand break 80.3 2 6.7E-05 38.9 5.2 48 792-845 12-59 (112)
309 3hrp_A Uncharacterized protein 80.0 46 0.0016 37.0 17.8 109 23-147 132-249 (409)
310 1xfd_A DIP, dipeptidyl aminope 79.7 19 0.00063 43.2 15.3 78 24-107 63-151 (723)
311 3pe7_A Oligogalacturonate lyas 79.0 34 0.0012 36.8 16.1 81 31-118 47-130 (388)
312 2ecf_A Dipeptidyl peptidase IV 78.8 18 0.00062 43.4 14.9 99 23-137 110-229 (741)
313 3no2_A Uncharacterized protein 78.4 25 0.00084 36.8 14.0 98 31-144 5-105 (276)
314 3no0_A DNA gyrase subunit A; D 78.2 71 0.0024 33.5 21.8 155 22-198 68-243 (276)
315 3q15_A PSP28, response regulat 77.7 13 0.00045 40.5 12.2 48 371-418 111-168 (378)
316 2ho1_A Type 4 fimbrial biogene 77.6 21 0.00071 35.8 12.9 32 387-418 33-64 (252)
317 2gop_A Trilobed protease; beta 77.6 47 0.0016 35.1 16.4 96 23-135 16-122 (347)
318 4ga2_A E3 SUMO-protein ligase 77.4 3.1 0.00011 39.1 5.9 24 394-417 34-57 (150)
319 3hfq_A Uncharacterized protein 77.4 77 0.0026 33.5 20.7 117 22-147 86-218 (347)
320 4gco_A Protein STI-1; structur 76.9 4.2 0.00014 37.1 6.5 50 369-418 21-74 (126)
321 3q7m_A Lipoprotein YFGL, BAMB; 76.6 13 0.00044 40.5 11.6 105 23-143 269-374 (376)
322 4d9s_A UVB-resistance protein 75.6 1E+02 0.0035 34.0 20.0 154 23-198 69-250 (406)
323 2yu4_A E3 SUMO-protein ligase 74.6 0.94 3.2E-05 39.7 1.2 35 832-884 6-40 (94)
324 1k32_A Tricorn protease; prote 74.3 33 0.0011 43.4 16.0 112 22-147 15-143 (1045)
325 3dsm_A Uncharacterized protein 74.2 73 0.0025 33.8 16.8 152 23-199 85-251 (328)
326 3hcs_A TNF receptor-associated 74.2 0.9 3.1E-05 44.5 1.1 36 830-884 15-50 (170)
327 3uc1_A DNA gyrase subunit A; D 73.9 45 0.0015 36.1 14.7 153 31-199 3-174 (327)
328 2xev_A YBGF; tetratricopeptide 73.2 23 0.00078 31.1 10.5 49 370-418 11-66 (129)
329 3qky_A Outer membrane assembly 73.1 82 0.0028 31.7 16.3 151 391-559 15-173 (261)
330 2h6f_A Protein farnesyltransfe 73.0 38 0.0013 37.4 14.3 78 518-595 107-198 (382)
331 2kc7_A BFR218_protein; tetratr 73.0 3.9 0.00013 34.7 4.9 49 370-418 9-62 (99)
332 3ffl_A Anaphase-promoting comp 72.6 4.8 0.00016 39.0 5.7 53 366-418 25-90 (167)
333 2kre_A Ubiquitin conjugation f 72.5 1 3.5E-05 40.0 0.9 35 830-883 26-60 (100)
334 2kr4_A Ubiquitin conjugation f 72.5 1.3 4.5E-05 38.0 1.6 35 830-883 11-45 (85)
335 3ma5_A Tetratricopeptide repea 72.4 6.3 0.00022 34.0 6.2 49 370-418 16-68 (100)
336 3ro3_A PINS homolog, G-protein 72.1 48 0.0017 29.6 12.9 49 370-418 18-76 (164)
337 1qqe_A Vesicular transport pro 71.9 21 0.00073 37.4 11.5 56 540-595 164-231 (292)
338 1jmx_B Amine dehydrogenase; ox 71.9 65 0.0022 33.7 15.6 65 24-100 94-176 (349)
339 2vq2_A PILW, putative fimbrial 71.8 72 0.0025 30.6 19.9 30 389-418 6-35 (225)
340 1ouv_A Conserved hypothetical 71.6 57 0.002 33.1 14.6 49 370-418 15-69 (273)
341 2bkl_A Prolyl endopeptidase; m 71.1 72 0.0025 38.0 17.3 161 22-197 70-257 (695)
342 3edt_B KLC 2, kinesin light ch 70.6 89 0.003 31.1 18.8 50 369-418 51-112 (283)
343 2z3z_A Dipeptidyl aminopeptida 70.6 52 0.0018 39.1 15.9 140 39-198 233-388 (706)
344 3tc9_A Hypothetical hydrolase; 70.3 1.3E+02 0.0044 33.6 18.2 151 24-198 139-298 (430)
345 1wgm_A Ubiquitin conjugation f 70.1 1.2 4.2E-05 39.3 0.9 35 830-883 19-54 (98)
346 4ga2_A E3 SUMO-protein ligase 70.1 6.7 0.00023 36.8 6.3 50 369-418 39-92 (150)
347 4a5s_A Dipeptidyl peptidase 4 70.0 19 0.00066 43.5 11.9 132 6-148 3-142 (740)
348 2fp8_A Strictosidine synthase; 69.6 1.1E+02 0.0036 32.3 16.6 61 25-85 22-99 (322)
349 1vyx_A ORF K3, K3RING; zinc-bi 68.7 1.7 5.9E-05 34.6 1.3 33 832-883 5-42 (60)
350 1xfd_A DIP, dipeptidyl aminope 68.6 22 0.00074 42.6 11.9 129 8-147 5-143 (723)
351 1na3_A Designed protein CTPR2; 68.3 4.4 0.00015 33.4 4.1 49 370-418 18-70 (91)
352 3u3w_A Transcriptional activat 68.0 45 0.0015 34.7 13.0 51 368-418 82-142 (293)
353 2ecg_A Baculoviral IAP repeat- 67.9 1.1 3.7E-05 37.4 -0.0 29 833-880 25-54 (75)
354 3gyz_A Chaperone protein IPGC; 67.7 7 0.00024 37.1 5.8 49 370-418 45-97 (151)
355 3upv_A Heat shock protein STI1 67.7 8.1 0.00028 34.4 6.0 49 370-418 13-65 (126)
356 1elw_A TPR1-domain of HOP; HOP 67.0 9.7 0.00033 32.6 6.3 49 370-418 13-65 (118)
357 3qil_A Clathrin heavy chain 1; 66.9 0.91 3.1E-05 41.3 -0.7 103 692-805 14-117 (125)
358 2kck_A TPR repeat; tetratricop 66.9 8.8 0.0003 32.5 5.9 50 369-418 14-67 (112)
359 2bkl_A Prolyl endopeptidase; m 66.8 69 0.0024 38.2 15.9 137 25-174 171-328 (695)
360 2q7f_A YRRB protein; TPR, prot 66.0 37 0.0013 33.4 11.3 49 370-418 66-118 (243)
361 2xzh_A Clathrin heavy chain 1; 65.5 1.6E+02 0.0053 32.0 27.1 297 29-385 34-354 (365)
362 2l6j_A TPR repeat-containing p 65.5 5.4 0.00019 34.3 4.2 49 370-418 13-65 (111)
363 3fvz_A Peptidyl-glycine alpha- 65.4 1.4E+02 0.0048 31.4 19.1 111 22-144 24-172 (329)
364 2lni_A Stress-induced-phosphop 65.4 9.8 0.00034 33.5 6.1 49 370-418 25-77 (133)
365 3u3w_A Transcriptional activat 64.8 1.3E+02 0.0043 31.1 15.8 27 392-418 76-102 (293)
366 1q47_A Semaphorin 3A; beta pro 64.8 8 0.00027 44.6 6.5 60 23-85 405-481 (495)
367 2qfc_A PLCR protein; TPR, HTH, 64.7 40 0.0014 35.0 11.8 50 369-418 83-142 (293)
368 4gcn_A Protein STI-1; structur 64.4 5.6 0.00019 36.1 4.2 25 393-417 85-109 (127)
369 3edt_B KLC 2, kinesin light ch 64.4 69 0.0024 31.9 13.3 44 375-418 22-70 (283)
370 2xcb_A PCRH, regulatory protei 64.3 9.1 0.00031 35.2 5.8 49 370-418 27-79 (142)
371 3sz7_A HSC70 cochaperone (SGT) 64.0 7.4 0.00025 36.7 5.2 50 369-418 19-72 (164)
372 4gz8_A Semaphorin-3A; multi-do 63.9 7.7 0.00026 46.4 6.3 59 24-85 414-489 (667)
373 2vje_B MDM4 protein; proto-onc 63.5 1.3 4.3E-05 35.6 -0.4 33 833-882 7-40 (63)
374 3mvd_K Regulator of chromosome 63.5 1.8E+02 0.0062 32.1 20.3 154 22-198 127-319 (423)
375 2dba_A Smooth muscle cell asso 63.3 16 0.00056 32.8 7.4 49 370-418 37-92 (148)
376 2ifu_A Gamma-SNAP; membrane fu 63.2 42 0.0014 35.3 11.7 50 369-418 44-103 (307)
377 3iuj_A Prolyl endopeptidase; h 63.1 2.2E+02 0.0075 33.8 19.3 111 30-148 184-315 (693)
378 2vyi_A SGTA protein; chaperone 62.9 18 0.0006 31.5 7.3 50 369-418 20-73 (131)
379 3k9i_A BH0479 protein; putativ 62.8 5.3 0.00018 35.4 3.7 27 391-417 27-53 (117)
380 3qqz_A Putative uncharacterize 62.8 61 0.0021 33.6 12.4 109 16-137 21-141 (255)
381 3azo_A Aminopeptidase; POP fam 62.7 1.8E+02 0.0063 33.8 18.5 152 31-198 90-271 (662)
382 2vgx_A Chaperone SYCD; alterna 62.6 10 0.00034 35.5 5.8 49 370-418 30-82 (148)
383 1yr2_A Prolyl oligopeptidase; 62.2 1.9E+02 0.0067 34.5 18.8 119 42-174 244-372 (741)
384 3o4h_A Acylamino-acid-releasin 61.8 49 0.0017 38.3 12.9 109 25-147 115-227 (582)
385 2fp8_A Strictosidine synthase; 61.6 1.6E+02 0.0053 30.9 16.0 138 23-174 81-237 (322)
386 3htk_C E3 SUMO-protein ligase 61.3 2.3 8E-05 44.3 1.0 33 833-883 181-213 (267)
387 1na0_A Designed protein CTPR3; 61.3 15 0.00051 31.6 6.5 49 370-418 18-70 (125)
388 4abn_A Tetratricopeptide repea 61.2 62 0.0021 36.6 13.3 74 375-448 82-165 (474)
389 4gcn_A Protein STI-1; structur 60.9 6.4 0.00022 35.8 3.9 48 370-418 17-69 (127)
390 1qqe_A Vesicular transport pro 60.8 89 0.003 32.4 13.7 33 376-418 32-64 (292)
391 3b7f_A Glycosyl hydrolase, BNR 60.7 69 0.0024 35.1 13.3 102 31-143 22-143 (394)
392 3o4h_A Acylamino-acid-releasin 60.4 70 0.0024 37.0 13.9 138 28-198 158-312 (582)
393 3b7f_A Glycosyl hydrolase, BNR 60.3 89 0.003 34.1 14.1 114 22-143 55-204 (394)
394 4gco_A Protein STI-1; structur 60.1 7.1 0.00024 35.4 4.1 50 369-418 55-108 (126)
395 1zfo_A LAsp-1; LIM domain, zin 59.5 0.81 2.8E-05 31.2 -1.9 29 833-879 3-31 (31)
396 2yho_A E3 ubiquitin-protein li 59.2 1.4 4.8E-05 37.2 -0.9 29 833-880 18-47 (79)
397 3n71_A Histone lysine methyltr 59.0 73 0.0025 36.5 13.3 48 371-418 319-378 (490)
398 1elr_A TPR2A-domain of HOP; HO 58.9 8.7 0.0003 33.6 4.4 14 404-417 51-64 (131)
399 2vsy_A XCC0866; transferase, g 58.3 43 0.0015 38.8 11.5 44 375-418 3-50 (568)
400 3upv_A Heat shock protein STI1 57.7 8.3 0.00028 34.3 4.1 50 369-418 46-99 (126)
401 2vje_A E3 ubiquitin-protein li 57.7 2.3 7.8E-05 34.2 0.1 32 832-882 7-41 (64)
402 1wil_A KIAA1045 protein; ring 57.4 2.5 8.6E-05 35.5 0.4 33 830-882 12-47 (89)
403 1tl2_A L10, protein (tachylect 57.4 24 0.00081 36.1 7.6 101 22-144 41-152 (236)
404 2kat_A Uncharacterized protein 57.1 7.8 0.00027 34.0 3.7 24 394-417 56-79 (115)
405 3azo_A Aminopeptidase; POP fam 57.0 1.5E+02 0.0052 34.5 16.3 150 21-190 23-207 (662)
406 3q49_B STIP1 homology and U bo 57.0 12 0.00042 33.4 5.2 50 369-418 17-70 (137)
407 1hxi_A PEX5, peroxisome target 56.8 9.5 0.00032 34.2 4.3 49 370-418 26-78 (121)
408 4b4t_Q 26S proteasome regulato 55.9 1.1E+02 0.0039 33.1 14.2 50 369-418 12-82 (434)
409 3mvd_K Regulator of chromosome 55.8 1.4E+02 0.0047 33.1 14.8 152 23-198 25-204 (423)
410 1hz4_A MALT regulatory protein 55.8 2E+02 0.007 30.3 15.9 50 369-418 61-120 (373)
411 2lni_A Stress-induced-phosphop 55.7 9.2 0.00031 33.7 4.0 50 369-418 58-111 (133)
412 3of7_A Regulator of chromosome 55.4 2.6E+02 0.009 31.4 19.9 110 23-146 205-340 (473)
413 3rkv_A Putative peptidylprolyl 55.4 8.6 0.00029 36.1 3.9 49 370-418 72-124 (162)
414 2xev_A YBGF; tetratricopeptide 55.2 14 0.00049 32.5 5.3 50 369-418 47-103 (129)
415 1nir_A Nitrite reductase; hemo 55.0 2.9E+02 0.0098 31.7 29.8 101 31-144 149-254 (543)
416 3sjl_D Methylamine dehydrogena 54.8 1.3E+02 0.0043 33.3 13.8 157 26-199 82-254 (386)
417 2fo7_A Synthetic consensus TPR 54.7 33 0.0011 29.6 7.7 49 370-418 10-62 (136)
418 4gyw_A UDP-N-acetylglucosamine 54.7 29 0.00098 42.1 9.3 44 614-658 93-136 (723)
419 4g1t_A Interferon-induced prot 54.1 2.5E+02 0.0085 30.7 22.2 49 370-418 60-121 (472)
420 1elw_A TPR1-domain of HOP; HOP 53.9 11 0.00037 32.2 4.1 50 369-418 46-99 (118)
421 3sz7_A HSC70 cochaperone (SGT) 53.4 10 0.00035 35.7 4.1 50 369-418 53-106 (164)
422 2pzi_A Probable serine/threoni 53.4 25 0.00087 42.1 8.6 22 539-560 539-560 (681)
423 3gyz_A Chaperone protein IPGC; 53.0 10 0.00034 36.0 3.9 50 369-418 78-131 (151)
424 2xdw_A Prolyl endopeptidase; a 52.9 3.5E+02 0.012 32.0 30.0 161 23-198 75-265 (710)
425 1elr_A TPR2A-domain of HOP; HO 52.7 15 0.0005 32.1 4.9 24 394-417 7-30 (131)
426 2vyi_A SGTA protein; chaperone 52.1 12 0.0004 32.7 4.1 50 369-418 54-107 (131)
427 1a17_A Serine/threonine protei 51.9 24 0.00081 32.4 6.4 49 370-418 22-74 (166)
428 1a12_A RCC1, regulator of chro 51.8 2.7E+02 0.0093 30.5 18.4 71 22-97 111-190 (413)
429 3kya_A Putative phosphatase; s 51.7 3.2E+02 0.011 31.2 18.7 61 24-85 141-212 (496)
430 2fo7_A Synthetic consensus TPR 51.3 23 0.00078 30.7 6.0 50 369-418 43-96 (136)
431 3nf1_A KLC 1, kinesin light ch 50.6 1.8E+02 0.0063 29.2 14.0 30 389-418 25-54 (311)
432 3oky_B Putative uncharacterize 50.6 13 0.00045 43.3 5.0 62 24-85 405-489 (565)
433 2ifu_A Gamma-SNAP; membrane fu 50.2 53 0.0018 34.5 9.7 23 537-559 158-180 (307)
434 3as5_A MAMA; tetratricopeptide 49.9 30 0.001 32.1 6.9 50 369-418 50-103 (186)
435 1zbd_B Rabphilin-3A; G protein 49.8 18 0.0006 33.8 4.9 75 785-881 15-89 (134)
436 2kck_A TPR repeat; tetratricop 49.8 9.1 0.00031 32.5 2.8 50 369-418 48-104 (112)
437 2ea5_A Cell growth regulator w 49.4 3 0.0001 34.0 -0.4 29 833-880 15-44 (68)
438 1yr2_A Prolyl oligopeptidase; 49.4 2.5E+02 0.0086 33.5 16.8 161 22-198 109-300 (741)
439 2xcb_A PCRH, regulatory protei 49.1 13 0.00043 34.1 3.9 49 370-418 61-113 (142)
440 2qfc_A PLCR protein; TPR, HTH, 48.7 1.9E+02 0.0066 29.6 13.8 26 393-418 77-102 (293)
441 3l6v_A GYRA, DNA gyrase subuni 48.6 3E+02 0.01 30.0 21.1 166 22-198 99-313 (370)
442 3fvz_A Peptidyl-glycine alpha- 48.5 2.6E+02 0.0088 29.2 15.1 96 23-120 144-250 (329)
443 2dba_A Smooth muscle cell asso 48.4 12 0.0004 33.9 3.5 49 370-418 74-126 (148)
444 1nir_A Nitrite reductase; hemo 48.4 3.6E+02 0.012 30.9 19.9 149 24-198 181-352 (543)
445 3urz_A Uncharacterized protein 47.6 34 0.0012 33.6 7.1 48 370-418 13-81 (208)
446 3t6p_A Baculoviral IAP repeat- 47.5 3.2 0.00011 45.6 -0.7 30 832-880 294-324 (345)
447 2fbn_A 70 kDa peptidylprolyl i 47.5 24 0.00083 34.2 6.0 49 370-418 47-115 (198)
448 2vgx_A Chaperone SYCD; alterna 47.4 14 0.00047 34.5 3.9 49 370-418 64-116 (148)
449 3q49_B STIP1 homology and U bo 47.0 15 0.00052 32.7 4.1 50 369-418 51-104 (137)
450 1jof_A Carboxy-CIS,CIS-muconat 46.8 2.9E+02 0.0099 29.3 17.5 100 39-147 117-224 (365)
451 3no2_A Uncharacterized protein 46.5 2E+02 0.0067 29.6 13.3 111 24-146 79-194 (276)
452 1hh8_A P67PHOX, NCF-2, neutrop 45.8 27 0.00094 33.9 6.1 49 370-418 15-64 (213)
453 1a17_A Serine/threonine protei 45.6 16 0.00055 33.7 4.1 50 369-418 55-108 (166)
454 1hh8_A P67PHOX, NCF-2, neutrop 45.6 51 0.0017 31.8 8.1 50 369-418 45-98 (213)
455 1na0_A Designed protein CTPR3; 45.1 18 0.0006 31.1 4.1 50 369-418 51-104 (125)
456 2fbn_A 70 kDa peptidylprolyl i 45.0 14 0.00048 36.0 3.7 49 370-418 97-149 (198)
457 3al9_A Plexin-A2; beta-propell 44.6 30 0.001 40.3 6.9 60 23-85 401-470 (539)
458 3pe7_A Oligogalacturonate lyas 44.4 3.1E+02 0.01 28.9 17.1 86 22-110 188-284 (388)
459 3ro3_A PINS homolog, G-protein 44.4 24 0.00083 31.8 5.1 50 369-418 57-116 (164)
460 1ouv_A Conserved hypothetical 43.8 1.4E+02 0.0047 30.1 11.5 49 370-418 47-105 (273)
461 2e2e_A Formate-dependent nitri 43.4 33 0.0011 32.3 6.1 129 371-520 20-160 (177)
462 3nvq_A Semaphorin-7A; beta-pro 43.1 21 0.00072 41.9 5.2 61 22-85 362-438 (590)
463 1wp5_A Topoisomerase IV; broke 42.8 3.4E+02 0.012 28.9 22.3 162 22-198 92-274 (323)
464 3qww_A SET and MYND domain-con 42.5 18 0.00063 40.9 4.5 50 369-418 348-409 (433)
465 3rkv_A Putative peptidylprolyl 42.0 39 0.0013 31.4 6.2 49 370-418 20-90 (162)
466 3urz_A Uncharacterized protein 41.9 17 0.00057 36.0 3.7 50 369-418 62-115 (208)
467 2ond_A Cleavage stimulation fa 41.0 2.4E+02 0.0084 29.1 13.2 28 391-418 99-126 (308)
468 3k9i_A BH0479 protein; putativ 40.8 53 0.0018 28.5 6.6 48 370-418 36-88 (117)
469 2lri_C Autoimmune regulator; Z 40.3 8.2 0.00028 31.3 0.8 30 832-880 11-40 (66)
470 1zvu_A Topoisomerase IV subuni 39.9 3.1E+02 0.011 32.6 14.4 153 29-199 470-631 (716)
471 3f6q_B LIM and senescent cell 39.8 4.9 0.00017 32.6 -0.6 32 832-880 10-41 (72)
472 3qou_A Protein YBBN; thioredox 39.8 1.4E+02 0.0049 30.7 11.0 113 540-657 123-243 (287)
473 4aez_C MAD3, mitotic spindle c 39.6 28 0.00096 35.3 4.9 114 546-708 54-174 (223)
474 2r5s_A Uncharacterized protein 39.4 26 0.0009 33.3 4.6 49 370-418 15-67 (176)
475 3ol2_B Plexin-B1; beta-propell 38.8 58 0.002 37.7 8.0 59 23-85 388-455 (528)
476 2w18_A PALB2, fancn, partner a 38.7 4.1E+02 0.014 28.8 17.4 51 32-84 194-245 (356)
477 1zi0_A DNA gyrase subunit A; b 38.1 3.8E+02 0.013 28.2 21.1 160 22-198 95-274 (307)
478 1p5q_A FKBP52, FK506-binding p 38.0 61 0.0021 34.7 7.8 49 370-418 156-223 (336)
479 2r5s_A Uncharacterized protein 38.0 2.5E+02 0.0085 26.0 12.4 42 617-659 93-134 (176)
480 3qwp_A SET and MYND domain-con 38.0 54 0.0018 36.9 7.6 49 370-418 338-398 (429)
481 3sre_A PON1, serum paraoxonase 37.9 4.2E+02 0.014 28.6 15.4 55 30-84 59-133 (355)
482 2oiz_A Aromatic amine dehydrog 37.4 2.6E+02 0.0089 29.9 13.0 113 26-146 54-181 (361)
483 2v5f_A Prolyl 4-hydroxylase su 37.2 32 0.0011 29.8 4.4 49 370-418 14-73 (104)
484 1npe_A Nidogen, entactin; glyc 37.1 3.3E+02 0.011 27.2 21.8 113 23-147 37-155 (267)
485 1z68_A Fibroblast activation p 37.0 56 0.0019 39.0 8.0 73 24-106 62-146 (719)
486 2xzh_A Clathrin heavy chain 1; 36.9 2.3E+02 0.008 30.6 11.7 132 5-148 182-333 (365)
487 4g26_A Pentatricopeptide repea 36.8 3.7E+02 0.013 30.5 14.7 45 614-658 156-200 (501)
488 4i17_A Hypothetical protein; T 36.5 28 0.00094 34.4 4.4 49 370-418 51-103 (228)
489 1ijq_A LDL receptor, low-densi 36.3 3.9E+02 0.013 27.8 21.0 153 23-198 78-235 (316)
490 2xdw_A Prolyl endopeptidase; a 36.1 5.9E+02 0.02 29.9 20.3 140 24-174 173-344 (710)
491 2wpv_A GET4, UPF0363 protein Y 36.1 2.1E+02 0.0073 30.5 11.4 103 530-648 29-149 (312)
492 3m0c_C LDL receptor, low-densi 36.0 6.6E+02 0.023 30.4 17.7 61 22-85 424-490 (791)
493 1zvt_A Topoisomerase IV subuni 35.9 3.7E+02 0.013 27.5 13.6 118 21-146 32-162 (256)
494 3iuj_A Prolyl endopeptidase; h 35.9 3.9E+02 0.013 31.5 15.3 89 24-119 236-336 (693)
495 1x61_A Thyroid receptor intera 35.9 4.5 0.00015 33.0 -1.4 31 833-880 5-35 (72)
496 2hr2_A Hypothetical protein; a 35.7 28 0.00095 33.5 4.0 49 370-418 66-129 (159)
497 3c5m_A Oligogalacturonate lyas 35.4 4.1E+02 0.014 27.8 17.2 93 22-120 188-291 (396)
498 1x4k_A Skeletal muscle LIM-pro 34.9 5.2 0.00018 32.6 -1.2 31 833-880 5-35 (72)
499 1joc_A EEA1, early endosomal a 34.9 75 0.0026 29.0 6.6 34 834-882 70-103 (125)
500 2l4z_A DNA endonuclease RBBP8, 34.7 5.3 0.00018 36.7 -1.3 30 833-880 61-90 (123)
No 1
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.36 E-value=1.3e-10 Score=145.81 Aligned_cols=372 Identities=14% Similarity=0.102 Sum_probs=246.3
Q ss_pred hhHHHHHHchhhHHHHHHhcCC---c--h---------------------hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 365 RDMWKVYLDMKEYAAALANCRD---P--L---------------------QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 365 ~~~W~~ll~~~~fe~Al~~~~~---~--~---------------------~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
+.+..++.+.|+|++|.++-+. . + ....+..++|..+...|+|.+|++.|.+..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAd 1132 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD 1132 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 4567778888888888877441 0 0 124678899999999999999999999987
Q ss_pred CCCChHHHHHHhcCcChHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHH
Q 001978 419 YILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREF 498 (987)
Q Consensus 419 ~~~~~E~v~lkFl~~~~~~~L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l 498 (987)
+...+.+|+..+.+.++.+.+..||..-....+. ..+-+++...|.. ++++ +++
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e------~~Idt~LafaYAK-l~rl-------------------eel 1186 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE------SYVETELIFALAK-TNRL-------------------AEL 1186 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc------ccccHHHHHHHHh-hcCH-------------------HHH
Confidence 6677889999999999999999999854332211 1233466666653 2322 245
Q ss_pred HHHHhhccccCCHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHHhHC
Q 001978 499 RAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLD 578 (987)
Q Consensus 499 ~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~~~~li~k~~~~Ll~~~ 578 (987)
..|+..... -+...+-+.+.+.|+.++++.+....++|..++..|++.|+|++|++...+-.+ .+.+.+.+...++..
T Consensus 1187 e~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n-~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1187 EEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS-TRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCC-HHHHHHHHHHHhhhh
Confidence 666653211 122346678888999999999999999999999999999999999999998776 465555544444321
Q ss_pred h-HHHHHHHHcCCCCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHH
Q 001978 579 A-YETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQ 657 (987)
Q Consensus 579 p-~~ti~~l~~~~~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~ 657 (987)
- ..+...-+. -..+|+.+ +.+..|.... ..-++++.++|.-+.-. ..-..+++.+-.||+++. ++++++.++
T Consensus 1265 Ef~LA~~cgl~-Iiv~~deL-eeli~yYe~~---G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~-peklmEhlk 1337 (1630)
T 1xi4_A 1265 EFRLAQMCGLH-IVVHADEL-EELINYYQDR---GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLE 1337 (1630)
T ss_pred HHHHHHHHHHh-hhcCHHHH-HHHHHHHHHc---CCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC-HHHHHHHHH
Confidence 1 111111111 11233322 2322222111 13567999998876433 234567788888999998 589999998
Q ss_pred HhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHhc-----CHHHHHHHhhccCCCHHHHHHH
Q 001978 658 CKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQV-----DPELAMAEADKVEDDEDLRKKL 732 (987)
Q Consensus 658 ~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~~-----di~lA~~~~~~~~~d~~~~kkL 732 (987)
-.. ..-+...++|.|.+...+.+.|+||.+-|.|+.|+..++++ +.+.-++.+.+.. +.+ |
T Consensus 1338 ~f~---------~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~-n~e----l 1403 (1630)
T 1xi4_A 1338 LFW---------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA-NVE----L 1403 (1630)
T ss_pred HHH---------HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccc-cHH----H
Confidence 762 34678899999999999999999999999999999888873 2344444554544 455 7
Q ss_pred HHHHHHHHhccccCCChhhHHHHHHHHHhcCCCcCcccccCCCCCCcchHHHHHHHHHHH
Q 001978 733 WLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSL 792 (987)
Q Consensus 733 Wl~ll~~~i~~~~~~~~~~i~~~l~~L~~~~~~l~i~dlL~~~p~~~~I~~~Kd~L~~~L 792 (987)
.-+.+.+++.... ..+...+..| .|.+....++.++-..-.++-+|.++...-
T Consensus 1404 yykai~Fyl~~~P----~~lndLl~~l---~~rlD~~R~V~l~~~~~~l~lik~yl~~vq 1456 (1630)
T 1xi4_A 1404 YYRAIQFYLEFKP----LLLNDLLMVL---SPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ 1456 (1630)
T ss_pred HHHHHHHHHhhCh----HHHHHHHHHh---hhcCChHHHHHHHHHcCChHHhHHHHHHHH
Confidence 7788888775421 2233333322 234444444444433334555555554433
No 2
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.15 E-value=4.5e-07 Score=114.32 Aligned_cols=353 Identities=13% Similarity=0.125 Sum_probs=228.4
Q ss_pred CCcccccCCce-EEEEE--CCEEEEEecCCCceEEEEEecCCCCccccceeeEeeccCCCeEEEEeCCcEEEEEcccchh
Q 001978 289 KPGSMAVSEYH-FLLLM--GNKVKVVNRISEQIIEELQFDQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGR 365 (987)
Q Consensus 289 ~p~si~lT~~h-~llL~--~~~l~vvn~l~~~~v~~~~l~~~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e~~ 365 (987)
-|++|-+++-| ++.+. ..-+.++..-++..+|...+. .+.+---+.+..++.+..+..++-+--+..+|+.
T Consensus 260 fpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris------~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 260 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS------GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred cceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc------CCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 47777666333 33332 466677777777777766652 1222222233345677778887777777777778
Q ss_pred hHHHHHHchhhHHHHHHhcCC--chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc-CCCChHHHHHHhcC----cChHHH
Q 001978 366 DMWKVYLDMKEYAAALANCRD--PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN-YILSFEEITLKFIS----VSEQDA 438 (987)
Q Consensus 366 ~~W~~ll~~~~fe~Al~~~~~--~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~-~~~~~E~v~lkFl~----~~~~~~ 438 (987)
.+=.+.-...+-+.|+.+|.. -..-+.++.++-+.||..|+|.+||++.+.+- +..--.+.+-+|.. +|+..+
T Consensus 334 iv~yi~~~l~~~~la~~~a~r~~lpGad~l~~~~F~~l~~~g~y~~AA~~aa~sp~giLRt~~ti~rfk~~~~~pgq~~p 413 (1630)
T 1xi4_A 334 IIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSP 413 (1630)
T ss_pred hhhhHhhccCCHHHHHHHHHhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHHcCCCCCCCCCH
Confidence 877444466788999999864 34568888889999999999999999999873 22334467788976 457888
Q ss_pred HHHHHHHHhhccCCch------------HHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhcc
Q 001978 439 LRTFLLRKLDNLAKDD------------KCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCK 506 (987)
Q Consensus 439 L~~YL~~kl~~l~~~~------------~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~ 506 (987)
|..|....|+.-+-+. ...+.++..|+ ++.+
T Consensus 414 ll~YF~~ll~~g~Ln~~eSlEl~r~vl~q~r~~lle~Wl-------------------------------------~e~K 456 (1630)
T 1xi4_A 414 LLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWL-------------------------------------KEDK 456 (1630)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhchHHHHHHHH-------------------------------------HhCC
Confidence 9999998776532111 11122333443 2222
Q ss_pred ccCCHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHHhHChHHHHHHH
Q 001978 507 DVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESW 586 (987)
Q Consensus 507 ~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~~~~li~k~~~~Ll~~~p~~ti~~l 586 (987)
-.. .+.+=+++..+ +...++......+-+..++..+...|++++++.+..+.....+.+ .....++..+|+.++++-
T Consensus 457 L~~-SEeLGDlv~~~-d~~lAl~iY~~a~~~~Kvi~~l~~~gq~~ki~~Y~~~~~~~pDy~-~ll~~~~~~~P~~~~~fa 533 (1630)
T 1xi4_A 457 LEC-SEELGDLVKSV-DPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWI-FLLRNVMRISPDQGQQFA 533 (1630)
T ss_pred ccc-cHHHHHHHHhc-ChHHHHHHHHhcCCcHHHHHHHHHhCCHHHHHHHHhccCCCccHH-HHHHHHhhcChHHHHHHH
Confidence 111 11223444443 345666666777888889999999999999999988865323333 223455567899887754
Q ss_pred H---cC--CCCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHH-HHHHhh
Q 001978 587 M---TT--NNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLR-FLQCKF 660 (987)
Q Consensus 587 ~---~~--~~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~-fL~~~~ 660 (987)
. +. +.+|+.+++..|+... .-.++..||-.+++.+...+..+...++++-....+ .+-+ .|...
T Consensus 534 ~~L~~~~~p~~d~~~ivd~f~~~~-------~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~p--qvadail~~~- 603 (1630)
T 1xi4_A 534 QMLVQDEEPLADITQIVDVFMEYN-------LIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAP--QVADAILGNQ- 603 (1630)
T ss_pred HHHhcCCCCccCHHHHHHHHHhcC-------cHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccch--hHHHHHHhcC-
Confidence 3 32 3567777787777643 245688888877777766677899999998877653 2222 22221
Q ss_pred CCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh-cCHHHHHH
Q 001978 661 GKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ-VDPELAMA 717 (987)
Q Consensus 661 ~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~-~di~lA~~ 717 (987)
.. .+||-..+-.+|++. |+++.|++.+-+ .||..++.
T Consensus 604 ------~f-thyd~~~IA~LCE~a-------------Gl~qrale~y~d~~dikR~~~ 641 (1630)
T 1xi4_A 604 ------MF-THYDRAHIAQLCEKA-------------GLLQRALEHFTDLYDIKRAVV 641 (1630)
T ss_pred ------cc-ccccHHHHHHHHHHc-------------CcHHHHHHhcCCHHHHHHHhh
Confidence 11 589999999999764 566666666655 55555443
No 3
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.12 E-value=6.4e-10 Score=126.63 Aligned_cols=368 Identities=13% Similarity=0.078 Sum_probs=168.7
Q ss_pred HHc-hhhHHHHHHhcCCchhHhHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCChHHHHHHhcCcChHHHHHHHHHHHhhc
Q 001978 371 YLD-MKEYAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKLDN 449 (987)
Q Consensus 371 ll~-~~~fe~Al~~~~~~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~~~E~v~lkFl~~~~~~~L~~YL~~kl~~ 449 (987)
+++ .|+.++|.++++.-.+ +.+....|..++.+|++.+|.+.|.+..+...|..|+......++.+.+..|+..-.+.
T Consensus 12 ll~~~~~ld~A~~fae~~~~-~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERCNE-PAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 444 4679999999875322 24888999999999999999999999876667888888887788888888888864443
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHcCChhHHHH
Q 001978 450 LAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEELVF 529 (987)
Q Consensus 450 l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~ 529 (987)
++. . .+.+=|+.+|. +++++ .+...|++.+. .-....+-+.+...|..+++..
T Consensus 91 ~~~-~-----~i~~~Li~~Y~-Klg~l-------------------~e~e~f~~~pn-~~a~~~IGd~~~~~g~yeeA~~ 143 (449)
T 1b89_A 91 ARE-S-----YVETELIFALA-KTNRL-------------------AELEEFINGPN-NAHIQQVGDRCYDEKMYDAAKL 143 (449)
T ss_dssp -------------------------CH-------------------HHHTTTTTCC-----------------CTTTHHH
T ss_pred Ccc-c-----hhHHHHHHHHH-HhCCH-------------------HHHHHHHcCCc-HHHHHHHHHHHHHcCCHHHHHH
Confidence 221 1 11222334443 22222 22345554321 1122334456677899999999
Q ss_pred HHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHHhHC-hHHHHHHHHcCCCCCCCcchhhhhhcCCCC
Q 001978 530 FASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLD-AYETVESWMTTNNLNPRKLIPAMMRYSSEP 608 (987)
Q Consensus 530 ~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~~~~li~k~~~~Ll~~~-p~~ti~~l~~~~~ld~~~lip~L~~~~~~~ 608 (987)
+....+.|..++..+++.|+|.+|++...+..+ ...+..-....+... =+.+....+. -...|+.+.....-|.+.
T Consensus 144 ~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~-~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~~lv~~Yek~- 220 (449)
T 1b89_A 144 LYNNVSNFGRLASTLVHLGEYQAAVDGARKANS-TRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDR- 220 (449)
T ss_dssp HHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTC-HHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHHHHHHHHHHT-
T ss_pred HHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCC-chhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHHHHHHHHHHC-
Confidence 999999999999999999999999999988765 344444333333321 2222111111 123444433221122111
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcce
Q 001978 609 HAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMR 688 (987)
Q Consensus 609 ~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~ 688 (987)
..-+.++.+|+.-+.-. ..-..+.+.+-.||+++. ++++++.|+... ..-++..++|.|.+...+.
T Consensus 221 ---G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p~k~~ehl~~~~---------~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 221 ---GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFW---------SRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp ---TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHS---------TTSCHHHHHHHHHTTTCHH
T ss_pred ---CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHH---------HHhcCcHHHHHHHHHHHHH
Confidence 13567889999877543 233567777888999998 689999999872 3579999999999999999
Q ss_pred eeehhhhccccHHHHHHHHHhc-----CHHHHHHHhhccCCCHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHhcC
Q 001978 689 ACVHIYGMMSMHEEAVALALQV-----DPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETD 763 (987)
Q Consensus 689 ~~v~L~~~~g~~~eAl~l~l~~-----di~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~~~ 763 (987)
+.|+||..-+.|+.|+..++++ |-+.-++++.++. +.+ |.-+.+.+++.... ..+...+..| .
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~-n~e----lyYkai~fyl~~~p----~~l~~ll~~l---~ 354 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA-NVE----LYYRAIQFYLEFKP----LLLNDLLMVL---S 354 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCS-STH----HHHHHHHHHHHHCG----GGHHHHHHHH---G
T ss_pred HHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchh-HHH----HHHHHHHHHHhcCH----HHHHHHHHHH---H
Confidence 9999999999999999999983 4677778777775 334 77788887775421 2344444433 2
Q ss_pred CCcCcccccCCCCCCcchHHHHHHHHHHHHHH
Q 001978 764 GLLKIEDILPFFPDFALIDDFKEAICSSLDDY 795 (987)
Q Consensus 764 ~~l~i~dlL~~~p~~~~I~~~Kd~L~~~L~~y 795 (987)
|.+....++.+|...-.++-+|.+|..+-...
T Consensus 355 ~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n 386 (449)
T 1b89_A 355 PRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN 386 (449)
T ss_dssp GGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC
T ss_pred hccCcHHHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 34444444444444444555666665444433
No 4
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=98.56 E-value=0.00075 Score=83.69 Aligned_cols=92 Identities=5% Similarity=-0.111 Sum_probs=68.2
Q ss_pred CceeEEEEe----CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 22 GVITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 22 ~~i~~~~v~----nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
..+++++.+ ++.++.|..+|.|..+|+ .+..+..+.-+ ...|..+-.+|.|.++++++. +|....++
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~---dg~v~vwd 256 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-----MSNVSFAVFHPTLPIIISGSE---DGTLKIWN 256 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC-----SSCEEEEEECSSSSEEEEEET---TSCEEEEE
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC-----CCCEEEEEEcCCCCEEEEEeC---CCeEEEEE
Confidence 457888884 568999999999999999 55445545433 367999999999999888887 89888887
Q ss_pred cCCCCceeccCCCCceEEEEeecCC
Q 001978 97 AKWSKPRVLSKLKGLVVNAVAWNRQ 121 (987)
Q Consensus 97 ~~~~k~k~L~klkg~~i~sVaw~~~ 121 (987)
....+.....+..+..|.+++|.++
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~~~~ 281 (814)
T 3mkq_A 257 SSTYKVEKTLNVGLERSWCIATHPT 281 (814)
T ss_dssp TTTCSEEEEECCSSSSEEEEEECTT
T ss_pred CCCCcEEEEeecCCCcEEEEEEccC
Confidence 7654432222234468999999943
No 5
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=98.08 E-value=0.0039 Score=67.44 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=105.7
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.|++++.+++ .++.|. +|.|..+|+ .+.....+...........|..+-.+|.|..+++++. +|..+.++.
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~ 126 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE---ASTLSIWDL 126 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES---SSEEEEEEC
T ss_pred CCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC---CCcEEEEEC
Confidence 456899998754 677776 899999999 5443322221110112468999999999999998887 898888877
Q ss_pred CCCCceeccCC--CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 98 KWSKPRVLSKL--KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 98 ~~~k~k~L~kl--kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
...+.+....+ ....|.+++|++. ...++.|+.+|.|+...+... +.+..+....++|+++.|..
T Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 127 AAPTPRIKAELTSSAPACYALAISPD------SKVCFSCCSDGNIAVWDLHNQ-------TLVRQFQGHTDGASCIDISN 193 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECT
T ss_pred CCCCcceeeecccCCCceEEEEECCC------CCEEEEEeCCCcEEEEeCCCC-------ceeeeeecccCceEEEEECC
Confidence 66553333222 3357999999942 236889999999998877543 22223332236799999862
Q ss_pred eccCCCceEEEEEECCCeEEEEec
Q 001978 176 ASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~g 199 (987)
+.+.++.++....++.|.-
T Consensus 194 -----~~~~l~~~~~dg~i~~~d~ 212 (337)
T 1gxr_A 194 -----DGTKLWTGGLDNTVRSWDL 212 (337)
T ss_dssp -----TSSEEEEEETTSEEEEEET
T ss_pred -----CCCEEEEEecCCcEEEEEC
Confidence 2357777777888887753
No 6
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.08 E-value=6.7e-05 Score=85.48 Aligned_cols=172 Identities=14% Similarity=0.108 Sum_probs=119.1
Q ss_pred HHHHHHhhccccCCHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCC-C-------------
Q 001978 497 EFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPA-V------------- 562 (987)
Q Consensus 497 ~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~-~------------- 562 (987)
++...++.+...++.+.+...++...- +..++.+|++.++|+.|+..+...+ +
T Consensus 258 k~~ehl~~~~~~ini~k~~~~~~~~~~-------------w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~k 324 (449)
T 1b89_A 258 KMREHLELFWSRVNIPKVLRAAEQAHL-------------WAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK 324 (449)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHTTTC-------------HHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHH-------------HHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhc
Confidence 334444444455677766666665333 3446667888888888888776653 2
Q ss_pred --chhhHHhhHHHHHhHChHHHHHHHHcC-CCCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHH
Q 001978 563 --PIDLQYKFAPDLIMLDAYETVESWMTT-NNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLL 639 (987)
Q Consensus 563 --~~~li~k~~~~Ll~~~p~~ti~~l~~~-~~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~l 639 (987)
..+++|+=+...+...|....+++.-. +.+|+.++|..+..-.. -.....||+.+-. ...+.+.+.|
T Consensus 325 v~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~-------l~l~~~yl~~v~~---~n~~~vneal 394 (449)
T 1b89_A 325 VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQ-------LPLVKPYLRSVQN---HNNKSVNESL 394 (449)
T ss_dssp CSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTC-------TTTTHHHHHHHHT---TCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHcCC-------cHHHHHHHHHHHH---hhHHHHHHHH
Confidence 258899988999999999877777654 48999999988765432 1246679887653 3568999999
Q ss_pred HHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcC---cceeeehhhhccccHH
Q 001978 640 LSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEK---RMRACVHIYGMMSMHE 701 (987)
Q Consensus 640 l~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~---~~~~~v~L~~~~g~~~ 701 (987)
-.||++.+|-+.|..-+... .+||--.....+++|. |.+-+++||.+.+.|+
T Consensus 395 n~l~ieeed~~~lr~si~~~----------~nfd~~~l~~~le~h~l~~~r~iaa~~~~~~~~~~ 449 (449)
T 1b89_A 395 NNLFITEEDYQALRTSIDAY----------DNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWK 449 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHC----------CCSCHHHHHHHHTTCSSHHHHHHHHHHHC------
T ss_pred HHHHHhhhhHHHHHHHHHHh----------cCcCHHHHHHHHhcCchHHHHHHHHHHHHhccCCC
Confidence 99999988878888877776 5788776666677886 4568899998887763
No 7
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.08 E-value=7.5e-08 Score=107.87 Aligned_cols=364 Identities=17% Similarity=0.122 Sum_probs=227.1
Q ss_pred HHchhhHHHHHHhcCCc---hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc-CCCChHHHHHHhcCcChHHHHHHHHHHH
Q 001978 371 YLDMKEYAAALANCRDP---LQRDQVYLVQAEAAFATKDFHRAASFYAKIN-YILSFEEITLKFISVSEQDALRTFLLRK 446 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~~---~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~-~~~~~E~v~lkFl~~~~~~~L~~YL~~k 446 (987)
|+.-|+|..|.+.|+.. ..=.+|. ...++.++|.-|..+=-... ..+.-++++..+-+.|..+.|+..|+..
T Consensus 180 LV~L~~yq~AVdaArKAns~ktWKeV~----~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 180 LVHLGEYQAAVDGARKANSTRTWKEVC----FACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp SSSCSGGGSSTTTTTTCCSSCSHHHHT----HHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHH----HHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 56667777777777642 2223444 35666888877655444443 2356677888777888888888888888
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHcCChhH
Q 001978 447 LDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEE 526 (987)
Q Consensus 447 l~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~ 526 (987)
+..-+.+..++.. |.-||.. . + .+++...|+-+...++...+...++....-.+
T Consensus 256 lglErAHmGmFTE-----LaILYsK-Y---~-----------------PeKlmEHlklf~sriNipKviracE~ahLW~E 309 (624)
T 3lvg_A 256 LGLERAHMGMFTE-----LAILYSK-F---K-----------------PQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 309 (624)
T ss_dssp TTSTTCCHHHHHH-----HHHHHHS-S---C-----------------TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHH
T ss_pred hCCCchhHHHHHH-----HHHHHHh-c---C-----------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHH
Confidence 7633333333322 2223331 1 0 13445555555556676666666666555444
Q ss_pred HHHHHHhHhhHHHHHHHHHhcccHHHHHHHHhCCC-C---------------chhhHHhhHHHHHhHChHHHHHHHHcC-
Q 001978 527 LVFFASLKEQHEIVVHHYIQQGEAKKALQMLRKPA-V---------------PIDLQYKFAPDLIMLDAYETVESWMTT- 589 (987)
Q Consensus 527 ~l~~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~-~---------------~~~li~k~~~~Ll~~~p~~ti~~l~~~- 589 (987)
++-+|++-.+|+.|...+...+ + ..+++||=..--++.-|....++|.-.
T Consensus 310 -------------lvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~ 376 (624)
T 3lvg_A 310 -------------LVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLS 376 (624)
T ss_dssp -------------HHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHC
T ss_pred -------------HHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhcc
Confidence 4557888888988887776542 1 258889888878888888777777654
Q ss_pred CCCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCc
Q 001978 590 NNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPE 669 (987)
Q Consensus 590 ~~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~ 669 (987)
+++|+.++|..+.+-.. -.....||+.+ .+...+.+.+.|-+||++.+|-+.|..-+...
T Consensus 377 prlDh~RvV~~~~k~~~-------LpLIkpYL~~V---q~~N~~aVNeAln~L~IEEEDy~~LR~SId~y---------- 436 (624)
T 3lvg_A 377 PRLDHTRAVNYFSKVKQ-------LPLVKPYLRSV---QNHNNKSVNESLNNLFITEEDYQALRTSIDAY---------- 436 (624)
T ss_dssp TTCCSTTTHHHHHTTTC-------GGGGTGGGTSC---CCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSC----------
T ss_pred ccCChHHHHHHHHhcCC-------chhhHHHHHHH---HHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHh----------
Confidence 48999999988775322 11233466543 34457889999999999987766665444433
Q ss_pred ccCChHHHHHHHHhcC---cceeeehhhhccccHHHHHHHHHh-cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhcccc
Q 001978 670 FFYDPKYALRLCLKEK---RMRACVHIYGMMSMHEEAVALALQ-VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEK 745 (987)
Q Consensus 670 ~~yd~~~aLrlc~~~~---~~~~~v~L~~~~g~~~eAl~l~l~-~di~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~~~~ 745 (987)
.+||--.....+++|. |.+-+++||.+.+.|++|+.+..+ +-...|++.|.... |.+ +=..|+++++....
T Consensus 437 dNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDAietAa~S~-~~e----laeeLL~yFv~~g~ 511 (624)
T 3lvg_A 437 DNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESK-DTE----LAEELLQWFLQEEK 511 (624)
T ss_dssp CCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCC-CTT----HHHHHHHHHHHHCS
T ss_pred ccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHcC-CHH----HHHHHHHHHHHcCc
Confidence 5688666666677786 567899999999999999999887 55888999985543 554 67788888887642
Q ss_pred CCChhhHHHHHHHHHhcCCCcCcccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001978 746 GTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQEMND 808 (987)
Q Consensus 746 ~~~~~~i~~~l~~L~~~~~~l~i~dlL~~~p~~~~I~~~Kd~L~~~L~~y~~~i~~l~~~m~~ 808 (987)
. .+ ....|=.|-.+|...-||.+---+--++-...+++.++++|+.+++.+.....+
T Consensus 512 ~----Ec--F~a~LytCYdLlrpDvVlElaW~~~l~D~~mPY~Iq~~re~~~kv~~L~~~~~~ 568 (624)
T 3lvg_A 512 R----EC--FGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKLDASESL 568 (624)
T ss_dssp T----HH--HHHHHHHTSSSSSCHHHHHHHHHSCSSSCCCCSSTTTTTTHHHHHHHHHHHHHH
T ss_pred h----HH--HHHHHHHHhhccChHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12 122333343344433332220000001111123355677888888877655443
No 8
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.81 E-value=0.058 Score=60.62 Aligned_cols=363 Identities=14% Similarity=0.158 Sum_probs=202.7
Q ss_pred EeCCEEEEEecCC---eEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE-EEecCCC-Cc
Q 001978 29 AGNDVIVLGTSKG---WLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF-YTHAKWS-KP 102 (987)
Q Consensus 29 v~nn~l~~~~~~g---~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~-Y~~~~~~-k~ 102 (987)
-+++++|+=-..| .|..+|+ +|+++.+-++.. ...-++|+-.-+.+.. |... -++.... |.
T Consensus 33 ESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~A--------dsAIMnP~~~iiALra-----g~~lQiFnle~K~kl 99 (494)
T 1bpo_A 33 ESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISA--------DSAIMNPASKVIALKA-----GKTLQIFNIEMKSKM 99 (494)
T ss_dssp EETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCC--------SEEEECSSSSCEEEEE-----TTEEEEEETTTTEEE
T ss_pred ecCceEEEEecCCCCCeEEEEECCCCCcceeccccc--------ceeeeCCCCcEEEEec-----CCeEEEEchHHhhhh
Confidence 4566788776544 8999999 999987766642 3355788887554443 4443 3343332 22
Q ss_pred eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCc
Q 001978 103 RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGT 182 (987)
Q Consensus 103 k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~ 182 (987)
|.-. -.-+|.-=-|-.+ ..+-+=|.+. ||.-.+++...+.|-+..--+|.+ ..|.+-..+ .+.
T Consensus 100 ks~~--~~e~VvfWkWis~-------~~l~lVT~ta-VyHWsi~~~s~P~kvFdR~~~L~~--~QIInY~~d-----~~~ 162 (494)
T 1bpo_A 100 KAHT--MTDDVTFWKWISL-------NTVALVTDNA-VYHWSMEGESQPVKMFDRHSSLAG--CQIINYRTD-----AKQ 162 (494)
T ss_dssp EEEE--CSSCCCEEEEEET-------TEEEEECSSE-EEEEESSSSCCCEEEEECCGGGTT--CEEEEEEEC-----TTS
T ss_pred ccee--cCCCceEEEecCC-------CeEEEEcCCe-eEEecccCCCCchhheecchhccc--ceEEEEEEC-----CCC
Confidence 2211 0124545555521 2455556665 998888654223232222223332 235544443 344
Q ss_pred eEEEEEEC---CCeEEEEecCCchHHHHhhhhcccc-------cccc--cCCCcCCCcceeeeccCCCceEEEeecCc--
Q 001978 183 RYYVMAVT---PTRLYSFTGFGSLDTVFASYLDRAV-------HFME--LPGEILNSELHFFIKQRRAVHFAWLSGAG-- 248 (987)
Q Consensus 183 ~~~i~ast---~~rly~f~g~~~l~~lf~~~~~~~~-------~~~e--lp~~~~~s~l~~~~~~~~~~~faW~t~~g-- 248 (987)
+|++++-- +.++ .| .-+||+.-++.+. .|.. ++++...+.+ -.|||-+..|
T Consensus 163 kW~~l~GI~~~~~~v---~G---~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~l---------f~fa~r~~~g~k 227 (494)
T 1bpo_A 163 KWLLLTGISAQQNRV---VG---AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTL---------FCFAVRGQAGGK 227 (494)
T ss_dssp SEEEEEEEEEETTEE---EE---EEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEE---------EEEEECSTTCCE
T ss_pred CeEEEEeecccCCcc---cc---eEEEeeccccccchheeeeeeeEEEecCCCCCCceE---------EEEEEecCCCcE
Confidence 66665422 2322 23 1123332222111 1211 1211111111 1356665544
Q ss_pred eEEEEeecCCCCCCCCCCCccccccccccccccCCCCCCCCCcccccC-CceEEEEE--CCEEEEEecCCCceEEEEEec
Q 001978 249 IYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVS-EYHFLLLM--GNKVKVVNRISEQIIEELQFD 325 (987)
Q Consensus 249 i~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~p~si~lT-~~h~llL~--~~~l~vvn~l~~~~v~~~~l~ 325 (987)
+.+=+++.... ..+.+... ..+. .+|+.....=|++|-++ .|-++.+. ..-|.+++..++..+|...+.
T Consensus 228 Lhi~Ei~~~~~-----~~~~f~kk--~vdv-~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs 299 (494)
T 1bpo_A 228 LHIIEVGTPPT-----GNQPFPKK--AVDV-FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (494)
T ss_dssp EEEEECSCCCT-----TCCCCCCE--EEEC-CCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEEEcCCCcc-----CCCCccce--eeee-eCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc
Confidence 33333332100 11112110 0111 12222223348888666 34444433 578888888888888888873
Q ss_pred CCCCccccceeeEeeccCCCeEEEEeCCcEEEEEcccchhhHHHHHHchhhHHHHHHhcCC--chhHhHHHHHHHHHHHh
Q 001978 326 QTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCRD--PLQRDQVYLVQAEAAFA 403 (987)
Q Consensus 326 ~~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e~~~~W~~ll~~~~fe~Al~~~~~--~~~~~~V~~~~~~~l~~ 403 (987)
.+.+.--+.+..++-+..+..++-+.....+|+..+=++.-...+-+.|+++|.. -..-+..+.++-+.||.
T Consensus 300 ------~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivpyi~~~l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~ 373 (494)
T 1bpo_A 300 ------GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFA 373 (494)
T ss_dssp ------SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHHHHHHTTCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHH
T ss_pred ------CCceEEecccCCCCcEEEEccCceEEEEEEccccchhhhhhccCCHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 2344333344566889999998888888888888887555556788999999863 22345668888999999
Q ss_pred cCCHHHHHHHHHhhc-CCCChHHHHHHhcCc----ChHHHHHHHHHHHhhcc
Q 001978 404 TKDFHRAASFYAKIN-YILSFEEITLKFISV----SEQDALRTFLLRKLDNL 450 (987)
Q Consensus 404 ~g~y~~Aa~~~~~~~-~~~~~E~v~lkFl~~----~~~~~L~~YL~~kl~~l 450 (987)
.|+|.+||+.-+.+- +..--.+.+.+|... ++...|..|....|+.-
T Consensus 374 ~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 374 QGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp TTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 999999999999873 223445777899764 56778999999877643
No 9
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.80 E-value=0.00041 Score=76.33 Aligned_cols=177 Identities=3% Similarity=-0.032 Sum_probs=113.9
Q ss_pred cceehhHHHHHhhcCCCceeEEEEe------CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCC--
Q 001978 6 QVFQVDVLERYAAKGRGVITCMSAG------NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPG-- 76 (987)
Q Consensus 6 ~~f~~~~~~~~~~~~~~~i~~~~v~------nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~-- 76 (987)
|-|..+.++.....-.+.|+|++.+ +..++.+..+|.|..+|+ ....+..+.-.........|..+-..|.
T Consensus 3 ~~~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 3 CKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN 82 (366)
T ss_dssp --CCCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTT
T ss_pred ceeEEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCC
Confidence 4444443333332334679999998 567888888999999999 4555555543322222467899888888
Q ss_pred --CCeEEEEeecCCCccEEEEecCCCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccc
Q 001978 77 --GSHCIATIVGSGGAETFYTHAKWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREK 153 (987)
Q Consensus 77 --G~hlli~~~~~~~g~~~Y~~~~~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~ 153 (987)
|..+++++. +|....++....+. +.+. -....|.+++|++.. ...++.|+.+|.|....+..+ +
T Consensus 83 ~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~----~ 149 (366)
T 3k26_A 83 TSHPLLAVAGS---RGIIRIINPITMQCIKHYV-GHGNAINELKFHPRD-----PNLLLSVSKDHALRLWNIQTD----T 149 (366)
T ss_dssp TCCEEEEEEET---TCEEEEECTTTCCEEEEEE-SCCSCEEEEEECSSC-----TTEEEEEETTSCEEEEETTTT----E
T ss_pred CCCCEEEEecC---CCEEEEEEchhceEeeeec-CCCCcEEEEEECCCC-----CCEEEEEeCCCeEEEEEeecC----e
Confidence 667777776 88888877655443 2232 234689999999422 236889999999999887653 1
Q ss_pred eeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEecC
Q 001978 154 YIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTGF 200 (987)
Q Consensus 154 ~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g~ 200 (987)
....+-.+.....+|+++.|.. +.+.++.++....++.|.-.
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 150 LVAIFGGVEGHRDEVLSADYDL-----LGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp EEEEECSTTSCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESC
T ss_pred EEEEecccccccCceeEEEECC-----CCCEEEEecCCCCEEEEECC
Confidence 1222111122246799999963 33577777778888878643
No 10
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.78 E-value=4.1e-08 Score=109.94 Aligned_cols=315 Identities=14% Similarity=0.108 Sum_probs=204.4
Q ss_pred hhHHHHHHhcCCchhHhHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCChHHHHHHhcCcChHHHHHHHHHHHhhccCCch
Q 001978 375 KEYAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLKFISVSEQDALRTFLLRKLDNLAKDD 454 (987)
Q Consensus 375 ~~fe~Al~~~~~~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~~~E~v~lkFl~~~~~~~L~~YL~~kl~~l~~~~ 454 (987)
+..+.|.++|+. -....|..+-|...+..|+..+|++.|.+..+...|.+|+-.=-..++.+.|..||.---..++. .
T Consensus 39 ~~ldRa~eyA~~-~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke-~ 116 (624)
T 3lvg_A 39 GNLDRAYEFAER-CNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-S 116 (624)
T ss_dssp CCSTTTTTSSSS-CCCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS-T
T ss_pred cccHHHHHHHHH-hCCccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-c
Confidence 346666666642 11233444556677778999999999999987789999999988899999999999943332222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHcCChhHHHHHHHhH
Q 001978 455 KCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLK 534 (987)
Q Consensus 455 ~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~ 534 (987)
..-..++ -.|- +++++ .+++.||... +.-|...|-+-|-..|..+.+--+..-+
T Consensus 117 ~IDteLi-----~ayA-k~~rL-------------------~elEefl~~~-N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 117 YVETELI-----FALA-KTNRL-------------------AELEEFINGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp TTTHHHH-----HHHH-TSCSS-------------------STTTSTTSCC-SSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred ccHHHHH-----HHHH-hhCcH-------------------HHHHHHHcCC-CcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 1111222 2222 33333 2344566542 2346666777777778888776677778
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHHhH-----ChHHHHHHHHcCCCCCCCcchhhhhhcCCCCC
Q 001978 535 EQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIML-----DAYETVESWMTTNNLNPRKLIPAMMRYSSEPH 609 (987)
Q Consensus 535 ~dy~~ll~~yi~~~~~~~AL~~l~~~~~~~~li~k~~~~Ll~~-----~p~~ti~~l~~~~~ld~~~lip~L~~~~~~~~ 609 (987)
.+|..+..-++..|+|..|++.-++-+. ...+.+-...=++. ..--.+++. +.++.| +.+..+.....
T Consensus 171 sN~akLAstLV~L~~yq~AVdaArKAns-~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhadeL-~elv~~YE~~G 243 (624)
T 3lvg_A 171 SNFGRLASTLVHLGEYQAAVDGARKANS-TRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADEL-EELINYYQDRG 243 (624)
T ss_dssp CCCTTTSSSSSSCSGGGSSTTTTTTCCS-SCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCC-SGGGSSSSTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCC-hhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHHH-HHHHHHHHhCC
Confidence 8899999999999999999999888765 34444322111111 111223333 334444 33333332211
Q ss_pred CCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCccee
Q 001978 610 AKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRA 689 (987)
Q Consensus 610 ~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~ 689 (987)
.-++++.-||.=+. ....-..+.+-|--||+++. ++|++++|+-.. ...++.+++|.|.+..++.+
T Consensus 244 ---~f~ELIsLlEaglg-lErAHmGmFTELaILYsKY~-PeKlmEHlklf~---------sriNipKviracE~ahLW~E 309 (624)
T 3lvg_A 244 ---YFEELITMLEAALG-LERAHMGMFTELAILYSKFK-PQKMREHLELFW---------SRVNIPKVLRAAEQAHLWAE 309 (624)
T ss_dssp ---CCTTSTTTHHHHTT-STTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSS---------SSSCCTTTHHHHTTTTCHHH
T ss_pred ---CHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHH---------HhccHHHHHHHHHHHhhHHH
Confidence 12335555664432 12234577888888999998 489999999862 35788999999999999999
Q ss_pred eehhhhccccHHHHHHHHHhc-----CHHHHHHHhhccCCCHHHHHHHHHHHHHHHhcc
Q 001978 690 CVHIYGMMSMHEEAVALALQV-----DPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQ 743 (987)
Q Consensus 690 ~v~L~~~~g~~~eAl~l~l~~-----di~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~~ 743 (987)
.||||..-..|+.|+..++.+ |.+.-++++.+.. +.+ ++-+.+..+++.
T Consensus 310 lvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVa-N~E----iyYKAi~FYL~e 363 (624)
T 3lvg_A 310 LVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA-NVE----LYYRAIQFYLEF 363 (624)
T ss_dssp HHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCS-CSH----HHHHHHHHHTTS
T ss_pred HHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcc-hHH----HHHHHHHHHHHh
Confidence 999999999999999988873 4445555555554 233 666667766654
No 11
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.78 E-value=0.0013 Score=71.44 Aligned_cols=148 Identities=11% Similarity=0.120 Sum_probs=107.6
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.|++++.+. +.++.+..+|.|..+|+ .+..+..+.. ...+..+-++|.|.++++++. +|..+.++.
T Consensus 183 ~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~---~~~i~~~~~ 253 (337)
T 1gxr_A 183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF------TSQIFSLGYCPTGEWLAVGME---SSNVEVLHV 253 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC------SSCEEEEEECTTSSEEEEEET---TSCEEEEET
T ss_pred cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC------CCceEEEEECCCCCEEEEEcC---CCcEEEEEC
Confidence 45799999964 48999999999999999 5544444443 257899999999999999887 888888887
Q ss_pred CCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 98 ~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
...+...+.. ....|.+++|++. ...++.|+.+|.|....+..+. .+..... +.+|+++.|..
T Consensus 254 ~~~~~~~~~~-~~~~v~~~~~~~~------~~~l~~~~~dg~i~~~~~~~~~-------~~~~~~~-~~~v~~~~~s~-- 316 (337)
T 1gxr_A 254 NKPDKYQLHL-HESCVLSLKFAYC------GKWFVSTGKDNLLNAWRTPYGA-------SIFQSKE-SSSVLSCDISV-- 316 (337)
T ss_dssp TSSCEEEECC-CSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCC-------EEEEEEC-SSCEEEEEECT--
T ss_pred CCCCeEEEcC-CccceeEEEECCC------CCEEEEecCCCcEEEEECCCCe-------EEEEecC-CCcEEEEEECC--
Confidence 7666555543 3458999999942 2368889999999888776541 1122221 36799999862
Q ss_pred cCCCceEEEEEECCCeEEEE
Q 001978 178 LSNGTRYYVMAVTPTRLYSF 197 (987)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f 197 (987)
+.++++.++....++-|
T Consensus 317 ---~~~~l~~~~~dg~i~iw 333 (337)
T 1gxr_A 317 ---DDKYIVTGSGDKKATVY 333 (337)
T ss_dssp ---TSCEEEEEETTSCEEEE
T ss_pred ---CCCEEEEecCCCeEEEE
Confidence 33577777777777766
No 12
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.75 E-value=0.013 Score=65.93 Aligned_cols=149 Identities=12% Similarity=0.083 Sum_probs=105.6
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC-
Q 001978 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK- 101 (987)
Q Consensus 24 i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k- 101 (987)
+++++.+++.++.+..+|.|+.||+ .+.....+..+ ....|..+-..|.|.++++++. +|....+.....+
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~----~~~~v~~v~~s~~~~~l~~~~~---dg~i~iwd~~~~~~ 168 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETD----ESTYVASVKWSHDGSFLSVGLG---NGLVDIYDVESQTK 168 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECC----TTCCEEEEEECTTSSEEEEEET---TSCEEEEETTTCCE
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecC----CCCCEEEEEECCCCCEEEEECC---CCeEEEEECcCCeE
Confidence 4558888888888889999999999 54444444443 1468999999999999999887 8988888765543
Q ss_pred ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCC
Q 001978 102 PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNG 181 (987)
Q Consensus 102 ~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~ 181 (987)
.+.+. .....|.+++|++ ..++.|+.+|.|....+.... ..... +.-. .++|+++.|.. +
T Consensus 169 ~~~~~-~~~~~v~~~~~~~--------~~l~~~~~dg~i~i~d~~~~~---~~~~~-~~~~--~~~v~~~~~~~-----~ 228 (401)
T 4aez_A 169 LRTMA-GHQARVGCLSWNR--------HVLSSGSRSGAIHHHDVRIAN---HQIGT-LQGH--SSEVCGLAWRS-----D 228 (401)
T ss_dssp EEEEC-CCSSCEEEEEEET--------TEEEEEETTSEEEEEETTSSS---CEEEE-EECC--SSCEEEEEECT-----T
T ss_pred EEEec-CCCCceEEEEECC--------CEEEEEcCCCCEEEEecccCc---ceeeE-EcCC--CCCeeEEEEcC-----C
Confidence 33333 2345899999962 268999999999988776331 11222 2222 36799999963 3
Q ss_pred ceEEEEEECCCeEEEEec
Q 001978 182 TRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 182 ~~~~i~ast~~rly~f~g 199 (987)
.++++.++....++-|.-
T Consensus 229 ~~~l~s~~~d~~v~iwd~ 246 (401)
T 4aez_A 229 GLQLASGGNDNVVQIWDA 246 (401)
T ss_dssp SSEEEEEETTSCEEEEET
T ss_pred CCEEEEEeCCCeEEEccC
Confidence 367777777788887753
No 13
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.75 E-value=0.068 Score=59.27 Aligned_cols=162 Identities=10% Similarity=0.022 Sum_probs=108.0
Q ss_pred CCCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCCceeeEcCC--------CCCCccceeEEEeCC-CCCeEEEEeec
Q 001978 20 GRGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYDIDLSA--------GRPGEQSIHKVFVDP-GGSHCIATIVG 86 (987)
Q Consensus 20 ~~~~i~~~~v~n---n~l~~~~~~g~l~ridl-~~~~~~~~~l~~--------~~~~~~~i~~i~lDp-~G~hlli~~~~ 86 (987)
-.+.|+|++.+. +.++.|..+|.|..+|+ .+.....+.... .......|..+-..| .|..++.++.
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~- 120 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF- 120 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET-
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC-
Confidence 346799999975 78999999999999999 555443333110 011246899999999 6667777776
Q ss_pred CCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCC
Q 001978 87 SGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPE 166 (987)
Q Consensus 87 ~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~ 166 (987)
+|....++....+.....+ ....+.+++|.+.. .+..-++.|+.+|.|....+..+. .. ..+....+
T Consensus 121 --d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~d~~~~~----~~---~~~~~~~~ 187 (408)
T 4a11_B 121 --DKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVS---TKHCLVAVGTRGPKVQLCDLKSGS----CS---HILQGHRQ 187 (408)
T ss_dssp --TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSC---SSCCEEEEEESSSSEEEEESSSSC----CC---EEECCCCS
T ss_pred --CCeEEEeeCCCCccceecc-CCCceeeeEeecCC---CCCcEEEEEcCCCeEEEEeCCCcc----ee---eeecCCCC
Confidence 7888888776554333333 24579999998432 123368889999999998876531 12 22332236
Q ss_pred ceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 167 AFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
+|+++.|.. .....++.++....++-|.-
T Consensus 188 ~v~~~~~~~----~~~~ll~~~~~dg~i~i~d~ 216 (408)
T 4a11_B 188 EILAVSWSP----RYDYILATASADSRVKLWDV 216 (408)
T ss_dssp CEEEEEECS----SCTTEEEEEETTSCEEEEET
T ss_pred cEEEEEECC----CCCcEEEEEcCCCcEEEEEC
Confidence 799999863 22235666677777887753
No 14
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.66 E-value=0.035 Score=61.69 Aligned_cols=162 Identities=12% Similarity=0.027 Sum_probs=107.1
Q ss_pred CCCceeEEEEeCCEEEEEecCCeEEEEeC-CCC------CceeeEcCCCCCCccceeEEEeCCC----C---CeEEEEee
Q 001978 20 GRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAG------DSYDIDLSAGRPGEQSIHKVFVDPG----G---SHCIATIV 85 (987)
Q Consensus 20 ~~~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~------~~~~~~l~~~~~~~~~i~~i~lDp~----G---~hlli~~~ 85 (987)
-.+.|+|++.+++.++.|..+|.|..||+ ... .+..+.-+ ...|..+-..|. | .+++.++.
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-----KSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECC-----TTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecC-----CCcEEEEEEecccccCCccccEEEEEcC
Confidence 34679999999999999999999999999 544 23333322 467999999999 9 88888877
Q ss_pred cCCCccEEEEecCCCC------ceeccCCC----CceEEEEeecCCCCCCCCcce-EEEEcCCCcEEEEEecc------C
Q 001978 86 GSGGAETFYTHAKWSK------PRVLSKLK----GLVVNAVAWNRQQITEASTKE-IILGTDTGQLHEMAVDE------K 148 (987)
Q Consensus 86 ~~~~g~~~Y~~~~~~k------~k~L~klk----g~~i~sVaw~~~~~~~~st~~-iLiGt~~G~i~e~~i~~------~ 148 (987)
+|..+.++....+ .+.+.... +..|.+++|++... .+... ++.|+.+|.|+...+.. .
T Consensus 90 ---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 90 ---SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND--RLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp ---TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred ---CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC--CCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 8888877755444 34444322 35899999993210 12235 88899999999988875 2
Q ss_pred ccccceeee--eeee-----CCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 149 DKREKYIKL--LFEL-----NELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 149 ~~~e~~~k~--v~~l-----~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
.. -+ +.. .+.. .....+|+++.|.. +. .++.++....++.|.-
T Consensus 165 ~~-~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~-~l~~~~~dg~i~i~d~ 214 (397)
T 1sq9_A 165 LT-LN-WSPTLELQGTVESPMTPSQFATSVDISE-----RG-LIATGFNNGTVQISEL 214 (397)
T ss_dssp TT-TC-CCCEEEEEEEECCSSSSCCCCCEEEECT-----TS-EEEEECTTSEEEEEET
T ss_pred ce-ee-ccCcceeeeeeccccCCCCCceEEEECC-----Cc-eEEEEeCCCcEEEEEC
Confidence 11 11 110 1111 11236699999862 22 5555555777887753
No 15
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.65 E-value=0.0029 Score=68.46 Aligned_cols=152 Identities=10% Similarity=0.012 Sum_probs=107.0
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.|++++.+. +.|+.|..+|.|..+|+ .......+.-+ ...|..+-.+|.|.+++.++. +|....++.
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~ 94 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-----KLGISDVAWSSDSNLLVSASD---DKTLKIWDV 94 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TSEEEEEET
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccC-----CCceEEEEEcCCCCEEEEECC---CCEEEEEEC
Confidence 35699999985 47888999999999999 44433333322 367999999999999998887 898888877
Q ss_pred CCCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEee
Q 001978 98 KWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (987)
Q Consensus 98 ~~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~ 176 (987)
...+. +.+. -....|.+++|++. ...++.|+.+|.|....+..+ +.+..+.....+|+++.|..
T Consensus 95 ~~~~~~~~~~-~~~~~v~~~~~~~~------~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~- 159 (312)
T 4ery_A 95 SSGKCLKTLK-GHSNYVFCCNFNPQ------SNLIVSGSFDESVRIWDVKTG-------KCLKTLPAHSDPVSAVHFNR- 159 (312)
T ss_dssp TTCCEEEEEE-CCSSCEEEEEECSS------SSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEECT-
T ss_pred CCCcEEEEEc-CCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEECCCC-------EEEEEecCCCCcEEEEEEcC-
Confidence 65543 2232 23457999999943 236888999999988877543 12223333236799999862
Q ss_pred ccCCCceEEEEEECCCeEEEEec
Q 001978 177 SLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~g 199 (987)
+.++++.++....+.-|.-
T Consensus 160 ----~~~~l~~~~~d~~i~~wd~ 178 (312)
T 4ery_A 160 ----DGSLIVSSSYDGLCRIWDT 178 (312)
T ss_dssp ----TSSEEEEEETTSCEEEEET
T ss_pred ----CCCEEEEEeCCCcEEEEEC
Confidence 2357777777777777753
No 16
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.64 E-value=0.002 Score=71.97 Aligned_cols=162 Identities=14% Similarity=0.142 Sum_probs=107.6
Q ss_pred CCceeEEEEeCC-EEEEEecCCeEEEEeC-CCCCceeeEc---CCCCCCccceeEEEeCCCCCeEEEEeecCCC---ccE
Q 001978 21 RGVITCMSAGND-VIVLGTSKGWLIRHDF-GAGDSYDIDL---SAGRPGEQSIHKVFVDPGGSHCIATIVGSGG---AET 92 (987)
Q Consensus 21 ~~~i~~~~v~nn-~l~~~~~~g~l~ridl-~~~~~~~~~l---~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~---g~~ 92 (987)
...|++++.+.+ .++.|..+|.|..+|+ ....+..+.. +.. ....|..+-++|.|.++++++. + |..
T Consensus 186 ~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~--~~~~i~~i~~~~~~~~l~~~~~---d~~~g~i 260 (397)
T 1sq9_A 186 SQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMIN--NSNSIRSVKFSPQGSLLAIAHD---SNSFGCI 260 (397)
T ss_dssp CCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---C--CCCCEEEEEECSSTTEEEEEEE---ETTEEEE
T ss_pred CCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccc--cCCccceEEECCCCCEEEEEec---CCCCceE
Confidence 456899999866 8888889999999999 5544555554 210 1367999999999999998888 7 888
Q ss_pred EEEecCCCCc-eeccCC------------CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeee
Q 001978 93 FYTHAKWSKP-RVLSKL------------KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF 159 (987)
Q Consensus 93 ~Y~~~~~~k~-k~L~kl------------kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~ 159 (987)
+.+.....+. +.+... ....|.+++|++. ..-++.|+.+|.|....+... +.+.. +
T Consensus 261 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~----~~~~~-~ 329 (397)
T 1sq9_A 261 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS------GETLCSAGWDGKLRFWDVKTK----ERITT-L 329 (397)
T ss_dssp EEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSS------SSEEEEEETTSEEEEEETTTT----EEEEE-E
T ss_pred EEEECCCCcccceeccCcccccccccccccCCcEEEEEECCC------CCEEEEEeCCCeEEEEEcCCC----ceeEE-E
Confidence 7777655442 223210 3458999999942 236888999999998877543 11222 2
Q ss_pred eeC----CC---------------CCceeeEEEEeec-----cCCCceEEEEEECCCeEEEEe
Q 001978 160 ELN----EL---------------PEAFMGLQMETAS-----LSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 160 ~l~----~~---------------~~~I~gi~~~~~~-----~~~~~~~~i~ast~~rly~f~ 198 (987)
..+ .. .++|+++.|..-. ++.+.++++.++.+..+.-|.
T Consensus 330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 330 NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp ECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred ecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 210 11 3679999997310 000115777777787777664
No 17
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.63 E-value=0.0014 Score=72.43 Aligned_cols=156 Identities=10% Similarity=0.106 Sum_probs=107.1
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCC--CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 001978 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAG--DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 21 ~~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~--~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (987)
.+.|+|++.+.+ .++.|..+|.|..+|+ ... .+..+.-+ ...|..+-++|.|..+++++. +|....+
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~~~~~---dg~i~vw 79 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH-----NGQVTGVDWAPDSNRIVTCGT---DRNAYVW 79 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC-----SSCEEEEEEETTTTEEEEEET---TSCEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC-----CCcccEEEEeCCCCEEEEEcC---CCeEEEE
Confidence 356999999755 8899989999999999 443 34444433 468999999999999998887 8888877
Q ss_pred ecCCCCceeccCC--CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEE
Q 001978 96 HAKWSKPRVLSKL--KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (987)
Q Consensus 96 ~~~~~k~k~L~kl--kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~ 173 (987)
+....+......+ .+..|.+++|++. ...++.|+.+|.|....+..... ....+.+ ..+ ...+|+++.|
T Consensus 80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~v~i~d~~~~~~-~~~~~~~-~~~-~~~~i~~~~~ 150 (372)
T 1k8k_C 80 TLKGRTWKPTLVILRINRAARCVRWAPN------EKKFAVGSGSRVISICYFEQEND-WWVCKHI-KKP-IRSTVLSLDW 150 (372)
T ss_dssp EEETTEEEEEEECCCCSSCEEEEEECTT------SSEEEEEETTSSEEEEEEETTTT-EEEEEEE-CTT-CCSCEEEEEE
T ss_pred ECCCCeeeeeEEeecCCCceeEEEECCC------CCEEEEEeCCCEEEEEEecCCCc-ceeeeee-ecc-cCCCeeEEEE
Confidence 7655432222111 3458999999943 23788999999998888765421 1111221 111 1367999998
Q ss_pred EeeccCCCceEEEEEECCCeEEEEe
Q 001978 174 ETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.. +.++++.++....++-|.
T Consensus 151 ~~-----~~~~l~~~~~dg~i~~~d 170 (372)
T 1k8k_C 151 HP-----NSVLLAAGSCDFKCRIFS 170 (372)
T ss_dssp CT-----TSSEEEEEETTSCEEEEE
T ss_pred cC-----CCCEEEEEcCCCCEEEEE
Confidence 63 335777777777787775
No 18
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.0034 Score=69.22 Aligned_cols=166 Identities=11% Similarity=0.088 Sum_probs=108.5
Q ss_pred CCceeEEEEe----CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCC--CCeEEEEeecCCCccEE
Q 001978 21 RGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPG--GSHCIATIVGSGGAETF 93 (987)
Q Consensus 21 ~~~i~~~~v~----nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~--G~hlli~~~~~~~g~~~ 93 (987)
.+.|++++.+ ++.++.|..+|.|..||+ .+.......+. .....|..+-++|. |..+++++. +|...
T Consensus 55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~---d~~i~ 128 (379)
T 3jrp_A 55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA---VHSASVNSVQWAPHEYGPLLLVASS---DGKVS 128 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEEC---CCSSCEEEEEECCGGGCSEEEEEET---TSEEE
T ss_pred CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeec---CCCcceEEEEeCCCCCCCEEEEecC---CCcEE
Confidence 4579999997 689999999999999999 43311111121 11468999999999 998888887 88887
Q ss_pred EEecCCCC---ceeccCCCCceEEEEeecCCCCC-------CCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCC
Q 001978 94 YTHAKWSK---PRVLSKLKGLVVNAVAWNRQQIT-------EASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE 163 (987)
Q Consensus 94 Y~~~~~~k---~k~L~klkg~~i~sVaw~~~~~~-------~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~ 163 (987)
.+.....+ ...+. -....|.+++|++.... ..+...++.|+.+|.|+...+.... .....+..+..
T Consensus 129 v~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~ 204 (379)
T 3jrp_A 129 VVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA---QTYVLESTLEG 204 (379)
T ss_dssp EEECCTTSCCCEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT---TEEEEEEEECC
T ss_pred EEecCCCCceeeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC---cceeeEEEEec
Confidence 77765442 22222 23458999999953100 0023468899999999998886542 12223334443
Q ss_pred CCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 164 LPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 164 ~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
-.++|+++.|..- ....++++.++....++-|.
T Consensus 205 h~~~v~~~~~sp~--~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 205 HSDWVRDVAWSPT--VLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp CSSCEEEEEECCC--CSSSEEEEEEETTSCEEEEE
T ss_pred ccCcEeEEEECCC--CCCCCeEEEEeCCCEEEEEe
Confidence 3467999999631 00036777777777777675
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.59 E-value=0.0032 Score=69.09 Aligned_cols=149 Identities=9% Similarity=0.093 Sum_probs=104.5
Q ss_pred CceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 22 GVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 22 ~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
..|++++.+. +.++.|..+|.|..+|+ .+..+..+.-+ ...|..+-.+|.|..++.++. +|....+...
T Consensus 165 ~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~l~~spd~~~l~s~s~---dg~i~iwd~~ 236 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH-----AMPIRSLTFSPDSQLLVTASD---DGYIKIYDVQ 236 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCCCEEEECTTSCEEEEECT---TSCEEEEETT
T ss_pred ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc-----CCceeEEEEcCCCCEEEEEcC---CCeEEEEECC
Confidence 4588888875 48899999999999999 54434444332 357899999999998888877 8888877765
Q ss_pred CCCceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEee
Q 001978 99 WSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (987)
Q Consensus 99 ~~k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~ 176 (987)
..+. +..+.| ..|.+|+|+++ ...++.|+.+|.|....+..+ +.+..+.+-.++|.++.|..
T Consensus 237 ~~~~--~~~~~~h~~~v~~~~~sp~------~~~l~s~s~D~~v~iwd~~~~-------~~~~~~~~h~~~v~~v~~s~- 300 (321)
T 3ow8_A 237 HANL--AGTLSGHASWVLNVAFCPD------DTHFVSSSSDKSVKVWDVGTR-------TCVHTFFDHQDQVWGVKYNG- 300 (321)
T ss_dssp TCCE--EEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECT-
T ss_pred Ccce--eEEEcCCCCceEEEEECCC------CCEEEEEeCCCcEEEEeCCCC-------EEEEEEcCCCCcEEEEEECC-
Confidence 5432 222333 46999999943 236888999999988777543 22333333236799999862
Q ss_pred ccCCCceEEEEEECCCeEEEEe
Q 001978 177 SLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~ 198 (987)
+.+.++-++....+.-|.
T Consensus 301 ----~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 301 ----NGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp ----TSSEEEEEETTCCEEEEE
T ss_pred ----CCCEEEEEeCCCeEEEEe
Confidence 335677777777777775
No 20
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.56 E-value=0.0051 Score=66.42 Aligned_cols=169 Identities=15% Similarity=0.144 Sum_probs=112.1
Q ss_pred CCCceeEEEEe----CCEEEEEecCCeEEEEeC-CCCCceeeEcCCC--------CCCccceeEEEeCCC---CCeEEEE
Q 001978 20 GRGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAG--------RPGEQSIHKVFVDPG---GSHCIAT 83 (987)
Q Consensus 20 ~~~~i~~~~v~----nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~--------~~~~~~i~~i~lDp~---G~hlli~ 83 (987)
..+.|++++.+ ++.++.|..+|.|..+|+ .+..+..+.++.. ......+..+-..|. |..++++
T Consensus 109 ~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 188 (351)
T 3f3f_A 109 SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS 188 (351)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE
T ss_pred cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe
Confidence 34679999998 558999999999999999 6655544332100 112357888888887 8888888
Q ss_pred eecCCCccEEEEecCCCCceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCcc-----------
Q 001978 84 IVGSGGAETFYTHAKWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDK----------- 150 (987)
Q Consensus 84 ~~~~~~g~~~Y~~~~~~k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~----------- 150 (987)
+. +|...|......+.+.+..+.+ ..|++++|++.. +. ...-++.|+.+|.|....+.....
T Consensus 189 ~~---~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~-~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 263 (351)
T 3f3f_A 189 AL---EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSI-GR-WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNS 263 (351)
T ss_dssp ET---TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCS-SC-SSEEEEEEETTSCEEEEEEEECC------------
T ss_pred cC---CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCC-CC-cceEEEEEcCCCeEEEEeCCCCcCccccCCcccce
Confidence 77 7888777776666555555544 489999999532 10 013688899999999887764310
Q ss_pred ----------------------------ccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 151 ----------------------------REKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 151 ----------------------------~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.....+.+..+..-.++|+++.|.. +.++++.++....+.-|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-----~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 264 NMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-----TGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp ---------------------------CCSEEEEEEEEECTTSSCEEEEEECS-----SSCCEEEEETTSCEEEEE
T ss_pred eccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-----CCCEEEEecCCCcEEEEe
Confidence 0011234444443346799999862 235777777777777674
No 21
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.55 E-value=0.0029 Score=69.43 Aligned_cols=151 Identities=11% Similarity=0.108 Sum_probs=105.4
Q ss_pred CceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 22 GVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 22 ~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
..|++++++.+ .++-|..+|+|..||+ .+..+..+..+ ...+..+-..|.|.+++.++. +|....+...
T Consensus 81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~g~~---dg~v~i~~~~ 152 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG-----PVDAWTLAFSPDSQYLATGTH---VGKVNIFGVE 152 (321)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-----TTCCCCEEECTTSSEEEEECT---TSEEEEEETT
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCC-----CccEEEEEECCCCCEEEEEcC---CCcEEEEEcC
Confidence 46889988765 6777778999999999 55555555443 246777888999999998887 8888777765
Q ss_pred CCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeecc
Q 001978 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (987)
..+....-...+..|.+++|+++ ...++.|+.+|.|....+..+ +.+..+..-..+|+++.|..
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~spd------g~~lasg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~sp--- 216 (321)
T 3ow8_A 153 SGKKEYSLDTRGKFILSIAYSPD------GKYLASGAIDGIINIFDIATG-------KLLHTLEGHAMPIRSLTFSP--- 216 (321)
T ss_dssp TCSEEEEEECSSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCCCEEEECT---
T ss_pred CCceeEEecCCCceEEEEEECCC------CCEEEEEcCCCeEEEEECCCC-------cEEEEEcccCCceeEEEEcC---
Confidence 54432222235668999999943 236888999999988776543 22334443346799999862
Q ss_pred CCCceEEEEEECCCeEEEEe
Q 001978 179 SNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~ 198 (987)
+.++++.++....+.-|.
T Consensus 217 --d~~~l~s~s~dg~i~iwd 234 (321)
T 3ow8_A 217 --DSQLLVTASDDGYIKIYD 234 (321)
T ss_dssp --TSCEEEEECTTSCEEEEE
T ss_pred --CCCEEEEEcCCCeEEEEE
Confidence 335677666677777664
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.55 E-value=0.0029 Score=69.75 Aligned_cols=150 Identities=12% Similarity=0.037 Sum_probs=104.0
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.|++++.+.+ .++.|..+|+|..||+ .+..+..+.-+ ...|..+-++|.|.+++.++. +|....+..
T Consensus 184 ~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h-----~~~v~~v~~~p~~~~l~s~s~---d~~v~iwd~ 255 (340)
T 1got_B 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH-----ESDINAICFFPNGNAFATGSD---DATCRLFDL 255 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TSCEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-----cCCEEEEEEcCCCCEEEEEcC---CCcEEEEEC
Confidence 356899999754 7888999999999999 54434444333 367999999999999998887 899888876
Q ss_pred CCCCce-eccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 98 KWSKPR-VLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 98 ~~~k~k-~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
...+.. .+. ..+ ..|++|+|++. ..-++.|+.+|.|....+... +.+..+.+-.++|+++.|.
T Consensus 256 ~~~~~~~~~~-~~~~~~~v~~~~~s~~------g~~l~~g~~d~~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~s 321 (340)
T 1got_B 256 RADQELMTYS-HDNIICGITSVSFSKS------GRLLLAGYDDFNCNVWDALKA-------DRAGVLAGHDNRVSCLGVT 321 (340)
T ss_dssp TTTEEEEEEC-CTTCCSCEEEEEECTT------SSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEEC
T ss_pred CCCcEEEEEc-cCCcccceEEEEECCC------CCEEEEECCCCeEEEEEcccC-------cEeeEeecCCCcEEEEEEc
Confidence 554322 221 122 36999999943 236888999999888766443 1222333223679999985
Q ss_pred eeccCCCceEEEEEECCCeEEEE
Q 001978 175 TASLSNGTRYYVMAVTPTRLYSF 197 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f 197 (987)
. +.++++-++.+..++-|
T Consensus 322 ~-----dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 322 D-----DGMAVATGSWDSFLKIW 339 (340)
T ss_dssp T-----TSSCEEEEETTSCEEEE
T ss_pred C-----CCCEEEEEcCCccEEec
Confidence 2 33567777777777766
No 23
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.54 E-value=0.003 Score=71.30 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=104.9
Q ss_pred CCCceeEEEEeCCEEEEEecCCeEEEEeC-CCCC-ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 20 GRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 20 ~~~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
..+.|++++..++.++.|..+|.|..+|+ .... +..+.-+ ...|..+-.+|.|.++++++. +|....+..
T Consensus 175 ~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~---d~~v~iwd~ 246 (401)
T 4aez_A 175 HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH-----SSEVCGLAWRSDGLQLASGGN---DNVVQIWDA 246 (401)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECC-----SSCEEEEEECTTSSEEEEEET---TSCEEEEET
T ss_pred CCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCC-----CCCeeEEEEcCCCCEEEEEeC---CCeEEEccC
Confidence 34579999999999999999999999999 3443 2333322 468999999999999999888 899988887
Q ss_pred CCCCceeccCCCCceEEEEeecCCCCCCCCcceEEE---EcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIIL---GTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 98 ~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLi---Gt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
...+....-.-....|++++|++.. ..+++ |+.+|.|....+..+ +..+. +.. +++|+++.|.
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~p~~------~~ll~~~~gs~d~~i~i~d~~~~----~~~~~-~~~---~~~v~~~~~s 312 (401)
T 4aez_A 247 RSSIPKFTKTNHNAAVKAVAWCPWQ------SNLLATGGGTMDKQIHFWNAATG----ARVNT-VDA---GSQVTSLIWS 312 (401)
T ss_dssp TCSSEEEEECCCSSCCCEEEECTTS------TTEEEEECCTTTCEEEEEETTTC----CEEEE-EEC---SSCEEEEEEC
T ss_pred CCCCccEEecCCcceEEEEEECCCC------CCEEEEecCCCCCEEEEEECCCC----CEEEE-EeC---CCcEEEEEEC
Confidence 6554332111234689999999532 13554 457999998877643 11222 222 2579999986
Q ss_pred eeccCCCceEEEEEE--CCCeEEEEe
Q 001978 175 TASLSNGTRYYVMAV--TPTRLYSFT 198 (987)
Q Consensus 175 ~~~~~~~~~~~i~as--t~~rly~f~ 198 (987)
. +.+.++.++ ....++-|.
T Consensus 313 ~-----~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 313 P-----HSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp S-----SSSEEEEEECTTTCEEEEEE
T ss_pred C-----CCCeEEEEeecCCCcEEEEe
Confidence 3 335666655 466677664
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.0012 Score=74.17 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=104.2
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
.+.|++++.+. +.|+.|..+|.|..+|.....+..+.-+ ...|..+-.+|.|.++++++. +|..+.++..
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~ 179 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFH-----RAPIVSVKWNKDGTHIISMDV---ENVTILWNVI 179 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCC-----CSCEEEEEECTTSSEEEEEET---TCCEEEEETT
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCC-----CccEEEEEECCCCCEEEEEec---CCeEEEEECC
Confidence 34799999984 5899999999999999643334433322 468999999999999998887 8888887765
Q ss_pred CCCceeccCCCCce---------------EEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCC
Q 001978 99 WSKPRVLSKLKGLV---------------VNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE 163 (987)
Q Consensus 99 ~~k~k~L~klkg~~---------------i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~ 163 (987)
..+....-+..... |.+++|.+. +.+++|+.+|.|+...+.... ... .+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~i~~~d~~~~~----~~~---~~~~ 245 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-------DKFVIPGPKGAIFVYQITEKT----PTG---KLIG 245 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEET-------TEEEEECGGGCEEEEETTCSS----CSE---EECC
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-------CEEEEEcCCCeEEEEEcCCCc----eee---eecc
Confidence 44322211122223 889999832 369999999999998876531 112 2222
Q ss_pred CCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 164 LPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 164 ~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
..++|+++.|.. +.++++.++....++.|.
T Consensus 246 ~~~~i~~~~~~~-----~~~~l~~~~~d~~i~i~d 275 (425)
T 1r5m_A 246 HHGPISVLEFND-----TNKLLLSASDDGTLRIWH 275 (425)
T ss_dssp CSSCEEEEEEET-----TTTEEEEEETTSCEEEEC
T ss_pred CCCceEEEEECC-----CCCEEEEEcCCCEEEEEE
Confidence 236799999863 235777777788888775
No 25
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.52 E-value=0.07 Score=60.75 Aligned_cols=145 Identities=11% Similarity=0.077 Sum_probs=100.4
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 21 ~~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
.+.|++++.+++.++.|..+|+|..+|+ .+..+..+.-+ ...|..+..+ |..+++++. +|....++...
T Consensus 159 ~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~~~~~--~~~l~s~s~---dg~i~~wd~~~ 228 (445)
T 2ovr_B 159 TGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGH-----TSTVRCMHLH--EKRVVSGSR---DATLRVWDIET 228 (445)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEEE--TTEEEEEET---TSEEEEEESSS
T ss_pred CCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCC-----CCcEEEEEec--CCEEEEEeC---CCEEEEEECCC
Confidence 4568999999999999999999999999 44434444333 3567777775 566777777 88888887665
Q ss_pred CCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeecc
Q 001978 100 SKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (987)
Q Consensus 100 ~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (987)
.+. +.+. .....|.+++|+. ..++.|+.+|.|....+... +.+..+....++|+++.+.
T Consensus 229 ~~~~~~~~-~~~~~v~~~~~~~--------~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~---- 288 (445)
T 2ovr_B 229 GQCLHVLM-GHVAAVRCVQYDG--------RRVVSGAYDFMVKVWDPETE-------TCLHTLQGHTNRVYSLQFD---- 288 (445)
T ss_dssp CCEEEEEE-CCSSCEEEEEECS--------SCEEEEETTSCEEEEEGGGT-------EEEEEECCCSSCEEEEEEC----
T ss_pred CcEEEEEc-CCcccEEEEEECC--------CEEEEEcCCCEEEEEECCCC-------cEeEEecCCCCceEEEEEC----
Confidence 543 2232 2345899999951 26999999999988776543 2233343334679999883
Q ss_pred CCCceEEEEEECCCeEEEEe
Q 001978 179 SNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~ 198 (987)
+ +.++.++....++-|.
T Consensus 289 -~--~~l~~~~~d~~i~i~d 305 (445)
T 2ovr_B 289 -G--IHVVSGSLDTSIRVWD 305 (445)
T ss_dssp -S--SEEEEEETTSCEEEEE
T ss_pred -C--CEEEEEeCCCeEEEEE
Confidence 2 5677777777788775
No 26
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.0031 Score=69.22 Aligned_cols=152 Identities=14% Similarity=0.219 Sum_probs=104.1
Q ss_pred CCceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC-----ccE
Q 001978 21 RGVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG-----AET 92 (987)
Q Consensus 21 ~~~i~~~~v~--nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~-----g~~ 92 (987)
.+.|++++.+ ++.++.|..+|.|..+|+ ....+..+.. ...|..+-++|.|.++++++. + |..
T Consensus 74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~---~~~~~~g~i 144 (369)
T 3zwl_B 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKS------PVPVKRVEFSPCGNYFLAILD---NVMKNPGSI 144 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC------SSCEEEEEECTTSSEEEEEEC---CBTTBCCEE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec------CCCeEEEEEccCCCEEEEecC---CccCCCCEE
Confidence 4579999998 568999999999999999 5555555552 357999999999999999887 5 777
Q ss_pred EEEecCCCC------------ceeccCCC-CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeee
Q 001978 93 FYTHAKWSK------------PRVLSKLK-GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF 159 (987)
Q Consensus 93 ~Y~~~~~~k------------~k~L~klk-g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~ 159 (987)
+.+.....+ ...+.... ...|.+++|++. ...+++|+.+|.|+...+... .+..+. +
T Consensus 145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~---~~~~~~-~ 214 (369)
T 3zwl_B 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK------GKYIIAGHKDGKISKYDVSNN---YEYVDS-I 214 (369)
T ss_dssp EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG------GCEEEEEETTSEEEEEETTTT---TEEEEE-E
T ss_pred EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC------CCEEEEEcCCCEEEEEECCCC---cEeEEE-E
Confidence 665533221 11111111 128999999842 336888999999998877542 111222 2
Q ss_pred eeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 160 ELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 160 ~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
... .++|+++.|.. +.++++.++....++.|.
T Consensus 215 ~~~--~~~v~~~~~~~-----~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 215 DLH--EKSISDMQFSP-----DLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp ECC--SSCEEEEEECT-----TSSEEEEEETTSEEEEEE
T ss_pred ecC--CCceeEEEECC-----CCCEEEEecCCceEEEEE
Confidence 333 36799999862 336777777788888775
No 27
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.059 Score=57.34 Aligned_cols=149 Identities=7% Similarity=-0.049 Sum_probs=102.0
Q ss_pred CCceeEEEEe-CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 21 RGVITCMSAG-NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 21 ~~~i~~~~v~-nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
.+.|+|++.. ++.++.|..+|.|..+|+ .......+..+ ...|..+-.+|.|.++++++. +|....+...
T Consensus 18 ~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~---dg~i~~~~~~ 89 (313)
T 3odt_A 18 DQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTG-----QGFLNSVCYDSEKELLLFGGK---DTMINGVPLF 89 (313)
T ss_dssp SSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEEC-----SSCEEEEEEETTTTEEEEEET---TSCEEEEETT
T ss_pred CCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecC-----CccEEEEEECCCCCEEEEecC---CCeEEEEEee
Confidence 4578998874 558899999999999999 43333444433 468999999999999999888 8888766643
Q ss_pred CCC-ceeccCC--CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 99 WSK-PRVLSKL--KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 99 ~~k-~k~L~kl--kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
... .+.+..+ ....|.+++|+. ..++.|+.+|.|.... .. + ....+... ..+|.++.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~--------~~l~~~~~d~~i~~~d--~~----~-~~~~~~~~--~~~v~~~~~~~ 152 (313)
T 3odt_A 90 ATSGEDPLYTLIGHQGNVCSLSFQD--------GVVISGSWDKTAKVWK--EG----S-LVYNLQAH--NASVWDAKVVS 152 (313)
T ss_dssp CCTTSCC-CEECCCSSCEEEEEEET--------TEEEEEETTSEEEEEE--TT----E-EEEEEECC--SSCEEEEEEEE
T ss_pred ecCCCCcccchhhcccCEEEEEecC--------CEEEEEeCCCCEEEEc--CC----c-EEEecccC--CCceeEEEEcc
Confidence 321 1222222 345899999962 2689999999988875 21 1 12222333 36799999864
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 001978 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (987)
. +.+.++.++....++.|.
T Consensus 153 ~----~~~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 153 F----SENKFLTASADKTIKLWQ 171 (313)
T ss_dssp T----TTTEEEEEETTSCEEEEE
T ss_pred C----CCCEEEEEECCCCEEEEe
Confidence 2 235777777788888776
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.0028 Score=71.08 Aligned_cols=157 Identities=13% Similarity=0.060 Sum_probs=105.4
Q ss_pred CCceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~--nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.|++++.+ ++.++.|..+|.|..+|+ ....+..+.-+ ...|..+-.+|.| .+++++. +|..+.++.
T Consensus 247 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~-~l~~~~~---d~~i~i~d~ 317 (425)
T 1r5m_A 247 HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH-----SQSIVSASWVGDD-KVISCSM---DGSVRLWSL 317 (425)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC-----SSCEEEEEEETTT-EEEEEET---TSEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC-----CccEEEEEECCCC-EEEEEeC---CCcEEEEEC
Confidence 4568999997 457999999999999999 55545444333 3679999999999 7777766 788887776
Q ss_pred CCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCcccc-------------ceeeeeeeeCCC
Q 001978 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKRE-------------KYIKLLFELNEL 164 (987)
Q Consensus 98 ~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e-------------~~~k~v~~l~~~ 164 (987)
...+.....+..+..|.+++|++. ..-+++|+.+|.|....+....... ...+.+..+...
T Consensus 318 ~~~~~~~~~~~~~~~i~~~~~s~~------~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (425)
T 1r5m_A 318 KQNTLLALSIVDGVPIFAGRISQD------GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS 391 (425)
T ss_dssp TTTEEEEEEECTTCCEEEEEECTT------SSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCT
T ss_pred CCCcEeEecccCCccEEEEEEcCC------CCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCc
Confidence 554433322234568999999943 2368889999999998886431000 001133344432
Q ss_pred CC--ceeeEEEEeeccCCCceEEEEEECCCeEEEE
Q 001978 165 PE--AFMGLQMETASLSNGTRYYVMAVTPTRLYSF 197 (987)
Q Consensus 165 ~~--~I~gi~~~~~~~~~~~~~~i~ast~~rly~f 197 (987)
.. +|+++.|.. +.++++.++....++-|
T Consensus 392 ~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~iw 421 (425)
T 1r5m_A 392 QDNDYIFDLSWNC-----AGNKISVAYSLQEGSVV 421 (425)
T ss_dssp TCCCCEEEEEECT-----TSSEEEEEESSSCCEEE
T ss_pred ccCCceEEEEccC-----CCceEEEEecCceEEEE
Confidence 22 799999862 33577777777766655
No 29
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.51 E-value=0.0071 Score=65.34 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=106.4
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
...|++++.+. +.++.|..+|.|..+|+ .+..+..+.-+ ...|..+-.+|.|..++.++. +|....++.
T Consensus 65 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~---d~~i~iwd~ 136 (312)
T 4ery_A 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-----SNYVFCCNFNPQSNLIVSGSF---DESVRIWDV 136 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC-----SSCEEEEEECSSSSEEEEEET---TSCEEEEET
T ss_pred CCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCC-----CCCEEEEEEcCCCCEEEEEeC---CCcEEEEEC
Confidence 45689999874 58899999999999999 54444444443 367899999999999988887 899888887
Q ss_pred CCCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEee
Q 001978 98 KWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (987)
Q Consensus 98 ~~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~ 176 (987)
...+. +.+. .....|.+++|++. ...++.|+.+|.|....+..+ +.++.+..-. ..+|..+.|.
T Consensus 137 ~~~~~~~~~~-~~~~~v~~~~~~~~------~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~--~~~~~~~~~~-- 201 (312)
T 4ery_A 137 KTGKCLKTLP-AHSDPVSAVHFNRD------GSLIVSSSYDGLCRIWDTASG----QCLKTLIDDD--NPPVSFVKFS-- 201 (312)
T ss_dssp TTCCEEEEEC-CCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTC----CEEEEECCSS--CCCEEEEEEC--
T ss_pred CCCEEEEEec-CCCCcEEEEEEcCC------CCEEEEEeCCCcEEEEECCCC----ceeeEEeccC--CCceEEEEEC--
Confidence 65442 3333 23458999999842 236888999999988776543 1223322112 2468888875
Q ss_pred ccCCCceEEEEEECCCeEEEEe
Q 001978 177 SLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~ 198 (987)
.+.++++.++....++-|.
T Consensus 202 ---~~~~~l~~~~~d~~i~iwd 220 (312)
T 4ery_A 202 ---PNGKYILAATLDNTLKLWD 220 (312)
T ss_dssp ---TTSSEEEEEETTTEEEEEE
T ss_pred ---CCCCEEEEEcCCCeEEEEE
Confidence 2336777777777777664
No 30
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.50 E-value=0.0057 Score=67.41 Aligned_cols=163 Identities=10% Similarity=0.004 Sum_probs=108.4
Q ss_pred CCCceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 20 GRGVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 20 ~~~~i~~~~v~--nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
..+.|++++.+ ++.++.|..+|.|..+|+ .......+.+.. ....|..+-.+|.|..+++++. +|..+.+.
T Consensus 51 h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~---d~~v~i~d 124 (372)
T 1k8k_C 51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR---INRAARCVRWAPNEKKFAVGSG---SRVISICY 124 (372)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCC---CSSCEEEEEECTTSSEEEEEET---TSSEEEEE
T ss_pred CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeec---CCCceeEEEECCCCCEEEEEeC---CCEEEEEE
Confidence 44679999998 668999999999999999 433222333321 1467999999999999999887 78887666
Q ss_pred cCCCC----ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccc-----------cceeeeeeee
Q 001978 97 AKWSK----PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKR-----------EKYIKLLFEL 161 (987)
Q Consensus 97 ~~~~k----~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~-----------e~~~k~v~~l 161 (987)
....+ .+.+..-....|.+++|++. ...++.|+.+|.|....+...... ...-+.+..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
T 1k8k_C 125 FEQENDWWVCKHIKKPIRSTVLSLDWHPN------SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 198 (372)
T ss_dssp EETTTTEEEEEEECTTCCSCEEEEEECTT------SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred ecCCCcceeeeeeecccCCCeeEEEEcCC------CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence 54443 22332223458999999942 236889999999988876421000 0011223334
Q ss_pred CCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 162 NELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 162 ~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
....++|+++.|.. +.++++.++....++-|.-
T Consensus 199 ~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 199 SSSCGWVHGVCFSA-----NGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp CCCSSCEEEEEECS-----SSSEEEEEETTTEEEEEEG
T ss_pred CCCCCeEEEEEECC-----CCCEEEEEeCCCEEEEEEC
Confidence 33346799999863 2357777777888887753
No 31
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.49 E-value=0.0065 Score=67.71 Aligned_cols=160 Identities=8% Similarity=0.000 Sum_probs=110.6
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~n---n~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.|++++.+. +.++.|..+|.|..+|+....+..+.-+. .....|..+-+.|.|..+++++. +|..+.+..
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~ 192 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTD--SWDYWYCCVDVSVSRQMLATGDS---TGRLLLLGL 192 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCC--CSSCCEEEEEEETTTTEEEEEET---TSEEEEEET
T ss_pred CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccC--CCCCCeEEEEECCCCCEEEEECC---CCCEEEEEC
Confidence 46799999976 68899999999999999534444443332 12367999999999999998887 899888887
Q ss_pred CCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 98 ~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
.......+.. ....|.+|+|++.. ..-++.|+.+|.|....+...+...+..+. +. . .++|+++.|..
T Consensus 193 ~~~~~~~~~~-h~~~v~~~~~~~~~-----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~-~--~~~v~~~~~s~-- 260 (383)
T 3ei3_B 193 DGHEIFKEKL-HKAKVTHAEFNPRC-----DWLMATSSVDATVKLWDLRNIKDKNSYIAE-MP-H--EKPVNAAYFNP-- 260 (383)
T ss_dssp TSCEEEEEEC-SSSCEEEEEECSSC-----TTEEEEEETTSEEEEEEGGGCCSTTCEEEE-EE-C--SSCEEEEEECT--
T ss_pred CCCEEEEecc-CCCcEEEEEECCCC-----CCEEEEEeCCCEEEEEeCCCCCcccceEEE-ec-C--CCceEEEEEcC--
Confidence 5444444432 34589999999431 125888999999998887653211122222 22 2 36799999962
Q ss_pred cCCCceEEEEEECCCeEEEEec
Q 001978 178 LSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~g 199 (987)
.+.++++.++....++-|.-
T Consensus 261 --~~~~~l~~~~~d~~i~iwd~ 280 (383)
T 3ei3_B 261 --TDSTKLLTTDQRNEIRVYSS 280 (383)
T ss_dssp --TTSCEEEEEESSSEEEEEET
T ss_pred --CCCCEEEEEcCCCcEEEEEC
Confidence 03367777777888887753
No 32
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.47 E-value=0.0026 Score=78.73 Aligned_cols=154 Identities=6% Similarity=0.013 Sum_probs=109.9
Q ss_pred CCCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 20 GRGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 20 ~~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
-++.|+|++.+. +.++.|..+|.|..||+ .+..+..+..+ ...|..+-.+|.|..+++++. +|....++
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~---dg~i~vw~ 83 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVT-----ETPVRAGKFIARKNWIIVGSD---DFRIRVFN 83 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-----SSCEEEEEEEGGGTEEEEEET---TSEEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecC-----CCcEEEEEEeCCCCEEEEEeC---CCeEEEEE
Confidence 346799999985 58899999999999999 55555555544 468999999999999999887 89888887
Q ss_pred cCCCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 97 AKWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 97 ~~~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
....+. ..+.. ..-.|++++|++. ...++.|+.+|.|....+..+ ......+.-. +++|+++.|..
T Consensus 84 ~~~~~~~~~~~~-~~~~v~~~~~s~~------~~~l~~~~~dg~i~vw~~~~~----~~~~~~~~~~--~~~v~~~~~~p 150 (814)
T 3mkq_A 84 YNTGEKVVDFEA-HPDYIRSIAVHPT------KPYVLSGSDDLTVKLWNWENN----WALEQTFEGH--EHFVMCVAFNP 150 (814)
T ss_dssp TTTCCEEEEEEC-CSSCEEEEEECSS------SSEEEEEETTSEEEEEEGGGT----SEEEEEEECC--SSCEEEEEEET
T ss_pred CCCCcEEEEEec-CCCCEEEEEEeCC------CCEEEEEcCCCEEEEEECCCC----ceEEEEEcCC--CCcEEEEEEEc
Confidence 655432 33332 3457999999943 226888999999998887653 1122223323 36799999962
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 001978 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.+.+.++.++....+..|.
T Consensus 151 ----~~~~~l~~~~~dg~v~vwd 169 (814)
T 3mkq_A 151 ----KDPSTFASGCLDRTVKVWS 169 (814)
T ss_dssp ----TEEEEEEEEETTSEEEEEE
T ss_pred ----CCCCEEEEEeCCCeEEEEE
Confidence 1235677766677777775
No 33
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0042 Score=68.14 Aligned_cols=158 Identities=11% Similarity=0.032 Sum_probs=108.8
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.|+|++.+. +.++.|..+|.|..||+ ....+..+.-+ ...|..+-++|.|.++++++. +|..+.++.
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~ 103 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH-----TGTIWSIDVDCFTKYCVTGSA---DYSIKLWDV 103 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TTEEEEEET
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhc-----CCcEEEEEEcCCCCEEEEEeC---CCeEEEEEC
Confidence 45699999975 58899999999999999 55444444333 468999999999999998887 899988887
Q ss_pred CCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCC-----CcEEEEEeccCcccc-------ceeeeeeeeCCCC
Q 001978 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT-----GQLHEMAVDEKDKRE-------KYIKLLFELNELP 165 (987)
Q Consensus 98 ~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~-----G~i~e~~i~~~~~~e-------~~~k~v~~l~~~~ 165 (987)
...+.....+ .+..|.+++|++. ...++.|+.+ |.|....+....... .....+ ......
T Consensus 104 ~~~~~~~~~~-~~~~v~~~~~~~~------~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 175 (369)
T 3zwl_B 104 SNGQCVATWK-SPVPVKRVEFSPC------GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGL 175 (369)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECTT------SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTC
T ss_pred CCCcEEEEee-cCCCeEEEEEccC------CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCc
Confidence 6655433332 4568999999943 2368888888 999988886542110 111111 111111
Q ss_pred CceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 166 EAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 166 ~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
.+|+.+.|.. +.++++.++....++.|.-
T Consensus 176 ~~~~~~~~~~-----~~~~l~~~~~dg~i~i~d~ 204 (369)
T 3zwl_B 176 DAATVAGWST-----KGKYIIAGHKDGKISKYDV 204 (369)
T ss_dssp CCEEEEEECG-----GGCEEEEEETTSEEEEEET
T ss_pred cceeEEEEcC-----CCCEEEEEcCCCEEEEEEC
Confidence 2688888863 3357777777888887754
No 34
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.42 E-value=0.007 Score=68.74 Aligned_cols=159 Identities=10% Similarity=0.054 Sum_probs=108.9
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.|++++.+. +.++.|..+|+|..||+ .+..+..+.-+ ...|..+..+|.|..++.++. +|....+..
T Consensus 192 ~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h-----~~~v~~~~~~~~g~~l~s~s~---D~~v~vwd~ 263 (410)
T 1vyh_C 192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-----REWVRMVRPNQDGTLIASCSN---DQTVRVWVV 263 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-----SSCEEEEEECTTSSEEEEEET---TSCEEEEET
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC-----CccEEEEEECCCCCEEEEEcC---CCeEEEEEC
Confidence 35689999964 58899999999999999 55545555443 357899999999999988887 899888877
Q ss_pred CCCCceeccCCCCceEEEEeecCCCCC-------C-------CCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCC
Q 001978 98 KWSKPRVLSKLKGLVVNAVAWNRQQIT-------E-------ASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE 163 (987)
Q Consensus 98 ~~~k~k~L~klkg~~i~sVaw~~~~~~-------~-------~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~ 163 (987)
...+...--+-....|.+++|.+.... . ....-++.|+.+|.|....+..+ +.+..+.+
T Consensus 264 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-------~~~~~~~~ 336 (410)
T 1vyh_C 264 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-------MCLMTLVG 336 (410)
T ss_dssp TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-------EEEEEEEC
T ss_pred CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-------ceEEEEEC
Confidence 655433321224468999999954210 0 00224777899999888776543 12223332
Q ss_pred CCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 164 LPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 164 ~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
-..+|+++.|.. +.++++.++....++.|.-
T Consensus 337 h~~~v~~v~~~~-----~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 337 HDNWVRGVLFHS-----GGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp CSSCEEEEEECS-----SSSCEEEEETTTEEEEECC
T ss_pred CCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEEC
Confidence 236799998862 2357777777888888853
No 35
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.41 E-value=0.0077 Score=66.35 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=107.2
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.|++++.+.+ .|+-|..+|+|..||+ .+..+..+..+ ...|..+-..|.|.+++.+.. +|....++.
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~~---d~~v~iw~~ 126 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR-----SSWVMTCAYAPSGNYVACGGL---DNICSIYNL 126 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECS-----SSCEEEEEECTTSSEEEEEET---TCEEEEEET
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecC-----CccEEEEEECCCCCEEEEEeC---CCeEEEEEC
Confidence 357999998754 8999999999999999 66656556554 357899999999999888877 888877775
Q ss_pred CCC--CceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEE
Q 001978 98 KWS--KPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (987)
Q Consensus 98 ~~~--k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~ 173 (987)
... ..+....+.| ..|.+++|.++ +.++.|+.+|.|....+..+ +.+..+..-.++|+++.|
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~-------~~l~s~s~d~~i~~wd~~~~-------~~~~~~~~h~~~v~~~~~ 192 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDD-------NQIVTSSGDTTCALWDIETG-------QQTTTFTGHTGDVMSLSL 192 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEET-------TEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEE
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCC-------CcEEEEECCCcEEEEECCCC-------cEEEEEcCCCCceEEEEE
Confidence 443 2233333333 37999999732 36999999999988776543 222233332367999998
Q ss_pred EeeccCCCceEEEEEECCCeEEEEe
Q 001978 174 ETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.. +.++++.++....+.-|.
T Consensus 193 ~~-----~~~~l~sg~~d~~v~~wd 212 (340)
T 1got_B 193 AP-----DTRLFVSGACDASAKLWD 212 (340)
T ss_dssp CT-----TSSEEEEEETTSCEEEEE
T ss_pred CC-----CCCEEEEEeCCCcEEEEE
Confidence 62 335777777777777775
No 36
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.40 E-value=0.0044 Score=69.17 Aligned_cols=154 Identities=12% Similarity=0.094 Sum_probs=107.4
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEE
Q 001978 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 21 ~~~i~~~~v~n---n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~ 95 (987)
.+.|+|++.+. +.++.|..+|.|..+|+ .+.....+... .....|..+-..| .|..+++++. +|....+
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~~~---d~~i~iw 146 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM---GPGDAITGMKFNQFNTNQLFVSSI---RGATTLR 146 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCC---STTCBEEEEEEETTEEEEEEEEET---TTEEEEE
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecC---CcCCceeEEEeCCCCCCEEEEEeC---CCEEEEE
Confidence 46799999987 47999999999999999 55544444331 1246899999999 5677777776 8988888
Q ss_pred ecCCCCceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEE
Q 001978 96 HAKWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (987)
Q Consensus 96 ~~~~~k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~ 173 (987)
.......+.+....+ ..|.+++|++. ...++.|+.+|.|....+... .+.. +... .++|+++.|
T Consensus 147 d~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~i~d~~~~-----~~~~-~~~h--~~~v~~~~~ 212 (383)
T 3ei3_B 147 DFSGSVIQVFAKTDSWDYWYCCVDVSVS------RQMLATGDSTGRLLLLGLDGH-----EIFK-EKLH--KAKVTHAEF 212 (383)
T ss_dssp ETTSCEEEEEECCCCSSCCEEEEEEETT------TTEEEEEETTSEEEEEETTSC-----EEEE-EECS--SSCEEEEEE
T ss_pred ECCCCceEEEeccCCCCCCeEEEEECCC------CCEEEEECCCCCEEEEECCCC-----EEEE-eccC--CCcEEEEEE
Confidence 877655555543333 45999999943 237889999999998887421 1222 2223 367999999
Q ss_pred EeeccCCCceEEEEEECCCeEEEEe
Q 001978 174 ETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.. .....++.++....++-|.
T Consensus 213 ~~----~~~~~l~s~~~d~~i~iwd 233 (383)
T 3ei3_B 213 NP----RCDWLMATSSVDATVKLWD 233 (383)
T ss_dssp CS----SCTTEEEEEETTSEEEEEE
T ss_pred CC----CCCCEEEEEeCCCEEEEEe
Confidence 63 2222677777787888775
No 37
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.0051 Score=65.81 Aligned_cols=149 Identities=11% Similarity=0.106 Sum_probs=102.3
Q ss_pred CCCceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEEecC
Q 001978 20 GRGVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 20 ~~~~i~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
..+.|++++..++.++.|..+|.|..+|. ......+..+ ...|..+-..| .|.++++++. +|....++..
T Consensus 103 ~~~~i~~~~~~~~~l~~~~~d~~i~~~d~-~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~---d~~i~i~d~~ 173 (313)
T 3odt_A 103 HQGNVCSLSFQDGVVISGSWDKTAKVWKE-GSLVYNLQAH-----NASVWDAKVVSFSENKFLTASA---DKTIKLWQND 173 (313)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEET-TEEEEEEECC-----SSCEEEEEEEETTTTEEEEEET---TSCEEEEETT
T ss_pred cccCEEEEEecCCEEEEEeCCCCEEEEcC-CcEEEecccC-----CCceeEEEEccCCCCEEEEEEC---CCCEEEEecC
Confidence 44679999999999999999999999993 2223333333 35677776666 8888888887 8888777632
Q ss_pred CCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeecc
Q 001978 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (987)
...+.+....+..|.+++|.+. +.++.|+.+|.|....+..+ +.+.. +... .++|+++.|..
T Consensus 174 -~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~dg~i~i~d~~~~----~~~~~-~~~~--~~~i~~~~~~~--- 235 (313)
T 3odt_A 174 -KVIKTFSGIHNDVVRHLAVVDD-------GHFISCSNDGLIKLVDMHTG----DVLRT-YEGH--ESFVYCIKLLP--- 235 (313)
T ss_dssp -EEEEEECSSCSSCEEEEEEEET-------TEEEEEETTSEEEEEETTTC----CEEEE-EECC--SSCEEEEEECT---
T ss_pred -ceEEEEeccCcccEEEEEEcCC-------CeEEEccCCCeEEEEECCch----hhhhh-hhcC--CceEEEEEEec---
Confidence 2233344335568999999832 24999999999998877543 11222 2323 36799999862
Q ss_pred CCCceEEEEEECCCeEEEEe
Q 001978 179 SNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~ 198 (987)
. +.++.++....++-|.
T Consensus 236 -~--~~l~~~~~dg~v~iwd 252 (313)
T 3odt_A 236 -N--GDIVSCGEDRTVRIWS 252 (313)
T ss_dssp -T--SCEEEEETTSEEEEEC
T ss_pred -C--CCEEEEecCCEEEEEE
Confidence 2 2366667788888775
No 38
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.38 E-value=0.0076 Score=66.95 Aligned_cols=150 Identities=11% Similarity=0.084 Sum_probs=104.3
Q ss_pred CceeEEEEeC----CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 22 GVITCMSAGN----DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 22 ~~i~~~~v~n----n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
..|++++++. +.++.|..+|+|..||+ .+..+..+..+ ...|..+-.+|.|..++.++. +|....+.
T Consensus 197 ~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h-----~~~v~~v~~~p~~~~l~s~s~---D~~v~lwd 268 (354)
T 2pbi_B 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH-----ESDVNSVRYYPSGDAFASGSD---DATCRLYD 268 (354)
T ss_dssp SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TSCEEEEE
T ss_pred CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-----CCCeEEEEEeCCCCEEEEEeC---CCeEEEEE
Confidence 4588888853 68999999999999999 54444444433 367999999999999888887 89888887
Q ss_pred cCCCCc-eeccCC-CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 97 AKWSKP-RVLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 97 ~~~~k~-k~L~kl-kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
....+. ..+..- ....+.+++|++. ..-++.|+.+|.|....+..+ +.+..+..-.++|+++.|.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~------g~~l~~g~~d~~i~vwd~~~~-------~~~~~l~~h~~~v~~l~~s 335 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLS------GRLLFAGYNDYTINVWDVLKG-------SRVSILFGHENRVSTLRVS 335 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTT------SSEEEEEETTSCEEEEETTTC-------SEEEEECCCSSCEEEEEEC
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCC------CCEEEEEECCCcEEEEECCCC-------ceEEEEECCCCcEEEEEEC
Confidence 654432 222211 1247899999943 236788999999998877543 1222333324679999986
Q ss_pred eeccCCCceEEEEEECCCeEEEE
Q 001978 175 TASLSNGTRYYVMAVTPTRLYSF 197 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f 197 (987)
. +.++++.++....+.-|
T Consensus 336 p-----dg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 336 P-----DGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp T-----TSSCEEEEETTSEEEEE
T ss_pred C-----CCCEEEEEcCCCCEEec
Confidence 2 33577777777777766
No 39
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.37 E-value=0.0082 Score=68.18 Aligned_cols=149 Identities=10% Similarity=0.065 Sum_probs=104.5
Q ss_pred CceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 22 GVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 22 ~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
+.|+|++.+. +.++-|..+|+|..||+ .+.....+.-+ ...|..+-++|.|..++.++. +|....++..
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h-----~~~V~~v~~~~~~~~l~sgs~---D~~i~iwd~~ 180 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH-----TDSVQDISFDHSGKLLASCSA---DMTIKLWDFQ 180 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCC-----SSCEEEEEECTTSSEEEEEET---TSCCCEEETT
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEecc-----CCcEEEEEEcCCCCEEEEEeC---CCeEEEEeCC
Confidence 4689999986 48888999999999999 55544444433 367999999999999888887 8988777765
Q ss_pred CCCceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEee
Q 001978 99 WSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (987)
Q Consensus 99 ~~k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~ 176 (987)
..+ .+..++| ..|.+|+|++. ...++.|+.+|.|....+..+ +.++. +.-. ...|..+.+.
T Consensus 181 ~~~--~~~~~~~h~~~V~~v~~~p~------~~~l~s~s~D~~i~~wd~~~~----~~~~~-~~~h--~~~v~~~~~~-- 243 (410)
T 1vyh_C 181 GFE--CIRTMHGHDHNVSSVSIMPN------GDHIVSASRDKTIKMWEVQTG----YCVKT-FTGH--REWVRMVRPN-- 243 (410)
T ss_dssp SSC--EEECCCCCSSCEEEEEECSS------SSEEEEEETTSEEEEEETTTC----CEEEE-EECC--SSCEEEEEEC--
T ss_pred CCc--eeEEEcCCCCCEEEEEEeCC------CCEEEEEeCCCeEEEEECCCC----cEEEE-EeCC--CccEEEEEEC--
Confidence 443 2333333 57999999942 236888999999988777543 11222 2222 3568888764
Q ss_pred ccCCCceEEEEEECCCeEEEEe
Q 001978 177 SLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~ 198 (987)
.+.++++.++....+.-|.
T Consensus 244 ---~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 244 ---QDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp ---TTSSEEEEEETTSCEEEEE
T ss_pred ---CCCCEEEEEcCCCeEEEEE
Confidence 2335677767677777675
No 40
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.011 Score=65.00 Aligned_cols=163 Identities=10% Similarity=0.104 Sum_probs=107.8
Q ss_pred CCCceeEEEEeC----CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-------------CCCeEE
Q 001978 20 GRGVITCMSAGN----DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-------------GGSHCI 81 (987)
Q Consensus 20 ~~~~i~~~~v~n----n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-------------~G~hll 81 (987)
..+.|++++.+. +.++.|..+|.|..+|+ .......+.+.. ....|..+-.+| .|.+++
T Consensus 100 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (379)
T 3jrp_A 100 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFV 176 (379)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC---CTTCEEEEEECCCC----------CTTCEEE
T ss_pred CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC---CCCceEEEEEcCccccccccccCCCCCCEEE
Confidence 345799999984 58999999999999999 544333333321 136799999999 588888
Q ss_pred EEeecCCCccEEEEecCCCC--ceeccCCC--CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeee
Q 001978 82 ATIVGSGGAETFYTHAKWSK--PRVLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKL 157 (987)
Q Consensus 82 i~~~~~~~g~~~Y~~~~~~k--~k~L~klk--g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~ 157 (987)
+++. +|..+.+.....+ ...+..++ ...|.+++|++... ...-++.|+.+|.|....+.... ......
T Consensus 177 ~~~~---dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~---~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~ 248 (379)
T 3jrp_A 177 TGGA---DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---LRSYLASVSQDRTCIIWTQDNEQ--GPWKKT 248 (379)
T ss_dssp EEET---TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS---SSEEEEEEETTSCEEEEEESSTT--SCCEEE
T ss_pred EEeC---CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC---CCCeEEEEeCCCEEEEEeCCCCC--ccceee
Confidence 8887 8888777654332 12222233 35799999995310 02468889999999888876542 112233
Q ss_pred eeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 158 LFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 158 v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
++.....+++|+++.|.. +.++++.++....++-|.
T Consensus 249 ~~~~~~~~~~v~~~~~s~-----~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 249 LLKEEKFPDVLWRASWSL-----SGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp ESSSSCCSSCEEEEEECS-----SSCCEEEEESSSSEEEEE
T ss_pred eeccccCCCcEEEEEEcC-----CCCEEEEecCCCcEEEEe
Confidence 333322346799999863 335677777777777664
No 41
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.36 E-value=0.0025 Score=69.89 Aligned_cols=155 Identities=7% Similarity=-0.042 Sum_probs=106.4
Q ss_pred CceeEEEEeCC------EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEE
Q 001978 22 GVITCMSAGND------VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETF 93 (987)
Q Consensus 22 ~~i~~~~v~nn------~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~ 93 (987)
+.|++++.+.+ .++.|..+|.|..+|+ ....+..+.-+ ...|..+-..| .|..+++++. +|..+
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~s~~~---dg~i~ 141 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH-----GNAINELKFHPRDPNLLLSVSK---DHALR 141 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESC-----CSCEEEEEECSSCTTEEEEEET---TSCEE
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCC-----CCcEEEEEECCCCCCEEEEEeC---CCeEE
Confidence 56899999877 8999999999999999 55445544433 46899999999 8888888887 89988
Q ss_pred EEecCCCCc-eecc--CCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceee--------------
Q 001978 94 YTHAKWSKP-RVLS--KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIK-------------- 156 (987)
Q Consensus 94 Y~~~~~~k~-k~L~--klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k-------------- 156 (987)
.++....+. ..+. .-.+..|.+++|++. ...++.|+.+|.|....+..... .+.++
T Consensus 142 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~ 214 (366)
T 3k26_A 142 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLL------GEKIMSCGMDHSLKLWRINSKRM-MNAIKESYDYNPNKTNRPF 214 (366)
T ss_dssp EEETTTTEEEEEECSTTSCSSCEEEEEECTT------SSEEEEEETTSCEEEEESCSHHH-HHHHHHHHTCCGGGCSSCC
T ss_pred EEEeecCeEEEEecccccccCceeEEEECCC------CCEEEEecCCCCEEEEECCCCcc-ccccceeEEecCCCCcccc
Confidence 888765432 2332 123468999999942 23788999999999988764310 00000
Q ss_pred --------eeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 157 --------LLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 157 --------~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.........++|+++.|. + ++++.++....++.|.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~v~~~~~~-----~--~~l~~~~~d~~i~~wd 257 (366)
T 3k26_A 215 ISQKIHFPDFSTRDIHRNYVDCVRWL-----G--DLILSKSCENAIVCWK 257 (366)
T ss_dssp CCEEECCCSEEECSSCSSCCCEEEEE-----T--TEEEEECSSSEEEEEE
T ss_pred cceeeccCccccccCCcceEEEEEEc-----C--CEEEEEecCCEEEEEe
Confidence 000111123679999986 1 4677766778888775
No 42
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.36 E-value=0.006 Score=67.76 Aligned_cols=154 Identities=12% Similarity=0.190 Sum_probs=102.5
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEE-eecCCCccEEEEe
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIAT-IVGSGGAETFYTH 96 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~-~~~~~~g~~~Y~~ 96 (987)
.+.|+|++.+. +.|+-|..+|+|..+|+ .+..+..+.-+ ...|..+-..|.|.+++++ +. +|....++
T Consensus 127 ~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h-----~~~V~~~~~~~~~~~~l~s~s~---D~~v~iwd 198 (344)
T 4gqb_B 127 DDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH-----AAQVTCVAASPHKDSVFLSCSE---DNRILLWD 198 (344)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEECSSCTTEEEEEET---TSCEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc-----CCceEEEEecCCCCCceeeecc---cccccccc
Confidence 35699999975 48899999999999999 54434433333 4689999999999876654 44 78888887
Q ss_pred cCCCCc-eecc-CCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 97 AKWSKP-RVLS-KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 97 ~~~~k~-k~L~-klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
....+. +.+. ...+..+.+++|++.. ..-++.|+.+|.|....+..+ +.+..+..-..+|++|.|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----~~~l~sg~~dg~v~~wd~~~~-------~~~~~~~~h~~~v~~v~fs 266 (344)
T 4gqb_B 199 TRCPKPASQIGCSAPGYLPTSLAWHPQQ-----SEVFVFGDENGTVSLVDTKST-------SCVLSSAVHSQCVTGLVFS 266 (344)
T ss_dssp TTSSSCEEECC----CCCEEEEEECSSC-----TTEEEEEETTSEEEEEESCC---------CCEEEECCSSCEEEEEEC
T ss_pred ccccceeeeeecceeeccceeeeecCCC-----CcceEEeccCCcEEEEECCCC-------cEEEEEcCCCCCEEEEEEc
Confidence 765543 2332 2346689999999432 224667999999887766443 2223333223679999986
Q ss_pred eeccCCCceEEEEEECCCeEEEEe
Q 001978 175 TASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
. ...++++-++....++-|.
T Consensus 267 p----~g~~~lasgs~D~~i~vwd 286 (344)
T 4gqb_B 267 P----HSVPFLASLSEDCSLAVLD 286 (344)
T ss_dssp S----SSSCCEEEEETTSCEEEEC
T ss_pred c----CCCeEEEEEeCCCeEEEEE
Confidence 2 2235666677777788775
No 43
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=97.32 E-value=0.015 Score=63.28 Aligned_cols=158 Identities=9% Similarity=-0.043 Sum_probs=107.5
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.|++++.+. +.++-|-.+|+|..||+ .+..+..+.-+ ...|..+-++|.|.+++.++. +|....+..
T Consensus 65 ~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~s~---D~~i~vwd~ 136 (319)
T 3frx_A 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH-----KSDVMSVDIDKKASMIISGSR---DKTIKVWTI 136 (319)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC-----SSCEEEEEECTTSCEEEEEET---TSCEEEEET
T ss_pred cccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC-----CCcEEEEEEcCCCCEEEEEeC---CCeEEEEEC
Confidence 35688888875 48888889999999999 55545555444 467999999999999988887 898888876
Q ss_pred CCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 98 ~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
.......+.. ....|.+++|.+......+...++.|+.+|.|....+... +....+..-.++|.++.|..
T Consensus 137 ~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-------~~~~~~~~h~~~v~~~~~sp-- 206 (319)
T 3frx_A 137 KGQCLATLLG-HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-------QIEADFIGHNSNINTLTASP-- 206 (319)
T ss_dssp TSCEEEEECC-CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT-------EEEEEECCCCSCEEEEEECT--
T ss_pred CCCeEEEEec-cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-------hhheeecCCCCcEEEEEEcC--
Confidence 5443333332 2347999999854322223346888999999988776542 22223333236799998852
Q ss_pred cCCCceEEEEEECCCeEEEEec
Q 001978 178 LSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~g 199 (987)
+.++++.++....+.-|.-
T Consensus 207 ---~g~~l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 207 ---DGTLIASAGKDGEIMLWNL 225 (319)
T ss_dssp ---TSSEEEEEETTCEEEEEET
T ss_pred ---CCCEEEEEeCCCeEEEEEC
Confidence 3367777777778887753
No 44
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=97.31 E-value=0.11 Score=58.87 Aligned_cols=143 Identities=14% Similarity=0.145 Sum_probs=95.9
Q ss_pred eCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCc-eeccC
Q 001978 30 GNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKP-RVLSK 107 (987)
Q Consensus 30 ~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~-k~L~k 107 (987)
++|+|++|+ +++|+.||. .+.....+.++. ....|+.|-..|.|.++++++. +|....+.....+. +.+.
T Consensus 115 ~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~---~~~~V~sv~fspdg~~lasgs~---Dg~v~iWd~~~~~~~~~~~- 186 (420)
T 4gga_A 115 SGNVLAVAL-DNSVYLWSASSGDILQLLQMEQ---PGEYISSVAWIKEGNYLAVGTS---SAEVQLWDVQQQKRLRNMT- 186 (420)
T ss_dssp TTSEEEEEE-TTEEEEEETTTCCEEEEEECCS---TTCCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEEC-
T ss_pred CCCEEEEEe-CCEEEEEECCCCCEEEEEEecC---CCCcEEEEEECCCCCEEEEEEC---CCeEEEEEcCCCcEEEEEe-
Confidence 467999998 679999999 554444455542 2367999999999999999988 89998888765432 2222
Q ss_pred CCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEE
Q 001978 108 LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVM 187 (987)
Q Consensus 108 lkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ 187 (987)
-....|.+++|+. .-++.|+.+|.+........ ...+ ..+..-...+.++.+.. ..+.++.
T Consensus 187 ~h~~~v~~~s~~~--------~~l~sgs~d~~i~~~d~~~~---~~~~---~~~~~h~~~~~~~~~~~-----~g~~l~s 247 (420)
T 4gga_A 187 SHSARVGSLSWNS--------YILSSGSRSGHIHHHDVRVA---EHHV---ATLSGHSQEVCGLRWAP-----DGRHLAS 247 (420)
T ss_dssp CCSSCEEEEEEET--------TEEEEEETTSEEEEEETTSS---SCEE---EEEECCSSCEEEEEECT-----TSSEEEE
T ss_pred CCCCceEEEeeCC--------CEEEEEeCCCceeEeeeccc---ceee---EEecccccceeeeeecC-----CCCeeee
Confidence 2335789999982 25778889998887765432 1112 22322235688888852 2356666
Q ss_pred EECCCeEEEEec
Q 001978 188 AVTPTRLYSFTG 199 (987)
Q Consensus 188 ast~~rly~f~g 199 (987)
.+....++-|..
T Consensus 248 ~~~D~~v~i~~~ 259 (420)
T 4gga_A 248 GGNDNLVNVWPS 259 (420)
T ss_dssp EETTSCEEEEES
T ss_pred eeccccceEEee
Confidence 666777776653
No 45
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.31 E-value=0.0065 Score=67.64 Aligned_cols=155 Identities=10% Similarity=0.149 Sum_probs=102.6
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.|+|++.+. +.++.|..+|+|..+|+ .+..+..+..+ ...|..+-+.|.|..++++.. .+|....+..
T Consensus 139 ~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h-----~~~v~~v~~s~~~~~~~~s~~--~dg~v~~wd~ 211 (357)
T 4g56_B 139 DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH-----SSEVNCVAACPGKDTIFLSCG--EDGRILLWDT 211 (357)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEECTTCSSCEEEEE--TTSCEEECCT
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-----CCCEEEEEEccCCCceeeeec--cCCceEEEEC
Confidence 35699999985 48889999999999999 55444444443 367899999999876555433 1788877766
Q ss_pred CCCCceeccCC--CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 98 KWSKPRVLSKL--KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 98 ~~~k~k~L~kl--kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
...+......+ .+..|.+|+|++.. ..-++.|+.+|.|....+... +..+ .+.....+|+++.|..
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~v~~sp~~-----~~~la~g~~d~~i~~wd~~~~----~~~~---~~~~~~~~v~~l~~sp 279 (357)
T 4g56_B 212 RKPKPATRIDFCASDTIPTSVTWHPEK-----DDTFACGDETGNVSLVNIKNP----DSAQ---TSAVHSQNITGLAYSY 279 (357)
T ss_dssp TSSSCBCBCCCTTCCSCEEEEEECTTS-----TTEEEEEESSSCEEEEESSCG----GGCE---EECCCSSCEEEEEECS
T ss_pred CCCceeeeeeeccccccccchhhhhcc-----cceEEEeecccceeEEECCCC----cEeE---EEeccceeEEEEEEcC
Confidence 55443222112 34579999999432 224677999999988877543 1122 2332236799999852
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 001978 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (987)
...++++-++....++-|.
T Consensus 280 ----~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 280 ----HSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp ----SSSCCEEEEETTSCEEEEC
T ss_pred ----CCCCEEEEEeCCCEEEEEE
Confidence 2235666667777788775
No 46
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.0065 Score=75.08 Aligned_cols=164 Identities=10% Similarity=0.109 Sum_probs=109.3
Q ss_pred CCceeEEEEe----CCEEEEEecCCeEEEEeC-CCC--CceeeEcCCCCCCccceeEEEeCCC--CCeEEEEeecCCCcc
Q 001978 21 RGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAG--DSYDIDLSAGRPGEQSIHKVFVDPG--GSHCIATIVGSGGAE 91 (987)
Q Consensus 21 ~~~i~~~~v~----nn~l~~~~~~g~l~ridl-~~~--~~~~~~l~~~~~~~~~i~~i~lDp~--G~hlli~~~~~~~g~ 91 (987)
.+.|++++.+ ++.++.|..+|+|..+|+ .+. .+..+.-+ ...|..+-..|. |..+++++. +|.
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h-----~~~V~~v~~sp~~~~~~l~sgs~---dg~ 124 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH-----SASVNSVQWAPHEYGPLLLVASS---DGK 124 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCC-----SSCEEEEEECCGGGCSEEEEEET---TSE
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCC-----CCCeEEEEECCCCCCCEEEEEeC---CCc
Confidence 4679999997 679999999999999999 432 12222212 468999999999 988888887 898
Q ss_pred EEEEecCCCC---ceeccCCCCceEEEEeecCCCCC-------CCCcceEEEEcCCCcEEEEEeccCccccceeeeeeee
Q 001978 92 TFYTHAKWSK---PRVLSKLKGLVVNAVAWNRQQIT-------EASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL 161 (987)
Q Consensus 92 ~~Y~~~~~~k---~k~L~klkg~~i~sVaw~~~~~~-------~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l 161 (987)
...+.....+ ...+.. ....|.+++|++.... ..+...++.|+.+|.|....+.... ...+.+..+
T Consensus 125 I~vwdl~~~~~~~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~~ 200 (753)
T 3jro_A 125 VSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA---QTYVLESTL 200 (753)
T ss_dssp EEEEECCSSSCCCCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT---TEEEEEEEE
T ss_pred EEEEEeecCCCcceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc---ccceeeeee
Confidence 8877765442 222322 3458999999953100 0123479999999999998886542 122333334
Q ss_pred CCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 162 NELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 162 ~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
..-.++|+++.|..- ....++++.++....++-|.
T Consensus 201 ~~h~~~V~~l~~sp~--~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 201 EGHSDWVRDVAWSPT--VLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp CCCSSCEEEEEECCC--CSSSEEEEEEESSSCEEEEE
T ss_pred cCCCCcEEEEEeccC--CCCCCEEEEEecCCEEEEec
Confidence 433467999999631 00036777777777777775
No 47
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=97.29 E-value=0.01 Score=64.02 Aligned_cols=163 Identities=9% Similarity=0.020 Sum_probs=104.3
Q ss_pred CCCceeEEEEe----CCEEEEEecCCeEEEEeC-CCCCc------eeeEcCCCCCCccceeEEEeCCC--CCeEEEEeec
Q 001978 20 GRGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDS------YDIDLSAGRPGEQSIHKVFVDPG--GSHCIATIVG 86 (987)
Q Consensus 20 ~~~~i~~~~v~----nn~l~~~~~~g~l~ridl-~~~~~------~~~~l~~~~~~~~~i~~i~lDp~--G~hlli~~~~ 86 (987)
..+.|++++.+ ++.++.|..+|.|..||+ .+... ..+... ......|..+-.+|. |.++++++.
T Consensus 56 ~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~- 132 (351)
T 3f3f_A 56 HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL--NDSKGSLYSVKFAPAHLGLKLACLGN- 132 (351)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE--CCCSSCEEEEEECCGGGCSEEEEEET-
T ss_pred CCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee--cccCCceeEEEEcCCCCCcEEEEecC-
Confidence 34579999997 578999999999999999 43211 111111 112468999999999 999988887
Q ss_pred CCCccEEEEecCCCCc-eecc------------CCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccc
Q 001978 87 SGGAETFYTHAKWSKP-RVLS------------KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREK 153 (987)
Q Consensus 87 ~~~g~~~Y~~~~~~k~-k~L~------------klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~ 153 (987)
+|..+.+.....+. +.+. .-....+.+++|++... +...+++|+.+|.+.......+
T Consensus 133 --dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~~~~~~----- 202 (351)
T 3f3f_A 133 --DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRF---SPEKLAVSALEQAIIYQRGKDG----- 202 (351)
T ss_dssp --TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSS---SCCEEEEEETTEEEEEEECTTS-----
T ss_pred --CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCC---CCcEEEEecCCCcEEEEccCCC-----
Confidence 89888877544321 1110 01335789999995422 2347899999997744433222
Q ss_pred eeeeeeeeCCCCCceeeEEEEeeccCCC--ceEEEEEECCCeEEEEe
Q 001978 154 YIKLLFELNELPEAFMGLQMETASLSNG--TRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 154 ~~k~v~~l~~~~~~I~gi~~~~~~~~~~--~~~~i~ast~~rly~f~ 198 (987)
..+.+..+..-.++|+++.|..- +. .++++.++....++-|.
T Consensus 203 ~~~~~~~~~~h~~~i~~~~~~p~---~~~~~~~l~s~~~dg~i~iwd 246 (351)
T 3f3f_A 203 KLHVAAKLPGHKSLIRSISWAPS---IGRWYQLIATGCKDGRIRIFK 246 (351)
T ss_dssp CEEEEEECCCCCSCEEEEEECCC---SSCSSEEEEEEETTSCEEEEE
T ss_pred ceeeeeecCCCCcceeEEEECCC---CCCcceEEEEEcCCCeEEEEe
Confidence 23334445443467999999631 11 15777777777777664
No 48
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.021 Score=62.56 Aligned_cols=160 Identities=13% Similarity=0.085 Sum_probs=103.9
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeCCCCCceee-EcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 21 RGVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDI-DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 21 ~~~i~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
.+.|.+++.+.+.|+.|..+|+|..+|+.......+ .+... .-...|..+-..|.|..++.++. +|....+....
T Consensus 14 ~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~las~s~---D~~v~iw~~~~ 89 (330)
T 2hes_X 14 KEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDET-AHKKAIRSVAWRPHTSLLAAGSF---DSTVSIWAKEE 89 (330)
T ss_dssp SSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTT-CCCSCEEEEEECTTSSEEEEEET---TSCEEEEEC--
T ss_pred CCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecC-CccCCEEEEEECCCCCEEEEEeC---CCcEEEEEccc
Confidence 457999999999999999999999999932222112 12111 01367999999999998888887 88887776532
Q ss_pred C-----CceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEE
Q 001978 100 S-----KPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQ 172 (987)
Q Consensus 100 ~-----k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~ 172 (987)
. ..+.+..++| ..|.+|+|++. ...++.|+.+|.|....+..... ..+.+..+..-..+|+++.
T Consensus 90 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~------g~~las~s~D~~v~iwd~~~~~~---~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 90 SADRTFEMDLLAIIEGHENEVKGVAWSND------GYYLATCSRDKSVWIWETDESGE---EYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp -----CCCEEEEEEC----CEEEEEECTT------SCEEEEEETTSCEEEEECCTTCC---CCEEEEEECCCSSCEEEEE
T ss_pred CcCccccceeEEEEcCCCCcEEEEEECCC------CCEEEEEeCCCEEEEEeccCCCC---CeEEEEEeccCCCceEEEE
Confidence 1 1233333444 37999999943 23688889999999887743211 1222333433236799999
Q ss_pred EEeeccCCCceEEEEEECCCeEEEEe
Q 001978 173 METASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 173 ~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
|.. +.++++-++....+.-|.
T Consensus 161 ~~p-----~~~~l~s~s~D~~i~iW~ 181 (330)
T 2hes_X 161 WHP-----SEALLASSSYDDTVRIWK 181 (330)
T ss_dssp ECS-----SSSEEEEEETTSCEEEEE
T ss_pred ECC-----CCCEEEEEcCCCeEEEEE
Confidence 863 235677777676666664
No 49
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.27 E-value=0.0056 Score=72.65 Aligned_cols=160 Identities=12% Similarity=0.099 Sum_probs=107.2
Q ss_pred CCceeEEEEeCCEEEEEec-CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 21 RGVITCMSAGNDVIVLGTS-KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 21 ~~~i~~~~v~nn~l~~~~~-~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
...+++++.+++.++.|.. +|.|..+|+.........+. .....|..+-++|.|.++++++. +|..+.++...
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~---dg~i~iw~~~~ 519 (615)
T 1pgu_A 446 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT---PLRAKPSYISISPSETYIAAGDV---MGKILLYDLQS 519 (615)
T ss_dssp SSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSS---CCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTT
T ss_pred CCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccC---CccCceEEEEECCCCCEEEEcCC---CCeEEEeeCCC
Confidence 3468999999999999999 99999999932222111121 12468999999999999999888 89988887765
Q ss_pred CCcee-ccCCCCceEEEEeecCCCC----CCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 100 SKPRV-LSKLKGLVVNAVAWNRQQI----TEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 100 ~k~k~-L~klkg~~i~sVaw~~~~~----~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
.+... +.......|++++|++... ...+..-++.|+.+|.|+...+.... +.+..+..-.++|+++.|.
T Consensus 520 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~h~~~v~~l~~s 593 (615)
T 1pgu_A 520 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM------KIIKALNAHKDGVNNLLWE 593 (615)
T ss_dssp TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT------CCEEETTSSTTCEEEEEEE
T ss_pred CcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc------eechhhhcCccceEEEEEc
Confidence 43322 2211346899999995110 00023468889999999998886531 1222233223679999997
Q ss_pred eeccCCCceEEEEEECCCeEEEEe
Q 001978 175 TASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
. +.+ ++.++....++.|.
T Consensus 594 ~-----~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 594 T-----PST-LVSSGADACIKRWN 611 (615)
T ss_dssp E-----TTE-EEEEETTSCEEEEE
T ss_pred C-----CCC-eEEecCCceEEEEe
Confidence 4 224 66666677777663
No 50
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.27 E-value=0.012 Score=63.68 Aligned_cols=154 Identities=6% Similarity=0.014 Sum_probs=108.0
Q ss_pred CCCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 20 GRGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 20 ~~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
-.+.|++++.+. +.++-|..+|+|..||+ .+..+..+..+ ...|..+-+.|.|.+++.++. +|....++
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~s~---d~~i~vwd 83 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVT-----ETPVRAGKFIARKNWIIVGSD---DFRIRVFN 83 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-----SSCEEEEEEEGGGTEEEEEET---TSEEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeecc-----CCcEEEEEEeCCCCEEEEECC---CCEEEEEE
Confidence 356799999985 47888889999999999 55545555544 357888989999999998888 89888887
Q ss_pred cCCCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 97 AKWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 97 ~~~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
....+. +.+.. ..-.|.+|+|++. ...++.|+.+|.|....+..+ ..+...+.-. ..+|+++.|..
T Consensus 84 ~~~~~~~~~~~~-h~~~v~~~~~~~~------~~~l~sgs~D~~v~lWd~~~~----~~~~~~~~~h--~~~v~~v~~~p 150 (304)
T 2ynn_A 84 YNTGEKVVDFEA-HPDYIRSIAVHPT------KPYVLSGSDDLTVKLWNWENN----WALEQTFEGH--EHFVMCVAFNP 150 (304)
T ss_dssp TTTCCEEEEEEC-CSSCEEEEEECSS------SSEEEEEETTSCEEEEEGGGT----TEEEEEECCC--CSCEEEEEECT
T ss_pred CCCCcEEEEEeC-CCCcEEEEEEcCC------CCEEEEECCCCeEEEEECCCC----cchhhhhccc--CCcEEEEEECC
Confidence 655432 22321 2347999999943 236888999999988877543 1223333323 36799999862
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 001978 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.+...++.++....+.-|.
T Consensus 151 ----~~~~~l~sgs~D~~v~iwd 169 (304)
T 2ynn_A 151 ----KDPSTFASGCLDRTVKVWS 169 (304)
T ss_dssp ----TCTTEEEEEETTSEEEEEE
T ss_pred ----CCCCEEEEEeCCCeEEEEE
Confidence 1235677777777777775
No 51
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.27 E-value=0.012 Score=66.16 Aligned_cols=155 Identities=8% Similarity=0.059 Sum_probs=100.7
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeC-CCC-------CceeeEcCCCCCCccceeEEEeCCCCC-eEEEEeecCC
Q 001978 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAG-------DSYDIDLSAGRPGEQSIHKVFVDPGGS-HCIATIVGSG 88 (987)
Q Consensus 21 ~~~i~~~~v~n---n~l~~~~~~g~l~ridl-~~~-------~~~~~~l~~~~~~~~~i~~i~lDp~G~-hlli~~~~~~ 88 (987)
.+.|++++.+. +.++.|..+|+|..||+ ... .+..+.-+ ...|..+-..|.|. .++.++.
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~p~~~~~l~s~~~--- 152 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH-----TKRVGIVAWHPTAQNVLLSAGC--- 152 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC-----SSCEEEEEECSSBTTEEEEEET---
T ss_pred CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC-----CCeEEEEEECcCCCCEEEEEcC---
Confidence 45799999964 69999999999999999 442 22333323 46899999999995 5666565
Q ss_pred CccEEEEecCCCCc-eecc-CCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCC
Q 001978 89 GAETFYTHAKWSKP-RVLS-KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPE 166 (987)
Q Consensus 89 ~g~~~Y~~~~~~k~-k~L~-klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~ 166 (987)
+|....++....+. ..+. .-....|.+++|++. ...++.|+.+|.|....+..+ +....+..... ..
T Consensus 153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~-~~ 221 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD------GALICTSCRDKRVRVIEPRKG----TVVAEKDRPHE-GT 221 (402)
T ss_dssp TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT------SSCEEEEETTSEEEEEETTTT----EEEEEEECSSC-SS
T ss_pred CCEEEEEECCCCCccEEEecCCCCCceEEEEECCC------CCEEEEEecCCcEEEEeCCCC----ceeeeeccCCC-CC
Confidence 78888888665432 2331 223458999999942 236889999999998877543 11222111221 12
Q ss_pred ceeeEEEEeeccCCCceEEEEE---ECCCeEEEEec
Q 001978 167 AFMGLQMETASLSNGTRYYVMA---VTPTRLYSFTG 199 (987)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~a---st~~rly~f~g 199 (987)
.+..+.|.. +.++++.. +....++-|.-
T Consensus 222 ~~~~~~~~~-----~~~~l~~g~~~~~d~~i~iwd~ 252 (402)
T 2aq5_A 222 RPVHAVFVS-----EGKILTTGFSRMSERQVALWDT 252 (402)
T ss_dssp SCCEEEECS-----TTEEEEEEECTTCCEEEEEEET
T ss_pred cceEEEEcC-----CCcEEEEeccCCCCceEEEEcC
Confidence 378888852 23455554 35667776653
No 52
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.24 E-value=0.024 Score=61.79 Aligned_cols=164 Identities=12% Similarity=0.095 Sum_probs=106.7
Q ss_pred CCCceeEEEEe--------CCEEEEEecCCeEEEEeC-CCC-CceeeEcCCCCCCccceeEEE----eCCCCCeEEEEee
Q 001978 20 GRGVITCMSAG--------NDVIVLGTSKGWLIRHDF-GAG-DSYDIDLSAGRPGEQSIHKVF----VDPGGSHCIATIV 85 (987)
Q Consensus 20 ~~~~i~~~~v~--------nn~l~~~~~~g~l~ridl-~~~-~~~~~~l~~~~~~~~~i~~i~----lDp~G~hlli~~~ 85 (987)
..+.|++++.. ++.++.|..+|.|..+|+ .+. .+..+..+.... ...|..+- ++|.|.++++++.
T Consensus 110 ~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~~~~ 188 (357)
T 3i2n_A 110 HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN-KRDCWTVAFGNAYNQEERVVCAGYD 188 (357)
T ss_dssp CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC-CCCEEEEEEECCCC-CCCEEEEEET
T ss_pred cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC-CCceEEEEEEeccCCCCCEEEEEcc
Confidence 34568888653 458999999999999999 554 355554443211 24666666 6799999998887
Q ss_pred cCCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCC
Q 001978 86 GSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELP 165 (987)
Q Consensus 86 ~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~ 165 (987)
+|..+.++....+...... ....|.+++|++.. .+...++.|+.+|.|....+.... ....+.. ..+....
T Consensus 189 ---d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~~~~~~~ 259 (357)
T 3i2n_A 189 ---NGDIKLFDLRNMALRWETN-IKNGVCSLEFDRKD---ISMNKLVATSLEGKFHVFDMRTQH-PTKGFAS-VSEKAHK 259 (357)
T ss_dssp ---TSEEEEEETTTTEEEEEEE-CSSCEEEEEESCSS---SSCCEEEEEESTTEEEEEEEEEEE-TTTEEEE-EEEECCS
T ss_pred ---CCeEEEEECccCceeeecC-CCCceEEEEcCCCC---CCCCEEEEECCCCeEEEEeCcCCC-cccceee-eccCCCc
Confidence 8999888877665544433 24589999999421 023478999999999888776531 1111111 1222223
Q ss_pred CceeeEEEEeeccCCCce-EEEEEECCCeEEEEe
Q 001978 166 EAFMGLQMETASLSNGTR-YYVMAVTPTRLYSFT 198 (987)
Q Consensus 166 ~~I~gi~~~~~~~~~~~~-~~i~ast~~rly~f~ 198 (987)
.+|+++.|.. +.+ +++.++....++-|.
T Consensus 260 ~~v~~~~~~~-----~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 260 STVWQVRHLP-----QNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp SCEEEEEEET-----TEEEEEEEEETTSEEEEEE
T ss_pred CCEEEEEECC-----CCCcEEEEEeCCCcEEEee
Confidence 6799999973 224 566666677777674
No 53
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.23 E-value=0.0077 Score=65.79 Aligned_cols=157 Identities=11% Similarity=0.090 Sum_probs=101.8
Q ss_pred ceeEEE------EeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC---CCCeEEEEeecCCCccE
Q 001978 23 VITCMS------AGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP---GGSHCIATIVGSGGAET 92 (987)
Q Consensus 23 ~i~~~~------v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp---~G~hlli~~~~~~~g~~ 92 (987)
.+.+++ -.++.++.|..+|.|..+|+ .+....... + ...|..+-++| .|.++++++. +|..
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~~~~l~~~~~---dg~i 236 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-I-----KNGVCSLEFDRKDISMNKLVATSL---EGKF 236 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-C-----SSCEEEEEESCSSSSCCEEEEEES---TTEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-C-----CCceEEEEcCCCCCCCCEEEEECC---CCeE
Confidence 678887 46789999999999999999 443322211 1 36799999999 8999999887 8888
Q ss_pred EEEecCCCC-ceecc--C--CCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccc------------ccee
Q 001978 93 FYTHAKWSK-PRVLS--K--LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKR------------EKYI 155 (987)
Q Consensus 93 ~Y~~~~~~k-~k~L~--k--lkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~------------e~~~ 155 (987)
+.++....+ .+.+. . -....|.+++|++.. ..-++.|+.+|.|....+...... ...+
T Consensus 237 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~ 311 (357)
T 3i2n_A 237 HVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQN-----RELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV 311 (357)
T ss_dssp EEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTE-----EEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred EEEeCcCCCcccceeeeccCCCcCCEEEEEECCCC-----CcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccc
Confidence 766643322 11111 0 234589999999421 124888999999998887643111 0122
Q ss_pred eeeeeeCCCCCceeeEEEEeeccCCCceEEE-EEECCCeEEEEe
Q 001978 156 KLLFELNELPEAFMGLQMETASLSNGTRYYV-MAVTPTRLYSFT 198 (987)
Q Consensus 156 k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i-~ast~~rly~f~ 198 (987)
+.+..+..-.++|+++.|.. +.++++ -++....++-|.
T Consensus 312 ~~~~~~~~~~~~v~~~~~s~-----~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 312 SLLQNVTLSTQPISSLDWSP-----DKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp EEEEEEECCSSCEEEEEECS-----SSTTEEEEEETTSEEEEEE
T ss_pred ceeeccccCCCCeeEEEEcC-----CCCeEEEEecCCCcEEEEE
Confidence 34444443346799999963 224555 356677777774
No 54
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.20 E-value=0.015 Score=66.36 Aligned_cols=147 Identities=10% Similarity=0.031 Sum_probs=103.0
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (987)
+.|+|++..++.++.|..+|.|..+|+ ....+..+.-+ ...|..+-. .|..+++++. +|....++....
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~l~~--~~~~l~sg~~---dg~i~vwd~~~~ 203 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGH-----TGSVLCLQY--DERVIITGSS---DSTVRVWDVNTG 203 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCC-----SSCEEEEEC--CSSEEEEEET---TSCEEEEESSSC
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCC-----CCcEEEEEE--CCCEEEEEcC---CCeEEEEECCCC
Confidence 458999999999999999999999999 54444433333 356777766 5778888777 899988887655
Q ss_pred Cc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccC
Q 001978 101 KP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLS 179 (987)
Q Consensus 101 k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~ 179 (987)
+. +.+. .....|.+++|++ +.++.|+.+|.|....+.... ...... .+....++|+++.+.
T Consensus 204 ~~~~~~~-~h~~~v~~l~~~~--------~~l~s~s~dg~i~vwd~~~~~--~~~~~~--~~~~~~~~v~~~~~~----- 265 (435)
T 1p22_A 204 EMLNTLI-HHCEAVLHLRFNN--------GMMVTCSKDRSIAVWDMASPT--DITLRR--VLVGHRAAVNVVDFD----- 265 (435)
T ss_dssp CEEEEEC-CCCSCEEEEECCT--------TEEEEEETTSCEEEEECSSSS--CCEEEE--EECCCSSCEEEEEEE-----
T ss_pred cEEEEEc-CCCCcEEEEEEcC--------CEEEEeeCCCcEEEEeCCCCC--Cceeee--EecCCCCcEEEEEeC-----
Confidence 43 2232 2345899999972 279999999999998876541 111112 222223679999884
Q ss_pred CCceEEEEEECCCeEEEEe
Q 001978 180 NGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 180 ~~~~~~i~ast~~rly~f~ 198 (987)
+ ++++.++....++-|.
T Consensus 266 ~--~~l~s~~~dg~i~vwd 282 (435)
T 1p22_A 266 D--KYIVSASGDRTIKVWN 282 (435)
T ss_dssp T--TEEEEEETTSEEEEEE
T ss_pred C--CEEEEEeCCCeEEEEE
Confidence 2 5777777788888775
No 55
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.16 E-value=0.012 Score=64.09 Aligned_cols=152 Identities=13% Similarity=0.106 Sum_probs=103.8
Q ss_pred CCceeEEEEe--CC-EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 21 RGVITCMSAG--ND-VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 21 ~~~i~~~~v~--nn-~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
.+.|++++.+ ++ .++.|..+|.|..+|+ .......+.-. .....|..+-.+| |..++.++. +|....++
T Consensus 56 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~~~~v~~l~~~~-~~~l~s~~~---d~~i~iwd 128 (342)
T 1yfq_A 56 KHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN---EANLGICRICKYG-DDKLIAASW---DGLIEVID 128 (342)
T ss_dssp SSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSC---CCCSCEEEEEEET-TTEEEEEET---TSEEEEEC
T ss_pred CCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEecccc---CCCCceEEEEeCC-CCEEEEEcC---CCeEEEEc
Confidence 4578999997 45 8999999999999999 77665444330 0146899999999 988888887 88888776
Q ss_pred cCC---------CC-ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc-CccccceeeeeeeeCCCC
Q 001978 97 AKW---------SK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE-KDKREKYIKLLFELNELP 165 (987)
Q Consensus 97 ~~~---------~k-~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~-~~~~e~~~k~v~~l~~~~ 165 (987)
... .+ .+.+. ....|.+++|++. .+++|+.+|.|....+.. .. ...+.. ..+ .+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~--------~l~~~~~d~~i~i~d~~~~~~---~~~~~~-~~~-~~ 193 (342)
T 1yfq_A 129 PRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSS--------RLIVGMNNSQVQWFRLPLCED---DNGTIE-ESG-LK 193 (342)
T ss_dssp HHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSS--------EEEEEESTTEEEEEESSCCTT---CCCEEE-ECS-CS
T ss_pred ccccccccccccCCeeeEEe--eCCceEEEEecCC--------cEEEEeCCCeEEEEECCcccc---ccceee-ecC-CC
Confidence 543 32 22233 3458999999832 299999999999988765 31 111221 122 13
Q ss_pred CceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 166 EAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 166 ~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.+|+++.|... +.++++.++....++-|.
T Consensus 194 ~~i~~i~~~~~----~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 194 YQIRDVALLPK----EQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp SCEEEEEECSG----GGCEEEEEETTSEEEEEE
T ss_pred CceeEEEECCC----CCCEEEEEecCCcEEEEE
Confidence 57999998520 336777777777776553
No 56
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0084 Score=67.24 Aligned_cols=159 Identities=8% Similarity=0.068 Sum_probs=102.8
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCC-CccceeEEEeCCCCCe-EEEEeecCCCc---c
Q 001978 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRP-GEQSIHKVFVDPGGSH-CIATIVGSGGA---E 91 (987)
Q Consensus 21 ~~~i~~~~v~n---n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~-~~~~i~~i~lDp~G~h-lli~~~~~~~g---~ 91 (987)
.+.|++++.+. +.++.|..+|.|..+|+ .+..+..+..+.... ....|..+-.+|.|.+ +++++. +| .
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---d~~~~~ 241 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG---SDNDPS 241 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC---CSSSCC
T ss_pred CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEEC---CCCCce
Confidence 45789999985 48899999999999999 555455554442110 0367999999999854 555554 55 6
Q ss_pred EEEEecCCC-C-ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCcee
Q 001978 92 TFYTHAKWS-K-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (987)
Q Consensus 92 ~~Y~~~~~~-k-~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~ 169 (987)
.+.+..... + .+.+..-....|.+++|++.. ..-++.|+.+|.|....+... +.+..+....++|+
T Consensus 242 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----~~~l~s~~~dg~v~~wd~~~~-------~~~~~~~~~~~~v~ 309 (416)
T 2pm9_A 242 ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD-----EHLLLSSGRDNTVLLWNPESA-------EQLSQFPARGNWCF 309 (416)
T ss_dssp CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSC-----SSCEEEEESSSEEEEECSSSC-------CEEEEEECSSSCCC
T ss_pred EEEEeCCCCCCCcEEeecCccCceeEEEeCCCC-----CCeEEEEeCCCCEEEeeCCCC-------ccceeecCCCCceE
Confidence 766665543 2 222321234589999998422 236888999999888766543 22233332236799
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 170 GLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
++.|.. ...++++.++....+.-|.
T Consensus 310 ~~~~s~----~~~~~l~s~~~d~~i~iw~ 334 (416)
T 2pm9_A 310 KTKFAP----EAPDLFACASFDNKIEVQT 334 (416)
T ss_dssp CEEECT----TCTTEEEECCSSSEEEEEE
T ss_pred EEEECC----CCCCEEEEEecCCcEEEEE
Confidence 999863 2224666666677777664
No 57
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=97.15 E-value=0.018 Score=63.54 Aligned_cols=156 Identities=14% Similarity=0.095 Sum_probs=104.3
Q ss_pred ceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 23 VITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 23 ~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
.|.+++.+. +.|+.|-.+|+|..+|+ .........+.. +-...|..+-.+|.|.+++.++. +|....+....
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~g~~l~s~s~---D~~v~iw~~~~ 92 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSE--GHQRTVRKVAWSPCGNYLASASF---DATTCIWKKNQ 92 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECS--SCSSCEEEEEECTTSSEEEEEET---TSCEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeecc--ccCCcEEEEEECCCCCEEEEEEC---CCcEEEEEccC
Confidence 688888875 47888889999999999 433222222221 12468999999999999998887 88887776655
Q ss_pred CCceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 100 SKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 100 ~k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
...+.+..++| ..|.+|+|+++ ...++.|+.+|.|....+...+ ..+.+..+..-..+|+.+.|..
T Consensus 93 ~~~~~~~~~~~h~~~v~~v~~sp~------~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~~p-- 160 (345)
T 3fm0_A 93 DDFECVTTLEGHENEVKSVAWAPS------GNLLATCSRDKSVWVWEVDEED----EYECVSVLNSHTQDVKHVVWHP-- 160 (345)
T ss_dssp C-EEEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEEECTTS----CEEEEEEECCCCSCEEEEEECS--
T ss_pred CCeEEEEEccCCCCCceEEEEeCC------CCEEEEEECCCeEEEEECCCCC----CeEEEEEecCcCCCeEEEEECC--
Confidence 44444444455 47999999943 2368889999999988876531 1222223333236799999863
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 001978 178 LSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (987)
+.++++.++....+.-|.
T Consensus 161 ---~~~~l~s~s~d~~i~~w~ 178 (345)
T 3fm0_A 161 ---SQELLASASYDDTVKLYR 178 (345)
T ss_dssp ---SSSCEEEEETTSCEEEEE
T ss_pred ---CCCEEEEEeCCCcEEEEE
Confidence 235677777666565553
No 58
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=97.14 E-value=0.0081 Score=66.62 Aligned_cols=161 Identities=9% Similarity=0.005 Sum_probs=101.7
Q ss_pred CCCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCcee-eEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 001978 20 GRGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYD-IDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 20 ~~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~-~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (987)
..+.|++++.+. +.++.|..+|+|..+|+ .+..... ..+. .....|..+-..|.|.++++++. +|....+
T Consensus 54 h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iw 127 (377)
T 3dwl_C 54 HDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLL---RLNRAATFVRWSPNEDKFAVGSG---ARVISVC 127 (377)
T ss_dssp CSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECC---CCSSCEEEEECCTTSSCCEEEES---SSCEEEC
T ss_pred CCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEec---ccCCceEEEEECCCCCEEEEEec---CCeEEEE
Confidence 345799999985 58899999999999999 4431111 1221 11468999999999999999888 8888776
Q ss_pred ecCCCC----ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCcccc-----------ceeeeeee
Q 001978 96 HAKWSK----PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKRE-----------KYIKLLFE 160 (987)
Q Consensus 96 ~~~~~k----~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e-----------~~~k~v~~ 160 (987)
+....+ .+.+..-....|.+++|++. ...++.|+.+|.|....+...+... +.-+.+..
T Consensus 128 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (377)
T 3dwl_C 128 YFEQENDWWVSKHLKRPLRSTILSLDWHPN------NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE 201 (377)
T ss_dssp CC-----CCCCEEECSSCCSCEEEEEECTT------SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC
T ss_pred EECCcccceeeeEeecccCCCeEEEEEcCC------CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhc
Confidence 654443 45554323458999999942 2368889999999988875321000 11223333
Q ss_pred eCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 161 LNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 161 l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
+ .-.++|+++.|.. +.++++.++....++-|.
T Consensus 202 ~-~~~~~v~~~~~sp-----~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 202 Y-PSGGWVHAVGFSP-----SGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp C-CCSSSEEEEEECT-----TSSCEEEEETTTEEC-CE
T ss_pred c-cCCceEEEEEECC-----CCCEEEEEeCCCcEEEEE
Confidence 3 3246799999862 235777777777776564
No 59
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=97.14 E-value=0.002 Score=71.62 Aligned_cols=154 Identities=9% Similarity=0.094 Sum_probs=99.5
Q ss_pred CCceeEEEEe--CCEEEEEecCCeEEEEeC-CC--CCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 001978 21 RGVITCMSAG--NDVIVLGTSKGWLIRHDF-GA--GDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 21 ~~~i~~~~v~--nn~l~~~~~~g~l~ridl-~~--~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (987)
.+.|+|++.+ ++.++.|..+|.|..+|+ .. ..+..+.-+ ...|..+-..|.|.+++.++. +|....+
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~s~---d~~v~vw 82 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDH-----DKIVTCVDWAPKSNRIVTCSQ---DRNAYVY 82 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCC-----SSCEEEEEECTTTCCEEEEET---TSSEEEC
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecC-----CceEEEEEEeCCCCEEEEEeC---CCeEEEE
Confidence 3468999988 557888888999999999 43 222222222 468999999999999988887 8888777
Q ss_pred ecCCCC----ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCC-CCCceee
Q 001978 96 HAKWSK----PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE-LPEAFMG 170 (987)
Q Consensus 96 ~~~~~k----~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~-~~~~I~g 170 (987)
+....+ ...+.. ....|.+++|++. ...++.|+.+|.|....+.... .+..+..+.. -.++|++
T Consensus 83 d~~~~~~~~~~~~~~~-~~~~v~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~h~~~v~~ 151 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLR-LNRAATFVRWSPN------EDKFAVGSGARVISVCYFEQEN----DWWVSKHLKRPLRSTILS 151 (377)
T ss_dssp ------CCCCEEECCC-CSSCEEEEECCTT------SSCCEEEESSSCEEECCC---------CCCCEEECSSCCSCEEE
T ss_pred EcCCCCceeeeeEecc-cCCceEEEEECCC------CCEEEEEecCCeEEEEEECCcc----cceeeeEeecccCCCeEE
Confidence 755443 233332 3458999999942 2368999999999887665431 1111122222 2367999
Q ss_pred EEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 171 LQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 171 i~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
+.|.. +.++++.++....++-|.
T Consensus 152 ~~~~~-----~~~~l~~~~~d~~i~iwd 174 (377)
T 3dwl_C 152 LDWHP-----NNVLLAAGCADRKAYVLS 174 (377)
T ss_dssp EEECT-----TSSEEEEEESSSCEEEEE
T ss_pred EEEcC-----CCCEEEEEeCCCEEEEEE
Confidence 99862 335777777777777665
No 60
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=97.14 E-value=0.035 Score=60.98 Aligned_cols=156 Identities=8% Similarity=0.003 Sum_probs=105.1
Q ss_pred CceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 22 GVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 22 ~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
+.|++++.+. ++++-|..+|+|..||+ .+..+..+.-+ ...|..+-++|.|.+++.++. +|....+...
T Consensus 77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h-----~~~v~~v~~sp~~~~l~s~~~---d~~i~~wd~~ 148 (343)
T 2xzm_R 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH-----QSEVYSVAFSPDNRQILSAGA---EREIKLWNIL 148 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC-----CSCEEEEEECSSTTEEEEEET---TSCEEEEESS
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC-----CCcEEEEEECCCCCEEEEEcC---CCEEEEEecc
Confidence 4689999874 57888889999999999 55545555444 367999999999999998887 8988888765
Q ss_pred CCCceeccCC--CCceEEEEeecCCCCC----CCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEE
Q 001978 99 WSKPRVLSKL--KGLVVNAVAWNRQQIT----EASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQ 172 (987)
Q Consensus 99 ~~k~k~L~kl--kg~~i~sVaw~~~~~~----~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~ 172 (987)
......+... ....|.+++|++.... ......++.|+.+|.|....... +.+..+..-.++|+++.
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------~~~~~~~~h~~~v~~~~ 220 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--------QIRYTFKAHESNVNHLS 220 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--------EEEEEEECCSSCEEEEE
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--------ceeEEEcCccccceEEE
Confidence 3322222211 2347999999954211 01124678899999887765211 11222322236799999
Q ss_pred EEeeccCCCceEEEEEECCCeEEEEe
Q 001978 173 METASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 173 ~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
|. .+.++++.++....++-|.
T Consensus 221 ~s-----~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 221 IS-----PNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp EC-----TTSSEEEEEETTCEEEEEE
T ss_pred EC-----CCCCEEEEEcCCCeEEEEE
Confidence 86 2336788777788888775
No 61
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=97.14 E-value=0.0054 Score=70.20 Aligned_cols=154 Identities=13% Similarity=0.139 Sum_probs=102.2
Q ss_pred CCceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCC-CCeEEEEeecCCCccEEEE
Q 001978 21 RGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPG-GSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 21 ~~~i~~~~v~---nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~-G~hlli~~~~~~~g~~~Y~ 95 (987)
.+.|+|++.+ +++|+.|..+|.|..||+ .++....+.+. +-...|+.|-..|. |..++.++. ||....+
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~---gH~~~V~~l~f~p~~~~~l~s~s~---D~~v~iw 192 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI---GAGGSITGLKFNPLNTNQFYASSM---EGTTRLQ 192 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCC---SSSCCCCEEEECSSCTTEEEEECS---SSCEEEE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEcc---CCCCCEEEEEEeCCCCCEEEEEeC---CCEEEEe
Confidence 3459999997 368999999999999999 54443323321 11468999999985 777777666 8988888
Q ss_pred ecCCCCceeccCCC--CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEE
Q 001978 96 HAKWSKPRVLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (987)
Q Consensus 96 ~~~~~k~k~L~klk--g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~ 173 (987)
+......+.+.... +..+.+++|++. ..-++.|+.+|.|....+... .+..+..-..+|++|.|
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~g~~dg~i~~wd~~~~--------~~~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSAS------SRMVVTGDNVGNVILLNMDGK--------ELWNLRMHKKKVTHVAL 258 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETT------TTEEEEECSSSBEEEEESSSC--------BCCCSBCCSSCEEEEEE
T ss_pred eccCCceeEEeccCCCCccEEEEEECCC------CCEEEEEeCCCcEeeeccCcc--------eeEEEecccceEEeeee
Confidence 77655444433222 245788999842 236888999999998876542 12223322367999998
Q ss_pred EeeccCCCceEEEEEECCCeEEEEe
Q 001978 174 ETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.. ....+++.++....+.-|.
T Consensus 259 ~p----~~~~~~~s~s~d~~v~iwd 279 (435)
T 4e54_B 259 NP----CCDWFLATASVDQTVKIWD 279 (435)
T ss_dssp CT----TCSSEEEEEETTSBCCEEE
T ss_pred cC----CCceEEEEecCcceeeEEe
Confidence 62 2224566666666666564
No 62
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.13 E-value=0.027 Score=62.58 Aligned_cols=159 Identities=9% Similarity=0.003 Sum_probs=102.6
Q ss_pred CceeEEEEeC-----CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEE-EeecCCCccEEE
Q 001978 22 GVITCMSAGN-----DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIA-TIVGSGGAETFY 94 (987)
Q Consensus 22 ~~i~~~~v~n-----n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli-~~~~~~~g~~~Y 94 (987)
..+.+++... +.++.|..+|.|..+|+ .+..+..+.-+ ...|..+-.+|.|.++++ ++. +|....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~ll~~~~~---dg~i~i 213 (408)
T 4a11_B 142 ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH-----RQEILAVSWSPRYDYILATASA---DSRVKL 213 (408)
T ss_dssp SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCC-----CSCEEEEEECSSCTTEEEEEET---TSCEEE
T ss_pred CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCC-----CCcEEEEEECCCCCcEEEEEcC---CCcEEE
Confidence 4567777754 28999999999999999 66555555433 468999999999998554 444 788877
Q ss_pred EecCCCC--ceec------------c--CCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCcccc------
Q 001978 95 THAKWSK--PRVL------------S--KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKRE------ 152 (987)
Q Consensus 95 ~~~~~~k--~k~L------------~--klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e------ 152 (987)
+.....+ .+.+ . .-....|.+++|++. ...++.|+.+|.|....+.......
T Consensus 214 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 287 (408)
T 4a11_B 214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD------GLHLLTVGTDNRMRLWNSSNGENTLVNYGKV 287 (408)
T ss_dssp EETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTCCBCCCCCCCC
T ss_pred EECCCCCcccccccccccccceeeccccccccCceeEEEEcCC------CCEEEEecCCCeEEEEECCCCccceeccccc
Confidence 7653321 1111 0 123458999999942 2368889999999888876431100
Q ss_pred ----------------------------------ceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 153 ----------------------------------KYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 153 ----------------------------------~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
...+.+..+..-.++|+++.|.. +.++++.++....++-|.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 288 CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-----NFQELYSGSRDCNILAWV 362 (408)
T ss_dssp CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-----TTTEEEEEETTSCEEEEE
T ss_pred cccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-----CCCEEEEECCCCeEEEEe
Confidence 00122223332236788888862 235777777777788775
Q ss_pred c
Q 001978 199 G 199 (987)
Q Consensus 199 g 199 (987)
-
T Consensus 363 ~ 363 (408)
T 4a11_B 363 P 363 (408)
T ss_dssp E
T ss_pred C
Confidence 3
No 63
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=97.13 E-value=0.33 Score=52.16 Aligned_cols=160 Identities=12% Similarity=0.076 Sum_probs=101.5
Q ss_pred CCceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 21 RGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 21 ~~~i~~~~v~---nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
.+.|+|++++ +++|+-|-.+|+|..||+ ..+......+....+-...|..+.++|.|.+++.+.. +|..+.+.
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~---d~~i~~~~ 114 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW---DGTLRLWD 114 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEE
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc---cccceEEe
Confidence 3569999998 357888889999999999 4333222222111111468999999999999998887 89887777
Q ss_pred cCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEee
Q 001978 97 AKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (987)
Q Consensus 97 ~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~ 176 (987)
..........+.....+.++.|.+. ...++.|+.+|.+....+... .+....+.....+|..+.+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~s~s~d~~~~~~d~~~~------~~~~~~~~~~~~~v~~~~~~~- 181 (340)
T 4aow_A 115 LTTGTTTRRFVGHTKDVLSVAFSSD------NRQIVSGSRDKTIKLWNTLGV------CKYTVQDESHSEWVSCVRFSP- 181 (340)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTT------SSCEEEEETTSCEEEECTTSC------EEEEECSSSCSSCEEEEEECS-
T ss_pred ecccceeeeecCCCCceeEEEEeec------CccceeecCCCeEEEEEeCCC------ceEEEEeccccCcccceEEcc-
Confidence 6655443333334557778888732 236888999998877654332 122222332235688877753
Q ss_pred ccCCCceEEEEEECCCeEEEEe
Q 001978 177 SLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~ 198 (987)
.+...+++-++....++.|.
T Consensus 182 --~~~~~~~~s~~~d~~i~i~d 201 (340)
T 4aow_A 182 --NSSNPIIVSCGWDKLVKVWN 201 (340)
T ss_dssp --CSSSCEEEEEETTSCEEEEE
T ss_pred --CCCCcEEEEEcCCCEEEEEE
Confidence 12234455555566676664
No 64
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.11 E-value=0.026 Score=63.38 Aligned_cols=161 Identities=11% Similarity=0.054 Sum_probs=107.4
Q ss_pred CCCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 20 GRGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 20 ~~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
..+.|++++.+. +.++.|..+|.|..+|+ .+..+..+.-+ ...|..+-++|.|..++.++. +|....++
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~~~---d~~v~iwd 209 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH-----RATVTDIAIIDRGRNVLSASL---DGTIRLWE 209 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC-----SSCEEEEEEETTTTEEEEEET---TSCEEEEE
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC-----CCcEEEEEEcCCCCEEEEEcC---CCcEEEeE
Confidence 345799999974 48999999999999999 66666655443 468999999999999998887 89888887
Q ss_pred cCCCCc-eeccC--CCCceEEEEeecCCCCC---------------CCCcceEEEEcCCCcEEEEEeccCccccceeeee
Q 001978 97 AKWSKP-RVLSK--LKGLVVNAVAWNRQQIT---------------EASTKEIILGTDTGQLHEMAVDEKDKREKYIKLL 158 (987)
Q Consensus 97 ~~~~k~-k~L~k--lkg~~i~sVaw~~~~~~---------------~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v 158 (987)
....+. +.+.. -....|.+++|.+.... ..+...++.|+.+|.|....+... +.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-------~~~ 282 (420)
T 3vl1_A 210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK-------EQT 282 (420)
T ss_dssp TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC-------CEE
T ss_pred CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC-------cee
Confidence 654432 22221 12246777777421100 012347888999999988877543 122
Q ss_pred eeeCC-CCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 159 FELNE-LPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 159 ~~l~~-~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
..+.. ...+|+++.|.. ....+++.++....++-|.-
T Consensus 283 ~~~~~~~~~~v~~~~~~~----~~~~~l~~g~~dg~i~vwd~ 320 (420)
T 3vl1_A 283 IQLPSKFTCSCNSLTVDG----NNANYIYAGYENGMLAQWDL 320 (420)
T ss_dssp EEECCTTSSCEEEEEECS----SCTTEEEEEETTSEEEEEET
T ss_pred EEcccccCCCceeEEEeC----CCCCEEEEEeCCCeEEEEEc
Confidence 22321 135799999863 22237777777888888853
No 65
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.11 E-value=0.33 Score=57.13 Aligned_cols=234 Identities=15% Similarity=0.061 Sum_probs=127.9
Q ss_pred HHHHHHHHhhcccc-CCHHHHHHHHHHcCChhHHHHHHHhH--------hhHHHHHHHHHhcccHHHHHHHHhCC----C
Q 001978 495 MREFRAFLSDCKDV-LDEATTMKLLESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----A 561 (987)
Q Consensus 495 ~~~l~~fl~~~~~~-ld~~tv~~ll~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~l~~~----~ 561 (987)
..-|++.+...... .-...+..++...|+.++++.+.+.. .-+..+...|...|++++|++++.+. +
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 404 (597)
T 2xpi_A 325 LAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404 (597)
T ss_dssp HHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 34444444433221 12334555667788888888777643 23456678899999999999988642 2
Q ss_pred CchhhHHhhHHHHHh-HChHHHHHHHHcCCCCCCCcchh--hh-hhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHH
Q 001978 562 VPIDLQYKFAPDLIM-LDAYETVESWMTTNNLNPRKLIP--AM-MRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHN 637 (987)
Q Consensus 562 ~~~~li~k~~~~Ll~-~~p~~ti~~l~~~~~ld~~~lip--~L-~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn 637 (987)
+....+...+..+.. .+++++++.+-+...++|..... .+ ..|... ...+.+..+++..+...+ .++..++
T Consensus 405 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~-~~~~~~~ 479 (597)
T 2xpi_A 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL----GNILLANEYLQSSYALFQ-YDPLLLN 479 (597)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHCC-CCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCC-CChHHHH
Confidence 223445555555543 56777887775432333332111 11 111100 135678888888876544 3678888
Q ss_pred HHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHhcCHHHHHH
Q 001978 638 LLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVDPELAMA 717 (987)
Q Consensus 638 ~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~~di~lA~~ 717 (987)
.+..+|.+.++.++-+.+++..... .++...+++... ..+...+.+|.+.|++++|+..+-+ |.+
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~p~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~ 544 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLL----VKKTQSNEKPWA------ATWANLGHAYRKLKMYDAAIDALNQ-----GLL 544 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----HHHSCCCSGGGH------HHHHHHHHHHHHTTCHHHHHHHHHH-----HHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh----hhccccchhhHH------HHHHHHHHHHHHhcCHHHHHHHHHH-----HHH
Confidence 8888888876555666665543000 000011221100 0112345667788888888876643 111
Q ss_pred HhhccCCCHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHh
Q 001978 718 EADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKE 761 (987)
Q Consensus 718 ~~~~~~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~ 761 (987)
. .+ ++.. .|..++..+... ++..++.+++++
T Consensus 545 ~--~p-~~~~----~~~~l~~~~~~~------g~~~~A~~~~~~ 575 (597)
T 2xpi_A 545 L--ST-NDAN----VHTAIALVYLHK------KIPGLAITHLHE 575 (597)
T ss_dssp H--SS-CCHH----HHHHHHHHHHHT------TCHHHHHHHHHH
T ss_pred h--CC-CChH----HHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 1 12 2333 777777777665 345566655543
No 66
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=97.09 E-value=0.013 Score=69.23 Aligned_cols=150 Identities=9% Similarity=0.053 Sum_probs=103.5
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
...|++++.+. +.++.+..+|+|..+|+....+..+.-+ ...|..+-++|.|..++.++. +|....++..
T Consensus 426 ~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~-----~~~v~~~~~spd~~~las~~~---d~~i~iw~~~ 497 (577)
T 2ymu_A 426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGH-----SSSVRGVAFSPDGQTIASASD---DKTVKLWNRN 497 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECC-----SSCEEEEEECTTSCEEEEEET---TSEEEEEETT
T ss_pred CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCC-----CCCEEEEEEcCCCCEEEEEeC---CCEEEEEcCC
Confidence 45689999974 5888899999999999844434444333 367999999999999888887 8888888764
Q ss_pred CCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeecc
Q 001978 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (987)
....+.+.. ....|++|+|.++ ..-++.|+.+|.|....... +.+.. +.-. .++|+++.|.
T Consensus 498 ~~~~~~~~~-h~~~v~~l~~s~d------g~~l~s~~~dg~v~lwd~~~-----~~~~~-~~~h--~~~v~~~~fs---- 558 (577)
T 2ymu_A 498 GQLLQTLTG-HSSSVRGVAFSPD------GQTIASASDDKTVKLWNRNG-----QLLQT-LTGH--SSSVWGVAFS---- 558 (577)
T ss_dssp SCEEEEEEC-CSSCEEEEEECTT------SSCEEEEETTSEEEEECTTS-----CEEEE-EECC--SSCEEEEEEC----
T ss_pred CCEEEEEeC-CCCCEEEEEEcCC------CCEEEEEECcCEEEEEeCCC-----CEEEE-EcCC--CCCEEEEEEc----
Confidence 433444432 3358999999843 23578889999887765322 12222 2222 3679999985
Q ss_pred CCCceEEEEEECCCeEEEEe
Q 001978 179 SNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~ 198 (987)
.+.++++-++.+..+..|.
T Consensus 559 -~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 559 -PDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -TTSSCEEEEETTSCEEEEC
T ss_pred -CCCCEEEEEeCCCEEEEeC
Confidence 2335677777777787773
No 67
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.07 E-value=0.013 Score=64.09 Aligned_cols=150 Identities=11% Similarity=0.162 Sum_probs=102.2
Q ss_pred CCceeEEEEeC-----CEEEEEecCCeEEEEeC-CCCCc--eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 21 RGVITCMSAGN-----DVIVLGTSKGWLIRHDF-GAGDS--YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 21 ~~~i~~~~v~n-----n~l~~~~~~g~l~ridl-~~~~~--~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
.+.|+|++.+. +.|+.|..+|.|..||+ ..... ..+.-+ ...|..+-..|.|.++++++. +|..
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~~~---dg~v 110 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH-----TGPVLDVCWSDDGSKVFTASC---DKTA 110 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEEC-----SSCEEEEEECTTSSEEEEEET---TSEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccc-----cCCEEEEEECcCCCEEEEEcC---CCcE
Confidence 46799999997 47899999999999999 42333 222222 468999999999999998887 8989
Q ss_pred EEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEE
Q 001978 93 FYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQ 172 (987)
Q Consensus 93 ~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~ 172 (987)
..++....+...+.. ....|.+++|.+. .+...++.|+.+|.|....+...+ ....+..+ ..+..+.
T Consensus 111 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~----~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~---~~~~~~~ 177 (368)
T 3mmy_A 111 KMWDLSSNQAIQIAQ-HDAPVKTIHWIKA----PNYSCVMTGSWDKTLKFWDTRSSN-----PMMVLQLP---ERCYCAD 177 (368)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEEEEC----SSCEEEEEEETTSEEEEECSSCSS-----CSEEEECS---SCEEEEE
T ss_pred EEEEcCCCCceeecc-ccCceEEEEEEeC----CCCCEEEEccCCCcEEEEECCCCc-----EEEEEecC---CCceEEE
Confidence 888877665555443 4568999999421 123368889999999887765431 11223333 3455555
Q ss_pred EEeeccCCCceEEEEEECCCeEEEEe
Q 001978 173 METASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 173 ~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
+.. ..+++++....++.|.
T Consensus 178 ~~~-------~~~~~~~~~~~i~~~~ 196 (368)
T 3mmy_A 178 VIY-------PMAVVATAERGLIVYQ 196 (368)
T ss_dssp EET-------TEEEEEEGGGCEEEEE
T ss_pred ecC-------CeeEEEeCCCcEEEEE
Confidence 541 3566666666666564
No 68
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=97.07 E-value=0.013 Score=67.00 Aligned_cols=157 Identities=10% Similarity=0.024 Sum_probs=100.8
Q ss_pred CCceeEEEEeCC---EEEEEecCCeEEEEeC-CC----------CCceeeEcCCCCCCccceeEEEeCCCCC-eEEEEee
Q 001978 21 RGVITCMSAGND---VIVLGTSKGWLIRHDF-GA----------GDSYDIDLSAGRPGEQSIHKVFVDPGGS-HCIATIV 85 (987)
Q Consensus 21 ~~~i~~~~v~nn---~l~~~~~~g~l~ridl-~~----------~~~~~~~l~~~~~~~~~i~~i~lDp~G~-hlli~~~ 85 (987)
.+.|++++.+.+ +++.|..+|.|..+|+ .. .....+.-+ ...|..+-.+|.|. +++++..
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH-----QKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC-----SSCCCCEEECTTSTTEEEEECT
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC-----CCCeEEEEeCCCCCCeEEEEeC
Confidence 357999999864 7888889999999999 31 112222222 35788999999999 6666665
Q ss_pred cCCCccEEEEecCCCC-----ceeccCC--CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeee
Q 001978 86 GSGGAETFYTHAKWSK-----PRVLSKL--KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLL 158 (987)
Q Consensus 86 ~~~~g~~~Y~~~~~~k-----~k~L~kl--kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v 158 (987)
+|..+.+.....+ ......+ ....|.+|+|++.. ..-|+.|+.+|.|....+...+. .+.+
T Consensus 203 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-----~~~l~s~~~dg~i~i~d~~~~~~----~~~~ 270 (430)
T 2xyi_A 203 ---DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-----ESLFGSVADDQKLMIWDTRNNNT----SKPS 270 (430)
T ss_dssp ---TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-----TTEEEEEETTSEEEEEETTCSCS----SSCS
T ss_pred ---CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-----CCEEEEEeCCCeEEEEECCCCCC----Ccce
Confidence 7888888765421 1112222 23479999999422 23677889999999888764311 1122
Q ss_pred eeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 159 FELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 159 ~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
..+....++|+.|.|.. ....+++.++....+.-|.
T Consensus 271 ~~~~~~~~~v~~i~~~p----~~~~~l~tg~~dg~v~vwd 306 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNP----YSEFILATGSADKTVALWD 306 (430)
T ss_dssp EEEECCSSCEEEEEECS----SCTTEEEEEETTSEEEEEE
T ss_pred eEeecCCCCeEEEEeCC----CCCCEEEEEeCCCeEEEEe
Confidence 22222236799999863 2223566666677777775
No 69
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=97.07 E-value=0.021 Score=61.93 Aligned_cols=133 Identities=9% Similarity=0.105 Sum_probs=91.8
Q ss_pred CCCceeEEEEeCCEEEEEecCCeEEEEeC-C-CCCc-eeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEE
Q 001978 20 GRGVITCMSAGNDVIVLGTSKGWLIRHDF-G-AGDS-YDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 20 ~~~~i~~~~v~nn~l~~~~~~g~l~ridl-~-~~~~-~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~ 95 (987)
.++.|++++.+++.++.|..+|.|..+|+ . +... .....+. ...|..+-.+| .|..+++++. +|....+
T Consensus 149 ~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~l~~~~~---dg~i~i~ 221 (342)
T 1yfq_A 149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL----KYQIRDVALLPKEQEGYACSSI---DGRVAVE 221 (342)
T ss_dssp SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSC----SSCEEEEEECSGGGCEEEEEET---TSEEEEE
T ss_pred eCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCC----CCceeEEEECCCCCCEEEEEec---CCcEEEE
Confidence 34679999999999999999999999999 5 4432 2233321 35789999999 9999888887 7877665
Q ss_pred ecCCC--C--ceeccCCCCc-----------eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeee
Q 001978 96 HAKWS--K--PRVLSKLKGL-----------VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFE 160 (987)
Q Consensus 96 ~~~~~--k--~k~L~klkg~-----------~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~ 160 (987)
..... . .+.+..++++ .|.+++|++. ..-++.|+.+|.|+...+..+ +.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~------~~~l~~~~~dg~i~vwd~~~~-------~~~~~ 288 (342)
T 1yfq_A 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR------HKFLYTAGSDGIISCWNLQTR-------KKIKN 288 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT------TCCEEEEETTSCEEEEETTTT-------EEEEE
T ss_pred EEcCCCcccccccceeeecccccccccccceeEEEEEEcCC------CCEEEEecCCceEEEEcCccH-------hHhhh
Confidence 44332 0 1111222333 8999999942 236899999999998877543 22334
Q ss_pred eCCC-CCceeeEE
Q 001978 161 LNEL-PEAFMGLQ 172 (987)
Q Consensus 161 l~~~-~~~I~gi~ 172 (987)
+..- .++|+++.
T Consensus 289 ~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 289 FAKFNEDSVVKIA 301 (342)
T ss_dssp CCCCSSSEEEEEE
T ss_pred hhcccCCCceEec
Confidence 4433 36788887
No 70
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=97.07 E-value=0.049 Score=58.48 Aligned_cols=164 Identities=11% Similarity=0.115 Sum_probs=104.6
Q ss_pred CCceeEEEEe----CCEEEEEecCCeEEEEeC-CCC--CceeeEcCCCCCCccceeEEEeCCC--CCeEEEEeecCCCcc
Q 001978 21 RGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAG--DSYDIDLSAGRPGEQSIHKVFVDPG--GSHCIATIVGSGGAE 91 (987)
Q Consensus 21 ~~~i~~~~v~----nn~l~~~~~~g~l~ridl-~~~--~~~~~~l~~~~~~~~~i~~i~lDp~--G~hlli~~~~~~~g~ 91 (987)
.+.|.+++.+ ++.|+-|..+|+|..+|+ .+. .+..+..+ ...|..+-..|. |..+++++. +|.
T Consensus 53 ~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h-----~~~v~~v~~~p~~~g~~l~s~s~---d~~ 124 (297)
T 2pm7_B 53 EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVH-----SASVNSVQWAPHEYGPMLLVASS---DGK 124 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCC-----SSCEEEEEECCGGGCSEEEEEET---TSE
T ss_pred cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecC-----CCceeEEEeCcCCCCcEEEEEEC---CCc
Confidence 4569999985 468999999999999999 432 22222222 357899999887 888888877 888
Q ss_pred EEEEecCCCC---ceeccCCCCceEEEEeecCCCCCC-------CCcceEEEEcCCCcEEEEEeccCccccceeeeeeee
Q 001978 92 TFYTHAKWSK---PRVLSKLKGLVVNAVAWNRQQITE-------ASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL 161 (987)
Q Consensus 92 ~~Y~~~~~~k---~k~L~klkg~~i~sVaw~~~~~~~-------~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l 161 (987)
...+...... ...+. -....|.+++|++..... .....++.|+.+|.|....+.... +....+..+
T Consensus 125 v~~wd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~---~~~~~~~~l 200 (297)
T 2pm7_B 125 VSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA---QTYVLESTL 200 (297)
T ss_dssp EEEEEBCSSSCBCCEEEE-CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT---TEEEEEEEE
T ss_pred EEEEEecCCCceeeeeee-cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC---ceEEEEEEe
Confidence 8776654332 22222 133479999999542110 012468889999999888775431 122233345
Q ss_pred CCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 162 NELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 162 ~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
..-.++|.++.|..- ....++++-++....+.-|.
T Consensus 201 ~~H~~~V~~v~~sp~--~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 201 EGHSDWVRDVAWSPT--VLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp CCCSSCEEEEEECCC--CSSSEEEEEEETTSCEEEEE
T ss_pred cCCCCceEEEEECCC--CCCceEEEEEECCCcEEEEE
Confidence 433467999999631 11135777777777777674
No 71
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=97.04 E-value=0.049 Score=59.96 Aligned_cols=155 Identities=9% Similarity=0.039 Sum_probs=105.1
Q ss_pred CceeEEEEeC--CEEEEEecCCeEEEEeCCCCCceee-EcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 22 GVITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSYDI-DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 22 ~~i~~~~v~n--n~l~~~~~~g~l~ridl~~~~~~~~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
+.|++++.+. +.|+.|..+|++..+|++......+ .+. +-...|..+-..|.|..++.++. +|....+...
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~---~h~~~v~~v~~sp~~~~l~s~s~---D~~v~iwd~~ 135 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE---GHENEVKSVAWAPSGNLLATCSR---DKSVWVWEVD 135 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC---CCSSCEEEEEECTTSSEEEEEET---TSCEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc---CCCCCceEEEEeCCCCEEEEEEC---CCeEEEEECC
Confidence 4699999974 5889999999999999943332211 121 11468999999999999988887 8988877754
Q ss_pred CCC-ceeccCCC--CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 99 WSK-PRVLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 99 ~~k-~k~L~klk--g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
..+ ...+..+. ...|.+|+|++. ..-++.|+.+|.|....+... .+..+..+.+-.++|+++.|..
T Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~p~------~~~l~s~s~d~~i~~w~~~~~-----~~~~~~~~~~h~~~v~~l~~sp 204 (345)
T 3fm0_A 136 EEDEYECVSVLNSHTQDVKHVVWHPS------QELLASASYDDTVKLYREEED-----DWVCCATLEGHESTVWSLAFDP 204 (345)
T ss_dssp TTSCEEEEEEECCCCSCEEEEEECSS------SSCEEEEETTSCEEEEEEETT-----EEEEEEEECCCSSCEEEEEECT
T ss_pred CCCCeEEEEEecCcCCCeEEEEECCC------CCEEEEEeCCCcEEEEEecCC-----CEEEEEEecCCCCceEEEEECC
Confidence 432 22222223 347999999943 236888999999888776543 1222334443346799999862
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 001978 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (987)
+.++++.++....+.-|.
T Consensus 205 -----~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 205 -----SGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp -----TSSEEEEEETTSCEEEEE
T ss_pred -----CCCEEEEEeCCCeEEEec
Confidence 336777777777777674
No 72
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.02 E-value=0.036 Score=59.74 Aligned_cols=155 Identities=9% Similarity=0.023 Sum_probs=104.0
Q ss_pred CceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 22 GVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 22 ~~i~~~~v~--nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
..|.+++.+ ++.++.|..+|+|..+|+ .+..+..+.-+ ...|..+-+.|.|.+++.++. +|....++..
T Consensus 56 ~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~sgs~---D~~v~lWd~~ 127 (304)
T 2ynn_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH-----PDYIRSIAVHPTKPYVLSGSD---DLTVKLWNWE 127 (304)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECC-----SSCEEEEEECSSSSEEEEEET---TSCEEEEEGG
T ss_pred CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCC-----CCcEEEEEEcCCCCEEEEECC---CCeEEEEECC
Confidence 456776665 578999999999999999 55555555544 367999999999999988887 8999888765
Q ss_pred CCC-ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 99 WSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 99 ~~k-~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
... ....-+-....|.+|+|++.. ...++.|+.+|.|....+.... . ...+ ... ...+|..+.+...
T Consensus 128 ~~~~~~~~~~~h~~~v~~v~~~p~~-----~~~l~sgs~D~~v~iwd~~~~~---~-~~~~-~~~-~~~~v~~~~~~~~- 195 (304)
T 2ynn_A 128 NNWALEQTFEGHEHFVMCVAFNPKD-----PSTFASGCLDRTVKVWSLGQST---P-NFTL-TTG-QERGVNYVDYYPL- 195 (304)
T ss_dssp GTTEEEEEECCCCSCEEEEEECTTC-----TTEEEEEETTSEEEEEETTCSS---C-SEEE-ECC-CTTCEEEEEECCS-
T ss_pred CCcchhhhhcccCCcEEEEEECCCC-----CCEEEEEeCCCeEEEEECCCCC---c-ccee-ccC-CcCcEEEEEEEEc-
Confidence 432 222111234579999999432 2368889999998887764431 0 1111 111 1245777776532
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 001978 178 LSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (987)
++.++++.++....+.-|.
T Consensus 196 --~~~~~l~s~s~D~~i~iWd 214 (304)
T 2ynn_A 196 --PDKPYMITASDDLTIKIWD 214 (304)
T ss_dssp --TTCCEEEEEETTSEEEEEE
T ss_pred --CCCCEEEEEcCCCeEEEEe
Confidence 2335777777788888775
No 73
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.00 E-value=0.021 Score=64.98 Aligned_cols=148 Identities=9% Similarity=0.075 Sum_probs=100.5
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 21 ~~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
.+.|++++.+++.++.|..+|.|..+|+ .+..+........ ....|..+-. .|.++++++. +|....++...
T Consensus 213 ~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~v~~~~~--~~~~l~s~~~---dg~i~vwd~~~ 285 (435)
T 1p22_A 213 CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG--HRAAVNVVDF--DDKYIVSASG---DRTIKVWNTST 285 (435)
T ss_dssp CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECC--CSSCEEEEEE--ETTEEEEEET---TSEEEEEETTT
T ss_pred CCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecC--CCCcEEEEEe--CCCEEEEEeC---CCeEEEEECCc
Confidence 4568999999999999999999999999 5544422122111 1356776666 5788888877 89888887655
Q ss_pred CCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeecc
Q 001978 100 SKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (987)
Q Consensus 100 ~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (987)
.+. +.+. -....|.+++|+. ..++.|+.+|.|....+..+ +.+..+....++|+++.+.
T Consensus 286 ~~~~~~~~-~~~~~v~~~~~~~--------~~l~~g~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~---- 345 (435)
T 1p22_A 286 CEFVRTLN-GHKRGIACLQYRD--------RLVVSGSSDNTIRLWDIECG-------ACLRVLEGHEELVRCIRFD---- 345 (435)
T ss_dssp CCEEEEEE-CCSSCEEEEEEET--------TEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEECC----
T ss_pred CcEEEEEc-CCCCcEEEEEeCC--------CEEEEEeCCCeEEEEECCCC-------CEEEEEeCCcCcEEEEEec----
Confidence 432 2232 2335799999962 26999999999998877643 2223333334679998873
Q ss_pred CCCceEEEEEECCCeEEEEe
Q 001978 179 SNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~ 198 (987)
+ +.++.++....+.-|.
T Consensus 346 -~--~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 346 -N--KRIVSGAYDGKIKVWD 362 (435)
T ss_dssp -S--SEEEEEETTSCEEEEE
T ss_pred -C--CEEEEEeCCCcEEEEE
Confidence 2 5677777788788775
No 74
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.99 E-value=0.028 Score=64.13 Aligned_cols=146 Identities=10% Similarity=0.087 Sum_probs=101.7
Q ss_pred CCCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 20 GRGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 20 ~~~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
..+.|+|++.+++.++.|..+|.|..+|+ .+..+..+.-+ ...|..+-. .|.++++++. +|....++..
T Consensus 198 h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-----~~~v~~~~~--~~~~l~~~~~---dg~i~iwd~~ 267 (445)
T 2ovr_B 198 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH-----VAAVRCVQY--DGRRVVSGAY---DFMVKVWDPE 267 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECC-----SSCEEEEEE--CSSCEEEEET---TSCEEEEEGG
T ss_pred CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCC-----cccEEEEEE--CCCEEEEEcC---CCEEEEEECC
Confidence 34579999999999999999999999999 54444444433 356777766 5788888887 8988888765
Q ss_pred CCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 99 WSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 99 ~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
..+. +.+. .....|.+++|+. ..++.|+.+|.|....+..+ +.+..+.....++.++.+.
T Consensus 268 ~~~~~~~~~-~~~~~v~~~~~~~--------~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~--- 328 (445)
T 2ovr_B 268 TETCLHTLQ-GHTNRVYSLQFDG--------IHVVSGSLDTSIRVWDVETG-------NCIHTLTGHQSLTSGMELK--- 328 (445)
T ss_dssp GTEEEEEEC-CCSSCEEEEEECS--------SEEEEEETTSCEEEEETTTC-------CEEEEECCCCSCEEEEEEE---
T ss_pred CCcEeEEec-CCCCceEEEEECC--------CEEEEEeCCCeEEEEECCCC-------CEEEEEcCCcccEEEEEEe---
Confidence 5432 2232 1335799999951 26999999999998877543 2223333323568888774
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 001978 178 LSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (987)
+ +.++.++.+..++-|.
T Consensus 329 --~--~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 329 --D--NILVSGNADSTVKIWD 345 (445)
T ss_dssp --T--TEEEEEETTSCEEEEE
T ss_pred --C--CEEEEEeCCCeEEEEE
Confidence 2 4677777777777674
No 75
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.98 E-value=0.022 Score=63.69 Aligned_cols=154 Identities=12% Similarity=0.063 Sum_probs=101.0
Q ss_pred CceeEEEEe---CCEEEEEecCCeEEEEeC-CCCC-ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 22 GVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 22 ~~i~~~~v~---nn~l~~~~~~g~l~ridl-~~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
..|.++++. +++++-|..+|+|..||+ .+.. +..+.-+ ...|..+-+.|.|.+++.++. +|....++
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h-----~~~v~~v~~~p~~~~l~s~s~---D~~i~lwd 277 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH-----EGDINSVKFFPDGQRFGTGSD---DGTCRLFD 277 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC-----SSCCCEEEECTTSSEEEEECS---SSCEEEEE
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc-----CCCeEEEEEecCCCeEEEEcC---CCeEEEEE
Confidence 457888884 478999999999999999 3433 3333323 467999999999999988887 89988887
Q ss_pred cCCCCc-eeccCCC------CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeee-CCCCCce
Q 001978 97 AKWSKP-RVLSKLK------GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL-NELPEAF 168 (987)
Q Consensus 97 ~~~~k~-k~L~klk------g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l-~~~~~~I 168 (987)
....+. +.+..-. ...|++|+|++. ...++.|+.+|.|+...+...+ ....+-.+ ..-.++|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~g~~dg~i~vwd~~~~~----~~~~~~~~~~~h~~~v 347 (380)
T 3iz6_a 278 MRTGHQLQVYNREPDRNDNELPIVTSVAFSIS------GRLLFAGYSNGDCYVWDTLLAE----MVLNLGTLQNSHEGRI 347 (380)
T ss_dssp TTTTEEEEEECCCCSSSCCSSCSCSEEEECSS------SSEEEEECTTSCEEEEETTTCC----EEEEECCSCSSCCCCC
T ss_pred CCCCcEEEEecccccccccccCceEEEEECCC------CCEEEEEECCCCEEEEECCCCc----eEEEEecccCCCCCce
Confidence 655432 2222111 114899999942 3468889999999987664431 12222111 1123679
Q ss_pred eeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 169 MGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 169 ~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
+++.|.. +.++++-++.+..+.-|.
T Consensus 348 ~~l~~s~-----dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 348 SCLGLSS-----DGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp CEEEECS-----SSSEEEEECTTSCEEEEE
T ss_pred EEEEECC-----CCCEEEEeeCCCCEEEEe
Confidence 9999862 335666666666666663
No 76
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.98 E-value=0.029 Score=63.05 Aligned_cols=153 Identities=10% Similarity=-0.003 Sum_probs=102.8
Q ss_pred ceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 23 VITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 23 ~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
.|++++.+. +.++.|..+|+|..||+ ....+..+.-+ ...|..+-..|.|.+++.++. +|....++...
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-----~~~v~~~~~~p~~~~l~s~s~---d~~v~iwd~~~ 196 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH-----EQDIYSLDYFPSGDKLVSGSG---DRTVRIWDLRT 196 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TSEEEEEETTT
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC-----CCCEEEEEEcCCCCEEEEecC---CCcEEEEECCC
Confidence 488999874 58899999999999999 44333333222 467999999999999988887 89998887655
Q ss_pred CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeee----eeCCCCCceeeEEEEe
Q 001978 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF----ELNELPEAFMGLQMET 175 (987)
Q Consensus 100 ~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~----~l~~~~~~I~gi~~~~ 175 (987)
.+...... ....+.+++|.+.. ..-++.|+.+|.|....+..+. .+..+- ....-.++|+++.|..
T Consensus 197 ~~~~~~~~-~~~~v~~~~~~~~~-----~~~l~~~s~d~~v~iwd~~~~~----~~~~~~~~~~~~~~h~~~v~~v~~~~ 266 (393)
T 1erj_A 197 GQCSLTLS-IEDGVTTVAVSPGD-----GKYIAAGSLDRAVRVWDSETGF----LVERLDSENESGTGHKDSVYSVVFTR 266 (393)
T ss_dssp TEEEEEEE-CSSCEEEEEECSTT-----CCEEEEEETTSCEEEEETTTCC----EEEEEC------CCCSSCEEEEEECT
T ss_pred CeeEEEEE-cCCCcEEEEEECCC-----CCEEEEEcCCCcEEEEECCCCc----EEEeecccccCCCCCCCCEEEEEECC
Confidence 44322111 23479999998422 2368889999998887665431 111110 0011135699999862
Q ss_pred eccCCCceEEEEEECCCeEEEEe
Q 001978 176 ASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 176 ~~~~~~~~~~i~ast~~rly~f~ 198 (987)
+.++++.++....+.-|.
T Consensus 267 -----~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 267 -----DGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp -----TSSEEEEEETTSEEEEEE
T ss_pred -----CCCEEEEEeCCCEEEEEE
Confidence 335777777788787775
No 77
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.96 E-value=0.036 Score=61.38 Aligned_cols=157 Identities=9% Similarity=0.005 Sum_probs=101.9
Q ss_pred CceeEEEEeC-CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 22 GVITCMSAGN-DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 22 ~~i~~~~v~n-n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
..|++++.++ +.++.|..+|+|..||+ .+........... +-...|..+-+.|.|.+++.++. +|....++...
T Consensus 83 ~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~-~H~~~V~~v~~spdg~~l~sgs~---d~~i~iwd~~~ 158 (344)
T 4gqb_B 83 AGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKY-EHDDIVSTVSVLSSGTQAVSGSK---DICIKVWDLAQ 158 (344)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEE-CCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTT
T ss_pred CCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeecccc-CCCCCEEEEEECCCCCEEEEEeC---CCeEEEEECCC
Confidence 3588888765 67889999999999999 5544433332211 11468999999999999998887 89988888755
Q ss_pred CCceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 100 SKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 100 ~k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
.+ .+..++| ..|.+++|++.. ..-++-|+.+|.|....+... +...++ ........++++.|..
T Consensus 159 ~~--~~~~~~~h~~~V~~~~~~~~~-----~~~l~s~s~D~~v~iwd~~~~----~~~~~~-~~~~~~~~~~~~~~~p-- 224 (344)
T 4gqb_B 159 QV--VLSSYRAHAAQVTCVAASPHK-----DSVFLSCSEDNRILLWDTRCP----KPASQI-GCSAPGYLPTSLAWHP-- 224 (344)
T ss_dssp TE--EEEEECCCSSCEEEEEECSSC-----TTEEEEEETTSCEEEEETTSS----SCEEEC-C----CCCEEEEEECS--
T ss_pred Cc--EEEEEcCcCCceEEEEecCCC-----CCceeeecccccccccccccc----ceeeee-ecceeeccceeeeecC--
Confidence 43 3333444 489999998432 124667889999987766543 112222 1121124578887752
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 001978 178 LSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (987)
.+.++++.++....++-|.
T Consensus 225 --~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 225 --QQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp --SCTTEEEEEETTSEEEEEE
T ss_pred --CCCcceEEeccCCcEEEEE
Confidence 2235666666677777674
No 78
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.96 E-value=0.021 Score=74.40 Aligned_cols=153 Identities=9% Similarity=0.002 Sum_probs=109.3
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.|+|++.+.+ .++.|..+|+|..||+ ....+..+.-+ ...|..+-++|.|..+++++. +|....++.
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~~~---d~~v~vwd~ 686 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH-----EDEVLCCAFSSDDSYIATCSA---DKKVKIWDS 686 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TSEEEEEET
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccC-----CCCEEEEEEecCCCEEEEEeC---CCeEEEEEC
Confidence 467999999765 7888899999999999 55555555433 468999999999999988887 899988887
Q ss_pred CCCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEee
Q 001978 98 KWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (987)
Q Consensus 98 ~~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~ 176 (987)
...+. +.+. ..+..|.+++|.+.. +..-++.|+.+|.|....+..+ +.+..+..-.++|+++.|..
T Consensus 687 ~~~~~~~~~~-~~~~~v~~~~~~~~~----~~~~l~sg~~d~~v~vwd~~~~-------~~~~~~~~h~~~v~~~~~sp- 753 (1249)
T 3sfz_A 687 ATGKLVHTYD-EHSEQVNCCHFTNKS----NHLLLATGSNDFFLKLWDLNQK-------ECRNTMFGHTNSVNHCRFSP- 753 (1249)
T ss_dssp TTCCEEEEEE-CCSSCEEEEEECSSS----SCCEEEEEETTSCEEEEETTSS-------SEEEEECCCSSCEEEEEECS-
T ss_pred CCCceEEEEc-CCCCcEEEEEEecCC----CceEEEEEeCCCeEEEEECCCc-------chhheecCCCCCEEEEEEec-
Confidence 65543 2232 244589999998431 2235677889999998877653 12223333346799999863
Q ss_pred ccCCCceEEEEEECCCeEEEEe
Q 001978 177 SLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~ 198 (987)
+.+.++.++....+.-|.
T Consensus 754 ----~~~~l~s~s~dg~v~vwd 771 (1249)
T 3sfz_A 754 ----DDELLASCSADGTLRLWD 771 (1249)
T ss_dssp ----STTEEEEEESSSEEEEEE
T ss_pred ----CCCEEEEEECCCeEEEEe
Confidence 335777777777788775
No 79
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=96.92 E-value=0.047 Score=62.16 Aligned_cols=161 Identities=11% Similarity=0.069 Sum_probs=103.6
Q ss_pred CCceeEEEEe---CCEEEEEecCCeEEEEeC-CCC---CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 21 RGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAG---DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 21 ~~~i~~~~v~---nn~l~~~~~~g~l~ridl-~~~---~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
.+.|.+++.+ +++++.+..+|.|..+|+ .+. .+..+..+ ...|+.+-.+|.|.+++++.. .+|...
T Consensus 231 ~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~v~~i~~~p~~~~~l~tg~--~dg~v~ 303 (430)
T 2xyi_A 231 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH-----TAEVNCLSFNPYSEFILATGS--ADKTVA 303 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC-----SSCEEEEEECSSCTTEEEEEE--TTSEEE
T ss_pred CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC-----CCCeEEEEeCCCCCCEEEEEe--CCCeEE
Confidence 3468999995 468889999999999999 542 23333332 367999999999998665543 178887
Q ss_pred EEecCCC--CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccc-------cceeeeeeeeCCC
Q 001978 94 YTHAKWS--KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKR-------EKYIKLLFELNEL 164 (987)
Q Consensus 94 Y~~~~~~--k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~-------e~~~k~v~~l~~~ 164 (987)
.+..... ....+.. ....|.+|+|++.. ..-++.|+.+|.|....+...... +.....++.....
T Consensus 304 vwd~~~~~~~~~~~~~-h~~~v~~i~~sp~~-----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 377 (430)
T 2xyi_A 304 LWDLRNLKLKLHSFES-HKDEIFQVQWSPHN-----ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 377 (430)
T ss_dssp EEETTCTTSCSEEEEC-CSSCEEEEEECSSC-----TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC
T ss_pred EEeCCCCCCCeEEeec-CCCCEEEEEECCCC-----CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC
Confidence 7776542 2333432 34589999999431 124777889999998888652110 0001333444433
Q ss_pred CCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 165 PEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 165 ~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.++|+++.|.. .....++.++....+.-|.
T Consensus 378 ~~~v~~~~~~p----~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 378 TAKISDFSWNP----NEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp SSCEEEEEECS----SSTTEEEEEETTSEEEEEE
T ss_pred CCCceEEEECC----CCCCEEEEEECCCCEEEeE
Confidence 35799999963 2222555556677777674
No 80
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.91 E-value=0.026 Score=64.58 Aligned_cols=147 Identities=12% Similarity=0.116 Sum_probs=101.7
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 21 ~~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
...+.++...++.++.|..+|.|..+|+ ....+..+.-+ ...|..+.++|.|..+++++. +|....++...
T Consensus 270 ~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~sg~~---dg~i~vwd~~~ 341 (464)
T 3v7d_B 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH-----TDRIYSTIYDHERKRCISASM---DTTIRIWDLEN 341 (464)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEEETTTTEEEEEET---TSCEEEEETTT
T ss_pred cceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-----CCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCC
Confidence 3568899999999999999999999999 54444444333 467999999999999998887 89888887654
Q ss_pred CC-ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeecc
Q 001978 100 SK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (987)
Q Consensus 100 ~k-~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (987)
.+ .+.+. -....|.+++|++ ..++.|+.+|.|....+... +..+.... +.++..+.+..
T Consensus 342 ~~~~~~~~-~h~~~v~~~~~~~--------~~l~s~s~dg~v~vwd~~~~-------~~~~~~~~-~~~~~~~~~~~--- 401 (464)
T 3v7d_B 342 GELMYTLQ-GHTALVGLLRLSD--------KFLVSAAADGSIRGWDANDY-------SRKFSYHH-TNLSAITTFYV--- 401 (464)
T ss_dssp TEEEEEEC-CCSSCEEEEEECS--------SEEEEEETTSEEEEEETTTC-------CEEEEEEC-TTCCCEEEEEE---
T ss_pred CcEEEEEe-CCCCcEEEEEEcC--------CEEEEEeCCCcEEEEECCCC-------ceeeeecC-CCCccEEEEEe---
Confidence 43 22232 2345899999982 26899999999888777543 12222322 24466666653
Q ss_pred CCCceEEEEEECCCeEEEEe
Q 001978 179 SNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~ 198 (987)
+.++++..+ ...++-|.
T Consensus 402 --~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 402 --SDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp --CSSEEEEEE-TTEEEEEE
T ss_pred --CCCEEEEec-CCeEEEEE
Confidence 124555544 67788775
No 81
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=96.90 E-value=0.029 Score=66.08 Aligned_cols=150 Identities=8% Similarity=0.038 Sum_probs=104.7
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
...|++++++. +.|+.|..+|.|..+|.+...+..+.-+ ...|..+-+.|.|..+++++. +|....++..
T Consensus 385 ~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~l~~~~~---d~~v~~w~~~ 456 (577)
T 2ymu_A 385 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH-----SSSVWGVAFSPDDQTIASASD---DKTVKLWNRN 456 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECC-----SSCEEEEEECTTSSEEEEEET---TSEEEEEETT
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCC-----CCCeEEEEECCCCCEEEEEcC---CCEEEEEECC
Confidence 35689999975 4788889999999999854444444333 367899999999999988887 8888777765
Q ss_pred CCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeecc
Q 001978 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (987)
....+.+.. ....|++++|.++ ..-++.|+.+|.|....... +.++. +.-. ..+|++|.|.
T Consensus 457 ~~~~~~~~~-~~~~v~~~~~spd------~~~las~~~d~~i~iw~~~~-----~~~~~-~~~h--~~~v~~l~~s---- 517 (577)
T 2ymu_A 457 GQLLQTLTG-HSSSVRGVAFSPD------GQTIASASDDKTVKLWNRNG-----QLLQT-LTGH--SSSVRGVAFS---- 517 (577)
T ss_dssp SCEEEEEEC-CSSCEEEEEECTT------SCEEEEEETTSEEEEEETTS-----CEEEE-EECC--SSCEEEEEEC----
T ss_pred CCEEEEEcC-CCCCEEEEEEcCC------CCEEEEEeCCCEEEEEcCCC-----CEEEE-EeCC--CCCEEEEEEc----
Confidence 444444443 3458999999843 23677889999888765432 12222 2223 3679999985
Q ss_pred CCCceEEEEEECCCeEEEEe
Q 001978 179 SNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~ 198 (987)
.+.++++.++....++-|.
T Consensus 518 -~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 518 -PDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp -TTSSCEEEEETTSEEEEEC
T ss_pred -CCCCEEEEEECcCEEEEEe
Confidence 2336777777777788774
No 82
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.90 E-value=0.021 Score=64.19 Aligned_cols=152 Identities=9% Similarity=0.088 Sum_probs=101.0
Q ss_pred eeEEEEeCCEEEE---EecCCeEEEEeC-CCCCc-eeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEEec
Q 001978 24 ITCMSAGNDVIVL---GTSKGWLIRHDF-GAGDS-YDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 24 i~~~~v~nn~l~~---~~~~g~l~ridl-~~~~~-~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
..+++++.+.+.+ |..+|.|..+|+ ..... ..+..- .+-...|..+-.+| .|..+++++. +|....++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~--~~h~~~V~~~~~~p~~~~~l~s~s~---dg~v~vw~~ 111 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV--CGHTAPVLDIAWCPHNDNVIASGSE---DCTVMVWEI 111 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB--CCCSSCEEEEEECTTCTTEEEEEET---TSEEEEEEC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE--ecCCCCEEEEEeCCCCCCEEEEEeC---CCeEEEEEc
Confidence 3568888888766 456799999999 43322 111111 11246899999999 8888888877 898887776
Q ss_pred CCCC--------ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeee--CCCCCc
Q 001978 98 KWSK--------PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL--NELPEA 167 (987)
Q Consensus 98 ~~~k--------~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l--~~~~~~ 167 (987)
...+ .+.+.. ....|.+|+|++.. ..-++.|+.+|.|....+..+ +.+..+ ...+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~-----~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 112 PDGGLVLPLREPVITLEG-HTKRVGIVAWHPTA-----QNVLLSAGCDNVILVWDVGTG-------AAVLTLGPDVHPDT 178 (402)
T ss_dssp CTTCCSSCBCSCSEEEEC-CSSCEEEEEECSSB-----TTEEEEEETTSCEEEEETTTT-------EEEEEECTTTCCSC
T ss_pred cCCCCccccCCceEEecC-CCCeEEEEEECcCC-----CCEEEEEcCCCEEEEEECCCC-------CccEEEecCCCCCc
Confidence 5432 223321 33589999999431 125788899999998877653 223334 322467
Q ss_pred eeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 168 FMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
|+++.|.. +.+.++.++....++-|.
T Consensus 179 v~~~~~~~-----~~~~l~~~~~d~~i~iwd 204 (402)
T 2aq5_A 179 IYSVDWSR-----DGALICTSCRDKRVRVIE 204 (402)
T ss_dssp EEEEEECT-----TSSCEEEEETTSEEEEEE
T ss_pred eEEEEECC-----CCCEEEEEecCCcEEEEe
Confidence 99999963 235677777788888775
No 83
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.89 E-value=0.9 Score=51.51 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=81.8
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCc
Q 001978 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKP 102 (987)
Q Consensus 24 i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~ 102 (987)
++|++..++.++.|..+|+|..+|+ .+..+..+.-+ ...|..+-..|.| .++.++. +|....++....+.
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-----~~~V~~l~~~~~~-~l~s~s~---dg~i~vwd~~~~~~ 195 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH-----DGGVWALKYAHGG-ILVSGST---DRTVRVWDIKKGCC 195 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEECSTT-EEEEEET---TSCEEEEETTTTEE
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCC-----CcCEEEEEEcCCC-EEEEEeC---CCCEEEEECCCCcE
Confidence 7899999999999999999999999 54444444333 4689999999988 6666665 89988888765432
Q ss_pred e-eccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 103 R-VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 103 k-~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
. .+. -....|.+++|.+.. +...++.|+.+|.|....+...
T Consensus 196 ~~~~~-~h~~~v~~l~~~~~~----~~~~l~s~s~d~~i~vwd~~~~ 237 (464)
T 3v7d_B 196 THVFE-GHNSTVRCLDIVEYK----NIKYIVTGSRDNTLHVWKLPKE 237 (464)
T ss_dssp EEEEC-CCSSCEEEEEEEESS----SCEEEEEEETTSCEEEEECCCC
T ss_pred EEEEC-CCCCccEEEEEecCC----CCCEEEEEcCCCcEEEeeCCCC
Confidence 2 222 234589999998421 2347889999999998877643
No 84
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.89 E-value=0.018 Score=64.00 Aligned_cols=161 Identities=6% Similarity=-0.042 Sum_probs=98.1
Q ss_pred CCCceeEEEEeC-CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 20 GRGVITCMSAGN-DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 20 ~~~~i~~~~v~n-n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
..+.|++++.++ +.++.|..+|+|..||+ .+........... .-...|..+-+.|.|.+++.++. +|....++.
T Consensus 93 ~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~-~h~~~V~~v~~spdg~~l~sgs~---dg~v~iwd~ 168 (357)
T 4g56_B 93 TEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKY-EHDDIVKTLSVFSDGTQAVSGGK---DFSVKVWDL 168 (357)
T ss_dssp CSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEEC-CCSSCEEEEEECSSSSEEEEEET---TSCEEEEET
T ss_pred CCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccC-CCCCCEEEEEECCCCCEEEEEeC---CCeEEEEEC
Confidence 345689999875 56778888999999999 4443221111111 11468999999999999998887 899888877
Q ss_pred CCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 98 ~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
...+....-+.....|.+|+|.+.. ..-++.|+.+|.|....+...+ .... +.......+|+++.|..
T Consensus 169 ~~~~~~~~~~~h~~~v~~v~~s~~~-----~~~~~s~~~dg~v~~wd~~~~~----~~~~-~~~~~~~~~v~~v~~sp-- 236 (357)
T 4g56_B 169 SQKAVLKSYNAHSSEVNCVAACPGK-----DTIFLSCGEDGRILLWDTRKPK----PATR-IDFCASDTIPTSVTWHP-- 236 (357)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTC-----SSCEEEEETTSCEEECCTTSSS----CBCB-CCCTTCCSCEEEEEECT--
T ss_pred CCCcEEEEEcCCCCCEEEEEEccCC-----CceeeeeccCCceEEEECCCCc----eeee-eeeccccccccchhhhh--
Confidence 6554322111233589999998432 2357888999988776554321 1111 22222235688888852
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 001978 178 LSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (987)
....+++.++....++-|.
T Consensus 237 --~~~~~la~g~~d~~i~~wd 255 (357)
T 4g56_B 237 --EKDDTFACGDETGNVSLVN 255 (357)
T ss_dssp --TSTTEEEEEESSSCEEEEE
T ss_pred --cccceEEEeecccceeEEE
Confidence 2234666666667777664
No 85
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.89 E-value=0.08 Score=58.53 Aligned_cols=153 Identities=8% Similarity=0.049 Sum_probs=100.1
Q ss_pred CceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC--CCCeEEEEeecCCCccEEEEe
Q 001978 22 GVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP--GGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 22 ~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp--~G~hlli~~~~~~~g~~~Y~~ 96 (987)
+.|++++.+++ .++.|..+|+|..||+ .+..+..+.-+ ...|..+-+.| .|..++.++. +|....++
T Consensus 155 ~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~~g~~l~sgs~---Dg~v~~wd 226 (354)
T 2pbi_B 155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH-----GADVLCLDLAPSETGNTFVSGGC---DKKAMVWD 226 (354)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-----SSCEEEEEECCCSSCCEEEEEET---TSCEEEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC-----CCCeEEEEEEeCCCCCEEEEEeC---CCeEEEEE
Confidence 45778777654 7888999999999999 55545555444 35677777766 5777877777 89998888
Q ss_pred cCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEee
Q 001978 97 AKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (987)
Q Consensus 97 ~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~ 176 (987)
....+....-+.....|.+|+|++. ...++.|+.+|.|....+... + ...++.......+++.+.|.
T Consensus 227 ~~~~~~~~~~~~h~~~v~~v~~~p~------~~~l~s~s~D~~v~lwd~~~~----~-~~~~~~~~~~~~~~~~~~~s-- 293 (354)
T 2pbi_B 227 MRSGQCVQAFETHESDVNSVRYYPS------GDAFASGSDDATCRLYDLRAD----R-EVAIYSKESIIFGASSVDFS-- 293 (354)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTT----E-EEEEECCTTCCSCEEEEEEC--
T ss_pred CCCCcEEEEecCCCCCeEEEEEeCC------CCEEEEEeCCCeEEEEECCCC----c-EEEEEcCCCcccceeEEEEe--
Confidence 7655432211223458999999943 236889999999988776542 1 11122222212346777764
Q ss_pred ccCCCceEEEEEECCCeEEEEe
Q 001978 177 SLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~ 198 (987)
.+.++++.++....++-|.
T Consensus 294 ---~~g~~l~~g~~d~~i~vwd 312 (354)
T 2pbi_B 294 ---LSGRLLFAGYNDYTINVWD 312 (354)
T ss_dssp ---TTSSEEEEEETTSCEEEEE
T ss_pred ---CCCCEEEEEECCCcEEEEE
Confidence 2235777767777777775
No 86
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.014 Score=72.09 Aligned_cols=162 Identities=10% Similarity=0.105 Sum_probs=107.2
Q ss_pred CCceeEEEEe----CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCC-------------CCeEEE
Q 001978 21 RGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPG-------------GSHCIA 82 (987)
Q Consensus 21 ~~~i~~~~v~----nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~-------------G~hlli 82 (987)
.+.|+|++.+ ++.++.|..+|.|..+|+ .+.......+.. ....|..+..+|. |..+++
T Consensus 99 ~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~---~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~s 175 (753)
T 3jro_A 99 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175 (753)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC---CSSCEEEEEECCCC---------CGGGCCEEE
T ss_pred CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec---CCCceEEEEecCcccccccccccCCCCCEEEE
Confidence 4579999998 459999999999999999 543333333321 1367999999995 888888
Q ss_pred EeecCCCccEEEEecCCCC--ceeccCCC--CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeee
Q 001978 83 TIVGSGGAETFYTHAKWSK--PRVLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLL 158 (987)
Q Consensus 83 ~~~~~~~g~~~Y~~~~~~k--~k~L~klk--g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v 158 (987)
++. +|....++..... ...+..++ ...|++++|++.. ....-++.|+.+|.|....+..+. ......+
T Consensus 176 gs~---dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~~~~l~s~s~Dg~I~iwd~~~~~--~~~~~~~ 247 (753)
T 3jro_A 176 GGA---DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV---LLRSYLASVSQDRTCIIWTQDNEQ--GPWKKTL 247 (753)
T ss_dssp EET---TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC---SSSEEEEEEESSSCEEEEEESSSS--SCCBCCB
T ss_pred EEC---CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCC---CCCCEEEEEecCCEEEEecCCCCC--CcceeEE
Confidence 887 8888777654332 12233233 3579999999531 012468889999999988876542 1112233
Q ss_pred eeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 159 FELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 159 ~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
+.....+++|+++.|.. +.++++.++.+..++-|.
T Consensus 248 ~~~~~~~~~v~~l~~sp-----dg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 248 LKEEKFPDVLWRASWSL-----SGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp SSSSCCSSCCCCEEECT-----TTCCEEEECSSSCEECCB
T ss_pred eccCCCCCceEEEEEcC-----CCCEEEEEcCCCEEEEEe
Confidence 33333346799999962 235666666677777675
No 87
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.82 E-value=0.014 Score=66.77 Aligned_cols=159 Identities=8% Similarity=-0.052 Sum_probs=102.0
Q ss_pred CCceeEEEEe---CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAG---NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~---nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.|+|++.+ .+.|+-|-.+|+|..||+.......+.-.. .....+..+-++|.|.++++.+. +|..+.++.
T Consensus 164 ~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~---dg~i~~wd~ 238 (435)
T 4e54_B 164 GGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSD--TINIWFCSLDVSASSRMVVTGDN---VGNVILLNM 238 (435)
T ss_dssp SCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCS--SCSCCCCCEEEETTTTEEEEECS---SSBEEEEES
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccC--CCCccEEEEEECCCCCEEEEEeC---CCcEeeecc
Confidence 3579999986 468888889999999999433333222221 12345677888999999888887 899988887
Q ss_pred CCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 98 ~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
.......+.. ....|.+|+|++.. ..-++.|+.+|.|....+..... ...+.....-..+|+++.|..
T Consensus 239 ~~~~~~~~~~-h~~~v~~v~~~p~~-----~~~~~s~s~d~~v~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~sp-- 306 (435)
T 4e54_B 239 DGKELWNLRM-HKKKVTHVALNPCC-----DWFLATASVDQTVKIWDLRQVRG----KASFLYSLPHRHPVNAACFSP-- 306 (435)
T ss_dssp SSCBCCCSBC-CSSCEEEEEECTTC-----SSEEEEEETTSBCCEEETTTCCS----SSCCSBCCBCSSCEEECCBCT--
T ss_pred CcceeEEEec-ccceEEeeeecCCC-----ceEEEEecCcceeeEEecccccc----cceEEEeeeccccccceeECC--
Confidence 5543333321 22479999998431 22466788999887776644311 111111211135699888752
Q ss_pred cCCCceEEEEEECCCeEEEEec
Q 001978 178 LSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~g 199 (987)
+.++++.++....++-|.-
T Consensus 307 ---dg~~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 307 ---DGARLLTTDQKSEIRVYSA 325 (435)
T ss_dssp ---TSSEEEEEESSSCEEEEES
T ss_pred ---CCCeeEEEcCCCEEEEEEC
Confidence 3357777777777877753
No 88
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=96.82 E-value=0.16 Score=56.39 Aligned_cols=330 Identities=14% Similarity=0.088 Sum_probs=161.9
Q ss_pred HHHchhhHHHHHHhcCC-----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc--CCC---ChHHHHHHhcCcChHHHH
Q 001978 370 VYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YIL---SFEEITLKFISVSEQDAL 439 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~--~~~---~~E~v~lkFl~~~~~~~L 439 (987)
.++..|+|++|++.++. |. -..+....|..++..|++++|...+.+.. +.. .|-.....+...++.+.-
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 47889999999998753 22 23566678888999999999999887654 111 122233333444554444
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCC-HHHHHHHH
Q 001978 440 RTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLD-EATTMKLL 518 (987)
Q Consensus 440 ~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld-~~tv~~ll 518 (987)
..++..-+..-+..... ...+..+|.. ..+. .+....+++.+....+... ...+-.++
T Consensus 87 ~~~~~~al~~~p~~~~~-----~~~l~~~~~~-~g~~---------------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDG-----YINLAAALVA-AGDM---------------EGAVQAYVSALQYNPDLYCVRSDLGNLL 145 (388)
T ss_dssp HHHHHHHHHHCTTCHHH-----HHHHHHHHHH-HSCS---------------SHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHH-----HHHHHHHHHH-cCCH---------------HHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 44444333322211111 1122223321 1111 1112233333332222111 11233455
Q ss_pred HHcCChhHHHHHHHhH--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHh-HChHHHHHH
Q 001978 519 ESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIM-LDAYETVES 585 (987)
Q Consensus 519 ~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~l~~~----~~~~~li~k~~~~Ll~-~~p~~ti~~ 585 (987)
...|+.++++.+.+.. .-|..+...|...|++++|++.+.+. ++..+.+...+..+.. ...++++..
T Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6678888877765542 23455667788888988888877542 2223444455544443 344455555
Q ss_pred HHcCCCCCCCcchhh--hh-hcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCC
Q 001978 586 WMTTNNLNPRKLIPA--MM-RYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGK 662 (987)
Q Consensus 586 l~~~~~ld~~~lip~--L~-~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~ 662 (987)
+.+.-.++|...... +- .|.. ......++.+++..+...+ ..+..+..+..+|.+.++.++-+.+++..-..
T Consensus 226 ~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 226 YLRALSLSPNHAVVHGNLACVYYE----QGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 443222334321110 00 0000 0134557777777765443 24556666666666654444444444443000
Q ss_pred CCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHhcCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhc
Q 001978 663 GRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIE 742 (987)
Q Consensus 663 ~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~~di~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~ 742 (987)
.+-+.+.. .....+|.+.|++++|+..+-+ |.+ ...++.. .|..++..+..
T Consensus 301 -------~p~~~~~~----------~~l~~~~~~~g~~~~A~~~~~~-----al~---~~p~~~~----~~~~l~~~~~~ 351 (388)
T 1w3b_A 301 -------CPTHADSL----------NNLANIKREQGNIEEAVRLYRK-----ALE---VFPEFAA----AHSNLASVLQQ 351 (388)
T ss_dssp -------CTTCHHHH----------HHHHHHHHTTTCHHHHHHHHHH-----HTT---SCTTCHH----HHHHHHHHHHT
T ss_pred -------CcccHHHH----------HHHHHHHHHcCCHHHHHHHHHH-----HHh---cCCCcHH----HHHHHHHHHHH
Confidence 01111111 1234456677777777765543 100 1111222 67777776665
Q ss_pred cccCCChhhHHHHHHHHHh
Q 001978 743 QEKGTKRENIRKAIAFLKE 761 (987)
Q Consensus 743 ~~~~~~~~~i~~~l~~L~~ 761 (987)
. .+..+++..+++
T Consensus 352 ~------g~~~~A~~~~~~ 364 (388)
T 1w3b_A 352 Q------GKLQEALMHYKE 364 (388)
T ss_dssp T------TCCHHHHHHHHH
T ss_pred c------CCHHHHHHHHHH
Confidence 5 345566665544
No 89
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.82 E-value=0.026 Score=66.76 Aligned_cols=153 Identities=10% Similarity=0.051 Sum_probs=102.4
Q ss_pred CCCc-eeEEEEeC----CEEEEEecCCeEEEEeC-CC--------CCceeeEcCCCCCCccceeEEEeCCCCCeEEEEee
Q 001978 20 GRGV-ITCMSAGN----DVIVLGTSKGWLIRHDF-GA--------GDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIV 85 (987)
Q Consensus 20 ~~~~-i~~~~v~n----n~l~~~~~~g~l~ridl-~~--------~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~ 85 (987)
..+. |+|++.+. +.|+.|..+|.|..||+ .+ .....+..+ ...|..+-++|.|..+++++.
T Consensus 62 h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~ 136 (615)
T 1pgu_A 62 HGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL-----AGPISDISWDFEGRRLCVVGE 136 (615)
T ss_dssp TTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC-----SSCEEEEEECTTSSEEEEEEC
T ss_pred CCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcc-----cccEEEEEEeCCCCEEEEecc
Confidence 3456 99999987 78999999999999999 43 112222222 468999999999999998876
Q ss_pred cCCC----ccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeee
Q 001978 86 GSGG----AETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL 161 (987)
Q Consensus 86 ~~~~----g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l 161 (987)
+ |..+.+. .....+.+.. ....|.+++|++.. ...++.|+.+|.|....+... +.+..+
T Consensus 137 ---~~~~~~~v~~~d-~~~~~~~~~~-~~~~v~~~~~~~~~-----~~~l~~~~~d~~v~vwd~~~~-------~~~~~~ 199 (615)
T 1pgu_A 137 ---GRDNFGVFISWD-SGNSLGEVSG-HSQRINACHLKQSR-----PMRSMTVGDDGSVVFYQGPPF-------KFSASD 199 (615)
T ss_dssp ---CSSCSEEEEETT-TCCEEEECCS-CSSCEEEEEECSSS-----SCEEEEEETTTEEEEEETTTB-------EEEEEE
T ss_pred ---CCCCccEEEEEE-CCCcceeeec-CCccEEEEEECCCC-----CcEEEEEeCCCcEEEEeCCCc-------ceeeee
Confidence 4 4444444 2222333332 34589999999431 125888999999988776442 223334
Q ss_pred CCCCC---ceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 162 NELPE---AFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 162 ~~~~~---~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
..... +|+++.|.. .+.++++.++....++-|.
T Consensus 200 ~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 200 RTHHKQGSFVRDVEFSP----DSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp CSSSCTTCCEEEEEECS----TTCCEEEEEETTCCEEEEE
T ss_pred cccCCCCceEEEEEECC----CCCCEEEEEeCCCeEEEEE
Confidence 32234 799999863 1135777777777888776
No 90
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.81 E-value=0.033 Score=60.21 Aligned_cols=154 Identities=12% Similarity=0.106 Sum_probs=99.6
Q ss_pred CceeEEEEeCC----EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 22 GVITCMSAGND----VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 22 ~~i~~~~v~nn----~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
+.+++++.+.+ +++-+..+|.|..+|+ .+..+..+.-+ ...|..+-++|.|..++.++. +|....+.
T Consensus 172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~s~---Dg~i~iwd 243 (340)
T 4aow_A 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH-----TGYLNTVTVSPDGSLCASGGK---DGQAMLWD 243 (340)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TCEEEEEE
T ss_pred CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC-----CCcEEEEEECCCCCEEEEEeC---CCeEEEEE
Confidence 45777777533 5666778899999999 44333333222 367999999999999888887 89888777
Q ss_pred cCCCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeee---eeeeCCCCCceeeEE
Q 001978 97 AKWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKL---LFELNELPEAFMGLQ 172 (987)
Q Consensus 97 ~~~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~---v~~l~~~~~~I~gi~ 172 (987)
....+. +.+. .+..|.+++|.+. +.++.|+.+|.|....+...... ..++. ......-+.+|+++.
T Consensus 244 ~~~~~~~~~~~--~~~~v~~~~~~~~-------~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~ 313 (340)
T 4aow_A 244 LNEGKHLYTLD--GGDIINALCFSPN-------RYWLCAATGPSIKIWDLEGKIIV-DELKQEVISTSSKAEPPQCTSLA 313 (340)
T ss_dssp TTTTEEEEEEE--CSSCEEEEEECSS-------SSEEEEEETTEEEEEETTTTEEE-EEECCC-------CCCCCEEEEE
T ss_pred eccCceeeeec--CCceEEeeecCCC-------CceeeccCCCEEEEEECCCCeEE-EeccccceeeeccCCCCCEEEEE
Confidence 655432 2232 2357999999842 36999999999888776543100 00000 011112246799998
Q ss_pred EEeeccCCCceEEEEEECCCeEEEEe
Q 001978 173 METASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 173 ~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
|. .+.++++-++.+..++-|.
T Consensus 314 ~s-----~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 314 WS-----ADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EC-----TTSSEEEEEETTSCEEEEE
T ss_pred EC-----CCCCEEEEEeCCCEEEEEe
Confidence 85 2336777777777777774
No 91
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.80 E-value=0.021 Score=64.20 Aligned_cols=146 Identities=7% Similarity=-0.021 Sum_probs=98.4
Q ss_pred EEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCcee
Q 001978 26 CMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRV 104 (987)
Q Consensus 26 ~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~ 104 (987)
++.-.++.|+.|..+|.|..+|+ .......+.. ...+.-.+..|.|..+++++. +|....+.....+...
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKR------ADYTAVDTAKLQMRRFILGTT---EGDIKVLDSNFNLQRE 133 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEETTTTSCS------CCEEEEEEECSSSCEEEEEET---TSCEEEECTTSCEEEE
T ss_pred eeeecCCeEEEEEcCCcEEEEEecccceeeEEec------CCceEEEEEecCCCEEEEEEC---CCCEEEEeCCCcceee
Confidence 45556678899999999999999 3332221111 134455577899999888887 8988888766554444
Q ss_pred ccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceE
Q 001978 105 LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRY 184 (987)
Q Consensus 105 L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~ 184 (987)
.-+-....|++++|++. ...++.|+.+|.|....+.... ..+. +.-. .++|+++.|.. +.+.
T Consensus 134 ~~~~h~~~v~~~~~~~~------~~~l~s~s~d~~i~iwd~~~~~----~~~~-~~~h--~~~v~~~~~~~-----~~~~ 195 (420)
T 3vl1_A 134 IDQAHVSEITKLKFFPS------GEALISSSQDMQLKIWSVKDGS----NPRT-LIGH--RATVTDIAIID-----RGRN 195 (420)
T ss_dssp ETTSSSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCC----CCEE-EECC--SSCEEEEEEET-----TTTE
T ss_pred ecccccCccEEEEECCC------CCEEEEEeCCCeEEEEeCCCCc----CceE-EcCC--CCcEEEEEEcC-----CCCE
Confidence 32234468999999943 2368889999999988776531 1222 2222 36799999963 2357
Q ss_pred EEEEECCCeEEEEe
Q 001978 185 YVMAVTPTRLYSFT 198 (987)
Q Consensus 185 ~i~ast~~rly~f~ 198 (987)
++.++....+.-|.
T Consensus 196 l~s~~~d~~v~iwd 209 (420)
T 3vl1_A 196 VLSASLDGTIRLWE 209 (420)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEEcCCCcEEEeE
Confidence 77777777777775
No 92
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.037 Score=62.70 Aligned_cols=121 Identities=12% Similarity=-0.022 Sum_probs=86.1
Q ss_pred CCCceeEEEEe----CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE
Q 001978 20 GRGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY 94 (987)
Q Consensus 20 ~~~~i~~~~v~----nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y 94 (987)
..+.+++++.. ++.++.|..+|.|..+|+ .+..+..+..+. ....|..+-++|.|.++++++. +|....
T Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~---dg~i~i 240 (437)
T 3gre_A 167 KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP---RHGAVSSICIDEECCVLILGTT---RGIIDI 240 (437)
T ss_dssp SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG---GGCCEEEEEECTTSCEEEEEET---TSCEEE
T ss_pred cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC---CCCceEEEEECCCCCEEEEEcC---CCeEEE
Confidence 34567777744 779999999999999999 655566665531 1368999999999999999888 898888
Q ss_pred EecCCCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 95 THAKWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 95 ~~~~~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
++....+. +.+.--....|.+++|.+.... +..-++.|+.+|.|....+..+
T Consensus 241 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 241 WDIRFNVLIRSWSFGDHAPITHVEVCQFYGK--NSVIVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp EETTTTEEEEEEBCTTCEEEEEEEECTTTCT--TEEEEEEESTTEEEEEEETTTT
T ss_pred EEcCCccEEEEEecCCCCceEEEEeccccCC--CccEEEEEcCCCcEEEEEcCCC
Confidence 87765432 2222112348999999843221 2346777889999988877543
No 93
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.084 Score=57.64 Aligned_cols=162 Identities=9% Similarity=0.027 Sum_probs=102.1
Q ss_pred CceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCc-eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 22 GVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDS-YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 22 ~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~-~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
+.|++++.+. +.|+-|..+|+|..+|+ ..... .-+..... -...|..+-.+|.|.+++.++. +|....+..
T Consensus 108 ~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~---D~~i~iW~~ 182 (330)
T 2hes_X 108 NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE--HSQDVKHVIWHPSEALLASSSY---DDTVRIWKD 182 (330)
T ss_dssp -CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC--CSSCEEEEEECSSSSEEEEEET---TSCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc--CCCceEEEEECCCCCEEEEEcC---CCeEEEEEC
Confidence 4689999974 58888889999999999 44322 21211111 1367999999999999888887 888877664
Q ss_pred CCCCceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCcc-ccceeeeeeeeCC-CCCceeeEEE
Q 001978 98 KWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDK-REKYIKLLFELNE-LPEAFMGLQM 173 (987)
Q Consensus 98 ~~~k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~-~e~~~k~v~~l~~-~~~~I~gi~~ 173 (987)
.....+.+..++| ..|.+++|++.. ....++.|+.+|.|....+..... ....+..+..++. -..+|..+.|
T Consensus 183 ~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 258 (330)
T 2hes_X 183 YDDDWECVAVLNGHEGTVWSSDFDKTE----GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW 258 (330)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCSS----SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEE
T ss_pred CCCCeeEEEEccCCCCcEEEEEecCCC----CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEE
Confidence 3332233333444 479999999532 123577899999988877654311 1111223333432 2357999998
Q ss_pred EeeccCCCceEEEEEECCCeEEEEe
Q 001978 174 ETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
. + + +.++.++....+.-|.
T Consensus 259 s--~--~--~~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 259 G--F--N--GLIASVGADGVLAVYE 277 (330)
T ss_dssp C--T--T--SCEEEEETTSCEEEEE
T ss_pred c--C--C--CEEEEEeCCCEEEEEE
Confidence 5 1 2 3566666666666664
No 94
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.034 Score=63.62 Aligned_cols=155 Identities=7% Similarity=-0.019 Sum_probs=102.9
Q ss_pred ceeEEEEeCC--EE-EEEecCCeEEEEeCC--CCC-ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 23 VITCMSAGND--VI-VLGTSKGWLIRHDFG--AGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 23 ~i~~~~v~nn--~l-~~~~~~g~l~ridl~--~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
.|+|++++.+ .| +.|..+|.|..||+. ... ...+.-+ .....|..+-++|.|.++++++. +|..+.+.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~---~g~v~~~~ 177 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF---CFSKRPNAISIAEDDTTVIIADK---FGDVYSID 177 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE---ECSSCEEEEEECTTSSEEEEEET---TSEEEEEE
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc---cCCCCceEEEEcCCCCEEEEEeC---CCcEEEEe
Confidence 6999999865 54 777788999999994 222 3333211 11357899999999999999887 89998887
Q ss_pred cCCCCce--eccCCC--CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEE
Q 001978 97 AKWSKPR--VLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQ 172 (987)
Q Consensus 97 ~~~~k~k--~L~klk--g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~ 172 (987)
....+.. .+..+. ...|.+|+|++.. ....-++.|+.+|.|+...+..+. .+... +.+-.++|+++.
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~---~~~~~l~s~~~d~~i~vwd~~~~~----~~~~~--~~~h~~~v~~~~ 248 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDS---DGHQFIITSDRDEHIKISHYPQCF----IVDKW--LFGHKHFVSSIC 248 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECT---TSCEEEEEEETTSCEEEEEESCTT----CEEEE--CCCCSSCEEEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCC---CCCcEEEEEcCCCcEEEEECCCCc----eeeee--ecCCCCceEEEE
Confidence 5443322 111222 3479999999431 013368889999999998876431 12221 212236799998
Q ss_pred EEeeccCCCceEEEEEECCCeEEEEe
Q 001978 173 METASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 173 ~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
|. +.++++.++....++-|.
T Consensus 249 ~s------d~~~l~s~~~d~~v~vwd 268 (450)
T 2vdu_B 249 CG------KDYLLLSAGGDDKIFAWD 268 (450)
T ss_dssp EC------STTEEEEEESSSEEEEEE
T ss_pred EC------CCCEEEEEeCCCeEEEEE
Confidence 85 225788777788888775
No 95
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.017 Score=64.75 Aligned_cols=161 Identities=7% Similarity=0.092 Sum_probs=103.0
Q ss_pred CCCceeEEEEe---CCEEEEEecCCeEEEEeC-CCCC-c---eeeEcCCCCCCccceeEEEeCCCC-CeEEEEeecCCCc
Q 001978 20 GRGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGD-S---YDIDLSAGRPGEQSIHKVFVDPGG-SHCIATIVGSGGA 90 (987)
Q Consensus 20 ~~~~i~~~~v~---nn~l~~~~~~g~l~ridl-~~~~-~---~~~~l~~~~~~~~~i~~i~lDp~G-~hlli~~~~~~~g 90 (987)
..+.|++++.+ ++.++.|..+|.|..+|+ .... . ..+.+.........|..+-.+|.| ..+++++. +|
T Consensus 112 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg 188 (416)
T 2pm9_A 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS---SN 188 (416)
T ss_dssp SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS---SS
T ss_pred CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC---CC
Confidence 34579999998 568999999999999999 4431 0 111111111224689999999995 55555555 78
Q ss_pred cEEEEecCCCCceeccCCC------CceEEEEeecCCCCCCCCcceEEEEcCCC---cEEEEEeccCccccceeeeeeee
Q 001978 91 ETFYTHAKWSKPRVLSKLK------GLVVNAVAWNRQQITEASTKEIILGTDTG---QLHEMAVDEKDKREKYIKLLFEL 161 (987)
Q Consensus 91 ~~~Y~~~~~~k~k~L~klk------g~~i~sVaw~~~~~~~~st~~iLiGt~~G---~i~e~~i~~~~~~e~~~k~v~~l 161 (987)
....++....+....-+.. +..|.+++|++.. ..-++.|+.+| .|....+..... ..+ .+
T Consensus 189 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~d~~~~~i~~~d~~~~~~---~~~---~~ 257 (416)
T 2pm9_A 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN-----STRVATATGSDNDPSILIWDLRNANT---PLQ---TL 257 (416)
T ss_dssp CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC-----TTEEEEEECCSSSCCCCEEETTSTTS---CSB---CC
T ss_pred CEEEEECCCCCcceEEeccccccccCCceEEEEECCCC-----CCEEEEEECCCCCceEEEEeCCCCCC---CcE---Ee
Confidence 8888877655432222222 4689999999431 23688888888 888887754311 111 22
Q ss_pred C-CCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 162 N-ELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 162 ~-~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
. ....+|+++.|.. .+.++++.++....++-|.
T Consensus 258 ~~~~~~~v~~~~~s~----~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 258 NQGHQKGILSLDWCH----QDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp CSCCSSCEEEEEECS----SCSSCEEEEESSSEEEEEC
T ss_pred ecCccCceeEEEeCC----CCCCeEEEEeCCCCEEEee
Confidence 2 2236799999862 1335777777788888775
No 96
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.71 E-value=0.12 Score=60.86 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=33.7
Q ss_pred eehhhhccccHHHHHHHHHhcCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHh
Q 001978 690 CVHIYGMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKE 761 (987)
Q Consensus 690 ~v~L~~~~g~~~eAl~l~l~~di~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~ 761 (987)
.+.+|.+.|++++|++++-+ |.+.......+++..-..|..++..+... ++...+++.+++
T Consensus 481 l~~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~p~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~ 541 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQN-----ALLLVKKTQSNEKPWAATWANLGHAYRKL------KMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----HHHHHHHSCCCSGGGHHHHHHHHHHHHHT------TCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHH-----HHHhhhccccchhhHHHHHHHHHHHHHHh------cCHHHHHHHHHH
Confidence 45566777777777776543 22221111112211234788888887765 456777766654
No 97
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.70 E-value=0.052 Score=66.04 Aligned_cols=154 Identities=8% Similarity=-0.013 Sum_probs=105.7
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.|+|++.+. +.++-|..+|+|..||+ ....+..+.-+ ...|..+-++|.|.+++.++. +|....++.
T Consensus 430 ~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~s~---D~~i~iwd~ 501 (694)
T 3dm0_A 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH-----TKDVLSVAFSLDNRQIVSASR---DRTIKLWNT 501 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC-----SSCEEEEEECTTSSCEEEEET---TSCEEEECT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCC-----CCCEEEEEEeCCCCEEEEEeC---CCEEEEEEC
Confidence 35689999875 58888999999999999 54444444444 367999999999999998887 898887775
Q ss_pred CCCCceec-cCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 98 KWSKPRVL-SKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 98 ~~~k~k~L-~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
.......+ ....+ ..|.|++|++.. ....++.|+.+|.|....+... +.+..+..-.++|+++.|.
T Consensus 502 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~~l~s~s~d~~v~vwd~~~~-------~~~~~~~~h~~~v~~v~~s 570 (694)
T 3dm0_A 502 LGECKYTISEGGEGHRDWVSCVRFSPNT----LQPTIVSASWDKTVKVWNLSNC-------KLRSTLAGHTGYVSTVAVS 570 (694)
T ss_dssp TSCEEEEECSSTTSCSSCEEEEEECSCS----SSCEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEEC
T ss_pred CCCcceeeccCCCCCCCcEEEEEEeCCC----CcceEEEEeCCCeEEEEECCCC-------cEEEEEcCCCCCEEEEEEe
Confidence 43322222 22223 369999999432 1235888999999988776543 1222333323679999986
Q ss_pred eeccCCCceEEEEEECCCeEEEEe
Q 001978 175 TASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
. +.++++.++....+.-|.
T Consensus 571 p-----dg~~l~sg~~Dg~i~iwd 589 (694)
T 3dm0_A 571 P-----DGSLCASGGKDGVVLLWD 589 (694)
T ss_dssp T-----TSSEEEEEETTSBCEEEE
T ss_pred C-----CCCEEEEEeCCCeEEEEE
Confidence 2 336777777777777675
No 98
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=96.64 E-value=0.066 Score=58.18 Aligned_cols=160 Identities=9% Similarity=0.145 Sum_probs=103.3
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 21 ~~~i~~~~v~n---n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
.+.|++++.+. ++|+-|..+|+|..||+ ..+......+..-.+-...|..+.+.|.|.+++.++. +|....++
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~---D~~v~~wd 93 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW---DKTLRLWD 93 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET---TSEEEEEE
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC---CCEEEEEE
Confidence 35699999974 68999999999999999 4332211111100111468999999999999998887 89998888
Q ss_pred cCCCCceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 97 AKWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 97 ~~~~k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
....+ .+..+.| ..|.+|+|++. ...++.|+.+|.|....+... .+. .+.+-..+|..+.+.
T Consensus 94 ~~~~~--~~~~~~~h~~~v~~~~~~~~------~~~l~s~s~D~~i~vwd~~~~-----~~~---~~~~h~~~v~~~~~~ 157 (319)
T 3frx_A 94 VATGE--TYQRFVGHKSDVMSVDIDKK------ASMIISGSRDKTIKVWTIKGQ-----CLA---TLLGHNDWVSQVRVV 157 (319)
T ss_dssp TTTTE--EEEEEECCSSCEEEEEECTT------SCEEEEEETTSCEEEEETTSC-----EEE---EECCCSSCEEEEEEC
T ss_pred CCCCC--eeEEEccCCCcEEEEEEcCC------CCEEEEEeCCCeEEEEECCCC-----eEE---EEeccCCcEEEEEEc
Confidence 65543 2223333 47999999943 236888999999888766432 122 233223568888875
Q ss_pred eecc-CCCceEEEEEECCCeEEEEec
Q 001978 175 TASL-SNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 175 ~~~~-~~~~~~~i~ast~~rly~f~g 199 (987)
.... ..+...++-++....+..|.-
T Consensus 158 ~~~~~~~~~~~l~s~~~d~~i~~wd~ 183 (319)
T 3frx_A 158 PNEKADDDSVTIISAGNDKMVKAWNL 183 (319)
T ss_dssp CC------CCEEEEEETTSCEEEEET
T ss_pred cCCCCCCCccEEEEEeCCCEEEEEEC
Confidence 3211 012235666666777777753
No 99
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.026 Score=64.06 Aligned_cols=162 Identities=6% Similarity=0.062 Sum_probs=103.5
Q ss_pred CCceeEEEEeC---CEEEEEecCCeEEEEeC-C---CCCce-eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 21 RGVITCMSAGN---DVIVLGTSKGWLIRHDF-G---AGDSY-DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 21 ~~~i~~~~v~n---n~l~~~~~~g~l~ridl-~---~~~~~-~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
.+.|+|++.+. +.|+.|..+|+|..||+ . ..... ..... -...|..+-..|.|..+++++. +|..
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~s~---dg~i 135 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD----CSSTVTQITMIPNFDAFAVSSK---DGQI 135 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE----CSSCEEEEEECTTSSEEEEEET---TSEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc----CCCCEEEEEEeCCCCEEEEEeC---CCEE
Confidence 36799999988 58999999999999999 4 22111 11211 1368999999999999998888 8888
Q ss_pred EEEecCCC-CceeccCCCCceEEEEeecCCC--C--------CCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeee
Q 001978 93 FYTHAKWS-KPRVLSKLKGLVVNAVAWNRQQ--I--------TEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL 161 (987)
Q Consensus 93 ~Y~~~~~~-k~k~L~klkg~~i~sVaw~~~~--~--------~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l 161 (987)
..+..... ..+.+..+++..|.++.|++.. . ...+...++.|+.+|.|....+... +.+.. +..
T Consensus 136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~-~~~ 210 (437)
T 3gre_A 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL----ERLQI-IEN 210 (437)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC----CEEEE-EEC
T ss_pred EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----eeeEE-Ecc
Confidence 77755211 1112222345577777766310 0 0012457888999999988877543 11222 222
Q ss_pred CCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 162 NELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 162 ~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
+...++|+++.|.. +.++++.++....+.-|.-
T Consensus 211 ~~h~~~v~~~~~s~-----~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 211 SPRHGAVSSICIDE-----ECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp CGGGCCEEEEEECT-----TSCEEEEEETTSCEEEEET
T ss_pred CCCCCceEEEEECC-----CCCEEEEEcCCCeEEEEEc
Confidence 10125799999852 3467777777877887753
No 100
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.079 Score=60.55 Aligned_cols=113 Identities=7% Similarity=-0.028 Sum_probs=80.8
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCce----eeEcCCCCCCccceeEEEeCCC---CCeEEEEeecCCCc
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSY----DIDLSAGRPGEQSIHKVFVDPG---GSHCIATIVGSGGA 90 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~----~~~l~~~~~~~~~i~~i~lDp~---G~hlli~~~~~~~g 90 (987)
+..|++++.+. +.|+.|..+|.|+.+|+ .+.... .+.-+ ...|+.+-.+|. |.+++.++. +|
T Consensus 149 ~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~sp~~~~~~~l~s~~~---d~ 220 (450)
T 2vdu_B 149 SKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH-----VSMLTDVHLIKDSDGHQFIITSDR---DE 220 (450)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC-----SSCEEEEEEEECTTSCEEEEEEET---TS
T ss_pred CCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecc-----cCceEEEEEcCCCCCCcEEEEEcC---CC
Confidence 35689999974 58999999999999999 544332 22222 367999999999 888888777 88
Q ss_pred cEEEEecCCCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 91 ETFYTHAKWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 91 ~~~Y~~~~~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
..+.++....+. +.+..-....|.+++|+ + ..-++.|+.+|.|....+..+
T Consensus 221 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d------~~~l~s~~~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 221 HIKISHYPQCFIVDKWLFGHKHFVSSICCG-K------DYLLLSAGGDDKIFAWDWKTG 272 (450)
T ss_dssp CEEEEEESCTTCEEEECCCCSSCEEEEEEC-S------TTEEEEEESSSEEEEEETTTC
T ss_pred cEEEEECCCCceeeeeecCCCCceEEEEEC-C------CCEEEEEeCCCeEEEEECCCC
Confidence 888777655443 22121133589999997 2 236888999999988877654
No 101
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.04 Score=69.49 Aligned_cols=154 Identities=9% Similarity=0.049 Sum_probs=105.7
Q ss_pred CCceeEEEEeCC-EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 21 RGVITCMSAGND-VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 21 ~~~i~~~~v~nn-~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
.+.|++++.+.+ .|+-|..+|+|..||+ .+..+..+.. ...|..+-++|.|.++++.+. +|....++..
T Consensus 58 ~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~~------~~~V~~v~~sp~g~~l~sgs~---dg~V~lwd~~ 128 (902)
T 2oaj_A 58 RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFV------PGKITSIDTDASLDWMLIGLQ---NGSMIVYDID 128 (902)
T ss_dssp CCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEEC------SSCEEEEECCTTCSEEEEEET---TSCEEEEETT
T ss_pred CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEcC------CCCEEEEEECCCCCEEEEEcC---CCcEEEEECC
Confidence 456999998855 5888889999999999 5554555542 257999999999999999988 8999888765
Q ss_pred CCCcee--c-------cCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeC---C-
Q 001978 99 WSKPRV--L-------SKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELN---E- 163 (987)
Q Consensus 99 ~~k~k~--L-------~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~---~- 163 (987)
..+... + ..+++ ..|.+|+|++. +.+.+++|+.+|.| ...+..+ +..+. +... +
T Consensus 129 ~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~-----~~~~l~~g~~dg~v-lWd~~~~----~~~~~-~~~~~~~g~ 197 (902)
T 2oaj_A 129 RDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR-----DIGTVLISYEYVTL-TYSLVEN----EIKQS-FIYELPPFA 197 (902)
T ss_dssp TTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT-----EEEEEEEECSSCEE-EEETTTT----EEEEE-ECCCBCTTC
T ss_pred CCccccceeccccccccccccCCCCeEEEEEccC-----CCCEEEEEeCCCcE-EEECCCC----ceEEE-EecccCCcC
Confidence 543211 1 11233 47999999943 23479999999988 6655443 11222 2211 0
Q ss_pred ------------CCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 164 ------------LPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 164 ------------~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
...+|+++.|.. +.++++.++.+..+.-|..
T Consensus 198 ~~~~~~~~~~~~h~~~V~~v~fsp-----dg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 198 PGGDFSEKTNEKRTPKVIQSLYHP-----NSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp CCSTTCCCTTSCBCCCEEEEEECT-----TSSEEEEEETTCCEEEEET
T ss_pred CCcccccccccccCCCeEEEEEcC-----CCCEEEEEECCCeEEEEEC
Confidence 014599999862 2367888788888888864
No 102
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.57 E-value=0.073 Score=57.95 Aligned_cols=147 Identities=12% Similarity=0.089 Sum_probs=91.6
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC-CCCC-ceeeEcCCCCCCccceeEEEeCCCCCe--EEEEeecCCCccEEEEe
Q 001978 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF-GAGD-SYDIDLSAGRPGEQSIHKVFVDPGGSH--CIATIVGSGGAETFYTH 96 (987)
Q Consensus 21 ~~~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~h--lli~~~~~~~g~~~Y~~ 96 (987)
+..+.++....+.++++..+|.+..+|+ .... ...+..+ ......+..++.++.... +++++. +|....+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---dg~i~i~~ 244 (368)
T 3mmy_A 170 PERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESP--LKHQHRCVAIFKDKQNKPTGFALGSI---EGRVAIHY 244 (368)
T ss_dssp SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCS--CSSCEEEEEEEECTTSCEEEEEEEET---TSEEEEEE
T ss_pred CCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhcccc--ccCCCceEEEcccCCCCCCeEEEecC---CCcEEEEe
Confidence 3468889999999999999999999999 3322 2222222 111234445555544322 666666 78776666
Q ss_pred cCCCCc-eeccCCCCc--------------eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeee
Q 001978 97 AKWSKP-RVLSKLKGL--------------VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL 161 (987)
Q Consensus 97 ~~~~k~-k~L~klkg~--------------~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l 161 (987)
...... +.+..++++ .|++++|++. ..-++.|+.+|.|....+... +.+..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~s~~~dg~i~iwd~~~~-------~~~~~~ 311 (368)
T 3mmy_A 245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV------HGTLATVGSDGRFSFWDKDAR-------TKLKTS 311 (368)
T ss_dssp SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTT------TCCEEEEETTSCEEEEETTTT-------EEEEEC
T ss_pred cCCCCccccceeeeeeecccccccccccccceEEEEEecC------CCEEEEEccCCeEEEEECCCC-------cEEEEe
Confidence 544422 233333444 4999999943 236889999999998877643 223334
Q ss_pred CCCCCceeeEEEEeeccCCCceEEEEEEC
Q 001978 162 NELPEAFMGLQMETASLSNGTRYYVMAVT 190 (987)
Q Consensus 162 ~~~~~~I~gi~~~~~~~~~~~~~~i~ast 190 (987)
..-.++|+++.|.. +.++++.++.
T Consensus 312 ~~~~~~v~~~~~s~-----~g~~l~~~s~ 335 (368)
T 3mmy_A 312 EQLDQPISACCFNH-----NGNIFAYASS 335 (368)
T ss_dssp CCCSSCEEEEEECT-----TSSCEEEEEC
T ss_pred cCCCCCceEEEECC-----CCCeEEEEec
Confidence 43346799999862 3356666655
No 103
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=96.53 E-value=0.11 Score=56.88 Aligned_cols=163 Identities=9% Similarity=0.041 Sum_probs=103.1
Q ss_pred CCceeEEEE--------eCCEEEEEecCCeEEEEeC-CCCCceeeEcCC--CCCCccceeEEEeCCCCCeEEEEeecCCC
Q 001978 21 RGVITCMSA--------GNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSA--GRPGEQSIHKVFVDPGGSHCIATIVGSGG 89 (987)
Q Consensus 21 ~~~i~~~~v--------~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~--~~~~~~~i~~i~lDp~G~hlli~~~~~~~ 89 (987)
.+.|+++++ .++.|+-|..+|+|..||+ .++.......+. ..+-...|..+-++|.|..++.++. +
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~---D 97 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW---D 97 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET---T
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC---C
Confidence 456999998 4568999999999999999 433211111110 0112467999999999999888877 8
Q ss_pred ccEEEEecCCCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCce
Q 001978 90 AETFYTHAKWSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAF 168 (987)
Q Consensus 90 g~~~Y~~~~~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I 168 (987)
|....++....+. +.+.. ....|.+|+|+++ ...++.|+.+|.|....+... .............+|
T Consensus 98 ~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~------~~~l~s~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 98 KTLRLWDLRTGTTYKRFVG-HQSEVYSVAFSPD------NRQILSAGAEREIKLWNILGE-----CKFSSAEKENHSDWV 165 (343)
T ss_dssp SEEEEEETTSSCEEEEEEC-CCSCEEEEEECSS------TTEEEEEETTSCEEEEESSSC-----EEEECCTTTSCSSCE
T ss_pred CcEEEEECCCCcEEEEEcC-CCCcEEEEEECCC------CCEEEEEcCCCEEEEEeccCC-----ceeeeecccCCCcee
Confidence 9988888655432 22221 2348999999943 236888999999988876532 011111111223568
Q ss_pred eeEEEEeeccC-----CCceEEEEEECCCeEEEEe
Q 001978 169 MGLQMETASLS-----NGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 169 ~gi~~~~~~~~-----~~~~~~i~ast~~rly~f~ 198 (987)
..+.|...... ....+++.++....+.-|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 200 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEc
Confidence 88888642100 0114667667788888776
No 104
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.46 E-value=0.19 Score=53.71 Aligned_cols=162 Identities=10% Similarity=0.113 Sum_probs=100.1
Q ss_pred CCceeEEEEeC----CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCC-------------CCeEEE
Q 001978 21 RGVITCMSAGN----DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPG-------------GSHCIA 82 (987)
Q Consensus 21 ~~~i~~~~v~n----n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~-------------G~hlli 82 (987)
...|.+++.+. +.++.|..+|+|..+|+ .+.......+. .-...|..+-..|. |..++.
T Consensus 99 ~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~---~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~s 175 (297)
T 2pm7_B 99 SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID---AHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE---CCSSCEEEEEECCCC------------CCEEEE
T ss_pred CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee---cccCccceEeecCCcccccccCCCCCCcceEEE
Confidence 34689999974 58999999999999999 44322111111 11356888888886 456666
Q ss_pred EeecCCCccEEEEecCCCC--ceeccCCCCc--eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeee
Q 001978 83 TIVGSGGAETFYTHAKWSK--PRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLL 158 (987)
Q Consensus 83 ~~~~~~~g~~~Y~~~~~~k--~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v 158 (987)
++. +|....+.....+ ...+..++|+ .|.+|+|++.. ....-++.|+.+|.|....+..... ...+.+
T Consensus 176 gs~---D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~---~~~~~las~s~D~~v~iWd~~~~~~--~~~~~~ 247 (297)
T 2pm7_B 176 GGA---DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV---LLRSYMASVSQDRTCIIWTQDNEQG--PWKKTL 247 (297)
T ss_dssp EET---TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC---SSSEEEEEEETTSCEEEEEESSTTS--CCEEEE
T ss_pred EcC---CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCC---CCceEEEEEECCCcEEEEEeCCCCC--ccceee
Confidence 666 7887766654332 1233344554 69999999532 1123577889999998877754311 111222
Q ss_pred eeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 159 FELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 159 ~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
+....-+++|.++.|.. +.++++.++....+.-|.
T Consensus 248 ~~~~~~~~~v~~~~~s~-----~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 248 LKEEKFPDVLWRASWSL-----SGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp SSSSCCSSCEEEEEECS-----SSCCEEEEETTSCEEEEE
T ss_pred eecccCCCcEEEEEECC-----CCCEEEEEcCCCcEEEEE
Confidence 22122246799998863 235677777777777664
No 105
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.39 E-value=0.22 Score=53.78 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=39.6
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+.+.+.. .....+....|..++..|+|++|...|.+..
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 64 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 64 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 478899999999987631 1234678889999999999999999998875
No 106
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.39 E-value=1.3 Score=47.55 Aligned_cols=150 Identities=13% Similarity=0.042 Sum_probs=91.8
Q ss_pred ceeEEEEeC--CEEEEEec-------CCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 23 VITCMSAGN--DVIVLGTS-------KGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 23 ~i~~~~v~n--n~l~~~~~-------~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
.+.+++++. +.++++.. +|.|+++|+ ....+..++.+ ..+..+-++|.|.+++++.. +++..
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~v~~~--~~~~v 113 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND------LKPFGATINNTTQTLWFGNT--VNSAV 113 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES------SCCCSEEEETTTTEEEEEET--TTTEE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC------CCcceEEECCCCCEEEEEec--CCCEE
Confidence 356777776 47888774 568999999 55555666654 24577889999999888765 24666
Q ss_pred EEEecCCCCc-eeccCCC-C--------ceEEEEeecCCCCCCCCcceEEEEc--CCCcEEEEEeccCccccceeeeeee
Q 001978 93 FYTHAKWSKP-RVLSKLK-G--------LVVNAVAWNRQQITEASTKEIILGT--DTGQLHEMAVDEKDKREKYIKLLFE 160 (987)
Q Consensus 93 ~Y~~~~~~k~-k~L~klk-g--------~~i~sVaw~~~~~~~~st~~iLiGt--~~G~i~e~~i~~~~~~e~~~k~v~~ 160 (987)
+.++....+. +.+. .. + ..+.+++|+++ .+.+++++ .+|.|+...+... +.+..
T Consensus 114 ~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~d------g~~l~~~~~~~~~~i~~~d~~~~-------~~~~~ 179 (353)
T 3vgz_A 114 TAIDAKTGEVKGRLV-LDDRKRTEEVRPLQPRELVADDA------TNTVYISGIGKESVIWVVDGGNI-------KLKTA 179 (353)
T ss_dssp EEEETTTCCEEEEEE-SCCCCCCSSCCCCEEEEEEEETT------TTEEEEEEESSSCEEEEEETTTT-------EEEEE
T ss_pred EEEeCCCCeeEEEEe-cCCCccccccCCCCCceEEECCC------CCEEEEEecCCCceEEEEcCCCC-------ceEEE
Confidence 6666655443 2222 21 1 13789999843 22466665 4688888766543 12222
Q ss_pred eCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 161 LNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 161 l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
++.....+.++.|.. +.+.+++++....++.|..
T Consensus 180 ~~~~~~~~~~~~~s~-----dg~~l~~~~~~~~i~~~d~ 213 (353)
T 3vgz_A 180 IQNTGKMSTGLALDS-----EGKRLYTTNADGELITIDT 213 (353)
T ss_dssp ECCCCTTCCCCEEET-----TTTEEEEECTTSEEEEEET
T ss_pred ecCCCCccceEEECC-----CCCEEEEEcCCCeEEEEEC
Confidence 331113367888752 2245666555777886653
No 107
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.41 Score=54.73 Aligned_cols=49 Identities=14% Similarity=0.191 Sum_probs=35.2
Q ss_pred HHHchhhHHHHHHhcCCch---hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL---QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~---~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+++.|+|++|+...+... .-...+...|..++..|+|++|.+.|.+..
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al 66 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKAL 66 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHh
Confidence 4777888888888765211 024567777888888888888888887764
No 108
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.33 E-value=1.1 Score=50.05 Aligned_cols=154 Identities=6% Similarity=-0.055 Sum_probs=90.4
Q ss_pred CceeEEEEeC-CEEEE-EecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 22 GVITCMSAGN-DVIVL-GTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 22 ~~i~~~~v~n-n~l~~-~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
+.+.+++++. +.+++ +..+|.|.++|+ ....+..+..+........|..+.++|.|..++.++. +|..+.+...
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---d~~v~~~d~~ 199 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ---ANAVHVFDLK 199 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG---GTEEEEEETT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC---CCEEEEEECC
Confidence 3456777763 44444 445678999999 4443332222111112357888888998887666665 7888777765
Q ss_pred CCCc-eeccCCCCceEEEEeecCCCCCCCCcceEE-EEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEee
Q 001978 99 WSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEII-LGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (987)
Q Consensus 99 ~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iL-iGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~ 176 (987)
..+. +.+. ..+..+.+++|++. ...++ .|..+|.|+...+..+ +.+..++. .+.+.++.|..
T Consensus 200 ~~~~~~~~~-~~~~~~~~~~~~~~------~~~l~~~~~~~~~i~~~d~~~~-------~~~~~~~~-~~~~~~~~~~~- 263 (433)
T 3bws_A 200 TLAYKATVD-LTGKWSKILLYDPI------RDLVYCSNWISEDISVIDRKTK-------LEIRKTDK-IGLPRGLLLSK- 263 (433)
T ss_dssp TCCEEEEEE-CSSSSEEEEEEETT------TTEEEEEETTTTEEEEEETTTT-------EEEEECCC-CSEEEEEEECT-
T ss_pred CceEEEEEc-CCCCCeeEEEEcCC------CCEEEEEecCCCcEEEEECCCC-------cEEEEecC-CCCceEEEEcC-
Confidence 5433 2232 34668999999943 12453 4457898888776543 12223332 24578888752
Q ss_pred ccCCCceEEEEEE--------CCCeEEEEe
Q 001978 177 SLSNGTRYYVMAV--------TPTRLYSFT 198 (987)
Q Consensus 177 ~~~~~~~~~i~as--------t~~rly~f~ 198 (987)
+.+.+++++ +...++.|.
T Consensus 264 ----~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 264 ----DGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp ----TSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred ----CCCEEEEEECCCCccccCCCeEEEEE
Confidence 224566655 245677665
No 109
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.33 E-value=0.05 Score=58.22 Aligned_cols=78 Identities=13% Similarity=-0.115 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehh
Q 001978 614 THEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHI 693 (987)
Q Consensus 614 ~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L 693 (987)
...++.+++..+...+. +..++..+-..|...++.++.+.+++..- ..+++.+-- +-....+
T Consensus 20 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al----------~~~p~~~~~-------~~~lg~~ 81 (281)
T 2c2l_A 20 YPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRAL----------ELDGQSVKA-------HFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHT----------TSCTTCHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHH----------HhCCCCHHH-------HHHHHHH
Confidence 45688888888776543 55666666666766655566777777651 112211111 1123456
Q ss_pred hhccccHHHHHHHHHh
Q 001978 694 YGMMSMHEEAVALALQ 709 (987)
Q Consensus 694 ~~~~g~~~eAl~l~l~ 709 (987)
|..+|++++|+..+..
T Consensus 82 ~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 82 QLEMESYDEAIANLQR 97 (281)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 7899999999987654
No 110
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.32 E-value=0.0048 Score=58.99 Aligned_cols=33 Identities=18% Similarity=0.601 Sum_probs=25.9
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
..-.|.+|...+.. | ++.||||.||..|+....
T Consensus 52 ~~~~C~iC~~~~~~------------------~-~~~~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 52 NELQCIICSEYFIE------------------A-VTLNCAHSFCSYCINEWM 84 (138)
T ss_dssp HHSBCTTTCSBCSS------------------E-EEETTSCEEEHHHHHHHT
T ss_pred ccCCCcccCcccCC------------------c-eECCCCCCccHHHHHHHH
Confidence 34579999877644 3 567999999999998764
No 111
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=96.21 E-value=0.089 Score=59.43 Aligned_cols=118 Identities=15% Similarity=0.098 Sum_probs=78.1
Q ss_pred CCCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCC----ceeeEcCCCCCC-------ccceeEEEeCCCCCeEEEEe
Q 001978 20 GRGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGD----SYDIDLSAGRPG-------EQSIHKVFVDPGGSHCIATI 84 (987)
Q Consensus 20 ~~~~i~~~~v~n---n~l~~~~~~g~l~ridl-~~~~----~~~~~l~~~~~~-------~~~i~~i~lDp~G~hlli~~ 84 (987)
..+.|++++.+. +.++.|..+|.|..+|+ .+.. +..+..+..... ...|..+-++|.|.+++.++
T Consensus 225 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 304 (447)
T 3dw8_B 225 LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD 304 (447)
T ss_dssp CCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred cCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee
Confidence 345699999986 68999999999999999 5443 333333311000 02799999999999887665
Q ss_pred ecCCCccEEEEecCCCCceeccCCCCce-----------------EEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 85 VGSGGAETFYTHAKWSKPRVLSKLKGLV-----------------VNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 85 ~~~~~g~~~Y~~~~~~k~k~L~klkg~~-----------------i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
. |....++.... .+.+..++++. +.+++|++. ...++.|+.+|.|+...+..
T Consensus 305 ~----~~v~iwd~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~------~~~l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 305 Y----LSVKVWDLNME-NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGS------DSVVMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp S----SEEEEEETTCC-SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTT------SSEEEEECSTTEEEEEETTT
T ss_pred C----CeEEEEeCCCC-ccccceeeccccccccccccccccccccceEEEECCC------CCEEEEeccCCEEEEEEcCC
Confidence 4 77777766531 12333334332 345899843 23688899999999887754
Q ss_pred C
Q 001978 148 K 148 (987)
Q Consensus 148 ~ 148 (987)
+
T Consensus 374 ~ 374 (447)
T 3dw8_B 374 K 374 (447)
T ss_dssp C
T ss_pred C
Confidence 3
No 112
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=96.21 E-value=0.082 Score=59.72 Aligned_cols=161 Identities=10% Similarity=0.154 Sum_probs=99.4
Q ss_pred CceeEEEEeC--CEEEEEecCCeEEEEeC-CCCC-----------ceeeEcCCCC-------CCccceeEEEeCCCC--C
Q 001978 22 GVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGD-----------SYDIDLSAGR-------PGEQSIHKVFVDPGG--S 78 (987)
Q Consensus 22 ~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~-----------~~~~~l~~~~-------~~~~~i~~i~lDp~G--~ 78 (987)
+.|+|++.+. +.|+.|..+|.|..+|+ .+.. ...+.-+... .....|..+-..|.| .
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence 6799999986 48999999999999999 4331 2222222100 001679999999998 7
Q ss_pred eEEEEeecCCCccEEEEecCCCCc----------------------------------------eeccCCCCceEEEEee
Q 001978 79 HCIATIVGSGGAETFYTHAKWSKP----------------------------------------RVLSKLKGLVVNAVAW 118 (987)
Q Consensus 79 hlli~~~~~~~g~~~Y~~~~~~k~----------------------------------------k~L~klkg~~i~sVaw 118 (987)
++++++. +|....+.....+. +.+..-....|.+++|
T Consensus 109 ~l~s~s~---d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 109 QFLLSTN---DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp EEEEEEC---SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred eEEEeCC---CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 8888877 88887766433111 0111123457999999
Q ss_pred cCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeee----eeCCCCCceeeEEEEeeccCCCceEEEEEECCCeE
Q 001978 119 NRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF----ELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRL 194 (987)
Q Consensus 119 ~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~----~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rl 194 (987)
++. ...++.| .+|.|....+... .+.++.+- .+..-.++|+++.|.. ...+.++.++....+
T Consensus 186 ~~~------~~~l~s~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p----~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 186 NSD------YETYLSA-DDLRINLWHLEIT---DRSFNIVDIKPANMEELTEVITAAEFHP----NSCNTFVYSSSKGTI 251 (447)
T ss_dssp CTT------SSEEEEE-CSSEEEEEETTEE---EEEEEEEECCCSSGGGCCCCEEEEEECS----SCTTEEEEEETTSCE
T ss_pred cCC------CCEEEEe-CCCeEEEEECCCC---CceeeeeecccccccccCcceEEEEECC----CCCcEEEEEeCCCeE
Confidence 942 1256666 8999988877632 11222110 1222235699999863 112577777778878
Q ss_pred EEEec
Q 001978 195 YSFTG 199 (987)
Q Consensus 195 y~f~g 199 (987)
.-|.-
T Consensus 252 ~iwd~ 256 (447)
T 3dw8_B 252 RLCDM 256 (447)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 87753
No 113
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.21 E-value=0.23 Score=55.55 Aligned_cols=159 Identities=11% Similarity=0.095 Sum_probs=100.1
Q ss_pred CCceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEEe
Q 001978 21 RGVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 21 ~~~i~~~~v~--nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~~ 96 (987)
.+.|++++.+ ++.|+.|..+|+|..||+ .......+.. ...+..+-+.| .|..+++++. +|....++
T Consensus 165 ~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~s~---d~~v~iwd 235 (393)
T 1erj_A 165 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI------EDGVTTVAVSPGDGKYIAAGSL---DRAVRVWD 235 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC------SSCEEEEEECSTTCCEEEEEET---TSCEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc------CCCcEEEEEECCCCCEEEEEcC---CCcEEEEE
Confidence 3568999986 458899999999999999 4433333332 24678888888 7888888877 88888777
Q ss_pred cCCCCc-eecc------CCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCcccc-----ceeeeeeeeCCC
Q 001978 97 AKWSKP-RVLS------KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKRE-----KYIKLLFELNEL 164 (987)
Q Consensus 97 ~~~~k~-k~L~------klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e-----~~~k~v~~l~~~ 164 (987)
....+. +.+. .-....|.+|+|+++ ...++.|+.+|.|....+....... ........+.+-
T Consensus 236 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~------g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h 309 (393)
T 1erj_A 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRD------GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 309 (393)
T ss_dssp TTTCCEEEEEC------CCCSSCEEEEEECTT------SSEEEEEETTSEEEEEEC---------------CEEEEEECC
T ss_pred CCCCcEEEeecccccCCCCCCCCEEEEEECCC------CCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc
Confidence 654332 2221 112347999999943 2368889999999887775421100 001111122221
Q ss_pred CCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 165 PEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 165 ~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
...|.++.+.. +.++++.++....++-|.-
T Consensus 310 ~~~v~~~~~~~-----~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 310 KDFVLSVATTQ-----NDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp SSCEEEEEECG-----GGCEEEEEETTSEEEEEET
T ss_pred cCcEEEEEECC-----CCCEEEEEeCCCeEEEEEC
Confidence 25688888752 3357777777888887853
No 114
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.16 E-value=0.0034 Score=51.36 Aligned_cols=36 Identities=25% Similarity=0.536 Sum_probs=27.1
Q ss_pred cccccccch-hhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRR-KILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k-~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
...|.+|.. .+..+. ..+++.+|||.||..|+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~---------------~~~~~~~CgH~fC~~Ci~~~~ 39 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPS---------------LKLMVNVCGHTLCESCVDLLF 39 (65)
T ss_dssp TTCCSTTTTHHHHCSS---------------CCEEECTTCCCEEHHHHHHHH
T ss_pred CCcCCcCCCCccCCCc---------------cCeecCCCCCHhHHHHHHHHH
Confidence 467999998 555521 156778999999999997664
No 115
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.13 E-value=0.11 Score=63.19 Aligned_cols=160 Identities=11% Similarity=0.073 Sum_probs=101.2
Q ss_pred CCceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 21 RGVITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 21 ~~~i~~~~v~---nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
.+.|+|++.+ .++|+-|..+|+|..||+ ..............+-...|..+-+.|.|.+++.++. +|....++
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~---Dg~v~vwd 458 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW---DGELRLWD 458 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET---TSEEEEEE
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC---CCcEEEEE
Confidence 4569999987 358899999999999999 4332211110000011367999999999999998887 89998887
Q ss_pred cCCCC-ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeee-CCCCCceeeEEEE
Q 001978 97 AKWSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL-NELPEAFMGLQME 174 (987)
Q Consensus 97 ~~~~k-~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l-~~~~~~I~gi~~~ 174 (987)
....+ .+.+.. ....|.+|+|++. ...++.|+.+|.|....+... ....+... ..-...|+++.|.
T Consensus 459 ~~~~~~~~~~~~-h~~~v~~~~~s~~------~~~l~s~s~D~~i~iwd~~~~-----~~~~~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 459 LAAGVSTRRFVG-HTKDVLSVAFSLD------NRQIVSASRDRTIKLWNTLGE-----CKYTISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp TTTTEEEEEEEC-CSSCEEEEEECTT------SSCEEEEETTSCEEEECTTSC-----EEEEECSSTTSCSSCEEEEEEC
T ss_pred CCCCcceeEEeC-CCCCEEEEEEeCC------CCEEEEEeCCCEEEEEECCCC-----cceeeccCCCCCCCcEEEEEEe
Confidence 65543 222321 2347999999943 236899999998877654321 01111111 1112458888885
Q ss_pred eeccCCCceEEEEEECCCeEEEEe
Q 001978 175 TASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
. ++....++-++....+.-|.
T Consensus 527 ~---~~~~~~l~s~s~d~~v~vwd 547 (694)
T 3dm0_A 527 P---NTLQPTIVSASWDKTVKVWN 547 (694)
T ss_dssp S---CSSSCEEEEEETTSCEEEEE
T ss_pred C---CCCcceEEEEeCCCeEEEEE
Confidence 3 12224666666677777775
No 116
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=96.13 E-value=0.0014 Score=51.55 Aligned_cols=37 Identities=27% Similarity=0.626 Sum_probs=29.1
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
....|.+|...+...+ + ..++.+|||.||..|+.+.+
T Consensus 4 ~~~~C~IC~~~~~~~~---~------------~~~~~~CgH~fc~~Ci~~~~ 40 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSR---V------------VAHVLPCGHLLHRTCYEEML 40 (55)
T ss_dssp CCCSCTTTCCCCCTTT---S------------CEEECTTSCEEETTHHHHHH
T ss_pred CCCcCcccChhhcCCC---c------------CeEecCCCCcccHHHHHHHH
Confidence 3568999998875521 2 67889999999999998765
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=96.08 E-value=2.2 Score=46.73 Aligned_cols=138 Identities=8% Similarity=0.085 Sum_probs=85.3
Q ss_pred EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCc
Q 001978 33 VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGL 111 (987)
Q Consensus 33 ~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~ 111 (987)
+++.+..+|.|..||+ .......+..+ ..+..+-++|.|.+++++.. .+|..+.++....+...... .+.
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~--~d~~i~v~d~~~~~~~~~~~-~~~ 74 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVG------SNPMGAVISPDGTKVYVANA--HSNDVSIIDTATNNVIATVP-AGS 74 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECS------SSEEEEEECTTSSEEEEEEG--GGTEEEEEETTTTEEEEEEE-CSS
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecC------CCcceEEECCCCCEEEEECC--CCCeEEEEECCCCeEEEEEE-CCC
Confidence 4555667899999999 44334444433 35789999999999877652 16777777765544333222 234
Q ss_pred eEEEEeecCCCCCCCCcceEEEE-cCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEE-
Q 001978 112 VVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAV- 189 (987)
Q Consensus 112 ~i~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~as- 189 (987)
.+.+++|+++ ...++++ ..+|.|+...+..+ + ....+... ..+.++.|.. +.+.++++.
T Consensus 75 ~v~~~~~spd------g~~l~~~~~~~~~v~v~d~~~~----~-~~~~~~~~---~~~~~~~~s~-----dg~~l~~~~~ 135 (391)
T 1l0q_A 75 SPQGVAVSPD------GKQVYVTNMASSTLSVIDTTSN----T-VAGTVKTG---KSPLGLALSP-----DGKKLYVTNN 135 (391)
T ss_dssp SEEEEEECTT------SSEEEEEETTTTEEEEEETTTT----E-EEEEEECS---SSEEEEEECT-----TSSEEEEEET
T ss_pred CccceEECCC------CCEEEEEECCCCEEEEEECCCC----e-EEEEEeCC---CCcceEEECC-----CCCEEEEEeC
Confidence 8999999943 1245454 45699988877653 1 12222332 4578888852 224453333
Q ss_pred CCCeEEEEe
Q 001978 190 TPTRLYSFT 198 (987)
Q Consensus 190 t~~rly~f~ 198 (987)
....++.|.
T Consensus 136 ~~~~v~~~d 144 (391)
T 1l0q_A 136 GDKTVSVIN 144 (391)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEEE
Confidence 477888775
No 118
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.03 E-value=0.038 Score=71.97 Aligned_cols=149 Identities=7% Similarity=0.049 Sum_probs=105.3
Q ss_pred CceeEEEEeC--CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 22 GVITCMSAGN--DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 22 ~~i~~~~v~n--n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
..+++++++. +.++.|..+|.|..+|+ .+.....+.-+ ...|..+-.+|.|.+++.++. +|....++..
T Consensus 962 ~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h-----~~~v~~l~~s~dg~~l~s~~~---dg~i~vwd~~ 1033 (1249)
T 3sfz_A 962 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGH-----KKAVRHIQFTADGKTLISSSE---DSVIQVWNWQ 1033 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCC-----SSCCCCEEECSSSSCEEEECS---SSBEEEEETT
T ss_pred CcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccC-----CCceEEEEECCCCCEEEEEcC---CCEEEEEECC
Confidence 3577777765 48999999999999999 54444333322 367899999999999998887 8999888876
Q ss_pred CCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeecc
Q 001978 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (987)
..+...+.. ....|.+++|.+ .+.++.|+.+|.|....+..+. ..+. +... .++|+++.|..
T Consensus 1034 ~~~~~~~~~-~~~~v~~~~~~~-------~~~l~~~~~dg~v~vwd~~~~~----~~~~-~~~~--~~~v~~~~~s~--- 1095 (1249)
T 3sfz_A 1034 TGDYVFLQA-HQETVKDFRLLQ-------DSRLLSWSFDGTVKVWNVITGR----IERD-FTCH--QGTVLSCAISS--- 1095 (1249)
T ss_dssp TTEEECCBC-CSSCEEEEEECS-------SSEEEEEESSSEEEEEETTTTC----CCEE-EECC--SSCCCCEEECS---
T ss_pred CCceEEEec-CCCcEEEEEEcC-------CCcEEEEECCCcEEEEECCCCc----eeEE-Eccc--CCcEEEEEECC---
Confidence 655444432 346899999994 2369999999999888776541 1222 2333 36799999862
Q ss_pred CCCceEEEEEECCCeEEEEe
Q 001978 179 SNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~ 198 (987)
+.++++.++....++-|.
T Consensus 1096 --d~~~l~s~s~d~~v~iwd 1113 (1249)
T 3sfz_A 1096 --DATKFSSTSADKTAKIWS 1113 (1249)
T ss_dssp --SSSSCEEECCSSCCCEEC
T ss_pred --CCCEEEEEcCCCcEEEEE
Confidence 335666666666666664
No 119
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=96.02 E-value=0.11 Score=56.25 Aligned_cols=163 Identities=12% Similarity=0.095 Sum_probs=96.2
Q ss_pred CCceeEEEEeC----CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCC-----------------CC
Q 001978 21 RGVITCMSAGN----DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPG-----------------GS 78 (987)
Q Consensus 21 ~~~i~~~~v~n----n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~-----------------G~ 78 (987)
.+.|.+++.+. ++++.|..+|+|..+|+ .+.......... .....|..+-.+|. |.
T Consensus 103 ~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (316)
T 3bg1_A 103 DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN--AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK 180 (316)
T ss_dssp SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT--SSSSCBCCCEECCCCCC------CCSCCCCCCC
T ss_pred CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec--cccCCcceEEEccccCCccccccccccCccccc
Confidence 35689999975 37889999999999999 432221111110 11234555655665 34
Q ss_pred eEEEEeecCCCccEEEEecCCC-CceeccCCCCc--eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCcccccee
Q 001978 79 HCIATIVGSGGAETFYTHAKWS-KPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYI 155 (987)
Q Consensus 79 hlli~~~~~~~g~~~Y~~~~~~-k~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~ 155 (987)
.++.++. +|....++.... +.+.+..++|+ .|.+|+|++... .....++.|+.+|.|....+..........
T Consensus 181 ~l~sgs~---D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~--~~~~~las~s~D~~v~iw~~~~~~~~~~~~ 255 (316)
T 3bg1_A 181 RFASGGC---DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG--LPTSTIASCSQDGRVFIWTCDDASSNTWSP 255 (316)
T ss_dssp BEECCBT---TSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS--CSCCEEEEEETTCEEEEEECSSTTCCCCBC
T ss_pred eEEEecC---CCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC--CCCceEEEEcCCCeEEEEEccCccccchhh
Confidence 5555554 777766655432 22444556664 699999995421 112368889999999887765421111111
Q ss_pred eeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 156 KLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 156 k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
+.+... .++|.++.|.. +.++++.++.+..+.-|.
T Consensus 256 ~~~~~~---~~~v~~v~~sp-----~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 256 KLLHKF---NDVVWHVSWSI-----TANILAVSGGDNKVTLWK 290 (316)
T ss_dssp CEEEEC---SSCEEEEEECT-----TTCCEEEEESSSCEEEEE
T ss_pred hhhhcC---CCcEEEEEEcC-----CCCEEEEEcCCCeEEEEE
Confidence 222222 25799999862 235677777777777664
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.15 Score=55.71 Aligned_cols=112 Identities=4% Similarity=-0.033 Sum_probs=76.5
Q ss_pred CceeEEEEeC----CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 22 GVITCMSAGN----DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 22 ~~i~~~~v~n----n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
+.|++++.+. +.++.|..+|+|..+|+ .+..+.....+ ....|..+-++|.|..+++++. +|....++
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~----~~~~i~~~~~~pdg~~lasg~~---dg~i~iwd 198 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK----SDVEYSSGVLHKDSLLLALYSP---DGILDVYN 198 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC----SSCCCCEEEECTTSCEEEEECT---TSCEEEEE
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC----CCCceEEEEECCCCCEEEEEcC---CCEEEEEE
Confidence 5699999865 67888999999999999 43332211122 1346899999999998888777 89998888
Q ss_pred cCCCCc--eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 97 AKWSKP--RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 97 ~~~~k~--k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
....+. ..+..-....|++|+|++. ...++.|+ +|.|....+..
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~l~fs~~------g~~l~s~~-~~~v~iwd~~~ 244 (343)
T 3lrv_A 199 LSSPDQASSRFPVDEEAKIKEVKFADN------GYWMVVEC-DQTVVCFDLRK 244 (343)
T ss_dssp SSCTTSCCEECCCCTTSCEEEEEECTT------SSEEEEEE-SSBEEEEETTS
T ss_pred CCCCCCCccEEeccCCCCEEEEEEeCC------CCEEEEEe-CCeEEEEEcCC
Confidence 765543 2343213468999999943 12455555 66777666543
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.096 Score=57.35 Aligned_cols=152 Identities=9% Similarity=0.038 Sum_probs=94.5
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeCC---------CCC-ceeeEcCCCCCCccceeEEEeCC--CCCeEEEEeecCCCc
Q 001978 23 VITCMSAGNDVIVLGTSKGWLIRHDFG---------AGD-SYDIDLSAGRPGEQSIHKVFVDP--GGSHCIATIVGSGGA 90 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~g~l~ridl~---------~~~-~~~~~l~~~~~~~~~i~~i~lDp--~G~hlli~~~~~~~g 90 (987)
.|.+++.+.. ++-|..+|+|..+|.. ... +..+..+ ....|..+-.+| .|.+++.++. +|
T Consensus 78 ~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~s~s~---dg 149 (343)
T 3lrv_A 78 NPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD----SANEIIYMYGHNEVNTEYFIWADN---RG 149 (343)
T ss_dssp CCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC----CSSCEEEEECCC---CCEEEEEET---TC
T ss_pred CceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC----CCCCEEEEEcCCCCCCCEEEEEeC---CC
Confidence 3555555555 5566667777777662 111 2223222 135799999999 9999988887 89
Q ss_pred cEEEEecCCCCceecc-CCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCcee
Q 001978 91 ETFYTHAKWSKPRVLS-KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (987)
Q Consensus 91 ~~~Y~~~~~~k~k~L~-klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~ 169 (987)
....+.....+...+. .-.+..|.+++|+++ ..-+..|+.+|.|....+..+. .....+... -.++|+
T Consensus 150 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd------g~~lasg~~dg~i~iwd~~~~~----~~~~~~~~~-h~~~v~ 218 (343)
T 3lrv_A 150 TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD------SLLLALYSPDGILDVYNLSSPD----QASSRFPVD-EEAKIK 218 (343)
T ss_dssp CEEEEESSSSCEEEEECCCSSCCCCEEEECTT------SCEEEEECTTSCEEEEESSCTT----SCCEECCCC-TTSCEE
T ss_pred cEEEEECCCCcEEEEEecCCCCceEEEEECCC------CCEEEEEcCCCEEEEEECCCCC----CCccEEecc-CCCCEE
Confidence 9988887665543222 223346999999943 2356778999999988776541 111122331 136799
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 170 GLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
+|.|.. +.++++.++.. .+.-|.-
T Consensus 219 ~l~fs~-----~g~~l~s~~~~-~v~iwd~ 242 (343)
T 3lrv_A 219 EVKFAD-----NGYWMVVECDQ-TVVCFDL 242 (343)
T ss_dssp EEEECT-----TSSEEEEEESS-BEEEEET
T ss_pred EEEEeC-----CCCEEEEEeCC-eEEEEEc
Confidence 999962 23566665644 7777753
No 122
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.94 E-value=0.34 Score=57.80 Aligned_cols=155 Identities=12% Similarity=0.106 Sum_probs=99.4
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC-CCccEEEEe
Q 001978 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS-GGAETFYTH 96 (987)
Q Consensus 21 ~~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~-~~g~~~Y~~ 96 (987)
.+.|++++.+.+ .|+-|..+|+|..||+ .........++. -...|..+-.+|.|.+++++.... ..|..+-+.
T Consensus 59 ~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~---~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd 135 (611)
T 1nr0_A 59 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV---FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 135 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC---SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT
T ss_pred CCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecc---cCCceEEEEECCCCCEEEEEECCCCceeEEEEee
Confidence 456999999864 7888889999999999 444432222321 136899999999999888776510 012344333
Q ss_pred cCCCCceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 97 AKWSKPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 97 ~~~~k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
.. ..+..++| ..|.+|+|++.. ...++.|+.+|.|........ +.+..+.+-..+|.++.|.
T Consensus 136 ~~----~~~~~l~gh~~~v~~v~f~p~~-----~~~l~s~s~D~~v~lwd~~~~-------~~~~~l~~H~~~V~~v~fs 199 (611)
T 1nr0_A 136 TG----TSNGNLTGQARAMNSVDFKPSR-----PFRIISGSDDNTVAIFEGPPF-------KFKSTFGEHTKFVHSVRYN 199 (611)
T ss_dssp TC----CBCBCCCCCSSCEEEEEECSSS-----SCEEEEEETTSCEEEEETTTB-------EEEEEECCCSSCEEEEEEC
T ss_pred CC----CCcceecCCCCCceEEEECCCC-----CeEEEEEeCCCeEEEEECCCC-------eEeeeeccccCceEEEEEC
Confidence 22 12223344 479999999431 124888999999887764332 2233344333679999986
Q ss_pred eeccCCCceEEEEEECCCeEEEEec
Q 001978 175 TASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
. +.+.++-++.+..+.-|..
T Consensus 200 p-----dg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 200 P-----DGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp T-----TSSEEEEEETTSCEEEEET
T ss_pred C-----CCCEEEEEECCCcEEEEEC
Confidence 2 3357777777777777763
No 123
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=95.92 E-value=1.5 Score=46.38 Aligned_cols=95 Identities=8% Similarity=-0.119 Sum_probs=58.9
Q ss_pred ceeEEEEe--CC-EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 23 VITCMSAG--ND-VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 23 ~i~~~~v~--nn-~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
...+++.. ++ +++.++.+|.|+++|.... ...+..+ ...+..+.+||.|. +++++. +++..+.++...
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~-----~~~~~~l~~~~dg~-l~v~~~--~~~~i~~~d~~~ 99 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHP-----SHHQNGHCLNKQGH-LIACSH--GLRRLERQREPG 99 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESS-----CSSEEEEEECTTCC-EEEEET--TTTEEEEECSTT
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECC-----CCCcceeeECCCCc-EEEEec--CCCeEEEEcCCC
Confidence 34566665 44 7899999999999999333 5555544 35678999999997 556554 135566666544
Q ss_pred CCceeccCC-C---CceEEEEeecCCCCCCCCcceEEE
Q 001978 100 SKPRVLSKL-K---GLVVNAVAWNRQQITEASTKEIIL 133 (987)
Q Consensus 100 ~k~k~L~kl-k---g~~i~sVaw~~~~~~~~st~~iLi 133 (987)
.+.+.+... . ...+..+++++ .|.+++
T Consensus 100 g~~~~~~~~~~~~~~~~~~~i~~d~-------~G~l~v 130 (296)
T 3e5z_A 100 GEWESIADSFEGKKLNSPNDVCLAP-------DGSLWF 130 (296)
T ss_dssp CCEEEEECEETTEECCCCCCEEECT-------TSCEEE
T ss_pred CcEEEEeeccCCCCCCCCCCEEECC-------CCCEEE
Confidence 444433211 1 12345677772 246777
No 124
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=95.90 E-value=0.63 Score=51.36 Aligned_cols=293 Identities=7% Similarity=-0.022 Sum_probs=154.0
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhcC--CCC---hHHHHHHhcCcChHHHH
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKINY--ILS---FEEITLKFISVSEQDAL 439 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~--~~~---~E~v~lkFl~~~~~~~L 439 (987)
.+++..|++++|..+.+.. ......+...|..++..|+|++|...|.+... ... +-....-+...++.+.-
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 120 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHH
Confidence 3467789999999887531 12345678889999999999999999988751 111 11222223333332222
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHH---HHHH
Q 001978 440 RTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEA---TTMK 516 (987)
Q Consensus 440 ~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~---tv~~ 516 (987)
..++..-+..-+..... . ..+..+|.. .. .+.+....+++.+..... +.. .+-.
T Consensus 121 ~~~~~~al~~~p~~~~~-~----~~l~~~~~~-~g---------------~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 177 (388)
T 1w3b_A 121 VQAYVSALQYNPDLYCV-R----SDLGNLLKA-LG---------------RLEEAKACYLKAIETQPN--FAVAWSNLGC 177 (388)
T ss_dssp HHHHHHHHHHCTTCTHH-H----HHHHHHHHT-TS---------------CHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHH-H----HHHHHHHHH-cc---------------CHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Confidence 22222222211111111 0 111122210 00 112223333333332211 111 1223
Q ss_pred HHHHcCChhHHHHHHHhH--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHH-hHChHHHH
Q 001978 517 LLESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLI-MLDAYETV 583 (987)
Q Consensus 517 ll~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~l~~~----~~~~~li~k~~~~Ll-~~~p~~ti 583 (987)
++...|+.++++.+.+.. .-|..+...|...|++++|++.+.+. ++........+..+. ....++++
T Consensus 178 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 257 (388)
T 1w3b_A 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 455677777777666543 23455667788888999998877532 222334444444443 34666777
Q ss_pred HHHHcCCCCCCCcc------hhhhhhcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHH
Q 001978 584 ESWMTTNNLNPRKL------IPAMMRYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQ 657 (987)
Q Consensus 584 ~~l~~~~~ld~~~l------ip~L~~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~ 657 (987)
+.+.+...++|... ...+..- .....++.+++..+...+ .+...++.+..+|.+.++.++-+.+++
T Consensus 258 ~~~~~al~~~p~~~~~~~~l~~~~~~~-------g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (388)
T 1w3b_A 258 DTYRRAIELQPHFPDAYCNLANALKEK-------GSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYR 329 (388)
T ss_dssp HHHHHHHHTCSSCHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76654323444421 1111111 134568888888876644 456778888888888766667777777
Q ss_pred HhhCCCCCCCCcccCChHHHHHHHHhcCcceeeehhhhccccHHHHHHHHHh
Q 001978 658 CKFGKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYGMMSMHEEAVALALQ 709 (987)
Q Consensus 658 ~~~~~~~~~~~~~~yd~~~aLrlc~~~~~~~~~v~L~~~~g~~~eAl~l~l~ 709 (987)
..- ..+++.+- .+.....+|.++|++++|+..+-.
T Consensus 330 ~al----------~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 330 KAL----------EVFPEFAA-------AHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp HHT----------TSCTTCHH-------HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHH----------hcCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 651 11111110 111234567889999999887543
No 125
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.89 E-value=0.61 Score=52.44 Aligned_cols=275 Identities=13% Similarity=0.086 Sum_probs=141.7
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc--CCC---ChHHHHHHhcCcChHHHH
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YIL---SFEEITLKFISVSEQDAL 439 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~--~~~---~~E~v~lkFl~~~~~~~L 439 (987)
..++..|+|++|+.+.+.. ..-..++...|..++..|+|++|...|.+.. +.. .+-.....+...++.+.-
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 113 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA 113 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 3578889999999987631 1225677788999999999999999998875 111 112233334445555554
Q ss_pred HHHHHHHhhccCCch---HHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHH---H
Q 001978 440 RTFLLRKLDNLAKDD---KCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEA---T 513 (987)
Q Consensus 440 ~~YL~~kl~~l~~~~---~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~---t 513 (987)
..++..-+..-+.+. .....+.......-+...-.... . ...+......+++.+..... +.. .
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~--------~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 182 (450)
T 2y4t_A 114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF-G--------SGDYTAAIAFLDKILEVCVW--DAELREL 182 (450)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------HTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-H--------cCCHHHHHHHHHHHHHhCCC--ChHHHHH
Confidence 555554444322222 11111111100000000000000 0 01122223344444432221 222 2
Q ss_pred HHHHHHHcCChhHHHHHHHhH--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhh-----------
Q 001978 514 TMKLLESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKF----------- 570 (987)
Q Consensus 514 v~~ll~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~l~~~----~~~~~li~k~----------- 570 (987)
+..++...|+.++++...+.. .-+..+...|...|++++|++.+.+. ++.......+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 334556678888887777653 23456678889999999999988643 2222222221
Q ss_pred -HHHHH-hHChHHHHHHHHcCCCCCCCcc---hhh---hh-hcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHH
Q 001978 571 -APDLI-MLDAYETVESWMTTNNLNPRKL---IPA---MM-RYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLS 641 (987)
Q Consensus 571 -~~~Ll-~~~p~~ti~~l~~~~~ld~~~l---ip~---L~-~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~ 641 (987)
+..++ ....++++..+.+...++|... ... +. -+.. ......++.+++..+...+ .+...+..+..
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 337 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK----DEKPVEAIRVCSEVLQMEP-DNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 33333 2455666666644322333310 001 00 0101 1135668888888776543 35567777777
Q ss_pred HhhcCCChHHHHHHHHHh
Q 001978 642 LYAKQEDDSALLRFLQCK 659 (987)
Q Consensus 642 Ly~~~~~~~kLl~fL~~~ 659 (987)
+|...++.++-+.+++..
T Consensus 338 ~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 777766556666666654
No 126
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=95.89 E-value=2.2 Score=44.98 Aligned_cols=146 Identities=14% Similarity=0.141 Sum_probs=92.3
Q ss_pred eEEEEe-CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCc
Q 001978 25 TCMSAG-NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKP 102 (987)
Q Consensus 25 ~~~~v~-nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~ 102 (987)
.+|+-+ +|+|++|+ +|+|..||+ ....+..+.++. ....|..+...|.|.+++.++. +|....++....+
T Consensus 29 ~~l~WS~~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~---~~~~V~~v~~~~~~~~l~sgs~---Dg~v~iw~~~~~~- 100 (318)
T 4ggc_A 29 NLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQ---PGEYISSVAWIKEGNYLAVGTS---SAEVQLWDVQQQK- 100 (318)
T ss_dssp BCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCS---TTCCEEEEEECTTSSEEEEEET---TSEEEEEETTTTE-
T ss_pred eEEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecC---CCCeEEEEEECCCCCEEEEEEC---CCcEEEeecCCce-
Confidence 455555 56888887 679999999 554445455542 2367999999999999998888 8998888766543
Q ss_pred eeccCCCCc--eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCC
Q 001978 103 RVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (987)
Q Consensus 103 k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (987)
.+..++++ .+.+++++. .-+..|+.+|.+........ ..... .+......+..+.+..
T Consensus 101 -~~~~~~~h~~~~~~~~~~~--------~~l~s~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~----- 160 (318)
T 4ggc_A 101 -RLRNMTSHSARVGSLSWNS--------YILSSGSRSGHIHHHDVRVA---EHHVA---TLSGHSQEVCGLRWAP----- 160 (318)
T ss_dssp -EEEEEECCSSCEEEEEEET--------TEEEEEETTSEEEEEETTSS---SCEEE---EEECCSSCEEEEEECT-----
T ss_pred -eEEEecCccceEEEeecCC--------CEEEEEecCCceEeeecCCC---ceeEE---EEcCccCceEEEEEcC-----
Confidence 33333443 555555551 25777888887776654432 11112 2222224577777642
Q ss_pred CceEEEEEECCCeEEEEe
Q 001978 181 GTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 181 ~~~~~i~ast~~rly~f~ 198 (987)
..+.++.++....+.-|.
T Consensus 161 ~~~~l~s~~~d~~i~iwd 178 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWP 178 (318)
T ss_dssp TSSEEEEEETTSCEEEEE
T ss_pred CCCEEEEEecCcceeEEE
Confidence 235666666677777675
No 127
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=95.86 E-value=0.0033 Score=53.55 Aligned_cols=35 Identities=9% Similarity=0.241 Sum_probs=27.6
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+...-.|.+|...+.. | ++.+|||.||..|+...+
T Consensus 5 ~~~~~~C~IC~~~~~~------------------P-v~~~CgH~fc~~Ci~~~~ 39 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD------------------P-VIVSTGQTYERSSIQKWL 39 (78)
T ss_dssp CSSSSSCTTTSCCCSS------------------E-EEETTTEEEEHHHHHHHH
T ss_pred CcccCCCCCccccccC------------------C-EEcCCCCeecHHHHHHHH
Confidence 4456789999887654 5 445999999999998775
No 128
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=95.84 E-value=0.0028 Score=52.51 Aligned_cols=37 Identities=27% Similarity=0.635 Sum_probs=29.1
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
.....|.+|...+... . ..++.||||.||..|+...+
T Consensus 12 ~~~~~C~IC~~~~~~~----~------------~~~~~~C~H~fc~~Ci~~~~ 48 (69)
T 2kiz_A 12 DTEEKCTICLSILEEG----E------------DVRRLPCMHLFHQVCVDQWL 48 (69)
T ss_dssp TCCCSBTTTTBCCCSS----S------------CEEECTTSCEEEHHHHHHHH
T ss_pred CCCCCCeeCCccccCC----C------------cEEEeCCCCHHHHHHHHHHH
Confidence 4457899998877541 2 67788999999999998765
No 129
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=95.84 E-value=0.4 Score=52.95 Aligned_cols=150 Identities=8% Similarity=0.004 Sum_probs=94.2
Q ss_pred CceeEEEEe--CCEEEEEe-cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 22 GVITCMSAG--NDVIVLGT-SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 22 ~~i~~~~v~--nn~l~~~~-~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
..+.+++++ ++.++++. .+|.|..+|+ ....+..+..+ ..+..+-++|.|.+++++.. .+|..+.+..
T Consensus 74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~ 145 (391)
T 1l0q_A 74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG------KSPLGLALSPDGKKLYVTNN--GDKTVSVINT 145 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS------SSEEEEEECTTSSEEEEEET--TTTEEEEEET
T ss_pred CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC------CCcceEEECCCCCEEEEEeC--CCCEEEEEEC
Confidence 368899998 45666555 5599999999 44434434332 46789999999999866543 2678888876
Q ss_pred CCCCceeccCCCCceEEEEeecCCCCCCCCcceE-EEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEee
Q 001978 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEI-ILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (987)
Q Consensus 98 ~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~i-LiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~ 176 (987)
...+....-. .+..+.+++|++. .+.+ +.|..+|.|+...+... + ....+... ..+.++.|..
T Consensus 146 ~~~~~~~~~~-~~~~~~~~~~~~d------g~~l~~~~~~~~~v~~~d~~~~----~-~~~~~~~~---~~~~~~~~~~- 209 (391)
T 1l0q_A 146 VTKAVINTVS-VGRSPKGIAVTPD------GTKVYVANFDSMSISVIDTVTN----S-VIDTVKVE---AAPSGIAVNP- 209 (391)
T ss_dssp TTTEEEEEEE-CCSSEEEEEECTT------SSEEEEEETTTTEEEEEETTTT----E-EEEEEECS---SEEEEEEECT-
T ss_pred CCCcEEEEEe-cCCCcceEEECCC------CCEEEEEeCCCCEEEEEECCCC----e-EEEEEecC---CCccceEECC-
Confidence 5544332222 2456899999843 1245 45667899988776543 1 22222222 4578887752
Q ss_pred ccCCCceEEEEEE---CCCeEEEEec
Q 001978 177 SLSNGTRYYVMAV---TPTRLYSFTG 199 (987)
Q Consensus 177 ~~~~~~~~~i~as---t~~rly~f~g 199 (987)
+.+++++++ ....++.|.-
T Consensus 210 ----~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 210 ----EGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp ----TSSEEEEEEECSSCCEEEEEET
T ss_pred ----CCCEEEEEecCcCCCcEEEEEC
Confidence 234566655 4677887753
No 130
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=95.82 E-value=0.0019 Score=53.33 Aligned_cols=34 Identities=26% Similarity=0.528 Sum_probs=28.2
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
.+..|.+|...+.. +.++.||||.||..|+.+..
T Consensus 4 ~~~~C~IC~~~~~~------------------~~~~~~C~H~fc~~Ci~~~~ 37 (68)
T 1chc_A 4 VAERCPICLEDPSN------------------YSMALPCLHAFCYVCITRWI 37 (68)
T ss_dssp CCCCCSSCCSCCCS------------------CEEETTTTEEESTTHHHHHH
T ss_pred CCCCCeeCCccccC------------------CcEecCCCCeeHHHHHHHHH
Confidence 45789999877654 66888999999999998765
No 131
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.81 E-value=0.8 Score=52.77 Aligned_cols=204 Identities=12% Similarity=0.148 Sum_probs=110.8
Q ss_pred HHHHcCChhHHHHHHHhH-------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHh-HChHHHHH
Q 001978 517 LLESYGRVEELVFFASLK-------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIM-LDAYETVE 584 (987)
Q Consensus 517 ll~~~g~~e~~l~~a~~~-------~dy~~ll~~yi~~~~~~~AL~~l~~~----~~~~~li~k~~~~Ll~-~~p~~ti~ 584 (987)
+....|+.++++.+.+.. .-+..+...|...|+|++|++++.+. ++....+...+..++. .+.++++.
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 344567777777766553 23445667777889999998887642 2224555555655553 56677777
Q ss_pred HHHcCCCCCCCcchh--hhh-hcCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHhhC
Q 001978 585 SWMTTNNLNPRKLIP--AMM-RYSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFG 661 (987)
Q Consensus 585 ~l~~~~~ld~~~lip--~L~-~~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~~~ 661 (987)
.+.+...++|..... .+- -+.. ......++.+++..+...+. +...+..+..+|...++.++-+.+++..
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a-- 404 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYK----QGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIA-- 404 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH--
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHH--
Confidence 765432233332110 000 0000 01356688888888766543 4566666777777665545545444432
Q ss_pred CCCCCCCcccCChHHHHHHHHhcCcce-------eeehhhhcc----------ccHHHHHHHHHhcCHHHHHHHhhccCC
Q 001978 662 KGRENGPEFFYDPKYALRLCLKEKRMR-------ACVHIYGMM----------SMHEEAVALALQVDPELAMAEADKVED 724 (987)
Q Consensus 662 ~~~~~~~~~~yd~~~aLrlc~~~~~~~-------~~v~L~~~~----------g~~~eAl~l~l~~di~lA~~~~~~~~~ 724 (987)
+++........ ....+|.++ |++++|+..+-. |.+. .+ +
T Consensus 405 ----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~-----a~~~--~p-~ 460 (537)
T 3fp2_A 405 ----------------KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK-----ACEL--DP-R 460 (537)
T ss_dssp ----------------HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH-----HHHH--CT-T
T ss_pred ----------------HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH-----HHHh--CC-C
Confidence 22222111110 112455556 888888876543 2221 12 2
Q ss_pred CHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHh
Q 001978 725 DEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKE 761 (987)
Q Consensus 725 d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~ 761 (987)
+. ..|..++...... ++...+++.++.
T Consensus 461 ~~----~~~~~l~~~~~~~------g~~~~A~~~~~~ 487 (537)
T 3fp2_A 461 SE----QAKIGLAQLKLQM------EKIDEAIELFED 487 (537)
T ss_dssp CH----HHHHHHHHHHHHT------TCHHHHHHHHHH
T ss_pred CH----HHHHHHHHHHHHh------ccHHHHHHHHHH
Confidence 33 3788888877765 356677766644
No 132
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.78 E-value=0.0031 Score=53.08 Aligned_cols=38 Identities=34% Similarity=0.744 Sum_probs=30.1
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+.....|.+|...+... . .+++.||||.||..|+...+
T Consensus 12 ~~~~~~C~IC~~~~~~~----~------------~~~~~~C~H~f~~~Ci~~~~ 49 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPR----D------------ELGICPCKHAFHRKCLIKWL 49 (74)
T ss_dssp CCCSCBCSSSCCBCCSS----S------------CEEEETTTEEEEHHHHHHHH
T ss_pred CCCCCCCcCCCcccCCC----C------------cEEEcCCCCEecHHHHHHHH
Confidence 45567899999887652 1 57778999999999998764
No 133
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=95.77 E-value=0.2 Score=55.55 Aligned_cols=153 Identities=8% Similarity=0.058 Sum_probs=91.9
Q ss_pred eeEEEEeC--CEEEEEec--CCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 24 ITCMSAGN--DVIVLGTS--KGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 24 i~~~~v~n--n~l~~~~~--~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
+.+++.+. +.+++|+. .|+|..||+ ....+..+.- ...|..+-+.|.|.+++.+++ ++...+....
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~------~~~V~~v~fspdg~~l~s~s~---~~~~~~~~~~ 206 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET------RGEVKDLHFSTDGKVVAYITG---SSLEVISTVT 206 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC------SSCCCEEEECTTSSEEEEECS---SCEEEEETTT
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC------CCceEEEEEccCCceEEeccc---eeEEEEEecc
Confidence 44556654 57788874 589999999 5444444431 246899999999999888876 4544444332
Q ss_pred CCC-ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCC----cEEEEEeccCccccceeeeeeeeCCCCCceeeEEE
Q 001978 99 WSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTG----QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (987)
Q Consensus 99 ~~k-~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G----~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~ 173 (987)
... .+.....++..|.+|+|.++ ...++.|+.+| .+....+... .........+.....+|+++.|
T Consensus 207 ~~~~~~~~~~~~~~~v~~v~fspd------g~~l~~~s~d~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~V~~~~~ 277 (365)
T 4h5i_A 207 GSCIARKTDFDKNWSLSKINFIAD------DTVLIAASLKKGKGIVLTKISIKSG---NTSVLRSKQVTNRFKGITSMDV 277 (365)
T ss_dssp CCEEEEECCCCTTEEEEEEEEEET------TEEEEEEEESSSCCEEEEEEEEETT---EEEEEEEEEEESSCSCEEEEEE
T ss_pred CcceeeeecCCCCCCEEEEEEcCC------CCEEEEEecCCcceeEEeecccccc---eecceeeeeecCCCCCeEeEEE
Confidence 222 22233335678999999843 23566666554 2333333322 1112222344433467999988
Q ss_pred EeeccCCCceEEEEEECCCeEEEEec
Q 001978 174 ETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
. .+.++++.++....+.-|.-
T Consensus 278 S-----pdg~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 278 D-----MKGELAVLASNDNSIALVKL 298 (365)
T ss_dssp C-----TTSCEEEEEETTSCEEEEET
T ss_pred C-----CCCCceEEEcCCCEEEEEEC
Confidence 5 23468888888777777753
No 134
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=95.74 E-value=4 Score=50.10 Aligned_cols=283 Identities=11% Similarity=0.048 Sum_probs=144.0
Q ss_pred CceeEEEEe-CCEEEEEecCCeEEEEeCCCCCceeeEcC-----CCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 001978 22 GVITCMSAG-NDVIVLGTSKGWLIRHDFGAGDSYDIDLS-----AGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 22 ~~i~~~~v~-nn~l~~~~~~g~l~ridl~~~~~~~~~l~-----~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (987)
..|.++... ++.||+|+..|-|+++|........+... ........|..|+.|+.|. +.|.|. ++-.+++
T Consensus 313 ~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~---~~Gl~~~ 388 (781)
T 3v9f_A 313 ASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTD---GGGINVF 388 (781)
T ss_dssp SCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEB---SSCEEEE
T ss_pred CeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeC---CCcEEEE
Confidence 467888774 56899999888899999844444444321 1122246799999999886 677775 3445555
Q ss_pred ecCCCCceecc---CCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeee--eeCCCCCceee
Q 001978 96 HAKWSKPRVLS---KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF--ELNELPEAFMG 170 (987)
Q Consensus 96 ~~~~~k~k~L~---klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~--~l~~~~~~I~g 170 (987)
+....+.+... .+.+..|.+++-++ .+.+.+||..|-|+.+....+ .++... .++ ...|.+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~-------~g~lWigt~~~Gl~~~~~~~~-----~~~~~~~~~~~--~~~v~~ 454 (781)
T 3v9f_A 389 ENGKRVAIYNKENRELLSNSVLCSLKDS-------EGNLWFGTYLGNISYYNTRLK-----KFQIIELEKNE--LLDVRV 454 (781)
T ss_dssp ETTEEEEECC-----CCCSBEEEEEECT-------TSCEEEEETTEEEEEECSSSC-----EEEECCSTTTC--CCCEEE
T ss_pred ECCCCeEEEccCCCCCCCcceEEEEECC-------CCCEEEEeccCCEEEEcCCCC-----cEEEeccCCCC--CCeEEE
Confidence 54433222221 23345788888772 357999998644766543221 133321 112 234777
Q ss_pred EEEEeeccCCCceEEEEEECCCeEEEEecCC-chHHHHhhhhcccccccccC-CCcCCCcceeeeccCCCceEEEeec--
Q 001978 171 LQMETASLSNGTRYYVMAVTPTRLYSFTGFG-SLDTVFASYLDRAVHFMELP-GEILNSELHFFIKQRRAVHFAWLSG-- 246 (987)
Q Consensus 171 i~~~~~~~~~~~~~~i~ast~~rly~f~g~~-~l~~lf~~~~~~~~~~~elp-~~~~~s~l~~~~~~~~~~~faW~t~-- 246 (987)
|.... .+. +|+.|..-||.|.... .+ .. +...+ ...+...+..... + +..-.|+..
T Consensus 455 i~~d~------~g~-lwigt~~Gl~~~~~~~~~~----~~-------~~~~~~~~~~~~~i~~i~~-d-~~g~lWigt~~ 514 (781)
T 3v9f_A 455 FYEDK------NKK-IWIGTHAGVFVIDLASKKV----IH-------HYDTSNSQLLENFVRSIAQ-D-SEGRFWIGTFG 514 (781)
T ss_dssp EEECT------TSE-EEEEETTEEEEEESSSSSC----CE-------EECTTTSSCSCSCEEEEEE-C-TTCCEEEEESS
T ss_pred EEECC------CCC-EEEEECCceEEEeCCCCeE----Ee-------cccCcccccccceeEEEEE-c-CCCCEEEEEcC
Confidence 66542 123 4555557788886422 11 11 11111 0011111111111 1 223356543
Q ss_pred CceEEEEeecCCCCCCCCCCCccccccccccccccCCCCCCCCCcccccC-CceEEEEECCEE-EEEecCCCceEEEEEe
Q 001978 247 AGIYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVS-EYHFLLLMGNKV-KVVNRISEQIIEELQF 324 (987)
Q Consensus 247 ~gi~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~p~si~lT-~~h~llL~~~~l-~vvn~l~~~~v~~~~l 324 (987)
.|++. ++... . .+ ..|.. ..+-....+.++... +-++.+-...-| ..++.-+++.. .+
T Consensus 515 ~Gl~~--~~~~~--------~-~~-----~~~~~-~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~---~~ 574 (781)
T 3v9f_A 515 GGVGI--YTPDM--------Q-LV-----RKFNQ-YEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQ---VF 574 (781)
T ss_dssp SCEEE--ECTTC--------C-EE-----EEECT-TTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCE---EE
T ss_pred CCEEE--EeCCC--------C-eE-----EEccC-CCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEE---Ec
Confidence 57766 33210 0 11 11111 000001123444443 333444445666 66666555532 22
Q ss_pred cCCCCccccceeeEeeccCCCeEEEEeCCcEEEEEcccc
Q 001978 325 DQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDE 363 (987)
Q Consensus 325 ~~~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e 363 (987)
....+-....+.+++.|. .+.+|+.|.+.|+++.+...
T Consensus 575 ~~~~gl~~~~i~~i~~d~-~g~lW~~t~~Gl~~~~~~~~ 612 (781)
T 3v9f_A 575 QRKEGLPNTHIRAISEDK-NGNIWASTNTGISCYITSKK 612 (781)
T ss_dssp CGGGTCSCCCCCEEEECS-SSCEEEECSSCEEEEETTTT
T ss_pred cccCCCCCceEEEEEECC-CCCEEEEcCCceEEEECCCC
Confidence 111111123677888884 68899999999999987643
No 135
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=95.70 E-value=0.0021 Score=50.60 Aligned_cols=38 Identities=32% Similarity=0.769 Sum_probs=28.5
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEc-CCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFP-CGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFp-CgH~fH~~CL~~~~ 883 (987)
++.+..|.+|...+... . ..++.| |||.||.+|+.+..
T Consensus 2 ~~~~~~C~IC~~~~~~~----~------------~~~~~~~C~H~f~~~Ci~~w~ 40 (55)
T 1iym_A 2 MDDGVECAVCLAELEDG----E------------EARFLPRCGHGFHAECVDMWL 40 (55)
T ss_dssp CCCSCCCTTTCCCCCTT----S------------CCEECSSSCCEECTTHHHHTT
T ss_pred CCCCCcCccCCccccCC----C------------ceEECCCCCCcccHHHHHHHH
Confidence 35567899999887651 1 456676 99999999997553
No 136
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=95.69 E-value=0.52 Score=51.86 Aligned_cols=105 Identities=13% Similarity=0.149 Sum_probs=70.4
Q ss_pred eCCEEEE--EecCCeEEEEeC-CCCC----------------ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCc
Q 001978 30 GNDVIVL--GTSKGWLIRHDF-GAGD----------------SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGA 90 (987)
Q Consensus 30 ~nn~l~~--~~~~g~l~ridl-~~~~----------------~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g 90 (987)
+.+.+++ |..+|.|..+|+ .+.. +..+.-+ ...|..+-++|.|.+++.++. +|
T Consensus 146 s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h-----~~~v~~~~~s~~g~~l~s~s~---d~ 217 (355)
T 3vu4_A 146 SNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH-----TNPIKMVRLNRKSDMVATCSQ---DG 217 (355)
T ss_dssp ETTEEEEEESSCTTCEEEEECCC------------------CCEEECCC-----SSCEEEEEECTTSSEEEEEET---TC
T ss_pred EccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc-----CCceEEEEECCCCCEEEEEeC---CC
Confidence 3366666 467788888888 3221 1222222 468999999999999998888 89
Q ss_pred c-EEEEecCCCC-ceeccC-CCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 91 E-TFYTHAKWSK-PRVLSK-LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 91 ~-~~Y~~~~~~k-~k~L~k-lkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
. ...++....+ .+.+.. .....|.+++|+++ ...++.|+.+|.|....+...
T Consensus 218 ~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~------~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 218 TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTD------GSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTT------SCEEEEEETTCEEEEEESSCC
T ss_pred CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCC------CCEEEEEECCCEEEEEEccCC
Confidence 7 8777765443 333431 13458999999943 236888899999988887543
No 137
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=95.69 E-value=0.0052 Score=57.52 Aligned_cols=34 Identities=21% Similarity=0.500 Sum_probs=26.4
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
...-.|.+|...+.. | +..||||.||..|+....
T Consensus 50 ~~~~~C~IC~~~~~~------------------p-~~~~CgH~fC~~Ci~~~~ 83 (124)
T 3fl2_A 50 EETFQCICCQELVFR------------------P-ITTVCQHNVCKDCLDRSF 83 (124)
T ss_dssp HHHTBCTTTSSBCSS------------------E-EECTTSCEEEHHHHHHHH
T ss_pred ccCCCCCcCChHHcC------------------c-EEeeCCCcccHHHHHHHH
Confidence 345689999877665 4 345999999999998765
No 138
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.65 E-value=0.0033 Score=51.06 Aligned_cols=36 Identities=22% Similarity=0.596 Sum_probs=28.0
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
+.....|.+|...+.. +.+ .+|||.||..|+.+...
T Consensus 17 ~~~~~~C~IC~~~~~~------------------p~~-~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 17 LQEEVICPICLDILQK------------------PVT-IDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCCCCBCTTTCSBCSS------------------CEE-CTTSSEECHHHHHHHHH
T ss_pred CccCCCCCcCCchhCC------------------eEE-eCCCCcchHHHHHHHHH
Confidence 4456789999876655 544 49999999999987763
No 139
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.25 Score=62.24 Aligned_cols=156 Identities=9% Similarity=0.076 Sum_probs=100.9
Q ss_pred CCceeEEEEeC--CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 21 RGVITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 21 ~~~i~~~~v~n--n~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
++.|+|++.+. +.|+.|..+|+|..||....+. ...++ ....|..+-..| |.+++.++. +|....++..
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~-~~~~~----~~~~V~~l~fsp-g~~L~S~s~---D~~v~lWd~~ 87 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV-VIKLE----DRSAIKEMRFVK-GIYLVVINA---KDTVYVLSLY 87 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE-EEECS----SCCCEEEEEEET-TTEEEEEET---TCEEEEEETT
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE-EEEcC----CCCCEEEEEEcC-CCEEEEEEC---cCeEEEEECC
Confidence 45799999986 4899999999999999832221 12222 146899999999 887777766 8888888876
Q ss_pred CCCc-eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeee----eeeCCCCCceeeEEE
Q 001978 99 WSKP-RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLL----FELNELPEAFMGLQM 173 (987)
Q Consensus 99 ~~k~-k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v----~~l~~~~~~I~gi~~ 173 (987)
..+. +.+. .. ..|++|+|++. ...+++|+.+|.|....+.........+..+ ..+..-.++|++|.|
T Consensus 88 ~~~~~~~~~-~~-~~V~~v~~sp~------g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~ 159 (902)
T 2oaj_A 88 SQKVLTTVF-VP-GKITSIDTDAS------LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQW 159 (902)
T ss_dssp TCSEEEEEE-CS-SCEEEEECCTT------CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEE
T ss_pred CCcEEEEEc-CC-CCEEEEEECCC------CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEE
Confidence 5432 2332 22 47999999943 2378999999999888776531100000000 112222467999999
Q ss_pred EeeccCCCceEEEEEECCCeEEEEe
Q 001978 174 ETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.. .+.+.++.++....+ -|.
T Consensus 160 sp----~~~~~l~~g~~dg~v-lWd 179 (902)
T 2oaj_A 160 NP----RDIGTVLISYEYVTL-TYS 179 (902)
T ss_dssp ET----TEEEEEEEECSSCEE-EEE
T ss_pred cc----CCCCEEEEEeCCCcE-EEE
Confidence 73 122456655556666 675
No 140
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.59 E-value=0.3 Score=54.82 Aligned_cols=151 Identities=11% Similarity=0.066 Sum_probs=94.5
Q ss_pred CCceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 21 RGVITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 21 ~~~i~~~~v~--nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.+.+++++ +++++.+..+|.|.+||+ ....+..+..+ ...+..+-++|.|.+++++.. .+|..+.+..
T Consensus 169 ~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~--~~~~i~~~d~ 241 (433)
T 3bws_A 169 LGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLT-----GKWSKILLYDPIRDLVYCSNW--ISEDISVIDR 241 (433)
T ss_dssp CCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECS-----SSSEEEEEEETTTTEEEEEET--TTTEEEEEET
T ss_pred CCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCC-----CCCeeEEEEcCCCCEEEEEec--CCCcEEEEEC
Confidence 3468899984 456677778899999999 44444445433 357899999999999987762 1677777776
Q ss_pred CCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEc--------CCCcEEEEEeccCccccceeeeeeeeCCCCCcee
Q 001978 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT--------DTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (987)
Q Consensus 98 ~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt--------~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~ 169 (987)
...+....... +..+.+++|++. .+.+++|+ .+|.|+...+..+ +.... ...+ +.+.
T Consensus 242 ~~~~~~~~~~~-~~~~~~~~~~~~------g~~l~~~~~~~~~~~~~dg~i~~~d~~~~----~~~~~-~~~~---~~~~ 306 (433)
T 3bws_A 242 KTKLEIRKTDK-IGLPRGLLLSKD------GKELYIAQFSASNQESGGGRLGIYSMDKE----KLIDT-IGPP---GNKR 306 (433)
T ss_dssp TTTEEEEECCC-CSEEEEEEECTT------SSEEEEEEEESCTTCSCCEEEEEEETTTT----EEEEE-EEEE---ECEE
T ss_pred CCCcEEEEecC-CCCceEEEEcCC------CCEEEEEECCCCccccCCCeEEEEECCCC----cEEee-ccCC---CCcc
Confidence 54433222222 346999999843 23577776 4778888776543 11122 2222 3577
Q ss_pred eEEEEeeccCCCceEEEEE-ECCCeEEEEe
Q 001978 170 GLQMETASLSNGTRYYVMA-VTPTRLYSFT 198 (987)
Q Consensus 170 gi~~~~~~~~~~~~~~i~a-st~~rly~f~ 198 (987)
++.|.. +.+.++++ +...+++.|.
T Consensus 307 ~~~~~~-----~g~~l~~~~~~~~~v~v~d 331 (433)
T 3bws_A 307 HIVSGN-----TENKIYVSDMCCSKIEVYD 331 (433)
T ss_dssp EEEECS-----STTEEEEEETTTTEEEEEE
T ss_pred eEEECC-----CCCEEEEEecCCCEEEEEE
Confidence 787742 22344443 3467777664
No 141
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=95.57 E-value=0.16 Score=56.05 Aligned_cols=116 Identities=9% Similarity=0.009 Sum_probs=80.1
Q ss_pred CCceeEEEEeCC--EEEEEecCCe-EEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 21 RGVITCMSAGND--VIVLGTSKGW-LIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 21 ~~~i~~~~v~nn--~l~~~~~~g~-l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
.+.|++++.+.+ .|+-|..+|+ |..||+ .+..+..+.-.. ....|..+-.+|.|.+++.++. +|....+.
T Consensus 195 ~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~---h~~~v~~~~~s~~~~~l~s~s~---d~~v~iw~ 268 (355)
T 3vu4_A 195 TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL---DRADVVDMKWSTDGSKLAVVSD---KWTLHVFE 268 (355)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTT---CCSCEEEEEECTTSCEEEEEET---TCEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CCCcEEEEEECCCCCEEEEEEC---CCEEEEEE
Confidence 457999999764 7888889998 999999 565555554210 1368999999999999998887 88887777
Q ss_pred cCCCC---ceeccC--------------------CCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 97 AKWSK---PRVLSK--------------------LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 97 ~~~~k---~k~L~k--------------------lkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
..... ...+.. -.......+||.++ ...+++|+.+|.++.+.+..+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d------~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 269 IFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE------SSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp SSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS------SEEEEEETTTTEEEEEEEEEE
T ss_pred ccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCC------CCEEEEEeCCCeEEEEEEEcC
Confidence 54332 111111 01112366888832 347999999998888777654
No 142
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.51 E-value=0.35 Score=53.76 Aligned_cols=157 Identities=7% Similarity=0.037 Sum_probs=98.4
Q ss_pred ceeEEEEe---CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCccEEEEec
Q 001978 23 VITCMSAG---NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 23 ~i~~~~v~---nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.|++++.. ++.++-|..+|+|..||+ .+..+..+..+....-...|..+...| .|..++.++. +|....+..
T Consensus 159 ~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~---D~~v~~wd~ 235 (380)
T 3iz6_a 159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC---DTTVRLWDL 235 (380)
T ss_dssp CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET---TSCEEEEET
T ss_pred ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC---CCeEEEEEC
Confidence 45555554 346888999999999999 555444442222222245788888876 5666666666 898888876
Q ss_pred CCC--CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCC-----CCCceee
Q 001978 98 KWS--KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE-----LPEAFMG 170 (987)
Q Consensus 98 ~~~--k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~-----~~~~I~g 170 (987)
... ..+.+.. ....|.+|+|+++ ...|+.|+.+|.|....+..+. ...++.... ....|++
T Consensus 236 ~~~~~~~~~~~~-h~~~v~~v~~~p~------~~~l~s~s~D~~i~lwd~~~~~-----~~~~~~~~~~~~~~~~~~v~~ 303 (380)
T 3iz6_a 236 RITSRAVRTYHG-HEGDINSVKFFPD------GQRFGTGSDDGTCRLFDMRTGH-----QLQVYNREPDRNDNELPIVTS 303 (380)
T ss_dssp TTTCCCCEEECC-CSSCCCEEEECTT------SSEEEEECSSSCEEEEETTTTE-----EEEEECCCCSSSCCSSCSCSE
T ss_pred CCCCcceEEECC-cCCCeEEEEEecC------CCeEEEEcCCCeEEEEECCCCc-----EEEEecccccccccccCceEE
Confidence 432 2333322 2347999999943 2368889999999887765431 112222211 1124788
Q ss_pred EEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 171 LQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 171 i~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
+.|.. +.++++.++....++-|.-
T Consensus 304 ~~~s~-----~g~~l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 304 VAFSI-----SGRLLFAGYSNGDCYVWDT 327 (380)
T ss_dssp EEECS-----SSSEEEEECTTSCEEEEET
T ss_pred EEECC-----CCCEEEEEECCCCEEEEEC
Confidence 88852 3357777777888888863
No 143
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=95.44 E-value=0.0051 Score=60.74 Aligned_cols=33 Identities=24% Similarity=0.540 Sum_probs=26.2
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
...|.+|...+.. +..+-+|||.||..|+...+
T Consensus 54 ~~~C~IC~~~~~~------------------p~~~~~CgH~fC~~Ci~~~~ 86 (165)
T 2ckl_B 54 ELMCPICLDMLKN------------------TMTTKECLHRFCADCIITAL 86 (165)
T ss_dssp HHBCTTTSSBCSS------------------EEEETTTCCEEEHHHHHHHH
T ss_pred CCCCcccChHhhC------------------cCEeCCCCChhHHHHHHHHH
Confidence 3489999877655 55555999999999998775
No 144
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.36 E-value=0.0035 Score=52.98 Aligned_cols=37 Identities=30% Similarity=0.639 Sum_probs=29.3
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
....|.+|...+... . .+++.||||.||..|+...+.
T Consensus 22 ~~~~C~IC~~~~~~~----~------------~~~~l~C~H~fh~~Ci~~w~~ 58 (75)
T 1x4j_A 22 EQTLCVVCMCDFESR----Q------------LLRVLPCNHEFHAKCVDKWLK 58 (75)
T ss_dssp SCCEETTTTEECCBT----C------------EEEEETTTEEEETTHHHHHHH
T ss_pred CCCCCeECCcccCCC----C------------eEEEECCCCHhHHHHHHHHHH
Confidence 456899999887651 1 577889999999999988753
No 145
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.34 E-value=0.0066 Score=50.06 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=30.5
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
......|.+|...+...... ...+++.+|||.||..|+...+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~------------~~~~~~~~CgH~fc~~Ci~~~~ 53 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQN------------GRLIVSTECGHVFCSQCLRDSL 53 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTT------------TCCEEECSSSCEEEHHHHHHHH
T ss_pred CCCCCCCcccCccccccccc------------cCCeEeCCCCChhcHHHHHHHH
Confidence 34567899999887662100 0156788999999999998765
No 146
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=95.31 E-value=0.35 Score=52.24 Aligned_cols=168 Identities=11% Similarity=0.020 Sum_probs=102.9
Q ss_pred CCceeEEEEe----CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCC--CCeEEEEeecCCCccEE
Q 001978 21 RGVITCMSAG----NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPG--GSHCIATIVGSGGAETF 93 (987)
Q Consensus 21 ~~~i~~~~v~----nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~--G~hlli~~~~~~~g~~~ 93 (987)
.+.|.+++.+ ++.|+-|..+|+|..||+ .+.......+. .-...|..+-..|. |..++.++. +|...
T Consensus 57 ~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~g~~lasgs~---D~~i~ 130 (316)
T 3bg1_A 57 EGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA---GHDSSVNSVCWAPHDYGLILACGSS---DGAIS 130 (316)
T ss_dssp SSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEEC---CCSSCCCEEEECCTTTCSCEEEECS---SSCEE
T ss_pred CccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEcc---CCCCceEEEEECCCCCCcEEEEEcC---CCCEE
Confidence 4579999985 578999999999999999 43211112222 11357889999887 777777776 78887
Q ss_pred EEecCCCC-ceeccCCC--CceEEEEeecCCCCCC-----------CCcceEEEEcCCCcEEEEEeccCccccceeeeee
Q 001978 94 YTHAKWSK-PRVLSKLK--GLVVNAVAWNRQQITE-----------ASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF 159 (987)
Q Consensus 94 Y~~~~~~k-~k~L~klk--g~~i~sVaw~~~~~~~-----------~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~ 159 (987)
.+...... ......+. ...|.+++|++..... .....++.|+.+|.|....+... ..++.+.
T Consensus 131 lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~----~~~~~~~ 206 (316)
T 3bg1_A 131 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED----GQWKEEQ 206 (316)
T ss_dssp EEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT----SCEEEEE
T ss_pred EEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC----Cccceee
Confidence 66654331 21222222 3468999999542110 01235778889998877766432 1123333
Q ss_pred eeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 160 ELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 160 ~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
.+..-.++|.++.|..-. +.+.+.++-++....+.-|.-
T Consensus 207 ~l~~h~~~V~~v~~sp~~-~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 207 KLEAHSDWVRDVAWAPSI-GLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp CCBCCSSCEEEEECCCCS-SCSCCEEEEEETTCEEEEEEC
T ss_pred ecccCCCceEEEEecCCC-CCCCceEEEEcCCCeEEEEEc
Confidence 444334679999986311 001256777777888887753
No 147
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=95.28 E-value=0.0049 Score=51.28 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=30.0
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+....|.+|...+..+.. .....++.+|||.||..|+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~------------~~~~~~~~~CgH~fc~~Ci~~~~ 48 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQ------------NGRLIVSTECGHVFCSQCLRDSL 48 (71)
T ss_dssp TTCCBCTTTCCBHHHHHT------------TTCCEEECTTSCEEEHHHHHHHH
T ss_pred CCCCCCcccChhhhcccc------------ccCCeEeCCCCChHhHHHHHHHH
Confidence 456789999988766200 00156788999999999998765
No 148
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.21 E-value=0.0056 Score=52.63 Aligned_cols=48 Identities=21% Similarity=0.386 Sum_probs=27.0
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
.+..|++|...+...... -.+... ......+.-+|||.||.+|+.+-+
T Consensus 14 ~~~~C~IC~~~~~~~C~i--C~~~~~--~~~~~~~~~~C~H~FH~~Ci~~Wl 61 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLR--CQAENK--QEDCVVVWGECNHSFHNCCMSLWV 61 (81)
T ss_dssp CCSCBTTTTBCTTSCCTT--HHHHTC--TTTCCEEEETTSCEEEHHHHHHHT
T ss_pred CCCCCcccChhhhccCcc--cccccC--CCceEEEeCCCCCccChHHHHHHH
Confidence 357799999887552100 000000 000133444599999999998765
No 149
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=95.18 E-value=0.76 Score=51.57 Aligned_cols=125 Identities=7% Similarity=0.059 Sum_probs=80.6
Q ss_pred eeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCc
Q 001978 24 ITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKP 102 (987)
Q Consensus 24 i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~ 102 (987)
|++++..+++|+++ .+|.|..+|. .-.+........ ..|..+- |.+..++++++ +|..+-++.+..+.
T Consensus 90 V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~-----~~v~~i~--~~~p~~av~~~---dG~L~v~dl~~~~~ 158 (388)
T 1xip_A 90 VIFVCFHGDQVLVS-TRNALYSLDLEELSEFRTVTSFE-----KPVFQLK--NVNNTLVILNS---VNDLSALDLRTKST 158 (388)
T ss_dssp EEEEEEETTEEEEE-ESSEEEEEESSSTTCEEEEEECS-----SCEEEEE--ECSSEEEEEET---TSEEEEEETTTCCE
T ss_pred eeEEEECCCEEEEE-cCCcEEEEEchhhhccCccceee-----cceeeEE--ecCCCEEEEEC---CCCEEEEEccCCcc
Confidence 89999988999999 8899999998 444433333221 2344432 22334888887 89999888765544
Q ss_pred eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeee----CC---CCCceeeEEEE
Q 001978 103 RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFEL----NE---LPEAFMGLQME 174 (987)
Q Consensus 103 k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l----~~---~~~~I~gi~~~ 174 (987)
..+. -.|+||||++ .| +.+|..+|.|..+..+... -.-|..+.. .+ .+..|.+|.|.
T Consensus 159 ~~~~----~~Vs~v~WSp-------kG-~~vg~~dg~i~~~~~~~~~---~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl 222 (388)
T 1xip_A 159 KQLA----QNVTSFDVTN-------SQ-LAVLLKDRSFQSFAWRNGE---MEKQFEFSLPSELEELPVEEYSPLSVTIL 222 (388)
T ss_dssp EEEE----ESEEEEEECS-------SE-EEEEETTSCEEEEEEETTE---EEEEEEECCCHHHHTSCTTTSEEEEEEES
T ss_pred cccc----CCceEEEEcC-------Cc-eEEEEcCCcEEEEcCCCcc---ccccceecCCcccccccCCCeeEEEEEEe
Confidence 4332 3799999993 23 7899999998888665431 000222211 11 13568999996
No 150
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.17 E-value=0.0039 Score=53.03 Aligned_cols=38 Identities=24% Similarity=0.766 Sum_probs=29.6
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
......|.+|...+... . ..++.+|||.||..|+...+
T Consensus 12 ~~~~~~C~IC~~~~~~~----~------------~~~~~~C~H~fc~~Ci~~~~ 49 (78)
T 2ect_A 12 VGSGLECPVCKEDYALG----E------------SVRQLPCNHLFHDSCIVPWL 49 (78)
T ss_dssp SSSSCCCTTTTSCCCTT----S------------CEEECTTSCEEETTTTHHHH
T ss_pred CCCCCCCeeCCccccCC----C------------CEEEeCCCCeecHHHHHHHH
Confidence 34467899999887651 1 56778999999999998765
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=95.09 E-value=0.21 Score=57.14 Aligned_cols=114 Identities=10% Similarity=0.046 Sum_probs=74.6
Q ss_pred CceeEEEEeC--CEEEE----EecCCeEEEEeC-CC--------CCceeeEcCCCCCCccceeEEEeCCC-CCeEEEEee
Q 001978 22 GVITCMSAGN--DVIVL----GTSKGWLIRHDF-GA--------GDSYDIDLSAGRPGEQSIHKVFVDPG-GSHCIATIV 85 (987)
Q Consensus 22 ~~i~~~~v~n--n~l~~----~~~~g~l~ridl-~~--------~~~~~~~l~~~~~~~~~i~~i~lDp~-G~hlli~~~ 85 (987)
+.|++++.+. +.|++ |..+|.|..||+ .. ..+..+.... +-...|..+-.+|. |..++.++.
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK--DAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCC--SGGGSEEEEEECSSCTTEEEEEET
T ss_pred CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccC--CCCCceEEEEECCCCCCEEEEEEC
Confidence 3589999985 46664 335789999998 33 1112233321 11468999999998 666666666
Q ss_pred cCCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEec
Q 001978 86 GSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (987)
Q Consensus 86 ~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (987)
+|....+.....+...-..-.+..|.+|+|++. ...++.|+.+|.|....+.
T Consensus 171 ---Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspd------g~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 171 ---DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPK------GKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp ---TSCEEEEEESSSEEEEEEECGGGCEEEEEECTT------SSCEEEEETTSCEEEECTT
T ss_pred ---CCeEEEEEcCCCcceeeccCCCCceeEEEEcCC------CCEEEEEcCCCcEEEEccC
Confidence 899988876554221111112357999999943 2368999999999887654
No 152
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.02 E-value=1.3 Score=49.82 Aligned_cols=154 Identities=10% Similarity=0.128 Sum_probs=94.0
Q ss_pred CCCceeEEEEeCC--EEEEEecC---CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEE
Q 001978 20 GRGVITCMSAGND--VIVLGTSK---GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY 94 (987)
Q Consensus 20 ~~~~i~~~~v~nn--~l~~~~~~---g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y 94 (987)
..+.+.+++.+.+ .++.+... +.|+.+|+...+...+.-+ ...+..+-.+|.|.+++++....++...|.
T Consensus 177 ~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-----~~~~~~~~~spdg~~la~~~~~~g~~~i~~ 251 (415)
T 2hqs_A 177 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-----PRHNGAPAFSPDGSKLAFALSKTGSLNLYV 251 (415)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-----SSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC-----CCcccCEEEcCCCCEEEEEEecCCCceEEE
Confidence 3456888888854 56666655 3999999933333333221 246888999999999886654222334677
Q ss_pred EecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCC-C--cEEEEEeccCccccceeeeeeeeCCCCCceeeE
Q 001978 95 THAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT-G--QLHEMAVDEKDKREKYIKLLFELNELPEAFMGL 171 (987)
Q Consensus 95 ~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~-G--~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi 171 (987)
++....+.+.+... +..+.+++|.++ ...++.++.+ | .||...+..+. .+.+ ... ...+.++
T Consensus 252 ~d~~~~~~~~l~~~-~~~~~~~~~spd------g~~l~~~s~~~g~~~i~~~d~~~~~-----~~~l-~~~--~~~~~~~ 316 (415)
T 2hqs_A 252 MDLASGQIRQVTDG-RSNNTEPTWFPD------SQNLAFTSDQAGRPQVYKVNINGGA-----PQRI-TWE--GSQNQDA 316 (415)
T ss_dssp EETTTCCEEECCCC-SSCEEEEEECTT------SSEEEEEECTTSSCEEEEEETTSSC-----CEEC-CCS--SSEEEEE
T ss_pred EECCCCCEEeCcCC-CCcccceEECCC------CCEEEEEECCCCCcEEEEEECCCCC-----EEEE-ecC--CCcccCe
Confidence 77766666666643 357999999843 2357777653 4 67766655431 2222 122 2457777
Q ss_pred EEEeeccCCCceEEEEEECC---CeEEEEe
Q 001978 172 QMETASLSNGTRYYVMAVTP---TRLYSFT 198 (987)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~---~rly~f~ 198 (987)
.|. .+.+++++++.. ..+|.|.
T Consensus 317 ~~s-----pdG~~l~~~~~~~g~~~i~~~d 341 (415)
T 2hqs_A 317 DVS-----SDGKFMVMVSSNGGQQHIAKQD 341 (415)
T ss_dssp EEC-----TTSSEEEEEEECSSCEEEEEEE
T ss_pred EEC-----CCCCEEEEEECcCCceEEEEEE
Confidence 775 233567766542 4677665
No 153
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=95.02 E-value=0.0089 Score=52.60 Aligned_cols=36 Identities=22% Similarity=0.638 Sum_probs=27.9
Q ss_pred cccccccccccchhhhhcccccccccccCCCCCCCCEEEEc-CCChhHHHhHHHHH
Q 001978 829 VIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFP-CGHAFHAQCLIAHV 883 (987)
Q Consensus 829 ~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFp-CgH~fH~~CL~~~~ 883 (987)
.+...-.|.+|...+.. |. +.| |||.|+..|+....
T Consensus 9 ~~~~~~~C~IC~~~~~~------------------p~-~~~~CgH~fC~~Ci~~~~ 45 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTD------------------AV-VIPCCGNSYCDECIRTAL 45 (92)
T ss_dssp CCCTTTEETTTTEECSS------------------CE-ECTTTCCEECHHHHHHHH
T ss_pred cCCcCCCCCCCChhhcC------------------ce-ECCCCCCHHHHHHHHHHH
Confidence 34556789999976655 54 568 99999999998765
No 154
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=95.01 E-value=0.0065 Score=49.24 Aligned_cols=39 Identities=26% Similarity=0.468 Sum_probs=28.7
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
...|.+|...+..+....+ ..++.+|||.||..|+.+.+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~------------~~~~~~CgH~fc~~Ci~~~~ 41 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGR------------LIVSTECGHVFCSQCLRDSL 41 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTC------------CEEEETTSCEEEHHHHHHHH
T ss_pred CCCCCccChhhhCccccCC------------CEEeCCCCCchhHHHHHHHH
Confidence 4689999988765210001 56888999999999998765
No 155
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=95.00 E-value=0.0066 Score=53.43 Aligned_cols=37 Identities=22% Similarity=0.556 Sum_probs=28.6
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
.....|.+|...+... . ..++.||||.||..|+....
T Consensus 38 ~~~~~C~IC~~~~~~~----~------------~~~~l~C~H~Fh~~Ci~~wl 74 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKG----D------------VATELPCHHYFHKPCVSIWL 74 (91)
T ss_dssp SSCSEETTTTEECCTT----C------------EEEEETTTEEEEHHHHHHHH
T ss_pred CCCCCCcccChhhcCC----C------------cEEecCCCChHHHHHHHHHH
Confidence 3456899998776551 2 57778999999999998764
No 156
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=95.00 E-value=0.6 Score=51.62 Aligned_cols=153 Identities=10% Similarity=0.048 Sum_probs=93.2
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc----EE
Q 001978 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE----TF 93 (987)
Q Consensus 21 ~~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~----~~ 93 (987)
.+.|.+++.+.+ .++.+. .+.+.+++. ....+...... .....|..+-..|.|..++.++. ++. ..
T Consensus 176 ~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~v~fspdg~~l~~~s~---d~~~~~~i~ 248 (365)
T 4h5i_A 176 RGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDF---DKNWSLSKINFIADDTVLIAASL---KKGKGIVLT 248 (365)
T ss_dssp SSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCC---CTTEEEEEEEEEETTEEEEEEEE---SSSCCEEEE
T ss_pred CCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecC---CCCCCEEEEEEcCCCCEEEEEec---CCcceeEEe
Confidence 456899999865 555555 556777877 44433222111 12467899999999999888876 332 22
Q ss_pred EEecCCCC-----ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCce
Q 001978 94 YTHAKWSK-----PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAF 168 (987)
Q Consensus 94 Y~~~~~~k-----~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I 168 (987)
-+.....+ .+.+.. ....|+||+|+++ ..-+..|+.+|.|....+... +.++.+.+-. ..+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Spd------g~~lasgs~D~~V~iwd~~~~----~~~~~~~~gH--~~~V 315 (365)
T 4h5i_A 249 KISIKSGNTSVLRSKQVTN-RFKGITSMDVDMK------GELAVLASNDNSIALVKLKDL----SMSKIFKQAH--SFAI 315 (365)
T ss_dssp EEEEETTEEEEEEEEEEES-SCSCEEEEEECTT------SCEEEEEETTSCEEEEETTTT----EEEEEETTSS--SSCE
T ss_pred ecccccceecceeeeeecC-CCCCeEeEEECCC------CCceEEEcCCCEEEEEECCCC----cEEEEecCcc--cCCE
Confidence 23322221 122222 2347999999943 236778999999988776543 1222222223 3679
Q ss_pred eeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 169 MGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 169 ~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
++|.|. .+.++++-++.+..+.-|.
T Consensus 316 ~~v~fS-----pdg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 316 TEVTIS-----PDSTYVASVSAANTIHIIK 340 (365)
T ss_dssp EEEEEC-----TTSCEEEEEETTSEEEEEE
T ss_pred EEEEEC-----CCCCEEEEEeCCCeEEEEE
Confidence 999996 3346788778777666663
No 157
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.90 E-value=0.0069 Score=50.65 Aligned_cols=36 Identities=19% Similarity=0.555 Sum_probs=28.1
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+.....|.+|...+.. +..+-+|||.||..|+...+
T Consensus 12 ~~~~~~C~IC~~~~~~------------------p~~~~~CgH~fC~~Ci~~~~ 47 (72)
T 2djb_A 12 LTPYILCSICKGYLID------------------ATTITECLHTFCKSCIVRHF 47 (72)
T ss_dssp CCGGGSCTTTSSCCSS------------------CEECSSSCCEECHHHHHHHH
T ss_pred cCCCCCCCCCChHHHC------------------cCEECCCCCHHHHHHHHHHH
Confidence 4456789999876655 55555999999999998775
No 158
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=94.86 E-value=1.3 Score=52.80 Aligned_cols=112 Identities=12% Similarity=0.079 Sum_probs=78.2
Q ss_pred CCceeEEEEeCC---EEEEEecCCeEEEEeCCCCCc-eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 21 RGVITCMSAGND---VIVLGTSKGWLIRHDFGAGDS-YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 21 ~~~i~~~~v~nn---~l~~~~~~g~l~ridl~~~~~-~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
.+.|.+++.+.+ .++-|..+|+|..+|..+.+. ..+.-+ ...|..+-+.|.|..++.++. +|....++
T Consensus 147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H-----~~~V~~v~fspdg~~las~s~---D~~i~lwd 218 (611)
T 1nr0_A 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEH-----TKFVHSVRYNPDGSLFASTGG---DGTIVLYN 218 (611)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCC-----SSCEEEEEECTTSSEEEEEET---TSCEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccc-----cCceEEEEECCCCCEEEEEEC---CCcEEEEE
Confidence 346899999875 588899999999999843322 222222 367999999999998888877 89988887
Q ss_pred cCCCC-ceeccC------CCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEec
Q 001978 97 AKWSK-PRVLSK------LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (987)
Q Consensus 97 ~~~~k-~k~L~k------lkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (987)
....+ .+.+.. -....|.+|+|+++ ...++.|+.+|.|....+.
T Consensus 219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd------g~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD------GTKIASASADKTIKIWNVA 269 (611)
T ss_dssp TTTCCEEEECBCTTSSSCSSSSCEEEEEECTT------SSEEEEEETTSEEEEEETT
T ss_pred CCCCcEeeeeccccccccccCCCEEEEEECCC------CCEEEEEeCCCeEEEEeCC
Confidence 54433 223321 12347999999943 2367788888888776654
No 159
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=94.82 E-value=0.57 Score=57.86 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=96.5
Q ss_pred CCceeEEEEe-CCEEEEEecCCeEEEEeCCCCCceeeEcCCC----CCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 001978 21 RGVITCMSAG-NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAG----RPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 21 ~~~i~~~~v~-nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~----~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (987)
.+.|.+++.. ++.||+|+..|-|+++|........+..+.. ......|..++.|+.|..+.|.|. ++-.+.+
T Consensus 356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~---~~Gl~~~ 432 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH---AGGLSIL 432 (795)
T ss_dssp CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET---TTEEEEE
T ss_pred CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC---cCceeEE
Confidence 3568888875 5689999999889999985455555543210 112367999999999976778776 4556777
Q ss_pred ecCCCCceeccC----CCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeC---C-CCCc
Q 001978 96 HAKWSKPRVLSK----LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELN---E-LPEA 167 (987)
Q Consensus 96 ~~~~~k~k~L~k----lkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~---~-~~~~ 167 (987)
+.+..+.+.+.. +.+..|.+++.++ .+.+.+||.+| |+.+....+ .++...... . ....
T Consensus 433 d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-------~g~lwigt~~G-l~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 499 (795)
T 4a2l_A 433 HRNSGQVENFNQRNSQLVNENVYAILPDG-------EGNLWLGTLSA-LVRFNPEQR-----SFTTIEKEKDGTPVVSKQ 499 (795)
T ss_dssp ETTTCCEEEECTTTSCCSCSCEEEEEECS-------SSCEEEEESSC-EEEEETTTT-----EEEECCBCTTCCBCCCCC
T ss_pred eCCCCcEEEeecCCCCcCCCeeEEEEECC-------CCCEEEEecCc-eeEEeCCCC-----eEEEccccccccccCCce
Confidence 766555555432 3456799998872 35799999977 666544321 122221110 0 0134
Q ss_pred eeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 168 FMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
|.+|.... .+ -+|+.|..-||.|..
T Consensus 500 i~~i~~d~------~g-~lWigt~~Gl~~~~~ 524 (795)
T 4a2l_A 500 ITTLFRDS------HK-RLWIGGEEGLSVFKQ 524 (795)
T ss_dssp EEEEEECT------TC-CEEEEESSCEEEEEE
T ss_pred EEEEEECC------CC-CEEEEeCCceEEEeC
Confidence 67766542 12 244455567887754
No 160
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.80 E-value=0.0065 Score=48.25 Aligned_cols=35 Identities=26% Similarity=0.717 Sum_probs=27.3
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+.....|.+|...+.. + ++.+|||.||..|+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~------------------p-~~~~CgH~fC~~Ci~~~~ 46 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE------------------P-VIIECGHNFCKACITRWW 46 (58)
T ss_dssp SCCCCBCSSSCCBCSS------------------C-CCCSSCCCCCHHHHHHHT
T ss_pred cccCCCCccCCcccCc------------------c-EeCCCCCccCHHHHHHHH
Confidence 3456789999877655 4 336999999999998764
No 161
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=94.77 E-value=0.64 Score=49.68 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=57.5
Q ss_pred CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCC--
Q 001978 31 NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKL-- 108 (987)
Q Consensus 31 nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~kl-- 108 (987)
+.+++....++.|+++|........+..+ ..+..+.+||.|. +++++. ...+.++....+.+.+...
T Consensus 25 ~~l~~~d~~~~~i~~~d~~~~~~~~~~~~------~~~~~i~~~~dG~-l~v~~~----~~l~~~d~~~g~~~~~~~~~~ 93 (297)
T 3g4e_A 25 NSLLFVDIPAKKVCRWDSFTKQVQRVTMD------APVSSVALRQSGG-YVATIG----TKFCALNWKEQSAVVLATVDN 93 (297)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEEECS------SCEEEEEEBTTSS-EEEEET----TEEEEEETTTTEEEEEEECCT
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEeCC------CceEEEEECCCCC-EEEEEC----CeEEEEECCCCcEEEEEecCC
Confidence 34667777889999999943444445443 4688999999999 777765 4566666554444443321
Q ss_pred --CCceEEEEeecCCCCCCCCcceEEEEc
Q 001978 109 --KGLVVNAVAWNRQQITEASTKEIILGT 135 (987)
Q Consensus 109 --kg~~i~sVaw~~~~~~~~st~~iLiGt 135 (987)
....+..+++++ .|.+.+||
T Consensus 94 ~~~~~~~~di~~d~-------dG~l~~~~ 115 (297)
T 3g4e_A 94 DKKNNRFNDGKVDP-------AGRYFAGT 115 (297)
T ss_dssp TCSSEEEEEEEECT-------TSCEEEEE
T ss_pred CCCCCCCCCEEECC-------CCCEEEec
Confidence 234577888873 24688887
No 162
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.76 E-value=0.0077 Score=50.36 Aligned_cols=35 Identities=23% Similarity=0.620 Sum_probs=27.0
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+.....|.+|...+.. + ++.+|||.||..|+....
T Consensus 17 ~~~~~~C~IC~~~~~~------------------~-~~~~CgH~fC~~Ci~~~~ 51 (73)
T 2ysl_A 17 LQEEVICPICLDILQK------------------P-VTIDCGHNFCLKCITQIG 51 (73)
T ss_dssp CCCCCBCTTTCSBCSS------------------E-EECTTCCEEEHHHHHHHC
T ss_pred CccCCEeccCCcccCC------------------e-EEcCCCChhhHHHHHHHH
Confidence 4456789999876554 3 345999999999998765
No 163
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=94.75 E-value=1.2 Score=50.18 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=83.3
Q ss_pred CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEeecC
Q 001978 41 GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNR 120 (987)
Q Consensus 41 g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~ 120 (987)
+.|..+|+.......+.-+ ...+..+-..|.|.+++.++...+++..+.++....+.+.+....+ .+.+++|++
T Consensus 159 ~~i~i~d~~g~~~~~l~~~-----~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~-~~~~~~~sp 232 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRS-----PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR-HNGAPAFSP 232 (415)
T ss_dssp EEEEEEETTSCSCEEEEEE-----SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS-CEEEEEECT
T ss_pred ceEEEEcCCCCCCEEEeCC-----CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCC-cccCEEEcC
Confidence 7999999944444433322 3578999999999998888761112366667766666666665443 799999994
Q ss_pred CCCCCCCcceEE-EEcCCCc--EEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCC---eE
Q 001978 121 QQITEASTKEII-LGTDTGQ--LHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPT---RL 194 (987)
Q Consensus 121 ~~~~~~st~~iL-iGt~~G~--i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~---rl 194 (987)
+ ...++ .++.+|. ||...+..+. .+.+ ...++.+.++.|. .+.+.+++++... ++
T Consensus 233 d------g~~la~~~~~~g~~~i~~~d~~~~~-----~~~l---~~~~~~~~~~~~s-----pdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 233 D------GSKLAFALSKTGSLNLYVMDLASGQ-----IRQV---TDGRSNNTEPTWF-----PDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp T------SSEEEEEECTTSSCEEEEEETTTCC-----EEEC---CCCSSCEEEEEEC-----TTSSEEEEEECTTSSCEE
T ss_pred C------CCEEEEEEecCCCceEEEEECCCCC-----EEeC---cCCCCcccceEEC-----CCCCEEEEEECCCCCcEE
Confidence 3 12455 4555554 7777665431 2332 2223568888885 2336777766532 78
Q ss_pred EEEe
Q 001978 195 YSFT 198 (987)
Q Consensus 195 y~f~ 198 (987)
|.|.
T Consensus 294 ~~~d 297 (415)
T 2hqs_A 294 YKVN 297 (415)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 164
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=94.71 E-value=3.1 Score=43.67 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=38.8
Q ss_pred HHHchhhHHHHHHhcCC-----ch---hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD-----PL---QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~~---~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+.+.+. |. ....++...|..++..|+|++|.+.|.+..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 70 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788999999888652 22 245788899999999999999999987754
No 165
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.65 E-value=0.008 Score=50.09 Aligned_cols=33 Identities=24% Similarity=0.679 Sum_probs=25.3
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
....|.+|...+.. + ++.||||.||..|+...+
T Consensus 14 ~~~~C~IC~~~~~~------------------~-~~~~CgH~fC~~Ci~~~~ 46 (71)
T 2d8t_A 14 TVPECAICLQTCVH------------------P-VSLPCKHVFCYLCVKGAS 46 (71)
T ss_dssp SCCBCSSSSSBCSS------------------E-EEETTTEEEEHHHHHHCT
T ss_pred CCCCCccCCcccCC------------------C-EEccCCCHHHHHHHHHHH
Confidence 45689999876543 3 567999999999997553
No 166
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.63 Score=54.72 Aligned_cols=154 Identities=10% Similarity=0.099 Sum_probs=101.7
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 21 RGVITCMSAGND--VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 21 ~~~i~~~~v~nn--~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
.+.|++++-+.+ .|+.+..+|.|..+|... ....++ +...-....|+.+-..|.|.++.+++. +|..-.++.+
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~---DGtVkIWd~~ 159 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE---DGELQFFSIR 159 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET---TSEEEEEECC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC---CCEEEEEECC
Confidence 356888888876 788899999999999622 223333 322111346999999999999999998 8999887766
Q ss_pred CCCc-----eeccCCC------CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccc-eeeeeeeeCCCCC
Q 001978 99 WSKP-----RVLSKLK------GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREK-YIKLLFELNELPE 166 (987)
Q Consensus 99 ~~k~-----k~L~klk------g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~-~~k~v~~l~~~~~ 166 (987)
..+. -.+..++ ...|.+|+|.+ .| ++.|+.++.|+...+..+. .+ ..+.+...+ ..
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-------dg-Laass~D~tVrlWd~~~~~--~~~~~~tL~~~h--~~ 227 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-------DV-LVAALSNNSVFSMTVSASS--HQPVSRMIQNAS--RR 227 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-------TE-EEEEETTCCEEEECCCSSS--SCCCEEEEECCC--SS
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcC-------Cc-EEEEeCCCeEEEEECCCCc--cccceeeecccc--cC
Confidence 5432 1222221 13799999993 24 8899999999998876642 11 111221122 25
Q ss_pred ceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 167 AFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
.|.++.|. + +.++.++ +..++-|.-
T Consensus 228 ~V~svaFs-----g--~~LASa~-~~tIkLWd~ 252 (588)
T 2j04_A 228 KITDLKIV-----D--YKVVLTC-PGYVHKIDL 252 (588)
T ss_dssp CCCCEEEE-----T--TEEEEEC-SSEEEEEET
T ss_pred cEEEEEEE-----C--CEEEEEe-CCeEEEEEC
Confidence 69999996 1 4555544 567777763
No 167
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.62 E-value=0.012 Score=51.14 Aligned_cols=39 Identities=21% Similarity=0.450 Sum_probs=29.5
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+.....|.+|...+.... + ..++.+|||.||..|+.+.+
T Consensus 12 ~~~~~~C~IC~~~~~~~~---~------------~~~~~~CgH~fC~~Ci~~~~ 50 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQ---L------------RPKLLHCGHTICRQCLEKLL 50 (88)
T ss_dssp CCSCCBCTTTCCBCCTTS---S------------CEEECSSSCEEEHHHHHHHH
T ss_pred ccCCCCCccCCccccccC---C------------CeEECCCCChhhHHHHHHHH
Confidence 445678999988766511 1 36778999999999998775
No 168
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=94.52 E-value=1 Score=47.66 Aligned_cols=156 Identities=13% Similarity=0.034 Sum_probs=94.6
Q ss_pred ceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 23 VITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 23 ~i~~~~v~--nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
.+.+++.. ++.++.|..+|.|..+|+ .+.......... ......|..+...|.+..++.....+.++....++...
T Consensus 152 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~ 230 (318)
T 4ggc_A 152 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 230 (318)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEE-CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT
T ss_pred ceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeee-cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc
Confidence 35555544 458888999999999999 433322111111 11235788888888888777655422345555555544
Q ss_pred CCceeccCCCCceEEEEeecCCCCCCCCcceEEEE--cCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILG--TDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 100 ~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiG--t~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
.+..... .....+.+++|.+. .+.+++| +.+|.|+...+..+ +.+..+.+-.++|+++.|..
T Consensus 231 ~~~~~~~-~~~~~v~~~~~~~~------~~~~~~~sg~~d~~i~iwd~~~~-------~~~~~l~gH~~~V~~l~~sp-- 294 (318)
T 4ggc_A 231 GACLSAV-DAHSQVCSILWSPH------YKELISGHGFAQNQLVIWKYPTM-------AKVAELKGHTSRVLSLTMSP-- 294 (318)
T ss_dssp CCEEEEE-ECSSCEEEEEEETT------TTEEEEEECTTTCCEEEEETTTC-------CEEEEECCCSSCEEEEEECT--
T ss_pred ccccccc-cceeeeeeeeeccc------ccceEEEEEcCCCEEEEEECCCC-------cEEEEEcCCCCCEEEEEEcC--
Confidence 4333322 24568999999843 2356665 47899988776543 23334443236799999862
Q ss_pred cCCCceEEEEEECCCeEEEEe
Q 001978 178 LSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 178 ~~~~~~~~i~ast~~rly~f~ 198 (987)
+.++++-++....+.-|.
T Consensus 295 ---dg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 295 ---DGATVASAAADETLRLWR 312 (318)
T ss_dssp ---TSSCEEEEETTTEEEEEC
T ss_pred ---CCCEEEEEecCCeEEEEE
Confidence 335677777778787774
No 169
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.50 E-value=0.82 Score=51.38 Aligned_cols=155 Identities=14% Similarity=0.071 Sum_probs=98.7
Q ss_pred ceeEEEEe--CCEEEEEecCCeEEEEeC-CCCCce-eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 23 VITCMSAG--NDVIVLGTSKGWLIRHDF-GAGDSY-DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 23 ~i~~~~v~--nn~l~~~~~~g~l~ridl-~~~~~~-~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
.++++... ++.++.+..+|.+..+|. ...... .+... ......|..+...|.+..++++..++.+|....++..
T Consensus 232 ~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF--TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEE--CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred ceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeee--cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence 45555554 468888889999999999 333211 11111 1124678889899998888776542336777777765
Q ss_pred CCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEc--CCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEee
Q 001978 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT--DTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt--~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~ 176 (987)
..+...... .+..+.+++|.+. .+.+++|+ .+|.|+...+... +.+..+.+-.++|+++.|..
T Consensus 310 t~~~~~~~~-~~~~v~~~~~~~~------~~~lv~~sg~~d~~I~iwd~~~~-------~~v~~l~gH~~~V~~l~~sp- 374 (420)
T 4gga_A 310 SGACLSAVD-AHSQVCSILWSPH------YKELISGHGFAQNQLVIWKYPTM-------AKVAELKGHTSRVLSLTMSP- 374 (420)
T ss_dssp TTEEEEEEE-CSSCEEEEEEETT------TTEEEEEECTTTCCEEEEETTTC-------CEEEEECCCSSCEEEEEECT-
T ss_pred ccccceeec-cccceeeeeecCC------CCeEEEEEecCCCEEEEEECCCC-------cEEEEEcCCCCCEEEEEEcC-
Confidence 544322221 3458899999843 34677764 7899988766442 33444543236799999862
Q ss_pred ccCCCceEEEEEECCCeEEEEe
Q 001978 177 SLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f~ 198 (987)
+.++++-++.+..+.-|.
T Consensus 375 ----dg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 375 ----DGATVASAAADETLRLWR 392 (420)
T ss_dssp ----TSSCEEEEETTTEEEEEC
T ss_pred ----CCCEEEEEecCCeEEEEE
Confidence 335677777788888784
No 170
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=94.49 E-value=0.24 Score=58.16 Aligned_cols=151 Identities=11% Similarity=0.096 Sum_probs=93.4
Q ss_pred CceeEEEEe-CCEEEEEecCCeEEEEeC-CCCCc-eeeEcCCCCCCccceeEE--EeCCCCCeE-EEEeecCCCccEEEE
Q 001978 22 GVITCMSAG-NDVIVLGTSKGWLIRHDF-GAGDS-YDIDLSAGRPGEQSIHKV--FVDPGGSHC-IATIVGSGGAETFYT 95 (987)
Q Consensus 22 ~~i~~~~v~-nn~l~~~~~~g~l~ridl-~~~~~-~~~~l~~~~~~~~~i~~i--~lDp~G~hl-li~~~~~~~g~~~Y~ 95 (987)
+.|+|++.+ ++.|+.|..+|+|..+|+ .+... ..+..+ ...|..| +..|.|.++ +.++. ||....+
T Consensus 267 ~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H-----~~~V~sv~~~~s~~g~~~laS~S~---D~tvklW 338 (524)
T 2j04_B 267 SLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVH-----DSYILSVSTAYSDFEDTVVSTVAV---DGYFYIF 338 (524)
T ss_dssp TCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECS-----SSCEEEEEEECCTTSCCEEEEEET---TSEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecc-----cccEEEEEEEcCCCCCeEEEEecc---CCeEEEE
Confidence 568999985 468899999999999999 45332 223333 4678998 457778444 44454 7888777
Q ss_pred ecCCCCc-eecc-CCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEE
Q 001978 96 HAKWSKP-RVLS-KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (987)
Q Consensus 96 ~~~~~k~-k~L~-klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~ 173 (987)
+....+. +.+. ...+..|.+|+|++. ...++.|+.++.|....+... +....+. -. .++|++|.|
T Consensus 339 D~~~~~~~~~~~~~~~~~~v~~v~fsp~------~~~l~s~~~d~tv~lwd~~~~----~~~~~l~-gH--~~~V~sva~ 405 (524)
T 2j04_B 339 NPKDIATTKTTVSRFRGSNLVPVVYCPQ------IYSYIYSDGASSLRAVPSRAA----FAVHPLV-SR--ETTITAIGV 405 (524)
T ss_dssp CGGGHHHHCEEEEECSCCSCCCEEEETT------TTEEEEECSSSEEEEEETTCT----TCCEEEE-EC--SSCEEEEEC
T ss_pred ECCCCCcccccccccccCcccceEeCCC------cCeEEEeCCCCcEEEEECccc----ccceeee-cC--CCceEEEEe
Confidence 7644321 1211 122235789999943 225778888887665544322 1122322 23 267999998
Q ss_pred EeeccCCCceEEEEEECCCeEEEEe
Q 001978 174 ETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.. ..+.++-++....+.-|.
T Consensus 406 Sp-----~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 406 SR-----LHPMVLAGSADGSLIITN 425 (524)
T ss_dssp CS-----SCCBCEEEETTTEEECCB
T ss_pred CC-----CCCeEEEEECCCEEEEEe
Confidence 52 224666667777777554
No 171
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=94.28 E-value=1.2 Score=48.03 Aligned_cols=158 Identities=10% Similarity=0.107 Sum_probs=93.2
Q ss_pred eeEEEEeC--CEEEEEec-CCeEEEEeC-CCCCceeeEcCCCCCC----ccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 001978 24 ITCMSAGN--DVIVLGTS-KGWLIRHDF-GAGDSYDIDLSAGRPG----EQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 24 i~~~~v~n--n~l~~~~~-~g~l~ridl-~~~~~~~~~l~~~~~~----~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (987)
..+++++. +.++++.. +|.|..+|+ ....+..+.++..... ...+..+.++|.|.+++++.. ..++..+.+
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~i~~~ 169 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI-GKESVIWVV 169 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE-SSSCEEEEE
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec-CCCceEEEE
Confidence 46677765 55666654 689999999 5555566666532110 013688999999999998873 114667777
Q ss_pred ecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCC--CCCceeeEEE
Q 001978 96 HAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE--LPEAFMGLQM 173 (987)
Q Consensus 96 ~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~--~~~~I~gi~~ 173 (987)
+....+....-...+..+.+++|+++ .+.+.+++.+|.|+...+... + ....+..+. ....+.++.|
T Consensus 170 d~~~~~~~~~~~~~~~~~~~~~~s~d------g~~l~~~~~~~~i~~~d~~~~----~-~~~~~~~~~~~~~~~~~~~~~ 238 (353)
T 3vgz_A 170 DGGNIKLKTAIQNTGKMSTGLALDSE------GKRLYTTNADGELITIDTADN----K-ILSRKKLLDDGKEHFFINISL 238 (353)
T ss_dssp ETTTTEEEEEECCCCTTCCCCEEETT------TTEEEEECTTSEEEEEETTTT----E-EEEEEECCCSSSCCCEEEEEE
T ss_pred cCCCCceEEEecCCCCccceEEECCC------CCEEEEEcCCCeEEEEECCCC----e-EEEEEEcCCCCCCcccceEEE
Confidence 76554433222223556888899842 236888888898887655432 1 122223321 1234677777
Q ss_pred EeeccCCCceEEEEEEC-CCeEEEEe
Q 001978 174 ETASLSNGTRYYVMAVT-PTRLYSFT 198 (987)
Q Consensus 174 ~~~~~~~~~~~~i~ast-~~rly~f~ 198 (987)
.. +.+.++++.. ...++.|.
T Consensus 239 s~-----dg~~l~~~~~~~~~v~~~d 259 (353)
T 3vgz_A 239 DT-----ARQRAFITDSKAAEVLVVD 259 (353)
T ss_dssp ET-----TTTEEEEEESSSSEEEEEE
T ss_pred CC-----CCCEEEEEeCCCCEEEEEE
Confidence 62 2244544443 36777664
No 172
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=94.28 E-value=5.9 Score=41.14 Aligned_cols=150 Identities=8% Similarity=0.006 Sum_probs=88.9
Q ss_pred CceeEEEEe-CCEEEEEec-CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 22 GVITCMSAG-NDVIVLGTS-KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 22 ~~i~~~~v~-nn~l~~~~~-~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
....++++. ++.+|++.. +|.|.++|.. ..+..+.++.. ...+..|.+||.|. +.++.. +++..+.++..
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~---~~~~~~i~~~~~g~-l~v~~~--~~~~v~~~d~~- 91 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTP---DAKVMCLIVSSLGD-IWFTEN--GANKIGKLSKK- 91 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSST---TCCEEEEEECTTSC-EEEEET--TTTEEEEECTT-
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCC---CCcceeEEECCCCC-EEEEec--CCCeEEEECCC-
Confidence 457888885 456888874 6899999986 55666666521 35789999999997 445443 14556666554
Q ss_pred CCceeccC-CCCceEEEEeecCCCCCCCCcceEEEEcC-CCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 100 SKPRVLSK-LKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 100 ~k~k~L~k-lkg~~i~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
.+.+.... ..+..+.++++++ .+.+.+++. .|.|+....+ + .+.. +.++.....+.+|.+..
T Consensus 92 g~~~~~~~~~~~~~~~~i~~~~-------~g~l~v~~~~~~~i~~~~~~-g-----~~~~-~~~~~~~~~~~~i~~d~-- 155 (300)
T 2qc5_A 92 GGFTEYPLPQPDSGPYGITEGL-------NGDIWFTQLNGDRIGKLTAD-G-----TIYE-YDLPNKGSYPAFITLGS-- 155 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEECS-------TTCEEEEETTTTEEEEECTT-S-----CEEE-EECSSTTCCEEEEEECT--
T ss_pred CCeEEecCCCCCCCCccceECC-------CCCEEEEccCCCeEEEECCC-C-----CEEE-ccCCCCCCCceeEEECC--
Confidence 33332211 1245788999883 246888775 5777766443 1 1222 23442123467777652
Q ss_pred cCCCceEEEEEEC-CCeEEEEec
Q 001978 178 LSNGTRYYVMAVT-PTRLYSFTG 199 (987)
Q Consensus 178 ~~~~~~~~i~ast-~~rly~f~g 199 (987)
+.+ +.+++. ..+++.|..
T Consensus 156 ---~g~-l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 156 ---DNA-LWFTENQNNSIGRITN 174 (300)
T ss_dssp ---TSS-EEEEETTTTEEEEECT
T ss_pred ---CCC-EEEEecCCCeEEEECC
Confidence 123 333333 567887754
No 173
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.25 E-value=1.4 Score=47.17 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=45.2
Q ss_pred HHHHchhhHHHHHHhcC-----Cch--hHhHHH------------HHHHHHHHhcCCHHHHHHHHHhhc--CCCC---hH
Q 001978 369 KVYLDMKEYAAALANCR-----DPL--QRDQVY------------LVQAEAAFATKDFHRAASFYAKIN--YILS---FE 424 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~-----~~~--~~~~V~------------~~~~~~l~~~g~y~~Aa~~~~~~~--~~~~---~E 424 (987)
..+...|+|++|++..+ .|. ....+. ...|..++..|+|++|.+.|.+.. .... +-
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 45677788888888764 230 111122 233788888899999988888764 1111 22
Q ss_pred HHHHHhcCcChHHHHHHHHHHHhh
Q 001978 425 EITLKFISVSEQDALRTFLLRKLD 448 (987)
Q Consensus 425 ~v~lkFl~~~~~~~L~~YL~~kl~ 448 (987)
....-+...++.+.-..++..-+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~ 182 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASK 182 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233334445555555555554444
No 174
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=94.20 E-value=3.9 Score=45.07 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=39.5
Q ss_pred HHHHchhhHHHHHHhcCC-----ch---hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRD-----PL---QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~-----~~---~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..++..|+|++|+.+.+. +. ....++...|..++..|+|++|...|.+..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 346788999999988652 22 234688899999999999999999987765
No 175
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=94.17 E-value=1.1 Score=46.49 Aligned_cols=146 Identities=10% Similarity=0.037 Sum_probs=82.5
Q ss_pred ceeEEEEeC--CEEE-EEecCCe--EEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 23 VITCMSAGN--DVIV-LGTSKGW--LIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 23 ~i~~~~v~n--n~l~-~~~~~g~--l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.+++.+. +.++ .+..+|. |+.+|+....... +.. ....+..+..+|.|.++++++...+....|-+..
T Consensus 130 ~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~--~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~ 204 (297)
T 2ojh_A 130 PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR--LTH---GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV 204 (297)
T ss_dssp SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE--CCC---SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE--ccc---CCCccccceECCCCCEEEEEecCCCCccEEEECC
Confidence 467777763 3454 5667775 5555553233322 221 1357889999999999888764212233444444
Q ss_pred CCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCC-----------CcEEEEEeccCccccceeeeeeeeCCCCC
Q 001978 98 KWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT-----------GQLHEMAVDEKDKREKYIKLLFELNELPE 166 (987)
Q Consensus 98 ~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~-----------G~i~e~~i~~~~~~e~~~k~v~~l~~~~~ 166 (987)
...+.+.+.. .+..+.+++|.++ ...+++++.+ +.|+...+..+ ..+.+..+...++
T Consensus 205 ~~~~~~~~~~-~~~~~~~~~~s~d------g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~~~~~~~~~~~~ 272 (297)
T 2ojh_A 205 DGSSVERITD-SAYGDWFPHPSPS------GDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG-----NVETLFDLFGGQG 272 (297)
T ss_dssp TSSCEEECCC-CSEEEEEEEECTT------SSEEEEEEEETTCCSCCSSEEEEEEEEETTSC-----SCEEEEEEEESTT
T ss_pred CCCCcEEEec-CCcccCCeEECCC------CCEEEEEEcCCCCCcccccCceEEEEEecCCC-----CceeeeccCCCCc
Confidence 5555666654 3468999999843 2357777665 34666655443 1233444332235
Q ss_pred ceeeEEEEeeccCCCceEEEEEEC
Q 001978 167 AFMGLQMETASLSNGTRYYVMAVT 190 (987)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~ast 190 (987)
+|.++.|. .+.+.+++++.
T Consensus 273 ~~~~~~~s-----pdg~~l~~~~~ 291 (297)
T 2ojh_A 273 TMNSPNWS-----PDGDEFAYVRY 291 (297)
T ss_dssp TSCSCCBC-----TTSSEEEEEEE
T ss_pred ccccceEC-----CCCCEEEEEEe
Confidence 67777775 22355666544
No 176
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=94.16 E-value=2.6 Score=43.42 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=90.1
Q ss_pred CCceeEEEEeCC--EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC-CCccEEEEe
Q 001978 21 RGVITCMSAGND--VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS-GGAETFYTH 96 (987)
Q Consensus 21 ~~~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~-~~g~~~Y~~ 96 (987)
.+.+.+++.+.+ .++.+ .+|.|+++|+ .+.+...+. .. .....+..+..+|.|.+++++.... +....|.+.
T Consensus 41 ~~~v~~~~~spdg~~l~~~-~~~~i~~~d~~~~~~~~~~~--~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~ 116 (297)
T 2ojh_A 41 PELFEAPNWSPDGKYLLLN-SEGLLYRLSLAGDPSPEKVD--TG-FATICNNDHGISPDGALYAISDKVEFGKSAIYLLP 116 (297)
T ss_dssp SSCCEEEEECTTSSEEEEE-ETTEEEEEESSSCCSCEECC--CT-TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEE
T ss_pred CcceEeeEECCCCCEEEEE-cCCeEEEEeCCCCCCceEec--cc-cccccccceEECCCCCEEEEEEeCCCCcceEEEEE
Confidence 456889998744 66665 4789999999 524433221 11 1135678889999999998887411 135556666
Q ss_pred cCCCCceeccCCCCceEEEEeecCCCCCCCCcceEE-EEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 97 AKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEII-LGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 97 ~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iL-iGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
....+.+.+... ..+.+++|+++ ...++ .+..+|.+....++...+ ..+.+ ...++.+.++.|..
T Consensus 117 ~~~~~~~~~~~~--~~~~~~~~spd------g~~l~~~~~~~~~~~l~~~~~~~~---~~~~~---~~~~~~~~~~~~s~ 182 (297)
T 2ojh_A 117 STGGTPRLMTKN--LPSYWHGWSPD------GKSFTYCGIRDQVFDIYSMDIDSG---VETRL---THGEGRNDGPDYSP 182 (297)
T ss_dssp TTCCCCEECCSS--SSEEEEEECTT------SSEEEEEEEETTEEEEEEEETTTC---CEEEC---CCSSSCEEEEEECT
T ss_pred CCCCceEEeecC--CCccceEECCC------CCEEEEEECCCCceEEEEEECCCC---cceEc---ccCCCccccceECC
Confidence 656666776643 35899999843 12455 456677544444332211 12222 22235688888852
Q ss_pred eccCCCceEEEEEEC---CCeEEEEe
Q 001978 176 ASLSNGTRYYVMAVT---PTRLYSFT 198 (987)
Q Consensus 176 ~~~~~~~~~~i~ast---~~rly~f~ 198 (987)
+.+.+++++. ..++|.+.
T Consensus 183 -----dg~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 183 -----DGRWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp -----TSSEEEEEECTTSSCEEEEEE
T ss_pred -----CCCEEEEEecCCCCccEEEEC
Confidence 2345666553 34666553
No 177
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.10 E-value=1.7 Score=45.95 Aligned_cols=249 Identities=10% Similarity=-0.055 Sum_probs=118.5
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc--C---CCChHHHHHHhcCcC-hHHH
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN--Y---ILSFEEITLKFISVS-EQDA 438 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~--~---~~~~E~v~lkFl~~~-~~~~ 438 (987)
..++..|+|++|+++++.- .....+...++..++..|+|++|...|.+.. + ...|-.....+...+ +.+.
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHH
Confidence 3477789999999886531 1223445566777788888888888887764 1 112223333344455 5554
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCC-HHHHHHH
Q 001978 439 LRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLD-EATTMKL 517 (987)
Q Consensus 439 L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld-~~tv~~l 517 (987)
-..++..-+..-+..... ...+..+|... .. +.+....+++.+........ .-.+..+
T Consensus 110 A~~~~~~a~~~~~~~~~~-----~~~l~~~~~~~-~~---------------~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 168 (330)
T 3hym_B 110 ARRYLSKATTLEKTYGPA-----WIAYGHSFAVE-SE---------------HDQAMAAYFTAAQLMKGCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHHHHHTTCTTCTHH-----HHHHHHHHHHH-TC---------------HHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHH-----HHHHHHHHHHc-cC---------------HHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 445555544433322221 12333344321 11 11112222222222111100 0012234
Q ss_pred HHHcCChhHHHHHHHhH--------hhHHHHHHHHHhcccHHHHHHHHhCC-------------CCchhhHHhhHHHHHh
Q 001978 518 LESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP-------------AVPIDLQYKFAPDLIM 576 (987)
Q Consensus 518 l~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~l~~~-------------~~~~~li~k~~~~Ll~ 576 (987)
+...|+.++++.+.+.. .-+..+...|...|+|++|++++.+. +.....+...+..+..
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 44556666666655542 22345566777788888887776431 1112344455555443
Q ss_pred -HChHHHHHHHHcCCCCCCCcch--hhhhh-cCCCCCCCCChHHHHHHHHHHHhhcCCCChhHHHHHHHHh
Q 001978 577 -LDAYETVESWMTTNNLNPRKLI--PAMMR-YSSEPHAKNETHEVIKYLEFCVHRLHNEDPGVHNLLLSLY 643 (987)
Q Consensus 577 -~~p~~ti~~l~~~~~ld~~~li--p~L~~-~~~~~~~~~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly 643 (987)
...++++..+.+...++|.... -.+-. +... .....+..+++..+...+. ++..+..+...|
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM----GNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH----TCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh----ccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 4556666665433222332211 01100 0000 1345677888777655433 445555554444
No 178
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=94.09 E-value=0.91 Score=56.05 Aligned_cols=151 Identities=13% Similarity=0.136 Sum_probs=92.4
Q ss_pred CCceeEEEEe-CCE-EEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 21 RGVITCMSAG-NDV-IVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 21 ~~~i~~~~v~-nn~-l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
.+.|.+++.. ++. ||+|+..|-|+++|.....+..+....+......|..|..|+.|. +.|.|. +| .+.++..
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~---~G-l~~~~~~ 479 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWLGTL---SA-LVRFNPE 479 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEEEES---SC-EEEEETT
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEEEec---Cc-eeEEeCC
Confidence 3578999885 555 999999888999999545555554321112246799999999886 666665 45 4445544
Q ss_pred CCCceecc------CCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeee------eeCCCCC
Q 001978 99 WSKPRVLS------KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLF------ELNELPE 166 (987)
Q Consensus 99 ~~k~k~L~------klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~------~l~~~~~ 166 (987)
..+.+... .+.+..|.+++.+ +.+.+.+||..| |+.+..... .+ ... .++. .
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~i~~i~~d-------~~g~lWigt~~G-l~~~~~~~~-----~~-~~~~~~~~~~l~~--~ 543 (795)
T 4a2l_A 480 QRSFTTIEKEKDGTPVVSKQITTLFRD-------SHKRLWIGGEEG-LSVFKQEGL-----DI-QKASILPVSNVTK--L 543 (795)
T ss_dssp TTEEEECCBCTTCCBCCCCCEEEEEEC-------TTCCEEEEESSC-EEEEEEETT-----EE-EECCCSCSCGGGG--S
T ss_pred CCeEEEccccccccccCCceEEEEEEC-------CCCCEEEEeCCc-eEEEeCCCC-----eE-EEecCCCCCCCCC--C
Confidence 44443332 2234578899887 245799999976 776655432 12 111 1121 3
Q ss_pred ceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 167 AFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 167 ~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
.|.+|.... . +. +|++|..-|+.|..
T Consensus 544 ~i~~i~~d~----~--g~-lWigT~~Gl~~~d~ 569 (795)
T 4a2l_A 544 FTNCIYEAS----N--GI-IWVGTREGFYCFNE 569 (795)
T ss_dssp CEEEEEECT----T--SC-EEEEESSCEEEEET
T ss_pred eeEEEEECC----C--CC-EEEEeCCCceeECC
Confidence 466666532 1 22 45566557888864
No 179
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=94.08 E-value=3.9 Score=44.64 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=39.1
Q ss_pred HHHchhhHHHHHHhcCC-----ch---hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD-----PL---QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~~---~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+.+.+. |. ....++...|..++..|+|++|...|.+..
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 74 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 47888999999988652 22 245788899999999999999999887754
No 180
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=94.05 E-value=0.013 Score=53.18 Aligned_cols=36 Identities=17% Similarity=0.489 Sum_probs=28.0
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+.....|.+|...+.. +..+-+|||.||..|+....
T Consensus 12 ~~~~~~C~IC~~~~~~------------------p~~~~~CgH~fC~~Ci~~~~ 47 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFID------------------ATTIIECLHSFCKTCIVRYL 47 (108)
T ss_dssp HGGGTBCTTTSSBCSS------------------EEEETTTCCEEEHHHHHHHH
T ss_pred cCCcCCCccCChHHhC------------------cCEeCCCCChhhHHHHHHHH
Confidence 3456789999877655 55445999999999998775
No 181
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.05 E-value=1.1 Score=47.36 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 392 QVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 392 ~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+....|..++..|+|++|.+.|.+..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l 49 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVM 49 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567788999999999999999998864
No 182
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=94.02 E-value=0.11 Score=51.57 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=30.4
Q ss_pred cccccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 827 YAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 827 ~~~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
...+...-.|++|+..+.. |++. ||||+|-..|+....
T Consensus 100 ~~~ip~~f~CPI~~elm~D------------------PV~~-~~Ghtfer~~I~~~l 137 (179)
T 2f42_A 100 KREIPDYLCGKISFELMRE------------------PCIT-PSGITYDRKDIEEHL 137 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSS------------------EEEC-TTSCEEEHHHHHHHH
T ss_pred ccCCcHhhcccCccccCCC------------------CeEC-CCCCEECHHHHHHHH
Confidence 3456667899999987665 5555 999999999998876
No 183
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=93.97 E-value=0.027 Score=51.62 Aligned_cols=52 Identities=35% Similarity=0.587 Sum_probs=29.8
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
.++..|.+|...+...... ..........+.....+-+|||.||..|+...+
T Consensus 23 ~~~~~C~ICl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl 74 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGY-SDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMY 74 (114)
T ss_dssp CCSCEETTTTEETTSCCST-TTTCCCSSSCSSCCEEESSSCCEECHHHHHHHH
T ss_pred CCCCcCccCChhhcCcccc-cccccccccCcccceecCCCCCcccHHHHHHHH
Confidence 3457899999888652110 000000000111234467899999999998765
No 184
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=93.97 E-value=1.1 Score=46.24 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh
Q 001978 393 VYLVQAEAAFATKDFHRAASFYAKI 417 (987)
Q Consensus 393 V~~~~~~~l~~~g~y~~Aa~~~~~~ 417 (987)
++...|..++..|+|++|...|.+.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~a 103 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSV 103 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444455555555555555555443
No 185
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=93.93 E-value=0.014 Score=49.02 Aligned_cols=35 Identities=23% Similarity=0.673 Sum_probs=27.3
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEc-CCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFP-CGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFp-CgH~fH~~CL~~~~ 883 (987)
+.....|.+|...+.. +. +.+ |||.||..|+....
T Consensus 12 ~~~~~~C~IC~~~~~~------------------p~-~~~~CgH~fC~~Ci~~~~ 47 (74)
T 2yur_A 12 IPDELLCLICKDIMTD------------------AV-VIPCCGNSYCDECIRTAL 47 (74)
T ss_dssp SCGGGSCSSSCCCCTT------------------CE-ECSSSCCEECTTHHHHHH
T ss_pred CCCCCCCcCCChHHhC------------------Ce-EcCCCCCHHHHHHHHHHH
Confidence 4456789999876655 44 478 99999999998775
No 186
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=93.91 E-value=0.0091 Score=53.36 Aligned_cols=34 Identities=18% Similarity=0.549 Sum_probs=26.7
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
....|.+|...+.. +.+..+|||.||..|+....
T Consensus 21 ~~~~C~IC~~~~~~------------------p~~~~~CgH~fC~~Ci~~~~ 54 (99)
T 2y43_A 21 DLLRCGICFEYFNI------------------AMIIPQCSHNYCSLCIRKFL 54 (99)
T ss_dssp HHTBCTTTCSBCSS------------------EEECTTTCCEEEHHHHHHHH
T ss_pred CCCCcccCChhhCC------------------cCEECCCCCHhhHHHHHHHH
Confidence 34689999877655 54445899999999998775
No 187
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=93.87 E-value=0.42 Score=51.36 Aligned_cols=143 Identities=8% Similarity=0.104 Sum_probs=80.6
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCc
Q 001978 23 VITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKP 102 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~ 102 (987)
...+.++.++.+++|+.+|.|+++|...........+ ...+..+..|+.|. +.+.+. ++..|.++.. .+.
T Consensus 99 ~~~~~~~~~~~l~v~t~~~~l~~~d~~g~~~~~~~~~-----~~~~~~~~~~~~g~-l~vgt~---~~~l~~~d~~-g~~ 168 (330)
T 3hxj_A 99 IVSDFTIFEDILYVTSMDGHLYAINTDGTEKWRFKTK-----KAIYATPIVSEDGT-IYVGSN---DNYLYAINPD-GTE 168 (330)
T ss_dssp --CCEEEETTEEEEECTTSEEEEECTTSCEEEEEECS-----SCCCSCCEECTTSC-EEEECT---TSEEEEECTT-SCE
T ss_pred cccCceEECCEEEEEecCCEEEEEcCCCCEEEEEcCC-----CceeeeeEEcCCCE-EEEEcC---CCEEEEECCC-CCE
Confidence 3456667799999999999999999862223333433 23456677888886 677766 5777777765 322
Q ss_pred eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCc
Q 001978 103 RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGT 182 (987)
Q Consensus 103 k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~ 182 (987)
..-..+.+..+.+++.+ ..+.+.+|| |.|+... ..+ +.++........+.++.... .
T Consensus 169 ~~~~~~~~~~~~~~~~d-------~~g~l~v~t--~~l~~~d-~~g-------~~~~~~~~~~~~~~~~~~~~------~ 225 (330)
T 3hxj_A 169 KWRFKTNDAITSAASIG-------KDGTIYFGS--DKVYAIN-PDG-------TEKWNFYAGYWTVTRPAISE------D 225 (330)
T ss_dssp EEEEECSSCCCSCCEEC-------TTCCEEEES--SSEEEEC-TTS-------CEEEEECCSSCCCSCCEECT------T
T ss_pred eEEEecCCCceeeeEEc-------CCCEEEEEe--CEEEEEC-CCC-------cEEEEEccCCcceeceEECC------C
Confidence 11111223344444443 235799999 6677765 221 11222221113466666531 1
Q ss_pred eEEEEEECCCeEEEEe
Q 001978 183 RYYVMAVTPTRLYSFT 198 (987)
Q Consensus 183 ~~~i~ast~~rly~f~ 198 (987)
+.+.+++....||.|.
T Consensus 226 g~l~v~t~~~gl~~~~ 241 (330)
T 3hxj_A 226 GTIYVTSLDGHLYAIN 241 (330)
T ss_dssp SCEEEEETTTEEEEEC
T ss_pred CeEEEEcCCCeEEEEC
Confidence 2344444467788663
No 188
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.85 E-value=0.021 Score=49.09 Aligned_cols=35 Identities=23% Similarity=0.622 Sum_probs=27.6
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+.....|.+|...+.. +. +.+|||.||..|+....
T Consensus 16 ~~~~~~C~IC~~~~~~------------------p~-~~~CgH~fC~~Ci~~~~ 50 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE------------------PV-SADCNHSFCRACITLNY 50 (85)
T ss_dssp CCTTTSCTTTCSCCSS------------------CE-ECTTSCCBCHHHHHHHH
T ss_pred CccCCCCcCCChhhCc------------------ce-eCCCCCHHHHHHHHHHH
Confidence 3456689999877654 44 67999999999998775
No 189
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=93.84 E-value=0.026 Score=51.12 Aligned_cols=52 Identities=21% Similarity=0.409 Sum_probs=31.3
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
....|++|...+...... -..+....++...+.+.-+|||.||..|+..-+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~-C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIE-CQANQASATSEECTVAWGVCNHAFHFHCISRWLK 87 (106)
T ss_dssp CSCCCSSSCSCTTSCCTT-HHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT
T ss_pred CCCCCccCChhHhCcCch-hhccccccCCccceEeecccCcEECHHHHHHHHH
Confidence 357899998887763210 0000001122233677789999999999988753
No 190
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.74 E-value=0.013 Score=47.90 Aligned_cols=35 Identities=26% Similarity=0.633 Sum_probs=27.1
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+.....|.+|...+.. ++. .+|||.||..|+.+.+
T Consensus 12 ~~~~~~C~IC~~~~~~------------------p~~-~~CgH~fC~~Ci~~~~ 46 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCS------------------PKQ-TECGHRFCESCMAALL 46 (66)
T ss_dssp CCCCEECTTTCCEESS------------------CCC-CSSSCCCCHHHHHHHH
T ss_pred CCcCCCCCCCChHhcC------------------eeE-CCCCCHHHHHHHHHHH
Confidence 3445689999877655 433 5999999999998775
No 191
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=93.74 E-value=1.2 Score=50.67 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=68.6
Q ss_pred CceeEEEEeC---CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 22 GVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 22 ~~i~~~~v~n---n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
+.|++++.+. +.++.|..+|+|..||+ ....+... .+ ....|..+-.+|.|.++++++. +|....+..
T Consensus 150 ~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~-~~----~~~~v~~v~wspdg~~lasgs~---dg~v~iwd~ 221 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT-LP----STVAVTSVCWSPKGKQLAVGKQ---NGTVVQYLP 221 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE-EC----GGGCEEEEEECTTSSCEEEEET---TSCEEEECT
T ss_pred CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec-cC----CCCceeEEEEcCCCCEEEEEcC---CCcEEEEcc
Confidence 4699999974 57899999999999999 44222111 11 1367999999999999999888 898888776
Q ss_pred CCCCceeccCCC------CceEEEEeecCCCCCCCCcceEEEEcC
Q 001978 98 KWSKPRVLSKLK------GLVVNAVAWNRQQITEASTKEIILGTD 136 (987)
Q Consensus 98 ~~~k~k~L~klk------g~~i~sVaw~~~~~~~~st~~iLiGt~ 136 (987)
.....+.+..-. ...|.+|+|++ .+.++++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~v~~v~w~~-------~~~~l~~~~ 259 (434)
T 2oit_A 222 TLQEKKVIPCPPFYESDHPVRVLDVLWIG-------TYVFAIVYA 259 (434)
T ss_dssp TCCEEEEECCCTTCCTTSCEEEEEEEEEE-------TTEEEEEEE
T ss_pred CCcccccccCCcccCCCCceeEEEEEEec-------CceEEEEEc
Confidence 522222222111 13899999983 236776544
No 192
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=93.70 E-value=0.019 Score=55.59 Aligned_cols=33 Identities=21% Similarity=0.459 Sum_probs=25.8
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
..-.|.+|...+.. |. +.||||.||..|+....
T Consensus 77 ~~~~C~IC~~~~~~------------------pv-~~~CgH~fC~~Ci~~~~ 109 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ------------------PV-TTECFHNVCKDCLQRSF 109 (150)
T ss_dssp HHTBCTTTSSBCSS------------------EE-ECTTSCEEEHHHHHHHH
T ss_pred cCCEeecCChhhcC------------------CE-EcCCCCchhHHHHHHHH
Confidence 34589999876654 44 46999999999998765
No 193
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.65 E-value=1.1 Score=47.92 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=36.0
Q ss_pred HHHHchhhHHHHHHhcCC-----chhHhHHHHHHHHHHHhcCCHHHHHHHHHh
Q 001978 369 KVYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAK 416 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~-----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~ 416 (987)
+.++..|.|..|+..++. |..........+..++..|+|++|...+..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~ 59 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP 59 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc
Confidence 457888999999998642 333344556678899999999999976643
No 194
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=93.57 E-value=8.4 Score=40.44 Aligned_cols=104 Identities=10% Similarity=-0.007 Sum_probs=62.3
Q ss_pred ceeEEEEe-CCEEEEE--------ecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 23 VITCMSAG-NDVIVLG--------TSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 23 ~i~~~~v~-nn~l~~~--------~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
...++++. ++.+|++ +.+|.|+++|....++..+..|........+..+.+||.+..++|++. .+..+
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~---~~~l~ 95 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM---RLGLL 95 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---TTEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC---CCCEE
Confidence 34677774 4567766 788999999983344444443211111246889999999345677664 34455
Q ss_pred EEecCCCCceec-cC----CCCceEEEEeecCCCCCCCCcceEEEEcCC
Q 001978 94 YTHAKWSKPRVL-SK----LKGLVVNAVAWNRQQITEASTKEIILGTDT 137 (987)
Q Consensus 94 Y~~~~~~k~k~L-~k----lkg~~i~sVaw~~~~~~~~st~~iLiGt~~ 137 (987)
.++.. .+.+.+ .. ..+..+.++++++ .+.+.+++..
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-------~g~l~v~~~~ 136 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-------EGNLWITAPA 136 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECT-------TSCEEEEECB
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECC-------CCCEEEEecC
Confidence 56555 444444 21 1224578889983 2468888753
No 195
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.56 E-value=2.8 Score=46.81 Aligned_cols=29 Identities=14% Similarity=0.032 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 390 RDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 390 ~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
-...+...|..++..|+|++|...|.+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l 53 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAV 53 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34567788999999999999999998865
No 196
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=93.53 E-value=0.012 Score=52.63 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=28.6
Q ss_pred cccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 831 DRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 831 ~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
.....|.+|...+.. +..+.+|||.||..|+...+.
T Consensus 20 ~~~~~C~IC~~~~~~------------------p~~~~~CgH~FC~~Ci~~~~~ 55 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD------------------ARLCPHCSKLCCFSCIRRWLT 55 (100)
T ss_dssp HHHTBCTTTCSBCSS------------------EEECTTTCCEEEHHHHHHHHH
T ss_pred CCCCCCccCCccccC------------------ccccCCCCChhhHHHHHHHHH
Confidence 345689999987765 555589999999999988753
No 197
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=93.44 E-value=3.4 Score=43.82 Aligned_cols=162 Identities=9% Similarity=0.104 Sum_probs=86.8
Q ss_pred CceeEEEEeC-CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC---------CCcc
Q 001978 22 GVITCMSAGN-DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS---------GGAE 91 (987)
Q Consensus 22 ~~i~~~~v~n-n~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~---------~~g~ 91 (987)
+.+.+++... +-+++++ .+.|+++|+.......+.-+........++.+.+||.|. +.+++... ..|.
T Consensus 54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~ 131 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGA 131 (297)
T ss_dssp SCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEE
T ss_pred CceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcE
Confidence 4678888863 3577887 568999999433343332221111235688999999998 55554210 1245
Q ss_pred EEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceE-EEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceee
Q 001978 92 TFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEI-ILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMG 170 (987)
Q Consensus 92 ~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~i-LiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~g 170 (987)
.|.+... .+...+.. .......++|+++. +.+ +..+..+.|+.+.++..++.-..-+.+..++..++...|
T Consensus 132 l~~~d~~-g~~~~~~~-~~~~pngi~~spdg------~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g 203 (297)
T 3g4e_A 132 LYSLFPD-HHVKKYFD-QVDISNGLDWSLDH------KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDG 203 (297)
T ss_dssp EEEECTT-SCEEEEEE-EESBEEEEEECTTS------CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEE
T ss_pred EEEEECC-CCEEEEee-ccccccceEEcCCC------CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCe
Confidence 6666543 23222221 11245789998431 134 445667889988875322211112333444432245788
Q ss_pred EEEEeeccCCCceEEEEEE-CCCeEEEEec
Q 001978 171 LQMETASLSNGTRYYVMAV-TPTRLYSFTG 199 (987)
Q Consensus 171 i~~~~~~~~~~~~~~i~as-t~~rly~f~g 199 (987)
+.+.. + +.+.+++ ...+++.|.-
T Consensus 204 ~~~d~-----~-G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 204 MCIDA-----E-GKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp EEEBT-----T-SCEEEEEETTTEEEEECT
T ss_pred eEECC-----C-CCEEEEEcCCCEEEEEcC
Confidence 88752 1 2222222 3567887753
No 198
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=93.31 E-value=1.1 Score=52.82 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=91.2
Q ss_pred ceeEEEEe--CCEEEEEecCCeEEEEeCCCCCc--------eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 23 VITCMSAG--NDVIVLGTSKGWLIRHDFGAGDS--------YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 23 ~i~~~~v~--nn~l~~~~~~g~l~ridl~~~~~--------~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
.+.+++.+ ++.|+.|..+|+|..+|+..... ..++..... -...|..+-..|.| +++++. ++..
T Consensus 131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g-h~~~V~sVawSPdg--Laass~---D~tV 204 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAG-SKDWVTHIVWYEDV--LVAALS---NNSV 204 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTT-CCCCEEEEEEETTE--EEEEET---TCCE
T ss_pred cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccc-ccccEEEEEEcCCc--EEEEeC---CCeE
Confidence 48888855 55999999999999999933322 333332221 13689999999999 555544 6777
Q ss_pred EEEecCCCCce----eccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCce
Q 001978 93 FYTHAKWSKPR----VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAF 168 (987)
Q Consensus 93 ~Y~~~~~~k~k----~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I 168 (987)
+-++....+.+ .|.......|.+|+|. . .+|+.+.+|.|....+..+ ....+... -.++|
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g--------~~LASa~~~tIkLWd~~~~------~~~~~~~g-h~~~V 268 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV-D--------YKVVLTCPGYVHKIDLKNY------SISSLKTG-SLENF 268 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSSCCCCEEEE-T--------TEEEEECSSEEEEEETTTT------EEEEEECS-CCSCC
T ss_pred EEEECCCCccccceeeecccccCcEEEEEEE-C--------CEEEEEeCCeEEEEECCCC------eEEEEEcC-CCceE
Confidence 77777665532 2432233469999997 1 3444445688888877654 11123332 23679
Q ss_pred eeEEEEeeccCCCceEEEEEE-CCCeEEEE
Q 001978 169 MGLQMETASLSNGTRYYVMAV-TPTRLYSF 197 (987)
Q Consensus 169 ~gi~~~~~~~~~~~~~~i~as-t~~rly~f 197 (987)
.+|.+ |.+++...++++. +++|++.+
T Consensus 269 ~~va~---~~s~d~~~La~a~edG~klw~~ 295 (588)
T 2j04_A 269 HIIPL---NHEKESTILLMSNKTSYKVLLE 295 (588)
T ss_dssp CEEEE---TTCSSCEEEEECSSCEEEEEES
T ss_pred EEEEe---eeCCCCCEEEEEcCCCCEEEee
Confidence 99887 1113334555554 23356644
No 199
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=93.24 E-value=0.81 Score=56.38 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=92.9
Q ss_pred CCceeEEEEeC-CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 21 RGVITCMSAGN-DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 21 ~~~i~~~~v~n-n~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
.+.|.+++... +.||+|+.+|-|+++|........+.-+ .......|..|+.|+.|. +.|.|. ++-.++++...
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~d~~g~-lWigt~---~~Gl~~~~~~~ 436 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKEN-RELLSNSVLCSLKDSEGN-LWFGTY---LGNISYYNTRL 436 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC------CCCSBEEEEEECTTSC-EEEEET---TEEEEEECSSS
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCC-CCCCCcceEEEEECCCCC-EEEEec---cCCEEEEcCCC
Confidence 35689998875 7899999888899999832223333111 112246799999999885 666665 45566777655
Q ss_pred CCceecc--CCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCC---CCCceeeEEEE
Q 001978 100 SKPRVLS--KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNE---LPEAFMGLQME 174 (987)
Q Consensus 100 ~k~k~L~--klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~---~~~~I~gi~~~ 174 (987)
.+++... .+.+..|.+++.++ .+.+.+||..| |+.+....+ .++.....+. ....|.+|...
T Consensus 437 ~~~~~~~~~~~~~~~v~~i~~d~-------~g~lwigt~~G-l~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~i~~d 503 (781)
T 3v9f_A 437 KKFQIIELEKNELLDVRVFYEDK-------NKKIWIGTHAG-VFVIDLASK-----KVIHHYDTSNSQLLENFVRSIAQD 503 (781)
T ss_dssp CEEEECCSTTTCCCCEEEEEECT-------TSEEEEEETTE-EEEEESSSS-----SCCEEECTTTSSCSCSCEEEEEEC
T ss_pred CcEEEeccCCCCCCeEEEEEECC-------CCCEEEEECCc-eEEEeCCCC-----eEEecccCcccccccceeEEEEEc
Confidence 5555543 23456799998872 35799999977 766654332 1222211110 01347777654
Q ss_pred eeccCCCceEEEEEEC-CCeEEEEec
Q 001978 175 TASLSNGTRYYVMAVT-PTRLYSFTG 199 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast-~~rly~f~g 199 (987)
. .+. +|+.| ..-||.|..
T Consensus 504 ~------~g~-lWigt~~~Gl~~~~~ 522 (781)
T 3v9f_A 504 S------EGR-FWIGTFGGGVGIYTP 522 (781)
T ss_dssp T------TCC-EEEEESSSCEEEECT
T ss_pred C------CCC-EEEEEcCCCEEEEeC
Confidence 2 122 44455 367887764
No 200
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.20 E-value=0.026 Score=48.27 Aligned_cols=32 Identities=31% Similarity=0.695 Sum_probs=25.6
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
...|.+|...+.. ++ +.+|||.||..|+....
T Consensus 15 ~~~C~IC~~~~~~------------------p~-~~~CgH~fC~~Ci~~~~ 46 (81)
T 2csy_A 15 PFRCFICRQAFQN------------------PV-VTKCRHYFCESCALEHF 46 (81)
T ss_dssp CSBCSSSCSBCCS------------------EE-ECTTSCEEEHHHHHHHH
T ss_pred CCCCcCCCchhcC------------------ee-EccCCCHhHHHHHHHHH
Confidence 4579999877644 43 57999999999998765
No 201
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.09 E-value=0.025 Score=46.77 Aligned_cols=33 Identities=24% Similarity=0.777 Sum_probs=25.3
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAH 882 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~ 882 (987)
+.....|.+|...+ . . ++.||||.||..|+...
T Consensus 12 ~~~~~~C~IC~~~~-------~------------~-~~~~CgH~fc~~Ci~~~ 44 (70)
T 2ecn_A 12 LTDEEECCICMDGR-------A------------D-LILPCAHSFCQKCIDKW 44 (70)
T ss_dssp CCCCCCCSSSCCSC-------C------------S-EEETTTEEECHHHHHHS
T ss_pred CCCCCCCeeCCcCc-------c------------C-cccCCCCcccHHHHHHH
Confidence 34567899997542 1 4 77899999999999764
No 202
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.99 E-value=0.04 Score=46.20 Aligned_cols=34 Identities=21% Similarity=0.611 Sum_probs=25.6
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
....|++|...+.. +. + .+ .|+|.||..|+.+.+
T Consensus 14 ~i~~C~IC~~~i~~-g~--~-----------C~----~C~h~fH~~Ci~kWl 47 (74)
T 2ct0_A 14 AVKICNICHSLLIQ-GQ--S-----------CE----TCGIRMHLPCVAKYF 47 (74)
T ss_dssp SSCBCSSSCCBCSS-SE--E-----------CS----SSCCEECHHHHHHHS
T ss_pred CCCcCcchhhHccc-CC--c-----------cC----CCCchhhHHHHHHHH
Confidence 34689999988764 11 1 12 899999999999876
No 203
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.97 E-value=0.017 Score=49.60 Aligned_cols=35 Identities=29% Similarity=0.784 Sum_probs=27.1
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+.....|.+|...+.. +. +.+|||.||..|+....
T Consensus 16 ~~~~~~C~IC~~~~~~------------------p~-~~~CgH~fC~~Ci~~~~ 50 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ------------------PL-SLDCGHSFCQACLTANH 50 (85)
T ss_dssp CCCCCCCTTTCSCCSS------------------CB-CCSSSCCBCTTHHHHHH
T ss_pred ccCCCCCCCCCcccCC------------------ce-eCCCCCHHHHHHHHHHH
Confidence 4456789999887654 33 35999999999998765
No 204
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=92.95 E-value=5.4 Score=42.59 Aligned_cols=109 Identities=6% Similarity=0.119 Sum_probs=67.0
Q ss_pred ceeEEEEe--CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC----ccEEEEe
Q 001978 23 VITCMSAG--NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG----AETFYTH 96 (987)
Q Consensus 23 ~i~~~~v~--nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~----g~~~Y~~ 96 (987)
...++++. +++.+.++.+|.|+++|.....+..+..+. ...+..+.+||.|. +++++.. + +..+.++
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~i~~~~dg~-l~v~~~~--~~~~~~~i~~~d 118 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH----KANPAAIKIHKDGR-LFVCYLG--DFKSTGGIFAAT 118 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECS----SSSEEEEEECTTSC-EEEEECT--TSSSCCEEEEEC
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC----CCCcceEEECCCCc-EEEEeCC--CCCCCceEEEEe
Confidence 35667775 334446788899999999444444443221 35789999999996 5555430 2 3566666
Q ss_pred cCCCCce-ecc-CCCCceEEEEeecCCCCCCCCcceEEEEcCC-------CcEEEEEe
Q 001978 97 AKWSKPR-VLS-KLKGLVVNAVAWNRQQITEASTKEIILGTDT-------GQLHEMAV 145 (987)
Q Consensus 97 ~~~~k~k-~L~-klkg~~i~sVaw~~~~~~~~st~~iLiGt~~-------G~i~e~~i 145 (987)
....+.+ .+. ...+..+.+++|++. +.+++++.. |.||.+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~-------g~l~v~~~~~~~~~~~~~l~~~~~ 169 (333)
T 2dg1_A 119 ENGDNLQDIIEDLSTAYCIDDMVFDSK-------GGFYFTDFRGYSTNPLGGVYYVSP 169 (333)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTT-------SCEEEEECCCBTTBCCEEEEEECT
T ss_pred CCCCEEEEEEccCccCCcccceEECCC-------CCEEEEeccccccCCCceEEEEeC
Confidence 5555444 222 123457899999832 468888763 55665543
No 205
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=92.91 E-value=5 Score=41.71 Aligned_cols=150 Identities=7% Similarity=0.001 Sum_probs=88.2
Q ss_pred CceeEEEEe-CCEEEEEec-CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 22 GVITCMSAG-NDVIVLGTS-KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 22 ~~i~~~~v~-nn~l~~~~~-~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
..+.++++. ++.+|++.. +|.|+++|.. ..+..+.++.. ...+..|.+||.|.. .+++. +++..+.+...
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~---~~~~~~i~~~~~g~l-~v~~~--~~~~i~~~~~~- 86 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTP---DAKVMCLTISSDGEV-WFTEN--AANKIGRITKK- 86 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSST---TCCEEEEEECTTSCE-EEEET--TTTEEEEECTT-
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcc---cCceeeEEECCCCCE-EEeCC--CCCeEEEECCC-
Confidence 467899886 457888887 6899999996 55666665522 357899999999974 44433 14666666544
Q ss_pred CCceeccC-CCCceEEEEeecCCCCCCCCcceEEEEcC-CCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 100 SKPRVLSK-LKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 100 ~k~k~L~k-lkg~~i~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
.+.+...- ..+..+.++++++ .+.+.+++. .|.|+...... .++. +.++.....+.+|.+..
T Consensus 87 g~~~~~~~~~~~~~~~~i~~~~-------~g~l~v~~~~~~~i~~~d~~g------~~~~-~~~~~~~~~~~~i~~~~-- 150 (299)
T 2z2n_A 87 GIIKEYTLPNPDSAPYGITEGP-------NGDIWFTEMNGNRIGRITDDG------KIRE-YELPNKGSYPSFITLGS-- 150 (299)
T ss_dssp SCEEEEECSSTTCCEEEEEECT-------TSCEEEEETTTTEEEEECTTC------CEEE-EECSSTTCCEEEEEECT--
T ss_pred CcEEEEeCCCcCCCceeeEECC-------CCCEEEEecCCceEEEECCCC------CEEE-ecCCCCCCCCceEEEcC--
Confidence 23322220 1345788899883 236788764 56777654421 1222 23332123467777642
Q ss_pred cCCCceEEEEEEC-CCeEEEEec
Q 001978 178 LSNGTRYYVMAVT-PTRLYSFTG 199 (987)
Q Consensus 178 ~~~~~~~~i~ast-~~rly~f~g 199 (987)
+ +.+.++++ ...++.|..
T Consensus 151 ---~-g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 151 ---D-NALWFTENQNNAIGRITE 169 (299)
T ss_dssp ---T-SCEEEEETTTTEEEEECT
T ss_pred ---C-CCEEEEeCCCCEEEEEcC
Confidence 1 22333333 467887754
No 206
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=92.77 E-value=1.2 Score=48.17 Aligned_cols=46 Identities=11% Similarity=0.186 Sum_probs=24.3
Q ss_pred chhhHHHHHH-hcC--------CchhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 373 DMKEYAAALA-NCR--------DPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 373 ~~~~fe~Al~-~~~--------~~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
-.|+|++|++ ..+ +|..........|..++..|+|++|...|.+..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 91 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV 91 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3467788776 322 122223456677888888888888888888765
No 207
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=92.75 E-value=0.019 Score=48.74 Aligned_cols=35 Identities=20% Similarity=0.684 Sum_probs=26.4
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+.....|.+|...+.. +. +.||||.||..|+.+..
T Consensus 9 ~~~~~~C~IC~~~~~~------------------p~-~l~CgH~fC~~Ci~~~~ 43 (79)
T 2egp_A 9 VQEEVTCPICLELLTE------------------PL-SLDCGHSLCRACITVSN 43 (79)
T ss_dssp CCCCCEETTTTEECSS------------------CC-CCSSSCCCCHHHHSCCC
T ss_pred cccCCCCcCCCcccCC------------------ee-ECCCCCHHHHHHHHHHH
Confidence 4456789999877654 33 36999999999997554
No 208
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=92.72 E-value=1.6 Score=47.55 Aligned_cols=50 Identities=4% Similarity=-0.067 Sum_probs=40.8
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..++..|+|++|+++.+.. ..-..++...|..++..|+|++|...|.+..
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3588899999999997632 1235678889999999999999999998875
No 209
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=92.65 E-value=1.1 Score=54.24 Aligned_cols=98 Identities=9% Similarity=0.016 Sum_probs=63.8
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC---
Q 001978 23 VITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW--- 99 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~--- 99 (987)
.|++++++.+-.++...+|.|+.+|+...+...+.-+ ...+..+-++|.|.+++.+ . ++..|.+....
T Consensus 83 ~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~SpdG~~la~~-~---~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLFDT-----NEETASLDFSPVGDRVAYV-R---NHNLYIARGGKLGE 153 (706)
T ss_dssp CCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEECC-----TTCCTTCEECTTSSEEEEE-E---TTEEEEEECBCTTS
T ss_pred CceeEEECCCCeEEEEECCEEEEEECCCCceEEccCC-----cccccCCcCCCCCCEEEEE-E---CCeEEEEecCcccc
Confidence 5899999876334444669999999933333222211 2456778889999998875 4 58888888766
Q ss_pred --CCceeccCCCCce--------------EEEEeecCCCCCCCCcceEEEEc
Q 001978 100 --SKPRVLSKLKGLV--------------VNAVAWNRQQITEASTKEIILGT 135 (987)
Q Consensus 100 --~k~k~L~klkg~~--------------i~sVaw~~~~~~~~st~~iLiGt 135 (987)
.+.+.+....+.. +.+++|+++ .+.|+.++
T Consensus 154 ~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD------g~~la~~~ 199 (706)
T 2z3z_A 154 GMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK------GSCLAFYR 199 (706)
T ss_dssp CCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT------SSEEEEEE
T ss_pred cCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCC------CCEEEEEE
Confidence 6666665432222 489999943 22466654
No 210
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=92.50 E-value=4.1 Score=43.24 Aligned_cols=159 Identities=9% Similarity=0.079 Sum_probs=88.0
Q ss_pred ceeEEEEeCC--EEEEEec-CCeEEEEeC-CCCCceeeE-cCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 23 VITCMSAGND--VIVLGTS-KGWLIRHDF-GAGDSYDID-LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 23 ~i~~~~v~nn--~l~~~~~-~g~l~ridl-~~~~~~~~~-l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.+++++.+ .++++.. +|.|..+|+ ++.....+. ++ ....+..+.++|.|.+++++.. +++..+.+..
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~ 158 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE----GLDGCHSANISPDNRTLWVPAL--KQDRICLFTV 158 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC----CCTTBCCCEECTTSSEEEEEEG--GGTEEEEEEE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc----CCCCceEEEECCCCCEEEEecC--CCCEEEEEEe
Confidence 5688888754 5666654 788999999 332211121 12 1245788889999999988862 1566666655
Q ss_pred CC-CCce-----eccCCCCceEEEEeecCCCCCCCCcceEEEEc-CCCcEEEEEeccCccccceeeeeeeeCCC---CCc
Q 001978 98 KW-SKPR-----VLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDEKDKREKYIKLLFELNEL---PEA 167 (987)
Q Consensus 98 ~~-~k~k-----~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~~~~~e~~~k~v~~l~~~---~~~ 167 (987)
.. .+.. .+.--.|..+.+++|++. .+.+++++ .+|.|....++...+.....+.+-.++.. ...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd------g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 232 (343)
T 1ri6_A 159 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPN------EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW 232 (343)
T ss_dssp CTTSCEEEEEEEEEECSTTCCEEEEEECTT------SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred cCCCceeeecccccccCCCCCcceEEECCC------CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCC
Confidence 44 3332 122124567889999843 12354444 67888888775422222222333223321 123
Q ss_pred eeeEEEEeeccCCCceEEEEEE-CCCeEEEEe
Q 001978 168 FMGLQMETASLSNGTRYYVMAV-TPTRLYSFT 198 (987)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~as-t~~rly~f~ 198 (987)
+.++.|.. +.++++++. ....++.|.
T Consensus 233 ~~~i~~s~-----dg~~l~v~~~~~~~i~v~d 259 (343)
T 1ri6_A 233 AADIHITP-----DGRHLYACDRTASLITVFS 259 (343)
T ss_dssp EEEEEECT-----TSSEEEEEETTTTEEEEEE
T ss_pred ccceEECC-----CCCEEEEEecCCCEEEEEE
Confidence 55677742 224554444 355666554
No 211
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=92.18 E-value=0.56 Score=57.59 Aligned_cols=111 Identities=17% Similarity=0.203 Sum_probs=74.1
Q ss_pred CCceeEEEEe-CCEEEEEecCCeEEEEeCCCCCceeeEcCCCC-CCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 21 RGVITCMSAG-NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGR-PGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 21 ~~~i~~~~v~-nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~-~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
...|.++... ++.||+|+.+| |+++|........+..|... .....|..|+.|+.|..+.|.|. +| .|+++..
T Consensus 145 ~~~i~~i~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~---~G-l~~~~~~ 219 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE---GY-LFQYFPS 219 (758)
T ss_dssp CSCEEEEEECTTCCEEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE---EE-EEEEETT
T ss_pred CCeEEEEEEcCCCCEEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC---CC-CeEEcCC
Confidence 3568888876 78999999865 88999843444444444221 11245899999999888888887 44 5566655
Q ss_pred CCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEE
Q 001978 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMA 144 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~ 144 (987)
..+.+....+.+..|.+++-+ +.+.+.|||.+| |+.+.
T Consensus 220 ~~~~~~~~~l~~~~i~~i~~d-------~~g~lWigT~~G-l~~~~ 257 (758)
T 3ott_A 220 TGQIKQTEAFHNNSIKSLALD-------GNGDLLAGTDNG-LYVYH 257 (758)
T ss_dssp TTEEEEEEEEEEEEEEEEEEC-------TTCCEEEEETTE-EEEEC
T ss_pred CCeEEeccCCCCCeEEEEEEc-------CCCCEEEEeCCc-eeEEe
Confidence 444444433444568888876 246899999888 55543
No 212
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.09 E-value=0.047 Score=46.66 Aligned_cols=35 Identities=26% Similarity=0.645 Sum_probs=25.7
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCC-----ChhHHHhHHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCG-----HAFHAQCLIAHV 883 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCg-----H~fH~~CL~~~~ 883 (987)
....|.+|...... . .++ +-||+ |.||.+||..-+
T Consensus 14 ~~~~C~IC~~~~~~-----~-----------~~l-~~pC~C~Gs~h~fH~~Cl~~Wl 53 (80)
T 2d8s_A 14 SQDICRICHCEGDD-----E-----------SPL-ITPCHCTGSLHFVHQACLQQWI 53 (80)
T ss_dssp TSCCCSSSCCCCCS-----S-----------SCE-ECSSSCCSSSCCEETTHHHHHH
T ss_pred CCCCCeEcCccccC-----C-----------Cee-EeccccCCcCCeeCHHHHHHHH
Confidence 35689999765432 1 154 57996 999999998776
No 213
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=91.94 E-value=0.29 Score=52.64 Aligned_cols=108 Identities=8% Similarity=0.077 Sum_probs=66.3
Q ss_pred CceeEEEEeCC-EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 001978 22 GVITCMSAGND-VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (987)
Q Consensus 22 ~~i~~~~v~nn-~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (987)
..+.++++.++ .+|+|+.+|.|+++|........+..+. ..+..+.+|+.| ++.+++. +|..+.++.. .
T Consensus 215 ~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~g-~l~v~t~---~ggl~~~d~~-g 284 (330)
T 3hxj_A 215 WTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTGK-----RIESSPVIGNTD-TIYFGSY---DGHLYAINPD-G 284 (330)
T ss_dssp CCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEECSS-----CCCSCCEECTTS-CEEEECT---TCEEEEECTT-S
T ss_pred cceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeCCC-----CccccceEcCCC-eEEEecC---CCCEEEECCC-C
Confidence 45778888765 9999999999999987444455554432 223345667766 5777776 6667666642 2
Q ss_pred CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEec
Q 001978 101 KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (987)
Q Consensus 101 k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (987)
+...-..+.+..+.+++.+ ..+.+.+||.+|.++....+
T Consensus 285 ~~~~~~~~~~~~~~~~~~d-------~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 285 TEKWNFETGSWIIATPVID-------ENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp CEEEEEECSSCCCSCCEEC-------TTCCEEEECTTSCEEEEEC-
T ss_pred cEEEEEEcCCccccceEEc-------CCCEEEEEcCCCeEEEEecc
Confidence 2111111223334444443 24579999999988876554
No 214
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=91.88 E-value=0.025 Score=48.07 Aligned_cols=37 Identities=19% Similarity=0.488 Sum_probs=27.3
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEc--CCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFP--CGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFp--CgH~fH~~CL~~~~ 883 (987)
+.....|++|-.++.. . +..++| |||.|+..|+.+..
T Consensus 8 ~~~~~~CpICle~~~~-----~------------d~~~~p~~CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEI-----D------------DINFFPCTCGYQICRFCWHRIR 46 (78)
T ss_dssp CCCCCBCTTTCCBCCT-----T------------TTTCCSSTTSCCCCHHHHHHHT
T ss_pred cccCCcCCccCccCcc-----c------------cccccccCCCCCcCHHHHHHHH
Confidence 3455689999997754 2 334566 99999999997653
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=91.78 E-value=13 Score=39.99 Aligned_cols=160 Identities=9% Similarity=0.073 Sum_probs=84.4
Q ss_pred CceeEEEEe-CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC----CCccEEEEe
Q 001978 22 GVITCMSAG-NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS----GGAETFYTH 96 (987)
Q Consensus 22 ~~i~~~~v~-nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~----~~g~~~Y~~ 96 (987)
..+.+++.. ++.+++++.+ .|+++|.....+..+.-.........++.+.+||.|. +.+++... ..+..|.+.
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe
Confidence 457888764 5678888865 4999999333343332111111124688999999998 45554310 125566666
Q ss_pred cCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEE-EcCCCcEEEEEeccCcc-ccceeeeeeeeCCCCCceeeEEEE
Q 001978 97 AKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIIL-GTDTGQLHEMAVDEKDK-REKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 97 ~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLi-Gt~~G~i~e~~i~~~~~-~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
..+.+.+.. ......+++|+++ .+.+.+ .+.++.|+.+.++...+ .-...+.+..++...+...|+.+.
T Consensus 168 --~g~~~~~~~-~~~~~~~i~~s~d------g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d 238 (326)
T 2ghs_A 168 --KGKVTKLFA-DISIPNSICFSPD------GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD 238 (326)
T ss_dssp --TTEEEEEEE-EESSEEEEEECTT------SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC
T ss_pred --CCcEEEeeC-CCcccCCeEEcCC------CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC
Confidence 233333321 1124568899843 123444 45568898887751111 111112223343222446787775
Q ss_pred eeccCCCceEEEEEEC--CCeEEEEec
Q 001978 175 TASLSNGTRYYVMAVT--PTRLYSFTG 199 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast--~~rly~f~g 199 (987)
. + +. +|+++ ..+|+.|..
T Consensus 239 ~-----~-G~-lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 239 A-----E-GH-IWNARWGEGAVDRYDT 258 (326)
T ss_dssp T-----T-SC-EEEEEETTTEEEEECT
T ss_pred C-----C-CC-EEEEEeCCCEEEEECC
Confidence 2 1 22 33344 567887753
No 216
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=91.65 E-value=2.8 Score=47.68 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=40.0
Q ss_pred HHHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..++..|+|++|++.++... .-...+...|..++..|+|++|...|.+..
T Consensus 47 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 47 ACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLS 100 (514)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45788899999999976321 223677889999999999999999998764
No 217
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=91.58 E-value=0.077 Score=58.95 Aligned_cols=32 Identities=25% Similarity=0.570 Sum_probs=24.4
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
...|.+|-.... ..++.||||.||..|+....
T Consensus 332 ~~~C~ICle~~~-------------------~pv~lpCGH~FC~~Ci~~wl 363 (389)
T 2y1n_A 332 FQLCKICAENDK-------------------DVKIEPCGHLMCTSCLTSWQ 363 (389)
T ss_dssp SSBCTTTSSSBC-------------------CEEEETTCCEECHHHHHHHH
T ss_pred CCCCCccCcCCC-------------------CeEEeCCCChhhHHHHHHHH
Confidence 468999965542 44678999999999996543
No 218
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=91.57 E-value=8.9 Score=39.72 Aligned_cols=149 Identities=7% Similarity=-0.016 Sum_probs=87.5
Q ss_pred CceeEEEEe-CCEEEEEec-CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 22 GVITCMSAG-NDVIVLGTS-KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 22 ~~i~~~~v~-nn~l~~~~~-~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
..+.++++. ++.+|++.. ++.|+++|.. ..+..+.++. ....+..+.+||.|. +.+++. +++..+.+.. .
T Consensus 104 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~---~~~~~~~i~~d~~g~-l~v~~~--~~~~i~~~~~-~ 175 (300)
T 2qc5_A 104 SGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN---KGSYPAFITLGSDNA-LWFTEN--QNNSIGRITN-T 175 (300)
T ss_dssp CCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSS---TTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-T
T ss_pred CCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCC---CCCCceeEEECCCCC-EEEEec--CCCeEEEECC-C
Confidence 457888887 567888776 7899999985 4455555552 135689999999998 666654 1355655554 2
Q ss_pred CCceeccC-CCCceEEEEeecCCCCCCCCcceEEEEcCC-CcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeec
Q 001978 100 SKPRVLSK-LKGLVVNAVAWNRQQITEASTKEIILGTDT-GQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETAS 177 (987)
Q Consensus 100 ~k~k~L~k-lkg~~i~sVaw~~~~~~~~st~~iLiGt~~-G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~ 177 (987)
.+.....- -....+.++++++ .+.+.+++.. |.|+.+.... .+.. +.++.....+.+|.+..
T Consensus 176 g~~~~~~~~~~~~~~~~i~~d~-------~g~l~v~~~~~~~i~~~~~~g------~~~~-~~~~~~~~~~~~i~~d~-- 239 (300)
T 2qc5_A 176 GKLEEYPLPTNAAAPVGITSGN-------DGALWFVEIMGNKIGRITTTG------EISE-YDIPTPNARPHAITAGK-- 239 (300)
T ss_dssp CCEEEEECSSTTCCEEEEEECT-------TSSEEEEETTTTEEEEECTTC------CEEE-EECSSTTCCEEEEEECS--
T ss_pred CcEEEeeCCCCCCCcceEEECC-------CCCEEEEccCCCEEEEEcCCC------cEEE-EECCCCCCCceEEEECC--
Confidence 23222210 1234678888873 2468888754 5577664421 1222 23332223467887752
Q ss_pred cCCCceEEEEEEC--CCeEEEEec
Q 001978 178 LSNGTRYYVMAVT--PTRLYSFTG 199 (987)
Q Consensus 178 ~~~~~~~~i~ast--~~rly~f~g 199 (987)
+ +. +|+++ ..+++.|..
T Consensus 240 ---~-g~-l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 240 ---N-SE-IWFTEWGANQIGRITN 258 (300)
T ss_dssp ---T-TC-EEEEETTTTEEEEECT
T ss_pred ---C-CC-EEEeccCCCeEEEECC
Confidence 1 22 34444 578887754
No 219
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=91.57 E-value=3.9 Score=44.09 Aligned_cols=50 Identities=8% Similarity=-0.076 Sum_probs=40.0
Q ss_pred HHHHchhhHHHHHHhcCC----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..++..|+|++|+.+.+. ......++...|..++..|+|++|...|.+..
T Consensus 72 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 125 (368)
T 1fch_A 72 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL 125 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 358899999999998753 12234567788999999999999999998875
No 220
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.54 E-value=0.026 Score=51.42 Aligned_cols=33 Identities=24% Similarity=0.578 Sum_probs=25.5
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
...|.+|...+.. +. +.||||.||..|+.....
T Consensus 21 ~~~C~IC~~~~~~------------------p~-~~~CgH~fC~~Ci~~~~~ 53 (112)
T 1jm7_A 21 ILECPICLELIKE------------------PV-STKCDHIFCKFCMLKLLN 53 (112)
T ss_dssp HTSCSSSCCCCSS------------------CC-BCTTSCCCCSHHHHHHHH
T ss_pred CCCCcccChhhcC------------------eE-ECCCCCHHHHHHHHHHHH
Confidence 4579999876644 33 369999999999987763
No 221
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=91.52 E-value=7.7 Score=40.33 Aligned_cols=151 Identities=12% Similarity=0.051 Sum_probs=85.9
Q ss_pred ceeEEEE--eCCEEEEEec--CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC
Q 001978 23 VITCMSA--GNDVIVLGTS--KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 23 ~i~~~~v--~nn~l~~~~~--~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
...++++ .++.++++.. ++.|.++|.....+..+..+ ....+..|.+||.|. ++++.. +++..+.+...
T Consensus 78 ~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~----~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~~~~ 150 (286)
T 1q7f_A 78 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGAT----ILQHPRGVTVDNKGR-IIVVEC--KVMRVIIFDQN 150 (286)
T ss_dssp SEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTT----TCSCEEEEEECTTSC-EEEEET--TTTEEEEECTT
T ss_pred CceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCc----cCCCceEEEEeCCCC-EEEEEC--CCCEEEEEcCC
Confidence 4688888 4678888874 78999999744434434322 124678999999996 555543 14566656543
Q ss_pred CCCceeccC-CCCceEEEEeecCCCCCCCCcceEEEEc-CCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEee
Q 001978 99 WSKPRVLSK-LKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (987)
Q Consensus 99 ~~k~k~L~k-lkg~~i~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~ 176 (987)
....+.+.. -....+.+|++++. +.+++++ .++.|+.+..+.. .++.+ ...+....+.+|.+..
T Consensus 151 g~~~~~~~~~~~~~~p~~i~~~~~-------g~l~v~~~~~~~i~~~~~~g~-----~~~~~-~~~g~~~~p~~i~~d~- 216 (286)
T 1q7f_A 151 GNVLHKFGCSKHLEFPNGVVVNDK-------QEIFISDNRAHCVKVFNYEGQ-----YLRQI-GGEGITNYPIGVGINS- 216 (286)
T ss_dssp SCEEEEEECTTTCSSEEEEEECSS-------SEEEEEEGGGTEEEEEETTCC-----EEEEE-SCTTTSCSEEEEEECT-
T ss_pred CCEEEEeCCCCccCCcEEEEECCC-------CCEEEEECCCCEEEEEcCCCC-----EEEEE-ccCCccCCCcEEEECC-
Confidence 332333321 01235889999832 4577764 4677887764321 22221 1221113467888752
Q ss_pred ccCCCceEEEEEEC-CC-eEEEEec
Q 001978 177 SLSNGTRYYVMAVT-PT-RLYSFTG 199 (987)
Q Consensus 177 ~~~~~~~~~i~ast-~~-rly~f~g 199 (987)
+ +.++++.. .. +++.|..
T Consensus 217 ----~-G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 217 ----N-GEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp ----T-CCEEEEECSSSCEEEEECT
T ss_pred ----C-CCEEEEeCCCCEEEEEECC
Confidence 1 23444343 43 7887753
No 222
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=91.44 E-value=0.041 Score=50.48 Aligned_cols=32 Identities=25% Similarity=0.820 Sum_probs=24.8
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAH 882 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~ 882 (987)
..-.|.+|...+.. +.. .+|||.||..|+...
T Consensus 14 ~~~~C~iC~~~~~~------------------p~~-~~CgH~fC~~Ci~~~ 45 (115)
T 3l11_A 14 SECQCGICMEILVE------------------PVT-LPCNHTLCKPCFQST 45 (115)
T ss_dssp HHHBCTTTCSBCSS------------------CEE-CTTSCEECHHHHCCC
T ss_pred CCCCCccCCcccCc------------------eeE-cCCCCHHhHHHHHHH
Confidence 34679999977655 444 499999999999754
No 223
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=91.40 E-value=2.7 Score=39.77 Aligned_cols=49 Identities=14% Similarity=0.020 Sum_probs=38.9
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|++..+.. .....+....|..++..|+|++|...|.+..
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 69 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSL 69 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 477889999999987642 1235677888999999999999999888765
No 224
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=91.40 E-value=2.4 Score=51.28 Aligned_cols=131 Identities=9% Similarity=0.023 Sum_probs=80.9
Q ss_pred cceehhHHHHHhhcCCCceeEEEEeCC--EEEEEec-CC-----eEEEEeC-CCCCceeeEcCCCCC-------------
Q 001978 6 QVFQVDVLERYAAKGRGVITCMSAGND--VIVLGTS-KG-----WLIRHDF-GAGDSYDIDLSAGRP------------- 63 (987)
Q Consensus 6 ~~f~~~~~~~~~~~~~~~i~~~~v~nn--~l~~~~~-~g-----~l~ridl-~~~~~~~~~l~~~~~------------- 63 (987)
+-|.++.+.....-....+++++.+.+ .|+.+.. +| .|+++|+ .+....-+..+....
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (741)
T 2ecf_A 21 EKLTLEAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARR 100 (741)
T ss_dssp -CCCHHHHTSSSCTTCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------
T ss_pred ccccHHHHhccCCcCCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhh
Confidence 345555555321112345889999854 7777776 77 8999999 443222222211000
Q ss_pred ------CccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC---CceeccCCCCceEEEEeecCCCCCCCCcceEEEE
Q 001978 64 ------GEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS---KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILG 134 (987)
Q Consensus 64 ------~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~---k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiG 134 (987)
+...|..+-++|.|+++++++. +..+.++.... +.+.+... +..+.+++|+++ .+.|+.+
T Consensus 101 ~~~~~~~~~~v~~~~~SpDg~~l~~~~~----~~i~~~d~~~~~~~~~~~l~~~-~~~~~~~~~SPD------G~~la~~ 169 (741)
T 2ecf_A 101 ERQRIAAMTGIVDYQWSPDAQRLLFPLG----GELYLYDLKQEGKAAVRQLTHG-EGFATDAKLSPK------GGFVSFI 169 (741)
T ss_dssp ------CCEESCCCEECTTSSEEEEEET----TEEEEEESSSCSTTSCCBCCCS-SSCEEEEEECTT------SSEEEEE
T ss_pred hhhhhccccCcceeEECCCCCEEEEEeC----CcEEEEECCCCCcceEEEcccC-CcccccccCCCC------CCEEEEE
Confidence 0023778889999999988875 88887777665 56666543 357999999943 1245555
Q ss_pred cCCCcEEEEEeccC
Q 001978 135 TDTGQLHEMAVDEK 148 (987)
Q Consensus 135 t~~G~i~e~~i~~~ 148 (987)
+ ++.|+...+..+
T Consensus 170 ~-~~~i~~~d~~~g 182 (741)
T 2ecf_A 170 R-GRNLWVIDLASG 182 (741)
T ss_dssp E-TTEEEEEETTTT
T ss_pred e-CCcEEEEecCCC
Confidence 4 567888776543
No 225
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=91.29 E-value=0.065 Score=50.21 Aligned_cols=42 Identities=24% Similarity=0.456 Sum_probs=30.2
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHhh
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVTQ 885 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~~ 885 (987)
....|++|...+..+-...+ ..++.+|||.||.+|+.+....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~------------~~~~~~CgH~fc~~Ci~~~~~~ 47 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGR------------LIVSTECGHVFCSQCLRDSLKN 47 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTC------------CEEEETTCCEEEHHHHHHHHTT
T ss_pred CCCCCcccChhhhCcccccc------------CeEecCCCChhhHHHHHHHHHh
Confidence 45689999988765200002 4688899999999999988643
No 226
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=91.22 E-value=11 Score=39.49 Aligned_cols=160 Identities=13% Similarity=0.114 Sum_probs=86.8
Q ss_pred CceeEEEEeC--CEEEEEecCCeEEEEeCCCCCceee-EcCCCCCCccceeEEEeCCCCCeEEEEeecCCC---------
Q 001978 22 GVITCMSAGN--DVIVLGTSKGWLIRHDFGAGDSYDI-DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG--------- 89 (987)
Q Consensus 22 ~~i~~~~v~n--n~l~~~~~~g~l~ridl~~~~~~~~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~--------- 89 (987)
+.+.++++.. +.+|++...+.|+++|.. ..+..+ .-.........++.+.+||.|. +.+++.. +
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~--~~~~~~~~~~ 146 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPA--GEVAPADYTR 146 (314)
T ss_dssp CCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECB--CBCTTSCCCB
T ss_pred CCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecC--cccccccccc
Confidence 3578888865 589999987799999986 444332 1111111124688999999996 5555431 2
Q ss_pred ------ccEEEEecCCCCceeccCCCCceEEEEeec----CCCCCCCCcceEEEE-cCCCcEEEEEeccCccccceeeee
Q 001978 90 ------AETFYTHAKWSKPRVLSKLKGLVVNAVAWN----RQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYIKLL 158 (987)
Q Consensus 90 ------g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~----~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~e~~~k~v 158 (987)
+..|.+... .+.+.+.. .......++|+ ++ .+.+.++ +.++.|+.+.++.. +.-...+.+
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~d------g~~l~v~~~~~~~i~~~~~~~~-g~~~~~~~~ 217 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGR------PYQLIVAETPTKKLWSYDIKGP-AKIENKKVW 217 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSC------EEEEEEEETTTTEEEEEEEEET-TEEEEEEEE
T ss_pred cccCCCCeEEEECCC-CCEEEecc-CCCCcceEEEecccCCC------CCEEEEEECCCCeEEEEECCCC-CccccceEE
Confidence 456666544 33333221 11245778887 32 2245555 45678888776521 111111223
Q ss_pred eeeCCCC-CceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 159 FELNELP-EAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 159 ~~l~~~~-~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
..++... +.+.+|.+.. .+ +.++-..+...++.|..
T Consensus 218 ~~~~~~~~~~p~~i~~d~---~G--~l~v~~~~~~~i~~~d~ 254 (314)
T 1pjx_A 218 GHIPGTHEGGADGMDFDE---DN--NLLVANWGSSHIEVFGP 254 (314)
T ss_dssp EECCCCSSCEEEEEEEBT---TC--CEEEEEETTTEEEEECT
T ss_pred EECCCCCCCCCCceEECC---CC--CEEEEEcCCCEEEEEcC
Confidence 3444321 3467777752 11 22222225678888854
No 227
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=91.17 E-value=3.6 Score=44.42 Aligned_cols=141 Identities=11% Similarity=0.011 Sum_probs=81.8
Q ss_pred eEEEEeC---CEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC
Q 001978 25 TCMSAGN---DVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK 101 (987)
Q Consensus 25 ~~~~v~n---n~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (987)
.+.+... .+++.+...|.|+++|.....+..+..+ ..+..+..+|.|.. ++++. +| .+.++....+
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~------~~v~~i~~~~dg~l-~v~~~---~g-l~~~d~~~g~ 120 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALP------FMGSALAKISDSKQ-LIASD---DG-LFLRDTATGV 120 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECS------SCEEEEEEEETTEE-EEEET---TE-EEEEETTTCC
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECC------CcceEEEEeCCCeE-EEEEC---CC-EEEEECCCCc
Confidence 4556654 3567777889999999943444444443 46888889999974 45554 44 6566654445
Q ss_pred ceeccCC----CCceEEEEeecCCCCCCCCcceEEEEcC-------CCcEEEEEeccCccccceeeeeeeeCCCCCceee
Q 001978 102 PRVLSKL----KGLVVNAVAWNRQQITEASTKEIILGTD-------TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMG 170 (987)
Q Consensus 102 ~k~L~kl----kg~~i~sVaw~~~~~~~~st~~iLiGt~-------~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~g 170 (987)
.+.+... .+..+.+++|++ .|.+.+||. .|.||.+. +. .++.+..-. ....|
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~d~-------~G~l~v~~~~~~~~~~~~~l~~~~-~g------~~~~~~~~~---~~~~~ 183 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSNDGRMHP-------SGALWIGTMGRKAETGAGSIYHVA-KG------KVTKLFADI---SIPNS 183 (326)
T ss_dssp EEEEECSSTTCTTEEEEEEEECT-------TSCEEEEEEETTCCTTCEEEEEEE-TT------EEEEEEEEE---SSEEE
T ss_pred EEEEeeCCCCCCCCCCCCEEECC-------CCCEEEEeCCCcCCCCceEEEEEe-CC------cEEEeeCCC---cccCC
Confidence 4444322 234688999983 246888874 36677765 21 123222111 12457
Q ss_pred EEEEeeccCCCceEEEEEEC-CCeEEEEe
Q 001978 171 LQMETASLSNGTRYYVMAVT-PTRLYSFT 198 (987)
Q Consensus 171 i~~~~~~~~~~~~~~i~ast-~~rly~f~ 198 (987)
+.|. .+.+.+.++.+ ..+++.|.
T Consensus 184 i~~s-----~dg~~lyv~~~~~~~I~~~d 207 (326)
T 2ghs_A 184 ICFS-----PDGTTGYFVDTKVNRLMRVP 207 (326)
T ss_dssp EEEC-----TTSCEEEEEETTTCEEEEEE
T ss_pred eEEc-----CCCCEEEEEECCCCEEEEEE
Confidence 7764 22244555444 45677664
No 228
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=91.04 E-value=9.9 Score=40.14 Aligned_cols=154 Identities=6% Similarity=0.020 Sum_probs=88.0
Q ss_pred ceeEEEEeCC--EEEEEe-cCCeEEEEeCCC-CCcee-----eEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 23 VITCMSAGND--VIVLGT-SKGWLIRHDFGA-GDSYD-----IDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 23 ~i~~~~v~nn--~l~~~~-~~g~l~ridl~~-~~~~~-----~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
.+.+++++.+ .++++. .+|.|.++|+.. ..+.. +..+. ...+..+-++|.|..++++.. .++...
T Consensus 130 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~pdg~~l~~~~~--~~~~i~ 203 (343)
T 1ri6_A 130 GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE----GAGPRHMVFHPNEQYAYCVNE--LNSSVD 203 (343)
T ss_dssp TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST----TCCEEEEEECTTSSEEEEEET--TTTEEE
T ss_pred CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC----CCCcceEEECCCCCEEEEEeC--CCCEEE
Confidence 4677788754 777776 789999999933 44432 23321 246788999999999888763 146555
Q ss_pred EEecCC--CCce---eccCCC-----CceEEEEeecCCCCCCCCcceEEEEc-CCCcEEEEEeccCccccceeeeeeeeC
Q 001978 94 YTHAKW--SKPR---VLSKLK-----GLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDEKDKREKYIKLLFELN 162 (987)
Q Consensus 94 Y~~~~~--~k~k---~L~klk-----g~~i~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~~~~~e~~~k~v~~l~ 162 (987)
.+.... .+.+ .+..+. ...+.+++|+++ .+.++++. .+|.|....+....+ ..+.+..++
T Consensus 204 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d------g~~l~v~~~~~~~i~v~d~~~~~~---~~~~~~~~~ 274 (343)
T 1ri6_A 204 VWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD------GRHLYACDRTASLITVFSVSEDGS---VLSKEGFQP 274 (343)
T ss_dssp EEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT------SSEEEEEETTTTEEEEEEECTTSC---CEEEEEEEE
T ss_pred EEEecCCCCcEEEEeeccccCccccccCCccceEECCC------CCEEEEEecCCCEEEEEEEcCCCC---ceEEeeeec
Confidence 555422 2221 111111 135678999843 12455444 678888888763211 133333333
Q ss_pred CCCCceeeEEEEeeccCCCceEEEEEEC-CCeEEEE
Q 001978 163 ELPEAFMGLQMETASLSNGTRYYVMAVT-PTRLYSF 197 (987)
Q Consensus 163 ~~~~~I~gi~~~~~~~~~~~~~~i~ast-~~rly~f 197 (987)
.. +.+.++.|.. +.+++++++. ...+.-|
T Consensus 275 ~~-~~~~~~~~s~-----dg~~l~~~~~~~~~v~v~ 304 (343)
T 1ri6_A 275 TE-TQPRGFNVDH-----SGKYLIAAGQKSHHISVY 304 (343)
T ss_dssp CS-SSCCCEEECT-----TSSEEEEECTTTCEEEEE
T ss_pred CC-CccceEEECC-----CCCEEEEecCCCCeEEEE
Confidence 21 3378888852 2345555542 4566655
No 229
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=91.04 E-value=9.7 Score=39.41 Aligned_cols=109 Identities=11% Similarity=0.105 Sum_probs=68.8
Q ss_pred CceeEEEEe-CCEEEEEec-CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 22 GVITCMSAG-NDVIVLGTS-KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 22 ~~i~~~~v~-nn~l~~~~~-~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
..+.++++. ++.+|++.. +|.|+++|.. ..+..+.+|. ....+..|.+||.|. +.++.. +++..+.+.. .
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~---~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~d~-~ 128 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPN---PDSAPYGITEGPNGD-IWFTEM--NGNRIGRITD-D 128 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSS---TTCCEEEEEECTTSC-EEEEET--TTTEEEEECT-T
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCC---cCCCceeeEECCCCC-EEEEec--CCceEEEECC-C
Confidence 457888884 557888876 6899999984 3355566552 135789999999985 555543 1455655554 3
Q ss_pred CCceecc-CCCCceEEEEeecCCCCCCCCcceEEEEcC-CCcEEEEEe
Q 001978 100 SKPRVLS-KLKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAV 145 (987)
Q Consensus 100 ~k~k~L~-klkg~~i~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i 145 (987)
.+.+... ...+..+.++++++. +.+.+++. .|.|+....
T Consensus 129 g~~~~~~~~~~~~~~~~i~~~~~-------g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 129 GKIREYELPNKGSYPSFITLGSD-------NALWFTENQNNAIGRITE 169 (299)
T ss_dssp CCEEEEECSSTTCCEEEEEECTT-------SCEEEEETTTTEEEEECT
T ss_pred CCEEEecCCCCCCCCceEEEcCC-------CCEEEEeCCCCEEEEEcC
Confidence 2332221 113456889999832 36777764 477777654
No 230
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=90.97 E-value=18 Score=38.20 Aligned_cols=56 Identities=9% Similarity=-0.073 Sum_probs=38.1
Q ss_pred EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 33 VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 33 ~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
+++.++.+|.|+++|.. ..+..+..+ ...+..+.+||.|. +++|+. +++..+.++.
T Consensus 59 l~~~d~~~~~i~~~~~~-g~~~~~~~~-----~~~~~gl~~d~dG~-l~v~~~--~~~~v~~~~~ 114 (305)
T 3dr2_A 59 LVWSDLVGRRVLGWRED-GTVDVLLDA-----TAFTNGNAVDAQQR-LVHCEH--GRRAITRSDA 114 (305)
T ss_dssp EEEEETTTTEEEEEETT-SCEEEEEES-----CSCEEEEEECTTSC-EEEEET--TTTEEEEECT
T ss_pred EEEEECCCCEEEEEeCC-CCEEEEeCC-----CCccceeeECCCCC-EEEEEC--CCCEEEEECC
Confidence 67888899999999983 224444433 24678999999997 677764 1244555554
No 231
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=90.95 E-value=5 Score=40.37 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=37.8
Q ss_pred HHHchhhHHHHHHhcCCch---hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL---QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~---~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+++.+... ....++...|..++..|+|++|.+.|.+..
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 65 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAV 65 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4677889999988865311 335678888999999999999999888765
No 232
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=90.89 E-value=1.8 Score=44.07 Aligned_cols=49 Identities=16% Similarity=-0.001 Sum_probs=38.0
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+++.+.. .....++...|..++..|+|++|.+.|.+..
T Consensus 46 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 98 (252)
T 2ho1_A 46 GYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKAL 98 (252)
T ss_dssp HHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 367788999998886531 1234677888999999999999999998765
No 233
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=90.35 E-value=0.074 Score=49.04 Aligned_cols=35 Identities=26% Similarity=0.735 Sum_probs=27.6
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+...-.|.+|...+.. + ++.+|||.|+..|+...+
T Consensus 15 ~~~~~~C~IC~~~~~~------------------p-~~~~CgH~fC~~Ci~~~~ 49 (118)
T 3hct_A 15 LESKYECPICLMALRE------------------A-VQTPCGHRFCKACIIKSI 49 (118)
T ss_dssp CCGGGBCTTTCSBCSS------------------E-EECTTSCEEEHHHHHHHH
T ss_pred CCCCCCCCcCChhhcC------------------e-EECCcCChhhHHHHHHHH
Confidence 4455689999977655 5 446999999999998765
No 234
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=90.28 E-value=4.1 Score=39.11 Aligned_cols=47 Identities=11% Similarity=0.048 Sum_probs=27.1
Q ss_pred HHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 001978 371 YLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKI 417 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~ 417 (987)
|..+|+|++|++..+... .-..++...|.-++..|+|++|...+.+.
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 15 KRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 556666777666654211 11244555666666667777666666554
No 235
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=90.25 E-value=12 Score=38.09 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=38.5
Q ss_pred HHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhH-HHHHhHChHHHHHHHHcCCCCCCC
Q 001978 539 IVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFA-PDLIMLDAYETVESWMTTNNLNPR 595 (987)
Q Consensus 539 ~ll~~yi~~~~~~~AL~~l~~~----~~~~~li~k~~-~~Ll~~~p~~ti~~l~~~~~ld~~ 595 (987)
.+...|...|+|++|++.+.+. +.....++..+ ......+.++++..+.+...++|.
T Consensus 113 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4667888999999999998753 22245666666 566666788888777543334444
No 236
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=90.13 E-value=5.2 Score=41.10 Aligned_cols=150 Identities=9% Similarity=0.100 Sum_probs=82.3
Q ss_pred ceeEEEEe-CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC
Q 001978 23 VITCMSAG-NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK 101 (987)
Q Consensus 23 ~i~~~~v~-nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (987)
.+.++++. ++.+|++..+|.|+++|........+... +...+..|.+||.|. ++++.. +++..+.+......
T Consensus 68 ~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~----~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~~~~ 140 (270)
T 1rwi_B 68 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD----GLNYPEGLAVDTQGA-VYVADR--GNNRVVKLAAGSKT 140 (270)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC----SCSSEEEEEECTTCC-EEEEEG--GGTEEEEECTTCCS
T ss_pred CcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecC----CcCCCcceEECCCCC-EEEEEC--CCCEEEEEECCCce
Confidence 46788886 34688887788999999943333333221 124678999999997 666543 14566666543332
Q ss_pred ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcC-CCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCC
Q 001978 102 PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (987)
Q Consensus 102 ~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (987)
...........+.++++++ .+.+.+++. .|.|+........ ... ..... ...+.+|.+..
T Consensus 141 ~~~~~~~~~~~p~~i~~~~-------~g~l~v~~~~~~~i~~~~~~~~~-----~~~-~~~~~-~~~p~~i~~d~----- 201 (270)
T 1rwi_B 141 QTVLPFTGLNDPDGVAVDN-------SGNVYVTDTDNNRVVKLEAESNN-----QVV-LPFTD-ITAPWGIAVDE----- 201 (270)
T ss_dssp CEECCCCSCCSCCCEEECT-------TCCEEEEEGGGTEEEEECTTTCC-----EEE-CCCSS-CCSEEEEEECT-----
T ss_pred eEeeccccCCCceeEEEeC-------CCCEEEEECCCCEEEEEecCCCc-----eEe-ecccC-CCCceEEEECC-----
Confidence 2222111112467778873 235777764 5677776544321 111 11111 13467887752
Q ss_pred CceEEEEEEC-CCeEEEEec
Q 001978 181 GTRYYVMAVT-PTRLYSFTG 199 (987)
Q Consensus 181 ~~~~~i~ast-~~rly~f~g 199 (987)
+ +.+.+++. ..+++.|..
T Consensus 202 ~-g~l~v~~~~~~~v~~~~~ 220 (270)
T 1rwi_B 202 A-GTVYVTEHNTNQVVKLLA 220 (270)
T ss_dssp T-CCEEEEETTTSCEEEECT
T ss_pred C-CCEEEEECCCCcEEEEcC
Confidence 1 23333333 567887753
No 237
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.04 E-value=0.025 Score=44.70 Aligned_cols=30 Identities=30% Similarity=0.652 Sum_probs=23.3
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIA 881 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~ 881 (987)
.-.|.+|...+.. + ++.||||.|+..|+..
T Consensus 6 ~~~C~IC~~~~~~------------------p-~~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 6 FLRCQQCQAEAKC------------------P-KLLPCLHTLCSGCLEA 35 (56)
T ss_dssp CSSCSSSCSSCBC------------------C-SCSTTSCCSBTTTCSS
T ss_pred CCCceEeCCccCC------------------e-EEcCCCCcccHHHHcc
Confidence 4579999876654 3 4579999999999854
No 238
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=89.86 E-value=0.064 Score=49.29 Aligned_cols=50 Identities=22% Similarity=0.466 Sum_probs=0.5
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
.+.|++|...+....+.-+ ......++...+.+.-+|||.||..|+..-+
T Consensus 48 ~d~CaICl~~~~~~c~~C~-~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl 97 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQ-ANQASATSEECTVAWGVCNHAFHFHCISRWL 97 (117)
T ss_dssp C--------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhh-cccccccccccccccCCcCceEcHHHHHHHH
Confidence 4789999988876321100 0000001111234445899999999998754
No 239
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=89.76 E-value=3.3 Score=43.86 Aligned_cols=141 Identities=12% Similarity=0.026 Sum_probs=82.4
Q ss_pred CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce-eccCCC
Q 001978 32 DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR-VLSKLK 109 (987)
Q Consensus 32 n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k-~L~klk 109 (987)
++++.+..+|.|..+|+ ....+..+.++... ..+..+-++|.|.+++++.. .++..+-+.....+.. .+.--.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~ 76 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAG---PTPMVPMVAPGGRIAYATVN--KSESLVKIDLVTGETLGRIDLST 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCT---TCCCCEEECTTSSEEEEEET--TTTEEEEEETTTCCEEEEEECCB
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCC---CCccceEEcCCCCEEEEEeC--CCCeEEEEECCCCCeEeeEEcCC
Confidence 46778888999999999 55545556655210 04678889999999888765 2466766665544432 222100
Q ss_pred ----CceEEEEeecCCCCCCCCcceEEEEc------------CCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEE
Q 001978 110 ----GLVVNAVAWNRQQITEASTKEIILGT------------DTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (987)
Q Consensus 110 ----g~~i~sVaw~~~~~~~~st~~iLiGt------------~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~ 173 (987)
+..+.+++|+++ .+.+.++. .++.|+...+... + ....+..+ ..+.++.|
T Consensus 77 ~~~~~~~~~~~~~s~d------g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----~-~~~~~~~~---~~~~~~~~ 142 (337)
T 1pby_B 77 PEERVKSLFGAALSPD------GKTLAIYESPVRLELTHFEVQPTRVALYDAETL----S-RRKAFEAP---RQITMLAW 142 (337)
T ss_dssp TTEEEECTTCEEECTT------SSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----E-EEEEEECC---SSCCCEEE
T ss_pred cccccccccceEECCC------CCEEEEEecccccccccccccCceEEEEECCCC----c-EEEEEeCC---CCcceeEE
Confidence 114667888832 22566664 4577887766432 1 11222332 34677777
Q ss_pred EeeccCCCceEEEEEECCCeEEEEe
Q 001978 174 ETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.. +.++++++ +..++.|.
T Consensus 143 s~-----dg~~l~~~--~~~i~~~d 160 (337)
T 1pby_B 143 AR-----DGSKLYGL--GRDLHVMD 160 (337)
T ss_dssp CT-----TSSCEEEE--SSSEEEEE
T ss_pred CC-----CCCEEEEe--CCeEEEEE
Confidence 52 22445443 45677665
No 240
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=89.72 E-value=1.6 Score=43.94 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=28.7
Q ss_pred HHchhhHHHHHHhcCC----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
++..|+|++|+.+.+. ......+....|..++..|+|++|...|.+..
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 84 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL 84 (243)
T ss_dssp ---------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6677888888776542 11234677788899999999999999988765
No 241
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=89.68 E-value=3.4 Score=50.51 Aligned_cols=111 Identities=13% Similarity=0.076 Sum_probs=68.6
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK 101 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (987)
..|.+++..++.||+|+.+ -|+++|........+.......+...|..|+.|+.|. +.|.|. +| .+.++....+
T Consensus 103 ~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~---~G-l~~~~~~~~~ 176 (758)
T 3ott_A 103 TDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ-IYVGTY---NG-LCRYIPSNGK 176 (758)
T ss_dssp SCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC-EEEEET---TE-EEEEETTTTE
T ss_pred ceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC-EEEEeC---CC-HhhCccCCCc
Confidence 4578888889999999987 6899998444454442110111235789999999886 556666 45 4444443333
Q ss_pred ceec--c---CCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEe
Q 001978 102 PRVL--S---KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAV 145 (987)
Q Consensus 102 ~k~L--~---klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i 145 (987)
.+.. + .+.+..|.++..++. .+.+.|||..| |+.+..
T Consensus 177 ~~~~~~~~~~~~~~~~i~~i~~d~~------~~~lWigt~~G-l~~~~~ 218 (758)
T 3ott_A 177 FEGIPLPVHSSQSNLFVNSLLEDTT------RQCVWIGTEGY-LFQYFP 218 (758)
T ss_dssp EEEECCCCCTTCSSCCEEEEEEETT------TTEEEEEEEEE-EEEEET
T ss_pred eEEecCCCccccccceeEEEEEECC------CCEEEEEECCC-CeEEcC
Confidence 3222 1 112345888888721 23589999766 666543
No 242
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=89.60 E-value=4.2 Score=42.76 Aligned_cols=128 Identities=10% Similarity=0.039 Sum_probs=70.5
Q ss_pred CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC-CCCc----eeccCCCCceEE
Q 001978 40 KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK-WSKP----RVLSKLKGLVVN 114 (987)
Q Consensus 40 ~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~-~~k~----k~L~klkg~~i~ 114 (987)
.|.|+++|.. ..+..+.-. ......+.++|.|..+ ++.. .++..+-+... ..++ +.+ ...+-.+.
T Consensus 152 ~~~l~~~~~~-g~~~~~~~~-----~~~~~gi~~s~dg~~l-v~~~--~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~ 221 (296)
T 3e5z_A 152 GRWVFRLAPD-GTLSAPIRD-----RVKPNGLAFLPSGNLL-VSDT--GDNATHRYCLNARGETEYQGVHF-TVEPGKTD 221 (296)
T ss_dssp SCEEEEECTT-SCEEEEECC-----CSSEEEEEECTTSCEE-EEET--TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCC
T ss_pred CcEEEEECCC-CCEEEeecC-----CCCCccEEECCCCCEE-EEeC--CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCC
Confidence 5689999884 333322111 2456889999999988 5543 13444444332 1111 222 22223455
Q ss_pred EEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeE
Q 001978 115 AVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRL 194 (987)
Q Consensus 115 sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rl 194 (987)
+++|++ .|.+.+++ .|.|+.+..+. +.+. .+..+. . ++++.+.. .+ +-.++++|...|
T Consensus 222 ~i~~d~-------~G~l~v~~-~~~v~~~~~~g-----~~~~-~~~~~~--~-~~~~~f~~----~d-~~~L~v~t~~~l 279 (296)
T 3e5z_A 222 GLRVDA-------GGLIWASA-GDGVHVLTPDG-----DELG-RVLTPQ--T-TSNLCFGG----PE-GRTLYMTVSTEF 279 (296)
T ss_dssp SEEEBT-------TSCEEEEE-TTEEEEECTTS-----CEEE-EEECSS--C-CCEEEEES----TT-SCEEEEEETTEE
T ss_pred eEEECC-------CCCEEEEc-CCeEEEECCCC-----CEEE-EEECCC--C-ceeEEEEC----CC-CCEEEEEcCCeE
Confidence 677772 35788888 66566654332 1222 245553 3 78887741 12 234555777889
Q ss_pred EEEec
Q 001978 195 YSFTG 199 (987)
Q Consensus 195 y~f~g 199 (987)
|.+.-
T Consensus 280 ~~~~~ 284 (296)
T 3e5z_A 280 WSIET 284 (296)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 98854
No 243
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=89.53 E-value=1.5 Score=47.08 Aligned_cols=129 Identities=11% Similarity=0.083 Sum_probs=76.3
Q ss_pred EeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccC
Q 001978 29 AGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSK 107 (987)
Q Consensus 29 v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~k 107 (987)
..+++++.+..+|+|.++|+ ....+..+.++. ...+..+-++|.|.+++++.. +++..+.+.....+......
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~~~~s~dg~~~~v~~~--~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD----KFGPGTAMMAPDNRTAYVLNN--HYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSS----CCSSCEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC----CCCCceeEECCCCCEEEEEeC--CCCcEEEEeCCCCcEEEEEE
Confidence 34456666778999999999 554455666552 124677888999998888764 25677667665443322111
Q ss_pred CC------CceEEEEeecCCCCCCCCcceEEEEcCC------------CcEEEEEeccCccccceeeeeeeeCCCCCcee
Q 001978 108 LK------GLVVNAVAWNRQQITEASTKEIILGTDT------------GQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (987)
Q Consensus 108 lk------g~~i~sVaw~~~~~~~~st~~iLiGt~~------------G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~ 169 (987)
+. +..+.+++|+++ .+.++++..+ +.|+...+..+. ..+.. ..+..+ ..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~spd------g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~-~~~~~~---~~~~ 151 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPD------GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-EAKPV-RTFPMP---RQVY 151 (349)
T ss_dssp SCCSTTEEEECSSCEEECTT------SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-GBCCS-EEEECC---SSCC
T ss_pred cccccccccccccceEECCC------CCEEEEEcccccccccccccCCCeEEEEECCCcc-cccee-eeccCC---Cccc
Confidence 11 233778899843 2357777654 778877765431 11111 122233 3477
Q ss_pred eEEEE
Q 001978 170 GLQME 174 (987)
Q Consensus 170 gi~~~ 174 (987)
++.|.
T Consensus 152 ~~~~s 156 (349)
T 1jmx_B 152 LMRAA 156 (349)
T ss_dssp CEEEC
T ss_pred ceeEC
Confidence 88775
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.40 E-value=3 Score=41.02 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=48.2
Q ss_pred hhhHHHHHHchhhHHHHHHhcCCchhHhHHHHHHHHHHHhcCCHHHHHHHHHhhcCCCChHHHHHH
Q 001978 364 GRDMWKVYLDMKEYAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAASFYAKINYILSFEEITLK 429 (987)
Q Consensus 364 ~~~~W~~ll~~~~fe~Al~~~~~~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~~~E~v~lk 429 (987)
.+..-.+-++-|+++.|+++|+.- +......+-|+.-+.+|++.-|.++|.++. .|+.+-+.
T Consensus 8 ~~~rF~LAL~lg~l~~A~e~a~~l-~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---D~~~L~~L 69 (177)
T 3mkq_B 8 PHIRFDLALEYGNLDAALDEAKKL-NDSITWERLIQEALAQGNASLAEMIYQTQH---SFDKLSFL 69 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---CHHHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHh-CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---CHHHHHHH
Confidence 345556789999999999998631 235567888999999999999999999986 56554443
No 245
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=89.17 E-value=7.6 Score=45.25 Aligned_cols=140 Identities=6% Similarity=0.020 Sum_probs=80.5
Q ss_pred cCCeEEEEeCCCCCc-ee--eEcCCCCCCccceeEEEeCCC------CCeEEEEeecCCCccEEEEecCCCCce------
Q 001978 39 SKGWLIRHDFGAGDS-YD--IDLSAGRPGEQSIHKVFVDPG------GSHCIATIVGSGGAETFYTHAKWSKPR------ 103 (987)
Q Consensus 39 ~~g~l~ridl~~~~~-~~--~~l~~~~~~~~~i~~i~lDp~------G~hlli~~~~~~~g~~~Y~~~~~~k~k------ 103 (987)
.+|+|-.||+...+. .. ..+.. ..+.|..+-..|. |..++.++. +|....++....+..
T Consensus 181 ~D~tI~iWd~~~~~~~~~~~~~l~~---~~~~V~~v~wsp~~~~~~~~~~LAs~s~---DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVKVQTIVH---SFGEVWDLKWHEGCHAPHLVGCLSFVSQ---EGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEE---CCCSEEEEEECSSCCCSSSSCEEEEEET---TSCEEEEECCCCSSSSSEEEC
T ss_pred CCceEEEEEccCCCCCceEEEEEEe---cCCcEEEEEECCCCCCCCCCceEEEEec---CCeEEEEEcCCCcccccccee
Confidence 457788889832222 11 11111 1256888888876 455555555 888887776433211
Q ss_pred ---eccCCC--CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeecc
Q 001978 104 ---VLSKLK--GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (987)
Q Consensus 104 ---~L~klk--g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (987)
+...++ ...|+||+|+++ +.|+.|+.+|.|....+..+. .....+.... ++|++|.+.. +.
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~~-------~~lasgs~DgtV~lWD~~~~~----~~~~~~~~H~--~~V~sv~~~~-s~ 320 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLSP-------TTVVCGFKNGFVAEFDLTDPE----VPSFYDQVHD--SYILSVSTAY-SD 320 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESSS-------SEEEEEETTSEEEEEETTBCS----SCSEEEECSS--SCEEEEEEEC-CT
T ss_pred ecCceEEEEcCCCCEEEEEecCC-------CeEEEEeCCCEEEEEECCCCC----CceEEeeccc--ccEEEEEEEc-CC
Confidence 111222 357999999832 269999999999888776431 1112223333 5799995432 11
Q ss_pred CCCceEEEEEECCCeEEEEec
Q 001978 179 SNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 179 ~~~~~~~i~ast~~rly~f~g 199 (987)
.+.++++-++....+.-|.-
T Consensus 321 -~g~~~laS~S~D~tvklWD~ 340 (524)
T 2j04_B 321 -FEDTVVSTVAVDGYFYIFNP 340 (524)
T ss_dssp -TSCCEEEEEETTSEEEEECG
T ss_pred -CCCeEEEEeccCCeEEEEEC
Confidence 11156777777777777753
No 246
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=89.15 E-value=24 Score=38.31 Aligned_cols=159 Identities=10% Similarity=0.111 Sum_probs=93.1
Q ss_pred CceeEE-EEe----CCEEEEEecCCeEEEEeC-C---CCC--ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCc
Q 001978 22 GVITCM-SAG----NDVIVLGTSKGWLIRHDF-G---AGD--SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGA 90 (987)
Q Consensus 22 ~~i~~~-~v~----nn~l~~~~~~g~l~ridl-~---~~~--~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g 90 (987)
+.|.++ .+. +..+++++++|.+-|..+ . +.. ..-+.+. . ++.+..+++-.+..++++.|+ .|
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lk---e-~D~lv~~~~~~~~d~ill~T~---~G 167 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLR---D-NDELVGAVLCSAGDDLLLVSA---NG 167 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCC---T-TCCEEEEEEECTTCEEEEEET---TS
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEEC---C-CCEEEEEEEecCCCEEEEEEC---CC
Confidence 345555 443 468999999999999987 2 111 1112222 2 356667776556678888888 89
Q ss_pred cEEEEecCCCCceecc---------CC-CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC---ccccceeee
Q 001978 91 ETFYTHAKWSKPRVLS---------KL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK---DKREKYIKL 157 (987)
Q Consensus 91 ~~~Y~~~~~~k~k~L~---------kl-kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~---~~~e~~~k~ 157 (987)
..|.+....+.++.+. +| .|-.|.++...++ ...+|+.|++|.+..+.+..- .+..+-++.
T Consensus 168 ~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~------~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 168 QSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVRE------GTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCT------TCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred eEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECC------CCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 9988876522222222 22 2334555544421 237999999998888877532 111122232
Q ss_pred eeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 158 LFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 158 v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
+++.+..+.+-++.... +...++++|...++..|.-
T Consensus 242 -~~l~~~~d~lv~~~~~~-----~~~~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 242 -VMYDRRRGRLVGALIVD-----DDSELYAVTSGGGVIRTAA 277 (327)
T ss_dssp -SCCCTTTCSEEEEEEEC-----TTCEEEEEEGGGCEEEEEG
T ss_pred -EEecCCCCeEEEEEEeC-----CCccEEEEcCCCeEEEEeh
Confidence 35544224466665531 2246777788888888853
No 247
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=88.94 E-value=25 Score=36.94 Aligned_cols=152 Identities=8% Similarity=-0.004 Sum_probs=83.7
Q ss_pred ceeEEEEeC--CEEEEEec-CCeEEEEeC-CCCC-ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCc---cEEE
Q 001978 23 VITCMSAGN--DVIVLGTS-KGWLIRHDF-GAGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGA---ETFY 94 (987)
Q Consensus 23 ~i~~~~v~n--n~l~~~~~-~g~l~ridl-~~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g---~~~Y 94 (987)
.. +++++. +.++++.. ++.|+++|+ .... ...+... ......+-++|.|.+++++.. ++ ..+.
T Consensus 42 ~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~v 112 (331)
T 3u4y_A 42 FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG-----QSSMADVDITPDDQFAVTVTG---LNHPFNMQS 112 (331)
T ss_dssp EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC-----SSCCCCEEECTTSSEEEECCC---SSSSCEEEE
T ss_pred cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC-----CCCccceEECCCCCEEEEecC---CCCcccEEE
Confidence 44 778764 45666665 789999999 4433 3333332 223333889999999984433 32 6666
Q ss_pred EecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEE-cCCCc-EEEEEeccCccccceeeeeeeeCCCCCceeeEE
Q 001978 95 THAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILG-TDTGQ-LHEMAVDEKDKREKYIKLLFELNELPEAFMGLQ 172 (987)
Q Consensus 95 ~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiG-t~~G~-i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~ 172 (987)
+.....+...... .+....+++|+++ .+.++++ ..++. |..+.++........-..+ ++. .....++.
T Consensus 113 ~d~~~~~~~~~~~-~~~~~~~~~~spd------g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~-~~~~~~~~ 182 (331)
T 3u4y_A 113 YSFLKNKFISTIP-IPYDAVGIAISPN------GNGLILIDRSSANTVRRFKIDADGVLFDTGQEF--ISG-GTRPFNIT 182 (331)
T ss_dssp EETTTTEEEEEEE-CCTTEEEEEECTT------SSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE--ECS-SSSEEEEE
T ss_pred EECCCCCeEEEEE-CCCCccceEECCC------CCEEEEEecCCCceEEEEEECCCCcEeecCCcc--ccC-CCCccceE
Confidence 6665544322222 2456789999943 1235555 34477 8877776432110000111 222 13467777
Q ss_pred EEeeccCCCceEEEEEEC-CCeEEEEe
Q 001978 173 METASLSNGTRYYVMAVT-PTRLYSFT 198 (987)
Q Consensus 173 ~~~~~~~~~~~~~i~ast-~~rly~f~ 198 (987)
|. .+.++++++.. ...++.|.
T Consensus 183 ~s-----pdg~~l~v~~~~~~~v~v~d 204 (331)
T 3u4y_A 183 FT-----PDGNFAFVANLIGNSIGILE 204 (331)
T ss_dssp EC-----TTSSEEEEEETTTTEEEEEE
T ss_pred EC-----CCCCEEEEEeCCCCeEEEEE
Confidence 75 22345555443 56677665
No 248
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=88.62 E-value=4.4 Score=43.87 Aligned_cols=50 Identities=10% Similarity=-0.057 Sum_probs=40.0
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..|...|+|++|+++.+.. .....++...|..+...|+|++|...|.+..
T Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 160 (365)
T 4eqf_A 107 ITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI 160 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 4577889999999987632 1234678888999999999999999998875
No 249
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=88.61 E-value=2.7 Score=42.30 Aligned_cols=49 Identities=14% Similarity=0.023 Sum_probs=38.9
Q ss_pred HHHchhhHHHHHHhcCC----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+...+. ...-...+...|.-++..|+|++|...|.+..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 66 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV 66 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999988653 12234667788999999999999999998875
No 250
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=88.61 E-value=5.9 Score=41.56 Aligned_cols=202 Identities=9% Similarity=-0.002 Sum_probs=103.2
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc--CCCC---hHHHHHHhcCcChHHHH
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YILS---FEEITLKFISVSEQDAL 439 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~--~~~~---~E~v~lkFl~~~~~~~L 439 (987)
..++..|+|++|+.+.+.. .....+....|..++..|+|++|.+.|.+.. +... +-.....+...++.+.-
T Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A 108 (327)
T 3cv0_A 29 LSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 108 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 4578889999999887531 1233556677888899999999998888764 1111 22233334445555544
Q ss_pred HHHHHHHhhccCCchHHHHHH--------HHHHH-HH-HHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccC
Q 001978 440 RTFLLRKLDNLAKDDKCQITM--------ISTWA-TE-LYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVL 509 (987)
Q Consensus 440 ~~YL~~kl~~l~~~~~~q~~l--------L~~Wl-~e-lyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~l 509 (987)
..++..-+..-+........+ ...|+ .. +|.. .+ .+.+....+++.+.....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~A~~~~~~~~~~~~~-- 170 (327)
T 3cv0_A 109 LASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA-PN---------------EYRECRTLLHAALEMNPN-- 170 (327)
T ss_dssp HHHHHHHHHTSTTTTTC--------------------CCTTS-HH---------------HHHHHHHHHHHHHHHSTT--
T ss_pred HHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHH-cc---------------cHHHHHHHHHHHHhhCCC--
Confidence 445544333222111110000 00111 11 1110 00 111112222333322111
Q ss_pred CHHH---HHHHHHHcCChhHHHHHHHhH--------hhHHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHH
Q 001978 510 DEAT---TMKLLESYGRVEELVFFASLK--------EQHEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDL 574 (987)
Q Consensus 510 d~~t---v~~ll~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~~~~AL~~l~~~----~~~~~li~k~~~~L 574 (987)
+... +..++...|+.++++.+.+.. .-+..+...|...|++++|++.+.+. ++.....+..+..+
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 1111 223445567777776666542 22455667888899999999888652 23234555555555
Q ss_pred Hh-HChHHHHHHHHc
Q 001978 575 IM-LDAYETVESWMT 588 (987)
Q Consensus 575 l~-~~p~~ti~~l~~ 588 (987)
+. .++++++..+.+
T Consensus 251 ~~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVR 265 (327)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHH
Confidence 43 567777777754
No 251
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=88.55 E-value=22 Score=36.72 Aligned_cols=149 Identities=15% Similarity=0.080 Sum_probs=82.9
Q ss_pred ceeEEEEeC-CEEEEEe-cCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCC
Q 001978 23 VITCMSAGN-DVIVLGT-SKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWS 100 (987)
Q Consensus 23 ~i~~~~v~n-n~l~~~~-~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~ 100 (987)
.+.++++.. +.+|++. .++.|+++|.....+..+..+ .....+..|.+||.|. ++++.. +++..+.++....
T Consensus 122 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~---~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~~g~ 195 (286)
T 1q7f_A 122 HPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS---KHLEFPNGVVVNDKQE-IFISDN--RAHCVKVFNYEGQ 195 (286)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT---TTCSSEEEEEECSSSE-EEEEEG--GGTEEEEEETTCC
T ss_pred CceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCC---CccCCcEEEEECCCCC-EEEEEC--CCCEEEEEcCCCC
Confidence 467888853 3566664 578999999844434444332 1124678999999997 555532 1456666665433
Q ss_pred CceeccCCCC--ceEEEEeecCCCCCCCCcceEEEEcCC-C-cEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEee
Q 001978 101 KPRVLSKLKG--LVVNAVAWNRQQITEASTKEIILGTDT-G-QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETA 176 (987)
Q Consensus 101 k~k~L~klkg--~~i~sVaw~~~~~~~~st~~iLiGt~~-G-~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~ 176 (987)
..+.+.. .| ..+.++++++ .+.+++++.. + .|.....+. +.++.+ ........+.+|.+..
T Consensus 196 ~~~~~~~-~g~~~~p~~i~~d~-------~G~l~v~~~~~~~~i~~~~~~g-----~~~~~~-~~~~~~~~~~~i~~~~- 260 (286)
T 1q7f_A 196 YLRQIGG-EGITNYPIGVGINS-------NGEILIADNHNNFNLTIFTQDG-----QLISAL-ESKVKHAQCFDVALMD- 260 (286)
T ss_dssp EEEEESC-TTTSCSEEEEEECT-------TCCEEEEECSSSCEEEEECTTS-----CEEEEE-EESSCCSCEEEEEEET-
T ss_pred EEEEEcc-CCccCCCcEEEECC-------CCCEEEEeCCCCEEEEEECCCC-----CEEEEE-cccCCCCcceeEEECC-
Confidence 3333321 22 3678899983 2468887754 3 666654221 223332 2322112356777752
Q ss_pred ccCCCceEEEEEECCCeEEEE
Q 001978 177 SLSNGTRYYVMAVTPTRLYSF 197 (987)
Q Consensus 177 ~~~~~~~~~i~ast~~rly~f 197 (987)
+ +.+++++...+++-|
T Consensus 261 ----~-g~l~vs~~~~~v~v~ 276 (286)
T 1q7f_A 261 ----D-GSVVLASKDYRLYIY 276 (286)
T ss_dssp ----T-TEEEEEETTTEEEEE
T ss_pred ----C-CcEEEECCCCeEEEE
Confidence 1 234554566777666
No 252
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=88.47 E-value=20 Score=38.22 Aligned_cols=154 Identities=8% Similarity=0.064 Sum_probs=83.1
Q ss_pred ceeEEEEeC--CEEEEEecCCeEEEEeCC-CCCcee---eEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEe
Q 001978 23 VITCMSAGN--DVIVLGTSKGWLIRHDFG-AGDSYD---IDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTH 96 (987)
Q Consensus 23 ~i~~~~v~n--n~l~~~~~~g~l~ridl~-~~~~~~---~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~ 96 (987)
.+.+++++. ++++.+..++.|..+|+. ...... +..+. ...+..+-++|.|.+++++.. +++....+.
T Consensus 142 ~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~----g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~ 215 (347)
T 3hfq_A 142 HIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA----GFGPRHLVFSPDGQYAFLAGE--LSSQIASLK 215 (347)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT----TCCEEEEEECTTSSEEEEEET--TTTEEEEEE
T ss_pred CceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC----CCCCceEEECCCCCEEEEEeC--CCCEEEEEE
Confidence 367788864 344444567899999994 333322 22331 235678999999999888765 134443333
Q ss_pred cC--CCCcee---ccCCCC-----ceEEEEeecCCCCCCCCcceEEEE-cCCCcEEEEEeccCccccceeeeeeeeCCCC
Q 001978 97 AK--WSKPRV---LSKLKG-----LVVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYIKLLFELNELP 165 (987)
Q Consensus 97 ~~--~~k~k~---L~klkg-----~~i~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~ 165 (987)
.. ..+.+. +....+ ..+.+++|+++ .+.+.+. ..++.|....++.. + .++.+..++...
T Consensus 216 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd------G~~l~v~~~~~~~v~v~~~~~~-g---~~~~~~~~~~~~ 285 (347)
T 3hfq_A 216 YDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD------GHFLYVSNRGYNTLAVFAVTAD-G---HLTLIQQISTEG 285 (347)
T ss_dssp EETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT------SCEEEEEEETTTEEEEEEECGG-G---CEEEEEEEECSS
T ss_pred ecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC------CCEEEEEeCCCCEEEEEEECCC-C---cEEEeEEEecCC
Confidence 22 122222 211111 45889999843 1134343 45687887777642 1 233443343211
Q ss_pred CceeeEEEEeeccCCCceEEEEEECC-CeEEEE
Q 001978 166 EAFMGLQMETASLSNGTRYYVMAVTP-TRLYSF 197 (987)
Q Consensus 166 ~~I~gi~~~~~~~~~~~~~~i~ast~-~rly~f 197 (987)
..+.++.|. .+.++++++... ..+.-|
T Consensus 286 ~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 286 DFPRDFDLD-----PTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp SCCCEEEEC-----TTSSEEEEEETTTTEEEEE
T ss_pred CCcCeEEEC-----CCCCEEEEEEcCCCcEEEE
Confidence 346788875 233566666543 455444
No 253
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=88.29 E-value=6.8 Score=41.08 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHh-HChHHHHHHHHcCCCCCCCcch--hhhh-hcCCCC
Q 001978 537 HEIVVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIM-LDAYETVESWMTTNNLNPRKLI--PAMM-RYSSEP 608 (987)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~l~~~----~~~~~li~k~~~~Ll~-~~p~~ti~~l~~~~~ld~~~li--p~L~-~~~~~~ 608 (987)
+..+...|...|++++|++++.+. ++....+...+..+.. .++++++..+.+.-.++|.... -.+. -|...
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~- 253 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM- 253 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-
Confidence 345667888999999999988642 2324555566655554 4677777777543233333211 1110 01110
Q ss_pred CCCCChHHHHHHHHHHHhhcCC
Q 001978 609 HAKNETHEVIKYLEFCVHRLHN 630 (987)
Q Consensus 609 ~~~~~~~~~~~YLe~li~~~~~ 630 (987)
.....++.+++..+...+.
T Consensus 254 ---g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 254 ---SQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp ---TCHHHHHHHHHHHHHHHTT
T ss_pred ---ccHHHHHHHHHHHHHhCCc
Confidence 1356799999988865543
No 254
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=88.28 E-value=0.18 Score=47.11 Aligned_cols=21 Identities=33% Similarity=0.668 Sum_probs=17.5
Q ss_pred CEEEEcCCChhHHHhHHHHHh
Q 001978 864 PFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 864 ~fvvFpCgH~fH~~CL~~~~~ 884 (987)
..+..+|||.||..|+.....
T Consensus 91 ~~~~~~CgH~fc~~Ci~~~~~ 111 (133)
T 4ap4_A 91 LIVSTECGHVFCSQCLRDSLK 111 (133)
T ss_dssp CEEEETTSBEEEHHHHHHHHH
T ss_pred ceEeCCCCChhhHHHHHHHHH
Confidence 357889999999999987653
No 255
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=88.16 E-value=8.3 Score=43.04 Aligned_cols=135 Identities=9% Similarity=0.166 Sum_probs=84.9
Q ss_pred ceeEEEEeCC--EEEEEecCCeEEEEeC-CCC-----------CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCC
Q 001978 23 VITCMSAGND--VIVLGTSKGWLIRHDF-GAG-----------DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSG 88 (987)
Q Consensus 23 ~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~-----------~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~ 88 (987)
.+..++++|. .++.|..+|.++ +++ ... ....+++| . |+.+.+ .|..|.|+ .
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v-~~~~~l~~~~~~~~~~~~~~~~~~lp------~-V~~l~f--d~~~L~v~-~--- 104 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVV-GELQLLRDHITSDSTPLTFKWEKEIP------D-VIFVCF--HGDQVLVS-T--- 104 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEE-EEHHHHHHHHHSSSCCCCCSEEEECT------T-EEEEEE--ETTEEEEE-E---
T ss_pred cccEEEEcCCCCEEEEeCCCEEEE-EEhhHhhhhhccccccccceEEeeCC------C-eeEEEE--CCCEEEEE-c---
Confidence 4788888865 777777765544 876 221 11233443 3 899999 78999999 5
Q ss_pred CccEEEEecCCC-CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCc
Q 001978 89 GAETFYTHAKWS-KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEA 167 (987)
Q Consensus 89 ~g~~~Y~~~~~~-k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~ 167 (987)
+|....+...+. +...+..+ ...+.++.|.++ .++++|++|.|+-..+..+. ... +. ..
T Consensus 105 ~~~l~v~dv~sl~~~~~~~~~-~~~v~~i~~~~p--------~~av~~~dG~L~v~dl~~~~-----~~~---~~---~~ 164 (388)
T 1xip_A 105 RNALYSLDLEELSEFRTVTSF-EKPVFQLKNVNN--------TLVILNSVNDLSALDLRTKS-----TKQ---LA---QN 164 (388)
T ss_dssp SSEEEEEESSSTTCEEEEEEC-SSCEEEEEECSS--------EEEEEETTSEEEEEETTTCC-----EEE---EE---ES
T ss_pred CCcEEEEEchhhhccCcccee-ecceeeEEecCC--------CEEEEECCCCEEEEEccCCc-----ccc---cc---CC
Confidence 566666654332 22333222 245778877743 29999999999998887541 111 22 35
Q ss_pred eeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 168 FMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
|+++.|.. .+ .+++..+..+.+|.
T Consensus 165 Vs~v~WSp------kG-~~vg~~dg~i~~~~ 188 (388)
T 1xip_A 165 VTSFDVTN------SQ-LAVLLKDRSFQSFA 188 (388)
T ss_dssp EEEEEECS------SE-EEEEETTSCEEEEE
T ss_pred ceEEEEcC------Cc-eEEEEcCCcEEEEc
Confidence 99999963 23 45556667677673
No 256
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=88.14 E-value=0.1 Score=47.88 Aligned_cols=34 Identities=21% Similarity=0.612 Sum_probs=26.4
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
....|.+|...+.. |.. .+|||.||..|+.....
T Consensus 22 ~~~~C~IC~~~~~~------------------p~~-~~CgH~fC~~Ci~~~~~ 55 (116)
T 1rmd_A 22 KSISCQICEHILAD------------------PVE-TSCKHLFCRICILRCLK 55 (116)
T ss_dssp HHTBCTTTCSBCSS------------------EEE-CTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCCCcHhcC------------------cEE-cCCCCcccHHHHHHHHh
Confidence 34679999877654 444 69999999999987763
No 257
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=88.12 E-value=5.6 Score=41.35 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=39.8
Q ss_pred HHHHchhhHHHHHHhcCC------------chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRD------------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~------------~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..++..|+|++|+.+.+. +.....++...|..++..|+|++|...|.+..
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 457788999999988653 22345678889999999999999999988765
No 258
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=88.11 E-value=4.9 Score=38.98 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=35.9
Q ss_pred HHchhhHHHHHH---hcC-CchhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALA---NCR-DPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~---~~~-~~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
++..|+|++|.+ ... ++.....++...|..++..|+|++|...|.+..
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 467899999999 543 455667888899999999999999999988765
No 259
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=88.10 E-value=17 Score=36.44 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=40.1
Q ss_pred HHHchhhHHHHHHhcCC-----ch--hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD-----PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~~--~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+++.|+|++|+...+. |. .........|..++..|+|++|+..|.+..
T Consensus 13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 68 (225)
T 2yhc_A 13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 68 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 48899999999988652 32 235678888999999999999999998764
No 260
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=88.04 E-value=24 Score=39.08 Aligned_cols=158 Identities=20% Similarity=0.276 Sum_probs=95.9
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeC-C-----CCCceeeEcCC--CCCCccceeEEEeCCCCCeEEEEeecCCCccEEE
Q 001978 23 VITCMSAGNDVIVLGTSKGWLIRHDF-G-----AGDSYDIDLSA--GRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFY 94 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~g~l~ridl-~-----~~~~~~~~l~~--~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y 94 (987)
.|..++...+..++.+.+|.||-+=. . .........|. .......+..+.+...+.|.++-++ +|.+|-
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~---~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSS---EGEVYS 130 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEET---TSCEEE
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcC---CCCEEE
Confidence 47899999999999999999999933 1 11111222221 1112345666788888999998888 899998
Q ss_pred EecCC------------CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC-----cccccee--
Q 001978 95 THAKW------------SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK-----DKREKYI-- 155 (987)
Q Consensus 95 ~~~~~------------~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~-----~~~e~~~-- 155 (987)
+..+. ..++.+..+.+..|..|+=... ..++=|++|.||-.--+.. ...+...
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~--------hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p 202 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA--------HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKP 202 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--------EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEE
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC--------eEEEEeCCCeEEEeCCCCCCCcCCCCCcccccc
Confidence 86422 2456677777888888876521 3455588999998654321 0111111
Q ss_pred eeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 156 KLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 156 k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
+.+-.+.. .+|..|..- ......++++...++|.|-
T Consensus 203 ~~v~~~~~--~~v~~ia~G-----~g~~~t~~l~~~G~v~~wG 238 (389)
T 3kci_A 203 KLVEALQG--HRVVDIACG-----SGDAQTLCLTDDDTVWSWG 238 (389)
T ss_dssp EECGGGTT--SCEEEEEEC-----CSSCEEEEEETTTEEEEEE
T ss_pred eEecccCC--CeEEEEEEc-----CCCcEEEEEccCCEEEEEe
Confidence 11211221 234444431 1124566668899999994
No 261
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=88.03 E-value=9.2 Score=39.86 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=39.7
Q ss_pred HHHHchhhHHHHHHhcCC----------chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRD----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~----------~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..+...|+|++|+++.+. +.....++...|..++..|+|++|...|.+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 110 (338)
T 3ro2_A 51 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 110 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 457788999999988653 22345678889999999999999999988765
No 262
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=87.89 E-value=32 Score=36.86 Aligned_cols=118 Identities=15% Similarity=0.123 Sum_probs=67.2
Q ss_pred CceeEEEEeCCEEEEEe-cCCeEEEEeC-CCCCceeeE---cCCC------CCCccceeEEEeCCCCCeEEEEeecCCCc
Q 001978 22 GVITCMSAGNDVIVLGT-SKGWLIRHDF-GAGDSYDID---LSAG------RPGEQSIHKVFVDPGGSHCIATIVGSGGA 90 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~-~~g~l~ridl-~~~~~~~~~---l~~~------~~~~~~i~~i~lDp~G~hlli~~~~~~~g 90 (987)
...+++++.++.|+++- .+|.|..+|+ ....+..+. .... +.....++.+.++|.|.+++++.. +++
T Consensus 100 ~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~--~~~ 177 (361)
T 3scy_A 100 ADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL--GTD 177 (361)
T ss_dssp SCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET--TTT
T ss_pred CCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeC--CCC
Confidence 34678888777777776 5789999999 333222211 1100 111235688999999999988764 134
Q ss_pred cEEEEe--cCCC----C-c------eeccCCCCceEEEEeecCCCCCCCCcceEEEEc-CCCcEEEEEecc
Q 001978 91 ETFYTH--AKWS----K-P------RVLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDE 147 (987)
Q Consensus 91 ~~~Y~~--~~~~----k-~------k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~ 147 (987)
..+-+. .... + . .....-.+....+++|+++ .+.+.++. .+|.|....+..
T Consensus 178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd------g~~l~v~~~~~~~v~v~~~~~ 242 (361)
T 3scy_A 178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD------GKFAYLINEIGGTVIAFRYAD 242 (361)
T ss_dssp EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT------SSEEEEEETTTCEEEEEEEET
T ss_pred EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC------CCEEEEEcCCCCeEEEEEecC
Confidence 443332 2221 1 1 1111123556889999843 12355555 468888877763
No 263
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=87.73 E-value=6.3 Score=50.09 Aligned_cols=148 Identities=9% Similarity=0.052 Sum_probs=94.9
Q ss_pred ceeEEEEe-CC--EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE-EEecC
Q 001978 23 VITCMSAG-ND--VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF-YTHAK 98 (987)
Q Consensus 23 ~i~~~~v~-nn--~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~-Y~~~~ 98 (987)
.+.+++.+ .+ .++++. .|.|+.+|+....... +.. .....+..+... .|.+++.++. ++..+ -+...
T Consensus 297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~--~~~--~~~~~~~~~~~s-dg~~l~~~s~---~~~l~~~~d~~ 367 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK--VPE--PLRIRYVRRGGD-TKVAFIHGTR---EGDFLGIYDYR 367 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE--CSC--CSCEEEEEECSS-SEEEEEEEET---TEEEEEEEETT
T ss_pred ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE--ccC--CCcceEEeeeEc-CCCeEEEEEC---CCceEEEEECC
Confidence 47888888 43 555555 8899999993333322 221 112267778778 8988888776 56555 55665
Q ss_pred CCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeecc
Q 001978 99 WSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (987)
Q Consensus 99 ~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (987)
..+.+.+. -.+..+.+++|+++ .+.++.++.+|.|+...+..+ ..+.+..-. .++|.++.|.
T Consensus 368 ~~~~~~l~-~~~~~~~~~~~SpD------G~~la~~~~~~~v~~~d~~tg-----~~~~~~~~~--~~~v~~~~~S---- 429 (1045)
T 1k32_A 368 TGKAEKFE-ENLGNVFAMGVDRN------GKFAVVANDRFEIMTVDLETG-----KPTVIERSR--EAMITDFTIS---- 429 (1045)
T ss_dssp TCCEEECC-CCCCSEEEEEECTT------SSEEEEEETTSEEEEEETTTC-----CEEEEEECS--SSCCCCEEEC----
T ss_pred CCCceEec-CCccceeeeEECCC------CCEEEEECCCCeEEEEECCCC-----ceEEeccCC--CCCccceEEC----
Confidence 55666666 34468999999943 236778888999998777543 134443323 3568888885
Q ss_pred CCCceEEEEEECC----------CeEEEEe
Q 001978 179 SNGTRYYVMAVTP----------TRLYSFT 198 (987)
Q Consensus 179 ~~~~~~~i~ast~----------~rly~f~ 198 (987)
.+.+++++++.. ..+|.|.
T Consensus 430 -pDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 430 -DNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp -TTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred -CCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 233677766542 3677674
No 264
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=87.56 E-value=3.7 Score=45.59 Aligned_cols=112 Identities=5% Similarity=-0.108 Sum_probs=71.9
Q ss_pred EEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCC--------CCCeEEEEeecCCCccEEEEecC
Q 001978 28 SAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDP--------GGSHCIATIVGSGGAETFYTHAK 98 (987)
Q Consensus 28 ~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp--------~G~hlli~~~~~~~g~~~Y~~~~ 98 (987)
...+++++-|..+++|..+|. .++......+....+=...|..+-..| .|+.++.++. |+...-++..
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~---D~tv~~Wd~~ 174 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD---DCTLIIWRLT 174 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET---TSEEEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC---CCeEEEEECC
Confidence 344557788888999999999 444332222221112246889998877 4666666666 8888888754
Q ss_pred CCC-ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 99 WSK-PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 99 ~~k-~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
..+ ...+... .-.|.+|+|++. ....++.|+.+|.|....+..+
T Consensus 175 ~~~~~~~~~~~-~~~v~~v~~~p~-----~~~~l~~~~~d~~v~~wd~~t~ 219 (393)
T 4gq1_A 175 DEGPILAGYPL-SSPGISVQFRPS-----NPNQLIVGERNGNIRIFDWTLN 219 (393)
T ss_dssp TTEEEEEEEEC-SSCEEEEEEETT-----EEEEEEEEETTSEEEEEETTCC
T ss_pred CCceeeeecCC-CCCcEEEEECCC-----CCceEEecCCCCEEEEEECCCC
Confidence 432 2333332 347999999943 1235888999999888776543
No 265
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=87.28 E-value=4.6 Score=40.68 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=40.1
Q ss_pred HHHchhhHHHHHHhcCC-----chh------HhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD-----PLQ------RDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~~~------~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+...|+|++|+++.+. |.. ...++...|..++..|+|++|...|.+..
T Consensus 47 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 106 (258)
T 3uq3_A 47 AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 57888999999998763 111 14788899999999999999999998876
No 266
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=87.23 E-value=0.053 Score=49.95 Aligned_cols=34 Identities=21% Similarity=0.513 Sum_probs=26.3
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
..-.|.+|...+.. |++..+|||.|+..|+....
T Consensus 21 ~~~~C~IC~~~~~~------------------pv~~~~CgH~fC~~Ci~~~~ 54 (117)
T 1jm7_B 21 KLLRCSRCTNILRE------------------PVCLGGCEHIFCSNCVSDCI 54 (117)
T ss_dssp HTTSCSSSCSCCSS------------------CBCCCSSSCCBCTTTGGGGT
T ss_pred hCCCCCCCChHhhC------------------ccEeCCCCCHHHHHHHHHHh
Confidence 35689999877655 54444999999999998764
No 267
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=87.04 E-value=11 Score=36.91 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=51.3
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc--CCC---ChHHHHHHhcCc-ChHHHH
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YIL---SFEEITLKFISV-SEQDAL 439 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~--~~~---~~E~v~lkFl~~-~~~~~L 439 (987)
.++..|+|++|+++.+.. .....++...|..++..|+|++|.+.|.+.. ... .+-.....+... ++.+.-
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A 96 (225)
T 2vq2_A 17 EYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAES 96 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHH
Confidence 477889999999987531 1224577788999999999999999998875 111 122233334455 655555
Q ss_pred HHHHHHHhh
Q 001978 440 RTFLLRKLD 448 (987)
Q Consensus 440 ~~YL~~kl~ 448 (987)
..++..-+.
T Consensus 97 ~~~~~~~~~ 105 (225)
T 2vq2_A 97 MAYFDKALA 105 (225)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 555554444
No 268
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=86.95 E-value=24 Score=38.95 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=94.5
Q ss_pred EeCCEEEEEecCCeEEEEeC-C--C-C----CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC--
Q 001978 29 AGNDVIVLGTSKGWLIRHDF-G--A-G----DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK-- 98 (987)
Q Consensus 29 v~nn~l~~~~~~g~l~ridl-~--~-~----~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~-- 98 (987)
..+.++++.+++|.|-|..+ . + . ....+.+. .+..+..++.-.+..++++-|+ .|..|.+...
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk----e~D~l~~~~~~~t~d~ll~fT~---~G~~~~~~~~ei 77 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK----EEDFIDQLWLVNTHDTLLTFTS---SGKVFWLPVHQL 77 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS----CCCCEEEEEEECTTCEEEEEET---TSEEEEEEGGGS
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC----CCCEEEEEEEecCCCEEEEEeC---CCeEEEEEHHHC
Confidence 35678999999999999976 1 1 1 12233332 2467888888777788888888 8999988731
Q ss_pred -----CCCceeccC---C-CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCcee
Q 001978 99 -----WSKPRVLSK---L-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM 169 (987)
Q Consensus 99 -----~~k~k~L~k---l-kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~ 169 (987)
..+-.++.+ | .|-.|.++.--+.. . ....+|+.|++|.+.-+.+..-...-+.=...++|.+. ..+.
T Consensus 78 p~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~-~--~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~-d~lv 153 (370)
T 3l6v_A 78 PEAGSNARGRPIINWIPLESGERVQAVLPVREY-A--DNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEG-DALV 153 (370)
T ss_dssp CBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCC-C--TTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTT-CCEE
T ss_pred cCCCcccCCcCHhhccCCCCCCEEEEEEEeccC-C--CCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCC-CEEE
Confidence 123333322 2 34455555433221 1 12479999999999988875321100111233466542 4566
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 170 GLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
++.... +...++++|...+++.|.-
T Consensus 154 ~v~~~~-----~~~~i~l~T~~G~~irf~~ 178 (370)
T 3l6v_A 154 GVALTD-----GDRDVLLFASNGKTVRFGE 178 (370)
T ss_dssp EEEEEC-----SCCEEEEEETTSEEEEEEG
T ss_pred EEEEeC-----CCceEEEEeCCCeEEEEEc
Confidence 665542 2346888899999998853
No 269
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=86.91 E-value=11 Score=38.51 Aligned_cols=106 Identities=10% Similarity=0.085 Sum_probs=64.0
Q ss_pred ceeEEEEeC-CEEEE-E-ecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 23 VITCMSAGN-DVIVL-G-TSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 23 ~i~~~~v~n-n~l~~-~-~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
...++++.. +.+|+ + ..+|.|+++|........+... +...+..|.+||.|. ++++.. ++..+.++...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~p~~i~~~~~g~-l~v~~~---~~~i~~~d~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN----GLYQPQGLAVDGAGT-VYVTDF---NNRVVTLAAGS 96 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCC----SCCSCCCEEECTTCC-EEEEET---TTEEEEECTTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeC----CcCCcceeEECCCCC-EEEEcC---CCEEEEEeCCC
Confidence 457888853 46777 6 6779999999832222222111 124568899999998 777654 46777676655
Q ss_pred CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEc-CCCcEEEE
Q 001978 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEM 143 (987)
Q Consensus 100 ~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~ 143 (987)
.....+..-....+.++++++ .+.+.+++ .+|.|+..
T Consensus 97 ~~~~~~~~~~~~~p~~i~~~~-------~g~l~v~~~~~~~i~~~ 134 (270)
T 1rwi_B 97 NNQTVLPFDGLNYPEGLAVDT-------QGAVYVADRGNNRVVKL 134 (270)
T ss_dssp SCCEECCCCSCSSEEEEEECT-------TCCEEEEEGGGTEEEEE
T ss_pred ceEeeeecCCcCCCcceEECC-------CCCEEEEECCCCEEEEE
Confidence 444433211114688999983 23577764 45777766
No 270
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=86.78 E-value=0.18 Score=48.02 Aligned_cols=37 Identities=24% Similarity=0.665 Sum_probs=29.3
Q ss_pred cccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 829 VIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 829 ~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
.+...-.|.+|...+.. | +.-+|||.|+..|+.....
T Consensus 27 ~l~~~~~C~IC~~~~~~------------------p-v~~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRR------------------P-FQAQCGHRYCSFCLASILS 63 (141)
T ss_dssp GCCGGGBCTTTCSBCSS------------------E-EECTTSCEEEHHHHHHHGG
T ss_pred cCCcCcCCCCCChhhcC------------------c-EECCCCCccCHHHHHHHHh
Confidence 34556789999987766 5 4469999999999998764
No 271
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=86.68 E-value=14 Score=37.40 Aligned_cols=47 Identities=11% Similarity=-0.081 Sum_probs=36.7
Q ss_pred HchhhHHHHHHhcCC--------chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 372 LDMKEYAAALANCRD--------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 372 l~~~~fe~Al~~~~~--------~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
...|+|++|++..+. +.....++...|..++..|+|++|...|.+..
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 70 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 345788888877542 23456788899999999999999999998865
No 272
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=86.48 E-value=5.6 Score=43.62 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=37.1
Q ss_pred HHHchhhHHHHHHhcCC-----------chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD-----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----------~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.|...|+|++|+.+.+. ......++...|..+...|+|++|...|.+..
T Consensus 152 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 152 SYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 46677888888877642 11234677788999999999999999988765
No 273
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=86.28 E-value=13 Score=40.22 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=39.5
Q ss_pred HHHHchhhHHHHHHhcCC----------chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRD----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~----------~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..+...|+|++|+.+.+. +.....++...|..++..|+|++|...|.+..
T Consensus 55 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 55 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 357778999999987652 22345678889999999999999999988765
No 274
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=86.23 E-value=0.22 Score=43.68 Aligned_cols=31 Identities=42% Similarity=0.815 Sum_probs=25.6
Q ss_pred cccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 835 DCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 835 ~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
-|+.|+.|+...| | +.||+|+|=.+|.....
T Consensus 3 fC~~C~~Pi~iyg---R---------------mIPCkHvFCydCa~~~~ 33 (101)
T 3vk6_A 3 FCDKCGLPIKVYG---R---------------MIPCKHVFCYDCAILHE 33 (101)
T ss_dssp BCTTTCSBCSEEE---E---------------EETTCCEEEHHHHHHHH
T ss_pred ecCccCCCeEEEe---e---------------eccccccHHHHHHHHHH
Confidence 4999999998844 3 78999999999997653
No 275
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=86.18 E-value=23 Score=38.95 Aligned_cols=164 Identities=10% Similarity=0.044 Sum_probs=82.1
Q ss_pred CCCceeEEEEeC---CEEEEEecCCeEEEEeC-CCCCceeeEcC-CC-------------------CCCccceeEE-EeC
Q 001978 20 GRGVITCMSAGN---DVIVLGTSKGWLIRHDF-GAGDSYDIDLS-AG-------------------RPGEQSIHKV-FVD 74 (987)
Q Consensus 20 ~~~~i~~~~v~n---n~l~~~~~~g~l~ridl-~~~~~~~~~l~-~~-------------------~~~~~~i~~i-~lD 74 (987)
....+.+++.+. +.++.|..+|+|..+|+ .+....+..-. .. ......+..+ |-.
T Consensus 185 ~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~ 264 (393)
T 4gq1_A 185 LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG 264 (393)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEET
T ss_pred CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeec
Confidence 456789999874 36888889999999999 44432221100 00 0112344554 446
Q ss_pred CCCCeEEEEeecCCCccEEEEecCCCC-ceeccCCCCceEEEEeecCCCC-------------CCCCcceEEE-EcCCCc
Q 001978 75 PGGSHCIATIVGSGGAETFYTHAKWSK-PRVLSKLKGLVVNAVAWNRQQI-------------TEASTKEIIL-GTDTGQ 139 (987)
Q Consensus 75 p~G~hlli~~~~~~~g~~~Y~~~~~~k-~k~L~klkg~~i~sVaw~~~~~-------------~~~st~~iLi-Gt~~G~ 139 (987)
|.|..++.++. ++....++....+ .+.+.. ....+.++++.+... .....+.+++ |+.+|.
T Consensus 265 ~dg~~l~s~s~---d~~i~vwd~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~ 340 (393)
T 4gq1_A 265 SDGSGILAMCK---SGAWLRWNLFANNDYNEISD-STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL 340 (393)
T ss_dssp TTTCEEEEECT---TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE
T ss_pred CCCCEEEEEeC---CCCEEEEECccCCCCceEee-ecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCE
Confidence 88998887776 6766655543221 111111 111233333321100 0011234444 677899
Q ss_pred EEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCC-eEEEEec
Q 001978 140 LHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPT-RLYSFTG 199 (987)
Q Consensus 140 i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~-rly~f~g 199 (987)
|....+..+. ......... .+|.++.|.. +.++++.++... .|++..|
T Consensus 341 V~lwd~~~~~----~~~~~~~~~---~~V~svafsp-----dG~~LA~as~~Gv~lvrL~g 389 (393)
T 4gq1_A 341 IQLINTYEKD----SNSIPIQLG---MPIVDFCWHQ-----DGSHLAIATEGSVLLTRLMG 389 (393)
T ss_dssp EEEEETTCTT----CCEEEEECS---SCEEEEEECT-----TSSEEEEEESSEEEEEEEGG
T ss_pred EEEEECCCCc----EEEEecCCC---CcEEEEEEcC-----CCCEEEEEeCCCeEEEEEeC
Confidence 9887765431 122222222 5799999962 346888877644 4555544
No 276
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=85.97 E-value=15 Score=38.84 Aligned_cols=122 Identities=7% Similarity=0.009 Sum_probs=68.7
Q ss_pred eCCEEEE-EecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCc--eec
Q 001978 30 GNDVIVL-GTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKP--RVL 105 (987)
Q Consensus 30 ~nn~l~~-~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~--k~L 105 (987)
..+.+++ +..+|.|..+|+ .......+..+ ...+ .+-++|.|.+++++.. +++..+-+.....+. +.+
T Consensus 8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-----~~~~-~~~~s~dg~~l~~~~~--~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 8 TSNFGIVVEQHLRRISFFSTDTLEILNQITLG-----YDFV-DTAITSDCSNVVVTSD--FCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp CCCEEEEEEGGGTEEEEEETTTCCEEEEEECC-----CCEE-EEEECSSSCEEEEEES--TTCEEEEEECSSSSCEEEEE
T ss_pred CCCEEEEEecCCCeEEEEeCcccceeeeEEcc-----CCcc-eEEEcCCCCEEEEEeC--CCCeEEEEECCCCceeEEec
Confidence 3455444 446789999999 44444555544 2344 8889999999888876 245666666655543 233
Q ss_pred cCCCCceEEEEeecCCCCCCCCcceEEEEcCCC---cEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 106 SKLKGLVVNAVAWNRQQITEASTKEIILGTDTG---QLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 106 ~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G---~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
.. .+....+++|+++ .+.++++...| .|+...+..+ + ....+... ....++.|.
T Consensus 80 ~~-~~~~~~~~~~s~d------g~~l~~~~~~~~~~~i~v~d~~~~----~-~~~~~~~~---~~~~~~~~s 136 (331)
T 3u4y_A 80 QE-GQSSMADVDITPD------DQFAVTVTGLNHPFNMQSYSFLKN----K-FISTIPIP---YDAVGIAIS 136 (331)
T ss_dssp EE-CSSCCCCEEECTT------SSEEEECCCSSSSCEEEEEETTTT----E-EEEEEECC---TTEEEEEEC
T ss_pred cc-CCCCccceEECCC------CCEEEEecCCCCcccEEEEECCCC----C-eEEEEECC---CCccceEEC
Confidence 31 2223333899842 12344333332 7887766543 1 22222333 335778775
No 277
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=85.88 E-value=16 Score=38.36 Aligned_cols=64 Identities=6% Similarity=-0.017 Sum_probs=42.2
Q ss_pred ceeEEEEe--CCEEEEEe------------cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC
Q 001978 23 VITCMSAG--NDVIVLGT------------SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS 87 (987)
Q Consensus 23 ~i~~~~v~--nn~l~~~~------------~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~ 87 (987)
.+.+++++ ++.++++. .++.|.++|+ ....+..+..+ ..+..+-++|.|.+++++ +
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~-~-- 153 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP------RQITMLAWARDGSKLYGL-G-- 153 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC------SSCCCEEECTTSSCEEEE-S--
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC------CCcceeEECCCCCEEEEe-C--
Confidence 35667776 45788875 4689999999 44434444432 346778889999988877 3
Q ss_pred CCccEEEEec
Q 001978 88 GGAETFYTHA 97 (987)
Q Consensus 88 ~~g~~~Y~~~ 97 (987)
+..+.+..
T Consensus 154 --~~i~~~d~ 161 (337)
T 1pby_B 154 --RDLHVMDP 161 (337)
T ss_dssp --SSEEEEET
T ss_pred --CeEEEEEC
Confidence 45554443
No 278
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.85 E-value=0.28 Score=43.06 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=26.4
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEE-cCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVF-PCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvF-pCgH~fH~~CL~~~~ 883 (987)
...|.+|-..+.. . .++.+ +|||.|..+|+..++
T Consensus 5 ~~~C~IC~~~~~~-----~------------~~~~l~~CgH~FC~~Cl~~~~ 39 (94)
T 1wim_A 5 SSGCKLCLGEYPV-----E------------QMTTIAQCQCIFCTLCLKQYV 39 (94)
T ss_dssp BCCCSSSCCCCBG-----G------------GEEEETTTTEEEEHHHHHHHH
T ss_pred CcCCcccCccccc-----c------------cceEcCCCCCcccHHHHHHHH
Confidence 4579999876555 2 45555 699999999999886
No 279
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=85.76 E-value=20 Score=38.79 Aligned_cols=154 Identities=10% Similarity=0.101 Sum_probs=92.5
Q ss_pred eCCEEEEEecCCeEEEEeC---CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC-------
Q 001978 30 GNDVIVLGTSKGWLIRHDF---GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW------- 99 (987)
Q Consensus 30 ~nn~l~~~~~~g~l~ridl---~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~------- 99 (987)
.+.++++.+++|.|-|..+ .......+.+ + .++.+..++.-.+..++++-|+ .|..|.+....
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~l--k--e~D~l~~~~~~~t~d~ll~fT~---~Gr~~~~~~~elp~~~r~ 76 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNGQDFAM--K--DTDRLLAMLEMNTKDVLLLFTN---KGNYLYCPVHELPDIRWK 76 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTTCCCCC--C--TTCCEEEEEEEETTSEEEEEET---TSEEEEEEGGGSCBCCTT
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCcccccc--C--CCCEEEEEEEECCCCEEEEEEC---CCEEEEEEHHHCcCCCCC
Confidence 3567899999999999976 1111111212 1 2467778888778888999888 89999886411
Q ss_pred CCceeccCC----CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCcccc-ceeeeeeeeCCCCCceeeEEEE
Q 001978 100 SKPRVLSKL----KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKRE-KYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 100 ~k~k~L~kl----kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e-~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
.+-.++.++ .|-.|.++.--++. . ....+++.|++|.+.-+.+..-...- +.=...+++.+. ..+.++...
T Consensus 77 a~G~~i~~~i~L~~~e~Iv~~~~~~~~-~--~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~ 152 (323)
T 1wp5_A 77 DLGQHIANIIPIDRDEEIIKAIPINDF-E--LNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLT 152 (323)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCT-T--SSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEE
T ss_pred CCCcChhhccCCCCCCEEEEEEEeccc-C--CCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEe
Confidence 233333332 34345554333221 1 12359999999999988875221100 111233466653 456666554
Q ss_pred eeccCCCceEEEEEECCCeEEEEec
Q 001978 175 TASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 175 ~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
. +...++++|...+++.|..
T Consensus 153 ~-----~~~~i~l~T~~G~~irf~~ 172 (323)
T 1wp5_A 153 D-----GMNELFLVTHNGYALWFDE 172 (323)
T ss_dssp C-----SCSEEEEEETTSEEEEEEG
T ss_pred C-----CCCEEEEEeCCCcEEEEEH
Confidence 2 2246778899999998864
No 280
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=85.57 E-value=4.9 Score=42.70 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=39.5
Q ss_pred HHHHHchhhHHHHHHhcCCch-hHhHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 001978 368 WKVYLDMKEYAAALANCRDPL-QRDQVYLVQAEAAFATKDFHRAASFYAKI 417 (987)
Q Consensus 368 W~~ll~~~~fe~Al~~~~~~~-~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~ 417 (987)
-+.|+..|+|++|+...+... .........|.++...|++++|.+.+.+.
T Consensus 41 ~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~l 91 (291)
T 3mkr_A 41 YRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDRE 91 (291)
T ss_dssp HHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 467899999999998876422 23456677889999999999999998874
No 281
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=85.41 E-value=6.3 Score=40.48 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=40.6
Q ss_pred HHHchhhHHHHHHhcCC-----ch--hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD-----PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~~--~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+++.|+|++|+...+. |. ....++...|.-++..|+|++|...|.+..
T Consensus 24 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 79 (261)
T 3qky_A 24 EFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFI 79 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 47889999999998652 22 236788899999999999999999998875
No 282
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=85.23 E-value=8.1 Score=39.43 Aligned_cols=48 Identities=10% Similarity=0.107 Sum_probs=24.3
Q ss_pred HHchhhHHHHHHhcCC----c---hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRD----P---LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~----~---~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
++..|+|++|++.++. + ......+...|..+...|+|++|.+.|.+..
T Consensus 47 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~ 101 (272)
T 3u4t_A 47 YYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV 101 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4555555555555431 1 1122334555555666666666666555543
No 283
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=85.19 E-value=9.2 Score=41.75 Aligned_cols=104 Identities=17% Similarity=0.176 Sum_probs=63.0
Q ss_pred eEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCce
Q 001978 25 TCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPR 103 (987)
Q Consensus 25 ~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k 103 (987)
...++.++.++++..+|.|+.+|. .....-+.+.+ ....+.++ +.++++.+. +|..+.++...-+.+
T Consensus 233 ~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-------~~~~~~~~--~~~l~~~~~---~g~l~~~d~~tG~~~ 300 (376)
T 3q7m_A 233 TTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-------SVNDFIVD--GNRIYLVDQ---NDRVMALTIDGGVTL 300 (376)
T ss_dssp CCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-------CEEEEEEE--TTEEEEEET---TCCEEEEETTTCCEE
T ss_pred CCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-------CCCCceEE--CCEEEEEcC---CCeEEEEECCCCcEE
Confidence 445678899999999999999999 55544443332 12334443 667888777 677877776543321
Q ss_pred e-ccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 104 V-LSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 104 ~-L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
- ...+.+..+.+.+. ..+.+.+|+.+|.|+......+
T Consensus 301 w~~~~~~~~~~~~~~~--------~~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 301 WTQSDLLHRLLTSPVL--------YNGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp EEECTTTTSCCCCCEE--------ETTEEEEECTTSEEEEEETTTC
T ss_pred EeecccCCCcccCCEE--------ECCEEEEEeCCCeEEEEECCCC
Confidence 1 11111211211111 1357999999998888765543
No 284
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=85.04 E-value=0.14 Score=55.22 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=25.0
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEE--EcCCChhHHHhHHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYV--FPCGHAFHAQCLIAHV 883 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvv--FpCgH~fH~~CL~~~~ 883 (987)
....|++|--.+...+ ..+ ..+. =+|||.||..||.+-.
T Consensus 307 ~~~ECaICys~~l~~g---~lP----------dk~C~n~~C~h~FH~~CL~kWL 347 (381)
T 3k1l_B 307 EELRCNICFAYRLDGG---EVP----------LVSCDNAKCVLKCHAVCLEEWF 347 (381)
T ss_dssp SCCSCSSSCCSSCTTC---CCC----------CBCCSCTTCCCCBCSGGGHHHH
T ss_pred CCccCcccceeecCCC---CCc----------cccccCCccCCccchHHHHHHH
Confidence 3457999987655411 100 1111 1699999999998875
No 285
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=85.02 E-value=13 Score=40.74 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=33.2
Q ss_pred HHHHHHhcCCc----------hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 377 YAAALANCRDP----------LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 377 fe~Al~~~~~~----------~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
|++|+++.+.. .....++...|..++..|+|++|.+.|.+..
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99998886531 2234578889999999999999999988775
No 286
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=84.76 E-value=29 Score=37.21 Aligned_cols=155 Identities=12% Similarity=0.133 Sum_probs=90.9
Q ss_pred eCCEEEEEecCCeEEEEeC-CCCCce----ee-EcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC----
Q 001978 30 GNDVIVLGTSKGWLIRHDF-GAGDSY----DI-DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW---- 99 (987)
Q Consensus 30 ~nn~l~~~~~~g~l~ridl-~~~~~~----~~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~---- 99 (987)
.+.++++.+++|.|-|..+ .-.... .+ -+.. . .++.+..++.-.+..++++.|+ .|..|.+....
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~l-k-e~D~l~~~~~~~~~~~ll~~T~---~G~~~~~~~~~ip~~ 81 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL-N-DGDEIVIALCVNTHDYLFMISN---EGKLYLINAYEIKDS 81 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCC-C-TTCCEEEEEEEETTCEEEEEET---TSEEEEEEGGGSCC-
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceeccc-C-CCCEEEEEEEECCCCEEEEEEC---CCeEEEEEHHHCCCC
Confidence 5668999999999999977 211110 11 1111 1 2356777777667778888888 89999887521
Q ss_pred ---CCcee---ccCC-CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCc-cccceeeeeeeeCCCCCceeeE
Q 001978 100 ---SKPRV---LSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKD-KREKYIKLLFELNELPEAFMGL 171 (987)
Q Consensus 100 ---~k~k~---L~kl-kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~-~~e~~~k~v~~l~~~~~~I~gi 171 (987)
.+-.+ +-++ .|-.|.++.-.+.. .+...+|+.|++|.++-+.+..-. ...+- ....++.+ .+.+.++
T Consensus 82 ~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~---~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G-~~~i~L~~-~d~lv~~ 156 (312)
T 1suu_A 82 SRASKGQNISELINLGDQEEILTIKNSKDL---TDDAYLLLTTASGKIARFESTDFKAVKSRG-VIVIKLND-KDFVTSA 156 (312)
T ss_dssp ------CBGGGTSCCCTTCCEEEEEEESCC---CTTCEEEEEETTSEEEEEEGGGGCC----C-EECBCCCT-TCCEEEE
T ss_pred CccCCCcChhhccCCCCCCEEEEEEEeccC---CCCCEEEEEeCCCeEEEEEHHHhhccCCCc-EEEEecCC-CCEEEEE
Confidence 11111 1112 24445555443221 123479999999999998875321 01111 22346665 3567777
Q ss_pred EEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 172 QMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
.... + ...++++|...+...|.-
T Consensus 157 ~~~~----~-~~~i~l~T~~G~~~r~~~ 179 (312)
T 1suu_A 157 EIVF----K-DEKVICLSKKGSAFIFNS 179 (312)
T ss_dssp EEEC----T-TCEEEEEETTSEEEEEEG
T ss_pred EEeC----C-CCEEEEEeCCCcEEEEEH
Confidence 6542 2 346888899999998854
No 287
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=84.69 E-value=12 Score=40.35 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=67.6
Q ss_pred ceeEEEEeCC--EEEEEe-cCCeEEEEeCCCCCceeeE-cCCCCCCccceeEEEeCCCCCeEEEEeecCCC--ccEEE--
Q 001978 23 VITCMSAGND--VIVLGT-SKGWLIRHDFGAGDSYDID-LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG--AETFY-- 94 (987)
Q Consensus 23 ~i~~~~v~nn--~l~~~~-~~g~l~ridl~~~~~~~~~-l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~--g~~~Y-- 94 (987)
...+++++.+ .++++. .+|.|..+|+.......+. ++...........+-++|.|++++++.. + +...-
T Consensus 212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~---~~~~~i~v~~ 288 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR---LKADGVAIFK 288 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC---SSSCEEEEEE
T ss_pred CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC---CCCCEEEEEE
Confidence 3578888765 787777 5889999999322222221 2211111234678999999999988765 3 33322
Q ss_pred EecCCCCceeccCCC-CceEEEEeecCCCCCCCCcceEEEEc-CCCcEEEEEecc
Q 001978 95 THAKWSKPRVLSKLK-GLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDE 147 (987)
Q Consensus 95 ~~~~~~k~k~L~klk-g~~i~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~ 147 (987)
+.....+.+.+..+. |..+.+++|+++ .+.++++. .++.|..+.++.
T Consensus 289 ~~~~~g~~~~~~~~~~g~~~~~~~~spd------g~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 289 VDETNGTLTKVGYQLTGIHPRNFIITPN------GKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp ECTTTCCEEEEEEEECSSCCCEEEECTT------SCEEEEEETTTTEEEEEEECT
T ss_pred EcCCCCcEEEeeEecCCCCCceEEECCC------CCEEEEEECCCCCEEEEEEEC
Confidence 322222333332211 557889999843 22466666 457777666664
No 288
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=84.35 E-value=0.31 Score=50.68 Aligned_cols=33 Identities=21% Similarity=0.636 Sum_probs=24.5
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
-..|.+|...+.. |. + ++ .|+|.||..|+.+..
T Consensus 180 i~~C~iC~~iv~~-g~--~-----------C~----~C~~~~H~~C~~~~~ 212 (238)
T 3nw0_A 180 VKICNICHSLLIQ-GQ--S-----------CE----TCGIRMHLPCVAKYF 212 (238)
T ss_dssp CCBCTTTCSBCSS-CE--E-----------CS----SSCCEECHHHHHHHT
T ss_pred CCcCcchhhHHhC-Cc--c-----------cC----ccChHHHHHHHHHHH
Confidence 4689999987764 21 2 11 399999999998775
No 289
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=83.82 E-value=8.2 Score=40.92 Aligned_cols=146 Identities=8% Similarity=0.029 Sum_probs=75.2
Q ss_pred eeEEEEe-CCEEEE-----Eec-------------CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEe
Q 001978 24 ITCMSAG-NDVIVL-----GTS-------------KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATI 84 (987)
Q Consensus 24 i~~~~v~-nn~l~~-----~~~-------------~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~ 84 (987)
+.++++. ++.+|+ |+. .+.|+++|.....+..+. . ....+.+-++|.|..+.++.
T Consensus 133 ~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~-----~~~p~gl~~spdg~~lyv~~ 206 (305)
T 3dr2_A 133 PNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D-----LDHPNGLAFSPDEQTLYVSQ 206 (305)
T ss_dssp CCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E-----ESSEEEEEECTTSSEEEEEE
T ss_pred CCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c-----CCCCcceEEcCCCCEEEEEe
Confidence 4456666 446777 442 468999998323333332 2 13457788999999888876
Q ss_pred ecC---CCccEEEEecCCCC---ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeee
Q 001978 85 VGS---GGAETFYTHAKWSK---PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLL 158 (987)
Q Consensus 85 ~~~---~~g~~~Y~~~~~~k---~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v 158 (987)
... +++..+-+...... .+.+.....-....++++ ..|.+.+++.+| |+.+..+. +.+. .
T Consensus 207 ~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d-------~~G~lwv~~~~g-v~~~~~~g-----~~~~-~ 272 (305)
T 3dr2_A 207 TPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD-------RGGWLWSSSGTG-VCVFDSDG-----QLLG-H 272 (305)
T ss_dssp CCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC-------TTSCEEECCSSE-EEEECTTS-----CEEE-E
T ss_pred cCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC-------CCCCEEEecCCc-EEEECCCC-----CEEE-E
Confidence 510 00333333322111 111111111122344554 235688888766 55543322 1222 3
Q ss_pred eeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 159 FELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 159 ~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
+.+++ .+.++.|. + + +-.++++|...||.+.
T Consensus 273 ~~~~~---~~~~~~f~--~---d-~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 273 IPTPG---TASNCTFD--Q---A-QQRLFITGGPCLWMLP 303 (305)
T ss_dssp EECSS---CCCEEEEC--T---T-SCEEEEEETTEEEEEE
T ss_pred EECCC---ceeEEEEe--C---C-CCEEEEEcCCeEEEEE
Confidence 45553 47777775 2 1 2245557778898763
No 290
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=83.77 E-value=28 Score=34.48 Aligned_cols=156 Identities=11% Similarity=0.019 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcCCC--C---hHHHHHHhcCcChHHHHHHHHHHHhhccCCchHHHHHHHHHHHH
Q 001978 392 QVYLVQAEAAFATKDFHRAASFYAKINYIL--S---FEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWAT 466 (987)
Q Consensus 392 ~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~~--~---~E~v~lkFl~~~~~~~L~~YL~~kl~~l~~~~~~q~~lL~~Wl~ 466 (987)
..+...|..++..|+|++|...|.+..... . +-....-+...++.+.-..++.+-+..-+.+... . ..+.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a-~----~~lg 80 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG-Y----MVLS 80 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-H----HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-H----HHHH
Confidence 356678999999999999999999875211 1 2222333344555555555555444432322221 1 1222
Q ss_pred HHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHHH---HHHHHHHcCChhHHHHHHHhH-------hh
Q 001978 467 ELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEAT---TMKLLESYGRVEELVFFASLK-------EQ 536 (987)
Q Consensus 467 elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~t---v~~ll~~~g~~e~~l~~a~~~-------~d 536 (987)
.+|...- ... +. . ......+.+....+++.+....+ +... .-.++...|+.++++...+.. .-
T Consensus 81 ~~~~~~~-~~~-~~-~--~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (217)
T 2pl2_A 81 EAYVALY-RQA-ED-R--ERGKGYLEQALSVLKDAERVNPR--YAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEI 153 (217)
T ss_dssp HHHHHHH-HTC-SS-H--HHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHhh-hhh-hh-h--cccccCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH
Confidence 3333210 000 00 0 00001223334444554443221 1221 223455567777776665542 22
Q ss_pred HHHHHHHHHhcccHHHHHHHHhC
Q 001978 537 HEIVVHHYIQQGEAKKALQMLRK 559 (987)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~l~~ 559 (987)
+..+...|...|++++|+..+.+
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~ 176 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAK 176 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33455667777777777777654
No 291
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=83.74 E-value=47 Score=34.96 Aligned_cols=161 Identities=12% Similarity=0.132 Sum_probs=86.3
Q ss_pred CCceeEEEEe-CCEEEEEecC-----CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC----CCc
Q 001978 21 RGVITCMSAG-NDVIVLGTSK-----GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS----GGA 90 (987)
Q Consensus 21 ~~~i~~~~v~-nn~l~~~~~~-----g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~----~~g 90 (987)
...+.++++. ++.++++... +.|+++|........+--.. .....+..+.+||.|. +++++... .++
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL--STAYCIDDMVFDSKGG-FYFTDFRGYSTNPLG 162 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS--SSCCCEEEEEECTTSC-EEEEECCCBTTBCCE
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC--ccCCcccceEECCCCC-EEEEeccccccCCCc
Confidence 3568899986 4467777655 48999999433333221111 1135789999999996 44544300 125
Q ss_pred cEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEE-cCCCcEEEEEeccCcccccee-ee-eeeeCCCCCc
Q 001978 91 ETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYI-KL-LFELNELPEA 167 (987)
Q Consensus 91 ~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~e~~~-k~-v~~l~~~~~~ 167 (987)
..|.++....+.+.+.. ....+.+++|+++ .+.+.++ +.++.|+.+.+.........+ +. ...++. ...
T Consensus 163 ~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~d------g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~ 234 (333)
T 2dg1_A 163 GVYYVSPDFRTVTPIIQ-NISVANGIALSTD------EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEG 234 (333)
T ss_dssp EEEEECTTSCCEEEEEE-EESSEEEEEECTT------SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSE
T ss_pred eEEEEeCCCCEEEEeec-CCCcccceEECCC------CCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCC
Confidence 56666654444444421 1124788999843 1135455 456888888774321111111 11 122332 134
Q ss_pred eeeEEEEeeccCCCceEEEEEEC--CCeEEEEec
Q 001978 168 FMGLQMETASLSNGTRYYVMAVT--PTRLYSFTG 199 (987)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast--~~rly~f~g 199 (987)
+.+|.+.. + +. +|+++ ..+++.|..
T Consensus 235 ~~~i~~d~-----~-G~-l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 235 PDSCCIDS-----D-DN-LYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EEEEEEBT-----T-CC-EEEEEETTTEEEEECT
T ss_pred CCceEECC-----C-CC-EEEEEcCCCEEEEECC
Confidence 67777752 1 22 33343 567887753
No 292
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=83.55 E-value=48 Score=37.27 Aligned_cols=178 Identities=12% Similarity=0.135 Sum_probs=95.8
Q ss_pred cCcceehhHHHHHhhcCCCceeEEEEeCCEEEEEecCCeEEEE-eCCCCC-ceeeEcCCCCCCccceeEEEeCCCCCeEE
Q 001978 4 MRQVFQVDVLERYAAKGRGVITCMSAGNDVIVLGTSKGWLIRH-DFGAGD-SYDIDLSAGRPGEQSIHKVFVDPGGSHCI 81 (987)
Q Consensus 4 ~~~~f~~~~~~~~~~~~~~~i~~~~v~nn~l~~~~~~g~l~ri-dl~~~~-~~~~~l~~~~~~~~~i~~i~lDp~G~hll 81 (987)
+-|||.-.-+.. +++.-..++-.+.-++++.. ..+|+ ++.++. -.-..+|.. .....|.++-+.|+|.+|.
T Consensus 9 ~~pif~~~~~~~----~s~R~~~~~~n~t~i~~a~~--n~iR~~~i~~~~~Yk~L~~~~~-i~f~~i~qlvlSpsG~lLA 81 (452)
T 3pbp_A 9 ALPIFQASLSAS----QSPRYIFSSQNGTRIVFIQD--NIIRWYNVLTDSLYHSLNFSRH-LVLDDTFHVISSTSGDLLC 81 (452)
T ss_dssp CCTTTCC----------CCEEEEEETTTTEEEEEET--TEEEEEETTTCSSCEEEECTTT-CCCCTTCEEEECTTSSEEE
T ss_pred eeeecccccccC----CCCcEEEEEcCCCEEEEEEC--CEEEEEECCCCCcceEEecCcc-cccCceeEEEECCCCCEEE
Confidence 568896555444 22343445555556666655 46676 775443 333344420 1134689999999999999
Q ss_pred EEeecCCCccEEEEecCCCC---------------ceeccCCC---CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEE
Q 001978 82 ATIVGSGGAETFYTHAKWSK---------------PRVLSKLK---GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (987)
Q Consensus 82 i~~~~~~~g~~~Y~~~~~~k---------------~k~L~klk---g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (987)
+.+. ..+..+...+.. ...+.... .-.|..|-|+|-.. +...+++=|+++.|.++
T Consensus 82 l~g~----~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~---~ds~LVVLtsD~~Ir~y 154 (452)
T 3pbp_A 82 LFND----NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSY---RDSCIVVLKEDDTITMF 154 (452)
T ss_dssp EECS----SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBG---GGCEEEEEETTSCEEEE
T ss_pred EecC----CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccC---CCCeEEEEecCCEEEEE
Confidence 9876 555555433211 11232222 24699999995432 23368888999999999
Q ss_pred EeccC-ccccceee---eeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 144 AVDEK-DKREKYIK---LLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 144 ~i~~~-~~~e~~~k---~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
.+..+ +.+. -++ ..|........|.++.|.. ++=+-|+..++.++-+|.+..
T Consensus 155 Dl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~---~~lTLYvl~~t~~GDIYAlcP 210 (452)
T 3pbp_A 155 DILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK---DGLTLYCLNTTEGGDIFAFYP 210 (452)
T ss_dssp ETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT---TSSCEEEEECTTSCEEEEESS
T ss_pred EcccCCCCCc-chhccccccCCCcccceEEEEEEcC---CCcEEEEEecCCCCCEEEECC
Confidence 99753 1111 111 1122221113366666642 221223333334678998764
No 293
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=82.95 E-value=12 Score=40.21 Aligned_cols=107 Identities=10% Similarity=0.040 Sum_probs=65.8
Q ss_pred eeEEEEeCCEEEEEec--CCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC----------c
Q 001978 24 ITCMSAGNDVIVLGTS--KGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG----------A 90 (987)
Q Consensus 24 i~~~~v~nn~l~~~~~--~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~----------g 90 (987)
...+++.++.+|++.. ++.|.+||+ ....+..+++. .....+.+||.|...+++.. + +
T Consensus 133 p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g------~~p~~i~~~~dG~l~v~~~~---~~~~~~~~~~~~ 203 (328)
T 3dsm_A 133 TEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIG------IQPTSLVMDKYNKMWTITDG---GYEGSPYGYEAP 203 (328)
T ss_dssp CCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECS------SCBCCCEECTTSEEEEEBCC---BCTTCSSCBCCC
T ss_pred cceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC------CCccceEEcCCCCEEEEECC---CccCCccccCCc
Confidence 4677789999999973 789999999 44445556553 23467889999985444433 2 4
Q ss_pred cEEEEecCCCCce-eccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 91 ETFYTHAKWSKPR-VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 91 ~~~Y~~~~~~k~k-~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
..+-++....++. .+.--.|.....++|+++ .+.+.+... .|+......
T Consensus 204 ~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d------~~~lyv~~~--~v~~~d~~t 253 (328)
T 3dsm_A 204 SLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT------RDTLYWINN--DIWRMPVEA 253 (328)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCEEEEECTT------SCEEEEESS--SEEEEETTC
T ss_pred eEEEEECCCCeEEEEEecCCCCCceeEEEecC------CCEEEEEcc--EEEEEECCC
Confidence 5666766554433 221001446788999842 124444433 677655543
No 294
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=82.78 E-value=2.5 Score=48.45 Aligned_cols=197 Identities=9% Similarity=0.023 Sum_probs=103.2
Q ss_pred HHHHchhhHHHHHHhcCC-----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc--CCC---ChHHHHHHhcCcChHHH
Q 001978 369 KVYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN--YIL---SFEEITLKFISVSEQDA 438 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~-----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~--~~~---~~E~v~lkFl~~~~~~~ 438 (987)
..+...|++++|+++.+. |. ..+....|..++..|+|++|.+.|.+.. +.. .+-....-+...++.+.
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Confidence 347778888888888653 32 5677778888888899999988888764 111 12223333445555555
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCC-HHHHHHH
Q 001978 439 LRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLD-EATTMKL 517 (987)
Q Consensus 439 L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld-~~tv~~l 517 (987)
-..++..-+..-+.+... ...+..+|.. .+. +......+++.+.......+ ....-.+
T Consensus 329 A~~~~~~a~~~~~~~~~~-----~~~la~~~~~-~g~---------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYP-----YIQLACLLYK-QGK---------------FTESEAFFNETKLKFPTLPEVPTFFAEI 387 (537)
T ss_dssp HHHHHHHHHHHCTTCSHH-----HHHHHHHHHH-TTC---------------HHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHH-----HHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 555555444432222211 1223333331 111 11122233333332221110 1123456
Q ss_pred HHHcCChhHHHHHHHhHhh--------------HHHHHHHHHhc----------ccHHHHHHHHhCC----CCchhhHHh
Q 001978 518 LESYGRVEELVFFASLKEQ--------------HEIVVHHYIQQ----------GEAKKALQMLRKP----AVPIDLQYK 569 (987)
Q Consensus 518 l~~~g~~e~~l~~a~~~~d--------------y~~ll~~yi~~----------~~~~~AL~~l~~~----~~~~~li~k 569 (987)
+...|+.++++.+.+..-. +......|... |+|++|++.+.+. ++.....+.
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6666777776665554211 12233456666 8888888887642 232355555
Q ss_pred hHHHHHh-HChHHHHHHHHc
Q 001978 570 FAPDLIM-LDAYETVESWMT 588 (987)
Q Consensus 570 ~~~~Ll~-~~p~~ti~~l~~ 588 (987)
.+..+.. .+.++++..+-+
T Consensus 468 l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHH
Confidence 5555553 466777777654
No 295
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=82.69 E-value=11 Score=43.00 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=37.7
Q ss_pred HHHchhhH-HHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEY-AAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~f-e~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.|+..|+| ++|+++.+... ....++...|.-++..|+|++|.+.|.+..
T Consensus 111 ~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 111 ALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677888 88888865321 224577788899999999999999998876
No 296
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=82.31 E-value=46 Score=36.72 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=91.1
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeC-------CCCCceeeEcCC--CCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 23 VITCMSAGNDVIVLGTSKGWLIRHDF-------GAGDSYDIDLSA--GRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~g~l~ridl-------~~~~~~~~~l~~--~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
.|..+++..+..++.+.+|.||-|=. .++.. ....|. ......+|..|..-....|.++.++ +|.+|
T Consensus 160 ~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~-~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~---~G~v~ 235 (389)
T 3kci_A 160 EVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE-DQLKPKLVEALQGHRVVDIACGSGDAQTLCLTD---DDTVW 235 (389)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCC-CEEEEEECGGGTTSCEEEEEECCSSCEEEEEET---TTEEE
T ss_pred eEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCc-ccccceEecccCCCeEEEEEEcCCCcEEEEEcc---CCEEE
Confidence 68999999999999999999999943 11111 111121 1112356777776433478888887 89998
Q ss_pred EEecCC------------CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC-----cccc--ce
Q 001978 94 YTHAKW------------SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK-----DKRE--KY 154 (987)
Q Consensus 94 Y~~~~~------------~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~-----~~~e--~~ 154 (987)
-+..+. ..+..+..+.+..|..|+-... ..++=|++|.||-.--+.. ...+ ..
T Consensus 236 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--------hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~ 307 (389)
T 3kci_A 236 SWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--------FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRR 307 (389)
T ss_dssp EEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--------EEEEEETTSCEEEEECCGGGTTCSSSCCCEEE
T ss_pred EEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC--------EEEEEeCCCeEEEEeCCCCCCCCCCCCccccC
Confidence 876432 1345556666777888887621 2333388999997654321 0111 11
Q ss_pred eeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 155 IKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 155 ~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.+.+-.+.+ ..|..|.. +. ...+.++...++|.|-
T Consensus 308 P~~v~~l~~--~~v~~ia~------G~-~h~~al~~~G~v~~wG 342 (389)
T 3kci_A 308 PRQVQGLQG--KKVIAIAT------GS-LHCVCCTEDGEVYTWG 342 (389)
T ss_dssp EEECGGGTT--CCEEEEEE------CS-SEEEEEETTCCEEEEE
T ss_pred CeEeccCCC--CCEEEEEe------cc-CeEEEECCCCCEEEee
Confidence 122222222 23555443 22 3455557888999884
No 297
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=82.07 E-value=10 Score=36.15 Aligned_cols=146 Identities=10% Similarity=0.076 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhhc--CC---CChHHHHHHhcCcChHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Q 001978 391 DQVYLVQAEAAFATKDFHRAASFYAKIN--YI---LSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWA 465 (987)
Q Consensus 391 ~~V~~~~~~~l~~~g~y~~Aa~~~~~~~--~~---~~~E~v~lkFl~~~~~~~L~~YL~~kl~~l~~~~~~q~~lL~~Wl 465 (987)
..|+...|..++.+|+|++|.+.|.+.. +. ..+-....-+...++.+.-..++...+..-+...... ..+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~ 79 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAY-----YIL 79 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH-----HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHH-----HHH
Confidence 4678889999999999999999999875 11 1223334445556666655556655444333332211 111
Q ss_pred HHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHH---HHHHHHHHcCChhHHHHHHHhH--------
Q 001978 466 TELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEA---TTMKLLESYGRVEELVFFASLK-------- 534 (987)
Q Consensus 466 ~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~---tv~~ll~~~g~~e~~l~~a~~~-------- 534 (987)
..++.. ... +......+.+.+..... +.. ..-.++...|+.++++...+..
T Consensus 80 ~~~~~~-~~~---------------~~~a~~~~~~a~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 80 GSANFM-IDE---------------KQAAIDALQRAIALNTV--YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp HHHHHH-TTC---------------HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHH-cCC---------------HHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence 222221 111 11112222222221111 122 1233556678888887776543
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHhC
Q 001978 535 EQHEIVVHHYIQQGEAKKALQMLRK 559 (987)
Q Consensus 535 ~dy~~ll~~yi~~~~~~~AL~~l~~ 559 (987)
.-|..+...|...|++++|++.+.+
T Consensus 142 ~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 142 RAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2245667888999999999998764
No 298
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=81.97 E-value=61 Score=35.00 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=38.8
Q ss_pred HHchhhHHHHHHhcCC----------chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRD----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~----------~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
+...|+|++|+.+.+. +.....++...|..++..|+|++|...|.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al 170 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY 170 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6778899999887542 22356788999999999999999999988875
No 299
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=81.85 E-value=13 Score=40.60 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=37.6
Q ss_pred HHHchhhHHHHHHhcCC--------c---hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD--------P---LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~--------~---~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.|...|+|++|+.+.+. + .....++...|..++..|+|++|.+.|.+..
T Consensus 150 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 209 (378)
T 3q15_A 150 AYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 47778888888877642 1 1234567789999999999999999998775
No 300
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=81.58 E-value=4.3 Score=49.40 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=39.7
Q ss_pred HHHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+|.++|+|++|+++.+... +-...+...|.-|...|+|++|.+.|.+..
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al 70 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35788999999999876422 234667788999999999999999998875
No 301
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=81.26 E-value=0.33 Score=40.57 Aligned_cols=29 Identities=28% Similarity=0.723 Sum_probs=22.4
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCCh-hHHHhHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHA-FHAQCLI 880 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~-fH~~CL~ 880 (987)
...|.+|...+. ..+..||||. |+..|+.
T Consensus 24 ~~~C~iC~~~~~-------------------~~~~~pCgH~~~C~~C~~ 53 (74)
T 4ic3_A 24 EKLCKICMDRNI-------------------AIVFVPCGHLVTCKQCAE 53 (74)
T ss_dssp HTBCTTTSSSBC-------------------CEEEETTCCBCCCHHHHT
T ss_pred CCCCCCCCCCCC-------------------CEEEcCCCChhHHHHhhh
Confidence 458999986543 3455699999 9999975
No 302
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=80.99 E-value=67 Score=35.59 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=90.0
Q ss_pred CCceeEEEEeCCEEEEEecCCeEEEEeC-C-----CCCceeeEcCC--CCCCccceeEEEeCCCCCeEEEEeecCCCc-c
Q 001978 21 RGVITCMSAGNDVIVLGTSKGWLIRHDF-G-----AGDSYDIDLSA--GRPGEQSIHKVFVDPGGSHCIATIVGSGGA-E 91 (987)
Q Consensus 21 ~~~i~~~~v~nn~l~~~~~~g~l~ridl-~-----~~~~~~~~l~~--~~~~~~~i~~i~lDp~G~hlli~~~~~~~g-~ 91 (987)
+..|..+++..+..++.+.+|.|+-|=- . .........|. ......+|..|.. .+.|.++-++ +| .
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~--G~~ht~al~~---~gg~ 89 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC--GADHTVAYSQ---SGME 89 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEET---TTTE
T ss_pred ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEe--CcceEEEEEC---CCCE
Confidence 4579999999999999999999999932 1 11111112221 1112346766655 5678776655 44 7
Q ss_pred EEEEecCC------------CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCc-----cccce
Q 001978 92 TFYTHAKW------------SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKD-----KREKY 154 (987)
Q Consensus 92 ~~Y~~~~~------------~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~-----~~e~~ 154 (987)
+|-+..+. ..+.++..+.+..|+.|+=... ..++=|++|.||-.--+... ..+..
T Consensus 90 v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~--------h~~alt~~G~v~~wG~n~~GqLG~g~~~~~ 161 (406)
T 4d9s_A 90 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDS--------HCLAVTMEGEVQSWGRNQNGQLGLGDTEDS 161 (406)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS--------EEEEEETTSCEEEEECCTTSTTCSSSCCCE
T ss_pred EEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChh--------heEEEcCCCcEEEeCCCCCccCCCCCCCCc
Confidence 87765322 1355666677888998887621 34555899999976543220 01111
Q ss_pred e--eeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 155 I--KLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 155 ~--k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
. +.+-.+.. ..|..|.. + ....+.++...++|.|-
T Consensus 162 ~~p~~v~~~~~--~~i~~va~------G-~~hs~alt~~G~v~~wG 198 (406)
T 4d9s_A 162 LVPQKIQAFEG--IRIKMVAA------G-AEHTAAVTEDGDLYGWG 198 (406)
T ss_dssp EEEEECGGGTT--CCEEEEEE------C-SSEEEEEETTSCEEEEE
T ss_pred ccceEecccCC--CcEEEEec------C-CCeEEEEeCCCCEEEee
Confidence 1 11111221 23444443 1 24566668899999994
No 303
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=80.98 E-value=56 Score=33.93 Aligned_cols=156 Identities=11% Similarity=0.148 Sum_probs=88.2
Q ss_pred eEEEE-eCCEEEEEe-cCCeEEEEeC-CCCC---ceeeEcCCC-CCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 25 TCMSA-GNDVIVLGT-SKGWLIRHDF-GAGD---SYDIDLSAG-RPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 25 ~~~~v-~nn~l~~~~-~~g~l~ridl-~~~~---~~~~~l~~~-~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
-.+++ .++.++++- .++.|+++++ .... +..+.++.. .....-...|..||.|..++++..+. ....|-++.
T Consensus 73 EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g 151 (255)
T 3qqz_A 73 ETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNG 151 (255)
T ss_dssp EEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEES
T ss_pred HHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcc
Confidence 34443 566776765 5578888888 3232 344555431 11223478999999999999987721 113333331
Q ss_pred --CCCCceec------cCCCCceEEEEeecCCCCCCCCcceEEEEcC-CCcEEEEEeccCccccceeeeeeeeCCCC---
Q 001978 98 --KWSKPRVL------SKLKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAVDEKDKREKYIKLLFELNELP--- 165 (987)
Q Consensus 98 --~~~k~k~L------~klkg~~i~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i~~~~~~e~~~k~v~~l~~~~--- 165 (987)
.....+.+ ..+.-..+.+++.++ .|+.+++=+. ...|+++...+. ++..+.|....
T Consensus 152 ~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp------~tg~lliLS~~s~~L~~~d~~g~------~~~~~~L~~g~~~l 219 (255)
T 3qqz_A 152 LLSSNELHISKDKALQRQFTLDDVSGAEFNQ------QKNTLLVLSHESRALQEVTLVGE------VIGEMSLTKGSRGL 219 (255)
T ss_dssp TTCSSCCEEEECHHHHHTCCSSCCCEEEEET------TTTEEEEEETTTTEEEEECTTCC------EEEEEECSTTGGGC
T ss_pred cccCCceeeecchhhccccccCCceeEEEcC------CCCeEEEEECCCCeEEEEcCCCC------EEEEEEcCCccCCc
Confidence 11112221 111223678999983 2456666554 466777755432 45555666310
Q ss_pred ----CceeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 166 ----EAFMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 166 ----~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
..-.||.+.. + +-+.+++-|..+|.|.-
T Consensus 220 ~~~~~qpEGia~d~-----~-G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 220 SHNIKQAEGVAMDA-----S-GNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp SSCCCSEEEEEECT-----T-CCEEEEETTTEEEEEEC
T ss_pred ccccCCCCeeEECC-----C-CCEEEEcCCceEEEEEe
Confidence 1347888863 2 23556688999998853
No 304
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=80.95 E-value=32 Score=35.81 Aligned_cols=150 Identities=12% Similarity=0.168 Sum_probs=89.5
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC-----CCcee
Q 001978 31 NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW-----SKPRV 104 (987)
Q Consensus 31 nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~-----~k~k~ 104 (987)
+.+.++.+++|.|-|..+ ... ...+.+. .++.+..++.-.+..++++.|+ .|..|.+.... .+-++
T Consensus 2 E~v~v~lT~~G~iKr~~~~~~~-~~~~~lk----e~D~l~~~~~~~t~~~ll~~T~---~Gr~~~~~~~elp~~r~~G~~ 73 (256)
T 1zvt_A 2 EPVTIVLSQMGWVRSAKGHDID-APGLNYK----AGDSFKAAVKGKSNQPVVFVDS---TGRSYAIDPITLPSARGQGEP 73 (256)
T ss_dssp CEEEEEEETTSEEEEEESSCCC-STTSCCC----TTCCEEEEEEEETTSCEEEEET---TSEEEEECGGGSCCSSSCCEE
T ss_pred CCEEEEEeCCCEEEEeeCCcCC-ceeccCC----CCCEEEEEEEeCCCCEEEEEeC---CCeEEEEEHHHCCCcCCCCeE
Confidence 356788999999999988 322 1112221 2467777777666777888888 89999886422 12332
Q ss_pred cc---CC-CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCC
Q 001978 105 LS---KL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSN 180 (987)
Q Consensus 105 L~---kl-kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~ 180 (987)
+. +| .|-.|.++.-.+ ....+|+.|++|.+.-+.+..-...-+.=+.+..+.+. ..+.++.... .
T Consensus 74 i~~~i~L~~~e~Iv~~~~~~------~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~-d~lv~~~~~~----~ 142 (256)
T 1zvt_A 74 LTGKLTLPPGATVDHMLMES------DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIE----D 142 (256)
T ss_dssp GGGTCCCCTTCCEEEEECCC------TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT-CCBCCCEECC----C
T ss_pred eeeeecCCCCCEEEEEEEeC------CCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCC-CEEEEEEEec----C
Confidence 22 22 244566663321 12369999999999988874321111222345566543 3465554420 1
Q ss_pred CceEEEEEECCCeEEEEec
Q 001978 181 GTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 181 ~~~~~i~ast~~rly~f~g 199 (987)
+...++++|...++..|.-
T Consensus 143 ~~~~i~l~T~~G~~lrf~~ 161 (256)
T 1zvt_A 143 ASDMLLAITQAGRMLMFPV 161 (256)
T ss_dssp TTCEEEEEETTSEEEEEEG
T ss_pred CCCEEEEEcCCCeEEEEEH
Confidence 2246788899999998853
No 305
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=80.94 E-value=70 Score=40.99 Aligned_cols=114 Identities=10% Similarity=0.097 Sum_probs=69.1
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeCCCCCc---eeeEcCCCCCCccceeEEEeCCC------CCeEEEEeecCCCccE
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDFGAGDS---YDIDLSAGRPGEQSIHKVFVDPG------GSHCIATIVGSGGAET 92 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl~~~~~---~~~~l~~~~~~~~~i~~i~lDp~------G~hlli~~~~~~~g~~ 92 (987)
..|++.++.++++++++ +|.|+.+.++..+. .+.+++ ..|..+.+.|. +..++|.+.. ++..
T Consensus 514 ~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~------~evscl~i~~~~~~~~~s~~~aVg~~~--d~tv 584 (1158)
T 3ei3_A 514 KNISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHTEME------HEVACLDITPLGDSNGLSPLCAIGLWT--DISA 584 (1158)
T ss_dssp CCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEEECS------SCEEEEECCCCSSSTTCCSEEEEEETT--TTEE
T ss_pred CEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeecccCCC------CceEEEEeecCCCCcccccEEEEEECC--CCEE
Confidence 36999999999999995 78888877732232 233333 46788888754 4678887631 4555
Q ss_pred EEEecCCCCceeccCCCC-ceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 93 FYTHAKWSKPRVLSKLKG-LVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 93 ~Y~~~~~~k~k~L~klkg-~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
.-+....-.......+.+ ...+||..... .+.--+++|..+|.++.+.++..
T Consensus 585 ~I~sL~~l~~~~~~~L~~~~~p~si~l~~~----~~~~~L~igl~dG~l~~~~~d~~ 637 (1158)
T 3ei3_A 585 RILKLPSFELLHKEMLGGEIIPRSILMTTF----ESSHYLLCALGDGALFYFGLNIE 637 (1158)
T ss_dssp EEEETTTCCEEEEEECCSSCCEEEEEEEEE----TTEEEEEEEETTSEEEEEEECTT
T ss_pred EEEECCCCCeEEEEECCCCCCCcEEEEEEe----CCCcEEEEEeCCCeEEEEEEcCC
Confidence 444443222222112211 34556655521 12235788999999999988754
No 306
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=80.48 E-value=63 Score=34.45 Aligned_cols=155 Identities=12% Similarity=0.187 Sum_probs=88.3
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCce----ee-EcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC-----
Q 001978 31 NDVIVLGTSKGWLIRHDF-GAGDSY----DI-DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW----- 99 (987)
Q Consensus 31 nn~l~~~~~~g~l~ridl-~~~~~~----~~-~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~----- 99 (987)
+.++++.+++|.|-|..+ .-.... .+ -+.. . .++.+..++.-.+..++++-|+ .|..|.+....
T Consensus 3 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~-k-e~D~l~~~~~~~~~~~ll~fT~---~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARI-K-EEDFIDRLLVANTHDHILCFSS---RGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CEEEEEEETTSEEEEEECC----------------------CCEEEEEEEETTCEEEEEET---TSEEEEEEGGGSCCCC
T ss_pred CcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeee-C-CCCEEEEEEEECCCCEEEEEEC---CCEEEEEEhhHCcCCC
Confidence 457899999999999988 211110 01 0111 1 2467777887777888888888 89999887411
Q ss_pred --CCceecc---CC-CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEE
Q 001978 100 --SKPRVLS---KL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (987)
Q Consensus 100 --~k~k~L~---kl-kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~ 173 (987)
.+-.++. ++ .|-.|.++.--+.. . ....+++.|++|.+.-+.+..-...-+.=...+++.+. ..+.++..
T Consensus 78 ~~a~G~~i~~~l~l~~~e~i~~~~~~~~~-~--~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~ 153 (307)
T 1zi0_A 78 RGARGRPIVNLLPLEQDERITAILPVTEF-E--EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDL 153 (307)
T ss_dssp SSSCCEEGGGTSCCCTTCCEEEEEEESCC-C--TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEE
T ss_pred CCCCCeEhhhccCCCCCCEEEEEEEeccC-C--CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEE
Confidence 1223222 12 34456555442111 1 12359999999999888774221101111233456543 45666655
Q ss_pred EeeccCCCceEEEEEECCCeEEEEec
Q 001978 174 ETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 174 ~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
.. + ...++++|...+++.|.-
T Consensus 154 ~~----~-~~~i~l~T~~G~~irf~~ 174 (307)
T 1zi0_A 154 TS----G-EDEVMLFSAEGKVVRFKE 174 (307)
T ss_dssp EC----T-TCEEEEEETTSEEEEEEG
T ss_pred eC----C-CCEEEEECCCCcEEEEEH
Confidence 42 2 346777899999998854
No 307
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=80.40 E-value=15 Score=36.46 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=37.9
Q ss_pred HHHchhhHHHHHHhcCC-----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|++..+. |..-..+....|..++..|+|++|.+.|.+..
T Consensus 16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 69 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI 69 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH
Confidence 47888999999988652 21223456668999999999999999998875
No 308
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=80.33 E-value=2 Score=38.92 Aligned_cols=48 Identities=15% Similarity=0.392 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhh
Q 001978 792 LDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDCGVCRRKILV 845 (987)
Q Consensus 792 L~~y~~~i~~l~~~m~~~~~~~~~l~~~i~~~~~r~~~i~~~~~C~~C~k~L~~ 845 (987)
++++..++..++............+...+..+.. ++..|++||.++..
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~------~g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIEELKK------AKGKCPVCGRELTD 59 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------CSEECTTTCCEECH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCCCCCCCcCCH
Confidence 3445555555554444443444444444444422 26789999977654
No 309
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=80.04 E-value=46 Score=36.97 Aligned_cols=109 Identities=8% Similarity=-0.017 Sum_probs=66.9
Q ss_pred ceeEEEEe-CCEEEEEe-cCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCc--cEEEEecC
Q 001978 23 VITCMSAG-NDVIVLGT-SKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGA--ETFYTHAK 98 (987)
Q Consensus 23 ~i~~~~v~-nn~l~~~~-~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g--~~~Y~~~~ 98 (987)
....+++. ++.||++- .++.|.+||+....+..+.-. ..... +-+||.|.+++++.. ++ ..|.+...
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-----~~~~~-ia~~~~g~~l~~~d~---~~~~~I~~~d~~ 202 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-----FKGGK-PAVTKDKQRVYSIGW---EGTHTVYVYMKA 202 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-----CCBCB-CEECTTSSEEEEEBS---STTCEEEEEEGG
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-----CCCCc-eeEecCCCcEEEEec---CCCceEEEEEcC
Confidence 45788885 45566665 458999999944444444222 12334 889999998888765 34 55656543
Q ss_pred CCC-ceec----cCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 99 WSK-PRVL----SKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 99 ~~k-~k~L----~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
... .+.+ . ..+....++++++. .+.+.+...+|.|+.+..+.
T Consensus 203 ~~~~~~~~g~~~~-~~~~~p~~iav~p~------~g~lyv~d~~~~I~~~d~~~ 249 (409)
T 3hrp_A 203 SGWAPTRIGQLGS-TFSGKIGAVALDET------EEWLYFVDSNKNFGRFNVKT 249 (409)
T ss_dssp GTTCEEEEEECCT-TSCSCCCBCEECTT------SSEEEEECTTCEEEEEETTT
T ss_pred CCceeEEeeeccc-hhcCCcEEEEEeCC------CCeEEEEECCCcEEEEECCC
Confidence 322 2333 2 02345677888732 35788877778888776654
No 310
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=79.75 E-value=19 Score=43.16 Aligned_cols=78 Identities=10% Similarity=0.144 Sum_probs=51.6
Q ss_pred eeEEEEeCC--EEEEEecC---------CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 24 ITCMSAGND--VIVLGTSK---------GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 24 i~~~~v~nn--~l~~~~~~---------g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
+.+++++.+ .|+++... +.|+++|+...+...+ .........+..+-..|.|+.++..++ +..
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l--~~~~~~~~~~~~~~~SPdG~~la~~~~----~~i 136 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL--DPPEVSNAKLQYAGWGPKGQQLIFIFE----NNI 136 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC--CCTTCCSCCCSBCCBCSSTTCEEEEET----TEE
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEec--cCCccccccccccEECCCCCEEEEEEC----CeE
Confidence 788888855 67777653 7899999933333222 221111234778889999999888775 778
Q ss_pred EEEecCCCCceeccC
Q 001978 93 FYTHAKWSKPRVLSK 107 (987)
Q Consensus 93 ~Y~~~~~~k~k~L~k 107 (987)
|.+.....+.+.+..
T Consensus 137 ~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 137 YYCAHVGKQAIRVVS 151 (723)
T ss_dssp EEESSSSSCCEEEEC
T ss_pred EEEECCCCceEEEec
Confidence 777776666666553
No 311
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=79.04 E-value=34 Score=36.83 Aligned_cols=81 Identities=14% Similarity=0.187 Sum_probs=50.7
Q ss_pred CCEEEEEec-CC--eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccC
Q 001978 31 NDVIVLGTS-KG--WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSK 107 (987)
Q Consensus 31 nn~l~~~~~-~g--~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~k 107 (987)
++.|+++.. +| .|+++|+...+.. .+... ....+......|.|.+++.... ++..|-++....+.+.+..
T Consensus 47 g~~l~~~~~~~g~~~l~~~d~~~g~~~--~lt~~--~~~~~~~~~~spdg~~l~~~~~---~~~l~~~d~~~g~~~~~~~ 119 (388)
T 3pe7_A 47 GSKLLFGGAFDGPWNYYLLDLNTQVAT--QLTEG--RGDNTFGGFLSPDDDALFYVKD---GRNLMRVDLATLEENVVYQ 119 (388)
T ss_dssp SCEEEEEECTTSSCEEEEEETTTCEEE--ECCCS--SCBCSSSCEECTTSSEEEEEET---TTEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEEcCCCCceEEEEeCCCCceE--EeeeC--CCCCccceEEcCCCCEEEEEeC---CCeEEEEECCCCcceeeee
Confidence 456666665 56 5999999322222 22211 1223334678999999998887 6677777776666666655
Q ss_pred CCCceEEEEee
Q 001978 108 LKGLVVNAVAW 118 (987)
Q Consensus 108 lkg~~i~sVaw 118 (987)
..+..+...+|
T Consensus 120 ~~~~~~~~~~~ 130 (388)
T 3pe7_A 120 VPAEWVGYGTW 130 (388)
T ss_dssp CCTTEEEEEEE
T ss_pred chhhcccccce
Confidence 55556666666
No 312
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=78.78 E-value=18 Score=43.41 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=64.3
Q ss_pred ceeEEEEeCC--EEEEEecCCeEEEEeC-CCC--CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec
Q 001978 23 VITCMSAGND--VIVLGTSKGWLIRHDF-GAG--DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA 97 (987)
Q Consensus 23 ~i~~~~v~nn--~l~~~~~~g~l~ridl-~~~--~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~ 97 (987)
.+.+++.+.+ .|+++.. |.|+++|+ ... .+..+.- ....+..+-..|.|++++.+++ +..|.+..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~-----~~~~~~~~~~SPDG~~la~~~~----~~i~~~d~ 179 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH-----GEGFATDAKLSPKGGFVSFIRG----RNLWVIDL 179 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC-----SSSCEEEEEECTTSSEEEEEET----TEEEEEET
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEccc-----CCcccccccCCCCCCEEEEEeC----CcEEEEec
Confidence 3677788755 6666665 89999999 431 3332211 1356889999999999887765 67777777
Q ss_pred CCCCceeccCCCCce----------------EEEEeecCCCCCCCCcceEEEEcCC
Q 001978 98 KWSKPRVLSKLKGLV----------------VNAVAWNRQQITEASTKEIILGTDT 137 (987)
Q Consensus 98 ~~~k~k~L~klkg~~----------------i~sVaw~~~~~~~~st~~iLiGt~~ 137 (987)
...+.+.+....+.. +.+++|+++ .+.|+.++.+
T Consensus 180 ~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD------g~~l~~~~~d 229 (741)
T 2ecf_A 180 ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPD------DSAIAYARID 229 (741)
T ss_dssp TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTT------SSCEEEEEEE
T ss_pred CCCCEEEeccCCccceeccccceeeeeccccccceEECCC------CCEEEEEEEc
Confidence 665666655322221 478999943 2256666544
No 313
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=78.40 E-value=25 Score=36.81 Aligned_cols=98 Identities=7% Similarity=0.022 Sum_probs=61.0
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCC
Q 001978 31 NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLK 109 (987)
Q Consensus 31 nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klk 109 (987)
+++++.+-.++.|+.+|. .+..+-++..+. ...++.++++|.|.. +++. ++..+-++..-.....+.--.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~----~~~~~~~~~~pdG~i-lvs~----~~~V~~~d~~G~~~W~~~~~~ 75 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEK----GWECNSVAATKAGEI-LFSY----SKGAKMITRDGRELWNIAAPA 75 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCT----TCCCCEEEECTTSCE-EEEC----BSEEEEECTTSCEEEEEECCT
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCc----cCCCcCeEECCCCCE-EEeC----CCCEEEECCCCCEEEEEcCCC
Confidence 457788888999999999 777777776642 135789999999974 4443 355555554222122222112
Q ss_pred CceEEEEeecCCCCCCCCcceEEEE-cC-CCcEEEEE
Q 001978 110 GLVVNAVAWNRQQITEASTKEIILG-TD-TGQLHEMA 144 (987)
Q Consensus 110 g~~i~sVaw~~~~~~~~st~~iLiG-t~-~G~i~e~~ 144 (987)
+..+.++++.+ .|.++++ +. ++.|++..
T Consensus 76 ~~~~~~~~~~~-------dG~~lv~~~~~~~~v~~vd 105 (276)
T 3no2_A 76 GCEMQTARILP-------DGNALVAWCGHPSTILEVN 105 (276)
T ss_dssp TCEEEEEEECT-------TSCEEEEEESTTEEEEEEC
T ss_pred CccccccEECC-------CCCEEEEecCCCCEEEEEe
Confidence 35788888873 2356665 44 67777654
No 314
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=78.16 E-value=71 Score=33.49 Aligned_cols=155 Identities=10% Similarity=0.070 Sum_probs=90.9
Q ss_pred CceeEEEEe---CCEEEEEecCCeEEEEeC-CCC-C---ceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 22 GVITCMSAG---NDVIVLGTSKGWLIRHDF-GAG-D---SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 22 ~~i~~~~v~---nn~l~~~~~~g~l~ridl-~~~-~---~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
+.|.++... +..+++++++|.+.|..+ .-. + +.-+.+. .++.+..+++-.+..++++.|+ +|..|
T Consensus 68 e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk----egD~l~~~~~~~~~~~ill~T~---~G~~~ 140 (276)
T 3no0_A 68 EKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT----EGDEVVSIASSVDETHILLFTK---KGRVA 140 (276)
T ss_dssp CCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC----TTCCEEEEEECCSSCEEEEEET---TSEEE
T ss_pred CEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC----CCCEEEEEEEeCCCCEEEEEEC---CCEEE
Confidence 456666543 368999999999999987 211 1 1112221 2357777777666678888888 79888
Q ss_pred EEecCCC-------CceeccCCC-CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC---ccccceeeeeeeeC
Q 001978 94 YTHAKWS-------KPRVLSKLK-GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK---DKREKYIKLLFELN 162 (987)
Q Consensus 94 Y~~~~~~-------k~k~L~klk-g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~---~~~e~~~k~v~~l~ 162 (987)
.+....- +-..+-+|+ |-.|.++.-.++ ...+++.|++|.+..+.+..- .+.-+-++.+ .
T Consensus 141 r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~------~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i---~ 211 (276)
T 3no0_A 141 RFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNG------EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS---G 211 (276)
T ss_dssp EEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESS------CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC---C
T ss_pred EEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCC------CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE---c
Confidence 7764211 111222232 333444332211 237999999999998887532 1112223332 2
Q ss_pred CCCCceeeEEEEeeccCCCceEEEEEECCCeEEE--Ee
Q 001978 163 ELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYS--FT 198 (987)
Q Consensus 163 ~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~--f~ 198 (987)
..+++.++... ++...++++|...++.. |.
T Consensus 212 -~~~~lv~~~~~-----~~~~~i~~~t~~G~~ir~~~~ 243 (276)
T 3no0_A 212 -TKDTLVDLIPI-----KEEVELLITTKNGKAFYDKIN 243 (276)
T ss_dssp -SSSCEEEEEEE-----SSEEEEEEEETTSCEEEEEEE
T ss_pred -CCCcEEEEEEe-----CCCCEEEEEcCCCeEEEeeeC
Confidence 23557766553 22356777788888987 74
No 315
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=77.73 E-value=13 Score=40.50 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=38.1
Q ss_pred HHchhhHHHHHHhcCC----------chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRD----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~----------~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
++..|+|++|+.+.+. +.....++...|..++..|+|..|...|.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5677888888887542 22356788899999999999999999988765
No 316
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=77.57 E-value=21 Score=35.75 Aligned_cols=32 Identities=9% Similarity=-0.010 Sum_probs=26.5
Q ss_pred chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 387 PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 387 ~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
|.....++...|..++..|+|++|.+.|.+..
T Consensus 33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 64 (252)
T 2ho1_A 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL 64 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 44456778888999999999999999998765
No 317
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=77.57 E-value=47 Score=35.10 Aligned_cols=96 Identities=7% Similarity=0.175 Sum_probs=59.4
Q ss_pred ceeEEEEeCCEEEEEec---------CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC--CCcc
Q 001978 23 VITCMSAGNDVIVLGTS---------KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS--GGAE 91 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~---------~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~--~~g~ 91 (987)
.+...++.++.+++... .+.|+++|+...+...+ ..+..+...|.|.+++...... +...
T Consensus 16 ~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---------~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---------ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---------ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---------ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 46666776667766532 46799999933333322 2467788899999988877621 1123
Q ss_pred EEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEc
Q 001978 92 TFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT 135 (987)
Q Consensus 92 ~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt 135 (987)
.|-+.....+.+.+....+ +.+++|.++ ...|+++.
T Consensus 87 l~~~~~~~g~~~~l~~~~~--~~~~~wspd------g~~l~~~~ 122 (347)
T 2gop_A 87 IWVADLETLSSKKILEAKN--IRSLEWNED------SRKLLIVG 122 (347)
T ss_dssp EEEEETTTTEEEEEEEESE--EEEEEECTT------SSEEEEEE
T ss_pred EEEEECCCCceEEEEcCCC--ccceeECCC------CCEEEEEE
Confidence 4555555556666654443 999999843 22566664
No 318
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=77.43 E-value=3.1 Score=39.14 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhh
Q 001978 394 YLVQAEAAFATKDFHRAASFYAKI 417 (987)
Q Consensus 394 ~~~~~~~l~~~g~y~~Aa~~~~~~ 417 (987)
+...|.-++..|+|++|.+.|.+.
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~a 57 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTY 57 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444445555555555544443
No 319
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=77.39 E-value=77 Score=33.45 Aligned_cols=117 Identities=11% Similarity=0.120 Sum_probs=66.6
Q ss_pred CceeEEEEeC--CEEEEEe-cCCeEEEEeCC-CCCceeeE-cCCC------CCCccceeEEEeCCCCCeEEEEeecCCCc
Q 001978 22 GVITCMSAGN--DVIVLGT-SKGWLIRHDFG-AGDSYDID-LSAG------RPGEQSIHKVFVDPGGSHCIATIVGSGGA 90 (987)
Q Consensus 22 ~~i~~~~v~n--n~l~~~~-~~g~l~ridl~-~~~~~~~~-l~~~------~~~~~~i~~i~lDp~G~hlli~~~~~~~g 90 (987)
...++++++. +.|+++- .+|.+..+|+. ......+. ++.. +.....++.+-++|.|. ++++.. +++
T Consensus 86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~--~~~ 162 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDL--GSD 162 (347)
T ss_dssp CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEET--TTT
T ss_pred CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeC--CCC
Confidence 3467788875 4677776 67899999983 22332221 1111 01123588899999999 666543 245
Q ss_pred cEEEEecC-CCCceec---cCCCCceEEEEeecCCCCCCCCcceEEE-EcCCCcEEEEEecc
Q 001978 91 ETFYTHAK-WSKPRVL---SKLKGLVVNAVAWNRQQITEASTKEIIL-GTDTGQLHEMAVDE 147 (987)
Q Consensus 91 ~~~Y~~~~-~~k~k~L---~klkg~~i~sVaw~~~~~~~~st~~iLi-Gt~~G~i~e~~i~~ 147 (987)
..+.+... ..+...+ .-..|.....++|+++ .+.+++ +..+|.|....++.
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spd------g~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPD------GQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTT------SSEEEEEETTTTEEEEEEEET
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCC------CCEEEEEeCCCCEEEEEEecC
Confidence 55544443 2222221 1113556788999843 123444 45567777777764
No 320
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=76.92 E-value=4.2 Score=37.08 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=39.9
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..|+++|+|++|++..+.. ..-..++...|.-++..|+|++|...|.+..
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence 3589999999999986532 1234677788999999999999999998875
No 321
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=76.65 E-value=13 Score=40.54 Aligned_cols=105 Identities=6% Similarity=0.037 Sum_probs=61.6
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCC
Q 001978 23 VITCMSAGNDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSK 101 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k 101 (987)
...++++.++.+++++.+|.|+.+|. .....-+.+.... ..+....+ .|.++++.+. +|..+.++...-+
T Consensus 269 ~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~----~~~~~~~~--~~~~l~v~~~---~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 269 SVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH----RLLTSPVL--YNGNLVVGDS---EGYLHWINVEDGR 339 (376)
T ss_dssp CEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTT----SCCCCCEE--ETTEEEEECT---TSEEEEEETTTCC
T ss_pred CCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCC----CcccCCEE--ECCEEEEEeC---CCeEEEEECCCCc
Confidence 35778999999999999999999999 5554433331111 11111112 2567888877 7888777765443
Q ss_pred ceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEE
Q 001978 102 PRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (987)
Q Consensus 102 ~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (987)
..--.++.+..+. ..+ ....+.+++||.+|.||.+
T Consensus 340 ~~~~~~~~~~~~~----~~~---~~~~~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 340 FVAQQKVDSSGFQ----TEP---VAADGKLLIQAKDGTVYSI 374 (376)
T ss_dssp EEEEEECCTTCBC----SCC---EEETTEEEEEBTTSCEEEE
T ss_pred EEEEEecCCCcce----eCC---EEECCEEEEEeCCCEEEEE
Confidence 3221111111111 000 0123589999999998865
No 322
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=75.57 E-value=1e+02 Score=34.03 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=91.1
Q ss_pred ceeEEEEeCCEEEEEecCC-eEEEEeC-------CCCCce-eeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 23 VITCMSAGNDVIVLGTSKG-WLIRHDF-------GAGDSY-DIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~g-~l~ridl-------~~~~~~-~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
.|..++...+..++.+.+| .||-+=. .++... ..+.|.......+|.+|.. ...|.++-++ +|.+|
T Consensus 69 ~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~--G~~h~~alt~---~G~v~ 143 (406)
T 4d9s_A 69 QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC--GDSHCLAVTM---EGEVQ 143 (406)
T ss_dssp CEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEET---TSCEE
T ss_pred CEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE--ChhheEEEcC---CCcEE
Confidence 6899999999988777765 9999932 111111 1222222222347888776 5788888888 89999
Q ss_pred EEecCCC------------CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC------ccccce-
Q 001978 94 YTHAKWS------------KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK------DKREKY- 154 (987)
Q Consensus 94 Y~~~~~~------------k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~------~~~e~~- 154 (987)
-+..+.. .++.+..+.+..|+.|+=... ..++=|++|.||-.-.... +..++.
T Consensus 144 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~--------hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~ 215 (406)
T 4d9s_A 144 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAE--------HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV 215 (406)
T ss_dssp EEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS--------EEEEEETTSCEEEEECCTTSTTCSSSSCCEEE
T ss_pred EeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCC--------eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCc
Confidence 8865321 345566667778888876521 3444488999997654322 111111
Q ss_pred eeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 155 IKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 155 ~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.+.+..+.. .+|..|.- .....++++...++|.|-
T Consensus 216 p~~v~~~~~--~~i~~va~-------G~~ht~~l~~~G~v~~wG 250 (406)
T 4d9s_A 216 PERVTSTGG--EKMSMVAC-------GWRHTISVSYSGALYTYG 250 (406)
T ss_dssp EEECCCSTT--CCEEEEEE-------CSSEEEEEETTCCEEEEE
T ss_pred cEEecccCC--ceEEEEEE-------CCCcEEEEcCCCCEEEee
Confidence 112211211 23554443 124566668899999984
No 323
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.59 E-value=0.94 Score=39.68 Aligned_cols=35 Identities=14% Similarity=0.462 Sum_probs=26.4
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
..-.|++|...+.. |++.=.|||.|-..|+.....
T Consensus 6 ~~~~CPI~~~~~~d------------------PV~~~~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 6 SGFTCPITKEEMKK------------------PVKNKVCGHTYEEDAIVRMIE 40 (94)
T ss_dssp SCCBCTTTCSBCSS------------------EEEESSSCCEEEHHHHHHHHH
T ss_pred cEeECcCcCchhcC------------------CEEcCCCCCeecHHHHHHHHH
Confidence 34679999877655 544324999999999998863
No 324
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=74.32 E-value=33 Score=43.42 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=74.8
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeec---CCCccEEEEecC
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVG---SGGAETFYTHAK 98 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~---~~~g~~~Y~~~~ 98 (987)
+.+.+.+.+.+.++++.. +.|+++|+...+...+.-+ ...+..+-+.|.|.+++.++.. .+++..|-+...
T Consensus 15 ~~~~~~~~S~~~iaf~~~-~~l~~~~~~gg~~~~lt~~-----~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~ 88 (1045)
T 1k32_A 15 NLLLNPDIHGDRIIFVCC-DDLWEHDLKSGSTRKIVSN-----LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE 88 (1045)
T ss_dssp CCCEEEEEETTEEEEEET-TEEEEEETTTCCEEEEECS-----SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred ceEeCcEEeCCEEEEEEC-CcEEEEECCCCcEEEeeeC-----CCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECC
Confidence 357888999998888776 7999999944444444322 3578999999999999888752 123456666666
Q ss_pred CCCceeccCCCCceE-------EEEeecCCCCCCCCcceEEEEcCC-------CcEEEEEecc
Q 001978 99 WSKPRVLSKLKGLVV-------NAVAWNRQQITEASTKEIILGTDT-------GQLHEMAVDE 147 (987)
Q Consensus 99 ~~k~k~L~klkg~~i-------~sVaw~~~~~~~~st~~iLiGt~~-------G~i~e~~i~~ 147 (987)
..+.+.|.. .+..+ .+++|.++ |.++..+.. ..||...+..
T Consensus 89 ~g~~~~lt~-~~~~~~~~~~~~~~~~~SpD-------g~ll~~~~~~~~~~~~~~l~~~~~~~ 143 (1045)
T 1k32_A 89 NGEIKRITY-FSGKSTGRRMFTDVAGFDPD-------GNLIISTDAMQPFSSMTCLYRVENDG 143 (1045)
T ss_dssp TTEEEECCC-CCEEEETTEECSEEEEECTT-------CCEEEEECTTSSSTTCCEEEEEEGGG
T ss_pred CCCeEEccc-CCCcccccccccccccCCCC-------CEEEEEECCcCCCcccceEEEEECCC
Confidence 656677764 33456 89999843 135554432 3477766544
No 325
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=74.22 E-value=73 Score=33.83 Aligned_cols=152 Identities=8% Similarity=-0.005 Sum_probs=78.8
Q ss_pred ceeEEEE-eCCEEEEEe-cCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 23 VITCMSA-GNDVIVLGT-SKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 23 ~i~~~~v-~nn~l~~~~-~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
....+++ .++.+|++. .+|.|.+||+ .......++++...........+.+ .|.+++++.. +.++..+-+....
T Consensus 85 ~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~-~~~~~v~viD~~t 161 (328)
T 3dsm_A 85 SPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCW-SYQNRILKIDTET 161 (328)
T ss_dssp SEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEEC-TTCCEEEEEETTT
T ss_pred CCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcC-CCCCEEEEEECCC
Confidence 4588888 778899888 7899999999 4333445665531111113455666 3667777752 0035555565544
Q ss_pred CCce-eccCCCCceEEEEeecCCCCCCCCcceEEEEcCC-----------CcEEEEEeccCccccceeeeeeeeCCCCCc
Q 001978 100 SKPR-VLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT-----------GQLHEMAVDEKDKREKYIKLLFELNELPEA 167 (987)
Q Consensus 100 ~k~k-~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~-----------G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~ 167 (987)
.+.. .+. . |.....+++++ .|.+++++.. +.|+....... + +...+.++.. ..
T Consensus 162 ~~~~~~i~-~-g~~p~~i~~~~-------dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~----~-v~~~~~~~~g-~~ 226 (328)
T 3dsm_A 162 DKVVDELT-I-GIQPTSLVMDK-------YNKMWTITDGGYEGSPYGYEAPSLYRIDAETF----T-VEKQFKFKLG-DW 226 (328)
T ss_dssp TEEEEEEE-C-SSCBCCCEECT-------TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT----E-EEEEEECCTT-CC
T ss_pred CeEEEEEE-c-CCCccceEEcC-------CCCEEEEECCCccCCccccCCceEEEEECCCC----e-EEEEEecCCC-CC
Confidence 3321 121 1 22233444441 2467777653 45665543322 1 2222345421 23
Q ss_pred eeeEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 168 FMGLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 168 I~gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
..++.+.. +.+.+.+ +.. .+|.|.-
T Consensus 227 p~~la~~~-----d~~~lyv-~~~-~v~~~d~ 251 (328)
T 3dsm_A 227 PSEVQLNG-----TRDTLYW-INN-DIWRMPV 251 (328)
T ss_dssp CEEEEECT-----TSCEEEE-ESS-SEEEEET
T ss_pred ceeEEEec-----CCCEEEE-Ecc-EEEEEEC
Confidence 57777752 2234433 333 6776653
No 326
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=74.22 E-value=0.9 Score=44.53 Aligned_cols=36 Identities=25% Similarity=0.724 Sum_probs=28.4
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHHh
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHVT 884 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~~ 884 (987)
+...-.|.+|...+.. |+ .-+|||.|...|+.+.+.
T Consensus 15 ~~~~~~C~IC~~~~~~------------------pv-~~~CgH~fC~~Ci~~~~~ 50 (170)
T 3hcs_A 15 LESKYECPICLMALRE------------------AV-QTPCGHRFCKACIIKSIR 50 (170)
T ss_dssp CCGGGBCTTTCSBCSS------------------EE-ECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCCCCChhhcC------------------cE-ECCCCCHHHHHHHHHHHH
Confidence 4455689999987765 53 469999999999998753
No 327
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=73.91 E-value=45 Score=36.07 Aligned_cols=153 Identities=13% Similarity=0.138 Sum_probs=91.3
Q ss_pred CCEEEEEecCCeEEEEeC-CCC-------CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC----
Q 001978 31 NDVIVLGTSKGWLIRHDF-GAG-------DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK---- 98 (987)
Q Consensus 31 nn~l~~~~~~g~l~ridl-~~~-------~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~---- 98 (987)
+.++++.++.|.|-|..+ ... .+..+.+. .++.+..++.-.+..++++-|+ .|..|++...
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k----e~D~~~~~~~~~t~d~ll~fT~---~Gr~y~~~~~~lp~ 75 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK----QDDIVAHFFVCSTHDLILFFTT---QGRVYRAKAYDLPE 75 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCC----GGGCEEEEEEEETTSEEEEEET---TSEEEEEEGGGSCB
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC----CCCEEEEEEEeCCCCEEEEEeC---CCeEEEEEHHHCcC
Confidence 457899999999999976 111 01111111 2467888888888888888888 8999988631
Q ss_pred ---CCCceecc---CC-CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeE
Q 001978 99 ---WSKPRVLS---KL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGL 171 (987)
Q Consensus 99 ---~~k~k~L~---kl-kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi 171 (987)
..+-.++. ++ .|-.|.++.--++. . ....+++.|++|.|.-+.+..-...-+.=+....+.+. ..+.++
T Consensus 76 ~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~-~--~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~ 151 (327)
T 3uc1_A 76 ASRTARGQHVANLLAFQPEERIAQVIQIRGY-T--DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGA 151 (327)
T ss_dssp CCSSSCCEEHHHHTTCCTTCCEEEEEEESST-T--SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEE
T ss_pred CCccCCCEEHHHccCCCCCCEEEEEEEeccC-C--CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEE
Confidence 12333321 12 34455555433221 1 23479999999999988775421111111233456542 346665
Q ss_pred EEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 172 QMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 172 ~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
.... ....++++|...++|.|..
T Consensus 152 ~~~~-----~~d~ill~T~~G~~~rf~~ 174 (327)
T 3uc1_A 152 VLCS-----AGDDLLLVSANGQSIRFSA 174 (327)
T ss_dssp EEEC-----TTCEEEEEETTSEEEEEEC
T ss_pred EEec-----CCCEEEEEECCCeEEEEEC
Confidence 5442 2357888899999998864
No 328
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=73.23 E-value=23 Score=31.11 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=39.9
Q ss_pred HHHchhhHHHHHHhcCC-----ch--hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD-----PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~~--~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+++.|+|++|+...+. |. ....+....|.-++..|+|++|...|.+..
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV 66 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 47889999999988652 32 234688889999999999999999998865
No 329
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=73.07 E-value=82 Score=31.72 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhhcCC---CCh-HH----HHHHhcCcChHHHHHHHHHHHhhccCCchHHHHHHHH
Q 001978 391 DQVYLVQAEAAFATKDFHRAASFYAKINYI---LSF-EE----ITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMIS 462 (987)
Q Consensus 391 ~~V~~~~~~~l~~~g~y~~Aa~~~~~~~~~---~~~-E~----v~lkFl~~~~~~~L~~YL~~kl~~l~~~~~~q~~lL~ 462 (987)
.......|..++..|+|++|...|.+.... .++ .. ...-+...++.+.=..++..-+..-+.+... ....
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV--PQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH--HHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh--HHHH
Confidence 466788899999999999999999988621 111 11 2222334455544444555444432222111 1112
Q ss_pred HHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHcCChhHHHHHHHhHhhHHHHHH
Q 001978 463 TWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLLESYGRVEELVFFASLKEQHEIVVH 542 (987)
Q Consensus 463 ~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll~~~g~~e~~l~~a~~~~dy~~ll~ 542 (987)
.++..+|......... ....+......|++++..+.+.-....+...+.. + .....+.+-.+..
T Consensus 93 ~~lg~~~~~~~~~~~~--------~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~------~--~~~~~~~~~~la~ 156 (261)
T 3qky_A 93 YERAMCYYKLSPPYEL--------DQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRE------L--RAKLARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHHCCCTTS--------CCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH------H--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccc--------cchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHH------H--HHHHHHHHHHHHH
Confidence 2333334321110000 0123444556677777665543222222111111 0 0011222445678
Q ss_pred HHHhcccHHHHHHHHhC
Q 001978 543 HYIQQGEAKKALQMLRK 559 (987)
Q Consensus 543 ~yi~~~~~~~AL~~l~~ 559 (987)
.|...|+|++|+..+.+
T Consensus 157 ~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 157 LYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHH
Confidence 89999999999998864
No 330
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=73.02 E-value=38 Score=37.41 Aligned_cols=78 Identities=8% Similarity=-0.062 Sum_probs=37.4
Q ss_pred HHHcCChhHHHHHHHhH--------hhHHHHHHHHHhccc-HHHHHHHHhCC----CCchhhHHhhHHHHHh-HChHHHH
Q 001978 518 LESYGRVEELVFFASLK--------EQHEIVVHHYIQQGE-AKKALQMLRKP----AVPIDLQYKFAPDLIM-LDAYETV 583 (987)
Q Consensus 518 l~~~g~~e~~l~~a~~~--------~dy~~ll~~yi~~~~-~~~AL~~l~~~----~~~~~li~k~~~~Ll~-~~p~~ti 583 (987)
+...|+.++++...+.. .-|..+...|...|+ |++|++.+.+. ++....++..+..+.. .+.++++
T Consensus 107 ~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl 186 (382)
T 2h6f_A 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQEL 186 (382)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHH
Confidence 34445555555544331 112334456666775 88887776542 2223444444444432 3445555
Q ss_pred HHHHcCCCCCCC
Q 001978 584 ESWMTTNNLNPR 595 (987)
Q Consensus 584 ~~l~~~~~ld~~ 595 (987)
..+-+.-.++|.
T Consensus 187 ~~~~kal~ldP~ 198 (382)
T 2h6f_A 187 EFIADILNQDAK 198 (382)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHhCcc
Confidence 555433234444
No 331
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=72.99 E-value=3.9 Score=34.74 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=39.4
Q ss_pred HHHchhhHHHHHHhcCC-----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|++..+. |.....++...|..++..|+|++|.+.|.+..
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 48889999999998763 33333378889999999999999999998875
No 332
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=72.64 E-value=4.8 Score=39.01 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=44.2
Q ss_pred hHHHHHHchhhHHHHHHhcC-------------CchhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 366 DMWKVYLDMKEYAAALANCR-------------DPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 366 ~~W~~ll~~~~fe~Al~~~~-------------~~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
+.-+.++++|.|+-|.-++. .|..+.+++.-+|+.+|.+|+|..|...|.+..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34467999999999988763 134577899999999999999999999998865
No 333
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=72.53 E-value=1 Score=39.98 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=27.4
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+...-.|++|+..+.. | |+-||||.|-..|+....
T Consensus 26 ~p~~~~CpI~~~~m~d------------------P-V~~~cGhtf~r~~I~~~l 60 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD------------------P-VRLPSGTIMDRSIILRHL 60 (100)
T ss_dssp CSTTTBCTTTCSBCSS------------------E-EEETTTEEEEHHHHHHHT
T ss_pred CcHhhCCcCccCcccC------------------C-eECCCCCEEchHHHHHHH
Confidence 4445689999877655 4 456899999999999876
No 334
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=72.46 E-value=1.3 Score=37.95 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=27.6
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
+...-.|++|+..+.. | |+-+|||+|-..|+....
T Consensus 11 ~p~~~~CpI~~~~m~d------------------P-V~~~cGhtf~r~~I~~~l 45 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD------------------P-VRLPSGTVMDRSIILRHL 45 (85)
T ss_dssp CCTTTBCTTTCSBCSS------------------E-EECTTSCEEEHHHHHHHH
T ss_pred CchheECcccCchhcC------------------C-eECCCCCEECHHHHHHHH
Confidence 4446689999877655 4 456899999999999886
No 335
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=72.38 E-value=6.3 Score=33.97 Aligned_cols=49 Identities=16% Similarity=0.007 Sum_probs=38.4
Q ss_pred HHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.|+..|+|++|+...+... .-..++...|.-++..|+|++|.+.|.+..
T Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 16 EHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4778899999998876321 223577788999999999999999988765
No 336
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=72.09 E-value=48 Score=29.62 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=33.5
Q ss_pred HHHchhhHHHHHHhcCCc----------hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----------LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----------~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+...|+|++|+.+.+.. .....+....|..++..|+|++|...|.+..
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 18 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466677888887776431 1123467777888888888888888777664
No 337
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=71.89 E-value=21 Score=37.36 Aligned_cols=56 Identities=13% Similarity=-0.001 Sum_probs=30.1
Q ss_pred HHHHHHhcccHHHHHHHHhCC----CCchh-------hHHhhHHHHH-hHChHHHHHHHHcCCCCCCC
Q 001978 540 VVHHYIQQGEAKKALQMLRKP----AVPID-------LQYKFAPDLI-MLDAYETVESWMTTNNLNPR 595 (987)
Q Consensus 540 ll~~yi~~~~~~~AL~~l~~~----~~~~~-------li~k~~~~Ll-~~~p~~ti~~l~~~~~ld~~ 595 (987)
+...|...|+|++|++++.+. ++... .+...+..++ ..++.+++..+-+...++|.
T Consensus 164 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456777888888888877542 11111 2233333333 35677788777664445543
No 338
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=71.88 E-value=65 Score=33.67 Aligned_cols=65 Identities=8% Similarity=0.035 Sum_probs=40.3
Q ss_pred eeEEEEeCC--EEEEEecC------------CeEEEEeC-CCCC---ceeeEcCCCCCCccceeEEEeCCCCCeEEEEee
Q 001978 24 ITCMSAGND--VIVLGTSK------------GWLIRHDF-GAGD---SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIV 85 (987)
Q Consensus 24 i~~~~v~nn--~l~~~~~~------------g~l~ridl-~~~~---~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~ 85 (987)
+.+++++.+ .++++... +.|+.+|+ .... +..+..| ..+..+-++|.|. ++++ .
T Consensus 94 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~------~~~~~~~~s~dg~-l~~~-~ 165 (349)
T 1jmx_B 94 MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP------RQVYLMRAADDGS-LYVA-G 165 (349)
T ss_dssp SSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC------SSCCCEEECTTSC-EEEE-S
T ss_pred ccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC------CcccceeECCCCc-EEEc-c
Confidence 577788644 78887754 89999999 4221 2222322 2466677899998 6663 2
Q ss_pred cCCCccEEEEecCCC
Q 001978 86 GSGGAETFYTHAKWS 100 (987)
Q Consensus 86 ~~~~g~~~Y~~~~~~ 100 (987)
+..+.++....
T Consensus 166 ----~~i~~~d~~~~ 176 (349)
T 1jmx_B 166 ----PDIYKMDVKTG 176 (349)
T ss_dssp ----SSEEEECTTTC
T ss_pred ----CcEEEEeCCCC
Confidence 44655554433
No 339
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=71.81 E-value=72 Score=30.56 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=25.2
Q ss_pred hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 389 QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 389 ~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
....++...|..++..|+|++|.+.|.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 35 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDAL 35 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345677888999999999999999998765
No 340
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=71.58 E-value=57 Score=33.10 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=37.5
Q ss_pred HHHchhhHHHHHHhcCCch--hHhHHHHHHHHHHHh----cCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL--QRDQVYLVQAEAAFA----TKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~--~~~~V~~~~~~~l~~----~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+++.+... .-.......|..++. .|++++|...|.+..
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 69 (273)
T 1ouv_A 15 KSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC 69 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence 4778899999998875321 123456678888888 999999999998875
No 341
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=71.06 E-value=72 Score=38.00 Aligned_cols=161 Identities=11% Similarity=0.102 Sum_probs=89.8
Q ss_pred CceeEEEEeCCEEEEEec-----CCeEEEEeC-CCCCceee-EcCC-CCCCccceeEEEeCCCCCeEEEEeecCCC--cc
Q 001978 22 GVITCMSAGNDVIVLGTS-----KGWLIRHDF-GAGDSYDI-DLSA-GRPGEQSIHKVFVDPGGSHCIATIVGSGG--AE 91 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~-----~g~l~ridl-~~~~~~~~-~l~~-~~~~~~~i~~i~lDp~G~hlli~~~~~~~--g~ 91 (987)
+.++...-.++.+++... .+.|+|.+. .+.. ..+ +... .......+..+-..|.|++++.+.+.+|+ ..
T Consensus 70 ~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~ 148 (695)
T 2bkl_A 70 DSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQE-KVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAV 148 (695)
T ss_dssp CEECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCC-EEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCE
T ss_pred ccCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCc-EEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEE
Confidence 345666678888887765 356899998 4432 212 1111 01112367888889999999988773222 34
Q ss_pred EEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCc-------------EEEEEeccCccccceeeee
Q 001978 92 TFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQ-------------LHEMAVDEKDKREKYIKLL 158 (987)
Q Consensus 92 ~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~-------------i~e~~i~~~~~~e~~~k~v 158 (987)
.+-++....+......+.+....+++|.++ .+.|+.++.++. ||...+..+... -+.+
T Consensus 149 i~v~dl~tg~~~~~~~~~~~~~~~~~wspD------g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~---~~lv 219 (695)
T 2bkl_A 149 LHVIDVDSGEWSKVDVIEGGKYATPKWTPD------SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK---DTVV 219 (695)
T ss_dssp EEEEETTTCCBCSSCCBSCCTTCCCEECTT------SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG---CEEE
T ss_pred EEEEECCCCCCcCCcccCcccccceEEecC------CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh---ceEE
Confidence 555565554433111233333368999843 125666665543 777776543111 2345
Q ss_pred eeeCCCCCceeeEEEEeeccCCCceEEEEEECCC----eEEEE
Q 001978 159 FELNELPEAFMGLQMETASLSNGTRYYVMAVTPT----RLYSF 197 (987)
Q Consensus 159 ~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~----rly~f 197 (987)
+..++.+..+.++.|. .+.+++++.+... .+|.+
T Consensus 220 ~~~~~~~~~~~~~~~S-----pDG~~l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 220 HERTGDPTTFLQSDLS-----RDGKYLFVYILRGWSENDVYWK 257 (695)
T ss_dssp ECCCCCTTCEEEEEEC-----TTSCCEEEEEEETTTEEEEEEE
T ss_pred EecCCCCEEEEEEEEC-----CCCCEEEEEEeCCCCceEEEEE
Confidence 5555433456777765 2235666655433 66655
No 342
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=70.59 E-value=89 Score=31.10 Aligned_cols=50 Identities=16% Similarity=0.053 Sum_probs=39.9
Q ss_pred HHHHchhhHHHHHHhcCC------------chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRD------------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~------------~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..|...|+|++|+.+.+. +.....++...|..++..|+|++|.+.|.+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 112 (283)
T 3edt_B 51 LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 112 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 457778999999888653 12345678899999999999999999998875
No 343
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=70.57 E-value=52 Score=39.11 Aligned_cols=140 Identities=11% Similarity=0.053 Sum_probs=71.2
Q ss_pred cCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCc-----cEEEEecCCC-CceeccCCCC-c
Q 001978 39 SKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGA-----ETFYTHAKWS-KPRVLSKLKG-L 111 (987)
Q Consensus 39 ~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g-----~~~Y~~~~~~-k~k~L~klkg-~ 111 (987)
..+.|+++|+.......+... ......+..+-..|.|.++++++. ++ ..+.++.... +.+.+....+ .
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~---~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~ 307 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTG--EPKEKFLTNLSWSPDENILYVAEV---NRAQNECKVNAYDAETGRFVRTLFVETDKH 307 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCC--SCTTCEEEEEEECTTSSEEEEEEE---CTTSCEEEEEEEETTTCCEEEEEEEEECSS
T ss_pred CeeEEEEEECCCCceEeeccC--CCCceeEeeEEEECCCCEEEEEEe---CCCCCeeEEEEEECCCCceeeEEEEccCCC
Confidence 346799999933333222221 112356889999999999988765 33 5555665444 3333321111 1
Q ss_pred ---eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceee-EEEEeeccCCCceEEEE
Q 001978 112 ---VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMG-LQMETASLSNGTRYYVM 187 (987)
Q Consensus 112 ---~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~g-i~~~~~~~~~~~~~~i~ 187 (987)
.+.+++|.+.. +.+-+..+..+|.+-...++... +..++ +.....++.+ +.|. .+.+.+++
T Consensus 308 ~~~~~~~~~~sp~~----dg~~l~~~~~~g~~~l~~~~~~~---~~~~~---l~~~~~~v~~~~~~s-----pdg~~l~~ 372 (706)
T 2z3z_A 308 YVEPLHPLTFLPGS----NNQFIWQSRRDGWNHLYLYDTTG---RLIRQ---VTKGEWEVTNFAGFD-----PKGTRLYF 372 (706)
T ss_dssp CCCCCSCCEECTTC----SSEEEEEECTTSSCEEEEEETTS---CEEEE---CCCSSSCEEEEEEEC-----TTSSEEEE
T ss_pred eECccCCceeecCC----CCEEEEEEccCCccEEEEEECCC---CEEEe---cCCCCeEEEeeeEEc-----CCCCEEEE
Confidence 24567887410 11234445556654444443211 11233 3322345766 4554 23356666
Q ss_pred EECC-----CeEEEEe
Q 001978 188 AVTP-----TRLYSFT 198 (987)
Q Consensus 188 ast~-----~rly~f~ 198 (987)
+++. .+||.|.
T Consensus 373 ~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 373 ESTEASPLERHFYCID 388 (706)
T ss_dssp EESSSCTTCBEEEEEE
T ss_pred EecCCCCceEEEEEEE
Confidence 5553 3788775
No 344
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=70.33 E-value=1.3e+02 Score=33.59 Aligned_cols=151 Identities=13% Similarity=0.097 Sum_probs=81.8
Q ss_pred eeEEEEe---CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCC--ccEEEEecC
Q 001978 24 ITCMSAG---NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGG--AETFYTHAK 98 (987)
Q Consensus 24 i~~~~v~---nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~--g~~~Y~~~~ 98 (987)
-+.+++. ++.||++-..+.|.+||+....+..+- + .......|-+||.|.+++++-.+.+. ...+++...
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~----~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-S----GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-C----CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-c----CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence 3778887 478888887789999999554454432 2 13567899999999988888641111 123444332
Q ss_pred C--CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEc-CCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEe
Q 001978 99 W--SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMET 175 (987)
Q Consensus 99 ~--~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~ 175 (987)
. ...+.+..++ ....|++++. .+.+.+.. ..+.|+.+..+.+ ....+..++.. ..-.||.+..
T Consensus 214 g~~~~~~~l~~~~--~p~giavdp~------~g~lyv~d~~~~~V~~~~~~~~-----~~~~~~~~~~~-~~P~gia~~p 279 (430)
T 3tc9_A 214 SGFKVITELTKGQ--NCNGAETHPI------NGELYFNSWNAGQVFRYDFTTQ-----ETTPLFTIQDS-GWEFHIQFHP 279 (430)
T ss_dssp GTSCSEEEEEECS--SCCCEEECTT------TCCEEEEETTTTEEEEEETTTT-----EEEEEEECSSS-SCCEEEEECT
T ss_pred CceeeeeeeccCC--CceEEEEeCC------CCEEEEEECCCCEEEEEECCCC-----cEEEEEEcCCC-CcceeEEEcC
Confidence 1 1112333222 2345555521 24566554 3466666554432 12234444432 1246777752
Q ss_pred eccCCCceEEEEEEC-CCeEEEEe
Q 001978 176 ASLSNGTRYYVMAVT-PTRLYSFT 198 (987)
Q Consensus 176 ~~~~~~~~~~i~ast-~~rly~f~ 198 (987)
+.+++.++.+ ..+++.|.
T Consensus 280 -----dG~~lyv~d~~~~~I~~~~ 298 (430)
T 3tc9_A 280 -----SGNYAYIVVVNQHYILRSD 298 (430)
T ss_dssp -----TSSEEEEEETTTTEEEEEE
T ss_pred -----CCCEEEEEECCCCEEEEEe
Confidence 2244444443 56777653
No 345
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=70.15 E-value=1.2 Score=39.32 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=27.5
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEcCC-ChhHHHhHHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCG-HAFHAQCLIAHV 883 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCg-H~fH~~CL~~~~ 883 (987)
+...-.|.+|...+.. | |+-+|| |.|-..|+....
T Consensus 19 ~p~~~~CpI~~~~m~d------------------P-V~~~cG~htf~r~cI~~~l 54 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCD------------------P-VVLPSSRVTVDRSTIARHL 54 (98)
T ss_dssp CCTTTBCTTTCSBCSS------------------E-EECTTTCCEEEHHHHHHHT
T ss_pred CcHhcCCcCccccccC------------------C-eECCCCCeEECHHHHHHHH
Confidence 4445689999877655 4 446999 999999999876
No 346
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=70.11 E-value=6.7 Score=36.75 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=40.7
Q ss_pred HHHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
++|++.|+|++|++..+... .-..++...|.-++..|+|++|...|.+..
T Consensus 39 ~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 39 KLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 46889999999999876421 224678889999999999999999998875
No 347
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=69.97 E-value=19 Score=43.53 Aligned_cols=132 Identities=11% Similarity=0.005 Sum_probs=74.8
Q ss_pred cceehhHHHHHhhcCCCceeEEEEeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCc--cceeEEEeCCCCCeEEEE
Q 001978 6 QVFQVDVLERYAAKGRGVITCMSAGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGE--QSIHKVFVDPGGSHCIAT 83 (987)
Q Consensus 6 ~~f~~~~~~~~~~~~~~~i~~~~v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~--~~i~~i~lDp~G~hlli~ 83 (987)
+.|.||.+-.- .......+++-+.+=-+++...|.|.++|+...+...+ +....... .....+.+.|.|.++++.
T Consensus 3 ~~~tl~~~~~~--~~~~~~~~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Spdg~~l~~~ 79 (740)
T 4a5s_A 3 KTYTLTDYLKN--TYRLKLYSLRWISDHEYLYKQENNILVFNAEYGNSSVF-LENSTFDEFGHSINDYSISPDGQFILLE 79 (740)
T ss_dssp EECCHHHHHHT--CSCCCCCCEEECSSSEEEEEETTEEEEEETTTCCEEEE-ECTTTTTTCCSCCCEEEECTTSSEEEEE
T ss_pred CceeHHHHhcC--cccccccccEECCCCcEEEEcCCcEEEEECCCCceEEE-EechhhhhhcccccceEECCCCCEEEEE
Confidence 34566665543 33334567777755334444489999999932332211 22111111 122447889999999998
Q ss_pred eecC------CCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC
Q 001978 84 IVGS------GGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK 148 (987)
Q Consensus 84 ~~~~------~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~ 148 (987)
++.. ..|..|-++....+.+.|.... -.+.+++|+|+ .+.|..+ .++.||...+..+
T Consensus 80 ~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~-~~~~~~~~SPd------G~~la~~-~~~~i~~~~~~~~ 142 (740)
T 4a5s_A 80 YNYVKQWRHSYTASYDIYDLNKRQLITEERIP-NNTQWVTWSPV------GHKLAYV-WNNDIYVKIEPNL 142 (740)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSSCCC-TTEEEEEECSS------TTCEEEE-ETTEEEEESSTTS
T ss_pred ECCeeeEEEccceEEEEEECCCCcEEEcccCC-CcceeeEECCC------CCEEEEE-ECCeEEEEECCCC
Confidence 8710 0144445555555566665432 36899999943 1245544 6677888766543
No 348
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=69.57 E-value=1.1e+02 Score=32.27 Aligned_cols=61 Identities=7% Similarity=-0.064 Sum_probs=38.8
Q ss_pred eEEEEe--CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCC---------------CccceeEEEeCCCCCeEEEEee
Q 001978 25 TCMSAG--NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRP---------------GEQSIHKVFVDPGGSHCIATIV 85 (987)
Q Consensus 25 ~~~~v~--nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~---------------~~~~i~~i~lDp~G~hlli~~~ 85 (987)
.++++. ++++|+++.+|.|+++|.....+..+..+.... ....+..|.+||.+.+++|+..
T Consensus 22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 456664 356999999999999998434455454322100 0135788999984346777754
No 349
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=68.73 E-value=1.7 Score=34.57 Aligned_cols=33 Identities=21% Similarity=0.487 Sum_probs=23.0
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCC--C---hhHHHhHHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCG--H---AFHAQCLIAHV 883 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCg--H---~fH~~CL~~~~ 883 (987)
....|.+|...- + . ++ +-||. | .||.+||..-+
T Consensus 5 ~~~~CrIC~~~~-~-----~------------~l-~~PC~C~gs~~~~H~~Cl~~W~ 42 (60)
T 1vyx_A 5 DVPVCWICNEEL-G-----N------------ER-FRACGCTGELENVHRSCLSTWL 42 (60)
T ss_dssp SCCEETTTTEEC-S-----C------------CC-CCSCCCSSGGGSCCHHHHHHHH
T ss_pred CCCEeEEeecCC-C-----C------------ce-ecCcCCCCchhhhHHHHHHHHH
Confidence 356799997541 1 1 44 57865 4 89999999876
No 350
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=68.64 E-value=22 Score=42.57 Aligned_cols=129 Identities=9% Similarity=-0.010 Sum_probs=73.8
Q ss_pred eehhHHHHHhhcCCCceeEEEEeCC-EEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEee
Q 001978 8 FQVDVLERYAAKGRGVITCMSAGND-VIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIV 85 (987)
Q Consensus 8 f~~~~~~~~~~~~~~~i~~~~v~nn-~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~ 85 (987)
|.++.+-... ....+.+++.+.+ .++....+|+|.++|+ .+.....+.-+ ......|..+-+.|.|++++.+++
T Consensus 5 ~~~~~~~~~~--~~~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~--~~~~~~v~~~~~SpDg~~l~~~~~ 80 (723)
T 1xfd_A 5 VTVEDLFSED--FKIHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGK--KIESLRAIRYEISPDREYALFSYN 80 (723)
T ss_dssp CCHHHHTCTT--TCCCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTT--TTTTTTCSEEEECTTSSEEEEEES
T ss_pred ccHHHHhCCC--CcccccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccc--cccccccceEEECCCCCEEEEEec
Confidence 5555554332 2223455555543 2223356789999999 54433222211 110124889999999999988875
Q ss_pred cC------CCccEEEEecCCCCceeccCCCCc--eEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEecc
Q 001978 86 GS------GGAETFYTHAKWSKPRVLSKLKGL--VVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDE 147 (987)
Q Consensus 86 ~~------~~g~~~Y~~~~~~k~k~L~klkg~--~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~ 147 (987)
.. .++..+-++....+.+.|....++ .+.+++|+++ .+.++.++. +.|+...+..
T Consensus 81 ~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPd------G~~la~~~~-~~i~~~~~~~ 143 (723)
T 1xfd_A 81 VEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK------GQQLIFIFE-NNIYYCAHVG 143 (723)
T ss_dssp CCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS------TTCEEEEET-TEEEEESSSS
T ss_pred CccceeecceeeEEEEECCCCceEeccCCccccccccccEECCC------CCEEEEEEC-CeEEEEECCC
Confidence 11 014555566665566667654443 3889999943 225666654 6777766654
No 351
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=68.29 E-value=4.4 Score=33.40 Aligned_cols=49 Identities=16% Similarity=0.357 Sum_probs=36.8
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+...+.. .....+....|..++..|+|++|...|.+..
T Consensus 18 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467788999988886531 1224567788888999999999998887765
No 352
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=67.97 E-value=45 Score=34.68 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=35.2
Q ss_pred HHHHHchhhHHHHHHhcCC-----c---hhH--hHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 368 WKVYLDMKEYAAALANCRD-----P---LQR--DQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 368 W~~ll~~~~fe~Al~~~~~-----~---~~~--~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
...++..|+|++|+++.+. + ... ...+...|..++..|+|++|...|.+..
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al 142 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence 3457888999999988642 1 111 2233456778888889999998888765
No 353
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.86 E-value=1.1 Score=37.37 Aligned_cols=29 Identities=28% Similarity=0.721 Sum_probs=21.6
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCCh-hHHHhHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHA-FHAQCLI 880 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~-fH~~CL~ 880 (987)
...|.+|...... .++.||||. |...|+.
T Consensus 25 ~~~C~IC~~~~~~-------------------~~~~pCgH~~~C~~C~~ 54 (75)
T 2ecg_A 25 EKLCKICMDRNIA-------------------IVFVPCGHLVTCKQCAE 54 (75)
T ss_dssp HHSCSSSCSSCCC-------------------BCCSSSCCCCBCHHHHH
T ss_pred CCCCCcCCCCCCC-------------------EEEecCCCHHHHHHHhh
Confidence 3479999765433 344699999 9999983
No 354
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=67.71 E-value=7 Score=37.10 Aligned_cols=49 Identities=16% Similarity=0.045 Sum_probs=37.7
Q ss_pred HHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+++.|+|++|+.+.+... .-...+...|.-++..|+|++|...|.+..
T Consensus 45 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 45 DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5778899999998876321 223566778889999999999999998875
No 355
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=67.67 E-value=8.1 Score=34.41 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=39.5
Q ss_pred HHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+...+... .-..++...|.-++..|+|++|...|.+..
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 65 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4788999999998875321 224678888999999999999999998875
No 356
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=66.97 E-value=9.7 Score=32.56 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=38.5
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+.+.+.. ..-..+....|..++..|+|++|...|.+..
T Consensus 13 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 13 KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 477889999999986531 1224567788999999999999999998775
No 357
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=66.91 E-value=0.91 Score=41.26 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=53.5
Q ss_pred hhhhccccHHHHHHHHHh-cCHHHHHHHhhccCCCHHHHHHHHHHHHHHHhccccCCChhhHHHHHHHHHhcCCCcCccc
Q 001978 692 HIYGMMSMHEEAVALALQ-VDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIED 770 (987)
Q Consensus 692 ~L~~~~g~~~eAl~l~l~-~di~lA~~~~~~~~~d~~~~kkLWl~ll~~~i~~~~~~~~~~i~~~l~~L~~~~~~l~i~d 770 (987)
.+|.+.+.|++||.+.-+ +-...|+++|.... |.+ +=..|+++++.... ..+ ....|=.|-.+|...-
T Consensus 14 ~~ykkN~rw~qSI~L~KkDkLykDAietAa~S~-d~e----laEeLL~yFVe~g~----kEc--F~A~LytCYdLlrpDv 82 (125)
T 3qil_A 14 LVPRGSHMWKQSVELAKKDSLYKDAMQYASESK-DTE----LAEELLQWFLQEEK----REC--FGACLFTCYDLLRPDV 82 (125)
T ss_dssp CCSSSCCCCSSCCCCCSCCCCSSHHHHTTTSSC-CSH----HHHHHHHHHTTSCS----HHH--HHHHHHHHTTCSCTTH
T ss_pred chhhccccHHHHHHHHHhcccHHHHHHHHHHcC-CHH----HHHHHHHHHHHcCc----hHH--HHHHHHHHHhccChHH
Confidence 345555555555555554 33555666663332 443 55667777776532 111 2233434433555444
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 001978 771 ILPFFPDFALIDDFKEAICSSLDDYNKQIEQLKQE 805 (987)
Q Consensus 771 lL~~~p~~~~I~~~Kd~L~~~L~~y~~~i~~l~~~ 805 (987)
||.+---+--++-...+++.++++|+.+++.+...
T Consensus 83 VLElaWr~~l~Df~mPY~Iqv~re~~~kv~~L~~~ 117 (125)
T 3qil_A 83 VLELAWRHNIMDFAMPYFIQVMKEYLTKVDKLDAS 117 (125)
T ss_dssp HHHTTSSSSCCCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccchhHHHHHHHHHHHHHHHHHH
Confidence 44432211112223446678899999888877643
No 358
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=66.88 E-value=8.8 Score=32.53 Aligned_cols=50 Identities=12% Similarity=0.333 Sum_probs=39.8
Q ss_pred HHHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..++..|+|++|+.+.+... ....+....|..++..|+|++|.+.|.+..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34788999999998875321 224567889999999999999999998875
No 359
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=66.82 E-value=69 Score=38.20 Aligned_cols=137 Identities=11% Similarity=0.052 Sum_probs=76.0
Q ss_pred eEEEEeCC--EEEEEecCCe-------------EEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC-
Q 001978 25 TCMSAGND--VIVLGTSKGW-------------LIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS- 87 (987)
Q Consensus 25 ~~~~v~nn--~l~~~~~~g~-------------l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~- 87 (987)
.+++.+.+ .++.+...+. |+++++ .+. .....+-........+..+..+|.|.++++++...
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~-~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 249 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP-SKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW 249 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG-GGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCc-hhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC
Confidence 45566544 6777766444 999999 433 22121211111124677888999999999887621
Q ss_pred CCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcC----CCcEEEEEeccCccccceeeeeeeeCC
Q 001978 88 GGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD----TGQLHEMAVDEKDKREKYIKLLFELNE 163 (987)
Q Consensus 88 ~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~----~G~i~e~~i~~~~~~e~~~k~v~~l~~ 163 (987)
++.+.|++.....+.+.|..-.+ .+.++.|. + .+ +++.|+ ++.|+...+... ....++.++.-..
T Consensus 250 ~~~~l~~~~~~~~~~~~l~~~~~-~~~~~~~~-~------g~-l~~~s~~~~~~~~l~~~d~~~~--~~~~~~~l~~~~~ 318 (695)
T 2bkl_A 250 SENDVYWKRPGEKDFRLLVKGVG-AKYEVHAW-K------DR-FYVLTDEGAPRQRVFEVDPAKP--ARASWKEIVPEDS 318 (695)
T ss_dssp TEEEEEEECTTCSSCEEEEECSS-CCEEEEEE-T------TE-EEEEECTTCTTCEEEEEBTTBC--SGGGCEEEECCCS
T ss_pred CceEEEEEcCCCCceEEeecCCC-ceEEEEec-C------Cc-EEEEECCCCCCCEEEEEeCCCC--CccCCeEEecCCC
Confidence 12266777544445666653233 44566674 1 23 777775 477887766543 1123455532211
Q ss_pred CCCceeeEEEE
Q 001978 164 LPEAFMGLQME 174 (987)
Q Consensus 164 ~~~~I~gi~~~ 174 (987)
...|.++.+.
T Consensus 319 -~~~l~~~~~~ 328 (695)
T 2bkl_A 319 -SASLLSVSIV 328 (695)
T ss_dssp -SCEEEEEEEE
T ss_pred -CCeEEEEEEE
Confidence 1347777664
No 360
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=65.97 E-value=37 Score=33.41 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=39.5
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+...|+|++|+++.+.. .....+....|..++..|+|++|.+.|.+..
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 118 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 477889999999987642 1234677888999999999999999998865
No 361
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=65.51 E-value=1.6e+02 Score=32.01 Aligned_cols=297 Identities=12% Similarity=0.124 Sum_probs=152.8
Q ss_pred EeCCEEEEEecCC---eEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEE-EEecCCC-Cc
Q 001978 29 AGNDVIVLGTSKG---WLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF-YTHAKWS-KP 102 (987)
Q Consensus 29 v~nn~l~~~~~~g---~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~-Y~~~~~~-k~ 102 (987)
-+++++|+=-..| +|..+|+ +|+++.+-++.. ...-++|+-.-+.+.. |... -++...+ |.
T Consensus 34 ESDkyicVrE~~~~~~~VvIiDl~n~~~~~Rrpi~A--------dsAIMnP~~~ViALra-----g~~LQiFnletK~kl 100 (365)
T 2xzh_A 34 ESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISA--------DSAIMNPASKVIALKA-----GKTLQIFNIEMKSKM 100 (365)
T ss_dssp EETTEEEEEEEETTEEEEEEEETTSTTSCEEEECCC--------SEEEECSSSSEEEEEE-----TTEEEEEETTTTEEE
T ss_pred ecCceEEEEecCCCCCEEEEEECCCCCCcccccccc--------ceeeeCCCccEEEEec-----CCeEEEechHHhhhh
Confidence 4566777766444 8999999 999987766652 2344688887444442 4333 3443332 22
Q ss_pred eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccCCCc
Q 001978 103 RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLSNGT 182 (987)
Q Consensus 103 k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~ 182 (987)
|.-. -.-+|.-=-|-.+ ..+-+=|.+. ||.-.+++...+.|-+..--+|.+ ..|.+-..+ .+.
T Consensus 101 ks~~--~~e~VvfWkWis~-------~~L~lVT~ta-VyHWs~~~~s~P~kvFdR~~~L~~--~QIInY~~d-----~~~ 163 (365)
T 2xzh_A 101 KAHT--MTDDVTFWKWISL-------NTVALVTDNA-VYHWSMEGESQPVKMFDRHSSLAG--CQIINYRTD-----AKQ 163 (365)
T ss_dssp EEEE--CSSCEEEEEECSS-------SEEEEEESSE-EEEEESSTTCCCEEEEECCGGGTT--CEEEEEEEC-----TTS
T ss_pred ccee--cCCccEEEEecCC-------CeEEEEcCCc-EEEEcccCCCCCceeeecchhccc--ceEEEEEEC-----CCC
Confidence 2211 1125656666522 2455556655 888888654223222222223332 234444443 344
Q ss_pred eEEEEEEC---CCeEEEEecCCchHHHHhhhhcccc-------cccccCCCcCCCcceeeeccCCCc---eEEEeecCc-
Q 001978 183 RYYVMAVT---PTRLYSFTGFGSLDTVFASYLDRAV-------HFMELPGEILNSELHFFIKQRRAV---HFAWLSGAG- 248 (987)
Q Consensus 183 ~~~i~ast---~~rly~f~g~~~l~~lf~~~~~~~~-------~~~elp~~~~~s~l~~~~~~~~~~---~faW~t~~g- 248 (987)
+|++++-- ..++ .| .-+||+.-++.+. .|..+.- .+...|+ .|||-+..|
T Consensus 164 kW~~l~GI~~~~~~v---~G---~mQLYS~er~~sQ~ieGhaa~F~~~~~----------~g~~~~~~lf~fa~r~~~g~ 227 (365)
T 2xzh_A 164 KWLLLTGISAQQNRV---VG---AMQLYSVDRKVSQPIEGHAASFAQFKM----------EGNAEESTLFCFAVRGQAGG 227 (365)
T ss_dssp CEEEEEEEEEETTEE---EE---EEEEEETTTTEEEEECCSEEEEEEECC----------TTCSSCEEEEEEEEEETTEE
T ss_pred CEEEEEeEeccCCcc---ce---eEEEEeecccccceeeeeeeeeEEEec----------CCCCCCceEEEEEEecCCCc
Confidence 66665432 2222 22 1223433222111 1221111 1111122 466766655
Q ss_pred -eEEEEeecCCCCCCCCCCCccccccccccccccCCCCCCCCCcccccCC-ceEEEEE--CCEEEEEecCCCceEEEEEe
Q 001978 249 -IYHGGLNFGAQRSSPNGDENFVENKALLSYSKLSEGAEAVKPGSMAVSE-YHFLLLM--GNKVKVVNRISEQIIEELQF 324 (987)
Q Consensus 249 -i~~g~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~p~si~lT~-~h~llL~--~~~l~vvn~l~~~~v~~~~l 324 (987)
+.+=+++... . ..+.+... ..+. .+|+.....=|++|-+++ |-++.+. ..-|.++...++.++|...+
T Consensus 228 kLhIiEi~~~~--~---~~~~f~kk--~vdi-~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrI 299 (365)
T 2xzh_A 228 KLHIIEVGTPP--T---GNQPFPKK--AVDV-FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 299 (365)
T ss_dssp EEEEEECSSCC--T---TCCCCCCE--EEEE-CCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEEcCCCC--C---CCCCcccc--ccee-eCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEecc
Confidence 2232232210 0 11122110 0111 122222233488887764 4444333 58888888889999888887
Q ss_pred cCCCCccccceeeEeeccCCCeEEEEeCCcEEEEEcccchhhHHHHHHchhhHHHHHHhcC
Q 001978 325 DQTSDSISRGIIGLCSDATAGVFYAYDQNSIFQVSVNDEGRDMWKVYLDMKEYAAALANCR 385 (987)
Q Consensus 325 ~~~~~~~~~~~~gl~~D~~~~~~~i~S~~~i~~~~~~~e~~~~W~~ll~~~~fe~Al~~~~ 385 (987)
. .+.+.--+.+..++-+..+..++-+.....+|+..+=++.-...+-+.|+++|.
T Consensus 300 S------~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ivpyi~~~l~n~~LA~~lA~ 354 (365)
T 2xzh_A 300 S------GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAV 354 (365)
T ss_dssp C------SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHHHHHHHTTCCHHHHHHHHH
T ss_pred C------CCceEEecccCCCCcEEEEcCCCEEEEEEECcccEehhhhhcCCCHHHHHHHHH
Confidence 3 223322233445678889999888877778888888755545678889999875
No 362
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=65.46 E-value=5.4 Score=34.25 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=36.9
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|++..+.. ..-..++...|.-++..|+|++|.+.|.+..
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 13 SLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 477888899888876531 1224567788888999999999998888775
No 363
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=65.44 E-value=1.4e+02 Score=31.42 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=61.8
Q ss_pred CceeEEEEeC-CEEEEEecCC-------------------------eEEEEeCCCCCceeeEcCCCCCCccceeEEEeCC
Q 001978 22 GVITCMSAGN-DVIVLGTSKG-------------------------WLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDP 75 (987)
Q Consensus 22 ~~i~~~~v~n-n~l~~~~~~g-------------------------~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp 75 (987)
+.++++|+.. +.++++...+ +|+++|.....+... .. .........|.+||
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~--~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS-SG--KNLFYLPHGLSIDT 100 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-EC--TTTCSSEEEEEECT
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-cC--CCccCCceEEEECC
Confidence 4689999975 3555555444 699999832333221 11 11124678999999
Q ss_pred CCCeEEEEeecCCCccEEEEecCCC--CceeccC--------CCCceEEEEeecCCCCCCCCcceEEEEc--CCCcEEEE
Q 001978 76 GGSHCIATIVGSGGAETFYTHAKWS--KPRVLSK--------LKGLVVNAVAWNRQQITEASTKEIILGT--DTGQLHEM 143 (987)
Q Consensus 76 ~G~hlli~~~~~~~g~~~Y~~~~~~--k~k~L~k--------lkg~~i~sVaw~~~~~~~~st~~iLiGt--~~G~i~e~ 143 (987)
.|. ++++.. +++..+-+..... ....+.. -.-.....||+++. .+.+++.. .++.|+..
T Consensus 101 ~g~-l~v~d~--~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~------~g~lyv~d~~~~~~I~~~ 171 (329)
T 3fvz_A 101 DGN-YWVTDV--ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS------TGAVFVSDGYCNSRIVQF 171 (329)
T ss_dssp TSC-EEEEET--TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT------TCCEEEEECSSCCEEEEE
T ss_pred CCC-EEEEEC--CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC------CCeEEEEeCCCCCeEEEE
Confidence 998 555533 1456665654332 2333321 01125778899832 23566654 35666655
Q ss_pred E
Q 001978 144 A 144 (987)
Q Consensus 144 ~ 144 (987)
.
T Consensus 172 ~ 172 (329)
T 3fvz_A 172 S 172 (329)
T ss_dssp C
T ss_pred c
Confidence 4
No 364
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=65.39 E-value=9.8 Score=33.54 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=38.7
Q ss_pred HHHchhhHHHHHHhcCC----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+++.+. ...-..+....|..++..|+|++|.+.|.+..
T Consensus 25 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 25 ECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 47788999999988652 11235678888999999999999999998875
No 365
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=64.83 E-value=1.3e+02 Score=31.09 Aligned_cols=27 Identities=7% Similarity=-0.107 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 392 QVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 392 ~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
......+..++.+|+|++|...|.+..
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l 102 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 344566899999999999999998865
No 366
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=64.81 E-value=8 Score=44.64 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=44.0
Q ss_pred ceeEEEEeC--------CEEEEEecCCeEEEEeCCCC---------CceeeEcCCCCCCccceeEEEeCCCCCeEEEEee
Q 001978 23 VITCMSAGN--------DVIVLGTSKGWLIRHDFGAG---------DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIV 85 (987)
Q Consensus 23 ~i~~~~v~n--------n~l~~~~~~g~l~ridl~~~---------~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~ 85 (987)
..|++||.. .++++||.+|+|+++=+.++ .++++++-.. ..+|..+-+|+.+.||.|.|.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~---~~pI~~m~l~~~~~~Lyv~s~ 481 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFRE---PTTISAMELSTKQQQLYIGST 481 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSS---CCCCCEEEEETTTTEEEEEBS
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCC---CCccceEEEcCCCCEEEEEEC
Confidence 468888764 27899999999999977222 2345555321 367899999999999999887
No 367
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=64.66 E-value=40 Score=35.03 Aligned_cols=50 Identities=14% Similarity=0.033 Sum_probs=35.3
Q ss_pred HHHHchhhHHHHHHhcCC-----ch-----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRD-----PL-----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~-----~~-----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..++..|+|++|+++.+. +. .........|..+...|+|++|...|.+..
T Consensus 83 ~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 142 (293)
T 2qfc_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 357888999999887641 11 122334557788888899999999987764
No 368
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=64.37 E-value=5.6 Score=36.14 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh
Q 001978 393 VYLVQAEAAFATKDFHRAASFYAKI 417 (987)
Q Consensus 393 V~~~~~~~l~~~g~y~~Aa~~~~~~ 417 (987)
++...|..+...|+|++|.+.|.+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455555555555555554443
No 369
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=64.36 E-value=69 Score=31.95 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=34.5
Q ss_pred hhHHHHHHhcC-----CchhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 375 KEYAAALANCR-----DPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 375 ~~fe~Al~~~~-----~~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..|++|+++++ ++.....++...|..++..|+|++|...|.+..
T Consensus 22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 70 (283)
T 3edt_B 22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDAL 70 (283)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 46777777754 223456788899999999999999999988765
No 370
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=64.26 E-value=9.1 Score=35.16 Aligned_cols=49 Identities=8% Similarity=-0.024 Sum_probs=38.8
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+.+.+.. ..-..++...|.-++..|+|++|...|.+..
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 478889999999987631 1223567788999999999999999998875
No 371
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=63.98 E-value=7.4 Score=36.70 Aligned_cols=50 Identities=20% Similarity=0.117 Sum_probs=40.3
Q ss_pred HHHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..++..|+|++|+++.+... .-..++...|.-++..|+|++|...|.+..
T Consensus 19 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 72 (164)
T 3sz7_A 19 NAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELAT 72 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 35788899999999876321 234678889999999999999999998875
No 372
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=63.95 E-value=7.7 Score=46.40 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=42.0
Q ss_pred eeEEEEeC--------CEEEEEecCCeEEEEeC-CCCC--------ceeeEcCCCCCCccceeEEEeCCCCCeEEEEee
Q 001978 24 ITCMSAGN--------DVIVLGTSKGWLIRHDF-GAGD--------SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIV 85 (987)
Q Consensus 24 i~~~~v~n--------n~l~~~~~~g~l~ridl-~~~~--------~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~ 85 (987)
.|+++|.- .++++||.+|+|+++=+ .... ++++++-. ...+|..+-+|+.+.||+|.|.
T Consensus 414 lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~---~~~pI~~L~ld~~~~~LYV~t~ 489 (667)
T 4gz8_A 414 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFR---EPTTISAMELSTKQQQLYIGST 489 (667)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSS---SCCCCCEEEEETTTTEEEEEBS
T ss_pred eeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecC---CCceeeeEEEcCCCCEEEEEEC
Confidence 57777731 48999999999999854 1111 23444432 2368899999999999999987
No 373
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=63.54 E-value=1.3 Score=35.62 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=22.3
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCCh-hHHHhHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHA-FHAQCLIAH 882 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~-fH~~CL~~~ 882 (987)
...|.+|...... . .+++.||||. |-..|+...
T Consensus 7 ~~~C~IC~~~~~~-----~------------~~~~~pCgH~~~C~~C~~~~ 40 (63)
T 2vje_B 7 LKPCSLCEKRPRD-----G------------NIIHGRTGHLVTCFHCARRL 40 (63)
T ss_dssp GSBCTTTSSSBSC-----E------------EEEETTEEEEEECHHHHHHH
T ss_pred CCCCcccCCcCCC-----e------------EEEecCCCCHhHHHHHHHHH
Confidence 4679999765333 1 2233399998 999998643
No 374
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=63.48 E-value=1.8e+02 Score=32.05 Aligned_cols=154 Identities=11% Similarity=0.065 Sum_probs=90.8
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC--C-------CCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDF--G-------AGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl--~-------~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
..|..+++..+..++.+.+|.||-|-. + +.. .....|.......+|.+|.. ...|.++-+. +|.+
T Consensus 127 ~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~-~~~~~p~~~~~~~~i~~va~--G~~hs~alt~---~G~v 200 (423)
T 3mvd_K 127 GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTID-GNKRTPIDLMEGTVCCSIAS--GADHLVILTT---AGKV 200 (423)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTT-BCEEEEEESSTTCCEEEEEE--CSSEEEEEET---TSCE
T ss_pred CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCC-CCCceeeEecCCCcEEEEec--CCCeEEEEec---CCeE
Confidence 468999999999999999999999953 1 111 11122221222457888876 4678888887 8999
Q ss_pred EEEecCC-----------------------CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCc
Q 001978 93 FYTHAKW-----------------------SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKD 149 (987)
Q Consensus 93 ~Y~~~~~-----------------------~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~ 149 (987)
|-+..+. ..++.+.-..+..|..|+=.. ...+++-|++|.||-.-.+...
T Consensus 201 ~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~-------~~~~~~~~~~g~v~~wG~n~~g 273 (423)
T 3mvd_K 201 FTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN-------YCTFMRESQTQVIWATGLNNFK 273 (423)
T ss_dssp EEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEET-------TEEEEEETTTCCEEEEEECTTC
T ss_pred EEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECC-------cEEEEEECCCCeEEEEeCCCCC
Confidence 8876321 133444333455677776551 1246665889999876554320
Q ss_pred -------cccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 150 -------KREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 150 -------~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
..+.....+ .++. ..|..|.- + ....++++...++|.|-
T Consensus 274 qlg~~~~~~~~~~~p~-~~~~--~~v~~ia~------G-~~ht~alt~~G~v~~wG 319 (423)
T 3mvd_K 274 QLAHETKGKEFALTPI-KTEL--KDIRHIAG------G-QHHTVILTTDLKCSVVG 319 (423)
T ss_dssp TTSSCCTTCSEEEEEE-EECC--CSEEEEEE------C-SSEEEEEETTCCEEEEE
T ss_pred cCCCCCCCCceeeeeE-EcCC--CCeEEEEc------c-cCeEEEEeCCCcEEEEE
Confidence 111112221 2221 23554443 2 24556668899999984
No 375
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.33 E-value=16 Score=32.79 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=39.8
Q ss_pred HHHchhhHHHHHHhcCC-----chh--HhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD-----PLQ--RDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~~~--~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+++.+. |.. ...+....|..++..|+|++|...|.+..
T Consensus 37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 92 (148)
T 2dba_A 37 ELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI 92 (148)
T ss_dssp HHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 47788999999988642 322 46788899999999999999999998765
No 376
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=63.23 E-value=42 Score=35.30 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=35.6
Q ss_pred HHHHchhhHHHHHHhcCC----------chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRD----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~----------~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+|...|+|++|++.... +......+...|..+...|+|++|...|.+..
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 103 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 346677888888877542 11234567777888888899999988887765
No 377
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=63.08 E-value=2.2e+02 Score=33.79 Aligned_cols=111 Identities=10% Similarity=0.059 Sum_probs=62.1
Q ss_pred eCCEEEEEecCC-------------eEEEEeCCCCCceeeEcCCCCC-CccceeEEEeCCCCCeEEEEeecCCC-ccEEE
Q 001978 30 GNDVIVLGTSKG-------------WLIRHDFGAGDSYDIDLSAGRP-GEQSIHKVFVDPGGSHCIATIVGSGG-AETFY 94 (987)
Q Consensus 30 ~nn~l~~~~~~g-------------~l~ridl~~~~~~~~~l~~~~~-~~~~i~~i~lDp~G~hlli~~~~~~~-g~~~Y 94 (987)
.++.++++...+ .|++++++....+...+-.... ....+..+..+|.|++++++..++++ .+.|+
T Consensus 184 Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 184 GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV 263 (693)
T ss_dssp TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence 466777777653 4999999322222222211111 12345678889999999888763322 37777
Q ss_pred EecCCC--CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCC----CcEEEEEeccC
Q 001978 95 THAKWS--KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT----GQLHEMAVDEK 148 (987)
Q Consensus 95 ~~~~~~--k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~----G~i~e~~i~~~ 148 (987)
+..... +++.|..-.+.. .++ |.++ .+.|++-|++ +.|+.+.+...
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~-~~~-~~~~------g~~l~~~t~~~~~~~~l~~~d~~~~ 315 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDAD-VSL-VDNK------GSTLYLLTNRDAPNRRLVTVDAANP 315 (693)
T ss_dssp EETTSTTCCCEEEECSSSSC-EEE-EEEE------TTEEEEEECTTCTTCEEEEEETTSC
T ss_pred EECCCCCCceEEEeCCCCce-EEE-Eecc------CCEEEEEECCCCCCCEEEEEeCCCC
Confidence 776544 456665433332 333 3311 2356666543 67888877653
No 378
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=62.89 E-value=18 Score=31.46 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=39.0
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..++..|+|++|+++.+.. .....+....|..++..|+|++|.+.|.+..
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 73 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAI 73 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 3467789999999886531 1224677888999999999999999998875
No 379
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=62.84 E-value=5.3 Score=35.37 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 001978 391 DQVYLVQAEAAFATKDFHRAASFYAKI 417 (987)
Q Consensus 391 ~~V~~~~~~~l~~~g~y~~Aa~~~~~~ 417 (987)
..++...|.-++..|+|++|...|.+.
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~a 53 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANG 53 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555555566666665555554
No 380
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=62.84 E-value=61 Score=33.64 Aligned_cols=109 Identities=7% Similarity=-0.012 Sum_probs=64.1
Q ss_pred HhhcCCCceeEEEEe--CCEEEE-EecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 16 YAAKGRGVITCMSAG--NDVIVL-GTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 16 ~~~~~~~~i~~~~v~--nn~l~~-~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
..+.-.+.++.++.. ++.||. .-.++.|+++|+...-...+++. +..-...|-.++.|. ++|+.. +++..
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~----g~~D~EGIa~~~~g~-~~vs~E--~~~~l 93 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLD----FVKDLETIEYIGDNQ-FVISDE--RDYAI 93 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECS----SCSSEEEEEECSTTE-EEEEET--TTTEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecC----CCCChHHeEEeCCCE-EEEEEC--CCCcE
Confidence 344445679999998 567765 66779999999974445556553 224568888888885 444443 13444
Q ss_pred EEEecCCCC-------ce-ec-cCCCCceEEEEeecCCCCCCCCcceEEEEcCC
Q 001978 93 FYTHAKWSK-------PR-VL-SKLKGLVVNAVAWNRQQITEASTKEIILGTDT 137 (987)
Q Consensus 93 ~Y~~~~~~k-------~k-~L-~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~ 137 (987)
|-++..... .+ .+ ..-++...+.+||++. ++.+.+...+
T Consensus 94 ~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~------~~~L~va~E~ 141 (255)
T 3qqz_A 94 YVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ------DHTFWFFKEK 141 (255)
T ss_dssp EEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT------TTEEEEEEES
T ss_pred EEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCC------CCEEEEEECc
Confidence 443322211 11 11 1124566899999832 3356665444
No 381
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=62.72 E-value=1.8e+02 Score=33.82 Aligned_cols=152 Identities=12% Similarity=0.005 Sum_probs=83.5
Q ss_pred CCE-EEEEe-cCCeEEEEeCC--C-CCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeec-------CCCccEEEEecC
Q 001978 31 NDV-IVLGT-SKGWLIRHDFG--A-GDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVG-------SGGAETFYTHAK 98 (987)
Q Consensus 31 nn~-l~~~~-~~g~l~ridl~--~-~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~-------~~~g~~~Y~~~~ 98 (987)
++. |+++. .++.|+++|+. . .....+.-.........+..+-.+|.|..++.++.. .+....|-++..
T Consensus 90 g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 90 GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 455 55544 36789999985 2 333322111000013567888889999999888761 001355556665
Q ss_pred C------CCceecc-CCCCceEEEEeecCCCCCCCCcceEEEEcCC--------CcEEEEEeccCccccceeeeeeeeCC
Q 001978 99 W------SKPRVLS-KLKGLVVNAVAWNRQQITEASTKEIILGTDT--------GQLHEMAVDEKDKREKYIKLLFELNE 163 (987)
Q Consensus 99 ~------~k~k~L~-klkg~~i~sVaw~~~~~~~~st~~iLiGt~~--------G~i~e~~i~~~~~~e~~~k~v~~l~~ 163 (987)
. .+.+.|. .- ...+.+++|+++ .+.|+.+..+ ..|+...++.. +.....+++..-.
T Consensus 170 ~~~~~~~~~~~~l~~~~-~~~~~~~~~SpD------G~~la~~~~~~~~~~~~~~~i~~~d~~~~-g~~~~~~~l~~~~- 240 (662)
T 3azo_A 170 GSAAADRSAVRELSDDA-HRFVTGPRLSPD------GRQAVWLAWDHPRMPWEGTELKTARVTED-GRFADTRTLLGGP- 240 (662)
T ss_dssp STTTTCGGGSEESSCSC-SSEECCCEECTT------SSEEEEEEECTTCCTTTCEEEEEEEECTT-SCEEEEEEEEEET-
T ss_pred CCccccCCceeEEEecC-CCcccCceECCC------CCEEEEEECCCCCCCCCCcEEEEEEECCC-CcccccEEeCCCC-
Confidence 5 4566665 32 347888999843 2356655533 36888877631 1011234443322
Q ss_pred CCCceeeEEEEeeccCCCceEEEEEEC-CC--eEEEEe
Q 001978 164 LPEAFMGLQMETASLSNGTRYYVMAVT-PT--RLYSFT 198 (987)
Q Consensus 164 ~~~~I~gi~~~~~~~~~~~~~~i~ast-~~--rly~f~ 198 (987)
.+.+.++.|.. +.+ +++++. .. +||.+.
T Consensus 241 -~~~~~~~~~sp-----dg~-l~~~~~~~~~~~l~~~~ 271 (662)
T 3azo_A 241 -EEAIAQAEWAP-----DGS-LIVATDRTGWWNLHRVD 271 (662)
T ss_dssp -TBCEEEEEECT-----TSC-EEEEECTTSSCEEEEEC
T ss_pred -CceEcceEECC-----CCe-EEEEECCCCCeEEEEEE
Confidence 24577777752 224 445454 23 788775
No 382
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=62.63 E-value=10 Score=35.49 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=37.9
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+...+.. ..-..++...|.-++..|+|++|...|.+..
T Consensus 30 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 30 NQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 478889999999886531 1223556778889999999999999998875
No 383
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=62.23 E-value=1.9e+02 Score=34.49 Aligned_cols=119 Identities=6% Similarity=-0.036 Sum_probs=65.5
Q ss_pred eEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC--CCccEEEEecCCC--C-ceeccCCCCceEEE
Q 001978 42 WLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS--GGAETFYTHAKWS--K-PRVLSKLKGLVVNA 115 (987)
Q Consensus 42 ~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~--~~g~~~Y~~~~~~--k-~k~L~klkg~~i~s 115 (987)
.|+++++ .+......-... ......+..+..+|.|+++++.+... ++.+.|++..... + .+.|..-.+. +.+
T Consensus 244 ~v~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~~ 321 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFAT-PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA-QWD 321 (741)
T ss_dssp EEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS-CEE
T ss_pred EEEEEECCCCchhCEEEecc-CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc-eEE
Confidence 4999999 333211121111 11112477888899999999888622 1336777776544 4 5666533332 344
Q ss_pred EeecCCCCCCCCcceEEEEcCC----CcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEE
Q 001978 116 VAWNRQQITEASTKEIILGTDT----GQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 116 Vaw~~~~~~~~st~~iLiGt~~----G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
..|. +.+.|++.|++ +.|+...++... ..++.++ ++.+..+.++.+.
T Consensus 322 ~~~~-------dg~~l~~~s~~~~~~~~l~~~d~~~~~---~~~~~l~--~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 322 FVDG-------VGDQLWFVSGDGAPLKKIVRVDLSGST---PRFDTVV--PESKDNLESVGIA 372 (741)
T ss_dssp EEEE-------ETTEEEEEECTTCTTCEEEEEECSSSS---CEEEEEE--CCCSSEEEEEEEE
T ss_pred EEec-------cCCEEEEEECCCCCCCEEEEEeCCCCc---cccEEEe--cCCCCeEEEEEEE
Confidence 4443 12368887764 458887765421 2355553 3323446666664
No 384
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=61.82 E-value=49 Score=38.30 Aligned_cols=109 Identities=10% Similarity=0.015 Sum_probs=64.2
Q ss_pred eEEEEeCC-EEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC-CCccEEEEecCCCCc
Q 001978 25 TCMSAGND-VIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS-GGAETFYTHAKWSKP 102 (987)
Q Consensus 25 ~~~~v~nn-~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~-~~g~~~Y~~~~~~k~ 102 (987)
.+++-.++ +++.....+.+.++|+...+...+.-. .. ..+..+|.|+.++.++... +.+..|-++....+.
T Consensus 115 ~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-----~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~ 187 (582)
T 3o4h_A 115 LSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-----PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL 187 (582)
T ss_dssp EEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-----SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC
T ss_pred eeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-----CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc
Confidence 34444454 445555566677888822222222211 01 5677889999988777611 115566667666677
Q ss_pred eeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCC--cEEEEEecc
Q 001978 103 RVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTG--QLHEMAVDE 147 (987)
Q Consensus 103 k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G--~i~e~~i~~ 147 (987)
+.|..- ...+.+++|.++ .+.|..+..+| .||...++.
T Consensus 188 ~~l~~~-~~~~~~~~~SpD------G~~l~~~~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 188 RVFDSG-EGSFSSASISPG------MKVTAGLETAREARLVTVDPRD 227 (582)
T ss_dssp EEECCS-SCEEEEEEECTT------SCEEEEEECSSCEEEEEECTTT
T ss_pred eEeecC-CCccccceECCC------CCEEEEccCCCeeEEEEEcCCC
Confidence 777653 346899999943 12455455667 677666554
No 385
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=61.56 E-value=1.6e+02 Score=30.87 Aligned_cols=138 Identities=12% Similarity=0.022 Sum_probs=73.1
Q ss_pred ceeEEEEe--CCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeec-------------
Q 001978 23 VITCMSAG--NDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVG------------- 86 (987)
Q Consensus 23 ~i~~~~v~--nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~------------- 86 (987)
....+++. ++.||++...+.|+++|.....+..+.-..........+.+.+|| .|. +.|+...
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehc
Confidence 35788888 589999987777999998322222221110000113568899999 894 6665431
Q ss_pred --CCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEE-cCCCcEEEEEeccCccccceeeeeeeeCC
Q 001978 87 --SGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILG-TDTGQLHEMAVDEKDKREKYIKLLFELNE 163 (987)
Q Consensus 87 --~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiG-t~~G~i~e~~i~~~~~~e~~~k~v~~l~~ 163 (987)
..+|..|.+.....+++.+.. ....-..|+|+++ .+.+.+. +.++.|+.+.+.... ....+.+.+++
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~d------g~~lyv~d~~~~~I~~~~~~~~~--~~~~~~~~~~~- 229 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSAD------SSFVLVAEFLSHQIVKYWLEGPK--KGTAEVLVKIP- 229 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTT------SSEEEEEEGGGTEEEEEESSSTT--TTCEEEEEECS-
T ss_pred ccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCC------CCEEEEEeCCCCeEEEEECCCCc--CCccceEEeCC-
Confidence 012556666554333332211 0012345677732 1235565 556778887776421 01122222333
Q ss_pred CCCceeeEEEE
Q 001978 164 LPEAFMGLQME 174 (987)
Q Consensus 164 ~~~~I~gi~~~ 174 (987)
+ ..||.+.
T Consensus 230 --g-P~gi~~d 237 (322)
T 2fp8_A 230 --N-PGNIKRN 237 (322)
T ss_dssp --S-EEEEEEC
T ss_pred --C-CCCeEEC
Confidence 4 6788765
No 386
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=61.29 E-value=2.3 Score=44.28 Aligned_cols=33 Identities=15% Similarity=0.374 Sum_probs=28.2
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAHV 883 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~~ 883 (987)
.-.|++|...+.. |+..-.|||+|-+.|+....
T Consensus 181 el~CPIcl~~f~D------------------PVts~~CGHsFcR~cI~~~~ 213 (267)
T 3htk_C 181 ELTCPITCKPYEA------------------PLISRKCNHVFDRDGIQNYL 213 (267)
T ss_dssp CSBCTTTSSBCSS------------------EEEESSSCCEEEHHHHHHHS
T ss_pred eeECcCccCcccC------------------CeeeCCCCCcccHHHHHHHH
Confidence 4589999998876 77667999999999998875
No 387
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=61.26 E-value=15 Score=31.61 Aligned_cols=49 Identities=16% Similarity=0.357 Sum_probs=38.0
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+...|+|++|+++.+.. .....+....|..++..|+|++|...|.+..
T Consensus 18 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 467789999999886531 1224567788999999999999999988765
No 388
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=61.16 E-value=62 Score=36.62 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=46.3
Q ss_pred hhHHHHHHhcC----CchhHhHHHHHHHHHHHhcCCH-HHHHHHHHhhc--CC---CChHHHHHHhcCcChHHHHHHHHH
Q 001978 375 KEYAAALANCR----DPLQRDQVYLVQAEAAFATKDF-HRAASFYAKIN--YI---LSFEEITLKFISVSEQDALRTFLL 444 (987)
Q Consensus 375 ~~fe~Al~~~~----~~~~~~~V~~~~~~~l~~~g~y-~~Aa~~~~~~~--~~---~~~E~v~lkFl~~~~~~~L~~YL~ 444 (987)
+.+++|++..+ .+.....++...|..++..|+| ++|.+.|.+.. +. ..|-.....+...++.+.-..++.
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45666666643 2334567888999999999999 99999998875 11 122233334444555554444555
Q ss_pred HHhh
Q 001978 445 RKLD 448 (987)
Q Consensus 445 ~kl~ 448 (987)
.-+.
T Consensus 162 ~al~ 165 (474)
T 4abn_A 162 GALT 165 (474)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 4444
No 389
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=60.88 E-value=6.4 Score=35.75 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=28.0
Q ss_pred HHHchhhHHHHHHhcCC-----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++++|+|++|++.-+. |. -..++...|.-++..|+|++|.+.|.+..
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 35666667766666432 21 12345556666667777777766665553
No 390
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=60.83 E-value=89 Score=32.38 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=24.0
Q ss_pred hHHHHHHhcCCchhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 376 EYAAALANCRDPLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 376 ~fe~Al~~~~~~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
+|++|+++. .+.|..+...|+|++|+..|.+..
T Consensus 32 ~~~~A~~~~----------~~a~~~~~~~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 32 KFEEAADLC----------VQAATIYRLRKELNLAGDSFLKAA 64 (292)
T ss_dssp HHHHHHHHH----------HHHHHHHHHTTCTHHHHHHHHHHH
T ss_pred cHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 477777763 334666777899999998888765
No 391
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=60.66 E-value=69 Score=35.08 Aligned_cols=102 Identities=12% Similarity=-0.030 Sum_probs=59.2
Q ss_pred CCEEEEEecCCeEEEEeC--CCCCceeeEcCCCCCCccceeEEEeCC-CCCeEEEEeecCCCc----cEEEEecCCCCce
Q 001978 31 NDVIVLGTSKGWLIRHDF--GAGDSYDIDLSAGRPGEQSIHKVFVDP-GGSHCIATIVGSGGA----ETFYTHAKWSKPR 103 (987)
Q Consensus 31 nn~l~~~~~~g~l~ridl--~~~~~~~~~l~~~~~~~~~i~~i~lDp-~G~hlli~~~~~~~g----~~~Y~~~~~~k~k 103 (987)
.+.|++|+..| +++++- ....-..+... .....|+.|.+|| ...++.+.+. .| -.|+....-..-+
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~---~~~~~v~~i~~dp~~~~~l~~g~~---~g~~g~gl~~s~D~G~tW~ 94 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPV---FLGHTIHHIVQDPREPERMLMAAR---TGHLGPTVFRSDDGGGNWT 94 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEE---STTSEEEEEEECSSSTTCEEEEEE---C--CCEEEEEESSTTSCCE
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCcc---CCCCceEEEEECCCCCCeEEEEec---CCCCCccEEEeCCCCCCce
Confidence 56899999998 555544 22333333211 1136799999999 3557888877 45 5666543222112
Q ss_pred ecc---CC----------CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEE
Q 001978 104 VLS---KL----------KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (987)
Q Consensus 104 ~L~---kl----------kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (987)
.+. .+ ....|.+|+.++.. ..+.+.+||..|-||..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~----~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 95 EATRPPAFNKAPEGETGRVVDHVFWLTPGHAS----EPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp ECSBCCCCCCCC----CCCCCEEEEEEECCTT----STTCEEEEEETTEEEEE
T ss_pred ECCccccCCCcccccccccccceeEEEeCCCC----CCCEEEEEecCCcEEEE
Confidence 211 11 11368889988421 13479999988777764
No 392
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=60.44 E-value=70 Score=36.97 Aligned_cols=138 Identities=10% Similarity=0.037 Sum_probs=78.6
Q ss_pred EEeCCEEEEEecC----CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCc--cEEEEecCCCC
Q 001978 28 SAGNDVIVLGTSK----GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGA--ETFYTHAKWSK 101 (987)
Q Consensus 28 ~v~nn~l~~~~~~----g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g--~~~Y~~~~~~k 101 (987)
.-.++.++.+... +.|+++|+...+...+ .. ....+..+-..|.|+.++.+.. +| ..|-++....+
T Consensus 158 spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l--~~---~~~~~~~~~~SpDG~~l~~~~~---~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 158 DIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF--DS---GEGSFSSASISPGMKVTAGLET---AREARLVTVDPRDGS 229 (582)
T ss_dssp EEETTEEEEEEEEETTEEEEEEEETTTCCCEEE--CC---SSCEEEEEEECTTSCEEEEEEC---SSCEEEEEECTTTCC
T ss_pred CCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEe--ec---CCCccccceECCCCCEEEEccC---CCeeEEEEEcCCCCc
Confidence 3456677777665 7899999933333322 21 1356788888999999884443 55 45555555555
Q ss_pred ceeccCCCCceEEEEe--------ecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEE
Q 001978 102 PRVLSKLKGLVVNAVA--------WNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQM 173 (987)
Q Consensus 102 ~k~L~klkg~~i~sVa--------w~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~ 173 (987)
.+.+.. ....+.+++ |.++ ..-+..++.+|.+....+ +. ... .+. +.|.++.+
T Consensus 230 ~~~~~~-~~~~~~~~~~~~~~~~~~spd------g~~~~~~~~~g~~~l~~~-g~------~~~---~~~--~~v~~~~~ 290 (582)
T 3o4h_A 230 VEDLEL-PSKDFSSYRPTAITWLGYLPD------GRLAVVARREGRSAVFID-GE------RVE---APQ--GNHGRVVL 290 (582)
T ss_dssp EEECCC-SCSHHHHHCCSEEEEEEECTT------SCEEEEEEETTEEEEEET-TE------EEC---CCS--SEEEEEEE
T ss_pred EEEccC-CCcChhhhhhccccceeEcCC------CcEEEEEEcCCcEEEEEE-CC------eec---cCC--CceEEEEe
Confidence 554332 234566666 9843 123455667787666655 21 111 221 45777766
Q ss_pred EeeccCCCceEEEEEEC---CCeEEEEe
Q 001978 174 ETASLSNGTRYYVMAVT---PTRLYSFT 198 (987)
Q Consensus 174 ~~~~~~~~~~~~i~ast---~~rly~f~ 198 (987)
. +.++++.+++ +.++|.+.
T Consensus 291 s------dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 291 W------RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp E------TTEEEEEEEETTEEEEEEEET
T ss_pred c------CCEEEEEEcCCCCCCeEEEEc
Confidence 4 1245555554 35677664
No 393
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=60.33 E-value=89 Score=34.14 Aligned_cols=114 Identities=12% Similarity=0.208 Sum_probs=67.3
Q ss_pred CceeEEEEe---CCEEEEEecCC----eEEEEeCCCCCceeeEcCC--CCC-------CccceeEEEeCCC--CCeEEEE
Q 001978 22 GVITCMSAG---NDVIVLGTSKG----WLIRHDFGAGDSYDIDLSA--GRP-------GEQSIHKVFVDPG--GSHCIAT 83 (987)
Q Consensus 22 ~~i~~~~v~---nn~l~~~~~~g----~l~ridl~~~~~~~~~l~~--~~~-------~~~~i~~i~lDp~--G~hlli~ 83 (987)
..|.+|++. ++.||+|+..| .|+|.+-....-..+..+. ... ....|..|.+||. ..++.+.
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g 134 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAG 134 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEE
Confidence 468999997 68999999998 8998754333323333221 000 0125777888984 5677877
Q ss_pred eecCCCccEEEEec---CCCCceec---c------------CCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEE
Q 001978 84 IVGSGGAETFYTHA---KWSKPRVL---S------------KLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEM 143 (987)
Q Consensus 84 ~~~~~~g~~~Y~~~---~~~k~k~L---~------------klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~ 143 (987)
+. .|-.|.... .+.+...+ . -..+..|.+|+.++. +.+.+.+|+..|-||..
T Consensus 135 ~~---~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~-----~~~~l~vg~~~ggl~~s 204 (394)
T 3b7f_A 135 TS---PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPR-----DPKHLYIGMSSGGVFES 204 (394)
T ss_dssp EE---TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTT-----CTTCEEEEEETBEEEEE
T ss_pred ec---CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCC-----CCCEEEEEECCCCEEEE
Confidence 76 455655542 22222111 0 012357889998732 23479999887767764
No 394
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=60.09 E-value=7.1 Score=35.45 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=40.3
Q ss_pred HHHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..|+..|+|++|++.++... .-...+...|.-++..|+|++|.+.|.+..
T Consensus 55 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 55 ACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35788899999999876422 224568889999999999999999998875
No 395
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=59.51 E-value=0.81 Score=31.15 Aligned_cols=29 Identities=17% Similarity=0.522 Sum_probs=20.5
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCL 879 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL 879 (987)
+.+|..|++.+.... + +-.-|..||..|+
T Consensus 3 ~~~C~~C~k~Vy~~E---k---------------~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE---K---------------VNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGG---C---------------CCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecce---e---------------EEECCeEecccCC
Confidence 568999999987621 2 1235788999884
No 396
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=59.20 E-value=1.4 Score=37.20 Aligned_cols=29 Identities=28% Similarity=0.572 Sum_probs=21.9
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCCh-hHHHhHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHA-FHAQCLI 880 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~-fH~~CL~ 880 (987)
...|.+|..... ..+..||||. |-..|+.
T Consensus 18 ~~~C~IC~~~~~-------------------~~v~~pCgH~~~C~~C~~ 47 (79)
T 2yho_A 18 AMLCMVCCEEEI-------------------NSTFCPCGHTVCCESCAA 47 (79)
T ss_dssp HTBCTTTSSSBC-------------------CEEEETTCBCCBCHHHHT
T ss_pred CCEeEEeCcccC-------------------cEEEECCCCHHHHHHHHH
Confidence 457999975422 4566799999 8899985
No 397
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=59.05 E-value=73 Score=36.51 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=37.9
Q ss_pred HHchhhHHHHHHhcCC----------ch--hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 371 YLDMKEYAAALANCRD----------PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~----------~~--~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
+..+|+|++|+.+++. +. ....++...|.-+..+|+|++|..+|.++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4467999999888642 12 345677788889999999999999999887
No 398
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=58.85 E-value=8.7 Score=33.64 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=7.0
Q ss_pred cCCHHHHHHHHHhh
Q 001978 404 TKDFHRAASFYAKI 417 (987)
Q Consensus 404 ~g~y~~Aa~~~~~~ 417 (987)
.|+|++|...|.+.
T Consensus 51 ~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 51 KGDYNKCRELCEKA 64 (131)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHH
Confidence 45555555554443
No 399
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=58.28 E-value=43 Score=38.80 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=20.7
Q ss_pred hhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 375 KEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 375 ~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
|++++|++..+... .-...+...|..++..|+|++|.+.|.+..
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 50 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL 50 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56666766655311 123556677777777788888877777765
No 400
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=57.73 E-value=8.3 Score=34.32 Aligned_cols=50 Identities=18% Similarity=0.357 Sum_probs=40.0
Q ss_pred HHHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..|+..|+|++|+..++... .-...+...|.-++..|+|++|...|.+..
T Consensus 46 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 46 AALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 34778899999999876321 224678889999999999999999998775
No 401
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=57.68 E-value=2.3 Score=34.22 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=21.9
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEE--cCCCh-hHHHhHHHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVF--PCGHA-FHAQCLIAH 882 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvF--pCgH~-fH~~CL~~~ 882 (987)
.+..|.+|...... .++. ||||. |=.+|+...
T Consensus 7 ~~~~C~IC~~~~~~-------------------~~~~~~pCgH~~~C~~C~~~~ 41 (64)
T 2vje_A 7 AIEPCVICQGRPKN-------------------GCIVHGKTGHLMACFTCAKKL 41 (64)
T ss_dssp GGSCCTTTSSSCSC-------------------EEEEETTEEEEEECHHHHHHH
T ss_pred CcCCCCcCCCCCCC-------------------EEEECCCCCChhhHHHHHHHH
Confidence 45679999754332 2333 99999 569998654
No 402
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=57.45 E-value=2.5 Score=35.54 Aligned_cols=33 Identities=36% Similarity=0.727 Sum_probs=23.3
Q ss_pred ccccccccccchhhhhcccccccccccCCCCCCCCEEEEc---CCChhHHHhHHHH
Q 001978 830 IDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFP---CGHAFHAQCLIAH 882 (987)
Q Consensus 830 i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFp---CgH~fH~~CL~~~ 882 (987)
|..+..|.+|..-=.. ..|| |+-+||..||.+.
T Consensus 12 ~~~D~~C~VC~~~t~~--------------------~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAE--------------------SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCCSS--------------------CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcccccccc--------------------ceeccccccccccHhhcccc
Confidence 4457899999842111 2456 7899999999864
No 403
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=57.36 E-value=24 Score=36.09 Aligned_cols=101 Identities=10% Similarity=0.097 Sum_probs=60.5
Q ss_pred CceeEEEEe-CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccce--------eEEEeCCCCCeEEEEeecCCCcc
Q 001978 22 GVITCMSAG-NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSI--------HKVFVDPGGSHCIATIVGSGGAE 91 (987)
Q Consensus 22 ~~i~~~~v~-nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i--------~~i~lDp~G~hlli~~~~~~~g~ 91 (987)
+++++|+.+ |+.||.+ .+|.||++|. ......-+.. ...| ..+|+||+|...++ + +|.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s------~t~IG~~Gw~~F~a~~fD~~G~LYav-~----dG~ 108 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGR------AKKIGNGGWNQFQFLFFDPNGYLYAV-S----KDK 108 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHH------CEEEECSCGGGCSEEEECTTSCEEEE-E----TTE
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCccccccc------ccEecccccccceEEEECCCCCEEEe-C----CCE
Confidence 468899999 5677777 9999999997 2111111111 1234 67999999987777 4 598
Q ss_pred EEEEecCCC-CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEE
Q 001978 92 TFYTHAKWS-KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMA 144 (987)
Q Consensus 92 ~~Y~~~~~~-k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~ 144 (987)
.|-++...+ ...-|. .+-.|-.=.|.. -+.|..+.+|.||-+.
T Consensus 109 iyr~~pP~~~~~~Wl~--~a~~vg~~gw~~--------~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 109 LYKASPPQSDTDNWIA--RATEVGSGGWSG--------FKFLFFHPNGYLYAVH 152 (236)
T ss_dssp EEEESCCCSTTCCHHH--HSEEEECSSGGG--------EEEEEECTTSCEEEEE
T ss_pred EEEeCCCcCCCCceec--cccEeccCCCCc--------eEEEEECCCceEEEEe
Confidence 887754221 111122 122233334541 2677777788888766
No 404
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=57.06 E-value=7.8 Score=33.96 Aligned_cols=24 Identities=8% Similarity=-0.069 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhh
Q 001978 394 YLVQAEAAFATKDFHRAASFYAKI 417 (987)
Q Consensus 394 ~~~~~~~l~~~g~y~~Aa~~~~~~ 417 (987)
+...|..+...|+|++|...|.+.
T Consensus 56 ~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 56 WKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444455555554444433
No 405
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=57.00 E-value=1.5e+02 Score=34.52 Aligned_cols=150 Identities=15% Similarity=0.130 Sum_probs=80.0
Q ss_pred CCceeEEEEeCCEEEEEec----CCeEEEEe-CCCCCceeeEcCCCCCCcccee---------EE-Ee-CCCCCe-EEEE
Q 001978 21 RGVITCMSAGNDVIVLGTS----KGWLIRHD-FGAGDSYDIDLSAGRPGEQSIH---------KV-FV-DPGGSH-CIAT 83 (987)
Q Consensus 21 ~~~i~~~~v~nn~l~~~~~----~g~l~rid-l~~~~~~~~~l~~~~~~~~~i~---------~i-~l-Dp~G~h-lli~ 83 (987)
...+.+++++++.+++... .|..-.+. .......++..+ ...+. .. |. .|.|.. ++.+
T Consensus 23 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 23 SGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPA-----PWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp CSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCT-----TCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred CCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCC-----CccccccccccCCccceeeeecCCCeEEEEE
Confidence 3568999999998888776 34433333 222222222111 11222 23 66 499998 6655
Q ss_pred eecCCCccEEEEecC--C-CCceeccCC----CCceEEEEeecCCCCCCCCcceEEEEcCC----------CcEEEEEec
Q 001978 84 IVGSGGAETFYTHAK--W-SKPRVLSKL----KGLVVNAVAWNRQQITEASTKEIILGTDT----------GQLHEMAVD 146 (987)
Q Consensus 84 ~~~~~~g~~~Y~~~~--~-~k~k~L~kl----kg~~i~sVaw~~~~~~~~st~~iLiGt~~----------G~i~e~~i~ 146 (987)
.. .++..|-+... . .+.+.|... .+..+.+++|+++ .+.|+.++.+ ..|+...++
T Consensus 98 ~~--~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spD------g~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 98 HF--GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPE------RGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp BT--TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETT------TTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred EC--CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCC------CCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 43 14556556554 2 566777653 2467899999943 2256666654 467766665
Q ss_pred cCcccc-ceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEEC
Q 001978 147 EKDKRE-KYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT 190 (987)
Q Consensus 147 ~~~~~e-~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast 190 (987)
.....+ ...+++.. ..+..+.++.|. .+.+++++++.
T Consensus 170 ~~~~~~~~~~~~l~~--~~~~~~~~~~~S-----pDG~~la~~~~ 207 (662)
T 3azo_A 170 GSAAADRSAVRELSD--DAHRFVTGPRLS-----PDGRQAVWLAW 207 (662)
T ss_dssp STTTTCGGGSEESSC--SCSSEECCCEEC-----TTSSEEEEEEE
T ss_pred CCccccCCceeEEEe--cCCCcccCceEC-----CCCCEEEEEEC
Confidence 410000 11233320 112446666664 23367777663
No 406
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=57.00 E-value=12 Score=33.39 Aligned_cols=50 Identities=12% Similarity=-0.006 Sum_probs=39.7
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..++..|+|++|+.+.+.. ..-..++...|.-++..|+|++|...|.+..
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 70 (137)
T 3q49_B 17 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 70 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3578889999999886531 1224678888999999999999999998875
No 407
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=56.81 E-value=9.5 Score=34.24 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=39.8
Q ss_pred HHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+++.|+|++|+...+... .-...+...|.-++..|++++|...|.+..
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 78 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4889999999999876321 234667788999999999999999998875
No 408
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.93 E-value=1.1e+02 Score=33.10 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=35.5
Q ss_pred HHHHchhhHHHHHHhcCC-----ch----------------hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRD-----PL----------------QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~-----~~----------------~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
+-+.+.|+|++|++..+. +. ........-|.-++..|+|++|.+.|.+..
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 447888999999887531 10 123446677888888999999998887765
No 409
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=55.79 E-value=1.4e+02 Score=33.08 Aligned_cols=152 Identities=11% Similarity=0.086 Sum_probs=83.6
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEE------eC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEE
Q 001978 23 VITCMSAGNDVIVLGTSKGWLIRH------DF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYT 95 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~g~l~ri------dl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~ 95 (987)
.+..+++..+..++.+.+|.||-| -| .+..+.....|........|.+|.. .+.|.++-+. +|.+|-+
T Consensus 25 ~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~--G~~h~~~l~~---~G~v~~w 99 (423)
T 3mvd_K 25 KRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISA--GGMHNLVLTK---SGDIYSF 99 (423)
T ss_dssp ----CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEE--CSSEEEEEET---TSCEEEE
T ss_pred eeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEee--CCCeEEEEeC---CCeEEEe
Confidence 456788888888999999999999 23 2222222222222111234655554 6889888888 8999988
Q ss_pred ecCC--------------CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEe--ccCc-----cccce
Q 001978 96 HAKW--------------SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAV--DEKD-----KREKY 154 (987)
Q Consensus 96 ~~~~--------------~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i--~~~~-----~~e~~ 154 (987)
..+. ..+..+. +. ..|..|+=... ..++=|++|.||-.-- +... .....
T Consensus 100 G~n~~GqLG~~~~~~~~~~~P~~v~-~~-~~i~~va~G~~--------hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~ 169 (423)
T 3mvd_K 100 GCNDEGALGRDTSEDGSESKPDLID-LP-GKALCISAGDS--------HSACLLEDGRVFAWGSFRDSHGNMGLTIDGNK 169 (423)
T ss_dssp ECCSSSTTCSCCCSTTSSSSCEECC-CS-SCEEEEEECSS--------EEEEEETTSCEEEEECEECSSSEEESBTTBCE
T ss_pred ECCCCcCCCCCCcCCccccCCeEEc-CC-CCEEEEEcCcC--------eEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCC
Confidence 6422 2344443 22 25666665411 3344488999997654 2110 01111
Q ss_pred eeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 155 IKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 155 ~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
...+ .+.. ..+|..|..- ....++++...++|.|-
T Consensus 170 ~~p~-~~~~-~~~i~~va~G-------~~hs~alt~~G~v~~wG 204 (423)
T 3mvd_K 170 RTPI-DLME-GTVCCSIASG-------ADHLVILTTAGKVFTVG 204 (423)
T ss_dssp EEEE-ESST-TCCEEEEEEC-------SSEEEEEETTSCEEEEE
T ss_pred ceee-EecC-CCcEEEEecC-------CCeEEEEecCCeEEEee
Confidence 1222 2221 1346655542 24566668899999994
No 410
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=55.75 E-value=2e+02 Score=30.35 Aligned_cols=50 Identities=20% Similarity=0.020 Sum_probs=34.7
Q ss_pred HHHHchhhHHHHHHhcCCc----------hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDP----------LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----------~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..+...|+|++|+.+.+.. ......+...|..++..|+|++|...|.+..
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 120 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 120 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3466778888888776421 1123345677888888999999988887764
No 411
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=55.68 E-value=9.2 Score=33.75 Aligned_cols=50 Identities=28% Similarity=0.371 Sum_probs=39.7
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..++..|+|++|+++++.. .....+....|..++..|+|++|.+.|.+..
T Consensus 58 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 58 ACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3577889999999987632 1234678888999999999999999988765
No 412
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=55.40 E-value=2.6e+02 Score=31.37 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=71.1
Q ss_pred ceeEEEEeCCEEEEEecCCeEEEEeC-CCCCc-----eee----EcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 23 VITCMSAGNDVIVLGTSKGWLIRHDF-GAGDS-----YDI----DLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~g~l~ridl-~~~~~-----~~~----~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
.|+.+++..+..++.+.+|.||-|=. ...+. ... ..|... ....|.+|.. .+.|.++-+. +|.+
T Consensus 205 ~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~-~~~~v~~Ia~--G~~hs~alt~---~G~v 278 (473)
T 3of7_A 205 NIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF-GLRHVKYIAS--GENHCFALTK---DNKL 278 (473)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEEC-SCCSEEEEEE--CSSEEEEEET---TSCE
T ss_pred CEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceec-CCcceEEEec--CCCeEEEEec---CCCE
Confidence 49999999999999999999999944 11111 111 111111 1246777665 5778888888 8999
Q ss_pred EEEecCC----------------CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEec
Q 001978 93 FYTHAKW----------------SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (987)
Q Consensus 93 ~Y~~~~~----------------~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (987)
|-+..+. ..++.+.-+.+..|..|+=... ..+++ |++|.||-.--.
T Consensus 279 ~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~-------hs~~l-t~~G~v~~wG~n 340 (473)
T 3of7_A 279 VSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEH-------HSLIL-SQDGDLYSCGRL 340 (473)
T ss_dssp EEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSS-------EEEEE-ETTSCEEEEEEC
T ss_pred EEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCC-------eEEEE-eCCCeEEEEECC
Confidence 8886422 1345565566677888876521 13444 889999986553
No 413
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=55.39 E-value=8.6 Score=36.15 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=38.5
Q ss_pred HHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.|+..|+|++|+..+.... .-...+...|.-++..|+|++|...|.+..
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 4677899999999886421 224567888999999999999999988775
No 414
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=55.16 E-value=14 Score=32.49 Aligned_cols=50 Identities=16% Similarity=0.227 Sum_probs=39.9
Q ss_pred HHHHchhhHHHHHHhcCC-----ch--hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRD-----PL--QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~-----~~--~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..++..|+|++|+...+. |. ....++...|.-++..|+|++|...|.+..
T Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 47 ESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 347888999999988652 32 236778889999999999999999887764
No 415
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=55.03 E-value=2.9e+02 Score=31.69 Aligned_cols=101 Identities=16% Similarity=0.018 Sum_probs=65.0
Q ss_pred CCEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEec--CCCC-ceecc
Q 001978 31 NDVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHA--KWSK-PRVLS 106 (987)
Q Consensus 31 nn~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~--~~~k-~k~L~ 106 (987)
+.+++.+..+|+|..||. ....+..++.. ..++.+-++|.|++++++.. ++...-+.. ...+ .+.+.
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g------~~~~~v~~spdg~~l~v~~~---d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTG------YAVHISRMSASGRYLLVIGR---DARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECS------TTEEEEEECTTSCEEEEEET---TSEEEEEETTSSSCEEEEEEE
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecC------cccceEEECCCCCEEEEECC---CCeEEEEECcCCCCcEEEEEe
Confidence 445555567789999999 55445556543 23788989999999999987 677777776 3332 22333
Q ss_pred CCCCceEEEEeecCCCCCCCCcceEEEEcC-CCcEEEEE
Q 001978 107 KLKGLVVNAVAWNRQQITEASTKEIILGTD-TGQLHEMA 144 (987)
Q Consensus 107 klkg~~i~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~ 144 (987)
-|....+|+|++... .+.+.+.+|.. ++.|....
T Consensus 220 --~g~~p~~va~sp~~~--~dg~~l~v~~~~~~~v~v~D 254 (543)
T 1nir_A 220 --IGIEARSVESSKFKG--YEDRYTIAGAYWPPQFAIMD 254 (543)
T ss_dssp --CCSEEEEEEECCSTT--CTTTEEEEEEEESSEEEEEE
T ss_pred --cCCCcceEEeCCCcC--CCCCEEEEEEccCCeEEEEe
Confidence 356789999984100 01235666664 57665543
No 416
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=54.77 E-value=1.3e+02 Score=33.31 Aligned_cols=157 Identities=11% Similarity=0.041 Sum_probs=89.2
Q ss_pred EEEEeC--CEEEEEe----------cCCeEEEEeC-CCCCceeeEcCCC-C-CCccceeEEEeCCCCCeEEEEeecCCCc
Q 001978 26 CMSAGN--DVIVLGT----------SKGWLIRHDF-GAGDSYDIDLSAG-R-PGEQSIHKVFVDPGGSHCIATIVGSGGA 90 (987)
Q Consensus 26 ~~~v~n--n~l~~~~----------~~g~l~ridl-~~~~~~~~~l~~~-~-~~~~~i~~i~lDp~G~hlli~~~~~~~g 90 (987)
+++++. +.+|++- .++.|..||. ....+.+|++|.. + ........+-++|.|+++.|+.. ..++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~-~~~~ 160 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF-SPAP 160 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC-SSSC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEc-CCCC
Confidence 477775 4777775 3578999999 6666788888741 1 01134578999999999999853 1135
Q ss_pred cEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCcee-
Q 001978 91 ETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFM- 169 (987)
Q Consensus 91 ~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~- 169 (987)
.+.-+.....++..--.+.|+ ..+.+. ..+.++..+.+|.+....+....+.......++. ++ ..|+.
T Consensus 161 ~VsVID~~t~~vv~tI~v~g~----~~~~P~-----g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~-~~-~~~~~~ 229 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPDC----YHIFPT-----APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-PE-DEFLIN 229 (386)
T ss_dssp EEEEEETTTTEEEEEEECCSE----EEEEEE-----ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-CT-TSCBCS
T ss_pred eEEEEECCCCcEEEEEECCCc----ceeecC-----CCceeEEECCCCCEEEEECCCCCeEEEeecceec-cc-cccccc
Confidence 666777766543221123443 222211 2347888889999998888653221100011121 11 12232
Q ss_pred eEEEEeeccCCCceEEEEEECCCeEEEEec
Q 001978 170 GLQMETASLSNGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 170 gi~~~~~~~~~~~~~~i~ast~~rly~f~g 199 (987)
...|.. ..+.++|+|...++|.+..
T Consensus 230 ~~~~~~-----~dG~~~~vs~~g~V~v~d~ 254 (386)
T 3sjl_D 230 HPAYSQ-----KAGRLVWPTYTGKIHQIDL 254 (386)
T ss_dssp CCEEET-----TTTEEEEEBTTSEEEEEEC
T ss_pred cceeEc-----CCCcEEEEeCCCEEEEEEC
Confidence 123321 1134556777888998864
No 417
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=54.70 E-value=33 Score=29.59 Aligned_cols=49 Identities=16% Similarity=0.359 Sum_probs=37.6
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+.+.+.. .....+....|..++..|++++|...|.+..
T Consensus 10 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 62 (136)
T 2fo7_A 10 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62 (136)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 477889999999886531 1223556678899999999999999998764
No 418
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=54.68 E-value=29 Score=42.09 Aligned_cols=44 Identities=7% Similarity=0.018 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHH
Q 001978 614 THEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQC 658 (987)
Q Consensus 614 ~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~ 658 (987)
.+.++.+++..+.-.+. ....|+.+-.+|.+.++-++-+..+++
T Consensus 93 ~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 93 VQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566666666654432 455555566666665444444444444
No 419
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=54.07 E-value=2.5e+02 Score=30.69 Aligned_cols=49 Identities=12% Similarity=0.003 Sum_probs=36.6
Q ss_pred HHHchhhHHHHHHhcCCch-------------hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL-------------QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~-------------~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
++..+|+|++|++..+... .....+...|.-++..|+|++|...|.+..
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4677899999998864211 122345678999999999999999988764
No 420
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=53.89 E-value=11 Score=32.22 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=39.8
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..++..|+|++|+...+.. .....+....|..++..|+|++|.+.|.+..
T Consensus 46 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 46 AAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3577889999999987632 1234677888999999999999999998875
No 421
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=53.39 E-value=10 Score=35.71 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=40.3
Q ss_pred HHHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..|+..|+|++|+..++... .-..++...|.-++..|+|++|.+.|.+..
T Consensus 53 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 53 AAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 35788899999999876421 224678889999999999999999998875
No 422
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=53.37 E-value=25 Score=42.15 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=18.1
Q ss_pred HHHHHHHhcccHHHHHHHHhCC
Q 001978 539 IVVHHYIQQGEAKKALQMLRKP 560 (987)
Q Consensus 539 ~ll~~yi~~~~~~~AL~~l~~~ 560 (987)
.+...|...|+|++|++.+.+.
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHcCCHHHHHHHHHhh
Confidence 3566788999999999999874
No 423
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=52.95 E-value=10 Score=35.97 Aligned_cols=50 Identities=8% Similarity=0.065 Sum_probs=40.2
Q ss_pred HHHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..|...|+|++|+...+... .-..++...|.-++..|+|++|...|.+..
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45778899999999876321 223577888999999999999999998875
No 424
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=52.92 E-value=3.5e+02 Score=31.98 Aligned_cols=161 Identities=14% Similarity=0.159 Sum_probs=89.2
Q ss_pred ceeEEEEeCCEEEEEecC-----CeEEEEeC-CCCCceeeEcCC-CCCCccceeEEEeCCCCCeEEEEeecCCCc--cEE
Q 001978 23 VITCMSAGNDVIVLGTSK-----GWLIRHDF-GAGDSYDIDLSA-GRPGEQSIHKVFVDPGGSHCIATIVGSGGA--ETF 93 (987)
Q Consensus 23 ~i~~~~v~nn~l~~~~~~-----g~l~ridl-~~~~~~~~~l~~-~~~~~~~i~~i~lDp~G~hlli~~~~~~~g--~~~ 93 (987)
.+++..-.++.+++.... +.|+|.|. .+....-++... ...+...+..+-..|.|+.++.+++.+|+. ..+
T Consensus 75 ~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~ 154 (710)
T 2xdw_A 75 KYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIK 154 (710)
T ss_dssp EECCCEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEE
T ss_pred cCCCCEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEE
Confidence 345555677777776633 37899998 443211111111 111223578888899999998887632211 444
Q ss_pred EEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCc----------------EEEEEeccCccccceeee
Q 001978 94 YTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQ----------------LHEMAVDEKDKREKYIKL 157 (987)
Q Consensus 94 Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~----------------i~e~~i~~~~~~e~~~k~ 157 (987)
-++....+...+. +.+..+.+++|.++ .+.|+.++.++. ||...+..+.. .-+.
T Consensus 155 v~d~~tg~~~~~~-~~~~~~~~~~wspD------g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~---~~~~ 224 (710)
T 2xdw_A 155 FMKVDGAKELPDV-LERVKFSCMAWTHD------GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS---EDIL 224 (710)
T ss_dssp EEETTTTEEEEEE-EEEECSCCEEECTT------SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG---GCEE
T ss_pred EEECCCCCCCccc-ccCcccceEEEEeC------CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc---cceE
Confidence 5555554444332 22334678999843 236888776654 77777654311 1134
Q ss_pred eeeeCCCCCceeeEEEEeeccCCCceEEEEEEC-----CCeEEEEe
Q 001978 158 LFELNELPEAFMGLQMETASLSNGTRYYVMAVT-----PTRLYSFT 198 (987)
Q Consensus 158 v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast-----~~rly~f~ 198 (987)
++..++.+..+.++.|. .+.+++++.+. ...+|.+.
T Consensus 225 v~~~~~~~~~~~~~~~S-----pDg~~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 225 CAEFPDEPKWMGGAELS-----DDGRYVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp EECCTTCTTCEEEEEEC-----TTSCEEEEEEECSSSSCCEEEEEE
T ss_pred EeccCCCCeEEEEEEEc-----CCCCEEEEEEEccCCCccEEEEEE
Confidence 45554323446677774 23367776653 45677553
No 425
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=52.71 E-value=15 Score=32.08 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhh
Q 001978 394 YLVQAEAAFATKDFHRAASFYAKI 417 (987)
Q Consensus 394 ~~~~~~~l~~~g~y~~Aa~~~~~~ 417 (987)
+...|..++..|+|++|...|.+.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a 30 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKA 30 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344445555555555555555443
No 426
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=52.12 E-value=12 Score=32.68 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=39.6
Q ss_pred HHHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..+...|+|++|++..+... ....+....|..++..|+|++|...|.+..
T Consensus 54 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 54 AAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35778899999999876311 224678889999999999999999998765
No 427
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=51.88 E-value=24 Score=32.44 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=38.8
Q ss_pred HHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+...+.. ..-..++...|..++..|+|++|...|.+..
T Consensus 22 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 74 (166)
T 1a17_A 22 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 74 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 477889999999887531 1224677788999999999999999998875
No 428
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=51.81 E-value=2.7e+02 Score=30.48 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=47.6
Q ss_pred CceeEEEEeCCEEEEEecCCeEEEEeC--CC-------CCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 22 GVITCMSAGNDVIVLGTSKGWLIRHDF--GA-------GDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~g~l~ridl--~~-------~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
..|..+++..+..++.+.+|.||-|-. +. +.......|..-....+|.+|.. ...|.++-++ +|.+
T Consensus 111 ~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~--G~~hs~alt~---~G~v 185 (413)
T 1a12_A 111 EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS--GNDHLVMLTA---DGDL 185 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEE--CSSEEEEEET---TSCE
T ss_pred CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEe--cCceEEEEcC---CCCE
Confidence 479999999999999999999999953 11 11111111211112356777766 5678888888 8999
Q ss_pred EEEec
Q 001978 93 FYTHA 97 (987)
Q Consensus 93 ~Y~~~ 97 (987)
|-+..
T Consensus 186 ~~wG~ 190 (413)
T 1a12_A 186 YTLGC 190 (413)
T ss_dssp EEEEC
T ss_pred EEeeC
Confidence 88764
No 429
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=51.66 E-value=3.2e+02 Score=31.18 Aligned_cols=61 Identities=10% Similarity=-0.040 Sum_probs=41.7
Q ss_pred eeEEEEeC---CEEEEEecC-CeEEEEeCCCCCceeeEcCCCCCCccceeEEEe-------CCCCCeEEEEee
Q 001978 24 ITCMSAGN---DVIVLGTSK-GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFV-------DPGGSHCIATIV 85 (987)
Q Consensus 24 i~~~~v~n---n~l~~~~~~-g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~l-------Dp~G~hlli~~~ 85 (987)
-..|++.. +.||++-.. +.|.+||+....+..+ ++...........|.+ |+.|.+|+|+..
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l-~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~ 212 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSP-LNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAID 212 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEE-ECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEEC
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEE-EccCccccCCCcEEEEeecccccCCCCCEEEEEeC
Confidence 36788873 567777664 6788899954445433 2322112346899999 999999999876
No 430
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=51.35 E-value=23 Score=30.71 Aligned_cols=50 Identities=16% Similarity=0.357 Sum_probs=38.2
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..+...|++++|+.+.+.. .....+....|..++..|+|++|.+.|.+..
T Consensus 43 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 96 (136)
T 2fo7_A 43 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 96 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3467789999999886531 1223567788999999999999999998764
No 431
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=50.65 E-value=1.8e+02 Score=29.24 Aligned_cols=30 Identities=7% Similarity=-0.065 Sum_probs=26.1
Q ss_pred hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 389 QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 389 ~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
....++...|..++..|+|++|...|.+..
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 54 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQAL 54 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456778899999999999999999998875
No 432
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=50.58 E-value=13 Score=43.34 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=42.8
Q ss_pred eeEEEEeC--------CEEEEEecCCeEEEEeCCC--C----C---ceeeEcCCC------CCCccceeEEEeCCCCCeE
Q 001978 24 ITCMSAGN--------DVIVLGTSKGWLIRHDFGA--G----D---SYDIDLSAG------RPGEQSIHKVFVDPGGSHC 80 (987)
Q Consensus 24 i~~~~v~n--------n~l~~~~~~g~l~ridl~~--~----~---~~~~~l~~~------~~~~~~i~~i~lDp~G~hl 80 (987)
.|++||.. .+|++||.+|+|+++=+.+ + + ++++++-.. .....+|..+-+|+.+.+|
T Consensus 405 lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~L 484 (565)
T 3oky_B 405 LTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGSL 484 (565)
T ss_dssp EEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTEE
T ss_pred eEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCEE
Confidence 68888873 6899999999999884421 1 1 235554211 0013578899999999999
Q ss_pred EEEee
Q 001978 81 IATIV 85 (987)
Q Consensus 81 li~~~ 85 (987)
.|.+.
T Consensus 485 YV~s~ 489 (565)
T 3oky_B 485 YVAFS 489 (565)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 99887
No 433
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=50.19 E-value=53 Score=34.46 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHhC
Q 001978 537 HEIVVHHYIQQGEAKKALQMLRK 559 (987)
Q Consensus 537 y~~ll~~yi~~~~~~~AL~~l~~ 559 (987)
+..+...|...|+|++|++++.+
T Consensus 158 ~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 158 IGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44567788899999999988764
No 434
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=49.92 E-value=30 Score=32.07 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=39.7
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..+...|+|++|+++.+.. .....+....|..++..|+|++|.+.|.+..
T Consensus 50 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 103 (186)
T 3as5_A 50 IAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVA 103 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3577889999999987632 1234677888999999999999999998765
No 435
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=49.83 E-value=18 Score=33.79 Aligned_cols=75 Identities=16% Similarity=0.327 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhhcccccccccccCCCCCCCC
Q 001978 785 KEAICSSLDDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDCGVCRRKILVAGRDYRMARGYASVGPMAP 864 (987)
Q Consensus 785 Kd~L~~~L~~y~~~i~~l~~~m~~~~~~~~~l~~~i~~~~~r~~~i~~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~ 864 (987)
++.|..+|.... +.+...+ +....++.++..++.+..- .....|..|++++...+. + .
T Consensus 15 ~~~Il~Vl~Rd~-~l~~~E~------~ri~kL~~~l~~~k~~~~~-~~~~~C~~C~~~~g~l~~--~------------g 72 (134)
T 1zbd_B 15 KEIINRVIARAE-KMETMEQ------ERIGRLVDRLETMRKNVAG-DGVNRCILCGEQLGMLGS--A------------S 72 (134)
T ss_dssp HHHHHHHHHHHH-HHHHHHH------HHHHHHHHHHHHHHHTCCS-CSSSBCSSSCCBCSTTSC--C------------E
T ss_pred HHHHHHHHhhHH-HHHHhHH------HHHHHHHHHHHHHHHHhcc-CCCccccccCCCcccccC--C------------C
Confidence 466777776653 2111111 2245667777777665332 456889999999843111 2 4
Q ss_pred EEEEcCCChhHHHhHHH
Q 001978 865 FYVFPCGHAFHAQCLIA 881 (987)
Q Consensus 865 fvvFpCgH~fH~~CL~~ 881 (987)
.+..-|+|-+-.+|-..
T Consensus 73 ~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp EECTTTCCEEETTSEEE
T ss_pred CCCCCCCcccccccCCc
Confidence 55667888887777653
No 436
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=49.83 E-value=9.1 Score=32.46 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=40.1
Q ss_pred HHHHchhhHHHHHHhcCC----chh--HhHHHHHHHHHHHhc-CCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRD----PLQ--RDQVYLVQAEAAFAT-KDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~----~~~--~~~V~~~~~~~l~~~-g~y~~Aa~~~~~~~ 418 (987)
..++..|+|++|++..+. ... ...+....|..++.. |+|++|.+.+.+..
T Consensus 48 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 48 KALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 357788999999988652 122 456788999999999 99999999998875
No 437
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.39 E-value=3 Score=33.96 Aligned_cols=29 Identities=28% Similarity=0.785 Sum_probs=22.0
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCCh-hHHHhHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHA-FHAQCLI 880 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~-fH~~CL~ 880 (987)
...|.+|.... + ..++.||||. |...|+.
T Consensus 15 ~~~C~IC~~~~-------~------------~~v~~pCgH~~~C~~C~~ 44 (68)
T 2ea5_A 15 SKDCVVCQNGT-------V------------NWVLLPCRHTCLCDGCVK 44 (68)
T ss_dssp SSCCSSSSSSC-------C------------CCEETTTTBCCSCTTHHH
T ss_pred CCCCCCcCcCC-------C------------CEEEECCCChhhhHHHHh
Confidence 56799996432 2 4566799999 9999997
No 438
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=49.37 E-value=2.5e+02 Score=33.47 Aligned_cols=161 Identities=11% Similarity=0.117 Sum_probs=84.8
Q ss_pred CceeEEEEeCCEEEEEecC-----CeEEEEeCC---CCCceee-EcC-CCCCCccceeEEEeCCCCCeEEEEeecCCC--
Q 001978 22 GVITCMSAGNDVIVLGTSK-----GWLIRHDFG---AGDSYDI-DLS-AGRPGEQSIHKVFVDPGGSHCIATIVGSGG-- 89 (987)
Q Consensus 22 ~~i~~~~v~nn~l~~~~~~-----g~l~ridl~---~~~~~~~-~l~-~~~~~~~~i~~i~lDp~G~hlli~~~~~~~-- 89 (987)
+.+++..-.++.+++.... +.|+|.+.. ..+...+ +.. ....+...+..+-..|.|+.++.+++.+|+
T Consensus 109 ~~~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~ 188 (741)
T 1yr2_A 109 ERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDW 188 (741)
T ss_dssp CEECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSE
T ss_pred cccCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCce
Confidence 3456666777777766533 568898873 2222211 111 111112367788889999999888763222
Q ss_pred ccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCc--------------EEEEEeccCcccccee
Q 001978 90 AETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQ--------------LHEMAVDEKDKREKYI 155 (987)
Q Consensus 90 g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~--------------i~e~~i~~~~~~e~~~ 155 (987)
...+-++....+..... +.+..+.+++|.++ +.|+.++.++. ||...+...... -
T Consensus 189 ~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-------~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~---~ 257 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-------DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA---D 257 (741)
T ss_dssp EEEEEEETTTCCEEEEE-EEEEESCCCEESTT-------SEEEEEECCCC--------CCCCCEEEEEETTSCGGG---C
T ss_pred EEEEEEECCCCCCCCcc-CCCceeccEEEECC-------CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh---C
Confidence 23444555444443321 12223357899842 36777765543 666555432111 1
Q ss_pred eeeeeeCCCCCceeeEEEEeeccCCCceEEEEEEC-----CCeEEEEe
Q 001978 156 KLLFELNELPEAFMGLQMETASLSNGTRYYVMAVT-----PTRLYSFT 198 (987)
Q Consensus 156 k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast-----~~rly~f~ 198 (987)
+.++..++.+..+.++.|. .+.+++++.+. ...+|.+.
T Consensus 258 ~lv~~~~~~~~~~~~~~~S-----pDG~~l~~~~~~~~~~~~~l~~~d 300 (741)
T 1yr2_A 258 QPVFATPELPKRGHGASVS-----SDGRWVVITSSEGTDPVNTVHVAR 300 (741)
T ss_dssp EEEECCTTCTTCEEEEEEC-----TTSCEEEEEEECTTCSCCEEEEEE
T ss_pred EEEeccCCCCeEEEEEEEC-----CCCCEEEEEEEccCCCcceEEEEE
Confidence 3455554322346777774 23356766663 23677553
No 439
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=49.11 E-value=13 Score=34.14 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=38.8
Q ss_pred HHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.|...|+|++|+...+... .-..++...|..++..|+|++|.+.|.+..
T Consensus 61 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 61 CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4778899999999876321 223567788999999999999999988765
No 440
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=48.65 E-value=1.9e+02 Score=29.57 Aligned_cols=26 Identities=8% Similarity=-0.130 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 393 VYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 393 V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.....+..++..|+|++|.+.|.+..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l 102 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 44567889999999999999997654
No 441
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=48.64 E-value=3e+02 Score=30.03 Aligned_cols=166 Identities=11% Similarity=0.052 Sum_probs=89.7
Q ss_pred CceeEEEEe-----CCEEEEEecCCeEEEEeC-C-CC--CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 22 GVITCMSAG-----NDVIVLGTSKGWLIRHDF-G-AG--DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 22 ~~i~~~~v~-----nn~l~~~~~~g~l~ridl-~-~~--~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
+.|.++.+- +..++++|.+|.+-|..+ . +. .--.+-+... . .+.+-.+.+-....++++.|+ +|..
T Consensus 99 e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~-~-~d~lv~v~~~~~~~~i~l~T~---~G~~ 173 (370)
T 3l6v_A 99 ERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLD-E-GDALVGVALTDGDRDVLLFAS---NGKT 173 (370)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCC-T-TCCEEEEEEECSCCEEEEEET---TSEE
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeC-C-CCEEEEEEEeCCCceEEEEeC---CCeE
Confidence 445555442 348999999999999987 1 11 1111112111 1 345555555445567888887 7887
Q ss_pred EEEecCC-------CCceeccCCC-CceEEEEeecCCCC--------C---------------------CCCcceEEEEc
Q 001978 93 FYTHAKW-------SKPRVLSKLK-GLVVNAVAWNRQQI--------T---------------------EASTKEIILGT 135 (987)
Q Consensus 93 ~Y~~~~~-------~k~k~L~klk-g~~i~sVaw~~~~~--------~---------------------~~st~~iLiGt 135 (987)
.-+.... .+--.+-+|+ |-.|.+++..+... . ......+|+.|
T Consensus 174 irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vT 253 (370)
T 3l6v_A 174 VRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTAT 253 (370)
T ss_dssp EEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------------CEEEEEE
T ss_pred EEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEee
Confidence 7665321 1212222332 34555555543100 0 00224799999
Q ss_pred CCCcEEEEEeccC---ccccceeeeeeeeCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 136 DTGQLHEMAVDEK---DKREKYIKLLFELNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 136 ~~G~i~e~~i~~~---~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
++|..--+.+..- .+.-+-++. +++.+..+.+-++.+. ++...++++|...++.++.
T Consensus 254 e~G~gKrt~~~e~~~~~Rg~kGv~~-~k~~~~~g~lv~~~~v-----~~~d~i~liT~~G~~iR~~ 313 (370)
T 3l6v_A 254 ENGYGKRTPLAEYPRKGRGTQGVIG-IQTTERNGKLVRAVLL-----GSTDEVMLISDGGTLVRTR 313 (370)
T ss_dssp TTSEEEEEEGGGSCCBCTTSCCEES-SCCCTTTCSEEEEEEE-----CTTCEEEEEETTCCEEEEE
T ss_pred CCCCEEEEEHHHhcccccCCcceEE-EEecCCCCcEEEEEEe-----CCCceEEEEcCCCeEEEee
Confidence 9997777766422 112233333 3555444667777664 2234666678888888773
No 442
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=48.52 E-value=2.6e+02 Score=29.24 Aligned_cols=96 Identities=7% Similarity=-0.037 Sum_probs=55.4
Q ss_pred ceeEEEEe--CCEEEEEe--cCCeEEEEeCCCCCceeeEcCCCC-----CCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 23 VITCMSAG--NDVIVLGT--SKGWLIRHDFGAGDSYDIDLSAGR-----PGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 23 ~i~~~~v~--nn~l~~~~--~~g~l~ridl~~~~~~~~~l~~~~-----~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
....+++. ++.+|++- .++.|.++|.+...+..+..+-.. ......+.|.+||.+.+++|+-. +++...
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~--~~~~I~ 221 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR--ENGRIQ 221 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET--TTTEEE
T ss_pred CCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC--CCCEEE
Confidence 46789998 57787777 489999999744433333221100 01134789999999667777754 144555
Q ss_pred EEecCCCC-ceecc-CCCCceEEEEeecC
Q 001978 94 YTHAKWSK-PRVLS-KLKGLVVNAVAWNR 120 (987)
Q Consensus 94 Y~~~~~~k-~k~L~-klkg~~i~sVaw~~ 120 (987)
-+....-+ .+.+. .-.|-.+.+++|.+
T Consensus 222 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~p 250 (329)
T 3fvz_A 222 CFKTDTKEFVREIKHASFGRNVFAISYIP 250 (329)
T ss_dssp EEETTTCCEEEEECCTTTTTCEEEEEEET
T ss_pred EEECCCCcEEEEEeccccCCCcceeeecC
Confidence 45543222 22221 11344677888874
No 443
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.44 E-value=12 Score=33.85 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=39.2
Q ss_pred HHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.|+..|+|++|+..++... .-..++...|.-++..|+|++|.+.|.+..
T Consensus 74 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 74 CHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4778899999999876321 124677888999999999999999998775
No 444
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=48.40 E-value=3.6e+02 Score=30.86 Aligned_cols=149 Identities=11% Similarity=0.118 Sum_probs=85.5
Q ss_pred eeEEEEe--CCEEEEEecCCeEEEEeCC--CCC-ceeeEcCCCCCCccceeEEEeCC----CCCeEEEEeecCCCccEEE
Q 001978 24 ITCMSAG--NDVIVLGTSKGWLIRHDFG--AGD-SYDIDLSAGRPGEQSIHKVFVDP----GGSHCIATIVGSGGAETFY 94 (987)
Q Consensus 24 i~~~~v~--nn~l~~~~~~g~l~ridl~--~~~-~~~~~l~~~~~~~~~i~~i~lDp----~G~hlli~~~~~~~g~~~Y 94 (987)
+.+++++ ++.++.+-..|+|..||+. ..+ +.+ ++. ...+..+-++| .|.+++++... ++...-
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~--i~~----g~~p~~va~sp~~~~dg~~l~v~~~~--~~~v~v 252 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE--IKI----GIEARSVESSKFKGYEDRYTIAGAYW--PPQFAI 252 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE--EEC----CSEEEEEEECCSTTCTTTEEEEEEEE--SSEEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE--Eec----CCCcceEEeCCCcCCCCCEEEEEEcc--CCeEEE
Confidence 5667675 4589999999999999993 222 223 332 23568999999 99999888641 455555
Q ss_pred EecCCCCcee-ccCCCC-----------ceEEEEeecCCCCCCCCcceEEE-EcCCCcEEEEEeccCccccceeeeeeee
Q 001978 95 THAKWSKPRV-LSKLKG-----------LVVNAVAWNRQQITEASTKEIIL-GTDTGQLHEMAVDEKDKREKYIKLLFEL 161 (987)
Q Consensus 95 ~~~~~~k~k~-L~klkg-----------~~i~sVaw~~~~~~~~st~~iLi-Gt~~G~i~e~~i~~~~~~e~~~k~v~~l 161 (987)
+.....++.. +. ..| -.+.+|++.++ .+.+++ +..+|.|........+ .++ +..+
T Consensus 253 ~D~~t~~~~~~i~-~~g~~~~~~~~~~~~~v~~i~~s~~------~~~~~vs~~~~g~i~vvd~~~~~----~l~-~~~i 320 (543)
T 1nir_A 253 MDGETLEPKQIVS-TRGMTVDTQTYHPEPRVAAIIASHE------HPEFIVNVKETGKVLLVNYKDID----NLT-VTSI 320 (543)
T ss_dssp EETTTCCEEEEEE-CCEECSSSCCEESCCCEEEEEECSS------SSEEEEEETTTTEEEEEECTTSS----SCE-EEEE
T ss_pred Eeccccccceeec-ccCcccCccccccCCceEEEEECCC------CCEEEEEECCCCeEEEEEecCCC----cce-eEEe
Confidence 5554443222 21 111 25778888742 123444 4456888877665431 122 1122
Q ss_pred CCCCCceeeEEEEeeccCCCceEEEEEEC-CCeEEEEe
Q 001978 162 NELPEAFMGLQMETASLSNGTRYYVMAVT-PTRLYSFT 198 (987)
Q Consensus 162 ~~~~~~I~gi~~~~~~~~~~~~~~i~ast-~~rly~f~ 198 (987)
+. ...+.++.|. .+.+++++++. +..+.-|.
T Consensus 321 ~~-~~~~~~~~~s-----pdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 321 GA-APFLHDGGWD-----SSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp EC-CSSCCCEEEC-----TTSCEEEEEEGGGTEEEEEE
T ss_pred cc-CcCccCceEC-----CCCCEEEEEecCCCeEEEEE
Confidence 21 1346677775 23356665553 55666564
No 445
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=47.61 E-value=34 Score=33.63 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=37.3
Q ss_pred HHHchhhHHHHHHhcCC-----chhHhHHHHH----------------HHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD-----PLQRDQVYLV----------------QAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~~~~~~V~~~----------------~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+++.|+|++|+...+. |. -..++.. .|..++..|+|++|...|.+..
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 47889999999998753 22 2233444 8999999999999999998875
No 446
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=47.54 E-value=3.2 Score=45.58 Aligned_cols=30 Identities=30% Similarity=0.741 Sum_probs=22.7
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCCh-hHHHhHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHA-FHAQCLI 880 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~-fH~~CL~ 880 (987)
....|.+|...... .+..||||. |...|+.
T Consensus 294 ~~~~C~IC~~~~~~-------------------~v~lpCgH~~fC~~C~~ 324 (345)
T 3t6p_A 294 EERTCKVCMDKEVS-------------------VVFIPCGHLVVCQECAP 324 (345)
T ss_dssp TTCBCTTTSSSBCC-------------------EEEETTCCEEECTTTGG
T ss_pred CCCCCCccCCcCCc-------------------eEEcCCCChhHhHHHHh
Confidence 34689999865443 344599999 9999985
No 447
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=47.52 E-value=24 Score=34.15 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=38.3
Q ss_pred HHHchhhHHHHHHhcCC-----chhH---------------hHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD-----PLQR---------------DQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~~~~---------------~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+.+.+. +... ..++...|.-++..|+|++|...|.+..
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 47788999999887542 1111 2678889999999999999999998875
No 448
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=47.37 E-value=14 Score=34.48 Aligned_cols=49 Identities=14% Similarity=0.044 Sum_probs=38.9
Q ss_pred HHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+...|+|++|++..+... .-...+...|.-++..|+|++|.+.|.+..
T Consensus 64 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 64 CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5778899999999876321 223567788999999999999999998765
No 449
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=47.03 E-value=15 Score=32.73 Aligned_cols=50 Identities=20% Similarity=0.322 Sum_probs=39.7
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..++..|+|++|+..++.. .....+....|..++..|+|++|...|.+..
T Consensus 51 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 51 LCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3477889999999987632 1234678889999999999999999988775
No 450
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=46.76 E-value=2.9e+02 Score=29.29 Aligned_cols=100 Identities=11% Similarity=0.102 Sum_probs=55.7
Q ss_pred cCCeEEEEeCCC-CCc-eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecC-CCCceeccCC----CCc
Q 001978 39 SKGWLIRHDFGA-GDS-YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAK-WSKPRVLSKL----KGL 111 (987)
Q Consensus 39 ~~g~l~ridl~~-~~~-~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~-~~k~k~L~kl----kg~ 111 (987)
.+|.+..+++.+ ... ..+.... ......++.+-++|.|++++++.. +++..+-+... ..+.+.+..+ .|.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~spdG~~l~~~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYE-YQENTGIHGMVFDPTETYLYSADL--TANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred CCceEEEEccCCCCcCcceEeeEE-eCCCCcceEEEECCCCCEEEEEcC--CCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 577888888832 222 2233210 011356899999999999877653 13444444443 3333333222 256
Q ss_pred eEEEEeecCCCCCCCCcceEEEEcC-CCcEEEEEecc
Q 001978 112 VVNAVAWNRQQITEASTKEIILGTD-TGQLHEMAVDE 147 (987)
Q Consensus 112 ~i~sVaw~~~~~~~~st~~iLiGt~-~G~i~e~~i~~ 147 (987)
.+.+++|+++ .+.+.++.. +|.|....++.
T Consensus 194 ~p~~~~~spd------g~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 194 HPRWVAMHPT------GNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CEEEEEECTT------SSEEEEEETTTTEEEEEEECT
T ss_pred CCCEeEECCC------CCEEEEEECCCCeEEEEEEeC
Confidence 7999999843 124555543 57776666653
No 451
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=46.50 E-value=2e+02 Score=29.63 Aligned_cols=111 Identities=7% Similarity=0.084 Sum_probs=58.9
Q ss_pred eeEEEEe--CCEEEEEec-CCeEEEEeCCCCCceeeEcCCCC-CCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 24 ITCMSAG--NDVIVLGTS-KGWLIRHDFGAGDSYDIDLSAGR-PGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 24 i~~~~v~--nn~l~~~~~-~g~l~ridl~~~~~~~~~l~~~~-~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
+.+.++. +++++.... +++|+.+|.....+.++.+.... ........+..+|.|..+++.+. ++..+-++..-
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~---~~~v~~~d~~G 155 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA---TSEVREIAPNG 155 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT---TTEEEEECTTS
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC---CCEEEEECCCC
Confidence 4444433 345555555 78899888866666677664221 11124455667888987766655 67666665542
Q ss_pred CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEc-CCCcEEEEEec
Q 001978 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVD 146 (987)
Q Consensus 100 ~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~ 146 (987)
....... ..+ ...+++.. ..+.+++++ ..+.|++...+
T Consensus 156 ~~~w~~~-~~~-~~~~~~~~-------~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 156 QLLNSVK-LSG-TPFSSAFL-------DNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp CEEEEEE-CSS-CCCEEEEC-------TTSCEEEECBTTSEEEEECTT
T ss_pred CEEEEEE-CCC-CccceeEc-------CCCCEEEEeCCCCeEEEEeCc
Confidence 2111111 111 23334443 124566654 45667776544
No 452
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=45.78 E-value=27 Score=33.86 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=39.6
Q ss_pred HHHchhhHHHHHHhcCCch-hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL-QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~-~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|++..+... ....++...|..++..|+|++|...|.+..
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 64 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSI 64 (213)
T ss_dssp HHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4778899999999865321 134688889999999999999999998875
No 453
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=45.64 E-value=16 Score=33.67 Aligned_cols=50 Identities=22% Similarity=0.265 Sum_probs=39.5
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..++..|+|++|++..+.. .....+....|..++..|+|++|...|.+..
T Consensus 55 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 55 LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV 108 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3577889999999987531 1224577888999999999999999998775
No 454
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=45.58 E-value=51 Score=31.82 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=40.1
Q ss_pred HHHHchhhHHHHHHhcCCc----hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDP----LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~----~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..|+..|+|++|++..+.. .....++...|.-++..|+|++|.+.|.+..
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 98 (213)
T 1hh8_A 45 CMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL 98 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3578889999999987632 1234677888999999999999999998875
No 455
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=45.10 E-value=18 Score=31.11 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=38.3
Q ss_pred HHHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..+...|+|++|+.+.+... ....+....|..++..|+|++|...|.+..
T Consensus 51 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 51 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34678899999998875311 223567788999999999999999988764
No 456
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=44.98 E-value=14 Score=35.95 Aligned_cols=49 Identities=16% Similarity=0.113 Sum_probs=39.5
Q ss_pred HHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.|+..|+|++|+..++... .-..++...|..++..|+|++|.+.|.+..
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4678899999999986421 234677888999999999999999998775
No 457
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=44.62 E-value=30 Score=40.29 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=44.0
Q ss_pred ceeEEEEeC----CEEEEEecCCeEEEEeC-CCC----CceeeEcCCCCCCcccee-EEEeCCCCCeEEEEee
Q 001978 23 VITCMSAGN----DVIVLGTSKGWLIRHDF-GAG----DSYDIDLSAGRPGEQSIH-KVFVDPGGSHCIATIV 85 (987)
Q Consensus 23 ~i~~~~v~n----n~l~~~~~~g~l~ridl-~~~----~~~~~~l~~~~~~~~~i~-~i~lDp~G~hlli~~~ 85 (987)
..|+++|.. .++++||.+|+|+++-+ ... ..+++++... ..+|. .+-+|+.+.+|+|.+.
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~---~~pv~~~l~~~~~~~~Lyv~s~ 470 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKD---GSPILRDMAFSINQLYLYVMSE 470 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTT---CCCCCSCCEECTTSSEEEEECS
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecC---CCccccceEEccCCCeEEEEec
Confidence 578888864 38899999999999977 222 1345555421 25674 8889999999999887
No 458
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=44.40 E-value=3.1e+02 Score=28.93 Aligned_cols=86 Identities=9% Similarity=0.070 Sum_probs=49.8
Q ss_pred CceeEEEEeC---CEEEEEec------CCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc-
Q 001978 22 GVITCMSAGN---DVIVLGTS------KGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE- 91 (987)
Q Consensus 22 ~~i~~~~v~n---n~l~~~~~------~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~- 91 (987)
..+.+++.+. +.++++.. ...|+.+|+.......+ .... ....+......|.|.+++..+...+...
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 264 (388)
T 3pe7_A 188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV--KTHA-EGESCTHEFWVPDGSALVYVSYLKGSPDR 264 (388)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES--CCCC-TTEEEEEEEECTTSSCEEEEEEETTCCCE
T ss_pred ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe--eeCC-CCcccccceECCCCCEEEEEecCCCCCcc
Confidence 4567888876 34555544 23899999843333322 2111 1135677788999998866655222222
Q ss_pred -EEEEecCCCCceeccCCCC
Q 001978 92 -TFYTHAKWSKPRVLSKLKG 110 (987)
Q Consensus 92 -~~Y~~~~~~k~k~L~klkg 110 (987)
.|.++....+.+.+..+.+
T Consensus 265 ~l~~~d~~~g~~~~l~~~~~ 284 (388)
T 3pe7_A 265 FIYSADPETLENRQLTSMPA 284 (388)
T ss_dssp EEEEECTTTCCEEEEEEECC
T ss_pred eEEEEecCCCceEEEEcCCC
Confidence 5566666666666665555
No 459
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=44.35 E-value=24 Score=31.75 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=39.1
Q ss_pred HHHHchhhHHHHHHhcCC----------chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRD----------PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~----------~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..+...|+|++|+++.+. +.....+....|..++..|+|++|.+.|.+..
T Consensus 57 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 57 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 357788999999988753 11235678888999999999999999987765
No 460
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=43.80 E-value=1.4e+02 Score=30.09 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=37.5
Q ss_pred HHHc----hhhHHHHHHhcCCchh--HhHHHHHHHHHHHh----cCCHHHHHHHHHhhc
Q 001978 370 VYLD----MKEYAAALANCRDPLQ--RDQVYLVQAEAAFA----TKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~----~~~fe~Al~~~~~~~~--~~~V~~~~~~~l~~----~g~y~~Aa~~~~~~~ 418 (987)
+|.. .+++++|+++.+.... -.......|..++. .|++++|.+.|.+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 105 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC 105 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH
Confidence 4566 8899999988754222 24566678888888 999999999998875
No 461
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=43.40 E-value=33 Score=32.30 Aligned_cols=129 Identities=9% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHchhhHHHHHHhcCC----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc-----CCCChHHHHHH-hcCcChH--HH
Q 001978 371 YLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN-----YILSFEEITLK-FISVSEQ--DA 438 (987)
Q Consensus 371 ll~~~~fe~Al~~~~~----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~-----~~~~~E~v~lk-Fl~~~~~--~~ 438 (987)
+++.|+|++|+...+. ...-..+....|..++..|+|++|...|.+.. +...+-..... +...++. +.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchHHHHHHHHHHHHHHhhccccCCHHHHHHHH
Q 001978 439 LRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEDDTALENRSSEYQSIMREFRAFLSDCKDVLDEATTMKLL 518 (987)
Q Consensus 439 L~~YL~~kl~~l~~~~~~q~~lL~~Wl~elyl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~fl~~~~~~ld~~tv~~ll 518 (987)
-..++..-+..-+.+ ......+..+|... ..+......++..+.......+...+...+
T Consensus 100 A~~~~~~al~~~p~~-----~~~~~~la~~~~~~----------------g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 100 TRAMIDKALALDSNE-----ITALMLLASDAFMQ----------------ANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHHHHCTTC-----HHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCc-----HHHHHHHHHHHHHc----------------ccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Q ss_pred HH
Q 001978 519 ES 520 (987)
Q Consensus 519 ~~ 520 (987)
..
T Consensus 159 ~~ 160 (177)
T 2e2e_A 159 NM 160 (177)
T ss_dssp HH
T ss_pred HH
No 462
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=43.10 E-value=21 Score=41.87 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=42.7
Q ss_pred CceeEEEEe-----C----CEEEEEecCCeEEEEeCCCCC-------ceeeEcCCCCCCccceeEEEeCCCCCeEEEEee
Q 001978 22 GVITCMSAG-----N----DVIVLGTSKGWLIRHDFGAGD-------SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIV 85 (987)
Q Consensus 22 ~~i~~~~v~-----n----n~l~~~~~~g~l~ridl~~~~-------~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~ 85 (987)
...|+++|. + .++++||.+|+|+++=+.++. +.++++.. ...+|..+-+|+.+.+++|.+.
T Consensus 362 ~~~T~IaVd~v~a~~g~~ytVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~---~~~pi~~L~ls~~~~~LyV~s~ 438 (590)
T 3nvq_A 362 YHYQKVAVHRMQASHGETFHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFR---RAAAIQTMSLDAERRKLYVSSQ 438 (590)
T ss_dssp SCEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCS---SCCCCCEEEEETTTTEEEEECS
T ss_pred CcEEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccC---CCCceeeEEEcCCCCEEEEEec
Confidence 346777753 2 489999999999998662221 23344321 1357899999999999999886
No 463
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=42.82 E-value=3.4e+02 Score=28.94 Aligned_cols=162 Identities=12% Similarity=0.170 Sum_probs=88.0
Q ss_pred CceeEE-EEe----CCEEEEEecCCeEEEEeC-C-CC-C-ceeeE-cCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc
Q 001978 22 GVITCM-SAG----NDVIVLGTSKGWLIRHDF-G-AG-D-SYDID-LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE 91 (987)
Q Consensus 22 ~~i~~~-~v~----nn~l~~~~~~g~l~ridl-~-~~-~-~~~~~-l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~ 91 (987)
+.|.++ .+. +..++++|.+|.+-|..+ . +. . -.-+. +... . ++.+-.+.+-....++++.|+ +|.
T Consensus 92 e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~-e-~d~lv~~~~~~~~~~i~l~T~---~G~ 166 (323)
T 1wp5_A 92 EEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK-N-DDQVVDVHLTDGMNELFLVTH---NGY 166 (323)
T ss_dssp CCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC-T-TCCEEEEEEECSCSEEEEEET---TSE
T ss_pred CEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeC-C-CCEEEEEEEeCCCCEEEEEeC---CCc
Confidence 345554 554 347999999999999977 1 11 1 11111 1111 2 255555555445667888887 788
Q ss_pred EEEEecCC-------CCceeccCCC-CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC---ccccceeeeeee
Q 001978 92 TFYTHAKW-------SKPRVLSKLK-GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK---DKREKYIKLLFE 160 (987)
Q Consensus 92 ~~Y~~~~~-------~k~k~L~klk-g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~---~~~e~~~k~v~~ 160 (987)
.+-+.... .+.-.+.+|+ |-.|.+++.-++ ....+|+.|.+|....+.++.- .+.-+-++.+-.
T Consensus 167 ~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~-----~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~ 241 (323)
T 1wp5_A 167 ALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITS-----KDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRE 241 (323)
T ss_dssp EEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECC-----TTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCC
T ss_pred EEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcC-----CCcEEEEEECCCceEEEEHHHccccCCCCCCEECeee
Confidence 87766421 1222333343 344666655422 1125999999998777776531 122223333212
Q ss_pred eCCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 161 LNELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 161 l~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
++..++.+.++.... + ...++++|+..++..+.
T Consensus 242 ~~~~~~~l~~~~~v~----~-~~~i~~it~~g~~ir~~ 274 (323)
T 1wp5_A 242 LKANPHRISGFVVAQ----D-SDTIYLQTEKSFIETIK 274 (323)
T ss_dssp CSSSCCCEEEEEEEC----T-TCEEEEEETTSCEEEEE
T ss_pred cCCCCceEEEEEEeC----C-CCeEEEEeCCCeEEEEE
Confidence 332233566554431 1 23566668888888773
No 464
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=42.46 E-value=18 Score=40.87 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=37.9
Q ss_pred HHHHchhhHHHHHHhcCCc------------hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDP------------LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~------------~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+|..+|+|++|+.+++.. ......+...|.-+..+|+|++|..+|.+..
T Consensus 348 ~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 348 GVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3467788999999887631 1244556788888899999999999988876
No 465
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=41.97 E-value=39 Score=31.38 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=38.3
Q ss_pred HHHchhhHHHHHHhcCCch----------------------hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL----------------------QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~----------------------~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++++|+|++|+....... ....++...|.-++..|+|++|...|.+..
T Consensus 20 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 20 ELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4788899999988754211 123678889999999999999999998875
No 466
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=41.90 E-value=17 Score=35.98 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=40.2
Q ss_pred HHHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 369 KVYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 369 ~~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..|...|+|++|+...+... .-..++...|.-++..|+|++|...|.+..
T Consensus 62 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 115 (208)
T 3urz_A 62 LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35788999999999876321 224677888999999999999999998875
No 467
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=41.02 E-value=2.4e+02 Score=29.05 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 391 DQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 391 ~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
..+...+|..+...|++++|.+.|.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al 126 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLL 126 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3567788888888888888888888775
No 468
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=40.76 E-value=53 Score=28.54 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=39.4
Q ss_pred HHHchhhHHHHHHhcCC-----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD-----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.|+..|+|++|++..+. |.. ..++...|.-++..|+|++|...|.+..
T Consensus 36 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 36 TFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999998763 222 5678889999999999999999988765
No 469
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=40.29 E-value=8.2 Score=31.26 Aligned_cols=30 Identities=30% Similarity=0.660 Sum_probs=20.9
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLI 880 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~ 880 (987)
+...|.+|++. + . -+.-=.|..+||..|+.
T Consensus 11 ~~~~C~vC~~~--~-----~------------ll~Cd~C~~~~H~~Cl~ 40 (66)
T 2lri_C 11 PGARCGVCGDG--T-----D------------VLRCTHCAAAFHWRCHF 40 (66)
T ss_dssp TTCCCTTTSCC--T-----T------------CEECSSSCCEECHHHHC
T ss_pred CCCCcCCCCCC--C-----e------------EEECCCCCCceecccCC
Confidence 46789999852 2 1 22223599999999984
No 470
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=39.93 E-value=3.1e+02 Score=32.63 Aligned_cols=153 Identities=12% Similarity=0.148 Sum_probs=85.1
Q ss_pred EeCCEEEEEecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC-----CCce
Q 001978 29 AGNDVIVLGTSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW-----SKPR 103 (987)
Q Consensus 29 v~nn~l~~~~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~-----~k~k 103 (987)
...++.+..++.|.|-|..-.+-........ .++.+..+|.-.+-.++++-|+ .|.+|.+.... .+-+
T Consensus 470 ~~e~v~v~ls~~GyiKr~~g~~~~~~~~~~k----~~D~~~~~~~~~t~d~ll~ft~---~Gr~y~~~~~~lP~~~~~G~ 542 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK----AGDSFKAAVKGKSNQPVVFVDS---TGRSYAIDPITLPSARGQGE 542 (716)
T ss_dssp CCCCCCEEEETTTEEEECCC-------------------CCEEECCCSSSCEEEEET---TSEEEEECTTTSCCCC---C
T ss_pred CCceEEEEEecCCeEeccCCCCcCccccccC----CCCeEEEEEEecCCCEEEEEec---CCcEEEEEeeecccccccCe
Confidence 3566778888999998842211101111111 2356777888777777888787 79998875311 1223
Q ss_pred eccCC----CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeeccC
Q 001978 104 VLSKL----KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASLS 179 (987)
Q Consensus 104 ~L~kl----kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~~ 179 (987)
++..+ .|-.|.+|--.+ ....++++|++|.+.-+.+..-...-+.=+...+|.+. ..+.++....
T Consensus 543 ~i~~ll~l~~~e~i~~~~~~~------~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~~-d~lv~~~~~~---- 611 (716)
T 1zvu_A 543 PLTGKLTLPPGATVDHMLMES------DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIE---- 611 (716)
T ss_dssp BSTTTSCCCTTCCEEEEECCC------TTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT-CCBCCCEECC----
T ss_pred eHHhccCCCCCCeEEEEEEec------CCceEEEEeCCceEEEecHHHhcccCccceEEEeeCCC-CEEEEEEEec----
Confidence 33322 344566654331 23479999999999988875431111223445567653 3354444321
Q ss_pred CCceEEEEEECCCeEEEEec
Q 001978 180 NGTRYYVMAVTPTRLYSFTG 199 (987)
Q Consensus 180 ~~~~~~i~ast~~rly~f~g 199 (987)
.+...++++|...++..|..
T Consensus 612 ~~~~~v~l~t~~g~~lrf~~ 631 (716)
T 1zvu_A 612 DASDMLLAITQAGRMLMFPV 631 (716)
T ss_dssp CTTCEEEEEETTSEEEEEES
T ss_pred CCCCEEEEEeCCCeEEEEEH
Confidence 12247888899999998965
No 471
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=39.77 E-value=4.9 Score=32.58 Aligned_cols=32 Identities=22% Similarity=0.508 Sum_probs=24.4
Q ss_pred ccccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHH
Q 001978 832 RDEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLI 880 (987)
Q Consensus 832 ~~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~ 880 (987)
...+|..|+++|.. . ..++-.-|..||..|+.
T Consensus 10 ~~~~C~~C~~~i~~-----~------------e~~~~~~~~~~H~~CF~ 41 (72)
T 3f6q_B 10 ASATCERCKGGFAP-----A------------EKIVNSNGELYHEQCFV 41 (72)
T ss_dssp TTCBCTTTCCBCCT-----T------------CEEEEETTEEEETTTSS
T ss_pred CCccchhcCccccC-----C------------ceEEEeCcCeeCcCCCc
Confidence 46789999999987 3 44555667889988874
No 472
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=39.75 E-value=1.4e+02 Score=30.74 Aligned_cols=113 Identities=14% Similarity=0.099 Sum_probs=51.1
Q ss_pred HHHHHHhcccHHHHHHHHhCC----CCchhhHHhhHHHHHh-HChHHHHHHHHcCCCCCCCcchhhhhh---cCCCCCCC
Q 001978 540 VVHHYIQQGEAKKALQMLRKP----AVPIDLQYKFAPDLIM-LDAYETVESWMTTNNLNPRKLIPAMMR---YSSEPHAK 611 (987)
Q Consensus 540 ll~~yi~~~~~~~AL~~l~~~----~~~~~li~k~~~~Ll~-~~p~~ti~~l~~~~~ld~~~lip~L~~---~~~~~~~~ 611 (987)
+...+...|++++|+..+.+. ++..+..+..+..++. ..+++++..+-+....+|......+.. +...
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~---- 198 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQ---- 198 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHH----
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhh----
Confidence 334455666666666655431 2223455555555543 455556555544333333221111000 0000
Q ss_pred CChHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHH
Q 001978 612 NETHEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQ 657 (987)
Q Consensus 612 ~~~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~ 657 (987)
.....++..|+..+...+ .+...+..+-.+|...++.++-+..+.
T Consensus 199 ~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~ 243 (287)
T 3qou_A 199 AADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLF 243 (287)
T ss_dssp HTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 001124555666665544 355666666666666554344333333
No 473
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=39.61 E-value=28 Score=35.32 Aligned_cols=114 Identities=9% Similarity=0.132 Sum_probs=69.2
Q ss_pred hcccHHHHHHHHhCCCCchhhHHhhHHHHHhHChHHHHHHHHcCCCCCCCcchhhhhhcCCCCCCCCChHHHHHHHHHHH
Q 001978 546 QQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNNLNPRKLIPAMMRYSSEPHAKNETHEVIKYLEFCV 625 (987)
Q Consensus 546 ~~~~~~~AL~~l~~~~~~~~li~k~~~~Ll~~~p~~ti~~l~~~~~ld~~~lip~L~~~~~~~~~~~~~~~~~~YLe~li 625 (987)
.+..|+++|.-+-...|+.+.+.+|..|+.++-|... . .-.. ....||.|+
T Consensus 54 ~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~--------~-~~s~--------------------L~~lLErc~ 104 (223)
T 4aez_C 54 ERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGE--------T-KTSG--------------------LVTLLERCT 104 (223)
T ss_dssp HHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCC--------C-TTTC--------------------HHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCC--------c-chhh--------------------HHHHHHHHH
Confidence 3456788887765667889999999999998766310 0 0111 334455555
Q ss_pred hhcCC-----CChhHHHHHHHHhhcC-CChHHHHHHHHHhhCCCCCCCCcccCChHHHHHHHHhc-Ccceeeehhhhccc
Q 001978 626 HRLHN-----EDPGVHNLLLSLYAKQ-EDDSALLRFLQCKFGKGRENGPEFFYDPKYALRLCLKE-KRMRACVHIYGMMS 698 (987)
Q Consensus 626 ~~~~~-----~~~~ihn~ll~Ly~~~-~~~~kLl~fL~~~~~~~~~~~~~~~yd~~~aLrlc~~~-~~~~~~v~L~~~~g 698 (987)
..... .|+.+-. +...|+++ +++..+..||... + |+.+. -++.+-+.+|..+|
T Consensus 105 ~~F~~~~rYknD~RyLk-lWl~Ya~~~~~p~~if~~L~~~-~------------------IG~~~AlfYe~wA~~lE~~g 164 (223)
T 4aez_C 105 REFVRNPLYKDDVRYLR-IWMQYVNYIDEPVELFSFLAHH-H------------------IGQESSIFYEEYANYFESRG 164 (223)
T ss_dssp HHTTTCGGGTTCHHHHH-HHHHHHTTCSCHHHHHHHHHHT-T------------------CSTTBHHHHHHHHHHHHHTT
T ss_pred HHhcccccccCCHHHHH-HHHHHHHccCCHHHHHHHHHHC-C------------------cchhHHHHHHHHHHHHHHcC
Confidence 44321 2222222 22245553 3456788888876 1 12221 25677788899999
Q ss_pred cHHHHHHHHH
Q 001978 699 MHEEAVALAL 708 (987)
Q Consensus 699 ~~~eAl~l~l 708 (987)
+|.+|-.++.
T Consensus 165 ~~~~A~~Vy~ 174 (223)
T 4aez_C 165 LFQKADEVYQ 174 (223)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999998765
No 474
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=39.38 E-value=26 Score=33.25 Aligned_cols=49 Identities=31% Similarity=0.310 Sum_probs=40.2
Q ss_pred HHHchhhHHHHHHhcCCch----hHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPL----QRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~----~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++..|+|++|+...+... .-..++...|..++..|+|++|...|.+..
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 4888999999999986522 234678888999999999999999998875
No 475
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=38.79 E-value=58 Score=37.67 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=43.8
Q ss_pred ceeEEEEe----CCEEEEEecCCeEEEEeCCC----CCceeeEcCCCCCCccce-eEEEeCCCCCeEEEEee
Q 001978 23 VITCMSAG----NDVIVLGTSKGWLIRHDFGA----GDSYDIDLSAGRPGEQSI-HKVFVDPGGSHCIATIV 85 (987)
Q Consensus 23 ~i~~~~v~----nn~l~~~~~~g~l~ridl~~----~~~~~~~l~~~~~~~~~i-~~i~lDp~G~hlli~~~ 85 (987)
..|+++|. -.++++||.+|+|+++=+.+ ...+++.++. ..+| ..+-+|+.+.+|+|.+.
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~----~~pi~~~l~l~~~~~~Lyv~s~ 455 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQ----GSAVSRDLTFDGTFEHLYVMTQ 455 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESST----TSCCCSCCEECTTSSEEEEECS
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCC----CCcceeeEEEecCCCEEEEEeC
Confidence 46887765 24889999999999987722 2246777742 2467 48999999999999876
No 476
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=38.72 E-value=4.1e+02 Score=28.79 Aligned_cols=51 Identities=8% Similarity=0.005 Sum_probs=32.6
Q ss_pred CEEEEEecCCeEEEEeC-CCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEe
Q 001978 32 DVIVLGTSKGWLIRHDF-GAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATI 84 (987)
Q Consensus 32 n~l~~~~~~g~l~ridl-~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~ 84 (987)
..++=|..+|+|-.||+ .+..+..+.-+... ...+..+-+.|.|..+++.+
T Consensus 194 ~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~--v~~v~~vafSpdG~~lvs~s 245 (356)
T 2w18_A 194 EALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY--QASVCHKAYSEMGLLFIVLS 245 (356)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCC-----CCCEEEEEEETTEEEEEEC
T ss_pred ceEEEecCCCcEEEEECCCCcEEEEEcCCCcc--eeeeEEEEECCCCCEEEEec
Confidence 67777889999999999 55555555432111 12455555678887766544
No 477
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=38.08 E-value=3.8e+02 Score=28.20 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=87.8
Q ss_pred CceeEEEE-----eCCEEEEEecCCeEEEEeC---CCCCceeeE-cCCCCCCccceeEEEeCCCCCeEEEEeecCCCccE
Q 001978 22 GVITCMSA-----GNDVIVLGTSKGWLIRHDF---GAGDSYDID-LSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAET 92 (987)
Q Consensus 22 ~~i~~~~v-----~nn~l~~~~~~g~l~ridl---~~~~~~~~~-l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~ 92 (987)
+.|.++.. .+..+++++.+|.+-|..+ .+..-.-+. +... . .+.+-.+..-....++++.|+ +|..
T Consensus 95 e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~-~-~d~lv~~~~~~~~~~i~l~T~---~G~~ 169 (307)
T 1zi0_A 95 ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLV-D-GDELIGVDLTSGEDEVMLFSA---EGKV 169 (307)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCC-T-TCCEEEEEEECTTCEEEEEET---TSEE
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEEC-C-CCEEEEEEEeCCCCEEEEECC---CCcE
Confidence 45666544 2347999999999999977 111111111 1111 1 245555555344557777777 7888
Q ss_pred EEEecCC-------CCceeccCC-CCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEeccC---ccccceeeeeeee
Q 001978 93 FYTHAKW-------SKPRVLSKL-KGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVDEK---DKREKYIKLLFEL 161 (987)
Q Consensus 93 ~Y~~~~~-------~k~k~L~kl-kg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~~~---~~~e~~~k~v~~l 161 (987)
+-+.... .+-..+-+| .|-.|.+++..++ ...+|+.|.+|..-.+.++.- .+.-+-.+ ++.+
T Consensus 170 irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~------~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~-~~~~ 242 (307)
T 1zi0_A 170 VRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG------DGAILTATQNGYGKRTAVAEYPTKSRATKGVI-SIKV 242 (307)
T ss_dssp EEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCS------SCEEEEEETTSEEEEECGGGSCCCCTTSCCEE-SSCC
T ss_pred EEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecC------CCEEEEEEcCCceEEEEHHHhccCCCCCCCEE-eeEe
Confidence 7665421 111122233 3445666654411 126999999998766655321 11122222 2455
Q ss_pred CCCCCceeeEEEEeeccCCCceEEEEEECCCeEEEEe
Q 001978 162 NELPEAFMGLQMETASLSNGTRYYVMAVTPTRLYSFT 198 (987)
Q Consensus 162 ~~~~~~I~gi~~~~~~~~~~~~~~i~ast~~rly~f~ 198 (987)
.+.++.+-++.... + ..-++++|...++..|.
T Consensus 243 ~~~~~~lv~~~~v~----~-~~~l~~~t~~g~~ir~~ 274 (307)
T 1zi0_A 243 TERNGLVVGAVQVD----D-CDQIMMITDAGTLVRTR 274 (307)
T ss_dssp CTTTCSEEEEEEEC----T-TCEEEEEESSCCEEEEE
T ss_pred cCCCCeEEEEEEeC----C-CceEEEEcCCCcEEEEe
Confidence 55456677766542 2 24566778888888774
No 478
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=38.04 E-value=61 Score=34.71 Aligned_cols=49 Identities=22% Similarity=0.217 Sum_probs=39.0
Q ss_pred HHHchhhHHHHHHhcCC-----chh--------------HhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD-----PLQ--------------RDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~-----~~~--------------~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.|+..|+|++|+...+. |.. +..++...|.-++..|+|++|...|.+..
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788999999887542 221 14778899999999999999999999875
No 479
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=38.03 E-value=2.5e+02 Score=26.03 Aligned_cols=42 Identities=19% Similarity=0.089 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHHh
Q 001978 617 VIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCK 659 (987)
Q Consensus 617 ~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~~ 659 (987)
++.+++..+...+. ++..+..+-.+|...++.++-+.+++..
T Consensus 93 a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 93 ELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 46677777665443 5566666666666655555555555553
No 480
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=38.01 E-value=54 Score=36.85 Aligned_cols=49 Identities=10% Similarity=-0.016 Sum_probs=35.5
Q ss_pred HHHchhhHHHHHHhcCCc------------hhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDP------------LQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~------------~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.|..+|+|++|+.+++.. ......+...|.-+..+|+|++|..+|.+..
T Consensus 338 ~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 338 ACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 466778888888887631 1234556677788888888888888888776
No 481
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=37.88 E-value=4.2e+02 Score=28.63 Aligned_cols=55 Identities=7% Similarity=0.088 Sum_probs=33.5
Q ss_pred eCCEEEEEe-------------cCCeEEEEeC-CC-CCceeeEcCCC--CCCccceeEEEeCC--CCC-eEEEEe
Q 001978 30 GNDVIVLGT-------------SKGWLIRHDF-GA-GDSYDIDLSAG--RPGEQSIHKVFVDP--GGS-HCIATI 84 (987)
Q Consensus 30 ~nn~l~~~~-------------~~g~l~ridl-~~-~~~~~~~l~~~--~~~~~~i~~i~lDp--~G~-hlli~~ 84 (987)
.++.+++++ ..|.|+++|+ .+ ..+.++.+.-. ....-..+.|.+.+ .|. .++|+-
T Consensus 59 ~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvn 133 (355)
T 3sre_A 59 PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN 133 (355)
T ss_dssp TTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred CCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEE
Confidence 357888887 7999999999 44 34555555321 11134678887754 454 466664
No 482
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=37.37 E-value=2.6e+02 Score=29.90 Aligned_cols=113 Identities=12% Similarity=-0.020 Sum_probs=0.0
Q ss_pred EEEEe--CCEEEEEe----------cCCeEEEEeC-CCCCceeeEcCCCCC-CccceeEEEeCCCCCeEEEEeecCCCcc
Q 001978 26 CMSAG--NDVIVLGT----------SKGWLIRHDF-GAGDSYDIDLSAGRP-GEQSIHKVFVDPGGSHCIATIVGSGGAE 91 (987)
Q Consensus 26 ~~~v~--nn~l~~~~----------~~g~l~ridl-~~~~~~~~~l~~~~~-~~~~i~~i~lDp~G~hlli~~~~~~~g~ 91 (987)
+++++ ++.+|++- .++.|..||. ....+.+++++.... .......+.++|.|++++++.. +..
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~---~~~ 130 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNA---SPA 130 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEE---SSS
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECC---CCC
Q ss_pred EEEEecCCCCceeccC-CCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEec
Q 001978 92 TFYTHAKWSKPRVLSK-LKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (987)
Q Consensus 92 ~~Y~~~~~~k~k~L~k-lkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (987)
.--.-......+.+.. +.--....|.+.+.... .++..+.+|.+....++
T Consensus 131 ~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~-----~~~~~~~dg~~~~v~~~ 181 (361)
T 2oiz_A 131 TSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPR-----SFMTICGDGGLLTINLG 181 (361)
T ss_dssp EEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSS-----EEEEEETTSSEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEecCCCcceeEEcCCCCe-----eEEEECCCCcEEEEEEC
No 483
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=37.19 E-value=32 Score=29.81 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=37.3
Q ss_pred HHHchhhHHHHHHhcC-------C----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCR-------D----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~-------~----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.++++|+|+.|..-.+ . ...+..|+...|.-++..|+++.|...+.+..
T Consensus 14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4667777777665532 1 13477899999999999999999999987765
No 484
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=37.15 E-value=3.3e+02 Score=27.22 Aligned_cols=113 Identities=13% Similarity=0.053 Sum_probs=62.6
Q ss_pred ceeEEEEe--CCEEEEEe-cCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 23 VITCMSAG--NDVIVLGT-SKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 23 ~i~~~~v~--nn~l~~~~-~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
...++++. ++.||++- .++.|+++|++...+..+ ++. +....+.|-+||.|.++.++-. +++..+.+....
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~-~~~---~~~~p~~ia~d~~~~~lyv~d~--~~~~I~~~~~~g 110 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI-IRQ---DLGSPEGIALDHLGRTIFWTDS--QLDRIEVAKMDG 110 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE-ECT---TCCCEEEEEEETTTTEEEEEET--TTTEEEEEETTS
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE-EEC---CCCCccEEEEEecCCeEEEEEC--CCCEEEEEEcCC
Confidence 45788886 46777665 468999999944333322 221 1246789999998888888754 134555444433
Q ss_pred CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcC---CCcEEEEEecc
Q 001978 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTD---TGQLHEMAVDE 147 (987)
Q Consensus 100 ~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~---~G~i~e~~i~~ 147 (987)
...+.+.......-..+++++. .+.+.+... .+.|+.+.+++
T Consensus 111 ~~~~~~~~~~~~~P~~i~vd~~------~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 111 TQRRVLFDTGLVNPRGIVTDPV------RGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp CSCEEEECSSCSSEEEEEEETT------TTEEEEEECCSSSCEEEEEETTS
T ss_pred CCEEEEEECCCCCccEEEEeeC------CCEEEEEECCCCCcEEEEEecCC
Confidence 2223322111124566677631 234444432 35666665543
No 485
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=37.03 E-value=56 Score=38.95 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=50.0
Q ss_pred eeEEEEeC--CEEEEEec---------CCeEEEEeCCCCCc-eeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc
Q 001978 24 ITCMSAGN--DVIVLGTS---------KGWLIRHDFGAGDS-YDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE 91 (987)
Q Consensus 24 i~~~~v~n--n~l~~~~~---------~g~l~ridl~~~~~-~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~ 91 (987)
+.+++++. +.|+++.. .+.|+++|+...+. ....++ ..+..+-..|.|++++.+.+ +.
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~------~~~~~~~~SPDG~~la~~~~----~~ 131 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP------RPIQYLCWSPVGSKLAYVYQ----NN 131 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC------SSBCCEEECSSTTCEEEEET----TE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC------cccccceECCCCCEEEEEEC----Ce
Confidence 67888874 47777765 58999999932222 101222 35778889999999887754 78
Q ss_pred EEEEecCCCCceecc
Q 001978 92 TFYTHAKWSKPRVLS 106 (987)
Q Consensus 92 ~~Y~~~~~~k~k~L~ 106 (987)
.|++.....+.+.+.
T Consensus 132 i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 132 IYLKQRPGDPPFQIT 146 (719)
T ss_dssp EEEESSTTSCCEECC
T ss_pred EEEEeCCCCCcEEEe
Confidence 888877666666654
No 486
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=36.91 E-value=2.3e+02 Score=30.64 Aligned_cols=132 Identities=12% Similarity=0.099 Sum_probs=70.3
Q ss_pred CcceehhHHHHHhhcCCCceeEEEE---e-----CCEEEEEecC---CeEEEEeC-CC-CCc-------eeeEcCCCCCC
Q 001978 5 RQVFQVDVLERYAAKGRGVITCMSA---G-----NDVIVLGTSK---GWLIRHDF-GA-GDS-------YDIDLSAGRPG 64 (987)
Q Consensus 5 ~~~f~~~~~~~~~~~~~~~i~~~~v---~-----nn~l~~~~~~---g~l~ridl-~~-~~~-------~~~~l~~~~~~ 64 (987)
-++|++|+-.-++-+| .+.|++- . .+++|+|.++ |+|+.+++ .| ... .++..|.....
T Consensus 182 mQLYS~er~~sQ~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~ 259 (365)
T 2xzh_A 182 MQLYSVDRKVSQPIEG--HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQN 259 (365)
T ss_dssp EEEEETTTTEEEEECC--SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTT
T ss_pred EEEEeecccccceeee--eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccC
Confidence 3677888777776666 4555542 2 2378888875 79999999 44 221 12222321112
Q ss_pred ccceeEEEeCCCCCeEEEEeecCCCccEEEEecCCCCceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEE
Q 001978 65 EQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKWSKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMA 144 (987)
Q Consensus 65 ~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~ 144 (987)
|=+ -.+.+.+.=.-+.+-|. -|-.|.....+-..-...+..+-.|=.-|-+ .+|+-|+.-+++|.++...
T Consensus 260 DFP-Vamqvs~kygviyviTK---~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~------~~~~Gi~~Vnr~GqVl~v~ 329 (365)
T 2xzh_A 260 DFP-VAMQISEKHDVVFLITK---YGYIHLYDLETGTCIYMNRISGETIFVTAPH------EATAGIIGVNRKGQVLSVC 329 (365)
T ss_dssp CCE-EEEEEETTTTEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEEE------GGGTEEEEEETTCEEEEEE
T ss_pred Cce-EEEEecccCCEEEEEeC---CcEEEEEEcccCcEEEEeccCCCceEEeccc------CCCCcEEEEcCCCEEEEEE
Confidence 222 23344343333555555 4555444444433333333333233222222 2455677778999999999
Q ss_pred eccC
Q 001978 145 VDEK 148 (987)
Q Consensus 145 i~~~ 148 (987)
++..
T Consensus 330 v~~~ 333 (365)
T 2xzh_A 330 VEEE 333 (365)
T ss_dssp ECTT
T ss_pred ECcc
Confidence 9865
No 487
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=36.83 E-value=3.7e+02 Score=30.48 Aligned_cols=45 Identities=11% Similarity=0.046 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHHH
Q 001978 614 THEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQC 658 (987)
Q Consensus 614 ~~~~~~YLe~li~~~~~~~~~ihn~ll~Ly~~~~~~~kLl~fL~~ 658 (987)
.+.+...++.+....-..+...++.++..|++.++-++...+|+.
T Consensus 156 ~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 456777777766554445677788888888876554444444443
No 488
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=36.51 E-value=28 Score=34.45 Aligned_cols=49 Identities=12% Similarity=0.025 Sum_probs=40.2
Q ss_pred HHHchhhHHHHHHhcCC----chhHhHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRD----PLQRDQVYLVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~----~~~~~~V~~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+...|+|++|++..+. ...-..++...|.-++..|+|++|.+.|.+..
T Consensus 51 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 103 (228)
T 4i17_A 51 CADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGI 103 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 47788999999998763 22345678889999999999999999998875
No 489
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=36.27 E-value=3.9e+02 Score=27.83 Aligned_cols=153 Identities=10% Similarity=-0.026 Sum_probs=83.1
Q ss_pred ceeEEEEe--CCEEEEE-ecCCeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCccEEEEecCC
Q 001978 23 VITCMSAG--NDVIVLG-TSKGWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETFYTHAKW 99 (987)
Q Consensus 23 ~i~~~~v~--nn~l~~~-~~~g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~Y~~~~~ 99 (987)
....+||. ++.||++ ..++.|.++|++......+ +.. .......|-+||.+.+++++-. +..+..+-+...-
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~-~~~---~~~~P~~iavdp~~g~ly~~d~-~~~~~I~~~~~dG 152 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL-FRE---NGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNG 152 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE-EEC---TTCCEEEEEEETTTTEEEEEEC-SSSCEEEEEETTS
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEE-EEC---CCCCcceEEeCCCCCEEEEEcc-CCCCeEEEEcCCC
Confidence 34678885 5677766 5678999999944433222 211 1245689999998888888754 1114454444333
Q ss_pred CCceeccCCCCceEEEEeecCCCCCCCCcceEEEEc-CCCcEEEEEeccCccccceeeeeeeeCCCCCceeeEEEEeecc
Q 001978 100 SKPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGT-DTGQLHEMAVDEKDKREKYIKLLFELNELPEAFMGLQMETASL 178 (987)
Q Consensus 100 ~k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt-~~G~i~e~~i~~~~~~e~~~k~v~~l~~~~~~I~gi~~~~~~~ 178 (987)
...+.+..-....-..+||++. .+.+.+.. ..+.|+.+.+++. ..+.+...+....-..||.+.
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~------~~~lY~~D~~~~~I~~~d~dg~-----~~~~~~~~~~~~~~P~giav~---- 217 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLL------SGRLYWVDSKLHSISSIDVNGG-----NRKTILEDEKRLAHPFSLAVF---- 217 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETT------TTEEEEEETTTTEEEEEETTSC-----SCEEEEECTTTTSSEEEEEEE----
T ss_pred CCeEEEEECCCCCceEEEEecc------CCEEEEEECCCCeEEEEecCCC-----ceEEEeecCCccCCcEEEEEE----
Confidence 3333332112235678888832 23565554 4467777766543 123333332111224677764
Q ss_pred CCCceEEEEEEC-CCeEEEEe
Q 001978 179 SNGTRYYVMAVT-PTRLYSFT 198 (987)
Q Consensus 179 ~~~~~~~i~ast-~~rly~f~ 198 (987)
+ +.+.|+.. ..+++.+.
T Consensus 218 -~--~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 218 -E--DKVFWTDIINEAIFSAN 235 (316)
T ss_dssp -T--TEEEEEETTTTEEEEEE
T ss_pred -C--CEEEEEECCCCeEEEEe
Confidence 1 34444443 56677654
No 490
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=36.12 E-value=5.9e+02 Score=29.85 Aligned_cols=140 Identities=14% Similarity=0.063 Sum_probs=75.1
Q ss_pred eeEEEEe--CCEEEEEecCCe----------------EEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEee
Q 001978 24 ITCMSAG--NDVIVLGTSKGW----------------LIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIV 85 (987)
Q Consensus 24 i~~~~v~--nn~l~~~~~~g~----------------l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~ 85 (987)
+.+++.+ ++.++++...+. |+++++.........+-........+..+..+|.|.++++.+.
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 4556666 347777776554 9999993222221222111111234677888999999998876
Q ss_pred cCC--CccEEEEecCC------C--CceeccCCCCceEEEEeecCCCCCCCCcceEEEEcCC----CcEEEEEeccCccc
Q 001978 86 GSG--GAETFYTHAKW------S--KPRVLSKLKGLVVNAVAWNRQQITEASTKEIILGTDT----GQLHEMAVDEKDKR 151 (987)
Q Consensus 86 ~~~--~g~~~Y~~~~~------~--k~k~L~klkg~~i~sVaw~~~~~~~~st~~iLiGt~~----G~i~e~~i~~~~~~ 151 (987)
.+. +.+.|++.... . +.+.|..-.+. +.. .|.++ .+.|++.|.+ +.|+...+...+
T Consensus 253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~s~d------g~~l~~~s~~~~~~~~l~~~d~~~~~-- 322 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG-EYD-YVTNE------GTVFTFKTNRHSPNYRLINIDFTDPE-- 322 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS-CEE-EEEEE------TTEEEEEECTTCTTCEEEEEETTSCC--
T ss_pred ccCCCccEEEEEECcccccccCCccceEEeeCCCCc-EEE-EEecc------CCEEEEEECCCCCCCEEEEEeCCCCC--
Confidence 221 35667777654 2 45555532222 333 35421 2367776654 358877765431
Q ss_pred cceeeeeeeeCCCCCceeeEEEE
Q 001978 152 EKYIKLLFELNELPEAFMGLQME 174 (987)
Q Consensus 152 e~~~k~v~~l~~~~~~I~gi~~~ 174 (987)
...++.+..-.+ ...|.++.|.
T Consensus 323 ~~~~~~l~~~~~-~~~~~~~~~~ 344 (710)
T 2xdw_A 323 ESKWKVLVPEHE-KDVLEWVACV 344 (710)
T ss_dssp GGGCEEEECCCS-SCEEEEEEEE
T ss_pred cccceeccCCCC-CCeEEEEEEE
Confidence 113555532211 1247777764
No 491
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=36.11 E-value=2.1e+02 Score=30.47 Aligned_cols=103 Identities=10% Similarity=0.158 Sum_probs=58.3
Q ss_pred HHHhHhhHHHHHHHHHhcccHHHHHHHHhCCCCchhhHHhhHHHHHhHChH-H-------HHHHHHcCC-CCCC---Ccc
Q 001978 530 FASLKEQHEIVVHHYIQQGEAKKALQMLRKPAVPIDLQYKFAPDLIMLDAY-E-------TVESWMTTN-NLNP---RKL 597 (987)
Q Consensus 530 ~a~~~~dy~~ll~~yi~~~~~~~AL~~l~~~~~~~~li~k~~~~Ll~~~p~-~-------ti~~l~~~~-~ld~---~~l 597 (987)
|++.++.|..+..=|+..++|++|+++|.+ -+..|+++... . .|+++.+.. .++. .+|
T Consensus 29 yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 29 YYEAHQTLRTIANRYVRSKSYEHAIELISQ----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHH----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 456677788899999999999999887643 33333332221 1 123333322 2222 234
Q ss_pred hhhhhhcCCCCCCCCChHHHHHHHHHHHh----h--cCCCChhHHHHHHHHhhcCCC
Q 001978 598 IPAMMRYSSEPHAKNETHEVIKYLEFCVH----R--LHNEDPGVHNLLLSLYAKQED 648 (987)
Q Consensus 598 ip~L~~~~~~~~~~~~~~~~~~YLe~li~----~--~~~~~~~ihn~ll~Ly~~~~~ 648 (987)
+..+..+++.. + ....|+...+. . .+..++.+|..+-..|.+.++
T Consensus 99 ~~l~~~~p~~~-----~-~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~ 149 (312)
T 2wpv_A 99 VRLIAELDPSE-----P-NLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDF 149 (312)
T ss_dssp HHHHTTCCTTC-----T-THHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCC-----c-hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCC
Confidence 44444444321 1 24556666552 1 234588999999999887543
No 492
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=35.96 E-value=6.6e+02 Score=30.36 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=35.3
Q ss_pred CceeEEEEe--CCEEEEEe-cCCeEEEEeCCCCC---ceeeEcCCCCCCccceeEEEeCCCCCeEEEEee
Q 001978 22 GVITCMSAG--NDVIVLGT-SKGWLIRHDFGAGD---SYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIV 85 (987)
Q Consensus 22 ~~i~~~~v~--nn~l~~~~-~~g~l~ridl~~~~---~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~ 85 (987)
..+..+++. ++.||++- .+++|+|++++... .....+.. +......|-+|+.|.+|.++-.
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~---~l~~P~GLAvD~~~~~LY~tD~ 490 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---DIQAPDGLAVDWIHSNIYWTDS 490 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS---SCSCCCEEEEETTTTEEEEEET
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec---CCCCcceeeeeecCCcEEEEec
Confidence 346777775 45665554 56889999993221 11111211 1245577888888888877644
No 493
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=35.94 E-value=3.7e+02 Score=27.48 Aligned_cols=118 Identities=13% Similarity=0.107 Sum_probs=64.1
Q ss_pred CCceeEEEEe--CCEEEEEecCCeEEEEeC--CCCC-ceeeEcC--CCCCCccceeEEEeCCCCCeEEEEeecCCCccEE
Q 001978 21 RGVITCMSAG--NDVIVLGTSKGWLIRHDF--GAGD-SYDIDLS--AGRPGEQSIHKVFVDPGGSHCIATIVGSGGAETF 93 (987)
Q Consensus 21 ~~~i~~~~v~--nn~l~~~~~~g~l~ridl--~~~~-~~~~~l~--~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~~~ 93 (987)
.|.+.++... ++.+++.+++|.+|++.. -|.- ..-.++. ..-..+++|..++.-..+.++++.|. +|...
T Consensus 32 ~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~---~G~~K 108 (256)
T 1zvt_A 32 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASD---AGYGF 108 (256)
T ss_dssp TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBT---TSEEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeC---CCeEE
Confidence 3555554443 347899999999999965 2222 1111110 00112467888877334667888887 67766
Q ss_pred EEecC-----CCCceeccCCC-CceEEEEeecCCCCCCCCcceEEEEcCCCcEEEEEec
Q 001978 94 YTHAK-----WSKPRVLSKLK-GLVVNAVAWNRQQITEASTKEIILGTDTGQLHEMAVD 146 (987)
Q Consensus 94 Y~~~~-----~~k~k~L~klk-g~~i~sVaw~~~~~~~~st~~iLiGt~~G~i~e~~i~ 146 (987)
-+... ...-+...+++ |-.+-++...+ + ...+|++.|++|.+.-+.++
T Consensus 109 r~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~---~--~~~~i~l~T~~G~~lrf~~~ 162 (256)
T 1zvt_A 109 VCTFNDLVARNRAGKALITLPENAHVMPPVVIE---D--ASDMLLAITQAGRMLMFPVS 162 (256)
T ss_dssp EEEGGGGCCCSTTCEECBCCCTTCCBCCCEECC---C--TTCEEEEEETTSEEEEEEGG
T ss_pred EeEHHHhcccCcCceEEEEECCCCEEEEEEEec---C--CCCEEEEEcCCCeEEEEEHH
Confidence 44421 11222333333 22232222220 0 12379999999998887664
No 494
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=35.88 E-value=3.9e+02 Score=31.51 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=48.0
Q ss_pred eeEEEEeC--CEEEEEecC----CeEEEEeC-CCC-CceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecC-CCccEEE
Q 001978 24 ITCMSAGN--DVIVLGTSK----GWLIRHDF-GAG-DSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGS-GGAETFY 94 (987)
Q Consensus 24 i~~~~v~n--n~l~~~~~~----g~l~ridl-~~~-~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~-~~g~~~Y 94 (987)
..+++++. +.|++.... +.|+.+|+ .|+ ....+.-+. ...... ++|.|.++++.++.. .++..+-
T Consensus 236 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~-----~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~ 309 (693)
T 3iuj_A 236 YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL-----DADVSL-VDNKGSTLYLLTNRDAPNRRLVT 309 (693)
T ss_dssp EEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS-----SSCEEE-EEEETTEEEEEECTTCTTCEEEE
T ss_pred EEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC-----CceEEE-EeccCCEEEEEECCCCCCCEEEE
Confidence 45666654 466665542 48999999 654 344443331 222333 567788999888721 2355566
Q ss_pred EecCCCCc---eeccCCCCceEEEEeec
Q 001978 95 THAKWSKP---RVLSKLKGLVVNAVAWN 119 (987)
Q Consensus 95 ~~~~~~k~---k~L~klkg~~i~sVaw~ 119 (987)
+....... +.|..-.+..+ ++.++
T Consensus 310 ~d~~~~~~~~~~~l~~~~~~~~-~~s~~ 336 (693)
T 3iuj_A 310 VDAANPGPAHWRDLIPERQQVL-TVHSG 336 (693)
T ss_dssp EETTSCCGGGCEEEECCCSSCE-EEEEE
T ss_pred EeCCCCCccccEEEecCCCCEE-EEEEE
Confidence 66544433 44433233344 55544
No 495
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.86 E-value=4.5 Score=32.98 Aligned_cols=31 Identities=23% Similarity=0.562 Sum_probs=20.0
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLI 880 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~ 880 (987)
..+|..|+++|.. . ..++-.-|..||.+|+.
T Consensus 5 ~~~C~~C~~~I~~-----~------------~~~~~a~~~~~H~~CF~ 35 (72)
T 1x61_A 5 SSGCGGCGEDVVG-----D------------GAGVVALDRVFHVGCFV 35 (72)
T ss_dssp CCCCSSSCSCCCS-----S------------SCCEECSSSEECTTTCB
T ss_pred CCCCccCCCccCC-----C------------ceEEEECCCeEcccCCc
Confidence 4679999988876 2 23344456677777763
No 496
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=35.70 E-value=28 Score=33.46 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=38.0
Q ss_pred HHHchhhHHHHHHhcCCchh-----------HhHHH----HHHHHHHHhcCCHHHHHHHHHhhc
Q 001978 370 VYLDMKEYAAALANCRDPLQ-----------RDQVY----LVQAEAAFATKDFHRAASFYAKIN 418 (987)
Q Consensus 370 ~ll~~~~fe~Al~~~~~~~~-----------~~~V~----~~~~~~l~~~g~y~~Aa~~~~~~~ 418 (987)
.+.+.|+|++|+..+..... ....+ ...|.-|...|+|++|...|.+..
T Consensus 66 al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 66 ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 36677899999988753222 23445 788999999999999999998876
No 497
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=35.43 E-value=4.1e+02 Score=27.82 Aligned_cols=93 Identities=6% Similarity=-0.014 Sum_probs=53.2
Q ss_pred CceeEEEEeC---CEEEEEecC------CeEEEEeCCCCCceeeEcCCCCCCccceeEEEeCCCCCeEEEEeecCCCcc-
Q 001978 22 GVITCMSAGN---DVIVLGTSK------GWLIRHDFGAGDSYDIDLSAGRPGEQSIHKVFVDPGGSHCIATIVGSGGAE- 91 (987)
Q Consensus 22 ~~i~~~~v~n---n~l~~~~~~------g~l~ridl~~~~~~~~~l~~~~~~~~~i~~i~lDp~G~hlli~~~~~~~g~- 91 (987)
..+.+++.+. +.++++... ..|+++|+....... +.. ..+...+..+..+|.|.+++..+...+...
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~--l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 264 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK--IKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDR 264 (396)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE--SSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCE
T ss_pred cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE--eec-cCCCccccceEECCCCCEEEEEecCCCCccc
Confidence 3466777765 335554432 368999983333222 221 111245778889999999877765222222
Q ss_pred -EEEEecCCCCceeccCCCCceEEEEeecC
Q 001978 92 -TFYTHAKWSKPRVLSKLKGLVVNAVAWNR 120 (987)
Q Consensus 92 -~~Y~~~~~~k~k~L~klkg~~i~sVaw~~ 120 (987)
.|.+.....+.+.+..+.+. . ++|.+
T Consensus 265 ~l~~~d~~~g~~~~l~~~~~~--~-~~~s~ 291 (396)
T 3c5m_A 265 VIYKANPETLENEEVMVMPPC--S-HLMSN 291 (396)
T ss_dssp EEEEECTTTCCEEEEEECCSE--E-EEEEC
T ss_pred eEEEEECCCCCeEEeeeCCCC--C-CCccC
Confidence 55566555555666555553 2 88984
No 498
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.90 E-value=5.2 Score=32.57 Aligned_cols=31 Identities=23% Similarity=0.555 Sum_probs=20.9
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLI 880 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~ 880 (987)
..+|..|+++|.. . ..++-.-|..||.+|+.
T Consensus 5 ~~~C~~C~~~I~~-----~------------~~~~~a~~~~~H~~CF~ 35 (72)
T 1x4k_A 5 SSGCQECKKTIMP-----G------------TRKMEYKGSSWHETCFI 35 (72)
T ss_dssp CCCBSSSCCCCCS-----S------------SCEEEETTEEEETTTTC
T ss_pred CCCCccCCCcccC-----C------------ceEEEECcCeecccCCc
Confidence 4689999999886 2 23444456677777764
No 499
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.88 E-value=75 Score=29.04 Aligned_cols=34 Identities=26% Similarity=0.584 Sum_probs=23.8
Q ss_pred ccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHHHH
Q 001978 834 EDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLIAH 882 (987)
Q Consensus 834 ~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~~~ 882 (987)
..|..|++++.... | ..-.-.||++|-..|....
T Consensus 70 ~~C~~C~~~Fs~~~---R------------rHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTV---R------------RHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSS---C------------CEECTTTCCEECGGGSCEE
T ss_pred CCCcCcCCcccccc---c------------cccCCCCCeEEChHHhCCc
Confidence 57999998865421 3 3444479999999997654
No 500
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=34.66 E-value=5.3 Score=36.75 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=23.4
Q ss_pred cccccccchhhhhcccccccccccCCCCCCCCEEEEcCCChhHHHhHH
Q 001978 833 DEDCGVCRRKILVAGRDYRMARGYASVGPMAPFYVFPCGHAFHAQCLI 880 (987)
Q Consensus 833 ~~~C~~C~k~L~~~~~~~~~~~~~~~~~~~~~fvvFpCgH~fH~~CL~ 880 (987)
..+|..|+++|.. ..++-.-|..||.+|+.
T Consensus 61 ~~~C~~C~~~I~~------------------~~~v~a~~~~wH~~CF~ 90 (123)
T 2l4z_A 61 WKRCAGCGGKIAD------------------RFLLYAMDSYWHSRCLK 90 (123)
T ss_dssp CSBBSSSSSBCCS------------------SSEEEETTEEEETTTSB
T ss_pred CCcCcCCCCCcCC------------------cEEEEeCCcEEcccccC
Confidence 4689999999987 34455578889999874
Done!