BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001979
(987 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 98/226 (43%), Gaps = 38/226 (16%)
Query: 529 LDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPEN 588
+D + E+P + + + L LTL L +LP+SI+ L L+ L++ C +L E+PE
Sbjct: 111 IDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEP 169
Query: 589 LGH---------IASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWL 639
L + +L++L L T IR P++I L+NLK L
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-------------- 215
Query: 640 PFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSR-NNF 698
L P++ L L LDL C P G + L L L +N
Sbjct: 216 --------SPLSALGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNL 266
Query: 699 FSLPASINQLSRLETLNIDYCNRLKALPELPASIDGLFAHNCTSLI 744
+LP I++L++LE L++ C L LP L A + NC L+
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA----NCIILV 308
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 19/181 (10%)
Query: 579 CSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIW 638
+ L E+P+ A LE L L +R P++I L L+ELS C L
Sbjct: 113 AAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP-------ELTE 165
Query: 639 LPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNF 698
LP P A+ D+ G GL L L L ++ ++P + +L L +L + +
Sbjct: 166 LP-EPLASTDASGEH----QGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPL 218
Query: 699 FSLPASINQLSRLETLNIDYCNRLKALPEL---PASIDGLFAHNCTSLIKLCSPSNITRL 755
+L +I+ L +LE L++ C L+ P + A + L +C++L+ L P +I RL
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL--PLDIHRL 276
Query: 756 T 756
T
Sbjct: 277 T 277
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 81/206 (39%), Gaps = 40/206 (19%)
Query: 446 KFIKLSHSVHLT-------KTPD----FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKV 494
+ +LSH H T + PD F G LE L L L + SI L RL+
Sbjct: 99 QAFRLSHLQHXTIDAAGLXELPDTXQQFAG---LETLTL-ARNPLRALPASIASLNRLRE 154
Query: 495 LNMKECIRIKSFPA--------------------EIEWASLEI----VQNAKRLLQLHLD 530
L+++ C + P +EW + + N + L L +
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR 214
Query: 531 QTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLG 590
+ + + P+I L +L L LR C L + P LK L L CS L +P ++
Sbjct: 215 NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274
Query: 591 HIASLENLDLGGTA-IRRPPSTIVLL 615
+ LE LDL G + R PS I L
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 61/147 (41%), Gaps = 31/147 (21%)
Query: 422 LFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSF 481
L L + ++ + L + N+++LK +K+ +S P +PKLE L L GCT L
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN 244
Query: 482 VHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSI 541
P G LK L +K+C LL L LD I
Sbjct: 245 YPPIFGGRAPLKRLILKDC---------------------SNLLTLPLD----------I 273
Query: 542 KFLSRLTVLTLRDCKKLVSLPSSISDL 568
L++L L LR C L LPS I+ L
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 105/268 (39%), Gaps = 55/268 (20%)
Query: 502 RIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPP-SIKFLSRLTVLTLRDCKKLVS 560
R+K F W LE+V N K + P +K L RLT + +
Sbjct: 296 RVKDFSYNFGWQHLELV-NCK-----------FGQFPTLKLKSLKRLTFTSNKGGNAF-- 341
Query: 561 LPSSISDLRSLKVLNL--NGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENL 618
S DL SL+ L+L NG S ++ SL+ LDL + S + LE L
Sbjct: 342 ---SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398
Query: 619 KELSF-HGCKGQRKSWS------SLIWLPFYPRANRDSLGFFIPSLSGLHCL-------- 663
+ L F H Q +S +LI+L R + LS L L
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458
Query: 664 --------------SRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPA----SI 705
+ LDL C L++ + P SLS+L L +S NNFFSL +
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517
Query: 706 NQLSRLE-TLNIDYCNRLKALPELPASI 732
N L L+ +LN ++ + L P+S+
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSL 545
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 105/268 (39%), Gaps = 55/268 (20%)
Query: 502 RIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPP-SIKFLSRLTVLTLRDCKKLVS 560
R+K F W LE+V N K + P +K L RLT + +
Sbjct: 320 RVKDFSYNFGWQHLELV-NCK-----------FGQFPTLKLKSLKRLTFTSNKGGNAFSE 367
Query: 561 LPSSISDLRSLKVLNL--NGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENL 618
+ DL SL+ L+L NG S ++ SL+ LDL + S + LE L
Sbjct: 368 V-----DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQL 422
Query: 619 KELSF-HGCKGQRKSWS------SLIWLPFYPRANRDSLGFFIPSLSGLHCL-------- 663
+ L F H Q +S +LI+L R + LS L L
Sbjct: 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 482
Query: 664 --------------SRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPA----SI 705
+ LDL C L++ + P SLS+L L +S NNFFSL +
Sbjct: 483 ENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 541
Query: 706 NQLSRLE-TLNIDYCNRLKALPELPASI 732
N L L+ +LN ++ + L P+S+
Sbjct: 542 NSLQVLDYSLNHIMTSKKQELQHFPSSL 569
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 568 LRSLKVLNLNGCSKLEEVPENLGHI-ASLENLDLGGTAIRRPPSTIVLLENLKELSFHGC 626
+R LKVL+L+ E+PE+L ++ ASL LDL P +L NL C
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP-----ILPNL-------C 386
Query: 627 KGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLS 686
+ + + L N G P+LS L L L N G IP+ LGSLS
Sbjct: 387 QNPKNTLQELYL------QNNGFTGKIPPTLSNCSELVSLHL-SFNYLSGTIPSSLGSLS 439
Query: 687 ALTNLTLSRNNF-FSLPASINQLSRLETLNIDYCNRLKALPELPASIDGLFAHNCTSL 743
L +L L N +P + + LETL +D+ N L E+P+ + NCT+L
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDF-NDLTG--EIPSGLS-----NCTNL 489
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 537 IPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLE 596
IP I + L +L L S+P + DLR L +L+L+ +P+ + + L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 597 NLDLGGTAIRRP 608
+DL + P
Sbjct: 705 EIDLSNNNLSGP 716
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 568 LRSLKVLNLNGCSKLEEVPENLGHI-ASLENLDLGGTAIRRPPSTIVLLENLKELSFHGC 626
+R LKVL+L+ E+PE+L ++ ASL LDL P +L NL C
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP-----ILPNL-------C 389
Query: 627 KGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLS 686
+ + + L N G P+LS L L L N G IP+ LGSLS
Sbjct: 390 QNPKNTLQELYL------QNNGFTGKIPPTLSNCSELVSLHL-SFNYLSGTIPSSLGSLS 442
Query: 687 ALTNLTLSRNNF-FSLPASINQLSRLETLNIDYCNRLKALPELPASIDGLFAHNCTSL 743
L +L L N +P + + LETL +D+ N L E+P+ + NCT+L
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDF-NDLTG--EIPSGL-----SNCTNL 492
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 537 IPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLE 596
IP I + L +L L S+P + DLR L +L+L+ +P+ + + L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 597 NLDLGGTAIRRP 608
+DL + P
Sbjct: 708 EIDLSNNNLSGP 719
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 106/263 (40%), Gaps = 51/263 (19%)
Query: 507 PAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSIS 566
P+ + EI N+K L TS+ PS +RL + + KL SLP +
Sbjct: 2 PSRCSCSGTEIRCNSKGL-------TSVPTGIPSSA--TRLEL----ESNKLQSLPHGVF 48
Query: 567 D-LRSLKVLNL--NGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSF 623
D L L L+L NG S ++ SL+ LDL + S + LE L+ L F
Sbjct: 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108
Query: 624 -HGCKGQRKSWS------SLIWLPFYPRANRDSLGFFIPSLSGLHCL------------- 663
H Q +S +LI+L R + LS L L
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168
Query: 664 ---------SRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPA----SINQLSR 710
+ LDL C L++ + P SLS+L L +S NNFFSL +N L
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227
Query: 711 LE-TLNIDYCNRLKALPELPASI 732
L+ +LN ++ + L P+S+
Sbjct: 228 LDYSLNHIMTSKKQELQHFPSSL 250
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 445 LKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKV-LNMKECIRI 503
LK++ LS + +T + +F G+ +LE L F H ++ + V L+++ I +
Sbjct: 80 LKYLDLSFNGVITMSSNFLGLEQLEH--------LDFQHSNLKQMSEFSVFLSLRNLIYL 131
Query: 504 KSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEE--IPPSIKFLSRLTVLTLRDCKKLVSL 561
A I L L + S +E +P L LT L L C+
Sbjct: 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191
Query: 562 PSSISDLRSLKVLNLN 577
P++ + L SL+VLN++
Sbjct: 192 PTAFNSLSSLQVLNMS 207
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 12/148 (8%)
Query: 445 LKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKV-LNMKECIRI 503
LK++ LS + +T + +F G+ +LE L F H ++ + V L+++ I +
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEH--------LDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 504 KSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEE--IPPSIKFLSRLTVLTLRDCKKLVSL 561
A I L L + S +E +P L LT L L C+
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 562 PSSISDLRSLKVLNLNGCSKLEEVPENL 589
P++ + L SL+VLN+ ++L+ VP+ +
Sbjct: 487 PTAFNSLSSLQVLNM-ASNQLKSVPDGI 513
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 92/245 (37%), Gaps = 52/245 (21%)
Query: 502 RIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPP-SIKFLSRLTVLTLRDCKKLVS 560
R+K F W LE+V N K + P +K L RLT + +
Sbjct: 296 RVKDFSYNFGWQHLELV-NCK-----------FGQFPTLKLKSLKRLTFTSNKGGNAFSE 343
Query: 561 LPSSISDLRSLKVLNL--NGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENL 618
+ DL SL+ L+L NG S ++ SL+ LDL + S + LE L
Sbjct: 344 V-----DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398
Query: 619 KELSF-HGCKGQRKSWS------SLIWLPFYPRANRDSLGFFIPSLSGLHCL-------- 663
+ L F H Q +S +LI+L R + LS L L
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458
Query: 664 --------------SRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLS 709
+ LDL C L++ + P SLS+L L ++ N S+P I
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMASNQLKSVPDGI--FD 515
Query: 710 RLETL 714
RL +L
Sbjct: 516 RLTSL 520
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 524 LLQLHLDQTSIEEIPPSI-KFLSRLTVLTLRDCKKLVSLPSSISD-LRSLKVLNLNGCSK 581
L +L LD+ ++ +PP + L++LT L+L +L SLP + D L SLK L L ++
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSL-GYNELQSLPKGVFDKLTSLKELRLYN-NQ 168
Query: 582 LEEVPEN-LGHIASLENLDLGGTAIRR-PPSTIVLLENLKELSFH 624
L+ VPE + L+ L L ++R P LE LK L
Sbjct: 169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 30/220 (13%)
Query: 537 IPPSIKFLSRLTVLTLRDCKKLVS-LPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASL 595
IP S+ L L L + LV +P +I+ L L L + + +P+ L I +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 596 ENLDLGGTAIRRP-PSTIVLLENLKELSFHGCK---GQRKSWSSLIWLPFYPRANRDSL- 650
LD A+ P +I L NL ++F G + S+ S L +R+ L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 651 GFFIPSLSGLHCLSRLDL------GDCNLQEGAIPN-------------DLGSLSALTNL 691
G P+ + L+ L+ +DL GD ++ G+ N DLG + NL
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 692 TLS--RNN--FFSLPASINQLSRLETLNIDYCNRLKALPE 727
RNN + +LP + QL L +LN+ + N +P+
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 628 GQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEG-AIPNDLGSLS 686
G + SS WLP NR LG + + + ++ LDL NL + IP+ L +L
Sbjct: 19 GNPTTLSS--WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76
Query: 687 ALTNLTLSR-NNFFS-LPASINQLSRLETLNIDYCNRLKALPELPASIDGL----FAHNC 740
L L + NN +P +I +L++L L I + N A+P+ + I L F++N
Sbjct: 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136
Query: 741 TS 742
S
Sbjct: 137 LS 138
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 595 LENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFI 654
+ NLDL G + +P L NL L+F Y + +G
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNF-----------------LYIGGINNLVGPIP 94
Query: 655 PSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFF-SLPASINQLSRLET 713
P+++ L L L + N+ GAIP+ L + L L S N +LP SI+ L L
Sbjct: 95 PAIAKLTQLHYLYITHTNV-SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153
Query: 714 LNIDYCNRLKALPELPASIDGLFA 737
+ D A+P+ S LF
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFT 177
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 120/280 (42%), Gaps = 49/280 (17%)
Query: 348 NEVCKAVEGIICLQPSKGVKLNPESFSRMKNLRLLK---IRDVCLRHGIEYLPDELRLLK 404
N + +EG+ L K + LN SF ++ + +RD+ Y+ +R L
Sbjct: 290 NGLPSGIEGMNSL---KKLVLNANSFDQLCQINAASFPSLRDL-------YIKGNMRKLD 339
Query: 405 WHGYPLRSLPSNFQPERLFKLNICYSLVEQ---LWQGVQNMRHLKFIKLSHSVHLT-KTP 460
L L E L KL++ +S +E ++N+RHL+++ LS++ L +
Sbjct: 340 LGTRCLEKL------ENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQ 393
Query: 461 DFTGVPKLERLVLDGCTNLSFVHPSIGL-------LKRLKVLNMKECIRIKSFPAEIEWA 513
F P+LE L +++F H + L L+VLN+ C+ ++ +
Sbjct: 394 AFKECPQLELL------DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCL--------LDTS 439
Query: 514 SLEIVQNAKRLLQLHLDQTSIEEIPPS----IKFLSRLTVLTLRDCKKLVSLPSSISDLR 569
+ ++ + L L+L S ++ S ++ + L +L L C L + LR
Sbjct: 440 NQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLR 499
Query: 570 SLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPP 609
++ L+L+ S + + L H+ L L++ IR P
Sbjct: 500 NVNHLDLSHNSLTGDSMDALSHLKGLY-LNMASNNIRIIP 538
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGS 65
E I+GI G GIGKTT AR + I+ D+GS
Sbjct: 293 EGEIIGILGPNGIGKTTFARILVGEIT--ADEGS 324
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 35 ILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRG 79
ILG+ G G+GKTT+ + + I F D +S + + + RG
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRG 71
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 31/184 (16%)
Query: 540 SIKFLSRLTVLTLRDCKKLVSLPS-SISDLRSLKVLNLNGCSKLEEVPEN-LGHIASLEN 597
+ ++LS+L L LR+ + S+PS + + + SL+ L+L +LE + E + +L
Sbjct: 102 AFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRY 160
Query: 598 LDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIP-S 656
L+LG ++ P+ L+ L+EL G + L P S
Sbjct: 161 LNLGMCNLKDIPNLTALVR-LEELELSG----------------------NRLDLIRPGS 197
Query: 657 LSGLHCLSRLDLGDCNLQEGAIP-NDLGSLSALTNLTLSRNNFFSLPASI-NQLSRLETL 714
GL L +L L + Q I N L +L L LS NN SLP + L RLE +
Sbjct: 198 FQGLTSLRKLWL--MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERV 255
Query: 715 NIDY 718
++++
Sbjct: 256 HLNH 259
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 666 LDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCNRLKAL 725
LDL NLQ I ++ LT L L+ N+ LPA I LS L L++ + NRL +L
Sbjct: 229 LDL--SNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSL 285
Query: 726 P 726
P
Sbjct: 286 P 286
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 660 LHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYC 719
++ S L L NL ++P++L +T L +++N SLP L L D C
Sbjct: 58 INQFSELQLNRLNL--SSLPDNLPP--QITVLEITQNALISLPELPASLEYL-----DAC 108
Query: 720 -NRLKALPELPASIDGLFAHN 739
NRL LPELPAS+ L N
Sbjct: 109 DNRLSTLPELPASLKHLDVDN 129
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 523 RLLQLHLDQTSIEEIPPSI-KFLSRLTVLTLRDCKKLVSLP-SSISDLRSLKVLNLNGCS 580
RL LHLD+ ++E+ P + + L+ L L L+D L +LP + DL +L L L+G +
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHG-N 163
Query: 581 KLEEVPE 587
++ VPE
Sbjct: 164 RISSVPE 170
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 523 RLLQLHLDQTSIEEIPPSI-KFLSRLTVLTLRDCKKLVSLP-SSISDLRSLKVLNLNGCS 580
RL LHLD+ ++E+ P + + L+ L L L+D L +LP + DL +L L L+G +
Sbjct: 105 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHG-N 162
Query: 581 KLEEVPE 587
++ VPE
Sbjct: 163 RISSVPE 169
>pdb|1W5S|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp
Form)
pdb|1W5S|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp
Form)
pdb|1W5T|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein
(Adpnp-Adp Complexes)
pdb|1W5T|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein
(Adpnp-Adp Complexes)
pdb|1W5T|C Chain C, Structure Of The Aeropyrum Pernix Orc2 Protein
(Adpnp-Adp Complexes)
Length = 412
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 19 LEQIYL---MLGTGLDEAR-ILGICGMGGIGKTTLARFVFDNIS 58
L +IYL + G GL + I G G GIGKTTLA+F +S
Sbjct: 34 LARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 12/163 (7%)
Query: 462 FTGVPKLERLVLDGCTNLSFVHP-SIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQN 520
F+ +PKL + ++ NL +++P + L L+ L + IK P + SL+
Sbjct: 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL-LISNTGIKHLPDVHKIHSLQ---- 129
Query: 521 AKRLLQLHLDQTSIEEIP-PSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGC 579
K LL + D +I I S LS +V+ + + + +S + L LNL+
Sbjct: 130 -KVLLDIQ-DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187
Query: 580 SKLEEVPENLGHIASLEN-LDLGGTAIRRPPSTIVLLENLKEL 621
+ LEE+P ++ H AS LD+ T I PS LENLK+L
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKL 228
>pdb|4EX4|A Chain A, The Structure Of Glcb From Mycobacterium Leprae
pdb|4EX4|B Chain B, The Structure Of Glcb From Mycobacterium Leprae
Length = 735
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 833 NSF-MGLAFCTAFSIHQHSSFLSHVSAPSNTLYLELVLEINGWHRHSVSISFDVNSLAQF 891
NSF G+A A Q+ S L+ EL +I+ WHRH V FDV++ QF
Sbjct: 37 NSFWSGVAKVVADLTPQNQSLLNSRD--------ELQAQIDKWHRHRVIEPFDVDAYRQF 88
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 37/236 (15%)
Query: 38 ICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTR----GLVALQEQLVSEILL 93
I GM G GK+ LA + S F V VS + GL+ + L + +
Sbjct: 158 IHGMAGCGKSVLAAEAVRDHSLL---EGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQ 214
Query: 94 DKNVKI---WDVHKGCHMIRIKL--RHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRII 148
D++ ++ + +RI + +H R LL++DDV + L+A Q +I+
Sbjct: 215 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQ-------CQIL 267
Query: 149 ITTRDRHLLVRCDVEDTYMVEK--------LNYNEALHLFSWKAFRKGHPTDGYFELSHS 200
+TTRD+ V D+ M K L + L + S F D E +HS
Sbjct: 268 LTTRDK------SVTDSVMGPKYVVPVESSLGKEKGLEILS--LFVNMKKAD-LPEQAHS 318
Query: 201 MVNYADGLPLALEILGSFLFARSKAEWKDALDRLKYVPDQKIFEILKISYDGLQET 256
++ G PL + ++G+ L W+ L +L+ ++I + Y+ L E
Sbjct: 319 IIKECKGSPLVVSLIGA-LLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEA 373
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 111/268 (41%), Gaps = 54/268 (20%)
Query: 476 CTNLSFVHPSIGLLKRLKVLNMKE----CIRIKSFPAEIEWASLEIVQNAKRLLQ----- 526
CT + + LN++E IR +F LEI+Q +K L++
Sbjct: 21 CTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFK---HLRHLEILQLSKNLVRKIEVG 77
Query: 527 ----------LHLDQTSIEEIPP-SIKFLSRLTVLTLRDCKKLVSLPS-SISDLRSLKVL 574
L L + +P + ++LS+L L LR+ + S+PS + + + SL+ L
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLRRL 136
Query: 575 NLNGCSKLEEVPEN-LGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSW 633
+L +LE + E + +L L+LG ++ P+ L+ L+EL G
Sbjct: 137 DLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVR-LEELELSG-------- 187
Query: 634 SSLIWLPFYPRANRDSLGFFIP-SLSGLHCLSRLDLGDCNLQEGAIP-NDLGSLSALTNL 691
+ L P S GL L +L L + Q I N L +L L
Sbjct: 188 --------------NRLDLIRPGSFQGLTSLRKLWL--MHAQVATIERNAFDDLKSLEEL 231
Query: 692 TLSRNNFFSLPASI-NQLSRLETLNIDY 718
LS NN SLP + L RLE +++++
Sbjct: 232 NLSHNNLMSLPHDLFTPLHRLERVHLNH 259
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 14 GMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVRE 73
G+D E +Y + R + + G+ G GKTT+A V D +F + +F +
Sbjct: 10 GVDLGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENI 69
Query: 74 VSQTRGL 80
+ RG+
Sbjct: 70 ATMQRGI 76
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 100/235 (42%), Gaps = 35/235 (14%)
Query: 38 ICGMGGIGKTTLARFVFDNISYQ---FDDGSSFLANVREVSQTRGLVALQEQLVSEILLD 94
I GM G GK+ LA + S F G +++ ++ GL+ + L + + D
Sbjct: 152 IHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ--DKSGLLMKLQNLCTRLDQD 209
Query: 95 KNVKI---WDVHKGCHMIRIKL--RHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIII 149
++ ++ + +RI + +H R LL++DDV + L+A Q +I++
Sbjct: 210 ESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQ-------CQILL 262
Query: 150 TTRDRHLLVRCDVEDTYMVEK--------LNYNEALHLFSWKAFRKGHPTDGYFELSHSM 201
TTRD+ V D+ M K L + L + S F D E +HS+
Sbjct: 263 TTRDK------SVTDSVMGPKYVVPVESSLGKEKGLEILS--LFVNMKKAD-LPEQAHSI 313
Query: 202 VNYADGLPLALEILGSFLFARSKAEWKDALDRLKYVPDQKIFEILKISYDGLQET 256
+ G PL + ++G+ L W+ L +L+ ++I + Y+ L E
Sbjct: 314 IKECKGSPLVVSLIGA-LLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEA 367
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 663 LSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCNRL 722
L++L+L C L + + G+L L L LS N SLP L L L++ + NRL
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRL 112
Query: 723 KALP 726
+LP
Sbjct: 113 TSLP 116
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 663 LSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCNRL 722
L++L+L C L + + G+L L L LS N SLP L L L++ + NRL
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRL 112
Query: 723 KALP 726
+LP
Sbjct: 113 TSLP 116
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 663 LSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCNRL 722
L++L+L C L + + G+L L L LS N SLP L L L++ + NRL
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRL 112
Query: 723 KALP 726
+LP
Sbjct: 113 TSLP 116
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 663 LSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCNRL 722
L++L+L C L + + G+L L L LS N SLP L L L++ + NRL
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRL 112
Query: 723 KALP 726
+LP
Sbjct: 113 TSLP 116
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 663 LSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCNRL 722
L++L+L C L + + G+L L L LS N SLP L L L++ + NRL
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRL 112
Query: 723 KALP 726
+LP
Sbjct: 113 TSLP 116
>pdb|3N6H|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z Complexed With MagnesiumSULFATE
pdb|3N6H|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z Complexed With MagnesiumSULFATE
pdb|3N6H|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z Complexed With MagnesiumSULFATE
pdb|3N6H|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z Complexed With MagnesiumSULFATE
pdb|3N6J|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z
pdb|3N6J|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z
pdb|3N6J|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z
pdb|3N6J|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Actinobacillus Succinogenes
130z
pdb|3PFR|A Chain A, Crystal Structure Of D-Glucarate Dehydratase Related
Protein From Actinobacillus Succinogenes Complexed With
D-Glucarate
pdb|3PFR|B Chain B, Crystal Structure Of D-Glucarate Dehydratase Related
Protein From Actinobacillus Succinogenes Complexed With
D-Glucarate
pdb|3PFR|C Chain C, Crystal Structure Of D-Glucarate Dehydratase Related
Protein From Actinobacillus Succinogenes Complexed With
D-Glucarate
pdb|3PFR|D Chain D, Crystal Structure Of D-Glucarate Dehydratase Related
Protein From Actinobacillus Succinogenes Complexed With
D-Glucarate
Length = 455
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 321 VRQQSPGNPGQRSRLWLWMDISRVLTKNEVCKAVEGIICL--QPSKGVKLNPESFSRMKN 378
V +PGNP W+W + LTKN + + +G I L +P G++LN ++ +
Sbjct: 355 VGAAAPGNPTALDTHWIWQEGDFYLTKNPL-EIKDGKIKLNDKPGLGIELNXDNVLKAHE 413
Query: 379 L 379
L
Sbjct: 414 L 414
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 663 LSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCNRL 722
L++L+L C L + + G+L L L LS N SLP L L L++ + NRL
Sbjct: 57 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRL 112
Query: 723 KALP 726
+LP
Sbjct: 113 TSLP 116
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 663 LSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCNRL 722
L++L+L C L + + G+L L L LS N SLP L L L++ + NRL
Sbjct: 58 LTQLNLDRCELTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-NRL 113
Query: 723 KALP 726
+LP
Sbjct: 114 TSLP 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,375,788
Number of Sequences: 62578
Number of extensions: 1162144
Number of successful extensions: 2409
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 2303
Number of HSP's gapped (non-prelim): 137
length of query: 987
length of database: 14,973,337
effective HSP length: 108
effective length of query: 879
effective length of database: 8,214,913
effective search space: 7220908527
effective search space used: 7220908527
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)