Query 001979
Match_columns 987
No_of_seqs 708 out of 5499
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 13:45:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 9E-101 2E-105 971.6 79.1 858 3-942 177-1099(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1E-59 2.2E-64 564.0 33.3 305 13-324 161-498 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 5.3E-38 1.2E-42 342.7 15.8 269 15-288 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 5E-30 1.1E-34 327.1 27.9 404 328-741 43-486 (968)
5 PLN00113 leucine-rich repeat r 100.0 4E-29 8.7E-34 318.8 24.8 370 367-746 108-515 (968)
6 KOG0444 Cytoskeletal regulator 99.9 2.1E-28 4.6E-33 263.6 -4.0 362 379-751 9-383 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 2.2E-27 4.8E-32 255.8 -3.9 329 365-727 43-380 (1255)
8 KOG4194 Membrane glycoprotein 99.9 1.4E-26 3.1E-31 248.6 2.0 338 380-727 55-409 (873)
9 PLN03210 Resistant to P. syrin 99.9 5.6E-23 1.2E-27 262.0 26.5 315 371-726 582-910 (1153)
10 KOG4194 Membrane glycoprotein 99.9 3.6E-25 7.8E-30 237.9 4.6 332 359-720 83-427 (873)
11 KOG0472 Leucine-rich repeat pr 99.9 1.5E-25 3.2E-30 231.1 -8.2 248 366-627 57-308 (565)
12 KOG0472 Leucine-rich repeat pr 99.9 1.3E-24 2.7E-29 224.2 -8.3 341 370-747 84-534 (565)
13 KOG0618 Serine/threonine phosp 99.9 5.9E-24 1.3E-28 241.1 -6.9 390 370-767 38-488 (1081)
14 PRK15387 E3 ubiquitin-protein 99.7 4.3E-17 9.2E-22 192.7 19.1 254 379-720 203-456 (788)
15 PRK15387 E3 ubiquitin-protein 99.7 3.8E-17 8.1E-22 193.2 18.6 243 377-705 222-465 (788)
16 KOG0618 Serine/threonine phosp 99.7 5.9E-19 1.3E-23 200.9 -2.7 311 373-718 195-509 (1081)
17 PRK15370 E3 ubiquitin-protein 99.7 1.9E-16 4.2E-21 188.7 13.9 76 378-456 179-254 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 4.5E-16 9.8E-21 185.5 14.5 246 398-699 178-428 (754)
19 KOG4237 Extracellular matrix p 99.5 1.7E-15 3.6E-20 157.4 1.2 241 386-627 55-357 (498)
20 KOG0617 Ras suppressor protein 99.5 7.1E-16 1.5E-20 141.8 -3.1 171 410-614 23-194 (264)
21 KOG0617 Ras suppressor protein 99.5 1.9E-15 4.1E-20 139.1 -3.3 59 678-740 142-200 (264)
22 PRK04841 transcriptional regul 99.5 4.2E-12 9.2E-17 161.7 25.9 295 5-324 9-335 (903)
23 KOG4237 Extracellular matrix p 99.5 2.8E-15 6.1E-20 155.7 -3.3 145 403-556 51-199 (498)
24 cd00116 LRR_RI Leucine-rich re 99.4 1.7E-14 3.7E-19 160.2 -1.0 180 524-719 110-317 (319)
25 cd00116 LRR_RI Leucine-rich re 99.4 5.7E-14 1.2E-18 156.0 -0.8 240 462-720 19-289 (319)
26 PRK00411 cdc6 cell division co 99.3 1E-10 2.2E-15 133.7 22.1 249 7-267 27-308 (394)
27 TIGR02928 orc1/cdc6 family rep 99.2 1E-09 2.2E-14 124.1 23.8 250 7-267 12-300 (365)
28 TIGR00635 ruvB Holliday juncti 99.2 2.5E-10 5.4E-15 125.5 14.6 270 10-303 4-289 (305)
29 PRK00080 ruvB Holliday junctio 99.2 3.8E-10 8.2E-15 124.7 14.7 258 6-303 21-310 (328)
30 COG2909 MalT ATP-dependent tra 99.1 1.4E-09 3E-14 125.3 19.1 297 5-326 14-343 (894)
31 KOG4658 Apoptotic ATPase [Sign 99.1 7.1E-11 1.5E-15 143.6 8.4 248 398-679 523-788 (889)
32 PF01637 Arch_ATPase: Archaeal 99.1 2.6E-10 5.7E-15 120.3 11.1 197 12-214 1-233 (234)
33 PF05729 NACHT: NACHT domain 99.0 1.8E-09 3.9E-14 107.1 12.6 143 34-184 1-163 (166)
34 TIGR03015 pepcterm_ATPase puta 99.0 2.2E-08 4.7E-13 108.0 20.1 178 33-219 43-242 (269)
35 COG2256 MGS1 ATPase related to 99.0 5.3E-09 1.2E-13 110.9 13.9 170 10-211 24-208 (436)
36 COG3899 Predicted ATPase [Gene 99.0 4.7E-09 1E-13 128.5 15.7 308 11-323 1-388 (849)
37 KOG0532 Leucine-rich repeat (L 98.9 5.1E-11 1.1E-15 129.9 -5.4 188 402-626 79-270 (722)
38 KOG0532 Leucine-rich repeat (L 98.9 1.8E-10 4E-15 125.7 -1.3 190 493-719 78-270 (722)
39 PRK06893 DNA replication initi 98.9 3.2E-08 6.9E-13 103.1 15.4 177 6-216 12-204 (229)
40 KOG3207 Beta-tubulin folding c 98.9 4.6E-10 1E-14 119.1 1.2 208 463-719 118-336 (505)
41 PTZ00112 origin recognition co 98.9 7.5E-08 1.6E-12 111.9 18.1 245 7-265 752-1030(1164)
42 PRK13342 recombination factor 98.8 3.6E-07 7.9E-12 104.2 21.1 178 7-217 9-198 (413)
43 COG3903 Predicted ATPase [Gene 98.8 6.6E-09 1.4E-13 111.1 6.1 279 32-322 13-315 (414)
44 KOG1259 Nischarin, modulator o 98.8 2.2E-09 4.9E-14 108.1 2.4 170 375-556 212-410 (490)
45 KOG1909 Ran GTPase-activating 98.8 9.8E-10 2.1E-14 113.8 -0.7 239 464-720 28-309 (382)
46 KOG3207 Beta-tubulin folding c 98.8 1.7E-09 3.7E-14 114.9 1.1 216 438-699 116-339 (505)
47 COG4886 Leucine-rich repeat (L 98.8 1.3E-08 2.8E-13 116.5 8.1 192 425-629 98-290 (394)
48 KOG1259 Nischarin, modulator o 98.7 2E-09 4.4E-14 108.4 0.1 83 519-627 281-363 (490)
49 COG4886 Leucine-rich repeat (L 98.7 2E-08 4.3E-13 114.9 8.2 195 381-587 97-295 (394)
50 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.7E-07 5.8E-12 96.7 14.9 174 9-217 14-203 (226)
51 PLN03025 replication factor C 98.7 1.8E-06 3.9E-11 95.0 21.0 184 6-212 9-197 (319)
52 PRK14949 DNA polymerase III su 98.6 2.4E-06 5.3E-11 101.5 22.4 187 7-215 13-220 (944)
53 KOG1909 Ran GTPase-activating 98.6 3.2E-09 7E-14 110.0 -1.5 188 437-628 86-310 (382)
54 PF14580 LRR_9: Leucine-rich r 98.6 2.8E-08 6E-13 97.1 4.6 117 410-536 9-127 (175)
55 PRK12402 replication factor C 98.6 7.2E-07 1.6E-11 99.7 16.8 201 7-214 12-225 (337)
56 TIGR01242 26Sp45 26S proteasom 98.6 3.6E-07 7.8E-12 102.6 14.3 173 9-209 121-328 (364)
57 PRK14961 DNA polymerase III su 98.6 1.8E-06 3.8E-11 96.7 19.6 192 6-213 12-218 (363)
58 PRK04195 replication factor C 98.6 1.6E-06 3.4E-11 101.1 19.5 215 6-251 10-239 (482)
59 PRK07003 DNA polymerase III su 98.6 2.7E-06 5.8E-11 99.2 20.7 194 6-214 12-220 (830)
60 PRK14960 DNA polymerase III su 98.6 4.3E-06 9.4E-11 96.5 21.9 195 6-213 11-217 (702)
61 PF05496 RuvB_N: Holliday junc 98.6 6.2E-07 1.3E-11 89.4 13.1 178 7-218 21-224 (233)
62 PRK14963 DNA polymerase III su 98.6 4.2E-07 9E-12 104.8 13.6 191 6-212 10-214 (504)
63 COG1474 CDC6 Cdc6-related prot 98.6 1.4E-06 3.1E-11 96.2 16.4 194 6-207 13-229 (366)
64 PRK14962 DNA polymerase III su 98.5 8.1E-06 1.8E-10 93.5 22.0 186 6-217 10-221 (472)
65 PRK08727 hypothetical protein; 98.5 1.8E-06 3.9E-11 90.2 15.1 169 9-212 18-201 (233)
66 PRK15386 type III secretion pr 98.5 6E-07 1.3E-11 98.3 11.6 75 518-603 48-122 (426)
67 PRK14956 DNA polymerase III su 98.5 3.7E-06 8E-11 94.5 18.1 194 7-211 15-218 (484)
68 PRK08903 DnaA regulatory inact 98.5 1.5E-06 3.2E-11 91.0 14.2 175 7-219 15-203 (227)
69 PRK12323 DNA polymerase III su 98.5 5.8E-06 1.2E-10 95.2 19.5 202 6-215 12-225 (700)
70 PF13173 AAA_14: AAA domain 98.5 4.1E-07 8.8E-12 85.5 8.4 119 34-176 3-127 (128)
71 cd00009 AAA The AAA+ (ATPases 98.5 1.7E-06 3.7E-11 83.6 13.0 123 13-155 1-131 (151)
72 PRK07471 DNA polymerase III su 98.5 1.2E-05 2.6E-10 89.2 21.0 200 5-216 14-239 (365)
73 PRK00440 rfc replication facto 98.5 1.1E-05 2.4E-10 89.4 20.4 181 9-213 16-201 (319)
74 TIGR02397 dnaX_nterm DNA polym 98.5 1.1E-05 2.3E-10 91.0 20.5 185 6-216 10-219 (355)
75 PRK14957 DNA polymerase III su 98.4 7.1E-06 1.5E-10 94.8 18.4 183 7-215 13-221 (546)
76 PF13401 AAA_22: AAA domain; P 98.4 1.1E-06 2.4E-11 83.2 10.0 114 33-153 4-125 (131)
77 PRK08691 DNA polymerase III su 98.4 1.2E-05 2.6E-10 93.9 20.1 197 6-215 12-220 (709)
78 PF14580 LRR_9: Leucine-rich r 98.4 1.3E-07 2.7E-12 92.6 3.2 81 419-500 41-123 (175)
79 PRK05564 DNA polymerase III su 98.4 3.9E-06 8.5E-11 92.2 15.3 178 10-215 4-190 (313)
80 KOG2120 SCF ubiquitin ligase, 98.4 6E-09 1.3E-13 105.2 -6.2 175 421-603 186-373 (419)
81 PRK05642 DNA replication initi 98.4 6.6E-06 1.4E-10 86.0 16.1 150 34-216 46-209 (234)
82 PF13191 AAA_16: AAA ATPase do 98.4 8.5E-07 1.8E-11 89.6 9.2 50 11-60 1-51 (185)
83 PRK07994 DNA polymerase III su 98.4 6.3E-06 1.4E-10 96.7 17.4 197 6-215 12-220 (647)
84 PRK14951 DNA polymerase III su 98.4 3.1E-05 6.6E-10 90.9 22.5 195 7-214 13-224 (618)
85 PRK09087 hypothetical protein; 98.4 6.6E-06 1.4E-10 85.2 15.1 139 33-215 44-195 (226)
86 PRK06645 DNA polymerase III su 98.4 9.7E-06 2.1E-10 93.1 17.6 194 6-212 17-226 (507)
87 PRK08084 DNA replication initi 98.4 6.4E-06 1.4E-10 86.2 14.9 172 10-216 22-210 (235)
88 PRK03992 proteasome-activating 98.4 3.2E-06 7E-11 95.2 13.3 172 9-209 130-337 (389)
89 PRK15386 type III secretion pr 98.4 1.5E-06 3.3E-11 95.2 10.1 64 541-610 48-112 (426)
90 KOG2028 ATPase related to the 98.4 3E-06 6.5E-11 88.3 11.5 173 10-210 138-331 (554)
91 PRK13341 recombination factor 98.4 7.1E-06 1.5E-10 98.4 16.4 173 7-212 25-214 (725)
92 PRK05896 DNA polymerase III su 98.4 2.6E-05 5.6E-10 90.3 20.2 189 6-210 12-215 (605)
93 PRK14964 DNA polymerase III su 98.3 1.1E-05 2.4E-10 91.8 16.9 182 6-212 9-214 (491)
94 PRK14958 DNA polymerase III su 98.3 2E-05 4.4E-10 91.3 19.3 184 6-214 12-219 (509)
95 PF00308 Bac_DnaA: Bacterial d 98.3 1.7E-05 3.7E-10 81.8 16.4 182 10-214 8-207 (219)
96 PTZ00202 tuzin; Provisional 98.3 5E-05 1.1E-09 82.8 20.0 167 4-184 256-434 (550)
97 PRK09112 DNA polymerase III su 98.3 1.1E-05 2.3E-10 89.0 15.6 198 5-216 18-241 (351)
98 PRK07940 DNA polymerase III su 98.3 1.5E-05 3.2E-10 89.2 16.6 186 9-215 4-213 (394)
99 TIGR00678 holB DNA polymerase 98.3 2.3E-05 5E-10 79.3 16.3 89 115-211 95-187 (188)
100 PF14516 AAA_35: AAA-like doma 98.3 0.00024 5.3E-09 78.3 25.4 209 4-222 5-246 (331)
101 PRK14952 DNA polymerase III su 98.3 4.2E-05 9.1E-10 89.4 19.9 192 6-210 9-214 (584)
102 KOG2120 SCF ubiquitin ligase, 98.3 1.5E-08 3.2E-13 102.5 -7.6 178 524-719 187-373 (419)
103 PRK14087 dnaA chromosomal repl 98.3 4E-05 8.6E-10 87.8 18.8 165 34-217 142-321 (450)
104 PRK14959 DNA polymerase III su 98.2 5.3E-05 1.2E-09 88.2 19.6 196 7-219 13-225 (624)
105 PRK07764 DNA polymerase III su 98.2 3.4E-05 7.4E-10 93.8 18.8 189 7-213 12-219 (824)
106 PRK14955 DNA polymerase III su 98.2 4.8E-05 1E-09 86.3 19.0 199 6-214 12-227 (397)
107 PRK14969 DNA polymerase III su 98.2 1.5E-05 3.3E-10 92.9 15.3 193 6-212 12-217 (527)
108 PRK09111 DNA polymerase III su 98.2 5.3E-05 1.2E-09 89.1 19.7 195 7-215 21-233 (598)
109 PLN03150 hypothetical protein; 98.2 2.1E-06 4.5E-11 103.0 8.2 86 519-604 439-526 (623)
110 KOG4341 F-box protein containi 98.2 3.6E-08 7.9E-13 104.5 -5.9 62 443-504 138-204 (483)
111 PLN03150 hypothetical protein; 98.2 2.5E-06 5.5E-11 102.3 8.2 105 523-627 419-526 (623)
112 PRK14970 DNA polymerase III su 98.2 8.5E-05 1.8E-09 83.8 20.0 183 6-213 13-207 (367)
113 KOG0531 Protein phosphatase 1, 98.2 2E-07 4.4E-12 106.8 -1.4 125 419-555 71-196 (414)
114 PHA02544 44 clamp loader, smal 98.2 2.4E-05 5.2E-10 86.5 14.6 150 6-182 17-171 (316)
115 KOG0989 Replication factor C, 98.2 3.4E-05 7.3E-10 79.5 13.7 188 7-216 33-232 (346)
116 PRK14950 DNA polymerase III su 98.1 5.8E-05 1.2E-09 89.8 17.9 197 7-216 13-222 (585)
117 KOG4341 F-box protein containi 98.1 8.1E-08 1.7E-12 101.9 -5.6 139 439-583 160-308 (483)
118 PTZ00454 26S protease regulato 98.1 3.6E-05 7.8E-10 86.3 15.0 173 9-209 144-351 (398)
119 PRK06305 DNA polymerase III su 98.1 9.2E-05 2E-09 84.8 18.6 196 7-211 14-218 (451)
120 PRK08451 DNA polymerase III su 98.1 8.7E-05 1.9E-09 85.5 18.2 189 6-215 10-218 (535)
121 PTZ00361 26 proteosome regulat 98.1 9.6E-06 2.1E-10 91.4 10.2 154 9-186 182-369 (438)
122 PRK07133 DNA polymerase III su 98.1 7E-05 1.5E-09 88.6 17.5 194 6-212 14-216 (725)
123 TIGR00362 DnaA chromosomal rep 98.1 0.00022 4.7E-09 81.6 21.3 158 33-213 136-308 (405)
124 PRK14953 DNA polymerase III su 98.1 0.00041 8.8E-09 80.1 23.2 195 7-216 13-221 (486)
125 TIGR02881 spore_V_K stage V sp 98.1 2.2E-05 4.7E-10 83.8 12.1 153 10-185 6-192 (261)
126 TIGR02639 ClpA ATP-dependent C 98.1 3.8E-05 8.3E-10 94.0 15.7 155 7-184 179-358 (731)
127 PRK14954 DNA polymerase III su 98.1 0.00016 3.4E-09 85.3 19.8 194 7-210 13-223 (620)
128 TIGR03345 VI_ClpV1 type VI sec 98.1 4.4E-05 9.4E-10 94.2 15.4 180 7-209 184-390 (852)
129 PRK14088 dnaA chromosomal repl 98.1 0.00012 2.6E-09 83.8 17.5 159 33-213 130-303 (440)
130 PRK06647 DNA polymerase III su 98.1 0.00047 1E-08 80.9 22.6 201 6-215 12-220 (563)
131 TIGR03689 pup_AAA proteasome A 98.0 3.5E-05 7.7E-10 88.1 12.7 161 9-184 181-378 (512)
132 PRK14971 DNA polymerase III su 98.0 0.00062 1.3E-08 80.9 23.6 180 7-212 14-219 (614)
133 PRK14948 DNA polymerase III su 98.0 0.00023 5.1E-09 84.4 19.9 198 7-216 13-223 (620)
134 PF05673 DUF815: Protein of un 98.0 0.0002 4.3E-09 72.8 16.3 55 6-60 23-79 (249)
135 PRK00149 dnaA chromosomal repl 98.0 0.00015 3.3E-09 83.9 17.0 158 33-213 148-320 (450)
136 PRK06620 hypothetical protein; 98.0 8.1E-05 1.7E-09 76.4 13.0 134 34-213 45-187 (214)
137 KOG1859 Leucine-rich repeat pr 98.0 1.8E-07 3.9E-12 105.4 -7.3 172 372-556 104-290 (1096)
138 COG2255 RuvB Holliday junction 98.0 0.00013 2.7E-09 74.6 13.4 259 6-303 22-311 (332)
139 TIGR01241 FtsH_fam ATP-depende 98.0 0.00012 2.7E-09 85.6 15.7 174 9-209 54-260 (495)
140 TIGR02903 spore_lon_C ATP-depe 98.0 0.00011 2.3E-09 87.7 15.2 50 6-57 150-199 (615)
141 KOG0991 Replication factor C, 98.0 5.9E-05 1.3E-09 74.2 10.5 101 7-129 24-126 (333)
142 CHL00176 ftsH cell division pr 97.9 0.00011 2.4E-09 87.1 15.0 172 9-207 182-386 (638)
143 PF13855 LRR_8: Leucine rich r 97.9 8.8E-06 1.9E-10 65.1 3.9 58 523-580 2-60 (61)
144 CHL00095 clpC Clp protease ATP 97.9 5.5E-05 1.2E-09 93.8 12.6 154 9-183 178-353 (821)
145 TIGR02880 cbbX_cfxQ probable R 97.9 0.00018 3.8E-09 77.5 14.6 154 11-185 23-209 (284)
146 PRK09376 rho transcription ter 97.9 2E-05 4.4E-10 85.6 7.1 94 32-128 168-268 (416)
147 PRK05563 DNA polymerase III su 97.9 0.00046 1E-08 81.3 18.8 193 6-213 12-218 (559)
148 KOG2543 Origin recognition com 97.9 0.00037 8E-09 74.1 15.7 168 8-183 4-192 (438)
149 PRK14086 dnaA chromosomal repl 97.9 0.00024 5.2E-09 82.5 15.8 156 34-212 315-485 (617)
150 cd01128 rho_factor Transcripti 97.9 1.5E-05 3.3E-10 83.1 5.6 94 32-128 15-115 (249)
151 CHL00181 cbbX CbbX; Provisiona 97.9 0.00025 5.5E-09 76.2 15.0 156 10-186 23-211 (287)
152 KOG0531 Protein phosphatase 1, 97.9 2.6E-06 5.6E-11 97.7 -0.5 31 688-718 234-264 (414)
153 PRK07399 DNA polymerase III su 97.9 0.00084 1.8E-08 73.1 18.8 194 10-216 4-222 (314)
154 PRK12422 chromosomal replicati 97.9 0.0002 4.4E-09 81.7 14.6 152 34-209 142-307 (445)
155 KOG2982 Uncharacterized conser 97.8 8.8E-06 1.9E-10 82.8 2.9 208 519-747 68-285 (418)
156 KOG2227 Pre-initiation complex 97.8 0.00029 6.4E-09 76.8 14.5 174 7-185 147-339 (529)
157 PRK10865 protein disaggregatio 97.8 0.00017 3.6E-09 89.4 14.4 156 7-184 175-354 (857)
158 COG1222 RPT1 ATP-dependent 26S 97.8 0.00029 6.4E-09 74.3 13.8 172 9-209 150-357 (406)
159 PRK14965 DNA polymerase III su 97.8 0.00036 7.9E-09 82.6 16.3 191 6-215 12-221 (576)
160 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00029 6.2E-09 87.8 15.8 155 8-184 171-349 (852)
161 PF13855 LRR_8: Leucine rich r 97.8 2.1E-05 4.6E-10 62.9 3.8 59 546-604 2-60 (61)
162 PRK11034 clpA ATP-dependent Cl 97.7 0.00029 6.2E-09 85.3 13.1 155 9-184 185-362 (758)
163 PRK08116 hypothetical protein; 97.7 0.00017 3.6E-09 76.8 9.8 102 34-154 115-221 (268)
164 PRK05707 DNA polymerase III su 97.7 0.0011 2.4E-08 72.5 16.2 93 117-215 107-203 (328)
165 CHL00195 ycf46 Ycf46; Provisio 97.7 0.0003 6.5E-09 80.8 11.8 175 10-209 228-429 (489)
166 KOG1859 Leucine-rich repeat pr 97.6 1.7E-06 3.7E-11 97.7 -6.6 42 585-627 179-220 (1096)
167 PF00004 AAA: ATPase family as 97.6 0.00043 9.4E-09 65.3 10.4 23 36-58 1-23 (132)
168 TIGR00767 rho transcription te 97.6 0.0001 2.2E-09 80.7 6.6 95 32-129 167-268 (415)
169 TIGR00602 rad24 checkpoint pro 97.6 0.0004 8.6E-09 81.8 11.9 53 6-58 80-135 (637)
170 PLN00020 ribulose bisphosphate 97.6 0.00054 1.2E-08 73.6 11.7 151 31-210 146-333 (413)
171 KOG2982 Uncharacterized conser 97.6 1.1E-05 2.5E-10 82.0 -0.8 185 464-699 69-262 (418)
172 COG1373 Predicted ATPase (AAA+ 97.6 0.00087 1.9E-08 75.7 14.0 148 35-215 39-192 (398)
173 PRK08181 transposase; Validate 97.6 0.00035 7.7E-09 73.8 9.9 35 34-69 107-141 (269)
174 TIGR01243 CDC48 AAA family ATP 97.5 0.00069 1.5E-08 83.5 13.7 173 10-209 453-657 (733)
175 COG3267 ExeA Type II secretory 97.5 0.0027 5.8E-08 64.5 15.1 178 31-218 49-248 (269)
176 smart00382 AAA ATPases associa 97.5 0.00027 5.8E-09 67.5 8.1 35 34-69 3-37 (148)
177 TIGR01243 CDC48 AAA family ATP 97.5 0.00052 1.1E-08 84.5 12.4 174 10-210 178-382 (733)
178 PF12799 LRR_4: Leucine Rich r 97.5 8.6E-05 1.9E-09 54.4 3.2 39 687-726 2-40 (44)
179 COG0593 DnaA ATPase involved i 97.5 0.0013 2.9E-08 72.6 13.9 136 32-188 112-261 (408)
180 PF05621 TniB: Bacterial TniB 97.5 0.0016 3.5E-08 68.6 13.2 202 9-215 33-261 (302)
181 PRK12377 putative replication 97.4 0.00068 1.5E-08 70.8 9.7 36 33-69 101-136 (248)
182 COG5238 RNA1 Ran GTPase-activa 97.4 4.2E-05 9.2E-10 77.0 0.6 143 436-582 85-255 (388)
183 PF12799 LRR_4: Leucine Rich r 97.4 0.00018 3.8E-09 52.7 3.6 40 661-702 1-40 (44)
184 PRK08058 DNA polymerase III su 97.4 0.0042 9.1E-08 68.5 16.2 157 10-182 5-180 (329)
185 PRK09183 transposase/IS protei 97.4 0.00052 1.1E-08 72.7 8.5 36 33-69 102-137 (259)
186 PRK10536 hypothetical protein; 97.4 0.00053 1.1E-08 70.7 7.9 49 10-62 55-105 (262)
187 KOG0730 AAA+-type ATPase [Post 97.4 0.0044 9.5E-08 70.8 15.7 171 11-209 435-637 (693)
188 PRK08769 DNA polymerase III su 97.4 0.016 3.4E-07 63.0 19.6 175 18-216 12-209 (319)
189 PRK07952 DNA replication prote 97.3 0.00055 1.2E-08 71.3 8.0 50 19-69 85-134 (244)
190 COG1223 Predicted ATPase (AAA+ 97.3 0.0042 9E-08 62.6 13.3 170 9-209 120-319 (368)
191 PRK06921 hypothetical protein; 97.3 0.00045 9.7E-09 73.4 7.1 36 33-69 117-153 (266)
192 COG0466 Lon ATP-dependent Lon 97.3 0.0019 4.1E-08 74.5 11.8 159 10-184 323-508 (782)
193 PRK06526 transposase; Provisio 97.3 0.00054 1.2E-08 72.1 7.0 28 33-60 98-125 (254)
194 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0027 5.8E-08 67.7 12.2 36 18-57 10-45 (262)
195 KOG0731 AAA+-type ATPase conta 97.2 0.011 2.3E-07 70.0 17.5 176 7-212 308-521 (774)
196 TIGR00763 lon ATP-dependent pr 97.2 0.0022 4.8E-08 79.2 12.5 52 10-61 320-375 (775)
197 PF01695 IstB_IS21: IstB-like 97.2 0.00047 1E-08 68.5 4.9 36 33-69 47-82 (178)
198 PRK11331 5-methylcytosine-spec 97.2 0.0013 2.8E-08 73.5 8.7 106 9-128 174-284 (459)
199 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0043 9.3E-08 69.9 12.6 153 9-185 189-375 (802)
200 PRK06090 DNA polymerase III su 97.1 0.017 3.6E-07 62.7 17.0 173 18-216 11-202 (319)
201 PRK06835 DNA replication prote 97.1 0.00082 1.8E-08 73.4 6.8 35 34-69 184-218 (329)
202 PRK06871 DNA polymerase III su 97.1 0.023 5E-07 61.8 17.8 174 18-213 10-201 (325)
203 KOG0728 26S proteasome regulat 97.1 0.021 4.6E-07 57.1 15.7 147 11-185 147-332 (404)
204 COG2812 DnaX DNA polymerase II 97.1 0.0071 1.5E-07 69.1 14.0 185 7-209 13-214 (515)
205 KOG3665 ZYG-1-like serine/thre 97.1 0.0002 4.4E-09 85.7 1.7 131 567-718 146-284 (699)
206 TIGR02639 ClpA ATP-dependent C 97.1 0.0052 1.1E-07 75.5 13.9 49 9-57 453-508 (731)
207 COG2607 Predicted ATPase (AAA+ 97.1 0.0055 1.2E-07 61.3 11.1 54 9-62 59-114 (287)
208 PRK06964 DNA polymerase III su 97.1 0.032 6.8E-07 61.3 18.2 92 115-216 131-226 (342)
209 PRK07993 DNA polymerase III su 97.0 0.021 4.6E-07 62.8 16.9 176 17-215 9-204 (334)
210 KOG3665 ZYG-1-like serine/thre 97.0 0.0002 4.3E-09 85.8 1.2 87 519-606 170-263 (699)
211 PRK10733 hflB ATP-dependent me 97.0 0.005 1.1E-07 74.2 13.0 153 10-186 152-337 (644)
212 PRK10865 protein disaggregatio 97.0 0.01 2.2E-07 73.8 16.0 50 10-59 568-624 (857)
213 COG0470 HolB ATPase involved i 97.0 0.0045 9.8E-08 68.7 11.8 142 11-173 2-170 (325)
214 KOG0741 AAA+-type ATPase [Post 97.0 0.0075 1.6E-07 66.8 12.7 126 31-183 536-685 (744)
215 PRK09361 radB DNA repair and r 97.0 0.0019 4.2E-08 67.3 8.1 49 21-70 11-59 (225)
216 COG0542 clpA ATP-binding subun 97.0 0.0036 7.7E-08 74.4 11.0 156 9-184 169-346 (786)
217 PRK04132 replication factor C 97.0 0.015 3.2E-07 70.8 16.4 155 38-214 569-730 (846)
218 PF13177 DNA_pol3_delta2: DNA 97.0 0.0077 1.7E-07 58.9 11.6 144 14-172 1-162 (162)
219 KOG0733 Nuclear AAA ATPase (VC 97.0 0.0092 2E-07 67.4 13.2 128 33-185 545-693 (802)
220 COG5238 RNA1 Ran GTPase-activa 97.0 0.00023 5.1E-09 71.8 0.6 18 486-503 26-43 (388)
221 PF04665 Pox_A32: Poxvirus A32 97.0 0.0035 7.6E-08 64.5 9.1 34 35-69 15-48 (241)
222 PF10443 RNA12: RNA12 protein; 96.9 0.037 8.1E-07 61.1 17.3 195 15-221 1-284 (431)
223 COG0542 clpA ATP-binding subun 96.9 0.0043 9.3E-08 73.7 10.9 118 10-139 491-618 (786)
224 PRK10787 DNA-binding ATP-depen 96.9 0.0037 8.1E-08 76.4 10.8 159 10-184 322-506 (784)
225 PRK12608 transcription termina 96.9 0.0037 8E-08 68.3 9.4 105 21-128 122-232 (380)
226 PF02562 PhoH: PhoH-like prote 96.9 0.0017 3.7E-08 65.3 6.2 124 14-154 4-156 (205)
227 TIGR02902 spore_lonB ATP-depen 96.9 0.0062 1.3E-07 71.6 11.8 47 9-57 64-110 (531)
228 cd01120 RecA-like_NTPases RecA 96.9 0.0028 6E-08 62.3 7.7 34 35-69 1-34 (165)
229 KOG0735 AAA+-type ATPase [Post 96.9 0.017 3.6E-07 66.5 14.5 159 33-215 431-616 (952)
230 KOG2228 Origin recognition com 96.9 0.0052 1.1E-07 64.5 9.5 175 8-184 22-219 (408)
231 PF14532 Sigma54_activ_2: Sigm 96.9 0.001 2.2E-08 63.3 4.2 46 13-58 1-46 (138)
232 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0051 1.1E-07 76.2 11.2 50 10-59 566-622 (852)
233 COG1484 DnaC DNA replication p 96.9 0.0037 8.1E-08 65.9 8.7 37 32-69 104-140 (254)
234 KOG2004 Mitochondrial ATP-depe 96.8 0.0081 1.7E-07 69.1 11.4 158 10-184 411-596 (906)
235 cd01133 F1-ATPase_beta F1 ATP 96.8 0.003 6.6E-08 66.3 7.6 94 32-128 68-175 (274)
236 KOG0744 AAA+-type ATPase [Post 96.8 0.007 1.5E-07 63.1 9.9 80 33-128 177-262 (423)
237 KOG1514 Origin recognition com 96.8 0.036 7.8E-07 64.1 16.4 198 8-216 394-622 (767)
238 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0037 7.9E-08 65.8 8.2 48 21-69 7-60 (235)
239 cd01394 radB RadB. The archaea 96.8 0.0039 8.4E-08 64.7 7.9 49 20-69 6-54 (218)
240 PF00158 Sigma54_activat: Sigm 96.8 0.0071 1.5E-07 59.4 9.2 45 12-56 1-45 (168)
241 PRK11034 clpA ATP-dependent Cl 96.8 0.0098 2.1E-07 72.3 12.3 49 10-58 458-513 (758)
242 KOG1644 U2-associated snRNP A' 96.7 0.0026 5.6E-08 62.0 5.7 40 421-461 43-82 (233)
243 PRK08118 topology modulation p 96.7 0.0011 2.4E-08 65.2 3.4 25 34-58 2-26 (167)
244 KOG1947 Leucine rich repeat pr 96.7 0.00026 5.5E-09 83.5 -1.4 34 442-475 187-223 (482)
245 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0012 2.6E-08 71.7 3.9 49 10-58 51-103 (361)
246 PRK08939 primosomal protein Dn 96.7 0.0056 1.2E-07 66.4 9.1 37 32-69 155-191 (306)
247 COG1618 Predicted nucleotide k 96.7 0.0016 3.4E-08 61.1 4.0 41 34-74 6-47 (179)
248 TIGR02237 recomb_radB DNA repa 96.7 0.0027 5.8E-08 65.4 6.3 44 25-69 4-47 (209)
249 PF07693 KAP_NTPase: KAP famil 96.7 0.043 9.3E-07 60.9 16.4 46 15-60 1-47 (325)
250 PRK04296 thymidine kinase; Pro 96.7 0.003 6.6E-08 63.7 6.3 112 34-155 3-117 (190)
251 PF00448 SRP54: SRP54-type pro 96.7 0.0036 7.8E-08 63.2 6.8 35 34-69 2-36 (196)
252 KOG0734 AAA+-type ATPase conta 96.7 0.013 2.8E-07 65.1 11.2 148 10-185 304-485 (752)
253 COG0464 SpoVK ATPases of the A 96.7 0.01 2.2E-07 69.9 11.5 134 32-189 275-428 (494)
254 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0087 1.9E-07 74.8 11.3 52 9-60 564-622 (852)
255 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.0048 1E-07 59.3 7.0 118 34-154 3-138 (159)
256 PHA00729 NTP-binding motif con 96.6 0.0091 2E-07 60.8 9.3 27 32-58 16-42 (226)
257 PF13207 AAA_17: AAA domain; P 96.6 0.0015 3.3E-08 60.5 3.5 23 35-57 1-23 (121)
258 CHL00095 clpC Clp protease ATP 96.6 0.014 3E-07 72.8 12.4 118 9-138 508-635 (821)
259 PF07728 AAA_5: AAA domain (dy 96.6 0.0024 5.3E-08 60.9 4.6 22 36-57 2-23 (139)
260 PRK11889 flhF flagellar biosyn 96.6 0.023 5E-07 62.3 12.4 37 32-69 240-276 (436)
261 PRK05541 adenylylsulfate kinas 96.6 0.0071 1.5E-07 60.3 8.0 37 32-69 6-42 (176)
262 KOG0652 26S proteasome regulat 96.6 0.057 1.2E-06 54.5 13.8 165 7-199 168-371 (424)
263 KOG1644 U2-associated snRNP A' 96.6 0.0044 9.5E-08 60.4 5.9 106 395-500 39-150 (233)
264 cd01131 PilT Pilus retraction 96.5 0.005 1.1E-07 62.6 6.8 109 34-156 2-111 (198)
265 PRK08699 DNA polymerase III su 96.5 0.058 1.3E-06 59.1 15.4 83 119-211 116-202 (325)
266 KOG1969 DNA replication checkp 96.5 0.0074 1.6E-07 69.6 8.2 76 31-128 324-399 (877)
267 TIGR01817 nifA Nif-specific re 96.5 0.026 5.7E-07 67.0 13.2 51 7-57 193-243 (534)
268 PRK06696 uridine kinase; Valid 96.5 0.0036 7.7E-08 65.1 5.1 47 14-60 2-49 (223)
269 cd01393 recA_like RecA is a b 96.4 0.016 3.4E-07 60.5 10.0 50 20-69 6-60 (226)
270 KOG4579 Leucine-rich repeat (L 96.4 0.00026 5.7E-09 64.1 -3.1 79 399-477 54-134 (177)
271 cd01121 Sms Sms (bacterial rad 96.4 0.016 3.4E-07 64.6 10.0 50 19-69 68-117 (372)
272 PRK06067 flagellar accessory p 96.4 0.012 2.6E-07 61.8 8.6 50 19-69 11-60 (234)
273 PRK07261 topology modulation p 96.3 0.013 2.8E-07 58.0 8.1 23 35-57 2-24 (171)
274 KOG2035 Replication factor C, 96.3 0.012 2.7E-07 60.0 7.8 209 10-236 13-260 (351)
275 PRK07667 uridine kinase; Provi 96.3 0.0078 1.7E-07 60.9 6.7 42 19-60 3-44 (193)
276 PF03215 Rad17: Rad17 cell cyc 96.3 0.018 3.9E-07 66.9 10.2 61 6-69 15-78 (519)
277 TIGR02974 phageshock_pspF psp 96.3 0.03 6.5E-07 61.7 11.6 45 12-56 1-45 (329)
278 cd00983 recA RecA is a bacter 96.3 0.011 2.4E-07 64.0 7.9 50 19-69 40-90 (325)
279 PRK06762 hypothetical protein; 96.3 0.021 4.5E-07 56.3 9.3 24 34-57 3-26 (166)
280 PRK09354 recA recombinase A; P 96.3 0.012 2.6E-07 64.2 8.0 50 19-69 45-95 (349)
281 TIGR02012 tigrfam_recA protein 96.3 0.011 2.3E-07 64.1 7.5 50 19-69 40-90 (321)
282 PF13604 AAA_30: AAA domain; P 96.2 0.019 4.2E-07 58.1 8.9 48 18-69 6-53 (196)
283 KOG0727 26S proteasome regulat 96.2 0.099 2.2E-06 52.6 13.3 147 10-184 155-339 (408)
284 KOG0651 26S proteasome regulat 96.2 0.016 3.4E-07 60.3 7.9 142 10-179 132-311 (388)
285 KOG4579 Leucine-rich repeat (L 96.2 0.0004 8.7E-09 63.0 -3.0 88 443-540 53-141 (177)
286 PRK12723 flagellar biosynthesi 96.2 0.046 1E-06 61.0 12.1 27 32-58 173-199 (388)
287 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.033 7.1E-07 58.5 10.4 50 19-69 7-56 (237)
288 KOG3928 Mitochondrial ribosome 96.1 0.057 1.2E-06 58.6 11.8 53 164-219 404-460 (461)
289 TIGR02858 spore_III_AA stage I 96.1 0.017 3.7E-07 61.2 8.0 117 31-156 109-231 (270)
290 PF01583 APS_kinase: Adenylyls 96.1 0.0092 2E-07 57.1 5.3 35 34-69 3-37 (156)
291 KOG0729 26S proteasome regulat 96.1 0.035 7.6E-07 56.1 9.4 55 10-70 177-242 (435)
292 TIGR03881 KaiC_arch_4 KaiC dom 96.1 0.031 6.7E-07 58.5 9.8 49 20-69 7-55 (229)
293 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.014 3.1E-07 55.9 6.5 101 32-158 25-131 (144)
294 PRK15455 PrkA family serine pr 96.0 0.0066 1.4E-07 69.4 4.8 49 10-58 76-128 (644)
295 cd03228 ABCC_MRP_Like The MRP 96.0 0.024 5.2E-07 56.2 8.4 127 32-168 27-167 (171)
296 TIGR01359 UMP_CMP_kin_fam UMP- 96.0 0.048 1E-06 54.7 10.5 23 35-57 1-23 (183)
297 COG4088 Predicted nucleotide k 96.0 0.036 7.7E-07 54.3 8.7 29 34-62 2-30 (261)
298 PRK11608 pspF phage shock prot 96.0 0.018 3.8E-07 63.5 7.6 48 9-56 5-52 (326)
299 PF08423 Rad51: Rad51; InterP 96.0 0.018 3.9E-07 60.9 7.3 49 21-69 26-79 (256)
300 PF10236 DAP3: Mitochondrial r 95.9 0.26 5.6E-06 53.8 16.5 48 165-212 258-306 (309)
301 KOG0743 AAA+-type ATPase [Post 95.9 0.13 2.7E-06 57.0 13.7 152 34-222 236-417 (457)
302 cd01129 PulE-GspE PulE/GspE Th 95.9 0.028 6.1E-07 59.8 8.7 103 17-136 67-169 (264)
303 PF07726 AAA_3: ATPase family 95.9 0.0057 1.2E-07 55.8 2.9 27 36-62 2-28 (131)
304 KOG0736 Peroxisome assembly fa 95.9 0.15 3.2E-06 59.8 14.6 150 3-176 664-848 (953)
305 PRK00771 signal recognition pa 95.9 0.066 1.4E-06 60.8 12.0 36 32-68 94-129 (437)
306 TIGR03499 FlhF flagellar biosy 95.9 0.033 7.1E-07 60.0 9.1 38 32-69 193-231 (282)
307 CHL00206 ycf2 Ycf2; Provisiona 95.9 0.12 2.6E-06 66.9 14.9 26 32-57 1629-1654(2281)
308 cd02027 APSK Adenosine 5'-phos 95.9 0.043 9.3E-07 52.9 9.0 24 35-58 1-24 (149)
309 PF13671 AAA_33: AAA domain; P 95.8 0.041 8.9E-07 52.6 8.6 23 35-57 1-23 (143)
310 cd03223 ABCD_peroxisomal_ALDP 95.8 0.022 4.8E-07 56.1 6.9 127 32-169 26-161 (166)
311 KOG0739 AAA+-type ATPase [Post 95.8 0.15 3.2E-06 52.9 12.5 172 10-209 133-335 (439)
312 cd03247 ABCC_cytochrome_bd The 95.8 0.044 9.4E-07 54.7 9.0 36 32-69 27-62 (178)
313 COG0396 sufC Cysteine desulfur 95.8 0.019 4.2E-07 57.4 6.1 61 104-166 150-216 (251)
314 PRK11823 DNA repair protein Ra 95.8 0.045 9.8E-07 62.9 10.2 51 18-69 65-115 (446)
315 PF00485 PRK: Phosphoribulokin 95.8 0.0083 1.8E-07 60.9 3.7 26 35-60 1-26 (194)
316 COG0572 Udk Uridine kinase [Nu 95.8 0.019 4E-07 57.8 6.1 30 31-60 6-35 (218)
317 KOG2739 Leucine-rich acidic nu 95.7 0.007 1.5E-07 61.7 3.0 83 657-741 61-154 (260)
318 PRK14722 flhF flagellar biosyn 95.7 0.082 1.8E-06 58.6 11.5 38 32-69 136-174 (374)
319 PF12775 AAA_7: P-loop contain 95.7 0.029 6.2E-07 59.9 7.8 24 34-57 34-57 (272)
320 COG0465 HflB ATP-dependent Zn 95.7 0.071 1.5E-06 62.0 11.3 175 8-211 148-357 (596)
321 PF08433 KTI12: Chromatin asso 95.7 0.035 7.6E-07 58.9 8.3 35 34-69 2-36 (270)
322 KOG1970 Checkpoint RAD17-RFC c 95.7 0.038 8.3E-07 62.0 8.7 44 14-57 86-134 (634)
323 TIGR02238 recomb_DMC1 meiotic 95.7 0.033 7.2E-07 60.6 8.3 51 19-69 82-137 (313)
324 PRK05022 anaerobic nitric oxid 95.7 0.035 7.5E-07 65.4 9.1 50 8-57 185-234 (509)
325 KOG0735 AAA+-type ATPase [Post 95.7 0.12 2.5E-06 59.9 12.5 173 10-210 667-871 (952)
326 KOG1947 Leucine rich repeat pr 95.7 0.0015 3.2E-08 77.1 -2.6 109 660-768 268-389 (482)
327 PF13238 AAA_18: AAA domain; P 95.7 0.0088 1.9E-07 56.0 3.2 22 36-57 1-22 (129)
328 COG5635 Predicted NTPase (NACH 95.7 0.08 1.7E-06 66.1 12.5 212 34-253 223-466 (824)
329 COG4608 AppF ABC-type oligopep 95.6 0.038 8.1E-07 57.3 7.8 125 32-160 38-176 (268)
330 TIGR00708 cobA cob(I)alamin ad 95.6 0.034 7.4E-07 54.2 7.2 116 34-154 6-140 (173)
331 PRK04328 hypothetical protein; 95.6 0.069 1.5E-06 56.4 10.2 48 21-69 11-58 (249)
332 TIGR00416 sms DNA repair prote 95.6 0.053 1.1E-06 62.3 9.9 50 19-69 80-129 (454)
333 PRK05986 cob(I)alamin adenolsy 95.6 0.043 9.3E-07 54.3 7.9 119 33-154 22-158 (191)
334 PLN03187 meiotic recombination 95.6 0.036 7.8E-07 60.8 8.1 49 21-69 114-167 (344)
335 TIGR03574 selen_PSTK L-seryl-t 95.6 0.052 1.1E-06 57.5 9.3 26 35-60 1-26 (249)
336 PRK07132 DNA polymerase III su 95.6 0.85 1.9E-05 49.2 18.5 168 19-215 5-185 (299)
337 KOG2739 Leucine-rich acidic nu 95.6 0.012 2.6E-07 60.0 4.0 37 441-477 63-102 (260)
338 PRK12726 flagellar biosynthesi 95.6 0.1 2.2E-06 57.2 11.3 37 32-69 205-241 (407)
339 PRK14974 cell division protein 95.6 0.14 3E-06 56.1 12.5 29 32-60 139-167 (336)
340 PRK05703 flhF flagellar biosyn 95.5 0.13 2.9E-06 58.5 12.6 36 33-69 221-258 (424)
341 cd03238 ABC_UvrA The excision 95.5 0.034 7.4E-07 55.0 6.9 24 32-55 20-43 (176)
342 PTZ00301 uridine kinase; Provi 95.5 0.013 2.7E-07 59.9 3.8 29 33-61 3-31 (210)
343 PRK08533 flagellar accessory p 95.5 0.036 7.8E-07 57.7 7.3 48 21-69 12-59 (230)
344 cd03115 SRP The signal recogni 95.5 0.087 1.9E-06 52.3 9.8 34 35-69 2-35 (173)
345 COG1066 Sms Predicted ATP-depe 95.5 0.092 2E-06 57.2 10.2 98 18-125 78-177 (456)
346 cd02019 NK Nucleoside/nucleoti 95.5 0.012 2.7E-07 48.1 3.0 23 35-57 1-23 (69)
347 cd00544 CobU Adenosylcobinamid 95.4 0.11 2.5E-06 50.9 10.2 79 36-125 2-82 (169)
348 PRK08233 hypothetical protein; 95.4 0.012 2.6E-07 59.0 3.5 26 33-58 3-28 (182)
349 PRK13531 regulatory ATPase Rav 95.4 0.014 3.1E-07 65.9 4.3 46 9-58 19-64 (498)
350 TIGR00064 ftsY signal recognit 95.4 0.1 2.2E-06 55.7 10.6 38 31-69 70-107 (272)
351 COG1875 NYN ribonuclease and A 95.4 0.081 1.8E-06 56.6 9.5 25 31-55 243-267 (436)
352 PRK04301 radA DNA repair and r 95.4 0.056 1.2E-06 59.5 8.9 50 20-69 89-143 (317)
353 cd01130 VirB11-like_ATPase Typ 95.4 0.013 2.8E-07 58.9 3.6 94 33-135 25-119 (186)
354 TIGR01420 pilT_fam pilus retra 95.4 0.033 7.2E-07 61.9 7.2 106 34-153 123-229 (343)
355 COG0468 RecA RecA/RadA recombi 95.4 0.048 1E-06 57.6 7.8 45 24-69 51-95 (279)
356 PRK15429 formate hydrogenlyase 95.4 0.053 1.1E-06 66.5 9.4 49 9-57 375-423 (686)
357 COG2884 FtsE Predicted ATPase 95.4 0.079 1.7E-06 51.5 8.4 55 105-161 144-204 (223)
358 PRK12724 flagellar biosynthesi 95.4 0.11 2.5E-06 57.9 10.9 25 33-57 223-247 (432)
359 PF07724 AAA_2: AAA domain (Cd 95.4 0.02 4.4E-07 56.4 4.7 36 33-69 3-39 (171)
360 cd01124 KaiC KaiC is a circadi 95.3 0.045 9.8E-07 55.1 7.4 33 36-69 2-34 (187)
361 PRK08356 hypothetical protein; 95.3 0.065 1.4E-06 54.4 8.5 21 34-54 6-26 (195)
362 COG0563 Adk Adenylate kinase a 95.3 0.064 1.4E-06 53.1 8.1 23 35-57 2-24 (178)
363 TIGR00150 HI0065_YjeE ATPase, 95.3 0.022 4.8E-07 53.0 4.4 41 17-57 6-46 (133)
364 cd03222 ABC_RNaseL_inhibitor T 95.3 0.047 1E-06 54.1 7.1 104 33-158 25-136 (177)
365 cd03214 ABC_Iron-Siderophores_ 95.3 0.058 1.2E-06 54.0 7.8 122 32-157 24-161 (180)
366 PF00910 RNA_helicase: RNA hel 95.3 0.011 2.4E-07 53.4 2.3 26 36-61 1-26 (107)
367 PRK05480 uridine/cytidine kina 95.3 0.017 3.7E-07 59.4 4.0 27 31-57 4-30 (209)
368 PRK10867 signal recognition pa 95.3 0.18 3.9E-06 57.2 12.4 29 32-60 99-127 (433)
369 PF06068 TIP49: TIP49 C-termin 95.2 0.039 8.4E-07 59.6 6.6 55 8-62 22-79 (398)
370 PRK03839 putative kinase; Prov 95.2 0.016 3.4E-07 58.1 3.4 24 35-58 2-25 (180)
371 cd03246 ABCC_Protease_Secretio 95.2 0.066 1.4E-06 53.2 7.8 128 32-168 27-168 (173)
372 PRK00889 adenylylsulfate kinas 95.2 0.072 1.6E-06 53.0 8.2 35 33-68 4-38 (175)
373 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.049 1.1E-06 56.3 6.9 52 106-159 147-204 (254)
374 TIGR00235 udk uridine kinase. 95.1 0.019 4.2E-07 58.9 4.0 28 31-58 4-31 (207)
375 PRK09270 nucleoside triphospha 95.1 0.03 6.5E-07 58.5 5.5 32 30-61 30-61 (229)
376 PRK04040 adenylate kinase; Pro 95.1 0.031 6.7E-07 56.1 5.3 29 34-62 3-31 (188)
377 PF00406 ADK: Adenylate kinase 95.1 0.092 2E-06 50.8 8.4 88 38-136 1-94 (151)
378 PF00154 RecA: recA bacterial 95.1 0.083 1.8E-06 57.1 8.7 100 19-128 38-143 (322)
379 PTZ00035 Rad51 protein; Provis 95.1 0.097 2.1E-06 57.7 9.5 51 19-69 104-159 (337)
380 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.016 3.6E-07 59.5 3.2 23 33-55 29-51 (213)
381 PF00437 T2SE: Type II/IV secr 95.1 0.061 1.3E-06 57.8 7.8 125 10-152 104-230 (270)
382 cd01122 GP4d_helicase GP4d_hel 95.1 0.18 3.9E-06 54.2 11.5 38 32-69 29-66 (271)
383 COG1224 TIP49 DNA helicase TIP 95.1 0.053 1.2E-06 57.6 6.8 56 7-62 36-94 (450)
384 KOG2123 Uncharacterized conser 95.1 0.0019 4.1E-08 65.7 -3.6 79 466-556 19-99 (388)
385 PTZ00088 adenylate kinase 1; P 95.0 0.095 2.1E-06 54.3 8.7 23 35-57 8-30 (229)
386 PRK00279 adk adenylate kinase; 95.0 0.13 2.7E-06 53.2 9.7 23 35-57 2-24 (215)
387 PRK00625 shikimate kinase; Pro 95.0 0.02 4.3E-07 56.6 3.3 24 35-58 2-25 (173)
388 TIGR02239 recomb_RAD51 DNA rep 95.0 0.079 1.7E-06 57.9 8.3 51 19-69 82-137 (316)
389 TIGR00959 ffh signal recogniti 94.9 0.26 5.7E-06 55.9 12.6 26 33-58 99-124 (428)
390 cd03216 ABC_Carb_Monos_I This 94.9 0.045 9.7E-07 53.7 5.7 115 32-157 25-145 (163)
391 KOG0730 AAA+-type ATPase [Post 94.9 0.14 3.1E-06 59.0 10.2 172 10-208 184-385 (693)
392 PRK06547 hypothetical protein; 94.9 0.04 8.6E-07 54.4 5.3 27 31-57 13-39 (172)
393 TIGR02236 recomb_radA DNA repa 94.9 0.11 2.4E-06 57.1 9.4 49 21-69 83-136 (310)
394 PF13481 AAA_25: AAA domain; P 94.9 0.021 4.5E-07 57.9 3.5 26 34-59 33-58 (193)
395 PF03308 ArgK: ArgK protein; 94.9 0.055 1.2E-06 55.7 6.3 43 18-60 14-56 (266)
396 COG1120 FepC ABC-type cobalami 94.9 0.053 1.2E-06 56.4 6.3 24 32-55 27-50 (258)
397 TIGR01360 aden_kin_iso1 adenyl 94.9 0.022 4.8E-07 57.4 3.6 26 32-57 2-27 (188)
398 TIGR02788 VirB11 P-type DNA tr 94.9 0.047 1E-06 59.7 6.3 108 33-154 144-253 (308)
399 PRK12727 flagellar biosynthesi 94.9 0.1 2.3E-06 59.7 9.1 29 32-60 349-377 (559)
400 PRK12678 transcription termina 94.9 0.054 1.2E-06 61.9 6.8 96 32-129 415-516 (672)
401 PRK10820 DNA-binding transcrip 94.9 0.097 2.1E-06 61.7 9.3 49 8-56 202-250 (520)
402 cd03230 ABC_DR_subfamily_A Thi 94.9 0.072 1.6E-06 52.9 7.1 118 32-158 25-159 (173)
403 cd01125 repA Hexameric Replica 94.9 0.18 3.9E-06 53.0 10.5 24 35-58 3-26 (239)
404 PRK00131 aroK shikimate kinase 94.8 0.023 5E-07 56.5 3.5 25 33-57 4-28 (175)
405 smart00534 MUTSac ATPase domai 94.8 0.011 2.5E-07 59.3 1.2 21 35-55 1-21 (185)
406 KOG0726 26S proteasome regulat 94.8 0.084 1.8E-06 54.4 7.2 54 8-61 183-247 (440)
407 PRK09302 circadian clock prote 94.8 0.13 2.8E-06 60.8 10.2 56 14-69 12-67 (509)
408 cd03283 ABC_MutS-like MutS-lik 94.8 0.074 1.6E-06 54.0 7.0 24 34-57 26-49 (199)
409 cd00267 ABC_ATPase ABC (ATP-bi 94.8 0.044 9.6E-07 53.4 5.3 123 33-168 25-153 (157)
410 COG1136 SalX ABC-type antimicr 94.8 0.064 1.4E-06 54.6 6.4 64 103-169 147-216 (226)
411 TIGR02782 TrbB_P P-type conjug 94.8 0.14 3.1E-06 55.5 9.5 89 34-135 133-223 (299)
412 COG1428 Deoxynucleoside kinase 94.7 0.026 5.6E-07 56.0 3.2 26 33-58 4-29 (216)
413 TIGR03575 selen_PSTK_euk L-ser 94.7 0.078 1.7E-06 58.0 7.2 23 36-58 2-24 (340)
414 cd02021 GntK Gluconate kinase 94.6 0.16 3.4E-06 49.0 8.7 22 35-56 1-22 (150)
415 TIGR01069 mutS2 MutS2 family p 94.6 0.024 5.2E-07 69.4 3.5 183 33-236 322-522 (771)
416 COG1419 FlhF Flagellar GTP-bin 94.6 0.19 4.1E-06 55.3 9.9 36 33-69 203-240 (407)
417 TIGR01351 adk adenylate kinase 94.6 0.15 3.3E-06 52.4 8.9 22 36-57 2-23 (210)
418 COG1102 Cmk Cytidylate kinase 94.6 0.027 5.9E-07 53.0 3.0 24 35-58 2-25 (179)
419 cd03240 ABC_Rad50 The catalyti 94.5 0.076 1.7E-06 54.2 6.5 21 34-54 23-43 (204)
420 TIGR00390 hslU ATP-dependent p 94.5 0.041 8.9E-07 61.0 4.7 53 9-61 11-75 (441)
421 PRK13947 shikimate kinase; Pro 94.5 0.028 6.1E-07 55.7 3.2 25 35-59 3-27 (171)
422 cd03232 ABC_PDR_domain2 The pl 94.5 0.14 3E-06 51.8 8.4 25 32-56 32-56 (192)
423 PRK14531 adenylate kinase; Pro 94.5 0.14 3.1E-06 51.3 8.4 24 34-57 3-26 (183)
424 COG2842 Uncharacterized ATPase 94.5 0.32 6.9E-06 51.1 10.8 159 6-189 68-228 (297)
425 PLN03186 DNA repair protein RA 94.5 0.1 2.3E-06 57.3 7.8 51 19-69 109-164 (342)
426 KOG1532 GTPase XAB1, interacts 94.5 0.11 2.5E-06 53.0 7.4 31 32-62 18-48 (366)
427 cd03278 ABC_SMC_barmotin Barmo 94.5 0.18 3.9E-06 51.2 9.1 21 35-55 24-44 (197)
428 cd00227 CPT Chloramphenicol (C 94.5 0.032 6.9E-07 55.5 3.5 25 34-58 3-27 (175)
429 PRK10416 signal recognition pa 94.5 0.11 2.4E-06 56.7 7.9 37 32-69 113-149 (318)
430 cd02028 UMPK_like Uridine mono 94.5 0.043 9.3E-07 54.7 4.4 26 35-60 1-26 (179)
431 TIGR01425 SRP54_euk signal rec 94.4 0.28 6.1E-06 55.3 11.1 37 32-69 99-135 (429)
432 PRK14723 flhF flagellar biosyn 94.4 0.38 8.2E-06 58.0 12.7 26 33-58 185-210 (767)
433 KOG0736 Peroxisome assembly fa 94.4 1.2 2.6E-05 52.6 15.9 170 13-209 404-598 (953)
434 COG0488 Uup ATPase components 94.4 0.18 3.9E-06 58.8 9.8 57 108-170 449-511 (530)
435 PRK03846 adenylylsulfate kinas 94.3 0.059 1.3E-06 54.8 5.2 38 31-69 22-59 (198)
436 PRK09280 F0F1 ATP synthase sub 94.3 0.11 2.3E-06 59.0 7.5 93 32-127 143-249 (463)
437 TIGR00455 apsK adenylylsulfate 94.3 0.21 4.6E-06 50.1 9.0 28 32-59 17-44 (184)
438 cd02025 PanK Pantothenate kina 94.3 0.03 6.6E-07 57.8 2.9 25 35-59 1-25 (220)
439 cd03217 ABC_FeS_Assembly ABC-t 94.3 0.076 1.7E-06 54.1 5.8 25 32-56 25-49 (200)
440 PRK09519 recA DNA recombinatio 94.3 0.1 2.3E-06 62.9 7.7 52 17-69 43-95 (790)
441 cd01428 ADK Adenylate kinase ( 94.2 0.28 6E-06 49.7 9.9 22 36-57 2-23 (194)
442 PRK14528 adenylate kinase; Pro 94.2 0.19 4E-06 50.5 8.4 24 34-57 2-25 (186)
443 PRK05439 pantothenate kinase; 94.2 0.064 1.4E-06 57.8 5.3 29 31-59 84-112 (311)
444 PRK11388 DNA-binding transcrip 94.2 0.21 4.6E-06 60.8 10.5 49 9-57 324-372 (638)
445 TIGR01650 PD_CobS cobaltochela 94.2 0.082 1.8E-06 57.1 6.0 52 6-61 41-92 (327)
446 PRK05201 hslU ATP-dependent pr 94.2 0.055 1.2E-06 60.1 4.8 53 9-61 14-78 (443)
447 COG0003 ArsA Predicted ATPase 94.2 0.071 1.5E-06 57.8 5.5 48 33-85 2-49 (322)
448 cd03253 ABCC_ATM1_transporter 94.2 0.23 5E-06 52.1 9.4 25 32-56 26-50 (236)
449 PRK12597 F0F1 ATP synthase sub 94.2 0.12 2.5E-06 58.9 7.4 93 32-127 142-248 (461)
450 TIGR02655 circ_KaiC circadian 94.1 0.12 2.7E-06 60.3 7.9 52 17-69 247-298 (484)
451 cd02024 NRK1 Nicotinamide ribo 94.1 0.035 7.5E-07 55.4 2.8 23 35-57 1-23 (187)
452 cd03213 ABCG_EPDR ABCG transpo 94.1 0.19 4E-06 51.0 8.2 26 32-57 34-59 (194)
453 PF00625 Guanylate_kin: Guanyl 94.1 0.045 9.7E-07 54.9 3.7 35 33-68 2-36 (183)
454 PLN02674 adenylate kinase 94.1 0.32 6.8E-06 50.7 9.9 25 33-57 31-55 (244)
455 cd00071 GMPK Guanosine monopho 94.1 0.034 7.5E-07 52.6 2.6 27 35-61 1-27 (137)
456 COG3854 SpoIIIAA ncharacterize 94.1 0.32 6.9E-06 48.7 9.2 110 34-153 138-252 (308)
457 cd02020 CMPK Cytidine monophos 94.1 0.038 8.3E-07 53.1 3.0 23 35-57 1-23 (147)
458 TIGR03878 thermo_KaiC_2 KaiC d 94.1 0.081 1.7E-06 56.3 5.7 38 31-69 34-71 (259)
459 cd03287 ABC_MSH3_euk MutS3 hom 94.1 0.044 9.5E-07 56.5 3.6 118 32-159 30-159 (222)
460 PRK05800 cobU adenosylcobinami 94.1 0.33 7.3E-06 47.7 9.6 80 35-125 3-85 (170)
461 PRK10751 molybdopterin-guanine 94.0 0.061 1.3E-06 52.7 4.3 28 32-59 5-32 (173)
462 PRK13949 shikimate kinase; Pro 94.0 0.044 9.5E-07 54.1 3.3 24 35-58 3-26 (169)
463 PF03266 NTPase_1: NTPase; In 94.0 0.042 9.1E-07 53.9 3.2 24 36-59 2-25 (168)
464 KOG0742 AAA+-type ATPase [Post 94.0 0.24 5.1E-06 53.6 8.8 127 32-184 383-528 (630)
465 TIGR02322 phosphon_PhnN phosph 94.0 0.043 9.3E-07 54.9 3.3 25 34-58 2-26 (179)
466 PRK14526 adenylate kinase; Pro 94.0 0.23 5.1E-06 50.7 8.7 22 36-57 3-24 (211)
467 PF03969 AFG1_ATPase: AFG1-lik 94.0 0.12 2.5E-06 57.5 6.9 101 32-152 61-166 (362)
468 cd03251 ABCC_MsbA MsbA is an e 94.0 0.23 5.1E-06 52.0 9.1 25 32-56 27-51 (234)
469 COG1703 ArgK Putative periplas 94.0 0.11 2.4E-06 54.3 6.2 44 19-62 37-80 (323)
470 cd02023 UMPK Uridine monophosp 94.0 0.036 7.8E-07 56.4 2.8 23 35-57 1-23 (198)
471 cd03243 ABC_MutS_homologs The 94.0 0.034 7.4E-07 56.8 2.5 22 34-55 30-51 (202)
472 COG2274 SunT ABC-type bacterio 94.0 0.12 2.5E-06 62.6 7.4 24 32-55 498-521 (709)
473 PRK06217 hypothetical protein; 94.0 0.046 1E-06 54.8 3.4 24 35-58 3-26 (183)
474 PF00006 ATP-synt_ab: ATP synt 94.0 0.12 2.6E-06 52.8 6.4 25 34-58 16-40 (215)
475 PRK13657 cyclic beta-1,2-gluca 94.0 0.16 3.5E-06 61.4 8.7 25 32-56 360-384 (588)
476 COG4618 ArpD ABC-type protease 93.9 0.12 2.7E-06 57.7 6.7 23 33-55 362-384 (580)
477 cd03369 ABCC_NFT1 Domain 2 of 93.9 0.3 6.4E-06 50.1 9.3 25 32-56 33-57 (207)
478 cd02029 PRK_like Phosphoribulo 93.9 0.18 4E-06 52.5 7.6 26 35-60 1-26 (277)
479 COG0714 MoxR-like ATPases [Gen 93.9 0.068 1.5E-06 59.2 4.8 49 10-62 24-72 (329)
480 PRK15115 response regulator Gl 93.8 0.46 1E-05 55.2 12.0 48 10-57 134-181 (444)
481 PF03205 MobB: Molybdopterin g 93.8 0.074 1.6E-06 50.5 4.4 28 34-61 1-28 (140)
482 PRK05342 clpX ATP-dependent pr 93.8 0.075 1.6E-06 60.1 5.1 52 10-61 71-136 (412)
483 cd00046 DEXDc DEAD-like helica 93.8 0.18 3.9E-06 47.4 7.2 34 35-69 2-37 (144)
484 cd03233 ABC_PDR_domain1 The pl 93.8 0.19 4.1E-06 51.3 7.6 27 32-58 32-58 (202)
485 PF13086 AAA_11: AAA domain; P 93.8 0.099 2.1E-06 54.6 5.7 37 17-57 5-41 (236)
486 PF02374 ArsA_ATPase: Anion-tr 93.8 0.068 1.5E-06 58.1 4.5 35 34-69 2-36 (305)
487 COG0467 RAD55 RecA-superfamily 93.8 0.11 2.3E-06 55.6 6.0 46 23-69 13-58 (260)
488 COG1936 Predicted nucleotide k 93.8 0.042 9.2E-07 52.6 2.5 20 35-54 2-21 (180)
489 PF13245 AAA_19: Part of AAA d 93.8 0.12 2.7E-06 43.0 5.0 24 34-57 11-35 (76)
490 cd00464 SK Shikimate kinase (S 93.7 0.052 1.1E-06 52.6 3.3 22 36-57 2-23 (154)
491 PRK13975 thymidylate kinase; P 93.7 0.057 1.2E-06 54.8 3.7 26 34-59 3-28 (196)
492 PHA02244 ATPase-like protein 93.7 0.056 1.2E-06 59.0 3.7 47 9-59 95-145 (383)
493 PRK14529 adenylate kinase; Pro 93.7 0.29 6.3E-06 50.3 8.6 90 36-134 3-95 (223)
494 TIGR01039 atpD ATP synthase, F 93.7 0.18 3.9E-06 57.0 7.7 93 32-127 142-248 (461)
495 PRK01184 hypothetical protein; 93.7 0.23 5.1E-06 49.8 8.0 22 34-56 2-23 (184)
496 COG3910 Predicted ATPase [Gene 93.7 0.59 1.3E-05 45.5 9.9 62 106-169 137-202 (233)
497 COG2401 ABC-type ATPase fused 93.7 0.17 3.7E-06 54.9 7.0 62 105-166 514-580 (593)
498 PRK13768 GTPase; Provisional 93.7 0.089 1.9E-06 55.7 5.0 35 34-69 3-37 (253)
499 COG3640 CooC CO dehydrogenase 93.6 0.1 2.2E-06 52.5 5.1 35 35-69 2-36 (255)
500 PRK14738 gmk guanylate kinase; 93.6 0.061 1.3E-06 55.1 3.6 28 29-56 9-36 (206)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.1e-101 Score=971.62 Aligned_cols=858 Identities=32% Similarity=0.508 Sum_probs=705.6
Q ss_pred CCCCCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEeh--Hhh---hhc
Q 001979 3 HTLLSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANV--REV---SQT 77 (987)
Q Consensus 3 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~--~~~---~~~ 77 (987)
.+++...+++|||+.+++++.++|..+.+++++|+||||||+||||||+++|++++.+|+ +.+|+... +.. ...
T Consensus 177 ~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~-g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 177 LTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ-SSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred cccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC-eEEEeeccccccchhhccc
Confidence 345667789999999999999999877788999999999999999999999999999998 88888531 111 100
Q ss_pred ------cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEe
Q 001979 78 ------RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITT 151 (987)
Q Consensus 78 ------~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTt 151 (987)
.....++++++.+++......... ...++++++++|+||||||||+.++|+.+.+...|+++|++|||||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTT 331 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVIT 331 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEe
Confidence 113456777777766554433322 2568889999999999999999999999999888999999999999
Q ss_pred CCcccccccCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhhhcCCCHHHHHHHH
Q 001979 152 RDRHLLVRCDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSFLFARSKAEWKDAL 231 (987)
Q Consensus 152 R~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~~~~~w~~~l 231 (987)
|+++++..++++.+|+|+.|+.+||++||+++||+...+++++.+++++|+++|+|+|||++++|+.|++++..+|+.++
T Consensus 332 rd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l 411 (1153)
T PLN03210 332 KDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDML 411 (1153)
T ss_pred CcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999988888899999999999999999999999887888899999999999999999999999999999999999999
Q ss_pred HhhhcCCCchHHHHHHHhHhCccH-HHHHHHhheeeccCCCCHHHHHHHHHhCCCCccccchhhhcccceEEeCCeEEec
Q 001979 232 DRLKYVPDQKIFEILKISYDGLQE-TEKKIFLDIACFFKGKDKDQVRELLDSCDFYPEIGISVLIDKCIITLSNNILCMH 310 (987)
Q Consensus 232 ~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~Li~~~~~~~~mH 310 (987)
+++++..+.+|..+|++||++|++ .+|.||+++||||.+.+.+.+..+++.+++.++.+++.|++++||+...++++||
T Consensus 412 ~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MH 491 (1153)
T PLN03210 412 PRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMH 491 (1153)
T ss_pred HHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhh
Confidence 999998888999999999999976 5899999999999999999999999999999999999999999999998999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcceeccchhhHHHHhcccccccceeEEEecCCC-CCeeeChhhhcCCCCCcEEEecCc--
Q 001979 311 DLIQDMGREIVRQQSPGNPGQRSRLWLWMDISRVLTKNEVCKAVEGIICLQPS-KGVKLNPESFSRMKNLRLLKIRDV-- 387 (987)
Q Consensus 311 dll~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~i~l~~~~-~~~~~~~~~f~~~~~Lr~L~l~~~-- 387 (987)
|++|+||++++++++ .+|++|+++|.++|+++++..++|++.+++|.++.++ .+..+...+|.+|.+|++|.+..+
T Consensus 492 dLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~ 570 (1153)
T PLN03210 492 SLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKW 570 (1153)
T ss_pred hHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccc
Confidence 999999999999997 7899999999999999999999999999999999887 678899999999999999999654
Q ss_pred --------ccCCCCCcCCcccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCC
Q 001979 388 --------CLRHGIEYLPDELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKT 459 (987)
Q Consensus 388 --------~l~~~~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~ 459 (987)
+++.++..+|.+||.|+|.+|+++.+|..|.+.+|++|+|++|.++.+|.+++.+++|+.|+|++|...+.+
T Consensus 571 ~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i 650 (1153)
T PLN03210 571 DQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEI 650 (1153)
T ss_pred cccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcC
Confidence 356778889999999999999999999999999999999999999999999999999999999999989999
Q ss_pred CCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcC-CcccC
Q 001979 460 PDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTS-IEEIP 538 (987)
Q Consensus 460 ~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~-i~~lp 538 (987)
|+++.+++|+.|+|++|..+..+|.+++.+++|+.|++++|..++.+|..+ ++++|+.|++++|. +..+|
T Consensus 651 p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---------~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 651 PDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---------NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---------CCCCCCEEeCCCCCCccccc
Confidence 999999999999999999999999999999999999999999999999754 68899999999985 44666
Q ss_pred ccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCC------cc-cccccCCCCCcEeeCCCCC-CCCCCc
Q 001979 539 PSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLE------EV-PENLGHIASLENLDLGGTA-IRRPPS 610 (987)
Q Consensus 539 ~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~------~l-p~~l~~l~~L~~L~L~~~~-i~~~p~ 610 (987)
.. ..+|+.|++++|. ...+|..+ .+++|+.|.+.+|.... .+ +......++|+.|++++|. +..+|.
T Consensus 722 ~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~ 796 (1153)
T PLN03210 722 DI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS 796 (1153)
T ss_pred cc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh
Confidence 43 4689999999876 56778765 58889999887754211 11 1122335789999999985 557899
Q ss_pred cccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCE
Q 001979 611 TIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTN 690 (987)
Q Consensus 611 ~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~ 690 (987)
+++++++|+.|++++|..... .+. ..++++|+.|++++|... ..+|.. .++|+.
T Consensus 797 si~~L~~L~~L~Ls~C~~L~~---------------------LP~-~~~L~sL~~L~Ls~c~~L-~~~p~~---~~nL~~ 850 (1153)
T PLN03210 797 SIQNLHKLEHLEIENCINLET---------------------LPT-GINLESLESLDLSGCSRL-RTFPDI---STNISD 850 (1153)
T ss_pred hhhCCCCCCEEECCCCCCcCe---------------------eCC-CCCccccCEEECCCCCcc-cccccc---ccccCE
Confidence 999999999999999875432 111 226789999999999653 234432 468999
Q ss_pred EeCCCCCCcccchhhhccCCCcEEecCCCcccccCCCCc---ccccccccccccccccccCCCcc-----------cCC-
Q 001979 691 LTLSRNNFFSLPASINQLSRLETLNIDYCNRLKALPELP---ASIDGLFAHNCTSLIKLCSPSNI-----------TRL- 755 (987)
Q Consensus 691 L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~sL~~L~~~~C~~L~~l~~~~~l-----------~~~- 755 (987)
|+|++|.++.+|.++..+++|+.|+|++|++++.+|..+ ++|+.+++.+|.+|+.++..... ..+
T Consensus 851 L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p 930 (1153)
T PLN03210 851 LNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLP 930 (1153)
T ss_pred eECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCC
Confidence 999999999999999999999999999999999998754 46777799999999877532110 001
Q ss_pred CCceEEecccccccchhHHHHHHHHHHHHHHHHhhcccCCCCCCeeEEecCCCCCCCCcccccCCeeEE-EeCCCCCC-C
Q 001979 756 TPRMFYLSNCFKLTGNMAIIFFKSLLQSLLKSQLRGLKSAVTSSEFDIVIPGSQVSEWFTYQSIEQSIT-IIPPTYCF-N 833 (987)
Q Consensus 756 ~~~~l~~~~C~~L~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~~i~-~~lp~~~~-~ 833 (987)
....+.|.+|++|+.... ++. + .....+++||.++|+||+||+.|++++ |++|+.|+ .
T Consensus 931 ~~~~l~f~nC~~L~~~a~-------l~~---------~----~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~ 990 (1153)
T PLN03210 931 STVCINFINCFNLDQEAL-------LQQ---------Q----SIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQ 990 (1153)
T ss_pred chhccccccccCCCchhh-------hcc---------c----ccceEEECCCccCchhccCCcccceeeeeccCCcccCC
Confidence 112357899999965421 111 1 112357899999999999999999998 99999999 7
Q ss_pred CcccEEEEEEEeeccCCccccccCCCCCceEEEEEEEECCeeeEEEEeecccCcccCCCeEEEEEeecccc---------
Q 001979 834 SFMGLAFCTAFSIHQHSSFLSHVSAPSNTLYLELVLEINGWHRHSVSISFDVNSLAQFNHLWLCYVSKSYF--------- 904 (987)
Q Consensus 834 ~~~g~~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~--------- 904 (987)
.|.||++|+|+++...... .....+.|.|++.+..+..+.. ...+|+|+.|.+..++
T Consensus 991 ~~~~f~~c~v~~~~~~~~~-----~~~~~~~~~c~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~ 1056 (1153)
T PLN03210 991 PFFRFRACAVVDSESFFII-----SVSFDIQVCCRFIDRLGNHFDS---------PYQPHVFSVTKKGSHLVIFDCCFPL 1056 (1153)
T ss_pred CccceEEEEEEecCccccC-----CCceeEEEEEEEECCCCCcccc---------CCCceeEeeeccccceEEecccccc
Confidence 8999999999987653211 1234567888887765543321 1244555444432211
Q ss_pred -C------CCCCCcceEEEEEEeeccccccceeEEeEEEEEecch
Q 001979 905 -A------APEYPNPIKASVAARDHIYMKLKVKAFGLCFVFDQDV 942 (987)
Q Consensus 905 -~------~~~~~~~~~~~f~~~~~~~~~~~vk~cGv~lv~~~~~ 942 (987)
. +..+. ++++.|...+. ....+||+|||+++|+++.
T Consensus 1057 ~~~~~~~~~~~~~-~~~~~f~~~~~-~~~~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210 1057 NEDNAPLAELNYD-HVDIQFRLTNK-NSQLKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred cccccchhccCCc-eeeEEEEEecC-CCCeEEEeeeEEEeccCCC
Confidence 1 11222 35555543322 2224999999999996653
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-59 Score=563.97 Aligned_cols=305 Identities=30% Similarity=0.393 Sum_probs=270.2
Q ss_pred cccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHH---hhcCCCcceEEEEehHhhhhccCHHHHHHHHHH
Q 001979 13 VGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDN---ISYQFDDGSSFLANVREVSQTRGLVALQEQLVS 89 (987)
Q Consensus 13 vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 89 (987)
||.+..++++...|..++ .++|+|+||||+||||||+.++++ ++.+|+ .++|+. +|+......++++++.
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd-~~iWV~----VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFD-GVIWVV----VSKEFTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCc-eEEEEE----EcccccHHhHHHHHHH
Confidence 999999999999998643 389999999999999999999994 678999 999998 8889999999999999
Q ss_pred HHhcCCCc-ccccchhhHHHHHHHhcCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCcccccc-cCcCceEE
Q 001979 90 EILLDKNV-KIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDRHLLVR-CDVEDTYM 167 (987)
Q Consensus 90 ~l~~~~~~-~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~-~~~~~~~~ 167 (987)
.+...... .....++.+..|.+.|+++|++|||||||+..+|+.+..+++....||+|++|||++.|+.. ++++..++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 86542222 22223677889999999999999999999999999999999888899999999999999998 78889999
Q ss_pred cCCCCHHHHHHHHHHhhccCCCC-CChHHHHHHHHHHHhCCCchhHHHHhhhhcCC-CHHHHHHHHHhhhcC-----C--
Q 001979 168 VEKLNYNEALHLFSWKAFRKGHP-TDGYFELSHSMVNYADGLPLALEILGSFLFAR-SKAEWKDALDRLKYV-----P-- 238 (987)
Q Consensus 168 l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~-~~~~w~~~l~~l~~~-----~-- 238 (987)
++.|+.+|||+||++.||..... .+..+++|++++++|+|+|||+.++|+.|+.+ +..+|+++.+.+.+. +
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 99999999999999999877433 35589999999999999999999999999987 778999999988664 1
Q ss_pred CchHHHHHHHhHhCccHHHHHHHhheeeccCCC--CHHHHHHHHHhCCCCc------------cccchhhhcccceEEeC
Q 001979 239 DQKIFEILKISYDGLQETEKKIFLDIACFFKGK--DKDQVRELLDSCDFYP------------EIGISVLIDKCIITLSN 304 (987)
Q Consensus 239 ~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~~~~~------------~~~~~~L~~~~Li~~~~ 304 (987)
.+.+..++++|||.|+++.|.||+|||.||+++ +++.++..|+++||+. ..+++.|++++|+...+
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 357899999999999988999999999999986 6788999999999763 34589999999999875
Q ss_pred -----CeEEecHHHHHHHHHHHhhc
Q 001979 305 -----NILCMHDLIQDMGREIVRQQ 324 (987)
Q Consensus 305 -----~~~~mHdll~~~~~~i~~~~ 324 (987)
..+.|||++||||.+++.+.
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~ 498 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDF 498 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccc
Confidence 68999999999999999854
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.3e-38 Score=342.66 Aligned_cols=269 Identities=32% Similarity=0.504 Sum_probs=216.6
Q ss_pred cchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHH--hhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHh
Q 001979 15 MDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDN--ISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEIL 92 (987)
Q Consensus 15 r~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 92 (987)
||+++++|.+.|....++.++|+|+||||+||||||++++++ ++.+|+ .++|+. .+.......++.+++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~-~v~wv~----~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFD-GVIWVS----LSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCT-EEEEEE----EES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccc-cccccc----ccccccccccccccccccc
Confidence 789999999999876678999999999999999999999998 889997 999998 5555566888888888865
Q ss_pred cCCC-c-ccccchhhHHHHHHHhcCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCcccccccCc-CceEEcC
Q 001979 93 LDKN-V-KIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDRHLLVRCDV-EDTYMVE 169 (987)
Q Consensus 93 ~~~~-~-~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~~~~-~~~~~l~ 169 (987)
.... . ...+..+....+++.|+++++||||||||+...|+.+...+.....|++||||||++.++...+. ...|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5422 1 34566778899999999999999999999999999888877777789999999999988877654 6799999
Q ss_pred CCCHHHHHHHHHHhhccCC-CCCChHHHHHHHHHHHhCCCchhHHHHhhhhcCC-CHHHHHHHHHhhhcCC------Cch
Q 001979 170 KLNYNEALHLFSWKAFRKG-HPTDGYFELSHSMVNYADGLPLALEILGSFLFAR-SKAEWKDALDRLKYVP------DQK 241 (987)
Q Consensus 170 ~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~-~~~~w~~~l~~l~~~~------~~~ 241 (987)
+|+.+||++||...++... ...+...+.+++|++.|+|+|||++++|++|+.+ +.++|+.+++++.... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999998766 3345556789999999999999999999999654 6788999998766432 467
Q ss_pred HHHHHHHhHhCccHHHHHHHhheeeccCCC--CHHHHHHHHHhCCCCcc
Q 001979 242 IFEILKISYDGLQETEKKIFLDIACFFKGK--DKDQVRELLDSCDFYPE 288 (987)
Q Consensus 242 i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~~~~~~ 288 (987)
+..++.+||+.|+++.|+||+++|+||.+. +.+.++++|.++|++..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999999999999999999999986 58999999999988754
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=5e-30 Score=327.06 Aligned_cols=404 Identities=20% Similarity=0.214 Sum_probs=257.9
Q ss_pred CCCcceeccchhhHHHHhccccc--ccceeEEEecCCCCCeeeChhhhcCCCCCcEEEecCcccCCCCC----cCCcccc
Q 001979 328 NPGQRSRLWLWMDISRVLTKNEV--CKAVEGIICLQPSKGVKLNPESFSRMKNLRLLKIRDVCLRHGIE----YLPDELR 401 (987)
Q Consensus 328 ~~~~~~~l~~~~~~~~~l~~~~~--~~~~~~i~l~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~----~l~~~Lr 401 (987)
+|.++.+.|...+.+........ ...+..+.+.... .....+..|..+++|+.|++++|.+.+.+. ....+|+
T Consensus 43 ~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~-i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~ 121 (968)
T PLN00113 43 DPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKN-ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLR 121 (968)
T ss_pred CCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCC-ccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCC
Confidence 45556666754332222222111 2245555444332 112335678899999999999988764332 2346899
Q ss_pred eEEecCCCCCCCCCCCCCCCceEEEcCCCCcc-ccccccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCC
Q 001979 402 LLKWHGYPLRSLPSNFQPERLFKLNICYSLVE-QLWQGVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNL 479 (987)
Q Consensus 402 ~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l 479 (987)
+|++++|.+....+...+.+|++|++++|.+. .+|..+.++++|++|+|++|.+....|. +.++++|++|+|++|...
T Consensus 122 ~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 201 (968)
T PLN00113 122 YLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201 (968)
T ss_pred EEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc
Confidence 99999988764433345788999999998887 5678888899999999998888777665 888889999999888877
Q ss_pred ccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCc-ccCccccCCCCCCEEeccCCCCC
Q 001979 480 SFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIE-EIPPSIKFLSRLTVLTLRDCKKL 558 (987)
Q Consensus 480 ~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l 558 (987)
..+|..++.+++|++|+|++|.....+|..+ +.+++|++|++++|.+. .+|..++++++|++|++++|...
T Consensus 202 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEI--------GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred CcCChHHcCcCCccEEECcCCccCCcCChhH--------hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 7888888888888999888887777777765 67777777777777765 56777777777777777777776
Q ss_pred cccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCC-CCCccccCCCCCcEEEccCCCCCCCCccc--
Q 001979 559 VSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIR-RPPSTIVLLENLKELSFHGCKGQRKSWSS-- 635 (987)
Q Consensus 559 ~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~~p~~i~~l~~L~~L~L~~~~~~~~~~~~-- 635 (987)
+.+|..+.++++|+.|++++|.....+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|......+..
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 677777777777777777777666667777777777777777777665 34556666777777777666643322211
Q ss_pred -ccccCCCCCCCCCCCccc------------------------cCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCE
Q 001979 636 -LIWLPFYPRANRDSLGFF------------------------IPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTN 690 (987)
Q Consensus 636 -~~~~~~l~~~~~~~~~~~------------------------~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~ 690 (987)
...+..+....+...+.. +..+..+++|+.|++++|++. +.+|..+..+++|+.
T Consensus 354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~ 432 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS-GELPSEFTKLPLVYF 432 (968)
T ss_pred CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee-eECChhHhcCCCCCE
Confidence 112222333333322223 333444555555555555543 234555555555555
Q ss_pred EeCCCCCCc-ccchhhhccCCCcEEecCCCcccccCCCC--ccccccccccccc
Q 001979 691 LTLSRNNFF-SLPASINQLSRLETLNIDYCNRLKALPEL--PASIDGLFAHNCT 741 (987)
Q Consensus 691 L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--p~sL~~L~~~~C~ 741 (987)
|+|++|.++ .+|..+..+++|+.|++++|+....+|.. .++|+.|++.+|.
T Consensus 433 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~ 486 (968)
T PLN00113 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ 486 (968)
T ss_pred EECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCc
Confidence 555555555 33444455555556666555544444432 2345555555543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=4e-29 Score=318.81 Aligned_cols=370 Identities=22% Similarity=0.254 Sum_probs=268.8
Q ss_pred eeChhhhcCCCCCcEEEecCcccCCCCC-cCCcccceEEecCCCCC-CCCCCC-CCCCceEEEcCCCCcc-ccccccCCC
Q 001979 367 KLNPESFSRMKNLRLLKIRDVCLRHGIE-YLPDELRLLKWHGYPLR-SLPSNF-QPERLFKLNICYSLVE-QLWQGVQNM 442 (987)
Q Consensus 367 ~~~~~~f~~~~~Lr~L~l~~~~l~~~~~-~l~~~Lr~L~~~~~~l~-~lp~~~-~~~~L~~L~l~~~~i~-~l~~~~~~l 442 (987)
.++...|..+++||+|++++|.+.+.+. .....|++|++.+|.+. .+|..+ .+.+|++|++++|.+. .+|..+.++
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 187 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhC
Confidence 4666677789999999999888765333 23457889999888876 567666 7888999999888875 567888888
Q ss_pred CCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhc
Q 001979 443 RHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNA 521 (987)
Q Consensus 443 ~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l 521 (987)
++|++|+|++|.+...+|. +.++++|++|+|++|.....+|..++.+++|++|++++|...+.+|..+ +++
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--------~~l 259 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL--------GNL 259 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH--------hCC
Confidence 8999999988888777665 7888888888888888777888888888888888888887666777655 667
Q ss_pred cccceeecCCcCCc-ccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeC
Q 001979 522 KRLLQLHLDQTSIE-EIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDL 600 (987)
Q Consensus 522 ~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L 600 (987)
++|++|++++|.+. .+|.++..+++|++|++++|...+.+|..+.++++|+.|++++|.....+|..+..+++|+.|++
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 77777777777665 56666777777777777777666666666666777777777776666666666666667777777
Q ss_pred CCCCCC-CCCccccCCCCCcEEEccCCCCCCCC------------------------cc---cccccCCCCCCCCCCCcc
Q 001979 601 GGTAIR-RPPSTIVLLENLKELSFHGCKGQRKS------------------------WS---SLIWLPFYPRANRDSLGF 652 (987)
Q Consensus 601 ~~~~i~-~~p~~i~~l~~L~~L~L~~~~~~~~~------------------------~~---~~~~~~~l~~~~~~~~~~ 652 (987)
++|.+. .+|..+..+++|+.|++++|...... +. ....+..+....+...+.
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 666665 34556666666666666665532211 11 111222233444444455
Q ss_pred ccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCc-ccchhhhccCCCcEEecCCCcccccCCCC---
Q 001979 653 FIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFF-SLPASINQLSRLETLNIDYCNRLKALPEL--- 728 (987)
Q Consensus 653 ~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--- 728 (987)
.+..+..+++|+.|++++|.+. +.+|..+..+++|+.|+|++|++. .+|..+ ..++|+.|++++|+....+|..
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~ 497 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQ-GRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS 497 (968)
T ss_pred CChhHhcCCCCCEEECcCCccc-CccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh
Confidence 6677889999999999999986 567777889999999999999987 556544 5689999999998876666642
Q ss_pred cccccccccccccccccc
Q 001979 729 PASIDGLFAHNCTSLIKL 746 (987)
Q Consensus 729 p~sL~~L~~~~C~~L~~l 746 (987)
.++|+.|++.+|.-...+
T Consensus 498 l~~L~~L~Ls~N~l~~~~ 515 (968)
T PLN00113 498 LSELMQLKLSENKLSGEI 515 (968)
T ss_pred hhccCEEECcCCcceeeC
Confidence 357788888777543333
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=2.1e-28 Score=263.58 Aligned_cols=362 Identities=22% Similarity=0.303 Sum_probs=295.3
Q ss_pred CcEEEecCcccCCCCCc----CCcccceEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccccccCCCCCCCEEecCCC
Q 001979 379 LRLLKIRDVCLRHGIEY----LPDELRLLKWHGYPLRSLPSNF-QPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHS 453 (987)
Q Consensus 379 Lr~L~l~~~~l~~~~~~----l~~~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~ 453 (987)
.|-.++++|.++++-.. ....+++|.+....+..+|... .+.+|++|.+.+|++..+-..+..++.|+.+.+.+|
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc
Confidence 44456666666643211 1246788888888888999877 789999999999999999889999999999999998
Q ss_pred CCC--CCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCC
Q 001979 454 VHL--TKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQ 531 (987)
Q Consensus 454 ~~~--~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~ 531 (987)
++. +.++++-.+..|..|||+.| .+.++|..+...+++-+|+|++| .+.++|..+ +.++..|-.|+|+.
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~l-------finLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYN-NIETIPNSL-------FINLTDLLFLDLSN 159 (1255)
T ss_pred ccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccC-ccccCCchH-------HHhhHhHhhhcccc
Confidence 754 44567999999999999995 57889999999999999999997 789999876 57899999999999
Q ss_pred cCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCC-CCcccccccCCCCCcEeeCCCCCCCCCCc
Q 001979 532 TSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSK-LEEVPENLGHIASLENLDLGGTAIRRPPS 610 (987)
Q Consensus 532 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~-l~~lp~~l~~l~~L~~L~L~~~~i~~~p~ 610 (987)
|+++.+|+.+..+.+|+.|.|++|+...---..+..+++|++|.+++.+. +..+|..+..+.+|..++++.|++..+|+
T Consensus 160 NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe 239 (1255)
T KOG0444|consen 160 NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPE 239 (1255)
T ss_pred chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchH
Confidence 99999999999999999999999986432222233588999999988654 46699999999999999999999999999
Q ss_pred cccCCCCCcEEEccCCCCCCCCcccccc--cCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCC
Q 001979 611 TIVLLENLKELSFHGCKGQRKSWSSLIW--LPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSAL 688 (987)
Q Consensus 611 ~i~~l~~L~~L~L~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L 688 (987)
.+..+.+|+.|+|++|.........-.| +..+.++.+. ....+..+..++.|+.|.+.+|.+.-+++|+.++.+..|
T Consensus 240 cly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred HHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 9999999999999999865442221111 1223333332 334567788899999999999999888999999999999
Q ss_pred CEEeCCCCCCcccchhhhccCCCcEEecCCCcccccCCC---CcccccccccccccccccccCCCc
Q 001979 689 TNLTLSRNNFFSLPASINQLSRLETLNIDYCNRLKALPE---LPASIDGLFAHNCTSLIKLCSPSN 751 (987)
Q Consensus 689 ~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~---lp~sL~~L~~~~C~~L~~l~~~~~ 751 (987)
+.+..++|.+.-+|++++.|..|+.|.|++ +.|-.+|+ +.+-|+.|++.+-++|.--+.++.
T Consensus 319 evf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 319 EVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred HHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCCcch
Confidence 999999999999999999999999999987 55666886 567889999999988876665443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=2.2e-27 Score=255.75 Aligned_cols=329 Identities=23% Similarity=0.324 Sum_probs=280.0
Q ss_pred CeeeChhhhcCCCCCcEEEecCcccCC---CCCcCCcccceEEecCCCCC--CCCCC-CCCCCceEEEcCCCCccccccc
Q 001979 365 GVKLNPESFSRMKNLRLLKIRDVCLRH---GIEYLPDELRLLKWHGYPLR--SLPSN-FQPERLFKLNICYSLVEQLWQG 438 (987)
Q Consensus 365 ~~~~~~~~f~~~~~Lr~L~l~~~~l~~---~~~~l~~~Lr~L~~~~~~l~--~lp~~-~~~~~L~~L~l~~~~i~~l~~~ 438 (987)
.+.-.|+.++.+.+|..|.+++|++.. .+..+| .||.+....|.++ .+|.+ |.++.|..|+|++|.+.+.|.+
T Consensus 43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp-~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~ 121 (1255)
T KOG0444|consen 43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLP-RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN 121 (1255)
T ss_pred hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccch-hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh
Confidence 445557778888889988888887654 333443 6888888888876 46755 5999999999999999999999
Q ss_pred cCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHH
Q 001979 439 VQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEI 517 (987)
Q Consensus 439 ~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~ 517 (987)
+...+++-+|+||+|++.+.+.. |.+++.|-.|||++| .+..+|+.+..+.+|++|.|++|.. ....|.-
T Consensus 122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL--------~hfQLrQ 192 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPL--------NHFQLRQ 192 (1255)
T ss_pred hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChh--------hHHHHhc
Confidence 99999999999999998876655 889999999999984 6788999999999999999999842 1122233
Q ss_pred hhhccccceeecCCcCCc--ccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCC
Q 001979 518 VQNAKRLLQLHLDQTSIE--EIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASL 595 (987)
Q Consensus 518 ~~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L 595 (987)
+..|++|+.|.++++.-+ .+|.++..+.+|..+|+|.| .+..+|..+.++++|+.|+|++|. ++++.-..+...+|
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~l 270 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENL 270 (1255)
T ss_pred CccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhh
Confidence 356889999999999755 89999999999999999964 678899999999999999999975 56666677788999
Q ss_pred cEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCC
Q 001979 596 ENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQE 675 (987)
Q Consensus 596 ~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~ 675 (987)
+.|+++.|+++.+|+.+.++++|+.|.+.+|+..- ..+++.++.+..|+.+..++|.+.
T Consensus 271 EtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F--------------------eGiPSGIGKL~~Levf~aanN~LE- 329 (1255)
T KOG0444|consen 271 ETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF--------------------EGIPSGIGKLIQLEVFHAANNKLE- 329 (1255)
T ss_pred hhhccccchhccchHHHhhhHHHHHHHhccCcccc--------------------cCCccchhhhhhhHHHHhhccccc-
Confidence 99999999999999999999999999998877432 245677889999999999999984
Q ss_pred CCCccccCCCCCCCEEeCCCCCCcccchhhhccCCCcEEecCCCcccccCCC
Q 001979 676 GAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCNRLKALPE 727 (987)
Q Consensus 676 ~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 727 (987)
.+|..++.+..|+.|.|+.|++..+|+.|.-|+.|+.|++..|++|.--|.
T Consensus 330 -lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 330 -LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred -cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 589999999999999999999999999999999999999999999875443
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.4e-26 Score=248.59 Aligned_cols=338 Identities=22% Similarity=0.248 Sum_probs=185.6
Q ss_pred cEEEecCcccCCC-----CCcCCcccceEEecCCCCCCCCCCC--CCCCceEEEcCCCCccccccccCCCCCCCEEecCC
Q 001979 380 RLLKIRDVCLRHG-----IEYLPDELRLLKWHGYPLRSLPSNF--QPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSH 452 (987)
Q Consensus 380 r~L~l~~~~l~~~-----~~~l~~~Lr~L~~~~~~l~~lp~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~ 452 (987)
+.|+.++..+... ...+|...+.|++++|.+..+...+ ++++|++++|.+|.++.+|.......+|+.|+|.+
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec
Confidence 4555555554432 3445667777777777777775442 77777777777777777777777777777777777
Q ss_pred CCCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCC
Q 001979 453 SVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQ 531 (987)
Q Consensus 453 ~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~ 531 (987)
|.+...... +.-++.|+.|||+.|.....--+++..-.++++|+|++|. ++.+-. ..+..+.+|..|.|+.
T Consensus 135 N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~-------~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLET-------GHFDSLNSLLTLKLSR 206 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-cccccc-------ccccccchheeeeccc
Confidence 766555443 6667777777777754333222345555667777777763 332222 1235566777777777
Q ss_pred cCCcccCcc-ccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCC-C
Q 001979 532 TSIEEIPPS-IKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRP-P 609 (987)
Q Consensus 532 ~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~-p 609 (987)
|+|+.+|.. |.++++|+.|+|..|..-..--..|..|++|+.|.+..|....--...|..|.++++|+|..|++..+ .
T Consensus 207 NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 207 NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence 777777654 44477777777766543322223355566666666655543322223344555555555555555544 2
Q ss_pred ccccCCCCCcEEEccCCCCCC---CCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCC
Q 001979 610 STIVLLENLKELSFHGCKGQR---KSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLS 686 (987)
Q Consensus 610 ~~i~~l~~L~~L~L~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~ 686 (987)
.++.+++.|+.|++++|.+.. +.|.....+..+.+..|........+|..+..|++|+|+.|.+.. .-...+.+++
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~ls 365 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLS 365 (873)
T ss_pred ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhh
Confidence 344555555555555554321 222222333334444444444444445555555555555555431 1112344555
Q ss_pred CCCEEeCCCCCCcc----cchhhhccCCCcEEecCCCcccccCCC
Q 001979 687 ALTNLTLSRNNFFS----LPASINQLSRLETLNIDYCNRLKALPE 727 (987)
Q Consensus 687 ~L~~L~L~~n~l~~----lp~~i~~l~~L~~L~L~~c~~L~~lp~ 727 (987)
+|++|+|++|.++- -...+..+++|+.|.+.+ ++++++|.
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k 409 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK 409 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecch
Confidence 55555555555441 122334455555555555 34555543
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=5.6e-23 Score=262.04 Aligned_cols=315 Identities=29% Similarity=0.423 Sum_probs=261.6
Q ss_pred hhhcCC-CCCcEEEecCcccCCCCC-cCCcccceEEecCCCCCCCCCCC-CCCCceEEEcCCCC-ccccccccCCCCCCC
Q 001979 371 ESFSRM-KNLRLLKIRDVCLRHGIE-YLPDELRLLKWHGYPLRSLPSNF-QPERLFKLNICYSL-VEQLWQGVQNMRHLK 446 (987)
Q Consensus 371 ~~f~~~-~~Lr~L~l~~~~l~~~~~-~l~~~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~l~~~~-i~~l~~~~~~l~~L~ 446 (987)
+.|..+ .+||.|.+.++.+..-+. ..+.+|+.|++.++.+..+|..+ .+.+|++|+++++. +..+|. +..+++|+
T Consensus 582 ~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le 660 (1153)
T PLN03210 582 EGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLE 660 (1153)
T ss_pred cchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCccc
Confidence 345555 569999998876543222 23679999999999999998877 78999999999764 667764 78899999
Q ss_pred EEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccc
Q 001979 447 FIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLL 525 (987)
Q Consensus 447 ~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~ 525 (987)
.|+|++|..+..+|. +..+++|+.|++++|..+..+|..+ .+++|++|++++|..++.+|. ...+|+
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~-----------~~~nL~ 728 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD-----------ISTNIS 728 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc-----------ccCCcC
Confidence 999999998888876 8999999999999999999999876 799999999999998888874 346899
Q ss_pred eeecCCcCCcccCccccCCCCCCEEeccCCCCCc------cc-CccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEe
Q 001979 526 QLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLV------SL-PSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENL 598 (987)
Q Consensus 526 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~------~l-p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 598 (987)
.|++++|.++.+|..+ .+++|+.|.+.+|.... .+ |......++|+.|++++|..+..+|..++++++|+.|
T Consensus 729 ~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L 807 (1153)
T PLN03210 729 WLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHL 807 (1153)
T ss_pred eeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEE
Confidence 9999999999999876 68999999998765321 11 1112345789999999999999999999999999999
Q ss_pred eCCCC-CCCCCCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCC
Q 001979 599 DLGGT-AIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGA 677 (987)
Q Consensus 599 ~L~~~-~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ 677 (987)
++++| .+..+|..+ .+++|+.|++++|...... + ...++|+.|+|++|.+.+
T Consensus 808 ~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~----------------------p--~~~~nL~~L~Ls~n~i~~-- 860 (1153)
T PLN03210 808 EIENCINLETLPTGI-NLESLESLDLSGCSRLRTF----------------------P--DISTNISDLNLSRTGIEE-- 860 (1153)
T ss_pred ECCCCCCcCeeCCCC-CccccCEEECCCCCccccc----------------------c--ccccccCEeECCCCCCcc--
Confidence 99987 466778766 7899999999999754321 1 113589999999999965
Q ss_pred CccccCCCCCCCEEeCCCC-CCcccchhhhccCCCcEEecCCCcccccCC
Q 001979 678 IPNDLGSLSALTNLTLSRN-NFFSLPASINQLSRLETLNIDYCNRLKALP 726 (987)
Q Consensus 678 lp~~l~~l~~L~~L~L~~n-~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 726 (987)
+|..+..+++|+.|+|++| ++..+|..+..+++|+.|++++|..|+.++
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 8999999999999999997 788999999999999999999999998654
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=3.6e-25 Score=237.94 Aligned_cols=332 Identities=20% Similarity=0.213 Sum_probs=248.0
Q ss_pred ecCCC-CCeeeChhhhcCCCCCcEEEecCcccCCCCC--cCCcccceEEecCCCCCCCCCCC--CCCCceEEEcCCCCcc
Q 001979 359 CLQPS-KGVKLNPESFSRMKNLRLLKIRDVCLRHGIE--YLPDELRLLKWHGYPLRSLPSNF--QPERLFKLNICYSLVE 433 (987)
Q Consensus 359 l~~~~-~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~--~l~~~Lr~L~~~~~~l~~lp~~~--~~~~L~~L~l~~~~i~ 433 (987)
++.++ .--+++...|.++++|+.+++..|.+...+. ....++..|++.+|.+.++.+.- .++.|+.|||+.|.|.
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is 162 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS 162 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh
Confidence 44444 3345777888888888888888887665332 23456888888888888876433 5677888888888888
Q ss_pred cccc-ccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhh
Q 001979 434 QLWQ-GVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIE 511 (987)
Q Consensus 434 ~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~ 511 (987)
+++. .+..-.++++|+|++|.+.+.-.. |.++.+|..|.|+.|....--+.+|..+++|+.|+|..|. ++..-.
T Consensus 163 ~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~--- 238 (873)
T KOG4194|consen 163 EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEG--- 238 (873)
T ss_pred cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehh---
Confidence 8865 455557888888888887766544 8888888888888866554444567778888888888763 322211
Q ss_pred hhhHHHhhhccccceeecCCcCCcccCcc-ccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCccccccc
Q 001979 512 WASLEIVQNAKRLLQLHLDQTSIEEIPPS-IKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLG 590 (987)
Q Consensus 512 ~~~l~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~ 590 (987)
-.+..+++|+.|.|..|.|..+.+. |..|.++++|+|+.|.....-..++.+|++|+.|+++.|..-..-++...
T Consensus 239 ----ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 239 ----LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred ----hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 1246788888888888888888765 67788888888888877666666778888888888888877666677777
Q ss_pred CCCCCcEeeCCCCCCCCCC-ccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecC
Q 001979 591 HIASLENLDLGGTAIRRPP-STIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLG 669 (987)
Q Consensus 591 ~l~~L~~L~L~~~~i~~~p-~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls 669 (987)
..++|++|+|+.|+|++++ .++..+..|+.|.|++|..... .-..|.++++|+.|||+
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l---------------------~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL---------------------AEGAFVGLSSLHKLDLR 373 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH---------------------HhhHHHHhhhhhhhcCc
Confidence 7888888888888888874 4677788888888888763211 11346788899999999
Q ss_pred CCCCCCCCC---ccccCCCCCCCEEeCCCCCCcccch-hhhccCCCcEEecCCCc
Q 001979 670 DCNLQEGAI---PNDLGSLSALTNLTLSRNNFFSLPA-SINQLSRLETLNIDYCN 720 (987)
Q Consensus 670 ~~~l~~~~l---p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 720 (987)
.|.+. ..+ ...+.++++|+.|.|.||++.++|. .+.++.+|++|+|.+|.
T Consensus 374 ~N~ls-~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 374 SNELS-WCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred CCeEE-EEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 99774 222 2346779999999999999999884 67889999999999865
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1.5e-25 Score=231.06 Aligned_cols=248 Identities=25% Similarity=0.324 Sum_probs=185.0
Q ss_pred eeeChhhhcCCCCCcEEEecCcccCCCCCcCC--cccceEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccccccCCC
Q 001979 366 VKLNPESFSRMKNLRLLKIRDVCLRHGIEYLP--DELRLLKWHGYPLRSLPSNF-QPERLFKLNICYSLVEQLWQGVQNM 442 (987)
Q Consensus 366 ~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~~l~--~~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l 442 (987)
.....+...++..|.+|.++++.+..-+..+- .++..|+.+.+.+..+|... ....|+.|+.++|...++++++..+
T Consensus 57 l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~ 136 (565)
T KOG0472|consen 57 LEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRL 136 (565)
T ss_pred hhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHH
Confidence 33334455666677777777766544322221 24556667777777777655 6677777777777777777777777
Q ss_pred CCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhcc
Q 001979 443 RHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAK 522 (987)
Q Consensus 443 ~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~ 522 (987)
..|..++..+|++...++++..+.+|..|++.+|.. ..+|+..-.++.|++||...| .++.+|..+ +.+.
T Consensus 137 ~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~l--------g~l~ 206 (565)
T KOG0472|consen 137 LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNSN-LLETLPPEL--------GGLE 206 (565)
T ss_pred hhhhhhhccccccccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccchh-hhhcCChhh--------cchh
Confidence 777777777777777777777777777777777543 344444334777777777765 677777766 7888
Q ss_pred ccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCC-CCCCCCEEEecCCCCCCcccccccCCCCCcEeeCC
Q 001979 523 RLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSIS-DLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLG 601 (987)
Q Consensus 523 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~ 601 (987)
+|..|++..|+|..+| .|..+..|+.|.++.| ..+.+|...+ ++++|.+|++..| +++++|+.+..+.+|+.||++
T Consensus 207 ~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 207 SLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLS 283 (565)
T ss_pred hhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhccc
Confidence 8888888888888888 6888888888888765 4566776655 8999999999986 678999999999999999999
Q ss_pred CCCCCCCCccccCCCCCcEEEccCCC
Q 001979 602 GTAIRRPPSTIVLLENLKELSFHGCK 627 (987)
Q Consensus 602 ~~~i~~~p~~i~~l~~L~~L~L~~~~ 627 (987)
+|.|+.+|.+++++ .|+.|.+.||+
T Consensus 284 NN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 284 NNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred CCccccCCcccccc-eeeehhhcCCc
Confidence 99999999999999 99999998875
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=1.3e-24 Score=224.25 Aligned_cols=341 Identities=23% Similarity=0.313 Sum_probs=208.6
Q ss_pred hhhhcCCCCCcEEEecCcccCCCCCcCC--cccceEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccccccCCCCCCC
Q 001979 370 PESFSRMKNLRLLKIRDVCLRHGIEYLP--DELRLLKWHGYPLRSLPSNF-QPERLFKLNICYSLVEQLWQGVQNMRHLK 446 (987)
Q Consensus 370 ~~~f~~~~~Lr~L~l~~~~l~~~~~~l~--~~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 446 (987)
+.+++++..++.|+.+.+.+..-++..- .+++.|+++.+.+..+|.++ .+..|..|+..+|++..+|.++.++.+|.
T Consensus 84 p~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~ 163 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLS 163 (565)
T ss_pred CHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHH
Confidence 3455555556666666554433222211 24555666666666666555 55666666666666666666666666666
Q ss_pred EEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhh------------
Q 001979 447 FIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWAS------------ 514 (987)
Q Consensus 447 ~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~------------ 514 (987)
.+++.+|.....+|+.-.++.|++||... +.++.+|+.++.+.+|..|+|..| .+..+|+.-..+.
T Consensus 164 ~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 164 KLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQIE 241 (565)
T ss_pred HhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccHHH
Confidence 66666666655555544566666666654 345556666666666666666664 4444442111111
Q ss_pred ---HHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCC----------
Q 001979 515 ---LEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSK---------- 581 (987)
Q Consensus 515 ---l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~---------- 581 (987)
-+....+.+|..||+++|+++++|+.+.-+.+|.+||+++|. ...+|.+++++ .|+.|.+.||+.
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~ 319 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISK 319 (565)
T ss_pred hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHHHcc
Confidence 144567888888899999999999888888889999988754 56678888888 888888877664
Q ss_pred ------------------------------------------------------CCcccccccCC---CCCcEeeCCCCC
Q 001979 582 ------------------------------------------------------LEEVPENLGHI---ASLENLDLGGTA 604 (987)
Q Consensus 582 ------------------------------------------------------l~~lp~~l~~l---~~L~~L~L~~~~ 604 (987)
++.+|+..... .-.+..++++|+
T Consensus 320 gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 320 GTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ 399 (565)
T ss_pred cHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch
Confidence 01111110000 012233444444
Q ss_pred CCC------------------------CCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCC
Q 001979 605 IRR------------------------PPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGL 660 (987)
Q Consensus 605 i~~------------------------~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l 660 (987)
+.+ +|..+..+++|..|++++|... ..|..++.+
T Consensus 400 L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln----------------------~LP~e~~~l 457 (565)
T KOG0472|consen 400 LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN----------------------DLPEEMGSL 457 (565)
T ss_pred HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh----------------------hcchhhhhh
Confidence 433 3445567788889999886522 234446667
Q ss_pred CcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccchh-hhccCCCcEEecCCCcccccCCCCccccccccccc
Q 001979 661 HCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPAS-INQLSRLETLNIDYCNRLKALPELPASIDGLFAHN 739 (987)
Q Consensus 661 ~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~ 739 (987)
..|+.|+++.|.+.. +|..+..+..|+.+-.++|++.+++.+ +.++.+|..||+.+ +.++.+|.. +.+
T Consensus 458 v~Lq~LnlS~NrFr~--lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~--------Lgn 526 (565)
T KOG0472|consen 458 VRLQTLNLSFNRFRM--LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPI--------LGN 526 (565)
T ss_pred hhhheeccccccccc--chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChh--------hcc
Confidence 778888888887754 777666666666666666777776654 77777777777776 445555542 346
Q ss_pred cccccccc
Q 001979 740 CTSLIKLC 747 (987)
Q Consensus 740 C~~L~~l~ 747 (987)
|++|+++.
T Consensus 527 mtnL~hLe 534 (565)
T KOG0472|consen 527 MTNLRHLE 534 (565)
T ss_pred ccceeEEE
Confidence 66666665
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=5.9e-24 Score=241.06 Aligned_cols=390 Identities=22% Similarity=0.239 Sum_probs=255.2
Q ss_pred hhhhcCCCCCcEEEecCcccCCCCCcCC--cccceEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccccccCCCCCCC
Q 001979 370 PESFSRMKNLRLLKIRDVCLRHGIEYLP--DELRLLKWHGYPLRSLPSNF-QPERLFKLNICYSLVEQLWQGVQNMRHLK 446 (987)
Q Consensus 370 ~~~f~~~~~Lr~L~l~~~~l~~~~~~l~--~~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~ 446 (987)
-++..+.-+|+.|++++|+...-+..+. .+|+.|.++.+.++++|... ++.+|++|+|.+|.+..+|.++..+++|+
T Consensus 38 l~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQ 117 (1081)
T ss_pred hHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccc
Confidence 3444445559999999998765443332 48999999999999999776 89999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCcccEEeccCC-------------------cCCccccCccccCCCCcEEeCcCCCCCccCC
Q 001979 447 FIKLSHSVHLTKTPDFTGVPKLERLVLDGC-------------------TNLSFVHPSIGLLKRLKVLNMKECIRIKSFP 507 (987)
Q Consensus 447 ~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~-------------------~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp 507 (987)
+|++++|.+...++.+..+..++.+..++| .....++..+..+++ .|+|+.|......-
T Consensus 118 ~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 118 YLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDL 195 (1081)
T ss_pred ccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhh
Confidence 999999998877766666666666666665 222333333444444 46666654331000
Q ss_pred chh-hhhhH------------------------------HHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCC
Q 001979 508 AEI-EWASL------------------------------EIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCK 556 (987)
Q Consensus 508 ~~i-~~~~l------------------------------~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~ 556 (987)
... ....+ .......+|++++++.+.+..+|+|++.+.+|+.|++.+|.
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchh
Confidence 000 00000 11122345666666666666666666666666666666654
Q ss_pred CCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCC--CCCcEEEccCCCCCCCC--
Q 001979 557 KLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLL--ENLKELSFHGCKGQRKS-- 632 (987)
Q Consensus 557 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l--~~L~~L~L~~~~~~~~~-- 632 (987)
. ..+|..+....+|+.|.+..| .++.+|+....+++|+.|+|..|.+..+|+.+..- ..|..|..+.++.....
T Consensus 276 l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 276 L-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred H-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 4 555555666666666666554 34556666666666666666666666665532211 11333333333321111
Q ss_pred -cccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccc-cCCCCCCCEEeCCCCCCcccchhhhccCC
Q 001979 633 -WSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPND-LGSLSALTNLTLSRNNFFSLPASINQLSR 710 (987)
Q Consensus 633 -~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~i~~l~~ 710 (987)
......+..+...+|...+...+.+.++.+|+.|+|++|.+.+ +|.. +.+++.|++|+||||.++.+|..+..++.
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSGNKLTTLPDTVANLGR 431 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc--CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhh
Confidence 0111122335556777777778889999999999999999964 7765 78899999999999999999999888888
Q ss_pred CcEEecCCCcccccCCCC--cccccccccccccccccccCCCcccCCCCceEEeccccc
Q 001979 711 LETLNIDYCNRLKALPEL--PASIDGLFAHNCTSLIKLCSPSNITRLTPRMFYLSNCFK 767 (987)
Q Consensus 711 L~~L~L~~c~~L~~lp~l--p~sL~~L~~~~C~~L~~l~~~~~l~~~~~~~l~~~~C~~ 767 (987)
|+.|...+ +.+.++|++ .+.|+.+++ +|..|..+..+........+.+++++-..
T Consensus 432 L~tL~ahs-N~l~~fPe~~~l~qL~~lDl-S~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 432 LHTLRAHS-NQLLSFPELAQLPQLKVLDL-SCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hHHHhhcC-CceeechhhhhcCcceEEec-ccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 88888777 557777764 367777777 67777776655444434445565555443
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=4.3e-17 Score=192.73 Aligned_cols=254 Identities=22% Similarity=0.191 Sum_probs=120.8
Q ss_pred CcEEEecCcccCCCCCcCCcccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCC
Q 001979 379 LRLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTK 458 (987)
Q Consensus 379 Lr~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~ 458 (987)
-..|+++++.+..-+..++..++.|.+.+|.+..+|.. +++|++|++++|.++.+|.. .++|+.|+|++|.+.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~-- 275 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT-- 275 (788)
T ss_pred CcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCchh--
Confidence 44555555555433333444555555555555555542 34555555555555555432 234455555554432
Q ss_pred CCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccC
Q 001979 459 TPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIP 538 (987)
Q Consensus 459 ~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp 538 (987)
.+|.. .++|+.|++++| .++.+|. .+++|+.|++++|.++.+|
T Consensus 276 ----------------------~Lp~l---p~~L~~L~Ls~N-~Lt~LP~-----------~p~~L~~LdLS~N~L~~Lp 318 (788)
T PRK15387 276 ----------------------HLPAL---PSGLCKLWIFGN-QLTSLPV-----------LPPGLQELSVSDNQLASLP 318 (788)
T ss_pred ----------------------hhhhc---hhhcCEEECcCC-ccccccc-----------cccccceeECCCCccccCC
Confidence 22221 123444444444 2333332 1234444555555444444
Q ss_pred ccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCC
Q 001979 539 PSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENL 618 (987)
Q Consensus 539 ~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L 618 (987)
... .+|+.|++++|.. ..+|.. ..+|+.|++++|. +..+|.. ..+|+.|++++|.+..+|.. ..+|
T Consensus 319 ~lp---~~L~~L~Ls~N~L-~~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L 384 (788)
T PRK15387 319 ALP---SELCKLWAYNNQL-TSLPTL---PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTSLPAL---PSGL 384 (788)
T ss_pred CCc---ccccccccccCcc-cccccc---ccccceEecCCCc-cCCCCCC---CcccceehhhccccccCccc---cccc
Confidence 321 2344444444432 223321 1245555555543 2334432 23455555555555555532 2345
Q ss_pred cEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCC
Q 001979 619 KELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNF 698 (987)
Q Consensus 619 ~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l 698 (987)
+.|++++|..... +. ..++|+.|++++|.+.. +|.. +.+|+.|++++|++
T Consensus 385 ~~LdLs~N~Lt~L----------------------P~---l~s~L~~LdLS~N~Lss--IP~l---~~~L~~L~Ls~NqL 434 (788)
T PRK15387 385 KELIVSGNRLTSL----------------------PV---LPSELKELMVSGNRLTS--LPML---PSGLLSLSVYRNQL 434 (788)
T ss_pred ceEEecCCcccCC----------------------CC---cccCCCEEEccCCcCCC--CCcc---hhhhhhhhhccCcc
Confidence 5566655542210 00 01356666666666643 5532 23556666666666
Q ss_pred cccchhhhccCCCcEEecCCCc
Q 001979 699 FSLPASINQLSRLETLNIDYCN 720 (987)
Q Consensus 699 ~~lp~~i~~l~~L~~L~L~~c~ 720 (987)
+.+|..+.++++|+.|+|++|+
T Consensus 435 t~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 435 TRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cccChHHhhccCCCeEECCCCC
Confidence 6666666666677777776654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=3.8e-17 Score=193.19 Aligned_cols=243 Identities=23% Similarity=0.226 Sum_probs=158.6
Q ss_pred CCCcEEEecCcccCCCCCcCCcccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCC
Q 001979 377 KNLRLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHL 456 (987)
Q Consensus 377 ~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~ 456 (987)
.+|+.|.+.+|.+.. +..+|++|++|++.+|.++.+|.. +.+|+.|++++|.+..+|.. ..+|+.|+|++|++.
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLT 295 (788)
T ss_pred cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc---hhhcCEEECcCCccc
Confidence 479999999998775 556788999999999999999864 57999999999999988863 357888999998765
Q ss_pred CCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcc
Q 001979 457 TKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEE 536 (987)
Q Consensus 457 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~ 536 (987)
. +|. ..++|+.|+|++|. +..+|.. ..+|+.|++++| .++.+|. ...+|+.|+|++|.++.
T Consensus 296 ~-LP~--~p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~-----------lp~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 296 S-LPV--LPPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNN-QLTSLPT-----------LPSGLQELSVSDNQLAS 356 (788)
T ss_pred c-ccc--cccccceeECCCCc-cccCCCC---cccccccccccC-ccccccc-----------cccccceEecCCCccCC
Confidence 4 333 24678888887764 3344432 234556666665 3444543 11345566666666555
Q ss_pred cCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCC
Q 001979 537 IPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLE 616 (987)
Q Consensus 537 lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~ 616 (987)
+|.. ..+ |+.|++++|. +..+|.. ..+|+.|++++|.+..+|.. .+
T Consensus 357 LP~l---p~~------------------------L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s 402 (788)
T PRK15387 357 LPTL---PSE------------------------LYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSLPVL---PS 402 (788)
T ss_pred CCCC---Ccc------------------------cceehhhccc-cccCccc---ccccceEEecCCcccCCCCc---cc
Confidence 5542 123 4444444432 2234432 23466666666666665543 24
Q ss_pred CCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCC
Q 001979 617 NLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRN 696 (987)
Q Consensus 617 ~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n 696 (987)
+|+.|++++|..... +. ...+|+.|++++|++.. +|..+..+++|+.|+|++|
T Consensus 403 ~L~~LdLS~N~LssI----------------------P~---l~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 403 ELKELMVSGNRLTSL----------------------PM---LPSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGN 455 (788)
T ss_pred CCCEEEccCCcCCCC----------------------Cc---chhhhhhhhhccCcccc--cChHHhhccCCCeEECCCC
Confidence 566677766653210 00 12357778888888864 8888889999999999999
Q ss_pred CCc-ccchhh
Q 001979 697 NFF-SLPASI 705 (987)
Q Consensus 697 ~l~-~lp~~i 705 (987)
.++ ..|..+
T Consensus 456 ~Ls~~~~~~L 465 (788)
T PRK15387 456 PLSERTLQAL 465 (788)
T ss_pred CCCchHHHHH
Confidence 888 344444
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.70 E-value=5.9e-19 Score=200.85 Aligned_cols=311 Identities=24% Similarity=0.306 Sum_probs=246.1
Q ss_pred hcCCCCCcEEEecCcccCCCCCcCCcccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCC
Q 001979 373 FSRMKNLRLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSH 452 (987)
Q Consensus 373 f~~~~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~ 452 (987)
...+.+|..|....+.+.. +...-..++.|..+.|++..+-..+.+.+|+++++++|+.+.+|+.+..+.+|+.++..+
T Consensus 195 ls~~~~l~~l~c~rn~ls~-l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSE-LEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANH 273 (1081)
T ss_pred hhhccchhhhhhhhcccce-EEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccc
Confidence 4455666666666555443 222335789999999999988888899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhc-cccceeecCC
Q 001979 453 SVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNA-KRLLQLHLDQ 531 (987)
Q Consensus 453 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l-~~L~~L~L~~ 531 (987)
|++...+-.+....+|+.|.+..| .+..+|+..+.++.|++|+|..| .+.++|..+ +... ..|+.|..+.
T Consensus 274 N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~-------l~v~~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 274 NRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNF-------LAVLNASLNTLNVSS 344 (1081)
T ss_pred hhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhc-cccccchHH-------HhhhhHHHHHHhhhh
Confidence 998444445888999999999885 56788888999999999999997 788888743 2233 3477888888
Q ss_pred cCCcccCcc-ccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccc-cccCCCCCcEeeCCCCCCCCCC
Q 001979 532 TSIEEIPPS-IKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPE-NLGHIASLENLDLGGTAIRRPP 609 (987)
Q Consensus 532 ~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~~p 609 (987)
+.+..+|.. =..++.|+.|.+.+|......-+-+.+.++|+.|+|++|. +..+|+ .+.+++.|++|+|+||.++.+|
T Consensus 345 n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp 423 (1081)
T KOG0618|consen 345 NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLP 423 (1081)
T ss_pred ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhh
Confidence 888888843 2346779999999998887665568889999999999975 566665 5788999999999999999999
Q ss_pred ccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCC
Q 001979 610 STIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALT 689 (987)
Q Consensus 610 ~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~ 689 (987)
.++..+..|+.|...+|.... +|.+..++.|+.+|+|.|++....+|..... ++|+
T Consensus 424 ~tva~~~~L~tL~ahsN~l~~-----------------------fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~Lk 479 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQLLS-----------------------FPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLK 479 (1081)
T ss_pred HHHHhhhhhHHHhhcCCceee-----------------------chhhhhcCcceEEecccchhhhhhhhhhCCC-cccc
Confidence 999999999999988876432 2467888999999999999988777766554 8999
Q ss_pred EEeCCCCC-CcccchhhhccCCCcEEecCC
Q 001979 690 NLTLSRNN-FFSLPASINQLSRLETLNIDY 718 (987)
Q Consensus 690 ~L~L~~n~-l~~lp~~i~~l~~L~~L~L~~ 718 (987)
+|||+||. +..--..+..+.++...++.-
T Consensus 480 yLdlSGN~~l~~d~~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 480 YLDLSGNTRLVFDHKTLKVLKSLSQMDITL 509 (1081)
T ss_pred eeeccCCcccccchhhhHHhhhhhheeccc
Confidence 99999995 332223445556666666554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=1.9e-16 Score=188.66 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=39.1
Q ss_pred CCcEEEecCcccCCCCCcCCcccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCC
Q 001979 378 NLRLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHL 456 (987)
Q Consensus 378 ~Lr~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~ 456 (987)
+...|+++++.+..-+..+|+.++.|++.+|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|.+.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccC
Confidence 34556666555544444455556666666666555555432 355555555555555544332 24555555555433
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=4.5e-16 Score=185.54 Aligned_cols=246 Identities=19% Similarity=0.269 Sum_probs=182.4
Q ss_pred cccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCC
Q 001979 398 DELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGC 476 (987)
Q Consensus 398 ~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~ 476 (987)
++...|++.++.+.++|..+ ++.|+.|++++|.++.+|..+. .+|+.|+|++|.+.. +|. + .++|+.|+|++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTS-IPATL--PDTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcccc-CChhh--hccccEEECcCC
Confidence 45677888888999998765 5689999999999999887654 589999999987654 443 3 247999999987
Q ss_pred cCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCC
Q 001979 477 TNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCK 556 (987)
Q Consensus 477 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~ 556 (987)
.. ..+|..+. ++|+.|++++| .+..+|..+ ..+|+.|++++|.++.+|..+. ++|+.|++++|.
T Consensus 252 ~L-~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l----------~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~ 315 (754)
T PRK15370 252 RI-TELPERLP--SALQSLDLFHN-KISCLPENL----------PEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS 315 (754)
T ss_pred cc-CcCChhHh--CCCCEEECcCC-ccCcccccc----------CCCCcEEECCCCccccCcccch--hhHHHHHhcCCc
Confidence 64 46776654 57999999876 666788644 2579999999999998887553 578889999876
Q ss_pred CCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccc
Q 001979 557 KLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSL 636 (987)
Q Consensus 557 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~ 636 (987)
.. .+|..+ .++|+.|++++|. +..+|..+. ++|+.|++++|.+..+|..+ .++|+.|++++|.....
T Consensus 316 Lt-~LP~~l--~~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~L----- 382 (754)
T PRK15370 316 LT-ALPETL--PPGLKTLEAGENA-LTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNL----- 382 (754)
T ss_pred cc-cCCccc--cccceeccccCCc-cccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCC-----
Confidence 54 466544 3689999998875 455776654 68999999999998888765 36899999998864311
Q ss_pred cccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccc----cCCCCCCCEEeCCCCCCc
Q 001979 637 IWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPND----LGSLSALTNLTLSRNNFF 699 (987)
Q Consensus 637 ~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~----l~~l~~L~~L~L~~n~l~ 699 (987)
++.+ ..+|+.|++++|++.. +|.. ...++++..|+|.+|.++
T Consensus 383 -----------------P~~l--~~sL~~LdLs~N~L~~--LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 383 -----------------PENL--PAALQIMQASRNNLVR--LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -----------------CHhH--HHHHHHHhhccCCccc--CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 1111 1368888899988853 5544 344578888888888876
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=1.7e-15 Score=157.38 Aligned_cols=241 Identities=19% Similarity=0.207 Sum_probs=159.6
Q ss_pred CcccCCCCCcCCcccceEEecCCCCCCCCCC-C-CCCCceEEEcCCCCcccc-ccccCCCCCCCEEecCCCCCCCCCCC-
Q 001979 386 DVCLRHGIEYLPDELRLLKWHGYPLRSLPSN-F-QPERLFKLNICYSLVEQL-WQGVQNMRHLKFIKLSHSVHLTKTPD- 461 (987)
Q Consensus 386 ~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~- 461 (987)
+-.+.+.+..+|.+...++++.|.|++||.. | .+++|+.|+|++|.|+.+ |.+|+.+..|..|-+-++...+.+|.
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 3345556778899999999999999999864 5 899999999999999988 77999999998888777444555554
Q ss_pred -CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCch-hh----hhhH--------------------
Q 001979 462 -FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAE-IE----WASL-------------------- 515 (987)
Q Consensus 462 -~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-i~----~~~l-------------------- 515 (987)
|.++..|+.|.+.-|.........+..+++|..|.+.+| .+..++.. +. ...+
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 888888888888776655544555666666666666554 33333221 00 0000
Q ss_pred -----------------------------HHhhhccccceeecCCc-CCcccCc-cccCCCCCCEEeccCCCCCcccCcc
Q 001979 516 -----------------------------EIVQNAKRLLQLHLDQT-SIEEIPP-SIKFLSRLTVLTLRDCKKLVSLPSS 564 (987)
Q Consensus 516 -----------------------------~~~~~l~~L~~L~L~~~-~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~ 564 (987)
.+...++.+..-..+.+ .....|. .|..+++|+.|+|++|+....-+.+
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 00000111110001111 1112222 2667888888888888877777777
Q ss_pred CCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCC-CccccCCCCCcEEEccCCC
Q 001979 565 ISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRP-PSTIVLLENLKELSFHGCK 627 (987)
Q Consensus 565 l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~-p~~i~~l~~L~~L~L~~~~ 627 (987)
|..+..++.|.|.+|+.-..-...|.++..|+.|+|.+|+|+.+ |..+..+.+|.+|.+-+|+
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 88888888888888654333334567788888888888888865 6667777788888876554
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=7.1e-16 Score=141.82 Aligned_cols=171 Identities=21% Similarity=0.374 Sum_probs=125.7
Q ss_pred CCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccC
Q 001979 410 LRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLL 489 (987)
Q Consensus 410 l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l 489 (987)
+..+|..|++.+...|.+++|+++.+|..+..+.+|+.|++++|++...++.++.+++|++|+++- +.+..+|..+|.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~ 101 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSF 101 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCC
Confidence 345677778888888888888888888888888888888888888877777788888888888876 4566788888888
Q ss_pred CCCcEEeCcCCCCC-ccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCC
Q 001979 490 KRLKVLNMKECIRI-KSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDL 568 (987)
Q Consensus 490 ~~L~~L~L~~c~~l-~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l 568 (987)
+.|+.|||..|..- .++|..+ -.|+.|+.|++++|.++-+|..++++++|+.|.+.+|..
T Consensus 102 p~levldltynnl~e~~lpgnf--------f~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl----------- 162 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNF--------FYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL----------- 162 (264)
T ss_pred chhhhhhccccccccccCCcch--------hHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch-----------
Confidence 88888888876433 3567665 567788888888888888888777777777776666432
Q ss_pred CCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccC
Q 001979 569 RSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVL 614 (987)
Q Consensus 569 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~ 614 (987)
-++|..++.+..|++|.+.+|.++.+|..++.
T Consensus 163 --------------l~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 163 --------------LSLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred --------------hhCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 23455555555555555555555555554443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.9e-15 Score=139.06 Aligned_cols=59 Identities=36% Similarity=0.555 Sum_probs=35.8
Q ss_pred CccccCCCCCCCEEeCCCCCCcccchhhhccCCCcEEecCCCcccccCCCCcccccccccccc
Q 001979 678 IPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCNRLKALPELPASIDGLFAHNC 740 (987)
Q Consensus 678 lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~C 740 (987)
+|..++.+++|+.|.+..|.+-++|..++.+..|+.|.|.+|+ ++ .+||.|..|++.+-
T Consensus 142 lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr-l~---vlppel~~l~l~~~ 200 (264)
T KOG0617|consen 142 LPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-LT---VLPPELANLDLVGN 200 (264)
T ss_pred CChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce-ee---ecChhhhhhhhhhh
Confidence 5556666666666666666666677777777777777777643 33 33455555554443
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=4.2e-12 Score=161.72 Aligned_cols=295 Identities=13% Similarity=0.110 Sum_probs=185.1
Q ss_pred CCCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHH
Q 001979 5 LLSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQ 84 (987)
Q Consensus 5 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 84 (987)
+|..+..+|-|..-++.+.+ ....+++.|.|++|.||||++..+.++ ++ .+.|+..-. ...+...+.
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~----~~-~~~w~~l~~---~d~~~~~f~ 75 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG----KN-NLGWYSLDE---SDNQPERFA 75 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh----CC-CeEEEecCc---ccCCHHHHH
Confidence 56677888988876666543 235689999999999999999998853 44 688986322 122333444
Q ss_pred HHHHHHHhcCCCc------------ccccchhhHHHHHHHhc--CCceEEEEeCCCChH------HHHHHhcCCCCCCCC
Q 001979 85 EQLVSEILLDKNV------------KIWDVHKGCHMIRIKLR--HKRVLLVIDDVDEFD------QLQALAGQRDWFGLG 144 (987)
Q Consensus 85 ~~ll~~l~~~~~~------------~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~g 144 (987)
..++..+...... ...+.......+...+. +.+++|||||+...+ .+..+.. ...++
T Consensus 76 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~---~~~~~ 152 (903)
T PRK04841 76 SYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR---HQPEN 152 (903)
T ss_pred HHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH---hCCCC
Confidence 4444443211100 00111122223333333 678999999996532 2333333 33567
Q ss_pred cEEEEEeCCcccccc--c-CcCceEEcC----CCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhh
Q 001979 145 SRIIITTRDRHLLVR--C-DVEDTYMVE----KLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGS 217 (987)
Q Consensus 145 s~IiiTtR~~~v~~~--~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~ 217 (987)
.++|||||...-... . ......++. +|+.+|+.++|........ ..+.+.++.+.++|.|+++..++.
T Consensus 153 ~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-----~~~~~~~l~~~t~Gwp~~l~l~~~ 227 (903)
T PRK04841 153 LTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-----EAAESSRLCDDVEGWATALQLIAL 227 (903)
T ss_pred eEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-----CHHHHHHHHHHhCChHHHHHHHHH
Confidence 889899998532211 1 112345566 9999999999976542211 235678999999999999999887
Q ss_pred hhcCCCHHHHHHHHHhhhcCCCchHHHHH-HHhHhCccHHHHHHHhheeeccCCCCHHHHHHHHHhCCCCccccchhhhc
Q 001979 218 FLFARSKAEWKDALDRLKYVPDQKIFEIL-KISYDGLQETEKKIFLDIACFFKGKDKDQVRELLDSCDFYPEIGISVLID 296 (987)
Q Consensus 218 ~L~~~~~~~w~~~l~~l~~~~~~~i~~~l-~~sy~~L~~~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~~~~~~L~~ 296 (987)
.+...... .......+...+...+...+ .-.++.||++.+++++.+|++. .++.+.+..+.+.. .....++.|.+
T Consensus 228 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~--~~~~~L~~l~~ 303 (903)
T PRK04841 228 SARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEE--NGQMRLEELER 303 (903)
T ss_pred HHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCC--cHHHHHHHHHH
Confidence 76543210 01111222222234455544 3448999999999999999986 66666555554322 23556888999
Q ss_pred ccceEE-e---CCeEEecHHHHHHHHHHHhhc
Q 001979 297 KCIITL-S---NNILCMHDLIQDMGREIVRQQ 324 (987)
Q Consensus 297 ~~Li~~-~---~~~~~mHdll~~~~~~i~~~~ 324 (987)
.+++.. . ..+|+.|++++++.+.....+
T Consensus 304 ~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 304 QGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 998653 2 237999999999999887544
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=2.8e-15 Score=155.69 Aligned_cols=145 Identities=21% Similarity=0.319 Sum_probs=118.5
Q ss_pred EEecCCCCCCCCCCCCCCCceEEEcCCCCcccccc-ccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCc
Q 001979 403 LKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQ-GVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLS 480 (987)
Q Consensus 403 L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~ 480 (987)
.+..+-.+..+|.+. ++.-++++|..|.|+.+|+ .|+.+++||.|||++|.+....|+ |.++++|..|.+-+++.+.
T Consensus 51 VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 455666788888776 5678899999999999976 789999999999999999988887 9999999999999888888
Q ss_pred cccCc-cccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCc-cccCCCCCCEEeccCCC
Q 001979 481 FVHPS-IGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPP-SIKFLSRLTVLTLRDCK 556 (987)
Q Consensus 481 ~~~~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~ 556 (987)
.+|.. |+.|..|+.|.+.-| .+..++.. .+..+++|..|.+.+|.+..++. .+..+..++.+.+..|.
T Consensus 130 ~l~k~~F~gL~slqrLllNan-~i~Cir~~-------al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNAN-HINCIRQD-------ALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChh-hhcchhHH-------HHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 88874 888999999888876 44444442 35788889999999999988887 67778888888776654
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.42 E-value=1.7e-14 Score=160.25 Aligned_cols=180 Identities=24% Similarity=0.256 Sum_probs=82.1
Q ss_pred cceeecCCcCCc-----ccCccccCC-CCCCEEeccCCCCCc----ccCccCCCCCCCCEEEecCCCCCC----cccccc
Q 001979 524 LLQLHLDQTSIE-----EIPPSIKFL-SRLTVLTLRDCKKLV----SLPSSISDLRSLKVLNLNGCSKLE----EVPENL 589 (987)
Q Consensus 524 L~~L~L~~~~i~-----~lp~~i~~l-~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~l~~c~~l~----~lp~~l 589 (987)
|++|++++|.+. .+...+..+ ++|+.|++++|.... .++..+..+++|++|++++|.... .++..+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 555555544443 122223334 555555555554431 122233444555555555554331 122333
Q ss_pred cCCCCCcEeeCCCCCCCCC-----CccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCccc
Q 001979 590 GHIASLENLDLGGTAIRRP-----PSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLS 664 (987)
Q Consensus 590 ~~l~~L~~L~L~~~~i~~~-----p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~ 664 (987)
..+++|+.|++++|.+... +..+..+++|+.|++++|.........+. .......+.|+
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~----------------~~~~~~~~~L~ 253 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA----------------SALLSPNISLL 253 (319)
T ss_pred HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH----------------HHHhccCCCce
Confidence 4445566666665555421 22344455566666665542211000000 00001235666
Q ss_pred EEecCCCCCCCC---CCccccCCCCCCCEEeCCCCCCcc-----cchhhhcc-CCCcEEecCCC
Q 001979 665 RLDLGDCNLQEG---AIPNDLGSLSALTNLTLSRNNFFS-----LPASINQL-SRLETLNIDYC 719 (987)
Q Consensus 665 ~L~Ls~~~l~~~---~lp~~l~~l~~L~~L~L~~n~l~~-----lp~~i~~l-~~L~~L~L~~c 719 (987)
+|++++|.+.+. .+...+..+++|+.|++++|.+.. +...+... +.|+.|++.++
T Consensus 254 ~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 254 TLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred EEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 666666665421 122334445666777777776662 22233344 56666666654
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.37 E-value=5.7e-14 Score=156.02 Aligned_cols=240 Identities=20% Similarity=0.187 Sum_probs=149.7
Q ss_pred CCCCCcccEEeccCCcCCc----cccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCc-c
Q 001979 462 FTGVPKLERLVLDGCTNLS----FVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIE-E 536 (987)
Q Consensus 462 ~~~l~~L~~L~L~~~~~l~----~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~-~ 536 (987)
+..+.+|++|++++|.... .++..+...+.|++|+++++... ..+..+. .....+..+++|+.|++++|.+. .
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~-~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG-RIPRGLQ-SLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC-CcchHHH-HHHHHHHhcCceeEEEccCCCCChh
Confidence 3344556666666655322 34445566677778877776332 1222111 11133456778888888888776 3
Q ss_pred cCccccCC---CCCCEEeccCCCCCc----ccCccCCCC-CCCCEEEecCCCCCC----cccccccCCCCCcEeeCCCCC
Q 001979 537 IPPSIKFL---SRLTVLTLRDCKKLV----SLPSSISDL-RSLKVLNLNGCSKLE----EVPENLGHIASLENLDLGGTA 604 (987)
Q Consensus 537 lp~~i~~l---~~L~~L~L~~~~~l~----~lp~~l~~l-~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~L~~~~ 604 (987)
.+..+..+ ++|++|++++|.... .+...+..+ ++|+.|++++|.... .++..+..+++|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 33334444 449999999887652 233345566 889999999987652 344566777889999999888
Q ss_pred CCC-----CCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCc
Q 001979 605 IRR-----PPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIP 679 (987)
Q Consensus 605 i~~-----~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp 679 (987)
+++ ++..+..+++|+.|++++|....... ......+..+++|+.|++++|.+.+..+.
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-----------------~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-----------------SALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-----------------HHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 773 23344556788899988886432100 11123355678888888888887542222
Q ss_pred cccC----CCCCCCEEeCCCCCCc-----ccchhhhccCCCcEEecCCCc
Q 001979 680 NDLG----SLSALTNLTLSRNNFF-----SLPASINQLSRLETLNIDYCN 720 (987)
Q Consensus 680 ~~l~----~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 720 (987)
.... ..+.|+.|++++|.++ .++..+..+++|+.|++++|+
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 1111 2478888888888875 345566667888888888865
No 26
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.32 E-value=1e-10 Score=133.69 Aligned_cols=249 Identities=15% Similarity=0.128 Sum_probs=151.6
Q ss_pred CCCCCccccchhHHHHHHHhcCC--CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC-cceEEEEehHhhhhccCHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTG--LDEARILGICGMGGIGKTTLARFVFDNISYQFD-DGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l 83 (987)
..|+.++||+++++++...+... ......+.|+|++|+|||++++.++++++.... ...++++ .........+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTRYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCHHHH
Confidence 35788999999999999988432 233456789999999999999999998766542 1345554 2223345567
Q ss_pred HHHHHHHHhcCCC-cccccchhhHHHHHHHhc--CCceEEEEeCCCChH------HHHHHhcCCCCCCCCc--EEEEEeC
Q 001979 84 QEQLVSEILLDKN-VKIWDVHKGCHMIRIKLR--HKRVLLVIDDVDEFD------QLQALAGQRDWFGLGS--RIIITTR 152 (987)
Q Consensus 84 ~~~ll~~l~~~~~-~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs--~IiiTtR 152 (987)
..+++.++..... ....+..+....+.+.+. ++.++||||+++... .+..+....... +++ .+|.++.
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~ 181 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISS 181 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEEC
Confidence 7777777644211 112234455566666664 456899999997743 355554432211 233 3666666
Q ss_pred CcccccccC-------cCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHH----hCCCchhHHHHhhhh--
Q 001979 153 DRHLLVRCD-------VEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNY----ADGLPLALEILGSFL-- 219 (987)
Q Consensus 153 ~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~----~~G~PLal~~l~~~L-- 219 (987)
+..+..... ....+.+++++.++..+++..++-....+..-..+..+.+++. .|..+.|+.++-...
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 654332211 1246789999999999999887632211111111233334333 455667776654321
Q ss_pred ---cC---CCHHHHHHHHHhhhcCCCchHHHHHHHhHhCccHHHHHHHhheeec
Q 001979 220 ---FA---RSKAEWKDALDRLKYVPDQKIFEILKISYDGLQETEKKIFLDIACF 267 (987)
Q Consensus 220 ---~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f 267 (987)
++ -+.+.++.+++... .....-.+.+||.++|..+..++..
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11 14566666666551 2334556889999999888776644
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=1e-09 Score=124.12 Aligned_cols=250 Identities=16% Similarity=0.170 Sum_probs=147.8
Q ss_pred CCCCCccccchhHHHHHHHhcC--CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC-----cceEEEEehHhhhhccC
Q 001979 7 SASEKLVGMDYRLEQIYLMLGT--GLDEARILGICGMGGIGKTTLARFVFDNISYQFD-----DGSSFLANVREVSQTRG 79 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-----~~~~~~~~~~~~~~~~~ 79 (987)
..|+.++||++++++|...+.. .......+.|+|++|+|||++|+.+++.+..... ...+|++ ......
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQILDT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCCCC
Confidence 4568999999999999998863 1233457899999999999999999997654322 1355665 223334
Q ss_pred HHHHHHHHHHHHhc--CC-CcccccchhhHHHHHHHhc--CCceEEEEeCCCChH-----HHHHHhcCCCC-C--CCCcE
Q 001979 80 LVALQEQLVSEILL--DK-NVKIWDVHKGCHMIRIKLR--HKRVLLVIDDVDEFD-----QLQALAGQRDW-F--GLGSR 146 (987)
Q Consensus 80 ~~~l~~~ll~~l~~--~~-~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~-----~~~~l~~~~~~-~--~~gs~ 146 (987)
...+..+++.++.. .. .....+..+....+.+.+. +++++||||+++... .+..+.....+ . +....
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 55677777777642 11 1111122334455555553 567899999998761 23444332111 1 12334
Q ss_pred EEEEeCCcccccccC-------cCceEEcCCCCHHHHHHHHHHhhc---cCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 147 IIITTRDRHLLVRCD-------VEDTYMVEKLNYNEALHLFSWKAF---RKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 147 IiiTtR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
+|.+|++........ ....+.+++++.+|..+++..++- ....-.++..+.+.+++....|.|-.+..+.
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 555665443221110 124688999999999999998863 1122233334455667777788884433222
Q ss_pred hh-h-----cC---CCHHHHHHHHHhhhcCCCchHHHHHHHhHhCccHHHHHHHhheeec
Q 001979 217 SF-L-----FA---RSKAEWKDALDRLKYVPDQKIFEILKISYDGLQETEKKIFLDIACF 267 (987)
Q Consensus 217 ~~-L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f 267 (987)
.. . .+ -+.+..+.+.+.+. .....-+..+||.++|.++..++..
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~ 300 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANL 300 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 1 11 14455555555441 2334456778999988777766543
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.18 E-value=2.5e-10 Score=125.50 Aligned_cols=270 Identities=17% Similarity=0.099 Sum_probs=149.9
Q ss_pred CCccccchhHHHHHHHhcCC---CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHH
Q 001979 10 EKLVGMDYRLEQIYLMLGTG---LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQ 86 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~---~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (987)
++|||++..++++..++... ....+.+.|+|++|+|||+||+.+++.+...+. ... .........+. .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~----~~~~~~~~~l~-~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITS----GPALEKPGDLA-A 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eec----cchhcCchhHH-H
Confidence 57999999999999888631 233456889999999999999999998754332 111 00001111111 1
Q ss_pred HHHHHhcCCCcccccc----hhhHHHHHHHhcCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCccccccc--
Q 001979 87 LVSEILLDKNVKIWDV----HKGCHMIRIKLRHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDRHLLVRC-- 160 (987)
Q Consensus 87 ll~~l~~~~~~~~~~~----~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~~-- 160 (987)
.+..+....-.-+.+. ....+.+...+.+.+..+|+|+..+..++... ..+.+-|..||+...+....
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHh
Confidence 1111100000000000 01112233333334444444443333222211 12345555677765443321
Q ss_pred CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhhhcCCCHHHHHHHHH-hhhcCCC
Q 001979 161 DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSFLFARSKAEWKDALD-RLKYVPD 239 (987)
Q Consensus 161 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~~~~~w~~~l~-~l~~~~~ 239 (987)
.....+++++++.+|..+++...+...... -..+....|++.|+|.|-.+..++..+ |..+.. .-.....
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~ 219 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINR 219 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCH
Confidence 123568999999999999999887543222 224667899999999997665555432 111100 0000111
Q ss_pred ---chHHHHHHHhHhCccHHHHHHHh-heeeccCC-CCHHHHHHHHHhCCCCccccch-hhhcccceEEe
Q 001979 240 ---QKIFEILKISYDGLQETEKKIFL-DIACFFKG-KDKDQVRELLDSCDFYPEIGIS-VLIDKCIITLS 303 (987)
Q Consensus 240 ---~~i~~~l~~sy~~L~~~~k~~fl-~la~f~~~-~~~~~l~~~~~~~~~~~~~~~~-~L~~~~Li~~~ 303 (987)
..+...+...|.++++.++..+. .++.+..+ ...+.+...++......+..++ .|++++||...
T Consensus 220 ~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 11222245568889998888766 44555432 5677777777776666666677 69999999744
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.15 E-value=3.8e-10 Score=124.74 Aligned_cols=258 Identities=17% Similarity=0.128 Sum_probs=150.9
Q ss_pred CCCCCCccccchhHHHHHHHhcC---CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGT---GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVA 82 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 82 (987)
|...++|||++..++.+..++.. .....+.+.|+|++|+||||+|+.+++.+...+. +.. ..... ....
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~----~~~-~~~~~---~~~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR----ITS-GPALE---KPGD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE----EEe-ccccc---ChHH
Confidence 34557899999999999888753 1234567889999999999999999998754332 111 00000 0001
Q ss_pred HHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH--HHHHHhcCCC-------------------CC
Q 001979 83 LQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD--QLQALAGQRD-------------------WF 141 (987)
Q Consensus 83 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~l~~~~~-------------------~~ 141 (987)
...++.. + ++.-+|++||++... ..+.+..... ..
T Consensus 93 -l~~~l~~----------------------l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 93 -LAAILTN----------------------L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred -HHHHHHh----------------------c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 1111111 1 123355566654321 1111111000 01
Q ss_pred CCCcEEEEEeCCccccccc--CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhhh
Q 001979 142 GLGSRIIITTRDRHLLVRC--DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSFL 219 (987)
Q Consensus 142 ~~gs~IiiTtR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L 219 (987)
.+.+-|..|||...+.... .....+++++++.++..+++...+......- ..+.+..|++.|+|.|-.+..+...+
T Consensus 149 ~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~--~~~~~~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI--DEEGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred CCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 1234455666655443322 1234689999999999999998875543332 23678999999999996555554432
Q ss_pred cCCCHHHHHHHHHhhhcCCC---chHHHHHHHhHhCccHHHHHHHh-heeeccCC-CCHHHHHHHHHhCCCCccccch-h
Q 001979 220 FARSKAEWKDALDRLKYVPD---QKIFEILKISYDGLQETEKKIFL-DIACFFKG-KDKDQVRELLDSCDFYPEIGIS-V 293 (987)
Q Consensus 220 ~~~~~~~w~~~l~~l~~~~~---~~i~~~l~~sy~~L~~~~k~~fl-~la~f~~~-~~~~~l~~~~~~~~~~~~~~~~-~ 293 (987)
..|...- .-..... ....+.+...+.+|++..+..+. .+..|..+ ...+.+...+.......+..++ .
T Consensus 227 -----~~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~ 300 (328)
T PRK00080 227 -----RDFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPY 300 (328)
T ss_pred -----HHHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHH
Confidence 1121110 0011111 12334456667889999888875 55556543 5677888887766666666666 8
Q ss_pred hhcccceEEe
Q 001979 294 LIDKCIITLS 303 (987)
Q Consensus 294 L~~~~Li~~~ 303 (987)
|++.+||...
T Consensus 301 Li~~~li~~~ 310 (328)
T PRK00080 301 LIQQGFIQRT 310 (328)
T ss_pred HHHcCCcccC
Confidence 9999999744
No 30
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.15 E-value=1.4e-09 Score=125.32 Aligned_cols=297 Identities=14% Similarity=0.131 Sum_probs=183.5
Q ss_pred CCCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHH
Q 001979 5 LLSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQ 84 (987)
Q Consensus 5 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 84 (987)
+|..+.+.|-|..-++.+.. + .+.|.+.|..|+|.||||++.++...... -. .+.|++.-.+ ..+.....
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~----~-~~~RL~li~APAGfGKttl~aq~~~~~~~-~~-~v~Wlslde~---dndp~rF~ 83 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRR----A-NDYRLILISAPAGFGKTTLLAQWRELAAD-GA-AVAWLSLDES---DNDPARFL 83 (894)
T ss_pred CCCCcccccccHHHHHHHhc----C-CCceEEEEeCCCCCcHHHHHHHHHHhcCc-cc-ceeEeecCCc---cCCHHHHH
Confidence 34556677777665555443 2 46799999999999999999999884333 33 6899874322 34455566
Q ss_pred HHHHHHHhcCCCcc------------cccchhhHHHHHHHhc--CCceEEEEeCCCC---h---HHHHHHhcCCCCCCCC
Q 001979 85 EQLVSEILLDKNVK------------IWDVHKGCHMIRIKLR--HKRVLLVIDDVDE---F---DQLQALAGQRDWFGLG 144 (987)
Q Consensus 85 ~~ll~~l~~~~~~~------------~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~---~---~~~~~l~~~~~~~~~g 144 (987)
..++..+....... ..+.......+...+. .++..+||||..- . +.++.+... ..++
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~ 160 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APEN 160 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCC
Confidence 66666543211111 1122223333444333 4689999999733 2 235555554 3578
Q ss_pred cEEEEEeCCccccccc---CcCceEEcC----CCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhh
Q 001979 145 SRIIITTRDRHLLVRC---DVEDTYMVE----KLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGS 217 (987)
Q Consensus 145 s~IiiTtR~~~v~~~~---~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~ 217 (987)
-..|||||...-.... -.+...++. .++.+|+.++|..... .+-+ ...++.+.+...|-+-|+..++-
T Consensus 161 l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l~Ld--~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 161 LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---LPLD--AADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred eEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---CCCC--hHHHHHHHhhcccHHHHHHHHHH
Confidence 8999999987432211 112233433 5899999999976641 2212 24588999999999999999988
Q ss_pred hhcCC-CHHHHHHHHHhhhcCCCchHH-HHHHHhHhCccHHHHHHHhheeeccCCCCHHHHHHHHHhCCCCccccchhhh
Q 001979 218 FLFAR-SKAEWKDALDRLKYVPDQKIF-EILKISYDGLQETEKKIFLDIACFFKGKDKDQVRELLDSCDFYPEIGISVLI 295 (987)
Q Consensus 218 ~L~~~-~~~~w~~~l~~l~~~~~~~i~-~~l~~sy~~L~~~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~~~~~~L~ 295 (987)
.+++. +.+.-...+. .. ...+. -...--+|.||++.|.+++-+|++.. +.-+-..++.+.. ....-++.|.
T Consensus 236 a~~~~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~--ng~amLe~L~ 308 (894)
T COG2909 236 ALRNNTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEE--NGQAMLEELE 308 (894)
T ss_pred HccCCCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCC--cHHHHHHHHH
Confidence 88733 3322222111 11 11222 12334578999999999999999843 1222222222211 2233477888
Q ss_pred cccceEEe----CCeEEecHHHHHHHHHHHhhcCC
Q 001979 296 DKCIITLS----NNILCMHDLIQDMGREIVRQQSP 326 (987)
Q Consensus 296 ~~~Li~~~----~~~~~mHdll~~~~~~i~~~~~~ 326 (987)
+++|.-+. +++|+.|.++.|+.+...+.+.+
T Consensus 309 ~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~ 343 (894)
T COG2909 309 RRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELA 343 (894)
T ss_pred hCCCceeeecCCCceeehhHHHHHHHHhhhccccC
Confidence 88876643 67999999999999998876543
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=7.1e-11 Score=143.64 Aligned_cols=248 Identities=22% Similarity=0.314 Sum_probs=162.5
Q ss_pred cccceEEecCCCCCCCCCCCCCCCceEEEcCCCC--cccccc-ccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEec
Q 001979 398 DELRLLKWHGYPLRSLPSNFQPERLFKLNICYSL--VEQLWQ-GVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVL 473 (987)
Q Consensus 398 ~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~--i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L 473 (987)
...|.+.+.++.+..++.....++|++|-+..|. +..++. .|..++.|++|||++|.....+|. ++.+-+|++|+|
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 4678888888888888888877788888888875 555544 367789999999998888888887 777889999999
Q ss_pred cCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCc---ccCccccCCCCCCEE
Q 001979 474 DGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIE---EIPPSIKFLSRLTVL 550 (987)
Q Consensus 474 ~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L 550 (987)
++ +.+..+|..++++++|.+||+..+..+..+|... ..+.+|++|.+...... ..-..+.++.+|+.+
T Consensus 603 ~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~--------~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 603 SD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL--------LELQSLRVLRLPRSALSNDKLLLKELENLEHLENL 673 (889)
T ss_pred cC-CCccccchHHHHHHhhheeccccccccccccchh--------hhcccccEEEeeccccccchhhHHhhhcccchhhh
Confidence 88 5567888889999999999998877777765433 56888888888776532 112224455555555
Q ss_pred eccCCCCCcccCccCCCCCCCC----EEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCc-c-----ccC-CCCCc
Q 001979 551 TLRDCKKLVSLPSSISDLRSLK----VLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPS-T-----IVL-LENLK 619 (987)
Q Consensus 551 ~L~~~~~l~~lp~~l~~l~~L~----~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~-~-----i~~-l~~L~ 619 (987)
....+.. .+-..+..++.|. .+.+.+ ......+..+..+.+|+.|.+.++.+.+... . ... ++++.
T Consensus 674 s~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~ 750 (889)
T KOG4658|consen 674 SITISSV--LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLS 750 (889)
T ss_pred eeecchh--HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHH
Confidence 5544332 1111122333333 222222 2334456677888899999988887764321 1 111 33455
Q ss_pred EEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCc
Q 001979 620 ELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIP 679 (987)
Q Consensus 620 ~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp 679 (987)
.+.+.+|..... +.+....++|+.|.+..|...+..+|
T Consensus 751 ~~~~~~~~~~r~----------------------l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 751 KVSILNCHMLRD----------------------LTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred HHHhhccccccc----------------------cchhhccCcccEEEEecccccccCCC
Confidence 555555543322 11223457899999999988665444
No 32
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.12 E-value=2.6e-10 Score=120.26 Aligned_cols=197 Identities=18% Similarity=0.186 Sum_probs=100.8
Q ss_pred ccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHH------HH
Q 001979 12 LVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVAL------QE 85 (987)
Q Consensus 12 ~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l------~~ 85 (987)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+..+..-. .++|+......... ..... ..
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~-~~~y~~~~~~~~~~-~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGY-KVVYIDFLEESNES-SLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EE-CCCHHCCTTBSHHH-HHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC-cEEEEecccchhhh-HHHHHHHHHHHHH
Confidence 799999999999999753 3478899999999999999999998744322 34444322111110 01111 11
Q ss_pred HHHHHH---hcCCCc------ccccchhhHHHHHHHhc--CCceEEEEeCCCChH-----------HHHHHhcCCCCCCC
Q 001979 86 QLVSEI---LLDKNV------KIWDVHKGCHMIRIKLR--HKRVLLVIDDVDEFD-----------QLQALAGQRDWFGL 143 (987)
Q Consensus 86 ~ll~~l---~~~~~~------~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~-----------~~~~l~~~~~~~~~ 143 (987)
.+...+ ...... ...........+.+.+. +++++||+||++... .+..+..... ...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccC
Confidence 111111 111110 01122233334444443 345999999986644 1222222211 123
Q ss_pred CcEEEEEeCCcccccc--------cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHH
Q 001979 144 GSRIIITTRDRHLLVR--------CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEI 214 (987)
Q Consensus 144 gs~IiiTtR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 214 (987)
...+|++.....+... .+....+.+++|+.+++.+++...+-.. ..-+...+..++|+..+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 4445555554433322 2333469999999999999998865332 11112345679999999999988764
No 33
>PF05729 NACHT: NACHT domain
Probab=99.04 E-value=1.8e-09 Score=107.08 Aligned_cols=143 Identities=24% Similarity=0.351 Sum_probs=85.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCc-----ceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDD-----GSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHM 108 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~-----~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 108 (987)
|++.|.|.+|+||||+++.++.++...... ..+|+. .+..........+...+.... ..... .... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~-~~~~~---~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQL-PESIA---PIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhh-ccchh---hhHH---H
Confidence 578999999999999999999987655421 333443 333333222223333333331 11111 1111 1
Q ss_pred HHH-HhcCCceEEEEeCCCChHH---------HHHHhcC-CC-CCCCCcEEEEEeCCccc---ccccCcCceEEcCCCCH
Q 001979 109 IRI-KLRHKRVLLVIDDVDEFDQ---------LQALAGQ-RD-WFGLGSRIIITTRDRHL---LVRCDVEDTYMVEKLNY 173 (987)
Q Consensus 109 l~~-~L~~k~~LlVlDdv~~~~~---------~~~l~~~-~~-~~~~gs~IiiTtR~~~v---~~~~~~~~~~~l~~L~~ 173 (987)
+.. ..+.++++||+|++|.... +..+... .. ...++.++|||+|.... .........+++++|++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 222 2257899999999976432 1122211 11 13568999999998765 22334446899999999
Q ss_pred HHHHHHHHHhh
Q 001979 174 NEALHLFSWKA 184 (987)
Q Consensus 174 ~ea~~Lf~~~a 184 (987)
++..+++.++.
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999997653
No 34
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.00 E-value=2.2e-08 Score=108.04 Aligned_cols=178 Identities=17% Similarity=0.160 Sum_probs=106.2
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH-
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI- 111 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~- 111 (987)
..+++|+|++|+||||+|+.+++.+... ....+++. ....+..++...+...+..... ..+.......+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RVVAAKLV-----NTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDF 114 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-CeEEeeee-----CCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHH
Confidence 3588999999999999999999886532 21223332 1123445666666655322211 1111122223322
Q ss_pred ---H-hcCCceEEEEeCCCChH--HHHHHhc---CCCCCCCCcEEEEEeCCccccccc----------CcCceEEcCCCC
Q 001979 112 ---K-LRHKRVLLVIDDVDEFD--QLQALAG---QRDWFGLGSRIIITTRDRHLLVRC----------DVEDTYMVEKLN 172 (987)
Q Consensus 112 ---~-L~~k~~LlVlDdv~~~~--~~~~l~~---~~~~~~~gs~IiiTtR~~~v~~~~----------~~~~~~~l~~L~ 172 (987)
. ..+++.+||+||++... .++.+.. ..........|++|.... ..... .....+++++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 2 25788999999998743 3444432 211112233455655432 11111 123468899999
Q ss_pred HHHHHHHHHHhhccCCC--CCChHHHHHHHHHHHhCCCchhHHHHhhhh
Q 001979 173 YNEALHLFSWKAFRKGH--PTDGYFELSHSMVNYADGLPLALEILGSFL 219 (987)
Q Consensus 173 ~~ea~~Lf~~~a~~~~~--~~~~~~~~~~~i~~~~~G~PLal~~l~~~L 219 (987)
.+|..+++...+..... ...-..+..+.|++.++|.|..+..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999999877643221 112234788999999999999999988775
No 35
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.99 E-value=5.3e-09 Score=110.87 Aligned_cols=170 Identities=21% Similarity=0.284 Sum_probs=105.8
Q ss_pred CCccccchhH---HHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHH
Q 001979 10 EKLVGMDYRL---EQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQ 86 (987)
Q Consensus 10 ~~~vGr~~~~---~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (987)
+++||.+.-+ .-|.+++.. +.+.-..+||++|+||||||+.++......|. ..--+ ..++.++. +
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~-~~sAv--------~~gvkdlr-~ 91 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFE-ALSAV--------TSGVKDLR-E 91 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceE-Eeccc--------cccHHHHH-H
Confidence 4555554433 223344433 44555668999999999999999998777776 11111 12333322 2
Q ss_pred HHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCC--hHHHHHHhcCCCCCCCCcEEEE--EeCCcccccc---
Q 001979 87 LVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDE--FDQLQALAGQRDWFGLGSRIII--TTRDRHLLVR--- 159 (987)
Q Consensus 87 ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii--TtR~~~v~~~--- 159 (987)
++.+ .-+.+..+++.+|++|.|.. ..|-+.+++.. ..|.-|+| ||.++...-.
T Consensus 92 i~e~-----------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 92 IIEE-----------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred HHHH-----------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHH
Confidence 2222 11234458999999999954 56677777664 56777776 6766643211
Q ss_pred cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCC-----hHHHHHHHHHHHhCCCchh
Q 001979 160 CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTD-----GYFELSHSMVNYADGLPLA 211 (987)
Q Consensus 160 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~-----~~~~~~~~i~~~~~G~PLa 211 (987)
.....++++++|+.+|-.+++.+-+-.....-. -..+....+++.++|---+
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 245579999999999999999884422222111 1234667788888886644
No 36
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.99 E-value=4.7e-09 Score=128.48 Aligned_cols=308 Identities=16% Similarity=0.209 Sum_probs=177.5
Q ss_pred CccccchhHHHHHHHhcCC-CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc---cCHHHHHHH
Q 001979 11 KLVGMDYRLEQIYLMLGTG-LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT---RGLVALQEQ 86 (987)
Q Consensus 11 ~~vGr~~~~~~l~~~L~~~-~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~---~~~~~l~~~ 86 (987)
.++||+.+++.|...+... .+...++.+.|.+|||||+++++|...+.+++. ..+- ......... ..+.+..++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~-~~i~-~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRG-YFIK-GKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccce-eeeH-hhcccccCCCchHHHHHHHHH
Confidence 4799999999999988753 345689999999999999999999997765522 1100 000000000 112222233
Q ss_pred HHHHHhcCCCccc----------------------------------------ccchhh-----HHHHHHHh-cCCceEE
Q 001979 87 LVSEILLDKNVKI----------------------------------------WDVHKG-----CHMIRIKL-RHKRVLL 120 (987)
Q Consensus 87 ll~~l~~~~~~~~----------------------------------------~~~~~~-----~~~l~~~L-~~k~~Ll 120 (987)
++.+++...+... ...+.. ...+.... +.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 3322211111000 000000 11222223 3569999
Q ss_pred EEeCCCChH-----HHHHHhcCCCC-CCCCcEE--EEEeCCc--ccccccCcCceEEcCCCCHHHHHHHHHHhhccCCCC
Q 001979 121 VIDDVDEFD-----QLQALAGQRDW-FGLGSRI--IITTRDR--HLLVRCDVEDTYMVEKLNYNEALHLFSWKAFRKGHP 190 (987)
Q Consensus 121 VlDdv~~~~-----~~~~l~~~~~~-~~~gs~I--iiTtR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 190 (987)
|+||+...+ -++.++....- .-....| +.|.+.. .+.........+.+.||+..+...+...........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 999994322 13333333210 0001122 2233322 111112234689999999999999998776332222
Q ss_pred CChHHHHHHHHHHHhCCCchhHHHHhhhhcCC-------CHHHHHHHHHhhhcCCC-chHHHHHHHhHhCccHHHHHHHh
Q 001979 191 TDGYFELSHSMVNYADGLPLALEILGSFLFAR-------SKAEWKDALDRLKYVPD-QKIFEILKISYDGLQETEKKIFL 262 (987)
Q Consensus 191 ~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~l~~sy~~L~~~~k~~fl 262 (987)
.....+.|+++.+|+|+.+..+-..+... +...|..-...+...+. +.+.+.+....+.||...|+++.
T Consensus 239 ---~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 239 ---PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred ---cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 23678999999999999999998888753 33445544444433321 23556788899999999999999
Q ss_pred heeeccCCCCHHHHHHHHHhCCCCccccchhhhcccceEEe---------CC---eEEecHHHHHHHHHHHhh
Q 001979 263 DIACFFKGKDKDQVRELLDSCDFYPEIGISVLIDKCIITLS---------NN---ILCMHDLIQDMGREIVRQ 323 (987)
Q Consensus 263 ~la~f~~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~Li~~~---------~~---~~~mHdll~~~~~~i~~~ 323 (987)
..||+...++.+.+..++..........+......++|... .. +-..|+.+|+.+.....+
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~ 388 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPE 388 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCch
Confidence 99999999998888887764332222222222333444331 11 224677777776665443
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.89 E-value=5.1e-11 Score=129.95 Aligned_cols=188 Identities=22% Similarity=0.384 Sum_probs=98.6
Q ss_pred eEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCc
Q 001979 402 LLKWHGYPLRSLPSNF-QPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLS 480 (987)
Q Consensus 402 ~L~~~~~~l~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~ 480 (987)
..+++.|.+..+|..+ .+..|..+.+..|.+..+|..++++..|.+|||+.|++...+..++.++ |+.|.+++| .++
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~ 156 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLT 156 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccc
Confidence 3455555555555555 3444555555555555555555555566666665555544444444333 455555442 334
Q ss_pred cccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcc
Q 001979 481 FVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVS 560 (987)
Q Consensus 481 ~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~ 560 (987)
.+|..++.+.+|..|+.+.| .+.++|+.+ +.+.+|+.|.+..|++..+|.
T Consensus 157 ~lp~~ig~~~tl~~ld~s~n-ei~slpsql--------~~l~slr~l~vrRn~l~~lp~--------------------- 206 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKN-EIQSLPSQL--------GYLTSLRDLNVRRNHLEDLPE--------------------- 206 (722)
T ss_pred cCCcccccchhHHHhhhhhh-hhhhchHHh--------hhHHHHHHHHHhhhhhhhCCH---------------------
Confidence 45555555555555555544 334444433 444444444444444444444
Q ss_pred cCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccC---CCCCcEEEccCC
Q 001979 561 LPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVL---LENLKELSFHGC 626 (987)
Q Consensus 561 lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~---l~~L~~L~L~~~ 626 (987)
.++.| .|..|+++. +++..+|-.|.+|..|++|-|.+|.++..|..|.- .-=-++|+...|
T Consensus 207 ---El~~L-pLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 207 ---ELCSL-PLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ---HHhCC-ceeeeeccc-CceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 44433 255566554 34556666666677777777777776666655422 222356666666
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.89 E-value=1.8e-10 Score=125.70 Aligned_cols=190 Identities=29% Similarity=0.426 Sum_probs=135.5
Q ss_pred cEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCC
Q 001979 493 KVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLK 572 (987)
Q Consensus 493 ~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 572 (987)
...+|+.| ....+|... ..+..|+.+.+..|.+..+|..+.++..|++|+|+.|. +..+|..++.|+ |+
T Consensus 78 ~~aDlsrN-R~~elp~~~--------~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 78 VFADLSRN-RFSELPEEA--------CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LK 146 (722)
T ss_pred hhhhcccc-ccccCchHH--------HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ce
Confidence 44555554 455566544 55667777788888888888888888888888888754 456777777775 88
Q ss_pred EEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCcc
Q 001979 573 VLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGF 652 (987)
Q Consensus 573 ~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 652 (987)
.|.+++| +++.+|+.++.+..|..|+.+.|.+..+|+.++.+.+|+.|.+..|....
T Consensus 147 vli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~---------------------- 203 (722)
T KOG0532|consen 147 VLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED---------------------- 203 (722)
T ss_pred eEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh----------------------
Confidence 8888874 67889999998899999999999999999988888888888887665321
Q ss_pred ccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccchhhh---ccCCCcEEecCCC
Q 001979 653 FIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASIN---QLSRLETLNIDYC 719 (987)
Q Consensus 653 ~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~---~l~~L~~L~L~~c 719 (987)
.++.+..+ .|..||+|.|++.. +|..+..|..|++|-|.+|.+.+-|..|+ ...--++|++.-|
T Consensus 204 lp~El~~L-pLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 204 LPEELCSL-PLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCHHHhCC-ceeeeecccCceee--cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 12223322 46677777777754 77777777777777777777777666553 2334456666655
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.89 E-value=3.2e-08 Score=103.10 Aligned_cols=177 Identities=13% Similarity=0.133 Sum_probs=103.9
Q ss_pred CCCCCCccccchhHHHHHHHhcC-CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGT-GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQ 84 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~-~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 84 (987)
+..-++|||-+.. ..+..+... .....+.+.|||++|+|||+||+++++.+..+.. .+.|+.. ... ....
T Consensus 12 ~~~fd~f~~~~~~-~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~y~~~----~~~---~~~~ 82 (229)
T PRK06893 12 DETLDNFYADNNL-LLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQR-TAIYIPL----SKS---QYFS 82 (229)
T ss_pred cccccccccCChH-HHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CeEEeeH----HHh---hhhh
Confidence 3445677754432 222222211 1123357889999999999999999998766655 6677762 110 0000
Q ss_pred HHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh---HHHH-HHhcCCCCC-CCCcEEEEEeCCc-----
Q 001979 85 EQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF---DQLQ-ALAGQRDWF-GLGSRIIITTRDR----- 154 (987)
Q Consensus 85 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~-~l~~~~~~~-~~gs~IiiTtR~~----- 154 (987)
. .+.+.++ +.-+|||||++.. .+|+ .+...++.. ..|..+||+|.+.
T Consensus 83 ~----------------------~~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l 139 (229)
T PRK06893 83 P----------------------AVLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHAL 139 (229)
T ss_pred H----------------------HHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHc
Confidence 0 1111122 2348999999763 3333 222222211 2466665554443
Q ss_pred -----ccccccCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 155 -----HLLVRCDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 155 -----~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
.+...++....+++++++.++.++++.+.++......+ .++.+.|++++.|..-++..+-
T Consensus 140 ~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~--~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 140 SIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELS--DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred cccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhccCCHHHHHHHH
Confidence 23333344568999999999999999999875543322 3678888888888776655443
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.6e-10 Score=119.13 Aligned_cols=208 Identities=22% Similarity=0.233 Sum_probs=110.5
Q ss_pred CCCCcccEEeccCCcCCcccc--CccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCcc
Q 001979 463 TGVPKLERLVLDGCTNLSFVH--PSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPS 540 (987)
Q Consensus 463 ~~l~~L~~L~L~~~~~l~~~~--~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~ 540 (987)
+++.+|++..|.+|. ....+ .....+++++.|||+.|- +...- ..+.+...+++|+.|+++.|.+....++
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~-----~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNL-FHNWF-----PVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhh-HHhHH-----HHHHHHHhcccchhcccccccccCCccc
Confidence 445666666666643 22222 234456666666666641 11100 1123344555555555555544422221
Q ss_pred ccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCc-ccccccCCCCCcEeeCCCCC-CCCCCccccCCCCC
Q 001979 541 IKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEE-VPENLGHIASLENLDLGGTA-IRRPPSTIVLLENL 618 (987)
Q Consensus 541 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~L~~~~-i~~~p~~i~~l~~L 618 (987)
.. -..+++|+.|.++.|..... +...+..+++|+.|+|.+|. +..-..+..-+..|
T Consensus 191 ~~----------------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 191 NT----------------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred cc----------------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 00 11355666666666655422 23334456667777776663 22212233345566
Q ss_pred cEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccc-----cCCCCCCCEEeC
Q 001979 619 KELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPND-----LGSLSALTNLTL 693 (987)
Q Consensus 619 ~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~-----l~~l~~L~~L~L 693 (987)
+.|+|++|..... ........++.|..|+++.|.+.+-..|+. ...+++|+.|++
T Consensus 249 ~~LdLs~N~li~~--------------------~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i 308 (505)
T KOG3207|consen 249 QELDLSNNNLIDF--------------------DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNI 308 (505)
T ss_pred hhccccCCccccc--------------------ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeec
Confidence 6777766653321 111335566777777777777766555554 456778888888
Q ss_pred CCCCCcccch--hhhccCCCcEEecCCC
Q 001979 694 SRNNFFSLPA--SINQLSRLETLNIDYC 719 (987)
Q Consensus 694 ~~n~l~~lp~--~i~~l~~L~~L~L~~c 719 (987)
..|++..+++ .+..+++|+.|.+..+
T Consensus 309 ~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 309 SENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccCccccccccchhhccchhhhhhcccc
Confidence 8887765552 4556667777766543
No 41
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.86 E-value=7.5e-08 Score=111.95 Aligned_cols=245 Identities=14% Similarity=0.081 Sum_probs=131.5
Q ss_pred CCCCCccccchhHHHHHHHhcC---CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-----CC-cceEEEEehHhhhhc
Q 001979 7 SASEKLVGMDYRLEQIYLMLGT---GLDEARILGICGMGGIGKTTLARFVFDNISYQ-----FD-DGSSFLANVREVSQT 77 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----f~-~~~~~~~~~~~~~~~ 77 (987)
..|+.++||+.++++|...|.. +.....++.|+|++|.|||+.++.|.+++... .. ..++++.+ ...
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC----m~L 827 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING----MNV 827 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC----Ccc
Confidence 4578999999999999988854 22333677899999999999999999876432 11 23456652 222
Q ss_pred cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhc---CCceEEEEeCCCChH--H---HHHHhcCCCCCCCCcEEEE
Q 001979 78 RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLR---HKRVLLVIDDVDEFD--Q---LQALAGQRDWFGLGSRIII 149 (987)
Q Consensus 78 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~---~k~~LlVlDdv~~~~--~---~~~l~~~~~~~~~gs~Iii 149 (987)
.....+...+..++............+....+.+.+. +...+||||+|+... + +-.+..... ..+++|+|
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiL 905 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVL 905 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEE
Confidence 3445566666666543332222222333344444432 234699999997643 1 222222111 24555544
Q ss_pred --EeCCccc--------ccccCcCceEEcCCCCHHHHHHHHHHhhccCC-CCCC-hHHHHHHHHHHHhCCCchhHHHHhh
Q 001979 150 --TTRDRHL--------LVRCDVEDTYMVEKLNYNEALHLFSWKAFRKG-HPTD-GYFELSHSMVNYADGLPLALEILGS 217 (987)
Q Consensus 150 --TtR~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~-~~~~~~~~i~~~~~G~PLal~~l~~ 217 (987)
+|.+-.. ...++ ...+..++++.+|..+++..++-... ...+ ..+-+|+.++...|-.-.||.++-.
T Consensus 906 IGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 3332211 11122 22466799999999999999885321 1122 2222333333333334455554433
Q ss_pred hhcC--C---CHHHHHHHHHhhhcCCCchHHHHHHHhHhCccHHHHHHHhhee
Q 001979 218 FLFA--R---SKAEWKDALDRLKYVPDQKIFEILKISYDGLQETEKKIFLDIA 265 (987)
Q Consensus 218 ~L~~--~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la 265 (987)
+... . ..+.-+.+...+.. ..+.-....||.+.|-+++.++
T Consensus 985 AgEikegskVT~eHVrkAleeiE~-------srI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQLFD-------SPLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHHHh-------hhHHHHHHcCCHHHHHHHHHHH
Confidence 3321 1 22333333333221 1123334678888876665444
No 42
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.79 E-value=3.6e-07 Score=104.17 Aligned_cols=178 Identities=22% Similarity=0.266 Sum_probs=109.0
Q ss_pred CCCCCccccchhHHH---HHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHH
Q 001979 7 SASEKLVGMDYRLEQ---IYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 83 (987)
...+++||.+..+.. +.+++.. +....+.|+|++|+||||+|+.+++.....|. .+... ..+...+
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~----~l~a~-----~~~~~~i 77 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFE----ALSAV-----TSGVKDL 77 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE----EEecc-----cccHHHH
Confidence 344679999888766 7777754 34567889999999999999999997654443 12210 0111111
Q ss_pred HHHHHHHHhcCCCcccccchhhHHHHHH-HhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEE--eCCcc--c
Q 001979 84 QEQLVSEILLDKNVKIWDVHKGCHMIRI-KLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIIT--TRDRH--L 156 (987)
Q Consensus 84 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiT--tR~~~--v 156 (987)
++++.. ... ...+++.+|++|+++.. .+.+.+...+. .|..++|. |.+.. +
T Consensus 78 -r~ii~~------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l 135 (413)
T PRK13342 78 -REVIEE------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEV 135 (413)
T ss_pred -HHHHHH------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhc
Confidence 122211 111 12457889999999864 45566655443 35555553 33321 1
Q ss_pred ccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCC-ChHHHHHHHHHHHhCCCchhHHHHhh
Q 001979 157 LVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPT-DGYFELSHSMVNYADGLPLALEILGS 217 (987)
Q Consensus 157 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~G~PLal~~l~~ 217 (987)
... ......+++++++.++..+++.+.+....... .-..+..+.+++.++|.+..+..+..
T Consensus 136 ~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 136 NPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred cHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 111 12336899999999999999987653211111 22246678899999999977654443
No 43
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.78 E-value=6.6e-09 Score=111.14 Aligned_cols=279 Identities=22% Similarity=0.256 Sum_probs=178.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI 111 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 111 (987)
..|.|.++|.|||||||++-.+.. ++..|.+.+++++ ...+.+ ...+.-.+...+.. ...+-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vd-l~pitD---~~~v~~~~ag~~gl----~~~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVD-LAPITD---PALVFPTLAGALGL----HVQPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhhcccceeeee-ccccCc---hhHhHHHHHhhccc----ccccchHHHHHHHH
Confidence 458999999999999999999999 8889986666665 222222 22222222222111 11111234446677
Q ss_pred HhcCCceEEEEeCCCChH-HHHHHhcCCCCCCCCcEEEEEeCCcccccccCcCceEEcCCCCHH-HHHHHHHHhhccCCC
Q 001979 112 KLRHKRVLLVIDDVDEFD-QLQALAGQRDWFGLGSRIIITTRDRHLLVRCDVEDTYMVEKLNYN-EALHLFSWKAFRKGH 189 (987)
Q Consensus 112 ~L~~k~~LlVlDdv~~~~-~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~~ 189 (987)
+..+++.++|+||..... +-..+...+....+.-+|+.|+|+.. ....+..+.++.|+.. ++.++|...+.....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~---l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAI---LVAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhh---cccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 788999999999986643 33333333333356778899999752 2345667888888876 799999887743322
Q ss_pred C---CChHHHHHHHHHHHhCCCchhHHHHhhhhcCCCHHHHHHHHH----hhhc------CCCchHHHHHHHhHhCccHH
Q 001979 190 P---TDGYFELSHSMVNYADGLPLALEILGSFLFARSKAEWKDALD----RLKY------VPDQKIFEILKISYDGLQET 256 (987)
Q Consensus 190 ~---~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~~~~~w~~~l~----~l~~------~~~~~i~~~l~~sy~~L~~~ 256 (987)
. .........+|.+..+|.|++|...++..+....++-..-++ .+.. ..++.....+.+||.-|..-
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 1 333456788999999999999999999988765544333332 2222 12355678899999999999
Q ss_pred HHHHHhheeeccCCCCHHHHHHHHHhCCC-----CccccchhhhcccceEEeC----CeEEecHHHHHHHHHHHh
Q 001979 257 EKKIFLDIACFFKGKDKDQVRELLDSCDF-----YPEIGISVLIDKCIITLSN----NILCMHDLIQDMGREIVR 322 (987)
Q Consensus 257 ~k~~fl~la~f~~~~~~~~l~~~~~~~~~-----~~~~~~~~L~~~~Li~~~~----~~~~mHdll~~~~~~i~~ 322 (987)
++-.|-.++.|..+++.+.....-....+ .....+..+++++++...+ -.++.-+-.+.|+-+...
T Consensus 241 e~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 241 ERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH 315 (414)
T ss_pred HHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888877633222211111 1223356777888776541 133444444555544443
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=2.2e-09 Score=108.06 Aligned_cols=170 Identities=24% Similarity=0.293 Sum_probs=108.1
Q ss_pred CCCCCcEEEecCcccCC--CCCcCCcccceEEecCCCCCCCCCCC-------------------------CCCCceEEEc
Q 001979 375 RMKNLRLLKIRDVCLRH--GIEYLPDELRLLKWHGYPLRSLPSNF-------------------------QPERLFKLNI 427 (987)
Q Consensus 375 ~~~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~~~~~~l~~lp~~~-------------------------~~~~L~~L~l 427 (987)
-+++|+.+.++.+.... ++..+-+.|..++.+...+...|... ..+.|.+++|
T Consensus 212 ~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL 291 (490)
T KOG1259|consen 212 AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDL 291 (490)
T ss_pred HhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence 34667777777654332 44445567777777666544333211 2456788888
Q ss_pred CCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCC
Q 001979 428 CYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFP 507 (987)
Q Consensus 428 ~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp 507 (987)
++|.|+++.+.++-++.++.|++|+|.+...-. +..+++|.+|||++|.... +-..-..+-+.++|+|++| .+.
T Consensus 292 S~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N-~iE--- 365 (490)
T KOG1259|consen 292 SGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQN-KIE--- 365 (490)
T ss_pred cccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhh-hHh---
Confidence 888888888888888888888888887654433 7778888888888865322 2122223445667777775 222
Q ss_pred chhhhhhHHHhhhccccceeecCCcCCcccC--ccccCCCCCCEEeccCCC
Q 001979 508 AEIEWASLEIVQNAKRLLQLHLDQTSIEEIP--PSIKFLSRLTVLTLRDCK 556 (987)
Q Consensus 508 ~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~ 556 (987)
.+..++++-+|..|++++|+|+++. .+|+++|.|++|.|.+|+
T Consensus 366 ------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 366 ------TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ------hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 2334567777777788777777554 246666666666665554
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.77 E-value=9.8e-10 Score=113.76 Aligned_cols=239 Identities=20% Similarity=0.239 Sum_probs=144.5
Q ss_pred CCCcccEEeccCCcCCcc----ccCccccCCCCcEEeCcCCC---CCccCCchhhhhhHHHhhhccccceeecCCcCCc-
Q 001979 464 GVPKLERLVLDGCTNLSF----VHPSIGLLKRLKVLNMKECI---RIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIE- 535 (987)
Q Consensus 464 ~l~~L~~L~L~~~~~l~~----~~~~i~~l~~L~~L~L~~c~---~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~- 535 (987)
.+..+++|+|+||+.-.. +...+.+.+.|+..++++-- ....+|..+.+.+ ..+..+++|++|+|++|.+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~-~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLS-KALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHH-HHHhcCCceeEeeccccccCc
Confidence 344455555555544332 22334444555555555420 0111222221111 22334446777777776654
Q ss_pred ----ccCccccCCCCCCEEeccCCCCCcc-------------cCccCCCCCCCCEEEecCCCCCCc----ccccccCCCC
Q 001979 536 ----EIPPSIKFLSRLTVLTLRDCKKLVS-------------LPSSISDLRSLKVLNLNGCSKLEE----VPENLGHIAS 594 (987)
Q Consensus 536 ----~lp~~i~~l~~L~~L~L~~~~~l~~-------------lp~~l~~l~~L~~L~l~~c~~l~~----lp~~l~~l~~ 594 (987)
.+-.-+..+..|++|.|.+|..... ...-+.+-+.|+++...+|..-.. +...+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 1222345567777777777653211 111234567899998888654322 3345677789
Q ss_pred CcEeeCCCCCCCCC-----CccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecC
Q 001979 595 LENLDLGGTAIRRP-----PSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLG 669 (987)
Q Consensus 595 L~~L~L~~~~i~~~-----p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls 669 (987)
|+.+.+..|.|..- ...+.++++|+.|+|.+|........ .....++.+++|+.|+++
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~-----------------~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV-----------------ALAKALSSWPHLRELNLG 249 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH-----------------HHHHHhcccchheeeccc
Confidence 99999999887632 34568899999999999874422100 111346778899999999
Q ss_pred CCCCCCCCCcc---c-cCCCCCCCEEeCCCCCCc-----ccchhhhccCCCcEEecCCCc
Q 001979 670 DCNLQEGAIPN---D-LGSLSALTNLTLSRNNFF-----SLPASINQLSRLETLNIDYCN 720 (987)
Q Consensus 670 ~~~l~~~~lp~---~-l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 720 (987)
+|.+...+.-. . -...|+|+.|.+.+|.++ .+..++...+.|+.|+|++|.
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 99887543322 1 234789999999999887 345566778999999999976
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.7e-09 Score=114.91 Aligned_cols=216 Identities=19% Similarity=0.178 Sum_probs=135.5
Q ss_pred ccCCCCCCCEEecCCCCCCCCCC--CCCCCCcccEEeccCCcCC--ccccCccccCCCCcEEeCcCCCCCccCCchhhhh
Q 001979 438 GVQNMRHLKFIKLSHSVHLTKTP--DFTGVPKLERLVLDGCTNL--SFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWA 513 (987)
Q Consensus 438 ~~~~l~~L~~L~Ls~~~~~~~~~--~~~~l~~L~~L~L~~~~~l--~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~ 513 (987)
.-+++.+|+.+.|.++....... ....+++++.|||+.|-.. ..+..-...+++|+.|+|+.|...--..+..
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~--- 192 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT--- 192 (505)
T ss_pred HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc---
Confidence 34678999999999987654432 4678999999999996432 2444556789999999999985433322222
Q ss_pred hHHHhhhccccceeecCCcCCc--ccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCccc--ccc
Q 001979 514 SLEIVQNAKRLLQLHLDQTSIE--EIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVP--ENL 589 (987)
Q Consensus 514 ~l~~~~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp--~~l 589 (987)
-..+++|+.|.++.|++. .+-..+..+|+|+.|+|..|.....-.....-+..|+.|+|++|.... ++ ...
T Consensus 193 ----~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~ 267 (505)
T KOG3207|consen 193 ----TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKV 267 (505)
T ss_pred ----hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-ccccccc
Confidence 146778888888888887 333345567777777777765332222223345556666666654432 22 234
Q ss_pred cCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecC
Q 001979 590 GHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLG 669 (987)
Q Consensus 590 ~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls 669 (987)
+.++.|+.|.++.|.+.++.. ... ....-...+++|+.|+++
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~-----------------------~d~---------------~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAE-----------------------PDV---------------ESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred ccccchhhhhccccCcchhcC-----------------------CCc---------------cchhhhcccccceeeecc
Confidence 555666666665555543310 000 000113456788888888
Q ss_pred CCCCCCCCCccccCCCCCCCEEeCCCCCCc
Q 001979 670 DCNLQEGAIPNDLGSLSALTNLTLSRNNFF 699 (987)
Q Consensus 670 ~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~ 699 (987)
.|++.+......+..+++|+.|.+..|.++
T Consensus 310 ~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 310 ENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cCccccccccchhhccchhhhhhccccccc
Confidence 888866444445667778888887777665
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=1.3e-08 Score=116.48 Aligned_cols=192 Identities=27% Similarity=0.411 Sum_probs=121.7
Q ss_pred EEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCC-cccEEeccCCcCCccccCccccCCCCcEEeCcCCCCC
Q 001979 425 LNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVP-KLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRI 503 (987)
Q Consensus 425 L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~-~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l 503 (987)
+.+..+.+..-...+..+..++.|++.++.+....+....+. +|+.|++++| .+..+|..++.+++|+.|+++.| .+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l 175 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DL 175 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc-hh
Confidence 444444443333333444556666666665554444444443 6666666663 33444455667777777777776 45
Q ss_pred ccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCC
Q 001979 504 KSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLE 583 (987)
Q Consensus 504 ~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 583 (987)
..+|... +.+++|+.|++++|.+..+|..+.....|+.|.+++|. ....+..+.++.++..|.+.++ .+.
T Consensus 176 ~~l~~~~--------~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n-~~~ 245 (394)
T COG4886 176 SDLPKLL--------SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNN-KLE 245 (394)
T ss_pred hhhhhhh--------hhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCc-eee
Confidence 5555432 36677777777777777777766666777788777764 2334444666777777775554 334
Q ss_pred cccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCC
Q 001979 584 EVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQ 629 (987)
Q Consensus 584 ~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~ 629 (987)
.++..++.+++|+.|++++|.+..++. +..+.+|+.|+++++...
T Consensus 246 ~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 246 DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred eccchhccccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence 446777778888888888888887777 778888888888877643
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=2e-09 Score=108.41 Aligned_cols=83 Identities=27% Similarity=0.334 Sum_probs=47.0
Q ss_pred hhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEe
Q 001979 519 QNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENL 598 (987)
Q Consensus 519 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 598 (987)
...+.|++|+|++|.|+.+..+..-+|+++.|++++|..... ..+..+++|+.|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--------------------------~nLa~L~~L~~L 334 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--------------------------QNLAELPQLQLL 334 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--------------------------hhhhhcccceEe
Confidence 344566777777777776666665566666666655433221 124445556666
Q ss_pred eCCCCCCCCCCccccCCCCCcEEEccCCC
Q 001979 599 DLGGTAIRRPPSTIVLLENLKELSFHGCK 627 (987)
Q Consensus 599 ~L~~~~i~~~p~~i~~l~~L~~L~L~~~~ 627 (987)
||++|.++++-.+-..+.+++.|.|.+|.
T Consensus 335 DLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 335 DLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred ecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 66666555554444455556666665554
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.72 E-value=2e-08 Score=114.92 Aligned_cols=195 Identities=27% Similarity=0.338 Sum_probs=140.3
Q ss_pred EEEecCcccCCCCCcCC--cccceEEecCCCCCCCCCCCCCC--CceEEEcCCCCccccccccCCCCCCCEEecCCCCCC
Q 001979 381 LLKIRDVCLRHGIEYLP--DELRLLKWHGYPLRSLPSNFQPE--RLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHL 456 (987)
Q Consensus 381 ~L~l~~~~l~~~~~~l~--~~Lr~L~~~~~~l~~lp~~~~~~--~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~ 456 (987)
.+....+.....+..+. +.+..|++.++.+.++|...... +|++|++++|.+.+++..+..+++|+.|++++|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 45565555533333322 36888888888888888877554 788999999988888888888888999999888876
Q ss_pred CCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcc
Q 001979 457 TKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEE 536 (987)
Q Consensus 457 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~ 536 (987)
...+.....++|+.|++++| .+..+|..++.+..|++|.+++|. ....+.. +.++.++..|.+..+.+..
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~--------~~~~~~l~~l~l~~n~~~~ 246 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSS--------LSNLKNLSGLELSNNKLED 246 (394)
T ss_pred hhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchh--------hhhcccccccccCCceeee
Confidence 66555558888888888885 456666666677778888888874 2223332 3677778888888888888
Q ss_pred cCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccc
Q 001979 537 IPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPE 587 (987)
Q Consensus 537 lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~ 587 (987)
++..++.+++|+.|++++|... .++. +..+.+|+.|+++++......|.
T Consensus 247 ~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 247 LPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 7888888888888888876543 3333 77788888888888766554443
No 50
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.69 E-value=2.7e-07 Score=96.66 Aligned_cols=174 Identities=18% Similarity=0.175 Sum_probs=104.6
Q ss_pred CCCccc--cchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHH
Q 001979 9 SEKLVG--MDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQ 86 (987)
Q Consensus 9 ~~~~vG--r~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (987)
.++|++ .+..++++.+++.. ...+.|.|+|++|+|||++|+.++++...... ...++++ ...... ...
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~-~~~~i~~-~~~~~~------~~~ 83 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGK-SAIYLPL-AELAQA------DPE 83 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-cEEEEeH-HHHHHh------HHH
Confidence 456663 44567777777643 34568889999999999999999997655444 4556651 111110 001
Q ss_pred HHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH---H-HHHHhcCCCC-CCCCcEEEEEeCCcccc----
Q 001979 87 LVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD---Q-LQALAGQRDW-FGLGSRIIITTRDRHLL---- 157 (987)
Q Consensus 87 ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IiiTtR~~~v~---- 157 (987)
++ ..+.. .-+|||||++... . .+.+...+.. ...+.++|+||+.....
T Consensus 84 ~~----------------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 84 VL----------------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLR 140 (226)
T ss_pred HH----------------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcc
Confidence 11 11222 2389999997542 1 2333332211 12345888988854211
Q ss_pred -----cccCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhh
Q 001979 158 -----VRCDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGS 217 (987)
Q Consensus 158 -----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~ 217 (987)
..+.....+++++++.+|...++...+-....+ --.+..+.+++.+.|+|..+..+..
T Consensus 141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 111224579999999999999998765322222 1235678888889999977766543
No 51
>PLN03025 replication factor C subunit; Provisional
Probab=98.66 E-value=1.8e-06 Score=95.05 Aligned_cols=184 Identities=16% Similarity=0.175 Sum_probs=110.8
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhh-cCCCcceEEEEehHhhhhccCHHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNIS-YQFDDGSSFLANVREVSQTRGLVALQ 84 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~ 84 (987)
|..-++++|.+..++.|.+++..+ ..+.+.++|++|+||||+|+.+++.+. ..|...+.-+. .+...+... .
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln----~sd~~~~~~-v 81 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN----ASDDRGIDV-V 81 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec----ccccccHHH-H
Confidence 344578899999999998887643 344577999999999999999999863 33431222222 222222222 2
Q ss_pred HHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-cccccc-
Q 001979 85 EQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDR-HLLVRC- 160 (987)
Q Consensus 85 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~-~v~~~~- 160 (987)
++.+....... ... -.++.-++|||+++.. ...+++........+.+++|+++... .+....
T Consensus 82 r~~i~~~~~~~-~~~-------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~ 147 (319)
T PLN03025 82 RNKIKMFAQKK-VTL-------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQ 147 (319)
T ss_pred HHHHHHHHhcc-ccC-------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHH
Confidence 22222211000 000 0134668999999874 23344444443345667887777543 222211
Q ss_pred CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhH
Q 001979 161 DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLAL 212 (987)
Q Consensus 161 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 212 (987)
.....+++++++.++..+.+...+-.....-+ .+....|++.++|..-.+
T Consensus 148 SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 148 SRCAIVRFSRLSDQEILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred HhhhcccCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 23357999999999999998877744332222 356788999999876443
No 52
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=2.4e-06 Score=101.51 Aligned_cols=187 Identities=17% Similarity=0.133 Sum_probs=115.1
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-C-CcceEEEEe-hHh----------
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ-F-DDGSSFLAN-VRE---------- 73 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f-~~~~~~~~~-~~~---------- 73 (987)
...+++||.+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+-.. . ....|.... ...
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 34578999999999999988653 223556899999999999999999976432 1 100111100 000
Q ss_pred ---hhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHH-HHhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEE
Q 001979 74 ---VSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIR-IKLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRI 147 (987)
Q Consensus 74 ---~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~I 147 (987)
.....++.. .+++... +. .-..+++-++|||+++.. ...++|+..+.......++
T Consensus 92 EidAas~~kVDd-IReLie~------------------v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 92 EVDAASRTKVDD-TRELLDN------------------VQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EeccccccCHHH-HHHHHHH------------------HHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 000011111 1122111 11 112366779999999764 5677777766555567777
Q ss_pred EEEeCCcc-cccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHH
Q 001979 148 IITTRDRH-LLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEIL 215 (987)
Q Consensus 148 iiTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 215 (987)
|++|.+.+ +... ......|++.+++.++..+.+.+.+-.... ....+.++.|++.++|.|--+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 77666543 3322 234578999999999999999876533221 122356888999999988644433
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.64 E-value=3.2e-09 Score=109.99 Aligned_cols=188 Identities=24% Similarity=0.318 Sum_probs=135.0
Q ss_pred cccCCCCCCCEEecCCCCCCCCCCC-----CCCCCcccEEeccCCcCCcc-------------ccCccccCCCCcEEeCc
Q 001979 437 QGVQNMRHLKFIKLSHSVHLTKTPD-----FTGVPKLERLVLDGCTNLSF-------------VHPSIGLLKRLKVLNMK 498 (987)
Q Consensus 437 ~~~~~l~~L~~L~Ls~~~~~~~~~~-----~~~l~~L~~L~L~~~~~l~~-------------~~~~i~~l~~L~~L~L~ 498 (987)
+++..+++|++||||+|-+....+. +..+.+|++|.|.+|..-.. ....++.-++|+++...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 4556677888888888877655442 56788899999988864321 12235566789999888
Q ss_pred CCCCCccCCchhhhhhHHHhhhccccceeecCCcCCc-----ccCccccCCCCCCEEeccCCCCCcc----cCccCCCCC
Q 001979 499 ECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIE-----EIPPSIKFLSRLTVLTLRDCKKLVS----LPSSISDLR 569 (987)
Q Consensus 499 ~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~l~~l~ 569 (987)
.| .+...+... .-..+...+.|+.+.+..|.|. .+...+.++++|+.|||.+|..... +...++.++
T Consensus 166 rN-rlen~ga~~---~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 166 RN-RLENGGATA---LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred cc-ccccccHHH---HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 76 454444311 1234567789999999999886 3445688999999999999987643 444567788
Q ss_pred CCCEEEecCCCCCCccc----ccc-cCCCCCcEeeCCCCCCCCC-----CccccCCCCCcEEEccCCCC
Q 001979 570 SLKVLNLNGCSKLEEVP----ENL-GHIASLENLDLGGTAIRRP-----PSTIVLLENLKELSFHGCKG 628 (987)
Q Consensus 570 ~L~~L~l~~c~~l~~lp----~~l-~~l~~L~~L~L~~~~i~~~-----p~~i~~l~~L~~L~L~~~~~ 628 (987)
+|+.|++++|..-..-. +.+ ...++|+.|.+.+|.|+.- ...+...+.|..|+|++|..
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99999999997654422 222 3478999999999988732 33455688999999999985
No 54
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=2.8e-08 Score=97.15 Aligned_cols=117 Identities=19% Similarity=0.289 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCCceEEEcCCCCccccccccC-CCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCcc-c
Q 001979 410 LRSLPSNFQPERLFKLNICYSLVEQLWQGVQ-NMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSI-G 487 (987)
Q Consensus 410 l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~-~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i-~ 487 (987)
++..|.-.++.++++|+|.++.|+.+. .+. .+.+|+.|+|++|.+.. ++.+..+++|++|++++|... .+.+.+ .
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~ 85 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITK-LEGLPGLPRLKTLDLSNNRIS-SISEGLDK 85 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHH
T ss_pred ccccccccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcc-ccCccChhhhhhcccCCCCCC-ccccchHH
Confidence 444455456666777777777777663 343 46677777777776543 445666666666666665432 232222 2
Q ss_pred cCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcc
Q 001979 488 LLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEE 536 (987)
Q Consensus 488 ~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~ 536 (987)
.+++|++|++++| .+..+.. +..+..+++|+.|++.+|.+..
T Consensus 86 ~lp~L~~L~L~~N-~I~~l~~------l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 86 NLPNLQELYLSNN-KISDLNE------LEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp H-TT--EEE-TTS----SCCC------CGGGGG-TT--EEE-TT-GGGG
T ss_pred hCCcCCEEECcCC-cCCChHH------hHHHHcCCCcceeeccCCcccc
Confidence 4556666666554 2222211 1223445555555555555543
No 55
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.62 E-value=7.2e-07 Score=99.74 Aligned_cols=201 Identities=16% Similarity=0.138 Sum_probs=110.9
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-CCcceEEEEehHhhhhccCHHHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ-FDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
...++++|++..++++.+++..+ ..+.+.|+|++|+||||+|+++++.+... +....++++.. +.... ....+..
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~-~~~~~-~~~~~~~ 87 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA-DFFDQ-GKKYLVE 87 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh-hhhhc-chhhhhc
Confidence 33478999999999999988653 33467899999999999999999976433 22123444321 11000 0000000
Q ss_pred --HHHHHHhcCCCcccccchhhHHH-HHHHh-----cCCceEEEEeCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc-
Q 001979 86 --QLVSEILLDKNVKIWDVHKGCHM-IRIKL-----RHKRVLLVIDDVDEFD--QLQALAGQRDWFGLGSRIIITTRDR- 154 (987)
Q Consensus 86 --~ll~~l~~~~~~~~~~~~~~~~~-l~~~L-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTtR~~- 154 (987)
.....+........ ...+.... ++... ...+-+||+||++... ..+.+...+....+.+++|+||...
T Consensus 88 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 88 DPRFAHFLGTDKRIRS-SKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred Ccchhhhhhhhhhhcc-chHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 00000000000000 00111111 11111 1334589999997642 2334443333334567888877543
Q ss_pred cccccc-CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHH
Q 001979 155 HLLVRC-DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEI 214 (987)
Q Consensus 155 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 214 (987)
.+.... .....+++.+++.++..+++...+-..... -..+..+.++++++|.+-.+..
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 222221 234578899999999999998876433322 1246788899999988765543
No 56
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.62 E-value=3.6e-07 Score=102.60 Aligned_cols=173 Identities=17% Similarity=0.205 Sum_probs=101.9
Q ss_pred CCCccccchhHHHHHHHhcCC-----------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc
Q 001979 9 SEKLVGMDYRLEQIYLMLGTG-----------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT 77 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 77 (987)
.+++.|++..++++.+.+... -...+-|.|+|++|+|||++|++++++....|- ...
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~------~v~------ 188 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI------RVV------ 188 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEE------ecc------
Confidence 457899999999998876421 122456899999999999999999998754442 100
Q ss_pred cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH-HhcCCceEEEEeCCCChH----------------HHHHHhcCCCC
Q 001979 78 RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI-KLRHKRVLLVIDDVDEFD----------------QLQALAGQRDW 140 (987)
Q Consensus 78 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~ 140 (987)
...+....... .......+.+ .-...+.+|+|||++... .+..+...+..
T Consensus 189 --~~~l~~~~~g~-----------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 189 --GSELVRKYIGE-----------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred --hHHHHHHhhhH-----------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 00111111100 0011111111 123466899999986531 13333322221
Q ss_pred C--CCCcEEEEEeCCccccc-----ccCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc
Q 001979 141 F--GLGSRIIITTRDRHLLV-----RCDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 141 ~--~~gs~IiiTtR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 209 (987)
. ..+.+||.||....... ....+..++++..+.++..++|..++.+...+.+ .....+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 1 24677888887543222 1234568999999999999999988755443321 11456667777654
No 57
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.8e-06 Score=96.68 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=113.1
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC--cceEEEEehHhhhhccCHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFD--DGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l 83 (987)
|..-+++||.+.-++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+..... ...|-. ...
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~------------c~~ 78 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK------------CII 78 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC------------CHH
Confidence 344578999999999999988753 23466789999999999999999997642211 000000 000
Q ss_pred HHHHHHH----HhcCCCcccccchhhHHHHHHHh-----cCCceEEEEeCCCChH--HHHHHhcCCCCCCCCcEEEEEeC
Q 001979 84 QEQLVSE----ILLDKNVKIWDVHKGCHMIRIKL-----RHKRVLLVIDDVDEFD--QLQALAGQRDWFGLGSRIIITTR 152 (987)
Q Consensus 84 ~~~ll~~----l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTtR 152 (987)
..++... +..-........+ ....+.+.+ .+++-++|+|+++... .++++...+....+..++|++|.
T Consensus 79 c~~~~~~~~~d~~~~~~~~~~~v~-~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASRTKVE-EMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred HHHHhcCCCCceEEecccccCCHH-HHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 0000000 0000000000001 111121221 2355699999998754 46677766655556777777776
Q ss_pred Ccc-cccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHH
Q 001979 153 DRH-LLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALE 213 (987)
Q Consensus 153 ~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 213 (987)
+.. +... .+....+++++++.++..+.+...+......- ..+.++.|++.++|.|-.+.
T Consensus 158 ~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i--~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 158 DVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT--DEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred ChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 542 3222 23346899999999999998887664433221 23567889999999886443
No 58
>PRK04195 replication factor C large subunit; Provisional
Probab=98.61 E-value=1.6e-06 Score=101.07 Aligned_cols=215 Identities=17% Similarity=0.148 Sum_probs=125.5
Q ss_pred CCCCCCccccchhHHHHHHHhcCC--CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTG--LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 83 (987)
|...+++||.+..++++.+|+..- ....+.+.|+|++|+||||+|+++++++. ++ .+.++ .+...... .
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~--~ieln----asd~r~~~-~ 80 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE--VIELN----ASDQRTAD-V 80 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC--EEEEc----ccccccHH-H
Confidence 344578999999999999998642 12267899999999999999999999863 32 22232 22222211 2
Q ss_pred HHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH------HHHHHhcCCCCCCCCcEEEEEeCCcccc
Q 001979 84 QEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD------QLQALAGQRDWFGLGSRIIITTRDRHLL 157 (987)
Q Consensus 84 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~IiiTtR~~~v~ 157 (987)
..+++....... .....++-+||+|+++... .++++..... ..+..||+|+.+..-.
T Consensus 81 i~~~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~ 143 (482)
T PRK04195 81 IERVAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDP 143 (482)
T ss_pred HHHHHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCcccc
Confidence 222222211100 0011367799999997642 2455544333 2345577776554221
Q ss_pred c--c-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhhhcC-C---CHHHHHHH
Q 001979 158 V--R-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSFLFA-R---SKAEWKDA 230 (987)
Q Consensus 158 ~--~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~-~---~~~~w~~~ 230 (987)
. . ......+++++++.++....+...+.......+ .+....|++.++|..-.+......+.. . +.+..+.+
T Consensus 144 ~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~--~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~ 221 (482)
T PRK04195 144 SLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD--DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTL 221 (482)
T ss_pred chhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHh
Confidence 1 1 123467899999999999988877644333222 467889999999977665543333322 1 23333222
Q ss_pred HHhhhcCCCchHHHHHHHhHh
Q 001979 231 LDRLKYVPDQKIFEILKISYD 251 (987)
Q Consensus 231 l~~l~~~~~~~i~~~l~~sy~ 251 (987)
. .......+++++..-+.
T Consensus 222 ~---~~d~~~~if~~l~~i~~ 239 (482)
T PRK04195 222 G---RRDREESIFDALDAVFK 239 (482)
T ss_pred h---cCCCCCCHHHHHHHHHC
Confidence 2 13334556666665554
No 59
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=2.7e-06 Score=99.17 Aligned_cols=194 Identities=13% Similarity=0.109 Sum_probs=114.4
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC--CCcceEEEEehHhhhhccCHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ--FDDGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l 83 (987)
|...+++||.+.-++.|..++..+. -.+.+.++|+.|+||||+|+.+.+.+-.. ..... .+....
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~P------------CG~C~s 78 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQP------------CGVCRA 78 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCC------------CcccHH
Confidence 3445789999999999999987542 23566799999999999999999875321 11000 000000
Q ss_pred HHHHHHH----HhcCCCcccccchhhHHHHHHH----hcCCceEEEEeCCCChH--HHHHHhcCCCCCCCCcEEEEEeCC
Q 001979 84 QEQLVSE----ILLDKNVKIWDVHKGCHMIRIK----LRHKRVLLVIDDVDEFD--QLQALAGQRDWFGLGSRIIITTRD 153 (987)
Q Consensus 84 ~~~ll~~----l~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTtR~ 153 (987)
.+.+... +..-........++..+.+... ..++.-++|||+++... .++.++..+.......++|+||++
T Consensus 79 Cr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd 158 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD 158 (830)
T ss_pred HHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 1111000 0000000000011111111111 12345588899998754 467777766555568888888887
Q ss_pred ccccc-c-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc-hhHHH
Q 001979 154 RHLLV-R-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP-LALEI 214 (987)
Q Consensus 154 ~~v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~ 214 (987)
.+-.. . ......++++.++.++..+.+.+.+....... ..+..+.|++.++|.. -|+..
T Consensus 159 ~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i--d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 159 PQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF--EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 64332 2 23457899999999999999987764333221 2366788999998865 34444
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=4.3e-06 Score=96.49 Aligned_cols=195 Identities=14% Similarity=0.099 Sum_probs=113.7
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
|...+++||.+...+.|..++..+. -.+.+.++|+.|+||||+|+.+++.+-.... .. ....+.....+
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~-----~~-----~~pCg~C~sC~ 79 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETG-----VT-----STPCEVCATCK 79 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcC-----CC-----CCCCccCHHHH
Confidence 3445789999999999999997542 2467789999999999999999987532110 00 00000000000
Q ss_pred HHHHH----HhcCCCcccccchhhHHHHHH----HhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCcc
Q 001979 86 QLVSE----ILLDKNVKIWDVHKGCHMIRI----KLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDRH 155 (987)
Q Consensus 86 ~ll~~----l~~~~~~~~~~~~~~~~~l~~----~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~~ 155 (987)
.+... +..-........++..+.+.. -..+++-++|+|+++.. ...+++...+.....+.++|++|.+.+
T Consensus 80 ~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~ 159 (702)
T PRK14960 80 AVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQ 159 (702)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChH
Confidence 00000 000000000001111111110 11356668999999874 456666666554456778888887653
Q ss_pred ccc-c-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHH
Q 001979 156 LLV-R-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALE 213 (987)
Q Consensus 156 v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 213 (987)
-.. . ......+++.+++.++..+.+...+-..... ...+....|++.++|.+-.+.
T Consensus 160 kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 160 KLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 221 1 2445789999999999999888776443322 223567889999999775444
No 61
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.59 E-value=6.2e-07 Score=89.40 Aligned_cols=178 Identities=17% Similarity=0.154 Sum_probs=97.7
Q ss_pred CCCCCccccchhHHHHHHHhcC---CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGT---GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 83 (987)
..-++|||.+.-++.+.-++.. ..+....+.+||++|+||||||..++++....|. +.+ ..... ...++
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~----~~s-g~~i~---k~~dl 92 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK----ITS-GPAIE---KAGDL 92 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE----EEE-CCC-----SCHHH
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE----ecc-chhhh---hHHHH
Confidence 3458999999999887766542 2345667889999999999999999999876664 121 00000 01111
Q ss_pred HHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--HHHHHHhcCCCCC--------CCCc--------
Q 001979 84 QEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--DQLQALAGQRDWF--------GLGS-------- 145 (987)
Q Consensus 84 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~--------~~gs-------- 145 (987)
. .++ ..+ +++-+|.+|++... .+-+.+.+....+ ++++
T Consensus 93 ~-~il----------------------~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 93 A-AIL----------------------TNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp H-HHH----------------------HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred H-HHH----------------------Hhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1 111 112 24557888999653 3334443332211 2222
Q ss_pred ---EEEEEeCCcccccccC--cCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhh
Q 001979 146 ---RIIITTRDRHLLVRCD--VEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSF 218 (987)
Q Consensus 146 ---~IiiTtR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~ 218 (987)
-|=-|||...+...+. ..-..+++..+.+|-.++..+.+..-..+ -..+.+.+|++++.|-|--..-+-..
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~--i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE--IDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E--E-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 2335777654433332 22345899999999999999887544333 23478999999999999655444333
No 62
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=4.2e-07 Score=104.83 Aligned_cols=191 Identities=18% Similarity=0.151 Sum_probs=114.1
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhc--CCCcceEEEEehH-hhhhc--cCH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISY--QFDDGSSFLANVR-EVSQT--RGL 80 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~-~~~~~--~~~ 80 (987)
|..-+++||.+.-.+.|..++..+. -...+.++|++|+||||+|+.+++.+.. .+. ..|+..... .+... .++
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~-~~cg~C~sc~~i~~~~h~dv 87 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDP-KPCGECESCLAVRRGAHPDV 87 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCC-CCCCcChhhHHHhcCCCCce
Confidence 3445789999999999999887642 3356789999999999999999997642 222 334432100 00000 000
Q ss_pred HHHHHHHHHHHhcCCCcccccchhhHHHHHHH-----hcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCC
Q 001979 81 VALQEQLVSEILLDKNVKIWDVHKGCHMIRIK-----LRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRD 153 (987)
Q Consensus 81 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~ 153 (987)
. .+....... .+ .+..+.+. ..+++-++|+|+++.. ..++.+...+....+.+.+|++|..
T Consensus 88 ~--------el~~~~~~~---vd-~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~ 155 (504)
T PRK14963 88 L--------EIDAASNNS---VE-DVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTE 155 (504)
T ss_pred E--------EecccccCC---HH-HHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCC
Confidence 0 000000000 11 11112221 1245668999999764 4577777666544456666666654
Q ss_pred c-cccccc-CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhH
Q 001979 154 R-HLLVRC-DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLAL 212 (987)
Q Consensus 154 ~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 212 (987)
. .+.... .....+++.+++.++..+.+...+-...... ..+.+..|++.++|.+--+
T Consensus 156 ~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 156 PEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred hhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 3 332222 3346899999999999999988775443221 2356888999999988544
No 63
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.4e-06 Score=96.16 Aligned_cols=194 Identities=15% Similarity=0.170 Sum_probs=126.1
Q ss_pred CCCCCCccccchhHHHHHHHhcC--CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcc-eEEEEehHhhhhccCHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGT--GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDG-SSFLANVREVSQTRGLVA 82 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~ 82 (987)
...|+.+.+|+.+++++...|.. .+....-+.|+|.+|.|||+.++.++++++...... +++++ +.......+
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~~ 88 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPYQ 88 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHHH
Confidence 44567799999999999988754 122223388999999999999999999987776534 67887 344456677
Q ss_pred HHHHHHHHHhcCCCcccccchhhHHHHHHHhc--CCceEEEEeCCCChH-----HHHHHhcCCCCCCCCcEE--EEEeCC
Q 001979 83 LQEQLVSEILLDKNVKIWDVHKGCHMIRIKLR--HKRVLLVIDDVDEFD-----QLQALAGQRDWFGLGSRI--IITTRD 153 (987)
Q Consensus 83 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~I--iiTtR~ 153 (987)
+..+++.++. ..........+..+.+.+.+. ++.++||||+++... .+-.+....... .++| |..+.+
T Consensus 89 i~~~i~~~~~-~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~ 165 (366)
T COG1474 89 VLSKILNKLG-KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSND 165 (366)
T ss_pred HHHHHHHHcC-CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEecc
Confidence 7778887754 222222344455556666664 578999999997642 334444433322 4443 334444
Q ss_pred ccccc--------ccCcCceEEcCCCCHHHHHHHHHHhhc---cCCCCCChHHHHHHHHHHHhCC
Q 001979 154 RHLLV--------RCDVEDTYMVEKLNYNEALHLFSWKAF---RKGHPTDGYFELSHSMVNYADG 207 (987)
Q Consensus 154 ~~v~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~G 207 (987)
..+.. .++. ..+..++-+.+|-.+++..++- ......++..+++..++.+.+|
T Consensus 166 ~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 166 DKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred HHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 33222 2222 2377899999999999998863 3334455555666666666665
No 64
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=8.1e-06 Score=93.47 Aligned_cols=186 Identities=17% Similarity=0.153 Sum_probs=108.1
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC----CCc----------------ce
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ----FDD----------------GS 65 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~----f~~----------------~~ 65 (987)
|..-+++||.+...+.+...+..+ .-.+.+.++|++|+||||+|+.+++.+... +.. ..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 344578999998888888877653 223567899999999999999999875321 000 01
Q ss_pred EEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHH-HHhcCCceEEEEeCCCCh--HHHHHHhcCCCCCC
Q 001979 66 SFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIR-IKLRHKRVLLVIDDVDEF--DQLQALAGQRDWFG 142 (987)
Q Consensus 66 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~ 142 (987)
..++ .+...++..+ +++... +. .-..+++-++|+|+++.. .+.+.+...+....
T Consensus 89 ~el~----aa~~~gid~i-R~i~~~------------------~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~ 145 (472)
T PRK14962 89 IELD----AASNRGIDEI-RKIRDA------------------VGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP 145 (472)
T ss_pred EEEe----CcccCCHHHH-HHHHHH------------------HhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC
Confidence 1111 0001111111 111111 00 012345679999999764 34566666554334
Q ss_pred CCcEEEEEeCC-ccccccc-CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCC-chhHHHHhh
Q 001979 143 LGSRIIITTRD-RHLLVRC-DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGL-PLALEILGS 217 (987)
Q Consensus 143 ~gs~IiiTtR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~l~~ 217 (987)
....+|++|.+ ..+.... .....+++.+++.++....+...+......- ..+....|+++++|. +.|+..+..
T Consensus 146 ~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i--~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 146 SHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI--DREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44555555544 3332222 3446899999999999999887764333221 235677888878664 566555544
No 65
>PRK08727 hypothetical protein; Validated
Probab=98.52 E-value=1.8e-06 Score=90.16 Aligned_cols=169 Identities=17% Similarity=0.129 Sum_probs=99.1
Q ss_pred CCCccccch-hHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHH
Q 001979 9 SEKLVGMDY-RLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQL 87 (987)
Q Consensus 9 ~~~~vGr~~-~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 87 (987)
.++||+... .+..+..... + .....+.|+|++|+|||+||+++++....+.. .+.|+. ..+ ....+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~-~~~y~~----~~~------~~~~~ 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGR-SSAYLP----LQA------AAGRL 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-cEEEEe----HHH------hhhhH
Confidence 355665554 3444444332 1 22245899999999999999999998766655 667775 111 00110
Q ss_pred HHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh---HHH-HHHhcCCCC-CCCCcEEEEEeCCccc------
Q 001979 88 VSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF---DQL-QALAGQRDW-FGLGSRIIITTRDRHL------ 156 (987)
Q Consensus 88 l~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IiiTtR~~~v------ 156 (987)
.. +.+.+ .+.-+|||||++.. ..+ +.+...++. ..+|..||+|++...-
T Consensus 85 ~~-------------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~ 144 (233)
T PRK08727 85 RD-------------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVL 144 (233)
T ss_pred HH-------------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhh
Confidence 00 11112 13348999999643 122 222222211 1346779999986311
Q ss_pred ---ccccCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhH
Q 001979 157 ---LVRCDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLAL 212 (987)
Q Consensus 157 ---~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 212 (987)
...+.....+++++++.++..+++.+++....... ..+....|++.+.|-.-++
T Consensus 145 ~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l--~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 145 PDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLAL--DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCHHHH
Confidence 11122346899999999999999998775433221 2356778888887765444
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.51 E-value=6e-07 Score=98.30 Aligned_cols=75 Identities=29% Similarity=0.604 Sum_probs=47.9
Q ss_pred hhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcE
Q 001979 518 VQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLEN 597 (987)
Q Consensus 518 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 597 (987)
+..+.+++.|++++|.++.+|. -..+|+.|.+++|..+..+|..+ .++|+.|.+++|..+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 3455777777777777777772 22357777777777777777644 24677777777766655553 3445
Q ss_pred eeCCCC
Q 001979 598 LDLGGT 603 (987)
Q Consensus 598 L~L~~~ 603 (987)
|++.++
T Consensus 117 L~L~~n 122 (426)
T PRK15386 117 LEIKGS 122 (426)
T ss_pred EEeCCC
Confidence 555443
No 67
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=3.7e-06 Score=94.49 Aligned_cols=194 Identities=14% Similarity=0.117 Sum_probs=111.6
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC--cceEEEEehHhhhhccCHHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFD--DGSSFLANVREVSQTRGLVALQ 84 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~ 84 (987)
...+++||.+.-++.|..++..+. -...+.++|+.|+||||+|+.+++.+-.... ...|... ..-..+.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C--------~sC~~i~ 85 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC--------TSCLEIT 85 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC--------cHHHHHH
Confidence 445789999999999999887542 2346789999999999999999997643211 0111110 0000000
Q ss_pred HHHHHHHhc---CCCcccccchhhHHHHHH-HhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCC-cccc
Q 001979 85 EQLVSEILL---DKNVKIWDVHKGCHMIRI-KLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRD-RHLL 157 (987)
Q Consensus 85 ~~ll~~l~~---~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~-~~v~ 157 (987)
......+.. ..+....+..+..+.+.. -..++.-++|+|+++.. +.+++++..+........+|.+|.+ ..+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 000000000 000001111111111111 12356679999999764 5578877766543445555555554 3333
Q ss_pred cc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchh
Q 001979 158 VR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLA 211 (987)
Q Consensus 158 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 211 (987)
.. ......|.+.+++.++..+.+.+.+-..... -..+....|++.++|.+--
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChHHH
Confidence 22 2344679999999999999888776433322 1235678899999998843
No 68
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.51 E-value=1.5e-06 Score=90.96 Aligned_cols=175 Identities=17% Similarity=0.175 Sum_probs=99.7
Q ss_pred CCCCCcc-ccchhH-HHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHH
Q 001979 7 SASEKLV-GMDYRL-EQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQ 84 (987)
Q Consensus 7 ~~~~~~v-Gr~~~~-~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 84 (987)
...++|+ |.+..+ ..+.++.. +....+.+.|+|+.|+|||+||+++++.....-. ...+++.... .
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~-~~~~i~~~~~-~--------- 82 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGR-NARYLDAASP-L--------- 82 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC-cEEEEehHHh-H---------
Confidence 3345666 554444 34444443 2233467889999999999999999997644333 4555552110 0
Q ss_pred HHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--HHHHHHhcCCCCC-CCCc-EEEEEeCCccccc--
Q 001979 85 EQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--DQLQALAGQRDWF-GLGS-RIIITTRDRHLLV-- 158 (987)
Q Consensus 85 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~-~~gs-~IiiTtR~~~v~~-- 158 (987)
..+ ... ...-+||+||++.. .+.+.+...+... ..+. .+|+|++......
T Consensus 83 ~~~-----------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l 138 (227)
T PRK08903 83 LAF-----------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPL 138 (227)
T ss_pred HHH-----------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCC
Confidence 000 001 23347889999653 2223333322211 2344 3666666432111
Q ss_pred ------ccCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhhh
Q 001979 159 ------RCDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSFL 219 (987)
Q Consensus 159 ------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L 219 (987)
.+.....++++++++++-.+++...+-.....- ..+..+.+++...|++..+..+...+
T Consensus 139 ~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l--~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 139 REDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQL--ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 112236889999999988777776543222222 23678888889999998877666544
No 69
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=5.8e-06 Score=95.23 Aligned_cols=202 Identities=14% Similarity=0.111 Sum_probs=114.8
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
|...+++||.+.-++.|.+.+..+ .-.+.+.++|+.|+||||+|+.+.+.+-..-.+..--+ .+...+......
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~-----~~~PCG~C~sC~ 85 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI-----TAQPCGQCRACT 85 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC-----CCCCCcccHHHH
Confidence 344578999999999999999754 22356789999999999999999997632100000000 000000000001
Q ss_pred HHHHH----HhcCCCcccccchhhHHHHHHH----hcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-
Q 001979 86 QLVSE----ILLDKNVKIWDVHKGCHMIRIK----LRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDR- 154 (987)
Q Consensus 86 ~ll~~----l~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~- 154 (987)
.+... +..-........++..+.+... ..++.-++|||+++.. ...+.|+..+..-..+.++|++|.+.
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 11000 0000000000111111111111 1345668999999874 45777877766555677766666554
Q ss_pred ccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHH
Q 001979 155 HLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEIL 215 (987)
Q Consensus 155 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 215 (987)
.+... ......+++..++.++..+.+.+.+-...... ..+..+.|++.++|.|.-...+
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 33322 23446899999999999998887653332221 1345688999999998654433
No 70
>PF13173 AAA_14: AAA domain
Probab=98.49 E-value=4.1e-07 Score=85.51 Aligned_cols=119 Identities=16% Similarity=0.163 Sum_probs=77.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL 113 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 113 (987)
+++.|.|+.|+||||++++++++.. ..+ ..++++...... .. .. . . +..+.+.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~-~~~yi~~~~~~~-----~~----~~-~-----------~-~~~~~~~~~~ 58 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPE-NILYINFDDPRD-----RR----LA-D-----------P-DLLEYFLELI 58 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccc-cceeeccCCHHH-----HH----Hh-h-----------h-hhHHHHHHhh
Confidence 6899999999999999999998765 223 556665211111 00 00 0 0 0122333334
Q ss_pred cCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCcccccc------cCcCceEEcCCCCHHHH
Q 001979 114 RHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDRHLLVR------CDVEDTYMVEKLNYNEA 176 (987)
Q Consensus 114 ~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~------~~~~~~~~l~~L~~~ea 176 (987)
..++.+|+||++....+|......+...++..+|++|+........ .+....+++.+|+..|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4478899999998877777766665555567899999998755432 12335789999998874
No 71
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.48 E-value=1.7e-06 Score=83.63 Aligned_cols=123 Identities=21% Similarity=0.230 Sum_probs=71.7
Q ss_pred cccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHh
Q 001979 13 VGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEIL 92 (987)
Q Consensus 13 vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 92 (987)
+|++..++++...+... ..+.+.|+|++|+||||+|+.+++.+...-. .++++.. .+... ...... .... .
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~-~v~~~~~-~~~~~---~~~~~~-~~~~-~ 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGA-PFLYLNA-SDLLE---GLVVAE-LFGH-F 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCC-CeEEEeh-hhhhh---hhHHHH-Hhhh-h
Confidence 47889999999888652 3467889999999999999999998753333 4555541 11111 000000 0000 0
Q ss_pred cCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh-----HHHHHHhcCCCCC---CCCcEEEEEeCCcc
Q 001979 93 LDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF-----DQLQALAGQRDWF---GLGSRIIITTRDRH 155 (987)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-----~~~~~l~~~~~~~---~~gs~IiiTtR~~~ 155 (987)
............++.+||+||++.. ..+.......... ..+.+||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001112223456789999999853 2233333333221 36788888888653
No 72
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=1.2e-05 Score=89.17 Aligned_cols=200 Identities=13% Similarity=0.053 Sum_probs=114.1
Q ss_pred CCCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhh-cCC-CcceEEEEehHhhhhccCHHH
Q 001979 5 LLSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNIS-YQF-DDGSSFLANVREVSQTRGLVA 82 (987)
Q Consensus 5 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~-~~f-~~~~~~~~~~~~~~~~~~~~~ 82 (987)
.|....++||.+...+.+.+.+..+ .-...+.++|+.|+||+|+|..+++.+- ..- ....+-... ......+...
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~--~~l~~~~~c~ 90 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP--TSLAIDPDHP 90 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc--ccccCCCCCh
Confidence 4555678999999999999988764 2235688999999999999999999752 221 101000000 0000000001
Q ss_pred HHHHHHHHHhcCCCc---------c------cccchhhHHHHHHHhc-----CCceEEEEeCCCCh--HHHHHHhcCCCC
Q 001979 83 LQEQLVSEILLDKNV---------K------IWDVHKGCHMIRIKLR-----HKRVLLVIDDVDEF--DQLQALAGQRDW 140 (987)
Q Consensus 83 l~~~ll~~l~~~~~~---------~------~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~~--~~~~~l~~~~~~ 140 (987)
..+.+... ...+. + .-.++ .+..+.+.+. +++-++|+||++.. .....+...+..
T Consensus 91 ~c~~i~~~--~HPDl~~i~~~~~~~~~~~~~~I~Vd-qiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 91 VARRIAAG--AHGGLLTLERSWNEKGKRLRTVITVD-EVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred HHHHHHcc--CCCCeEEEecccccccccccccccHH-HHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 11111110 00000 0 00011 1222223332 45678999999763 445666655544
Q ss_pred CCCCcEEEEEeCCcc-cccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 141 FGLGSRIIITTRDRH-LLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 141 ~~~gs~IiiTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
-..++.+|++|.+.. +... ......+++.+++.++..+++..... ... .+....+++.++|.|+....+.
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~---~~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP---DLP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc---cCC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 345677777777653 3222 23456899999999999999987541 111 1223678999999998665554
No 73
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.46 E-value=1.1e-05 Score=89.43 Aligned_cols=181 Identities=16% Similarity=0.173 Sum_probs=108.3
Q ss_pred CCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-CCcceEEEEehHhhhhccCHHHHHHHH
Q 001979 9 SEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ-FDDGSSFLANVREVSQTRGLVALQEQL 87 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l 87 (987)
-++++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+++.+... +. ..++... .+...+...+ .+.
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~--~~~i~~~--~~~~~~~~~~-~~~ 88 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWR--ENFLELN--ASDERGIDVI-RNK 88 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccc--cceEEec--cccccchHHH-HHH
Confidence 467999999999999998653 33457899999999999999999976332 22 1122210 1111111111 111
Q ss_pred HHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-ccccc-cCcC
Q 001979 88 VSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDR-HLLVR-CDVE 163 (987)
Q Consensus 88 l~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~-~v~~~-~~~~ 163 (987)
+..+..... .....+-+|++|+++.. +..+.+...+....+.+++|+++... .+... ....
T Consensus 89 i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 89 IKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 111110000 00123568999999764 23444544444445567777777543 22221 1234
Q ss_pred ceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHH
Q 001979 164 DTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALE 213 (987)
Q Consensus 164 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 213 (987)
..+++++++.++....+...+...... -..+.+..+++.++|.+--+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 578999999999999988877543322 124578889999999876543
No 74
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.46 E-value=1.1e-05 Score=90.97 Aligned_cols=185 Identities=15% Similarity=0.156 Sum_probs=113.2
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC----CCc----------------ce
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ----FDD----------------GS 65 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~----f~~----------------~~ 65 (987)
|..-+++||.+..++.+.+.+..+ .-.+.+.++|++|+||||+|+.++..+... +.. ..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 344578899999999999988653 233577899999999999999999876422 110 01
Q ss_pred EEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH-HhcCCceEEEEeCCCCh--HHHHHHhcCCCCCC
Q 001979 66 SFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI-KLRHKRVLLVIDDVDEF--DQLQALAGQRDWFG 142 (987)
Q Consensus 66 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~ 142 (987)
.+++. ....... ..++++.. +.. -..+++-++|+|+++.. ...+.+...+....
T Consensus 89 ~~~~~----~~~~~~~-~~~~l~~~------------------~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~ 145 (355)
T TIGR02397 89 IEIDA----ASNNGVD-DIREILDN------------------VKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP 145 (355)
T ss_pred EEeec----cccCCHH-HHHHHHHH------------------HhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCc
Confidence 11110 0000000 01111111 100 01244558899999764 44666666555445
Q ss_pred CCcEEEEEeCCcc-cccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 143 LGSRIIITTRDRH-LLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 143 ~gs~IiiTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
+.+.+|++|.+.. +... ......+++++++.++..+++...+-......+ .+.+..+++.++|.|..+....
T Consensus 146 ~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~--~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 146 EHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE--DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred cceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCChHHHHHHH
Confidence 5677777776543 2222 123457899999999999999887644332222 3678889999999987665444
No 75
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=7.1e-06 Score=94.84 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=110.8
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC--c------------------ceE
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFD--D------------------GSS 66 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~--~------------------~~~ 66 (987)
...+++||.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.... . ...
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 44578999999999999988653 22356789999999999999999987532111 0 011
Q ss_pred EEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH-HhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCC
Q 001979 67 FLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI-KLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGL 143 (987)
Q Consensus 67 ~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~ 143 (987)
+++ .....++.++ ++++ +.+.. -..+++-++|+|+++.. ...+.++..+.....
T Consensus 92 eid----aas~~gvd~i-r~ii------------------~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~ 148 (546)
T PRK14957 92 EID----AASRTGVEET-KEIL------------------DNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPE 148 (546)
T ss_pred Eee----cccccCHHHH-HHHH------------------HHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCC
Confidence 111 0001111110 1111 11111 12356679999999764 456777766654455
Q ss_pred CcEEEEEeCCc-ccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCch-hHHHH
Q 001979 144 GSRIIITTRDR-HLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPL-ALEIL 215 (987)
Q Consensus 144 gs~IiiTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~l 215 (987)
.+.+|++|.+. .+... ......+++.+++.++..+.+...+-..... ...+....|++.++|.+- |+..+
T Consensus 149 ~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~--~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 149 YVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN--SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 67666555544 33322 2345789999999999988887655332221 223567788999999664 43333
No 76
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.43 E-value=1.1e-06 Score=83.21 Aligned_cols=114 Identities=21% Similarity=0.285 Sum_probs=75.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCC----CcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQF----DDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHM 108 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f----~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 108 (987)
-+.+.|+|++|+|||++++.+++.....+ ...++|+. .........+...++..+...... ..+..+..+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHH
Confidence 46889999999999999999999765421 22566776 444457788888888886544333 2345555667
Q ss_pred HHHHhcCCc-eEEEEeCCCCh---HHHHHHhcCCCCCCCCcEEEEEeCC
Q 001979 109 IRIKLRHKR-VLLVIDDVDEF---DQLQALAGQRDWFGLGSRIIITTRD 153 (987)
Q Consensus 109 l~~~L~~k~-~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTtR~ 153 (987)
+.+.+...+ .+||+||++.. +.++.+....+ ..+.++|+..++
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 777776554 59999999765 33555544333 667788887775
No 77
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=1.2e-05 Score=93.89 Aligned_cols=197 Identities=15% Similarity=0.099 Sum_probs=111.4
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
|...+++||.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+-..-. .-+.. .+......
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~--~~~~p--------Cg~C~sCr 80 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENA--QHGEP--------CGVCQSCT 80 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCC--CCCCC--------CcccHHHH
Confidence 344578999999999999998753 22367889999999999999999987532111 00000 00000000
Q ss_pred HHHHH----HhcCCCcccccchhhHHHHHH----HhcCCceEEEEeCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCcc
Q 001979 86 QLVSE----ILLDKNVKIWDVHKGCHMIRI----KLRHKRVLLVIDDVDEFD--QLQALAGQRDWFGLGSRIIITTRDRH 155 (987)
Q Consensus 86 ~ll~~----l~~~~~~~~~~~~~~~~~l~~----~L~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTtR~~~ 155 (987)
.+... +..-........+...+.+.. -..+++-++|||+++... ..+.++..+......+++|++|.+.+
T Consensus 81 ~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~ 160 (709)
T PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160 (709)
T ss_pred HHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 00000 000000000001111111111 012456689999998743 35555555543345677777776543
Q ss_pred -cccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHH
Q 001979 156 -LLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEIL 215 (987)
Q Consensus 156 -v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 215 (987)
+... .+....+++.+++.++..+.+.+.+-...... ..+....|++.++|.+.-+..+
T Consensus 161 kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHHHHHHH
Confidence 2222 23345788899999999999987764433221 2356789999999988544433
No 78
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.42 E-value=1.3e-07 Score=92.56 Aligned_cols=81 Identities=20% Similarity=0.342 Sum_probs=21.4
Q ss_pred CCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCC-CCCCcccEEeccCCcCCcc-ccCccccCCCCcEEe
Q 001979 419 PERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDF-TGVPKLERLVLDGCTNLSF-VHPSIGLLKRLKVLN 496 (987)
Q Consensus 419 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~-~~l~~L~~L~L~~~~~l~~-~~~~i~~l~~L~~L~ 496 (987)
+.+|+.|++++|.|+++ +++..+++|+.|++++|.+....+.+ ..+++|++|++++|..-.. .-..+..+++|++|+
T Consensus 41 l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp -TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred hcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 34455555555555544 23444555555555555444332222 2345555555554432110 012344555555555
Q ss_pred CcCC
Q 001979 497 MKEC 500 (987)
Q Consensus 497 L~~c 500 (987)
|.+|
T Consensus 120 L~~N 123 (175)
T PF14580_consen 120 LEGN 123 (175)
T ss_dssp -TT-
T ss_pred ccCC
Confidence 5555
No 79
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=3.9e-06 Score=92.18 Aligned_cols=178 Identities=17% Similarity=0.197 Sum_probs=111.4
Q ss_pred CCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-----CCcceEEEEehHhhhhccCHHHHH
Q 001979 10 EKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ-----FDDGSSFLANVREVSQTRGLVALQ 84 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l~ 84 (987)
++++|.+...+.+...+..+ .-.+...++|+.|+||||+|+.++..+-.. +++...|.. . ......+.++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~--~~~~i~v~~i- 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-I--NKKSIGVDDI- 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-c--cCCCCCHHHH-
Confidence 57899999999999998653 234677899999999999999999975322 221222221 0 0111222221
Q ss_pred HHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCC--hHHHHHHhcCCCCCCCCcEEEEEeCCcccc-cc-c
Q 001979 85 EQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDE--FDQLQALAGQRDWFGLGSRIIITTRDRHLL-VR-C 160 (987)
Q Consensus 85 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~-~~-~ 160 (987)
+++...+.. .-..+++=++|+|+++. ...++++...+..-.+++.+|++|.+...+ .. .
T Consensus 79 r~~~~~~~~-----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 79 RNIIEEVNK-----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHhc-----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 222222110 00123444666676644 566888888777667788998888765322 22 2
Q ss_pred CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHH
Q 001979 161 DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEIL 215 (987)
Q Consensus 161 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 215 (987)
.....+++.+++.++....+..... . . ..+.++.++.+++|.|..+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~-~--~---~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYN-D--I---KEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhc-C--C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 3457899999999999888865431 1 1 1244778899999998765444
No 80
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=6e-09 Score=105.18 Aligned_cols=175 Identities=22% Similarity=0.260 Sum_probs=122.6
Q ss_pred CceEEEcCCCCcc--ccccccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCcccc--CccccCCCCcEE
Q 001979 421 RLFKLNICYSLVE--QLWQGVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVH--PSIGLLKRLKVL 495 (987)
Q Consensus 421 ~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~--~~i~~l~~L~~L 495 (987)
+|++|||+++.|+ ++-.-++.|.+|+.|.|.+++....+-. +.+-.+|+.|+|++|..++... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5888999998887 3444567899999999999887655443 7788999999999998877533 246789999999
Q ss_pred eCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCC----cccCccccCCCCCCEEeccCCCCCcc-cCccCCCCCC
Q 001979 496 NMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSI----EEIPPSIKFLSRLTVLTLRDCKKLVS-LPSSISDLRS 570 (987)
Q Consensus 496 ~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i----~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~l~~l~~ 570 (987)
||++|...+..-..+ .-.--++|..|+|+++.= ..+..-...+++|.+|||++|..+.. .-..|.+++.
T Consensus 266 NlsWc~l~~~~Vtv~------V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVA------VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred CchHhhccchhhhHH------HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 999996554432111 123446788888888732 23333356789999999999876654 2233667888
Q ss_pred CCEEEecCCCCCCcccc---cccCCCCCcEeeCCCC
Q 001979 571 LKVLNLNGCSKLEEVPE---NLGHIASLENLDLGGT 603 (987)
Q Consensus 571 L~~L~l~~c~~l~~lp~---~l~~l~~L~~L~L~~~ 603 (987)
|++|.++.|..+ .|+ .+..+++|.+|++.++
T Consensus 340 L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 340 LQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred heeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 999999988653 233 2344555666655443
No 81
>PRK05642 DNA replication initiation factor; Validated
Probab=98.41 E-value=6.6e-06 Score=85.95 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=91.8
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL 113 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 113 (987)
..+.|||..|+|||+||+++++.+..+-. .++|++. . ++ ... ...+.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~-~v~y~~~----~------~~----~~~---------------~~~~~~~~ 95 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGE-PAVYLPL----A------EL----LDR---------------GPELLDNL 95 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCC-cEEEeeH----H------HH----Hhh---------------hHHHHHhh
Confidence 57889999999999999999998765544 6777761 1 11 100 01223333
Q ss_pred cCCceEEEEeCCCCh---HHHHH-HhcCCCC-CCCCcEEEEEeCCccc-ccc--------cCcCceEEcCCCCHHHHHHH
Q 001979 114 RHKRVLLVIDDVDEF---DQLQA-LAGQRDW-FGLGSRIIITTRDRHL-LVR--------CDVEDTYMVEKLNYNEALHL 179 (987)
Q Consensus 114 ~~k~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~IiiTtR~~~v-~~~--------~~~~~~~~l~~L~~~ea~~L 179 (987)
++-. +||+||++.. .+|+. +...++. ...|.+||+|++...- ... +....++++++++.++..++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3332 6788999532 23322 3333221 1357788998875321 111 12336789999999999999
Q ss_pred HHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 180 FSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 180 f~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
+..++......-+ .++...|++++.|..-++..+-
T Consensus 175 l~~ka~~~~~~l~--~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 175 LQLRASRRGLHLT--DEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHHHHH
Confidence 9877644322211 4677888888888765554443
No 82
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.41 E-value=8.5e-07 Score=89.65 Aligned_cols=50 Identities=28% Similarity=0.442 Sum_probs=35.6
Q ss_pred CccccchhHHHHHHHhcC-CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 11 KLVGMDYRLEQIYLMLGT-GLDEARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 11 ~~vGr~~~~~~l~~~L~~-~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
.||||+++++++...+.. .....+.+.|+|++|+|||+|+++++.++..+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999942 23456899999999999999999999988766
No 83
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=6.3e-06 Score=96.71 Aligned_cols=197 Identities=16% Similarity=0.142 Sum_probs=114.5
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
|...+++||.+.-++.|...+..+. -...+.++|+.|+||||+|+.+++.+-.... . .....+.....+
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~--~--------~~~pCg~C~~C~ 80 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETG--I--------TATPCGECDNCR 80 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccC--C--------CCCCCCCCHHHH
Confidence 3455789999999999999987542 2355789999999999999999987532210 0 000000001111
Q ss_pred HHHHH----H--hcCC-CcccccchhhHHHHHH-HhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCcc
Q 001979 86 QLVSE----I--LLDK-NVKIWDVHKGCHMIRI-KLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDRH 155 (987)
Q Consensus 86 ~ll~~----l--~~~~-~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~~ 155 (987)
++... + .... .....+..+..+.+.. -..+++-++|||+++.. ...++++..+.......++|++|.+.+
T Consensus 81 ~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 81 EIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred HHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 11100 0 0000 0011111111111111 12356679999999764 457777766654456677776666543
Q ss_pred -cccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHH
Q 001979 156 -LLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEIL 215 (987)
Q Consensus 156 -v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 215 (987)
+... ......|++.+++.++..+.+.+.+-...... ..+....|++.++|.+--+..+
T Consensus 161 kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~--e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF--EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 3322 23457899999999999999887653322221 2356778999999988644433
No 84
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=3.1e-05 Score=90.87 Aligned_cols=195 Identities=14% Similarity=0.129 Sum_probs=112.8
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC---cceEEEEehHhhhhccCHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFD---DGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~l 83 (987)
...+++||-+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+-..-. .+... ...+....
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~--------~pCg~C~~ 83 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA--------TPCGVCQA 83 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC--------CCCCccHH
Confidence 44578999999899999998754 23366789999999999999999887532100 00000 00111111
Q ss_pred HHHHHHHHhcCCCc-ccc-cchhhHHHHHHHh--------cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEe
Q 001979 84 QEQLVSEILLDKNV-KIW-DVHKGCHMIRIKL--------RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITT 151 (987)
Q Consensus 84 ~~~ll~~l~~~~~~-~~~-~~~~~~~~l~~~L--------~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTt 151 (987)
.+.+... ...+. ... ......+.+++.+ .++.-++|||+|+.. ...+.+...+..-....++|++|
T Consensus 84 C~~i~~g--~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 84 CRDIDSG--RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHcC--CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 1111000 00000 000 0001111222221 234558999999874 45777777665545566777666
Q ss_pred CCc-ccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHH
Q 001979 152 RDR-HLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEI 214 (987)
Q Consensus 152 R~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 214 (987)
.+. .+... ......+++++++.++..+.+...+.......+ .+....|++.++|.+--+..
T Consensus 162 td~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie--~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 162 TDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE--PQALRLLARAARGSMRDALS 224 (618)
T ss_pred CCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHH
Confidence 553 33322 234578999999999999999877644332222 35678889999997754443
No 85
>PRK09087 hypothetical protein; Validated
Probab=98.39 E-value=6.6e-06 Score=85.15 Aligned_cols=139 Identities=14% Similarity=0.098 Sum_probs=86.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIK 112 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 112 (987)
.+.+.|||++|+|||+|+++++... ...+++. . .+..+++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~------~~~~i~~----~------~~~~~~~~~---------------------- 85 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS------DALLIHP----N------EIGSDAANA---------------------- 85 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc------CCEEecH----H------HcchHHHHh----------------------
Confidence 3568999999999999999988753 3335541 0 111112211
Q ss_pred hcCCceEEEEeCCCCh----HHHHHHhcCCCCCCCCcEEEEEeCCc---------ccccccCcCceEEcCCCCHHHHHHH
Q 001979 113 LRHKRVLLVIDDVDEF----DQLQALAGQRDWFGLGSRIIITTRDR---------HLLVRCDVEDTYMVEKLNYNEALHL 179 (987)
Q Consensus 113 L~~k~~LlVlDdv~~~----~~~~~l~~~~~~~~~gs~IiiTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~L 179 (987)
+.+ -+|++||++.. +.+-.+..... ..|..||+|++.. .+...+.....+++++++.++-.++
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~i 161 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQV 161 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHH
Confidence 111 27888999542 22322222221 3477899988742 2222234557899999999999999
Q ss_pred HHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHH
Q 001979 180 FSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEIL 215 (987)
Q Consensus 180 f~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 215 (987)
+.+.+-..... -.+++...|++++.|..-++..+
T Consensus 162 L~~~~~~~~~~--l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 162 IFKLFADRQLY--VDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHHhhhhHHHHHHH
Confidence 99887443222 22467888888888877666543
No 86
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=9.7e-06 Score=93.14 Aligned_cols=194 Identities=15% Similarity=0.154 Sum_probs=111.7
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC--cceEEEEehHhhhhccCHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFD--DGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l 83 (987)
|...+++||.+.-++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-. ....+.. .+....
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~--------C~~C~~ 87 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT--------CEQCTN 87 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC--------CCCChH
Confidence 344578899999999998877653 22367889999999999999999997632210 0000000 000000
Q ss_pred HHHHHHHHhcCCCc------ccccchhhHHHHHH----HhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEe
Q 001979 84 QEQLVSEILLDKNV------KIWDVHKGCHMIRI----KLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITT 151 (987)
Q Consensus 84 ~~~ll~~l~~~~~~------~~~~~~~~~~~l~~----~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTt 151 (987)
...+... ...+. .....++....+.. -..+++-++|+|+++.. ..++++...+....+.+.+|++|
T Consensus 88 C~~i~~~--~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aT 165 (507)
T PRK06645 88 CISFNNH--NHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFAT 165 (507)
T ss_pred HHHHhcC--CCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEe
Confidence 0000000 00000 00011111111111 12356678999999874 45777776665445566666544
Q ss_pred -CCccccccc-CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhH
Q 001979 152 -RDRHLLVRC-DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLAL 212 (987)
Q Consensus 152 -R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 212 (987)
+...+.... .....+++.+++.++..+.+...+-...... ..+....|++.++|.+--+
T Consensus 166 te~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 166 TEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred CChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 444443332 3446799999999999999988875443221 2355778999999977444
No 87
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.38 E-value=6.4e-06 Score=86.18 Aligned_cols=172 Identities=14% Similarity=0.163 Sum_probs=98.7
Q ss_pred CCcc-ccch-hHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHH
Q 001979 10 EKLV-GMDY-RLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQL 87 (987)
Q Consensus 10 ~~~v-Gr~~-~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 87 (987)
++|+ |.+. .+..+.++... ...+.+.|+|+.|+|||+||+++++....+-. .+.|+. ..... ....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~-~v~y~~----~~~~~---~~~~-- 89 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGR-AVGYVP----LDKRA---WFVP-- 89 (235)
T ss_pred cccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEE----HHHHh---hhhH--
Confidence 4444 6333 33444444432 23357889999999999999999998765543 566665 21100 0000
Q ss_pred HHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh---HHHHH-HhcCCCC-CCCC-cEEEEEeCCcccc----
Q 001979 88 VSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF---DQLQA-LAGQRDW-FGLG-SRIIITTRDRHLL---- 157 (987)
Q Consensus 88 l~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~g-s~IiiTtR~~~v~---- 157 (987)
.+.+.+.. --+|++||++.. .+|+. +...++. ...| .++|+||+.....
T Consensus 90 --------------------~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~ 148 (235)
T PRK08084 90 --------------------EVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLG 148 (235)
T ss_pred --------------------HHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcc
Confidence 11111111 137899999653 23322 2111111 1233 4799999865211
Q ss_pred -----cccCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 158 -----VRCDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 158 -----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
..+....+++++++++++-.+++.+++...... -.+++...|++++.|..-++..+-
T Consensus 149 ~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~--l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 149 LPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFE--LPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred cHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhhcCCHHHHHHHH
Confidence 112344689999999999999998766433222 224678888888888765554443
No 88
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.37 E-value=3.2e-06 Score=95.24 Aligned_cols=172 Identities=16% Similarity=0.204 Sum_probs=98.8
Q ss_pred CCCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc
Q 001979 9 SEKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT 77 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 77 (987)
.++++|++.+++++.+.+.. +-...+-|.++|++|+|||++|++++++....|- .+. ..
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i----~v~-~~----- 199 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI----RVV-GS----- 199 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE----Eee-hH-----
Confidence 35678999999999886632 1123466889999999999999999997643322 111 00
Q ss_pred cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH-HhcCCceEEEEeCCCCh------------HH----HHHHhcCCCC
Q 001979 78 RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI-KLRHKRVLLVIDDVDEF------------DQ----LQALAGQRDW 140 (987)
Q Consensus 78 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~------------~~----~~~l~~~~~~ 140 (987)
. +.....+. .......+.+ .-...+.+|+|||++.. .. +..+......
T Consensus 200 ----~----l~~~~~g~-------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 264 (389)
T PRK03992 200 ----E----LVQKFIGE-------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG 264 (389)
T ss_pred ----H----HhHhhccc-------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc
Confidence 1 11110000 0011111111 22346789999999753 11 2223322221
Q ss_pred C--CCCcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhhccCCCCC-ChHHHHHHHHHHHhCCCc
Q 001979 141 F--GLGSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPT-DGYFELSHSMVNYADGLP 209 (987)
Q Consensus 141 ~--~~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~G~P 209 (987)
. ..+.+||.||.....+.. ...+..++++..+.++..++|..++.+...+. .+ ...+++.+.|.-
T Consensus 265 ~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 265 FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 1 235677777776433222 12456899999999999999998875433322 22 345566666643
No 89
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.37 E-value=1.5e-06 Score=95.19 Aligned_cols=64 Identities=25% Similarity=0.431 Sum_probs=46.8
Q ss_pred ccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCC-CCCCCCc
Q 001979 541 IKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGT-AIRRPPS 610 (987)
Q Consensus 541 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~-~i~~~p~ 610 (987)
+..+.+++.|++++| .+..+|. -..+|+.|.+++|..+..+|+.+. .+|+.|++++| .+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 455788999999998 6777773 234699999999988888887553 57778877776 5544443
No 90
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.36 E-value=3e-06 Score=88.30 Aligned_cols=173 Identities=18% Similarity=0.237 Sum_probs=100.4
Q ss_pred CCccccchhHHH---HHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHH
Q 001979 10 EKLVGMDYRLEQ---IYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQ 86 (987)
Q Consensus 10 ~~~vGr~~~~~~---l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (987)
+++||.+.-+-+ |.+++. .+...-+.+||++|+||||||+.+...-+.+ ...|+. .+....-..-.+.
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~---Syrfve----lSAt~a~t~dvR~ 208 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKH---SYRFVE----LSATNAKTNDVRD 208 (554)
T ss_pred HHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCC---ceEEEE----EeccccchHHHHH
Confidence 456666554433 333333 2456677899999999999999999864432 234454 2221111111222
Q ss_pred HHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCC--hHHHHHHhcCCCCCCCCcEEEE--EeCCccccc---c
Q 001979 87 LVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDE--FDQLQALAGQRDWFGLGSRIII--TTRDRHLLV---R 159 (987)
Q Consensus 87 ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Iii--TtR~~~v~~---~ 159 (987)
++++. .=...+..+|.+|.+|+|.. ..|-+.+++. ..+|.-++| ||.++..-- .
T Consensus 209 ife~a----------------q~~~~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~aL 269 (554)
T KOG2028|consen 209 IFEQA----------------QNEKSLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNAAL 269 (554)
T ss_pred HHHHH----------------HHHHhhhcceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhHHH
Confidence 33221 11123567899999999954 4455555544 356777766 777764321 1
Q ss_pred cCcCceEEcCCCCHHHHHHHHHHhhc---cCCC---CCCh-----HHHHHHHHHHHhCCCch
Q 001979 160 CDVEDTYMVEKLNYNEALHLFSWKAF---RKGH---PTDG-----YFELSHSMVNYADGLPL 210 (987)
Q Consensus 160 ~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~---~~~~-----~~~~~~~i~~~~~G~PL 210 (987)
.....++-+++|..++...++.+..- .... +.+. ...+.+-++..|+|-.-
T Consensus 270 lSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 270 LSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 24557899999999999999887432 2222 2111 22355566677777553
No 91
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.36 E-value=7.1e-06 Score=98.40 Aligned_cols=173 Identities=25% Similarity=0.273 Sum_probs=102.3
Q ss_pred CCCCCccccchhHH---HHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHH
Q 001979 7 SASEKLVGMDYRLE---QIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 7 ~~~~~~vGr~~~~~---~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 83 (987)
..-+++||.+..+. .+.+.+.. +....+.|+|++|+||||+|+.+++.....|. .++. + ..++.++
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~----~lna----~-~~~i~di 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS----SLNA----V-LAGVKDL 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce----eehh----h-hhhhHHH
Confidence 33467899998774 46666654 34556789999999999999999998765553 1221 0 0111111
Q ss_pred HHHHHHHHhcCCCcccccchhhHHHHHHHh--cCCceEEEEeCCCC--hHHHHHHhcCCCCCCCCcEEEEE--eCCcc--
Q 001979 84 QEQLVSEILLDKNVKIWDVHKGCHMIRIKL--RHKRVLLVIDDVDE--FDQLQALAGQRDWFGLGSRIIIT--TRDRH-- 155 (987)
Q Consensus 84 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiT--tR~~~-- 155 (987)
++.+. ...+.+ .+++.+|||||++. ..+.+.+.... ..|..++|+ |.+..
T Consensus 94 -r~~i~------------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~ 151 (725)
T PRK13341 94 -RAEVD------------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFE 151 (725)
T ss_pred -HHHHH------------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhh
Confidence 11111 111111 24677999999975 44566666543 345555553 33321
Q ss_pred cccc-cCcCceEEcCCCCHHHHHHHHHHhhccC-----CCCCChHHHHHHHHHHHhCCCchhH
Q 001979 156 LLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRK-----GHPTDGYFELSHSMVNYADGLPLAL 212 (987)
Q Consensus 156 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~-----~~~~~~~~~~~~~i~~~~~G~PLal 212 (987)
+... ......+++++++.++..+++.+.+-.. .....-..+..+.|++++.|..-.+
T Consensus 152 l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 152 VNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred hhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 1111 1234579999999999999998765310 1111222456788888888875433
No 92
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=2.6e-05 Score=90.26 Aligned_cols=189 Identities=15% Similarity=0.116 Sum_probs=106.7
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
|..-+++||.+..++.+.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+...- |.. ....+-....+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~-----~~~-----~~~Cg~C~sCr 80 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN-----PKD-----GDCCNSCSVCE 80 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCC-----CCC-----CCCCcccHHHH
Confidence 344578999999999999988653 2236788999999999999999999763211 100 00000011111
Q ss_pred HHHHHHhcCCCc-cc-----ccchhhHHHHHHH-----hcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeC
Q 001979 86 QLVSEILLDKNV-KI-----WDVHKGCHMIRIK-----LRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTR 152 (987)
Q Consensus 86 ~ll~~l~~~~~~-~~-----~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR 152 (987)
.+.... ..+. .. ...++ +..+.+. ..+++=++|+|+++.. ....++...+......+.+|++|.
T Consensus 81 ~i~~~~--h~DiieIdaas~igVd~-IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt 157 (605)
T PRK05896 81 SINTNQ--SVDIVELDAASNNGVDE-IRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATT 157 (605)
T ss_pred HHHcCC--CCceEEeccccccCHHH-HHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 111100 0000 00 00111 1111111 1123336999999763 445666665443344566665554
Q ss_pred Cc-ccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCch
Q 001979 153 DR-HLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPL 210 (987)
Q Consensus 153 ~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 210 (987)
.. .+... ......+++.+++.++....+...+-.....- ..+.+..+++.++|.+-
T Consensus 158 ~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I--s~eal~~La~lS~GdlR 215 (605)
T PRK05896 158 EFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI--EDNAIDKIADLADGSLR 215 (605)
T ss_pred ChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHH
Confidence 33 33322 23456899999999999998887664332211 13567889999999764
No 93
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.1e-05 Score=91.83 Aligned_cols=182 Identities=14% Similarity=0.142 Sum_probs=112.2
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC--------------------cce
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFD--------------------DGS 65 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~--------------------~~~ 65 (987)
|...+++||.+.-++.+...+..+. -.+.+.++|+.|+||||+|+.++..+-.... ..+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 3445789999999999988886532 2357889999999999999999986422111 011
Q ss_pred EEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCC
Q 001979 66 SFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGL 143 (987)
Q Consensus 66 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~ 143 (987)
+.++ .+...++.++ ++++..... .-..+++-++|+|+++.. +..+++...+....+
T Consensus 88 ~eid----aas~~~vddI-R~Iie~~~~-----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 88 IEID----AASNTSVDDI-KVILENSCY-----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAP 145 (491)
T ss_pred EEEe----cccCCCHHHH-HHHHHHHHh-----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCC
Confidence 2221 1111111111 111111000 001245568999999764 446777666655556
Q ss_pred CcEEEEEeCC-cccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhH
Q 001979 144 GSRIIITTRD-RHLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLAL 212 (987)
Q Consensus 144 gs~IiiTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 212 (987)
.+++|++|.+ +.+... ......+++.+++.++..+.+...+......- ..+..+.|++.++|.+-.+
T Consensus 146 ~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 146 HVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred CeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 7777776644 333322 23456899999999999999988775443322 2356778999999987543
No 94
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=2e-05 Score=91.25 Aligned_cols=184 Identities=13% Similarity=0.088 Sum_probs=110.9
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC--CCc------------------ce
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ--FDD------------------GS 65 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--f~~------------------~~ 65 (987)
|...+++||-+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+-.. ... ..
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 345578999999999999999753 223567899999999999999999975221 110 01
Q ss_pred EEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCC
Q 001979 66 SFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGL 143 (987)
Q Consensus 66 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~ 143 (987)
..++ .....++.++ ++++..+.. .-..++.-++|+|+|+.. ...+++...+....+
T Consensus 91 ~eid----aas~~~v~~i-R~l~~~~~~-----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~ 148 (509)
T PRK14958 91 FEVD----AASRTKVEDT-RELLDNIPY-----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPS 148 (509)
T ss_pred EEEc----ccccCCHHHH-HHHHHHHhh-----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCC
Confidence 1111 0011111111 111111000 001245568999999874 456667666654456
Q ss_pred CcEEEEEeCCc-ccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHH
Q 001979 144 GSRIIITTRDR-HLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEI 214 (987)
Q Consensus 144 gs~IiiTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 214 (987)
.+++|++|.+. .+... ......+++++++.++..+.+...+-......+ .+....|++.++|.+.-+..
T Consensus 149 ~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~--~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 149 HVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE--NAALDLLARAANGSVRDALS 219 (509)
T ss_pred CeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHH
Confidence 77777766554 22222 233467899999999988877666533332211 34577889999998854443
No 95
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.33 E-value=1.7e-05 Score=81.83 Aligned_cols=182 Identities=16% Similarity=0.127 Sum_probs=99.8
Q ss_pred CCc-cccchh-HHH-HHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCc-ceEEEEehHhhhhccCHHHHHH
Q 001979 10 EKL-VGMDYR-LEQ-IYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDD-GSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 10 ~~~-vGr~~~-~~~-l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
++| +|-..+ .-. ..............+.|+|..|+|||.|.+++++++....++ .+++++ ..+...
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~ 77 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIR 77 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHH
Confidence 444 575333 223 333333322334568899999999999999999987655432 455664 122333
Q ss_pred HHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH---HH-HHHhcCCCC-CCCCcEEEEEeCCc-ccccc
Q 001979 86 QLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD---QL-QALAGQRDW-FGLGSRIIITTRDR-HLLVR 159 (987)
Q Consensus 86 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~IiiTtR~~-~v~~~ 159 (987)
.+...+.. .....+++.+++ -=+|+|||++... .| +.+...++. ...|.+||+|++.. .-+..
T Consensus 78 ~~~~~~~~----------~~~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 78 EFADALRD----------GEIEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSG 146 (219)
T ss_dssp HHHHHHHT----------TSHHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT
T ss_pred HHHHHHHc----------ccchhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc
Confidence 33333211 122345566653 3477899996532 12 222222211 13577899999654 22221
Q ss_pred --------cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHH
Q 001979 160 --------CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEI 214 (987)
Q Consensus 160 --------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 214 (987)
+...-.+++++++.++..+++.+.|......- -.++++.|++.+.+..-.+.-
T Consensus 147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l--~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIEL--PEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S---HHHHHHHHHHTTSSHHHHHH
T ss_pred cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHhhcCCHHHHHH
Confidence 12445899999999999999999885544332 236677777777766544443
No 96
>PTZ00202 tuzin; Provisional
Probab=98.32 E-value=5e-05 Score=82.75 Aligned_cols=167 Identities=14% Similarity=0.104 Sum_probs=102.8
Q ss_pred CCCCCCCCccccchhHHHHHHHhcCCC-CCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHH
Q 001979 4 TLLSASEKLVGMDYRLEQIYLMLGTGL-DEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVA 82 (987)
Q Consensus 4 ~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 82 (987)
..|.....||||+.++.++...|...+ ...++++|.|++|+|||||++.+..... ...++.+. .+..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNp------rg~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDV------RGTED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECC------CCHHH
Confidence 457778999999999999999996432 3457999999999999999999997653 22444322 25578
Q ss_pred HHHHHHHHHhcCCCcccccchhhHHHHHHHh-----c-CCceEEEEeC--CCChHHHHHHhcCCCCCCCCcEEEEEeCCc
Q 001979 83 LQEQLVSEILLDKNVKIWDVHKGCHMIRIKL-----R-HKRVLLVIDD--VDEFDQLQALAGQRDWFGLGSRIIITTRDR 154 (987)
Q Consensus 83 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-----~-~k~~LlVlDd--v~~~~~~~~l~~~~~~~~~gs~IiiTtR~~ 154 (987)
++..++.++...... ...+....|.+.+ . +++.+||+-= -.+..-+..-.-.+.....-|.|++----+
T Consensus 325 lLr~LL~ALGV~p~~---~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evple 401 (550)
T PTZ00202 325 TLRSVVKALGVPNVE---ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHHHcCCCCcc---cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHh
Confidence 888888886542221 1123334444333 2 6677777653 233222211111111224467777644433
Q ss_pred ccccc---cCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 155 HLLVR---CDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 155 ~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
.+-.. ...-..|-++.++.++|.++-.+..
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 22111 1223589999999999988876543
No 97
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=1.1e-05 Score=88.98 Aligned_cols=198 Identities=16% Similarity=0.121 Sum_probs=115.1
Q ss_pred CCCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC----CCcceEEEEehHhhhhccCH
Q 001979 5 LLSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ----FDDGSSFLANVREVSQTRGL 80 (987)
Q Consensus 5 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~----f~~~~~~~~~~~~~~~~~~~ 80 (987)
.|.....++|.+...+.+...+..+. -...+.|+|+.|+||||+|+.++..+-.. +. ..... ...+-
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~-~~~~~-------~~~~~ 88 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEA-PETLA-------DPDPA 88 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccC-ccccC-------CCCCC
Confidence 46667889999999999999997642 33568899999999999999999976431 11 00000 00001
Q ss_pred HHHHHHHHHH-------HhcCCCc------ccccchhhHHHHHHHh-----cCCceEEEEeCCCCh--HHHHHHhcCCCC
Q 001979 81 VALQEQLVSE-------ILLDKNV------KIWDVHKGCHMIRIKL-----RHKRVLLVIDDVDEF--DQLQALAGQRDW 140 (987)
Q Consensus 81 ~~l~~~ll~~-------l~~~~~~------~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~ 140 (987)
....+.+... +....+. ..-..++ +..+.+.+ .+++-++|+|+++.. ...++++..+..
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE 167 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE 167 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc
Confidence 1111222111 0000000 0001111 22233333 245668999999764 345556555544
Q ss_pred CCCCcEEEEEe-CCccccccc-CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 141 FGLGSRIIITT-RDRHLLVRC-DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 141 ~~~gs~IiiTt-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
...+..+|++| +...+.... .....+++.+++.++..+++........ -..+....+++.++|.|.....+.
T Consensus 168 pp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 168 PPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34455555544 443443332 3346899999999999999987432111 113457789999999998665544
No 98
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.5e-05 Score=89.15 Aligned_cols=186 Identities=12% Similarity=0.058 Sum_probs=108.3
Q ss_pred CCCccccchhHHHHHHHhcCCCC--------CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCH
Q 001979 9 SEKLVGMDYRLEQIYLMLGTGLD--------EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGL 80 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~ 80 (987)
-++++|.+.-++.|.+++..+.+ -.+.+.++|+.|+||||+|+.++..+-.... . . . ..+.
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~-~--~-~-------~Cg~ 72 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDP-D--E-P-------GCGE 72 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCC-C--C-C-------CCCC
Confidence 46789999999999999976421 3467889999999999999999987532221 0 0 0 0000
Q ss_pred HHHHHHHHHHHhcCCCc-------ccccchhhHHHHHHHh-----cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcE
Q 001979 81 VALQEQLVSEILLDKNV-------KIWDVHKGCHMIRIKL-----RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSR 146 (987)
Q Consensus 81 ~~l~~~ll~~l~~~~~~-------~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 146 (987)
....+.+... ...+. .....++ +..+.+.. .+++-++|+|+++.. .....+...+....++..
T Consensus 73 C~~C~~~~~~--~hpD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~ 149 (394)
T PRK07940 73 CRACRTVLAG--THPDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTV 149 (394)
T ss_pred CHHHHHHhcC--CCCCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCe
Confidence 0000011000 00000 0000011 11111211 234557888999774 344556655544456777
Q ss_pred EEEEeCCc-ccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHH
Q 001979 147 IIITTRDR-HLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEIL 215 (987)
Q Consensus 147 IiiTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 215 (987)
+|++|.+. .+... ......+.+.+++.++..+.+.... .. ..+.+..++..++|.|.....+
T Consensus 150 fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 150 WLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---GV----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred EEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---CC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 77776664 33333 2345789999999999998887432 11 1355788999999999765444
No 99
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.29 E-value=2.3e-05 Score=79.26 Aligned_cols=89 Identities=18% Similarity=0.146 Sum_probs=62.4
Q ss_pred CCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-cccccc-CcCceEEcCCCCHHHHHHHHHHhhccCCCC
Q 001979 115 HKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDR-HLLVRC-DVEDTYMVEKLNYNEALHLFSWKAFRKGHP 190 (987)
Q Consensus 115 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 190 (987)
+.+-++|+||++.. +..+.+...+....+.+.+|++|++. .+.... .....+++.+++.++..+.+... + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 45668999999764 34666666665555677788777654 222221 23468999999999999998776 1 1
Q ss_pred CChHHHHHHHHHHHhCCCchh
Q 001979 191 TDGYFELSHSMVNYADGLPLA 211 (987)
Q Consensus 191 ~~~~~~~~~~i~~~~~G~PLa 211 (987)
..+.+..+++.++|.|..
T Consensus 170 ---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 ---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred ---CHHHHHHHHHHcCCCccc
Confidence 135688999999998853
No 100
>PF14516 AAA_35: AAA-like domain
Probab=98.29 E-value=0.00024 Score=78.35 Aligned_cols=209 Identities=14% Similarity=0.142 Sum_probs=120.5
Q ss_pred CCCCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhh-hccCHHH
Q 001979 4 TLLSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVS-QTRGLVA 82 (987)
Q Consensus 4 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~ 82 (987)
+.|......|.|...-+++.+.+.. ....+.|.|+-.+|||+|...+.+..+..-- .+++++.-.-.+ ...+...
T Consensus 5 ~~~~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~-~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 5 PLPLDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGY-RCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCCCCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCC-EEEEEEeecCCCcccCCHHH
Confidence 4456677888999555555555543 2358999999999999999999998765422 466665322111 1234454
Q ss_pred HHHHHHHHHhcCCCcc----------cccchhhHHHHHHHh-c--CCceEEEEeCCCChHH----HHHHhcCC-CCCC--
Q 001979 83 LQEQLVSEILLDKNVK----------IWDVHKGCHMIRIKL-R--HKRVLLVIDDVDEFDQ----LQALAGQR-DWFG-- 142 (987)
Q Consensus 83 l~~~ll~~l~~~~~~~----------~~~~~~~~~~l~~~L-~--~k~~LlVlDdv~~~~~----~~~l~~~~-~~~~-- 142 (987)
..+.+...+...-... ..........+.+.+ . .++++|+||+||..-. .+.+.+.+ .|..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 5555544443222111 111122233444432 2 5899999999975321 11221111 0100
Q ss_pred -----CCcEEEEEeCCc--ccc-cc----cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCch
Q 001979 143 -----LGSRIIITTRDR--HLL-VR----CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPL 210 (987)
Q Consensus 143 -----~gs~IiiTtR~~--~v~-~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 210 (987)
...-.+|...+. ... .. ..+...+++++++.+|..+|...+-.. -. ....++|...++|+|.
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPY 234 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHH
Confidence 111112222211 111 11 133457899999999999999876422 11 2338999999999999
Q ss_pred hHHHHhhhhcCC
Q 001979 211 ALEILGSFLFAR 222 (987)
Q Consensus 211 al~~l~~~L~~~ 222 (987)
-+..++..+...
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999988653
No 101
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=4.2e-05 Score=89.41 Aligned_cols=192 Identities=15% Similarity=0.111 Sum_probs=109.8
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
|..-+++||.+.-++.|..++..+ .-.+.+.++|+.|+||||+|+.++..+-.... ..+- ..+.....+
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~--~~~~--------pCg~C~~C~ 77 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQG--PTAT--------PCGVCESCV 77 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccC--CCCC--------cccccHHHH
Confidence 344578999999999999999753 22356789999999999999999987642111 0000 000000011
Q ss_pred HHHHH------H--hcC-CCcccccchhhHHHHHHH-hcCCceEEEEeCCCC--hHHHHHHhcCCCCCCCCcEEEEEeCC
Q 001979 86 QLVSE------I--LLD-KNVKIWDVHKGCHMIRIK-LRHKRVLLVIDDVDE--FDQLQALAGQRDWFGLGSRIIITTRD 153 (987)
Q Consensus 86 ~ll~~------l--~~~-~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTtR~ 153 (987)
.+... + ... ......+..+....+... ..+++-++|+|+++. ....++|+..+........+|++|.+
T Consensus 78 ~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte 157 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTE 157 (584)
T ss_pred HhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 11000 0 000 000000111111111110 124556889999976 34567777666655567776666544
Q ss_pred -cccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCch
Q 001979 154 -RHLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPL 210 (987)
Q Consensus 154 -~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 210 (987)
..+... ......+++..++.++..+.+...+-.....-+ .+....|++.++|.+-
T Consensus 158 ~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~--~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 158 PEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD--DAVYPLVIRAGGGSPR 214 (584)
T ss_pred hHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 333332 234578999999999999888776643332211 3567788899999774
No 102
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.5e-08 Score=102.47 Aligned_cols=178 Identities=21% Similarity=0.242 Sum_probs=80.8
Q ss_pred cceeecCCcCCc--ccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCccc--ccccCCCCCcEee
Q 001979 524 LLQLHLDQTSIE--EIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVP--ENLGHIASLENLD 599 (987)
Q Consensus 524 L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~ 599 (987)
|++|||+.+.|+ .+...+..+.+|+.|.|.++.....+-..+.+-.+|+.|+++.|+.+.+.. -.+.+++.|.+|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 444444444444 233334445555555555544444444445555566666666665544422 2345556666666
Q ss_pred CCCCCCCCCC--ccccC-CCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCC
Q 001979 600 LGGTAIRRPP--STIVL-LENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEG 676 (987)
Q Consensus 600 L~~~~i~~~p--~~i~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~ 676 (987)
|+.|...... ..+.+ -++|+.|+|+||...-.. .....-...+++|..|||++|.....
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~------------------sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK------------------SHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh------------------hHHHHHHHhCCceeeeccccccccCc
Confidence 6665443211 11111 235666666665421000 00000123455666666666643322
Q ss_pred CCccccCCCCCCCEEeCCCCCCc--ccchhhhccCCCcEEecCCC
Q 001979 677 AIPNDLGSLSALTNLTLSRNNFF--SLPASINQLSRLETLNIDYC 719 (987)
Q Consensus 677 ~lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c 719 (987)
..-..+..++.|++|.|+.|..- ..--.+...|+|.+|++.+|
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 22333445555555555555211 11112244455555555554
No 103
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.25 E-value=4e-05 Score=87.76 Aligned_cols=165 Identities=18% Similarity=0.164 Sum_probs=98.9
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCC-cceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFD-DGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIK 112 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 112 (987)
..+.|+|..|.|||+|++++++.+..... ..++++. ..++...+...+... ......+++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~--------~~~~~~~~~~ 203 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKT--------HKEIEQFKNE 203 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHh--------hhHHHHHHHH
Confidence 46889999999999999999997754332 1345554 122334444332110 0122334444
Q ss_pred hcCCceEEEEeCCCChH----HHHHHhcCCCC-CCCCcEEEEEeCCc-cccc--------ccCcCceEEcCCCCHHHHHH
Q 001979 113 LRHKRVLLVIDDVDEFD----QLQALAGQRDW-FGLGSRIIITTRDR-HLLV--------RCDVEDTYMVEKLNYNEALH 178 (987)
Q Consensus 113 L~~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTtR~~-~v~~--------~~~~~~~~~l~~L~~~ea~~ 178 (987)
++ +.-+|||||+.... ..+.+...++. ...|..||+|+... .... .+...-.+++++++.++..+
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 44 34478899995431 22333332221 13455788886643 1221 12344578899999999999
Q ss_pred HHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhh
Q 001979 179 LFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGS 217 (987)
Q Consensus 179 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~ 217 (987)
++.+.+-.......-..+....|++.++|.|-.+.-+..
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 999887432211122357888999999999987765543
No 104
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=5.3e-05 Score=88.18 Aligned_cols=196 Identities=14% Similarity=0.160 Sum_probs=113.4
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC-cceEEEEehHhhhhccCHHHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFD-DGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
...+++||.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-.... ... ..+.....+
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~-----------pCg~C~sC~ 80 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE-----------PCNTCEQCR 80 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC-----------CCcccHHHH
Confidence 34478899998888888888653 22467889999999999999999987632110 000 000000011
Q ss_pred HHHHHHhcCCCc-cc-----ccchhhHHHHHHH-----hcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeC
Q 001979 86 QLVSEILLDKNV-KI-----WDVHKGCHMIRIK-----LRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTR 152 (987)
Q Consensus 86 ~ll~~l~~~~~~-~~-----~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR 152 (987)
.+... ...+. .+ ...+ .+..+.+. ..+++-+||+|+++.. +..+.|...+........+|++|.
T Consensus 81 ~i~~g--~hpDv~eId~a~~~~Id-~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt 157 (624)
T PRK14959 81 KVTQG--MHVDVVEIDGASNRGID-DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATT 157 (624)
T ss_pred HHhcC--CCCceEEEecccccCHH-HHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecC
Confidence 11100 00000 00 0000 01112111 2356678999999764 456666666543345566666665
Q ss_pred Cc-ccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc-hhHHHHhhhh
Q 001979 153 DR-HLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP-LALEILGSFL 219 (987)
Q Consensus 153 ~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~l~~~L 219 (987)
+. .+... ......+++.+++.++..+.+...+...... -..+.++.|++.++|.+ .|+..+...+
T Consensus 158 ~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 158 EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 53 33322 2334678999999999999988766443322 12356888999999965 6776665443
No 105
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=3.4e-05 Score=93.78 Aligned_cols=189 Identities=13% Similarity=0.102 Sum_probs=109.7
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC--CcceEEEEehHhhhhccCHHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQF--DDGSSFLANVREVSQTRGLVALQ 84 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~ 84 (987)
...+++||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-... ....| +.....
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pC------------g~C~sC 78 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPC------------GECDSC 78 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCC------------cccHHH
Confidence 34578999999999999999753 2235678999999999999999998763211 10000 000000
Q ss_pred HHHHHHHhcCCCc--------ccccchhhHHHHHHH-----hcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEE
Q 001979 85 EQLVSEILLDKNV--------KIWDVHKGCHMIRIK-----LRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIII 149 (987)
Q Consensus 85 ~~ll~~l~~~~~~--------~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iii 149 (987)
+.+... ..... ....+++. ..+.+. ..+++-++|||+++.. ...+.|+..+......+.+|+
T Consensus 79 ~~~~~g--~~~~~dv~eidaas~~~Vd~i-R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl 155 (824)
T PRK07764 79 VALAPG--GPGSLDVTEIDAASHGGVDDA-RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIF 155 (824)
T ss_pred HHHHcC--CCCCCcEEEecccccCCHHHH-HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEE
Confidence 000000 00000 00001111 111111 2345557889999774 446666666655556777776
Q ss_pred EeCCc-ccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHH
Q 001979 150 TTRDR-HLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALE 213 (987)
Q Consensus 150 TtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 213 (987)
+|.+. .+... ......|++..++.++..+++.+.+-...... ..+....|++.++|.+..+.
T Consensus 156 ~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i--d~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 156 ATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV--EPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred EeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 66443 34433 23457899999999999988877653322221 23456788999999884443
No 106
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=4.8e-05 Score=86.25 Aligned_cols=199 Identities=15% Similarity=0.146 Sum_probs=111.6
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC--CCcceEEEEehHhhhhccCHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ--FDDGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l 83 (987)
|...++++|.+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+-.. .. ...|.... ....+....
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~-~~~~~~~~---~~~c~~c~~ 86 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMID-DADYLQEV---TEPCGECES 86 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcC-cccccccC---CCCCCCCHH
Confidence 344578999999999999988753 223558899999999999999999976331 11 01111000 000010011
Q ss_pred HHHHHHHHhcCCCc------ccccchhhHHHHHHHh-----cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEE
Q 001979 84 QEQLVSEILLDKNV------KIWDVHKGCHMIRIKL-----RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIIT 150 (987)
Q Consensus 84 ~~~ll~~l~~~~~~------~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiT 150 (987)
.+.+... ...+. .....++ +..+.+.+ .+++-++|+|+++.. ..++.+...+....+.+.+|++
T Consensus 87 c~~~~~~--~~~n~~~~~~~~~~~id~-Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~ 163 (397)
T PRK14955 87 CRDFDAG--TSLNISEFDAASNNSVDD-IRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFA 163 (397)
T ss_pred HHHHhcC--CCCCeEeecccccCCHHH-HHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 1111100 00000 0000111 11122222 245568899999764 4566666665544566776665
Q ss_pred eCC-ccccccc-CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHH
Q 001979 151 TRD-RHLLVRC-DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEI 214 (987)
Q Consensus 151 tR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 214 (987)
|.+ ..+.... .....+++++++.++..+.+...+-.... .-..+.+..+++.++|.+--+..
T Consensus 164 t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 164 TTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred eCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 543 3333321 22357899999999998888776532221 12246788999999998754433
No 107
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.5e-05 Score=92.93 Aligned_cols=193 Identities=15% Similarity=0.098 Sum_probs=109.0
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
|...+++||.+.-++.+..++..+ .-.+.+.++|+.|+||||+|+.+++.+-.... ... ...+......
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~--~~~--------~pcg~C~~C~ 80 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETG--VTA--------TPCGVCSACL 80 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCC--CCC--------CCCCCCHHHH
Confidence 345578999999999999998753 22356789999999999999999987632211 000 0000000000
Q ss_pred HHHHH----HhcCCCcccccchhhHHHHHHH-----hcCCceEEEEeCCCChH--HHHHHhcCCCCCCCCcEEEEEeCCc
Q 001979 86 QLVSE----ILLDKNVKIWDVHKGCHMIRIK-----LRHKRVLLVIDDVDEFD--QLQALAGQRDWFGLGSRIIITTRDR 154 (987)
Q Consensus 86 ~ll~~----l~~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTtR~~ 154 (987)
++... +..-........++. ..+.+. ..+++-++|+|+++... ..+++...+......+.+|++|.+.
T Consensus 81 ~i~~~~~~d~~ei~~~~~~~vd~i-r~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~ 159 (527)
T PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAM-RELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (527)
T ss_pred HHhcCCCCceeEeeccccCCHHHH-HHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCCh
Confidence 00000 000000000001111 111111 12456789999998743 4666666655445567777666554
Q ss_pred c-cccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhH
Q 001979 155 H-LLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLAL 212 (987)
Q Consensus 155 ~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 212 (987)
+ +... ......+++++++.++..+.+.+.+-..... ...+....|++.++|.+--+
T Consensus 160 ~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 160 QKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRDA 217 (527)
T ss_pred hhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 2 3222 1234688999999999998887765333222 12355688899999977533
No 108
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=5.3e-05 Score=89.10 Aligned_cols=195 Identities=18% Similarity=0.180 Sum_probs=113.7
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcc---eEEEEehHhhhhccCHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDG---SSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~---~~~~~~~~~~~~~~~~~~l 83 (987)
...+++||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-....+. ..+ . ..+...-
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~-~-------~cg~c~~ 91 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI-D-------LCGVGEH 91 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc-c-------cCcccHH
Confidence 34578999999999999988754 2345688999999999999999999764332100 000 0 0011111
Q ss_pred HHHHHHHHhcCCCc------ccccchhhHHHHHHHh-----cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEE
Q 001979 84 QEQLVSEILLDKNV------KIWDVHKGCHMIRIKL-----RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIIT 150 (987)
Q Consensus 84 ~~~ll~~l~~~~~~------~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiT 150 (987)
.+.+... ...+. .....++.. .+.+.+ .+++-++|+|+++.. ...+.+...+....+.+.+|++
T Consensus 92 C~~i~~g--~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~ 168 (598)
T PRK09111 92 CQAIMEG--RHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFA 168 (598)
T ss_pred HHHHhcC--CCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEE
Confidence 1111111 00000 000111111 111111 234557899999764 3466666665544567777665
Q ss_pred e-CCccccccc-CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHH
Q 001979 151 T-RDRHLLVRC-DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEIL 215 (987)
Q Consensus 151 t-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 215 (987)
| ....+.... .....+++..++.++..+.+...+-...... ..+....|++.++|.+.-+...
T Consensus 169 tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i--~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 169 TTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV--EDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 5 333333332 3446899999999999999988764333221 2356788999999988655433
No 109
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=2.1e-06 Score=103.00 Aligned_cols=86 Identities=34% Similarity=0.475 Sum_probs=43.8
Q ss_pred hhccccceeecCCcCCc-ccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCC-CCCc
Q 001979 519 QNAKRLLQLHLDQTSIE-EIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHI-ASLE 596 (987)
Q Consensus 519 ~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l-~~L~ 596 (987)
..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..++++++|+.|++++|.....+|..++.+ .++.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 34444444444444443 444445555555555555555555555555555555555555555555555554432 2444
Q ss_pred EeeCCCCC
Q 001979 597 NLDLGGTA 604 (987)
Q Consensus 597 ~L~L~~~~ 604 (987)
.+++.+|.
T Consensus 519 ~l~~~~N~ 526 (623)
T PLN03150 519 SFNFTDNA 526 (623)
T ss_pred eEEecCCc
Confidence 55555553
No 110
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.23 E-value=3.6e-08 Score=104.48 Aligned_cols=62 Identities=24% Similarity=0.387 Sum_probs=36.4
Q ss_pred CCCCEEecCCCCCCCCCCC---CCCCCcccEEeccCCcCCccc-cCc-cccCCCCcEEeCcCCCCCc
Q 001979 443 RHLKFIKLSHSVHLTKTPD---FTGVPKLERLVLDGCTNLSFV-HPS-IGLLKRLKVLNMKECIRIK 504 (987)
Q Consensus 443 ~~L~~L~Ls~~~~~~~~~~---~~~l~~L~~L~L~~~~~l~~~-~~~-i~~l~~L~~L~L~~c~~l~ 504 (987)
..||.|.|.++.-...-+- ...+||+++|.+.+|..++.. ..+ -..+++|++|+|..|..++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT 204 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT 204 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH
Confidence 3466666666654444332 456777777777777755531 112 2346777777777775444
No 111
>PLN03150 hypothetical protein; Provisional
Probab=98.21 E-value=2.5e-06 Score=102.30 Aligned_cols=105 Identities=28% Similarity=0.380 Sum_probs=91.9
Q ss_pred ccceeecCCcCCc-ccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCC
Q 001979 523 RLLQLHLDQTSIE-EIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLG 601 (987)
Q Consensus 523 ~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~ 601 (987)
.++.|+|+++.+. .+|..+..+++|+.|+|++|...+.+|..++.+++|+.|++++|.....+|+.++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888887 788899999999999999999999999999999999999999999888999999999999999999
Q ss_pred CCCCC-CCCccccCC-CCCcEEEccCCC
Q 001979 602 GTAIR-RPPSTIVLL-ENLKELSFHGCK 627 (987)
Q Consensus 602 ~~~i~-~~p~~i~~l-~~L~~L~L~~~~ 627 (987)
+|.+. .+|..+..+ .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 99988 567777653 466778887765
No 112
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=8.5e-05 Score=83.84 Aligned_cols=183 Identities=16% Similarity=0.195 Sum_probs=108.6
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC--------CCcceEEEEehHhhhhc
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ--------FDDGSSFLANVREVSQT 77 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--------f~~~~~~~~~~~~~~~~ 77 (987)
|..-++++|.+..++.+.+.+..+ .-.+.+.++|++|+||||+|+.+++.+... |.....-++ ....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~----~~~~ 87 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD----AASN 87 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec----cccC
Confidence 344578899999999999999753 234678899999999999999998876431 220111111 0011
Q ss_pred cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCC-c
Q 001979 78 RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRD-R 154 (987)
Q Consensus 78 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~-~ 154 (987)
.+...+ .+++.++.. .-..+++-+||+|+++.. ..++.+...+......+.+|++|.. .
T Consensus 88 ~~~~~i-~~l~~~~~~-----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~ 149 (367)
T PRK14970 88 NSVDDI-RNLIDQVRI-----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKH 149 (367)
T ss_pred CCHHHH-HHHHHHHhh-----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcc
Confidence 111111 122221100 001234557999999754 3456665444333345566655543 3
Q ss_pred ccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHH
Q 001979 155 HLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALE 213 (987)
Q Consensus 155 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 213 (987)
.+... ......+++++++.++....+...+......- ..+.++.+++.++|.+-.+.
T Consensus 150 kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i--~~~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 150 KIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF--EDDALHIIAQKADGALRDAL 207 (367)
T ss_pred cCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCHHHHH
Confidence 33322 23345799999999999998887775433221 23678888899999765443
No 113
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=2e-07 Score=106.77 Aligned_cols=125 Identities=20% Similarity=0.209 Sum_probs=58.6
Q ss_pred CCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCc
Q 001979 419 PERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMK 498 (987)
Q Consensus 419 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~ 498 (987)
+..+..+++..+.|.+.-..+..+++|..|++.+|.+......+..+++|++|++++|..... ..+..++.|+.|++.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc--cchhhccchhhheec
Confidence 344445555555555543444555666666666655443333355555555555555433222 223444445555555
Q ss_pred CCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCcc-ccCCCCCCEEeccCC
Q 001979 499 ECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPS-IKFLSRLTVLTLRDC 555 (987)
Q Consensus 499 ~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~ 555 (987)
+| .+..++. +..+.+|+.+++++|.+..+... ...+.+|+.+.+.+|
T Consensus 149 ~N-~i~~~~~---------~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 149 GN-LISDISG---------LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred cC-cchhccC---------CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 54 2222221 12344555555555555544432 244444444444443
No 114
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.18 E-value=2.4e-05 Score=86.48 Aligned_cols=150 Identities=15% Similarity=0.175 Sum_probs=88.3
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
|...++++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++..... ...++ .+. .....+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~----~~~i~----~~~-~~~~~i~- 85 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAE----VLFVN----GSD-CRIDFVR- 85 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCcc----ceEec----cCc-ccHHHHH-
Confidence 344578999999999999998753 234677779999999999999999876322 22333 111 1111111
Q ss_pred HHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh---HHHHHHhcCCCCCCCCcEEEEEeCCcccccc--c
Q 001979 86 QLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF---DQLQALAGQRDWFGLGSRIIITTRDRHLLVR--C 160 (987)
Q Consensus 86 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~--~ 160 (987)
+.+...... ..+.+.+-+||+||++.. +..+.+...+.....++++|+||........ .
T Consensus 86 ~~l~~~~~~----------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~ 149 (316)
T PHA02544 86 NRLTRFAST----------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR 149 (316)
T ss_pred HHHHHHHHh----------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH
Confidence 111111000 001134557889999765 2233333333334567889998875432111 1
Q ss_pred CcCceEEcCCCCHHHHHHHHHH
Q 001979 161 DVEDTYMVEKLNYNEALHLFSW 182 (987)
Q Consensus 161 ~~~~~~~l~~L~~~ea~~Lf~~ 182 (987)
.....+.++..+.++..+++..
T Consensus 150 sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 150 SRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hhceEEEeCCCCHHHHHHHHHH
Confidence 2334677878888888776654
No 115
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.15 E-value=3.4e-05 Score=79.47 Aligned_cols=188 Identities=17% Similarity=0.198 Sum_probs=118.4
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhh--cCCCcceEEEEehHhhhhccCHHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNIS--YQFDDGSSFLANVREVSQTRGLVALQ 84 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~~~~~~~~~~~~~~~l~ 84 (987)
...++++|.+..+..|...+.. ........+||+|.|||+-|++++.++- +-|+.+++=.. +|...++.-+.
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln----aSderGisvvr 106 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN----ASDERGISVVR 106 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc----ccccccccchh
Confidence 3457899999999999988875 4567788999999999999999998752 33542333222 23223322110
Q ss_pred HHH--HHHHhcCCCcccccchhhHHHHHHHh--cCCc-eEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCcccc
Q 001979 85 EQL--VSEILLDKNVKIWDVHKGCHMIRIKL--RHKR-VLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDRHLL 157 (987)
Q Consensus 85 ~~l--l~~l~~~~~~~~~~~~~~~~~l~~~L--~~k~-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~~v~ 157 (987)
..+ ..++.. ...+.. ..++ -.||||+++.. +.|.++......+...+|.|+.+..-...
T Consensus 107 ~Kik~fakl~~--------------~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsri 172 (346)
T KOG0989|consen 107 EKIKNFAKLTV--------------LLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRI 172 (346)
T ss_pred hhhcCHHHHhh--------------ccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhC
Confidence 000 111000 000000 0122 47899999874 56888888887777788876655543222
Q ss_pred c-c-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc-hhHHHHh
Q 001979 158 V-R-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP-LALEILG 216 (987)
Q Consensus 158 ~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~l~ 216 (987)
. . .....-|+.++|.+++..+-+...+-..+.+-+ .+..+.|++.++|-- -|+.++-
T Consensus 173 i~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 173 IRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred ChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcHHHHHHHHH
Confidence 2 1 133457899999999999988888866555433 367889999998853 3444443
No 116
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=5.8e-05 Score=89.81 Aligned_cols=197 Identities=15% Similarity=0.127 Sum_probs=113.4
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQ 86 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (987)
...+++||.+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+..... .. .....+.....+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~-~~--------~~~~c~~c~~c~~ 82 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTN-DP--------KGRPCGTCEMCRA 82 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCC-CC--------CCCCCccCHHHHH
Confidence 34578999999999999888753 23356789999999999999999987632211 00 0000111111112
Q ss_pred HHHHHhcC----CCcccccchhhHHHHHHHh-----cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-
Q 001979 87 LVSEILLD----KNVKIWDVHKGCHMIRIKL-----RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDR- 154 (987)
Q Consensus 87 ll~~l~~~----~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~- 154 (987)
+....... ........++ +..+.+.+ .+++-++|+|+++.. +..+.|...+......+.+|++|.+.
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 21110000 0000001111 11222222 245568999999764 45666666554444566777666543
Q ss_pred ccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 155 HLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 155 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
.+... ......++++.++.++..+.+...+....... ..+.+..+++.++|.+..+....
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i--~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL--EPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 23222 12345788999999999998887764433221 23568899999999886555443
No 117
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.14 E-value=8.1e-08 Score=101.92 Aligned_cols=139 Identities=19% Similarity=0.295 Sum_probs=74.3
Q ss_pred cCCCCCCCEEecCCCCCCCCCCC---CCCCCcccEEeccCCcCCccccC--ccccCCCCcEEeCcCCCCCccCCchhhhh
Q 001979 439 VQNMRHLKFIKLSHSVHLTKTPD---FTGVPKLERLVLDGCTNLSFVHP--SIGLLKRLKVLNMKECIRIKSFPAEIEWA 513 (987)
Q Consensus 439 ~~~l~~L~~L~Ls~~~~~~~~~~---~~~l~~L~~L~L~~~~~l~~~~~--~i~~l~~L~~L~L~~c~~l~~lp~~i~~~ 513 (987)
..+++++++|++.+|...+...- -..+++|++|+|..|..++...- -...+++|.+|++++|..+.. .++.
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~--~gv~-- 235 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG--NGVQ-- 235 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc--Ccch--
Confidence 45778888888888875544321 23477888888888877764321 234578888888888865544 1110
Q ss_pred hHHHhhhccccceeecCCcCCc---ccCccccCCCCCCEEeccCCCCCcccCc--cCCCCCCCCEEEecCCCCCC
Q 001979 514 SLEIVQNAKRLLQLHLDQTSIE---EIPPSIKFLSRLTVLTLRDCKKLVSLPS--SISDLRSLKVLNLNGCSKLE 583 (987)
Q Consensus 514 ~l~~~~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~l~~c~~l~ 583 (987)
.....++.++.+.+.+|.-. .+-..-.++..+..+++..|..+....- .-..+..|+.|..++|....
T Consensus 236 --~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~ 308 (483)
T KOG4341|consen 236 --ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT 308 (483)
T ss_pred --HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc
Confidence 11234444555555543211 1111123444455555555544332211 11234556666666665543
No 118
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.14 E-value=3.6e-05 Score=86.29 Aligned_cols=173 Identities=18% Similarity=0.206 Sum_probs=99.7
Q ss_pred CCCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc
Q 001979 9 SEKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT 77 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 77 (987)
-.++.|.+...+++.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .+. . +
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi----~i~--~--s-- 213 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI----RVV--G--S-- 213 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE----EEe--h--H--
Confidence 46788999999998876631 1124577899999999999999999997643332 121 0 0
Q ss_pred cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh------------H----HHHHHhcCCCC-
Q 001979 78 RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF------------D----QLQALAGQRDW- 140 (987)
Q Consensus 78 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~------------~----~~~~l~~~~~~- 140 (987)
. +.....+. ........+.......+.+|++|+++.. . .+..+...+..
T Consensus 214 ----~----l~~k~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 214 ----E----FVQKYLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred ----H----HHHHhcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 1 11110000 0001111222233467899999998642 0 12233332221
Q ss_pred -CCCCcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhhccCCCC-CChHHHHHHHHHHHhCCCc
Q 001979 141 -FGLGSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKAFRKGHP-TDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 141 -~~~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 209 (987)
...+..||.||.....+.. ...+..++++..+.++..++|..+..+.... .-+ ..++++.+.|.-
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 1245678888876544322 1345678999999999999998765332221 112 345566666654
No 119
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=9.2e-05 Score=84.85 Aligned_cols=196 Identities=16% Similarity=0.161 Sum_probs=107.7
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC---CcceEEEE-ehHhhhhccCHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQF---DDGSSFLA-NVREVSQTRGLVA 82 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f---~~~~~~~~-~~~~~~~~~~~~~ 82 (987)
..-+++||.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+-..- +...|-.. ..+.........
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d- 91 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD- 91 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-
Confidence 445789999999999999997532 236678999999999999999999763210 00000000 000000000000
Q ss_pred HHHHHHHHHhcCCCcccccchhhHHHHH-HHhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCC-ccccc
Q 001979 83 LQEQLVSEILLDKNVKIWDVHKGCHMIR-IKLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRD-RHLLV 158 (987)
Q Consensus 83 l~~~ll~~l~~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~-~~v~~ 158 (987)
++ .+-+.......+..+..+.+. ....+++-++|+|+++.. +..+.+...+........+|++|.+ ..+..
T Consensus 92 ----~~-~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~ 166 (451)
T PRK06305 92 ----VL-EIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPG 166 (451)
T ss_pred ----eE-EeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcch
Confidence 00 000000000000000000110 011255668899999754 3455666555444456667766643 33333
Q ss_pred c-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchh
Q 001979 159 R-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLA 211 (987)
Q Consensus 159 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 211 (987)
. ......+++++++.++..+.+...+-..... ...+.++.++++++|.+--
T Consensus 167 tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 167 TILSRCQKMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLRD 218 (451)
T ss_pred HHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 2 2345689999999999998888765433221 1235688899999997643
No 120
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=8.7e-05 Score=85.47 Aligned_cols=189 Identities=16% Similarity=0.163 Sum_probs=113.1
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhc-CCCc-ceEEEE-ehHh---------
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISY-QFDD-GSSFLA-NVRE--------- 73 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~-~f~~-~~~~~~-~~~~--------- 73 (987)
|..-+++||-+.-.+.+...+..+ .-.++..++|+.|+||||+|+.+++.+-. ...+ ..|... ..+.
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 344578999999999999998754 23356689999999999999999987521 1110 011100 0000
Q ss_pred ----hhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEE
Q 001979 74 ----VSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRI 147 (987)
Q Consensus 74 ----~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~I 147 (987)
.....++..+.. ++..... .-..+++-++|+|+++.. +..++++..+....+.+++
T Consensus 89 ~eldaas~~gId~IRe-lie~~~~-----------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~F 150 (535)
T PRK08451 89 IEMDAASNRGIDDIRE-LIEQTKY-----------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKF 150 (535)
T ss_pred EEeccccccCHHHHHH-HHHHHhh-----------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEE
Confidence 000011111111 1111000 001145568899999764 4566776666555667888
Q ss_pred EEEeCCcc-cccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHH
Q 001979 148 IITTRDRH-LLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEIL 215 (987)
Q Consensus 148 iiTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 215 (987)
|++|.+.. +... ......+++.+++.++..+.+...+-...... ..+.+..|++.++|.+.-+..+
T Consensus 151 IL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 151 ILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHH
Confidence 87777642 2221 23456899999999999998877664333221 2367889999999988554443
No 121
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.13 E-value=9.6e-06 Score=91.42 Aligned_cols=154 Identities=18% Similarity=0.236 Sum_probs=90.8
Q ss_pred CCCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc
Q 001979 9 SEKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT 77 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 77 (987)
..++.|.+.+++++.+.+.. +-...+-|.|+|++|.|||++|+++++.....|- .+. .+
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi----~V~----~s-- 251 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL----RVV----GS-- 251 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE----EEe----cc--
Confidence 35678999999999887742 1123456889999999999999999998654442 111 00
Q ss_pred cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH----------------HHHHHhcCCCCC
Q 001979 78 RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD----------------QLQALAGQRDWF 141 (987)
Q Consensus 78 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~ 141 (987)
.+..... +. ........+.....+.+.+|+||+++... .+..++..+..+
T Consensus 252 ----eL~~k~~----Ge------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 252 ----ELIQKYL----GD------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred ----hhhhhhc----ch------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 0111100 00 00011112222234567899999875321 122222222211
Q ss_pred --CCCcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhhcc
Q 001979 142 --GLGSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKAFR 186 (987)
Q Consensus 142 --~~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 186 (987)
..+.+||.||.....+.. ...+..++++..+.++..++|..++.+
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 235678888876543332 134568999999999999999987643
No 122
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=7e-05 Score=88.55 Aligned_cols=194 Identities=11% Similarity=0.124 Sum_probs=108.9
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
|..-+++||.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.++..+-..-. ...+-. +..+....+
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~-~~~~~p-C~~C~~~~~------ 84 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHK-TDLLEP-CQECIENVN------ 84 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhccccc-CCCCCc-hhHHHHhhc------
Confidence 334578999999999999999754 23466789999999999999999987532111 000000 000000000
Q ss_pred HHHHHHhcCCCcccccchhhHHHHHHHh-----cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeC-Ccccc
Q 001979 86 QLVSEILLDKNVKIWDVHKGCHMIRIKL-----RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTR-DRHLL 157 (987)
Q Consensus 86 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR-~~~v~ 157 (987)
. --.+...........++ +..+.+.. .+++-++|+|+++.. ..+.+++..+......+.+|++|. ...+.
T Consensus 85 ~-~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 85 N-SLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred C-CCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 0 00000000000000111 11222222 255668899999764 456777766554445566555554 34443
Q ss_pred cc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhH
Q 001979 158 VR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLAL 212 (987)
Q Consensus 158 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 212 (987)
.. ......+++.+++.++..+.+...+-...... ..+.++.+++.++|.+--+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i--d~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISY--EKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 32 23456899999999999988887653332211 1355788999999976433
No 123
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.12 E-value=0.00022 Score=81.59 Aligned_cols=158 Identities=19% Similarity=0.162 Sum_probs=92.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCC-cceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFD-DGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI 111 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 111 (987)
...+.|+|+.|+|||+||+++++.+..+.. ..++++. . .++..++...+... ....+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----~------~~~~~~~~~~~~~~----------~~~~~~~ 195 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----S------EKFTNDFVNALRNN----------KMEEFKE 195 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----H------HHHHHHHHHHHHcC----------CHHHHHH
Confidence 356889999999999999999998876543 1455554 1 12223333332211 1223344
Q ss_pred HhcCCceEEEEeCCCChH---H-HHHHhcCCCCC-CCCcEEEEEeCCc-ccc--------cccCcCceEEcCCCCHHHHH
Q 001979 112 KLRHKRVLLVIDDVDEFD---Q-LQALAGQRDWF-GLGSRIIITTRDR-HLL--------VRCDVEDTYMVEKLNYNEAL 177 (987)
Q Consensus 112 ~L~~k~~LlVlDdv~~~~---~-~~~l~~~~~~~-~~gs~IiiTtR~~-~v~--------~~~~~~~~~~l~~L~~~ea~ 177 (987)
.+++ .-+|||||++... . .+.+...+... ..|..+|+|+... ..+ ..+.....+++++.+.++..
T Consensus 196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 4433 3378899996421 1 12222222111 2355678877642 111 12223357899999999999
Q ss_pred HHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHH
Q 001979 178 HLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALE 213 (987)
Q Consensus 178 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 213 (987)
+++...+-.....- ..++...|++.+.|..-.+.
T Consensus 275 ~il~~~~~~~~~~l--~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 275 AILQKKAEEEGLEL--PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHH
Confidence 99998875433222 24677888888888765443
No 124
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=0.00041 Score=80.12 Aligned_cols=195 Identities=13% Similarity=0.093 Sum_probs=110.1
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC-c-ceEEE-EehHhhhhc--cCHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFD-D-GSSFL-ANVREVSQT--RGLV 81 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-~-~~~~~-~~~~~~~~~--~~~~ 81 (987)
....+++|.+.-++.+...+..+ .-.+...++|+.|+||||+|+.++..+-..-. . ..|=. .+....... .++.
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 34578999999999999999753 23356678999999999999999987632100 0 00000 000000000 0000
Q ss_pred HHHHHHHHHHhcCCCcccccchhhHHHHHHHh-----cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc
Q 001979 82 ALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL-----RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDR 154 (987)
Q Consensus 82 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~ 154 (987)
. +-...... . +....+.+.. .+++-++|+|+++.. ...+++...+....+...+|++|.+.
T Consensus 92 e--------idaas~~g---v-d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~ 159 (486)
T PRK14953 92 E--------IDAASNRG---I-DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEY 159 (486)
T ss_pred E--------EeCccCCC---H-HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCH
Confidence 0 00000000 0 0011222222 245669999999764 34566666555444566666655432
Q ss_pred -ccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 155 -HLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 155 -~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
.+... ......+++.+++.++..+.+...+-...... ..+.+..+++.++|.+..+....
T Consensus 160 ~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 160 DKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 23222 23346899999999999988887664333221 23567788899999876554443
No 125
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.11 E-value=2.2e-05 Score=83.84 Aligned_cols=153 Identities=15% Similarity=0.096 Sum_probs=83.3
Q ss_pred CCccccchhHHHHHHHhcC-------------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC--CcceEEEEehHhh
Q 001979 10 EKLVGMDYRLEQIYLMLGT-------------GLDEARILGICGMGGIGKTTLARFVFDNISYQF--DDGSSFLANVREV 74 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~-------------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~ 74 (987)
..+||.+...++|.+.... ..+....+.++|++|+||||+|+.+++.+...- . ...++. +
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~-~~~~v~----~ 80 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLS-KGHLIE----V 80 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCccc-CCceEE----e
Confidence 4588988777666543211 112446688999999999999999998753211 1 112222 1
Q ss_pred hhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhc-CCceEEEEeCCCC----------hHHHHHHhcCCCCCCC
Q 001979 75 SQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLR-HKRVLLVIDDVDE----------FDQLQALAGQRDWFGL 143 (987)
Q Consensus 75 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~----------~~~~~~l~~~~~~~~~ 143 (987)
.. .+ +.....+. ....+++.+. ...-+|++|+++. .+.++.+.........
T Consensus 81 ~~----~~----l~~~~~g~----------~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~ 142 (261)
T TIGR02881 81 ER----AD----LVGEYIGH----------TAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRN 142 (261)
T ss_pred cH----HH----hhhhhccc----------hHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCC
Confidence 10 11 11111110 0111222221 1234889999975 2345666655543333
Q ss_pred CcEEEEEeCCccccc------cc--CcCceEEcCCCCHHHHHHHHHHhhc
Q 001979 144 GSRIIITTRDRHLLV------RC--DVEDTYMVEKLNYNEALHLFSWKAF 185 (987)
Q Consensus 144 gs~IiiTtR~~~v~~------~~--~~~~~~~l~~L~~~ea~~Lf~~~a~ 185 (987)
...+|+++.....-. .. .....++++.++.+|..+++.+.+.
T Consensus 143 ~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 143 EFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 445556654432211 11 1235688999999999999987764
No 126
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.10 E-value=3.8e-05 Score=94.02 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=89.1
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-----CCcceEEEEehHhhhhccCHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ-----FDDGSSFLANVREVSQTRGLV 81 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~ 81 (987)
..-+.+|||+.+++++.+.|.... ..-+.++|++|+|||++|+.+++++... +.+..+|..+....
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l------- 249 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSL------- 249 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHH-------
Confidence 344689999999999999997642 2346699999999999999999986432 22234443211111
Q ss_pred HHHHHHHHHHhcCCCcccccchhhHHHHHHHh-cCCceEEEEeCCCChH----------HH-HHHhcCCCCCCCC-cEEE
Q 001979 82 ALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL-RHKRVLLVIDDVDEFD----------QL-QALAGQRDWFGLG-SRII 148 (987)
Q Consensus 82 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~----------~~-~~l~~~~~~~~~g-s~Ii 148 (987)
+.. .. ...+.++....+.+.+ ..++.+|++|+++..- +. +.+.+.+ ..| -++|
T Consensus 250 ------~a~----~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~I 315 (731)
T TIGR02639 250 ------LAG----TK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCI 315 (731)
T ss_pred ------hhh----cc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEE
Confidence 100 00 0012222222333333 3468899999986321 12 2233322 233 3445
Q ss_pred EEeCCccccc------c-cCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 149 ITTRDRHLLV------R-CDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 149 iTtR~~~v~~------~-~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
-+|..++... . ......++++.++.++..+++....
T Consensus 316 gaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred EecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 4444322111 1 1223578999999999999998654
No 127
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00016 Score=85.32 Aligned_cols=194 Identities=15% Similarity=0.137 Sum_probs=108.7
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC--CCcceEEEEehHhhhhccCHHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ--FDDGSSFLANVREVSQTRGLVALQ 84 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~ 84 (987)
...+++||.+.-++.+.+.+..+ .-...+.++|+.|+||||+|+.+++.+-.. .+ ...|...+. ...+.....
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~-~~~~~~~~~---~~Cg~C~sC 87 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMID-DPVYLQEVT---EPCGECESC 87 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCC-ccccccccC---CCCccCHHH
Confidence 34578999999999999988653 223568899999999999999999876321 11 111211000 011111111
Q ss_pred HHHHHHHhcCCCc------ccccchhhHHHHHHHh-----cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEe
Q 001979 85 EQLVSEILLDKNV------KIWDVHKGCHMIRIKL-----RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITT 151 (987)
Q Consensus 85 ~~ll~~l~~~~~~------~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTt 151 (987)
+.+... ...+. .....++.. .+.+.+ .+++-++|+|+++.. ...+.|...+..-.+.+.+|++|
T Consensus 88 ~~~~~g--~~~n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 88 RDFDAG--TSLNISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHhcc--CCCCeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 111110 00000 000011111 112222 244557899999764 34666666655444556665555
Q ss_pred CC-cccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCch
Q 001979 152 RD-RHLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPL 210 (987)
Q Consensus 152 R~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 210 (987)
.+ ..+... ......+++.+++.++....+...+-..... -..+.++.+++.++|..-
T Consensus 165 ~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~--I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 165 TELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ--IDADALQLIARKAQGSMR 223 (620)
T ss_pred CChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHH
Confidence 43 333332 2345789999999999888887665332211 123568889999999664
No 128
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.08 E-value=4.4e-05 Score=94.15 Aligned_cols=180 Identities=14% Similarity=0.055 Sum_probs=98.4
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC-----CcceEEEEehHhhhhccCHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQF-----DDGSSFLANVREVSQTRGLV 81 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~ 81 (987)
..-+.+|||+.++.++.+.|.... ..-+.++|++|+||||+|+.++.++.... .+..+|.........
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a----- 256 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA----- 256 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-----
Confidence 445789999999999999887643 23456999999999999999999874332 112233221111100
Q ss_pred HHHHHHHHHHhcCCCcccccchhhHHHHHHHh--cCCceEEEEeCCCChH---------HHH-HHhcCCCCCCCC-cEEE
Q 001979 82 ALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL--RHKRVLLVIDDVDEFD---------QLQ-ALAGQRDWFGLG-SRII 148 (987)
Q Consensus 82 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~~~---------~~~-~l~~~~~~~~~g-s~Ii 148 (987)
.... ..+.++....+.+.+ .+++++|++|++.... +.. .+.+.+ ..| -++|
T Consensus 257 ------------g~~~-~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---~~G~l~~I 320 (852)
T TIGR03345 257 ------------GASV-KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---ARGELRTI 320 (852)
T ss_pred ------------cccc-chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---hCCCeEEE
Confidence 0000 001111111222222 2478999999985431 111 233322 233 4556
Q ss_pred EEeCCcccccc-------cCcCceEEcCCCCHHHHHHHHHHhhccCC--CCCChHHHHHHHHHHHhCCCc
Q 001979 149 ITTRDRHLLVR-------CDVEDTYMVEKLNYNEALHLFSWKAFRKG--HPTDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 149 iTtR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~G~P 209 (987)
-||...+.... ......+++++++.+++.+++....-.-. ..-.-..+....+++.+.+..
T Consensus 321 gaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred EecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 56654322111 12336899999999999999754432111 111112345566666665543
No 129
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.06 E-value=0.00012 Score=83.84 Aligned_cols=159 Identities=19% Similarity=0.124 Sum_probs=94.2
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCc-ceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDD-GSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI 111 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 111 (987)
...+.|+|++|+|||+||+++++.+....++ .+.|++ . .++..++...+... ....+++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----~------~~f~~~~~~~~~~~----------~~~~f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----S------EKFLNDLVDSMKEG----------KLNEFRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----H------HHHHHHHHHHHhcc----------cHHHHHH
Confidence 3458899999999999999999987665432 455664 1 12333443332111 1123344
Q ss_pred HhcCCceEEEEeCCCCh---HHH-HHHhcCCCC-CCCCcEEEEEeC-Cccccc--------ccCcCceEEcCCCCHHHHH
Q 001979 112 KLRHKRVLLVIDDVDEF---DQL-QALAGQRDW-FGLGSRIIITTR-DRHLLV--------RCDVEDTYMVEKLNYNEAL 177 (987)
Q Consensus 112 ~L~~k~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IiiTtR-~~~v~~--------~~~~~~~~~l~~L~~~ea~ 177 (987)
..+.+.-+|++||++.. ... +.+...+.. ...|..||+||. ++.-+. .+.....+++++.+.++-.
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 44444568999999642 111 222222111 123557888875 332211 1233457899999999999
Q ss_pred HHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHH
Q 001979 178 HLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALE 213 (987)
Q Consensus 178 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 213 (987)
+++.+.+-.....- ..++...|++.+.|.--.+.
T Consensus 270 ~IL~~~~~~~~~~l--~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 270 KIARKMLEIEHGEL--PEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHHhcCCCC--CHHHHHHHHhccccCHHHHH
Confidence 99998874332222 24678888888888655444
No 130
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00047 Score=80.92 Aligned_cols=201 Identities=15% Similarity=0.093 Sum_probs=112.8
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC--CCcceEEE-EehHhhhhccCHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ--FDDGSSFL-ANVREVSQTRGLVA 82 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~-~~~~~~~~~~~~~~ 82 (987)
|..-+++||-+.-++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. .....|-. ...+.......+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d- 89 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD- 89 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-
Confidence 344578999999999999999753 234668899999999999999999975321 11000000 0000000000000
Q ss_pred HHHHHHHHHhcCCCcccccchhhHHHHHH-HhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-cccc
Q 001979 83 LQEQLVSEILLDKNVKIWDVHKGCHMIRI-KLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDR-HLLV 158 (987)
Q Consensus 83 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~-~v~~ 158 (987)
+. .+-+.......+..+..+.+.. -..+++-++|+|+++.. ..++++...+....+.+.+|++|.+. .+..
T Consensus 90 ----v~-~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 90 ----VI-EIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred ----eE-EecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 00 0000000000011011111110 11345668999999764 45777777666445566666666543 3322
Q ss_pred c-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHH
Q 001979 159 R-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEIL 215 (987)
Q Consensus 159 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 215 (987)
. ......+++.+++.++..+.+...+....... ..+.+..|++.++|.+-.+..+
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i--d~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY--EDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 23345789999999999988887764433222 2366788999999988544433
No 131
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.04 E-value=3.5e-05 Score=88.13 Aligned_cols=161 Identities=19% Similarity=0.233 Sum_probs=91.6
Q ss_pred CCCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC----cceEEEEehHh
Q 001979 9 SEKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFD----DGSSFLANVRE 73 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~----~~~~~~~~~~~ 73 (987)
-+++.|.+..++++.+.+.. +-...+-+.++|++|.|||++|+++++.+...+. ....|+. +
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v-- 257 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-I-- 257 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-c--
Confidence 36788899999999887531 1123466889999999999999999998765421 1344443 1
Q ss_pred hhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHH-hcCCceEEEEeCCCChH---------H-----HHHHhcCC
Q 001979 74 VSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIK-LRHKRVLLVIDDVDEFD---------Q-----LQALAGQR 138 (987)
Q Consensus 74 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~~---------~-----~~~l~~~~ 138 (987)
... +++....... ...........++. ..+++++|+||+++..- + +..+...+
T Consensus 258 -~~~--------eLl~kyvGet---e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 258 -KGP--------ELLNKYVGET---ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred -cch--------hhcccccchH---HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 100 0111000000 00000111112221 23578999999997421 1 23343333
Q ss_pred CCCC--CCcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 139 DWFG--LGSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 139 ~~~~--~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
.... .+..||.||.....+.. ...+..++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 2222 34455666655443322 1345679999999999999998876
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00062 Score=80.88 Aligned_cols=180 Identities=19% Similarity=0.218 Sum_probs=109.0
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC---c------------------ce
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFD---D------------------GS 65 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~---~------------------~~ 65 (987)
..-+++||.+...+.+...+..+ .-.+.+.++|+.|+||||+|+.++..+-.... + ..
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 34578999999999999998753 23366889999999999999999987632110 0 00
Q ss_pred EEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH-HhcCCceEEEEeCCCCh--HHHHHHhcCCCCCC
Q 001979 66 SFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI-KLRHKRVLLVIDDVDEF--DQLQALAGQRDWFG 142 (987)
Q Consensus 66 ~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~ 142 (987)
..++ .....++.++ ++++.+ +.. -..+++=++|+|+++.. ...++|...+....
T Consensus 93 ~~ld----~~~~~~vd~I-r~li~~------------------~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 93 HELD----AASNNSVDDI-RNLIEQ------------------VRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred EEec----ccccCCHHHH-HHHHHH------------------HhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 1111 0000111111 111111 000 01234557899999764 44666666655444
Q ss_pred CCcEEEEEe-CCcccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhH
Q 001979 143 LGSRIIITT-RDRHLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLAL 212 (987)
Q Consensus 143 ~gs~IiiTt-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 212 (987)
..+.+|++| +...+... ......+++++++.++....+...+-...... ..+.+..|++.++|..--+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i--~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA--EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 566666555 44444443 24457899999999999998887664433221 2356788999999976544
No 133
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00023 Score=84.42 Aligned_cols=198 Identities=17% Similarity=0.111 Sum_probs=111.7
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQ 86 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (987)
..-..++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.++..+-......... ...+.....+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~--------~~Cg~C~~C~~ 83 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP--------EPCGKCELCRA 83 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC--------CCCcccHHHHH
Confidence 344789999999999999987542 235678999999999999999999763321100000 01111111111
Q ss_pred HHHHHhcCCCcccc-cchhhHHHHHH---Hh-----cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-
Q 001979 87 LVSEILLDKNVKIW-DVHKGCHMIRI---KL-----RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDR- 154 (987)
Q Consensus 87 ll~~l~~~~~~~~~-~~~~~~~~l~~---~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~- 154 (987)
+..... ..-.... .....++.+++ .+ .+++-++|+|+++.. +..++++..+..-...+.+|++|.+.
T Consensus 84 i~~g~h-~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 84 IAAGNA-LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HhcCCC-ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 111100 0000000 00011112221 11 244568899999864 45667766655434455556555543
Q ss_pred ccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 155 HLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 155 ~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
.+... ......+++..++.++..+.+.+.+-.....- ..+.+..|++.++|.+..+..+.
T Consensus 163 ~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i--s~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 163 RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI--EPEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 33332 23456788999999998888877664332221 12567889999999886554443
No 134
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.03 E-value=0.0002 Score=72.83 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=41.1
Q ss_pred CCCCCCccccchhHHHHHHHhcC--CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGT--GLDEARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
+...+.++|.+.+.+.|.+-... ......-|.+||..|.|||++++++.+++..+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 34457899999999998753321 11234567789999999999999999986543
No 135
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.99 E-value=0.00015 Score=83.90 Aligned_cols=158 Identities=18% Similarity=0.142 Sum_probs=93.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCc-ceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDD-GSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI 111 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 111 (987)
...+.|+|++|+|||+||+++++++..++.. .+.|+.. ..+..++...+.. .....+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~----------~~~~~~~~~~~~~----------~~~~~~~~ 207 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS----------EKFTNDFVNALRN----------NTMEEFKE 207 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHHc----------CcHHHHHH
Confidence 3568899999999999999999998776531 3445541 1122233333211 01123444
Q ss_pred HhcCCceEEEEeCCCCh---H-HHHHHhcCCCC-CCCCcEEEEEeCCcc-c--------ccccCcCceEEcCCCCHHHHH
Q 001979 112 KLRHKRVLLVIDDVDEF---D-QLQALAGQRDW-FGLGSRIIITTRDRH-L--------LVRCDVEDTYMVEKLNYNEAL 177 (987)
Q Consensus 112 ~L~~k~~LlVlDdv~~~---~-~~~~l~~~~~~-~~~gs~IiiTtR~~~-v--------~~~~~~~~~~~l~~L~~~ea~ 177 (987)
.++ +.-+|||||++.. + ..+.+...+.. ...|..||+|+.... . ...+.....+++++.+.++..
T Consensus 208 ~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 208 KYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred HHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 444 3448899999542 1 12222222111 123556788776531 1 112233457999999999999
Q ss_pred HHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHH
Q 001979 178 HLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALE 213 (987)
Q Consensus 178 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 213 (987)
+++...+-..... -..++...|++.+.|..-.+.
T Consensus 287 ~il~~~~~~~~~~--l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 287 AILKKKAEEEGID--LPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHcCcCCCHHHHH
Confidence 9999887543222 223678888888888766443
No 136
>PRK06620 hypothetical protein; Validated
Probab=97.99 E-value=8.1e-05 Score=76.39 Aligned_cols=134 Identities=13% Similarity=0.049 Sum_probs=79.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL 113 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 113 (987)
+.+.|||++|+|||+||+++++... ..++.. .. . .. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~------~~~~~~---~~-~------~~-------------------------~~~ 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN------AYIIKD---IF-F------NE-------------------------EIL 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC------CEEcch---hh-h------ch-------------------------hHH
Confidence 5689999999999999999776532 122220 00 0 00 001
Q ss_pred cCCceEEEEeCCCChHH--HHHHhcCCCCCCCCcEEEEEeCCcccc-------cccCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 114 RHKRVLLVIDDVDEFDQ--LQALAGQRDWFGLGSRIIITTRDRHLL-------VRCDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 114 ~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~IiiTtR~~~v~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
+..-++++||++...+ +-.+..... ..|..||+|++..... ..+...-+++++++++++..+++.+.+
T Consensus 84 -~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 84 -EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred -hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 1234788999975432 222221111 3567899998854321 111233489999999999888887776
Q ss_pred ccCCCCCChHHHHHHHHHHHhCCCchhHH
Q 001979 185 FRKGHPTDGYFELSHSMVNYADGLPLALE 213 (987)
Q Consensus 185 ~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 213 (987)
...... -.+++.+.|++++.|.--.+.
T Consensus 161 ~~~~l~--l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 161 SISSVT--ISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred HHcCCC--CCHHHHHHHHHHccCCHHHHH
Confidence 432211 123667778887777654443
No 137
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.97 E-value=1.8e-07 Score=105.35 Aligned_cols=172 Identities=25% Similarity=0.290 Sum_probs=95.1
Q ss_pred hhcCCCCCcEEEecCcccCC--CCCcCCcccceEEecCC----------CCCCCCCCCCCCCceEEEcCCCCcccccccc
Q 001979 372 SFSRMKNLRLLKIRDVCLRH--GIEYLPDELRLLKWHGY----------PLRSLPSNFQPERLFKLNICYSLVEQLWQGV 439 (987)
Q Consensus 372 ~f~~~~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~~~~~----------~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~ 439 (987)
.+..++.||.|-+.++.+.. |+..+-..|..|-.++. .+..+...+....|...+.++|.+..+...+
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SL 183 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESL 183 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHH
Confidence 34567889999998877654 44444344444433221 1223333444455666666777766666666
Q ss_pred CCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccC-ccccCCCCcEEeCcCCCCCccCCchhhhhhHHHh
Q 001979 440 QNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHP-SIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIV 518 (987)
Q Consensus 440 ~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~ 518 (987)
+-++.|+.|||++|++...- .+..++.|++|||++|. +..+|. +...+. |+.|++++| .+ ..|..+
T Consensus 184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN-~l---------~tL~gi 250 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNN-AL---------TTLRGI 250 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeeccc-HH---------HhhhhH
Confidence 66677777777777654332 56666777777777643 333332 122222 666666665 22 222334
Q ss_pred hhccccceeecCCcCCcccCc--cccCCCCCCEEeccCCC
Q 001979 519 QNAKRLLQLHLDQTSIEEIPP--SIKFLSRLTVLTLRDCK 556 (987)
Q Consensus 519 ~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~ 556 (987)
.++++|+.||+++|-+..... -++.+..|+.|+|.+|.
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 566666666666665543221 14445556666666654
No 138
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.97 E-value=0.00013 Score=74.55 Aligned_cols=259 Identities=17% Similarity=0.195 Sum_probs=139.6
Q ss_pred CCCCCCccccchhHHHHHHHhcC---CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGT---GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVA 82 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 82 (987)
|..-.+|||.++-.+++.-.+.. .....-.|.++|++|.||||||.-+++++...+. +..-....+..++
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k-----~tsGp~leK~gDl-- 94 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK-----ITSGPALEKPGDL-- 94 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE-----ecccccccChhhH--
Confidence 44457899999988888766643 2234567889999999999999999998865554 1100000000111
Q ss_pred HHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH-HHHH-HhcCCCCC--------CCCcEE-----
Q 001979 83 LQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD-QLQA-LAGQRDWF--------GLGSRI----- 147 (987)
Q Consensus 83 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-~~~~-l~~~~~~~--------~~gs~I----- 147 (987)
..++.. |. +.=++.+|.+.... ..++ +.+...++ ++++|.
T Consensus 95 --aaiLt~----------------------Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 95 --AAILTN----------------------LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred --HHHHhc----------------------CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccC
Confidence 111111 22 22345567764421 1221 11222111 344443
Q ss_pred ------EEEeCCccccccc--CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhhh
Q 001979 148 ------IITTRDRHLLVRC--DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSFL 219 (987)
Q Consensus 148 ------iiTtR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L 219 (987)
=-|||...+...+ ...-+.+++..+.+|-.++..+.|..-... -..+-+.+|+++..|-|--..-+-...
T Consensus 150 ppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~--i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE--IDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred CCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC--CChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 3588865444332 123467889999999999999888433322 223668899999999995444333332
Q ss_pred cCCCHHHHHHHHHh--hhcCCCchHHHHHHHhHhCccHHHHHHHhheeeccCC--CCHHHHHHHHHhCCC-Cccccchhh
Q 001979 220 FARSKAEWKDALDR--LKYVPDQKIFEILKISYDGLQETEKKIFLDIACFFKG--KDKDQVRELLDSCDF-YPEIGISVL 294 (987)
Q Consensus 220 ~~~~~~~w~~~l~~--l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~--~~~~~l~~~~~~~~~-~~~~~~~~L 294 (987)
+ ++..+-.. +...........|.+-=.+|+..+++.+..+.-.+.| ...+.+...+..+.- +.+.+-=.|
T Consensus 228 R-----Dfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyL 302 (332)
T COG2255 228 R-----DFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYL 302 (332)
T ss_pred H-----HHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHH
Confidence 2 11111100 0000012234445555567788777777666655543 344555544433211 111222346
Q ss_pred hcccceEEe
Q 001979 295 IDKCIITLS 303 (987)
Q Consensus 295 ~~~~Li~~~ 303 (987)
++.++|+..
T Consensus 303 iq~gfi~RT 311 (332)
T COG2255 303 IQQGFIQRT 311 (332)
T ss_pred HHhchhhhC
Confidence 677776655
No 139
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.96 E-value=0.00012 Score=85.64 Aligned_cols=174 Identities=17% Similarity=0.198 Sum_probs=96.3
Q ss_pred CCCccccchhHHHHHHHhc---C-------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhcc
Q 001979 9 SEKLVGMDYRLEQIYLMLG---T-------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTR 78 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~---~-------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (987)
-++++|.+...+++.+++. . +....+-+.++|++|.|||++|++++......|- .++ .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~----~i~----~---- 121 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF----SIS----G---- 121 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCee----ecc----H----
Confidence 3678898887777665543 1 1122356889999999999999999987532221 111 0
Q ss_pred CHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH----------------HHHHHhcCCCCC-
Q 001979 79 GLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD----------------QLQALAGQRDWF- 141 (987)
Q Consensus 79 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 141 (987)
..+. ...... ........+.......+.+|+|||++... .+..+...+...
T Consensus 122 --~~~~----~~~~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 122 --SDFV----EMFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred --HHHH----HHHhcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 0111 110000 01111223333334567899999995521 123333333221
Q ss_pred -CCCcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc
Q 001979 142 -GLGSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 142 -~~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 209 (987)
..+-.||.||........ ...+..++++..+.++..+++..+.-......+ .....+++.+.|.-
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~---~~l~~la~~t~G~s 260 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD---VDLKAVARRTPGFS 260 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc---hhHHHHHHhCCCCC
Confidence 234456666665432221 235578999999999999999887643322211 22447777777743
No 140
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.96 E-value=0.00011 Score=87.67 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=40.6
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
|...+.++|++..++.+.+.+.. .....+.|+|++|+||||+|+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 34456799999999998887753 234579999999999999999998765
No 141
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.96 E-value=5.9e-05 Score=74.15 Aligned_cols=101 Identities=20% Similarity=0.292 Sum_probs=66.4
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhh-cCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNIS-YQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
..-.++||-++-++++.-.... ++.+-+.|.||+|+||||-+..+++++- ..+.+++.-+. .|...+++-+..
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN----ASdeRGIDvVRn 97 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN----ASDERGIDVVRN 97 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc----CccccccHHHHH
Confidence 3446889999999998777654 4667788999999999999999999753 33443444444 555566655544
Q ss_pred HHHHHHhcCCCcccccchhhHHHHHHHh-cCCceEEEEeCCCChH
Q 001979 86 QLVSEILLDKNVKIWDVHKGCHMIRIKL-RHKRVLLVIDDVDEFD 129 (987)
Q Consensus 86 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~ 129 (987)
++-.-.... . .+ .++--.||||++|+..
T Consensus 98 ~IK~FAQ~k--v--------------~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 98 KIKMFAQKK--V--------------TLPPGRHKIIILDEADSMT 126 (333)
T ss_pred HHHHHHHhh--c--------------cCCCCceeEEEeeccchhh
Confidence 443221000 0 01 1444589999998853
No 142
>CHL00176 ftsH cell division protein; Validated
Probab=97.95 E-value=0.00011 Score=87.09 Aligned_cols=172 Identities=17% Similarity=0.161 Sum_probs=99.3
Q ss_pred CCCccccchhHHHHHHHhcC---C-------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhcc
Q 001979 9 SEKLVGMDYRLEQIYLMLGT---G-------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTR 78 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~---~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (987)
.++++|.++..+++.+.+.. . ....+-|.++|++|.|||++|++++......|- .+. .+
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i----~is----~s--- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFF----SIS----GS--- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCee----ecc----HH---
Confidence 36788998888777766522 1 112356899999999999999999987532221 111 11
Q ss_pred CHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh----------------HHHHHHhcCCCCC-
Q 001979 79 GLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF----------------DQLQALAGQRDWF- 141 (987)
Q Consensus 79 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~- 141 (987)
.+..... .. ........+.......+.+|+|||++.. ..+..+......+
T Consensus 251 ---~f~~~~~----g~------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 251 ---EFVEMFV----GV------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred ---HHHHHhh----hh------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 0000000 00 0111222344445567899999999643 1234444333221
Q ss_pred -CCCcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCC
Q 001979 142 -GLGSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADG 207 (987)
Q Consensus 142 -~~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 207 (987)
..+..||.||........ ...+..+.++..+.++..++++.++-..... .......+++.+.|
T Consensus 318 ~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 318 GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 245566777766443321 1345788999999999999999887442211 12235567777776
No 143
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.94 E-value=8.8e-06 Score=65.09 Aligned_cols=58 Identities=31% Similarity=0.469 Sum_probs=33.3
Q ss_pred ccceeecCCcCCcccCc-cccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCC
Q 001979 523 RLLQLHLDQTSIEEIPP-SIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCS 580 (987)
Q Consensus 523 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~ 580 (987)
+|++|++++|.++.+|. .+..+++|++|++++|.....-|..|.++++|+.|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666666653 35556666666666555544444455666666666666553
No 144
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.93 E-value=5.5e-05 Score=93.82 Aligned_cols=154 Identities=15% Similarity=0.133 Sum_probs=86.8
Q ss_pred CCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-----CCcceEEEEehHhhhhccCHHHH
Q 001979 9 SEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ-----FDDGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l 83 (987)
-+.++||+++++++.+.|.... ..-+.++|++|+|||++|+.++.++... ..+..+|.-+....
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l--------- 246 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL--------- 246 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH---------
Confidence 3678999999999999997642 2345699999999999999999976432 22234443322111
Q ss_pred HHHHHHHHhcCCCcccccchhhHHHHHHH-hcCCceEEEEeCCCChH---------HHHHHhcCCCCCCCCcEEEEEeCC
Q 001979 84 QEQLVSEILLDKNVKIWDVHKGCHMIRIK-LRHKRVLLVIDDVDEFD---------QLQALAGQRDWFGLGSRIIITTRD 153 (987)
Q Consensus 84 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~gs~IiiTtR~ 153 (987)
..+.... .+.++....+.+. -..++++|++|+++... +...++.+... ...-++|.+|..
T Consensus 247 --------~ag~~~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg~l~~IgaTt~ 316 (821)
T CHL00095 247 --------LAGTKYR-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RGELQCIGATTL 316 (821)
T ss_pred --------hccCCCc-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CCCcEEEEeCCH
Confidence 1111100 1122222222222 23568999999985321 12222221111 122455555554
Q ss_pred ccccc------c-cCcCceEEcCCCCHHHHHHHHHHh
Q 001979 154 RHLLV------R-CDVEDTYMVEKLNYNEALHLFSWK 183 (987)
Q Consensus 154 ~~v~~------~-~~~~~~~~l~~L~~~ea~~Lf~~~ 183 (987)
.+... . ......++++..+.++..+++...
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 43211 1 123357889999999998887643
No 145
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.91 E-value=0.00018 Score=77.52 Aligned_cols=154 Identities=15% Similarity=0.103 Sum_probs=83.8
Q ss_pred CccccchhHHHHHHHhc---C-------C---CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC-cceEEEEehHhhhh
Q 001979 11 KLVGMDYRLEQIYLMLG---T-------G---LDEARILGICGMGGIGKTTLARFVFDNISYQFD-DGSSFLANVREVSQ 76 (987)
Q Consensus 11 ~~vGr~~~~~~l~~~L~---~-------~---~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~ 76 (987)
.++|.+...+++.++.. . + .....-+.++|++|+||||+|+.++..+...-. ....|+. ++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~~ 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VTR 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ecH
Confidence 57888877777655321 1 1 012235889999999999999999886543211 0112332 110
Q ss_pred ccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh-----------HHHHHHhcCCCCCCCCc
Q 001979 77 TRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF-----------DQLQALAGQRDWFGLGS 145 (987)
Q Consensus 77 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs 145 (987)
. ++...+.+.. .......+++ . ..-+|+||+++.. +..+.+...+.....+.
T Consensus 99 ----~----~l~~~~~g~~------~~~~~~~~~~-a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~ 161 (284)
T TIGR02880 99 ----D----DLVGQYIGHT------APKTKEILKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDL 161 (284)
T ss_pred ----H----HHhHhhcccc------hHHHHHHHHH-c--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCE
Confidence 1 1222211111 0111112222 1 3358889999632 23445555444444566
Q ss_pred EEEEEeCCccccccc--------CcCceEEcCCCCHHHHHHHHHHhhc
Q 001979 146 RIIITTRDRHLLVRC--------DVEDTYMVEKLNYNEALHLFSWKAF 185 (987)
Q Consensus 146 ~IiiTtR~~~v~~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a~ 185 (987)
+||.++.....-... .....+++++++.+|..+++...+-
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 777766543221111 1245799999999999999987763
No 146
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.91 E-value=2e-05 Score=85.55 Aligned_cols=94 Identities=13% Similarity=0.102 Sum_probs=60.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhc-CCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccc-----hhh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISY-QFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDV-----HKG 105 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-----~~~ 105 (987)
..+..+|+|++|+||||||+++|+.+.. +|+ ..+|+..+++- ...+.++++++...+........... ...
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFD-v~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPE-VHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCC-eEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 4467889999999999999999998755 687 88999855542 23677777777643322221111111 111
Q ss_pred HHHHHHH-hcCCceEEEEeCCCCh
Q 001979 106 CHMIRIK-LRHKRVLLVIDDVDEF 128 (987)
Q Consensus 106 ~~~l~~~-L~~k~~LlVlDdv~~~ 128 (987)
.+..+.. -.+++++|++|++...
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHH
Confidence 2222222 3579999999999554
No 147
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00046 Score=81.30 Aligned_cols=193 Identities=15% Similarity=0.133 Sum_probs=110.3
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
|...+++||.+..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+-..-... ....+.....+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~----------~~pC~~C~~C~ 80 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD----------GEPCNECEICK 80 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC----------CCCCCccHHHH
Confidence 4455889999999999999997642 346677899999999999999998753211000 00000001111
Q ss_pred HHHHHHhcCCCc-ccc-cchhhHH---HHHHHh-----cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCC
Q 001979 86 QLVSEILLDKNV-KIW-DVHKGCH---MIRIKL-----RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRD 153 (987)
Q Consensus 86 ~ll~~l~~~~~~-~~~-~~~~~~~---~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~ 153 (987)
.+... ...+. ... ......+ .+.+.. .+++-++|+|+++.. ..+.++...+..-.....+|++|..
T Consensus 81 ~i~~g--~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~ 158 (559)
T PRK05563 81 AITNG--SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTE 158 (559)
T ss_pred HHhcC--CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 11100 00000 000 0001111 222221 345668899999864 4577777665543445555555543
Q ss_pred c-ccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHH
Q 001979 154 R-HLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALE 213 (987)
Q Consensus 154 ~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 213 (987)
. .+... ......+++.+++.++..+.+...+-......+ .+.+..|++.++|.+..+.
T Consensus 159 ~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~--~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 159 PHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE--DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred hhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 3 33322 234467899999999999988877643332222 3567788889988775443
No 148
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.88 E-value=0.00037 Score=74.11 Aligned_cols=168 Identities=16% Similarity=0.228 Sum_probs=101.4
Q ss_pred CCCCccccchhHHHHHHHhcCCCCC-eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHH
Q 001979 8 ASEKLVGMDYRLEQIYLMLGTGLDE-ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQ 86 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~~~~~-~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (987)
..+.+.+|+.+++.+..++...+.. ...|.|+|-+|.|||.+.+++.+.... ..+|+. +-+......+..+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~----~~vw~n----~~ecft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL----ENVWLN----CVECFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC----cceeee----hHHhccHHHHHHH
Confidence 4577889999999999999775543 355699999999999999999997622 456887 4445566667777
Q ss_pred HHHHHh-cCCCccc-----ccchhhHHHHHH--Hhc--CCceEEEEeCCCChHHH-----HHHhcCCCCCCCCcEEEEEe
Q 001979 87 LVSEIL-LDKNVKI-----WDVHKGCHMIRI--KLR--HKRVLLVIDDVDEFDQL-----QALAGQRDWFGLGSRIIITT 151 (987)
Q Consensus 87 ll~~l~-~~~~~~~-----~~~~~~~~~l~~--~L~--~k~~LlVlDdv~~~~~~-----~~l~~~~~~~~~gs~IiiTt 151 (987)
++.+.. ...+... ....+....+++ ... ++.++||||+++...+. ..+.....-......+|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 777653 1111111 111122223332 112 46899999999876542 22222111112223344444
Q ss_pred CCcc---cccccCcC--ceEEcCCCCHHHHHHHHHHh
Q 001979 152 RDRH---LLVRCDVE--DTYMVEKLNYNEALHLFSWK 183 (987)
Q Consensus 152 R~~~---v~~~~~~~--~~~~l~~L~~~ea~~Lf~~~ 183 (987)
-... ....+|.. .++..+.-+.+|..+++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3321 12112322 35678899999999999654
No 149
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.00024 Score=82.47 Aligned_cols=156 Identities=14% Similarity=0.141 Sum_probs=91.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCc-ceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDD-GSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIK 112 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 112 (987)
..+.|+|..|.|||.|++++++.+...+.+ .+.|+. ..++..++...+.. .....+++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~----------~~~~~f~~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRD----------GKGDSFRRR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHh----------ccHHHHHHH
Confidence 358899999999999999999987654431 345654 12222333333211 012234444
Q ss_pred hcCCceEEEEeCCCCh---HHH-HHHhcCCCC-CCCCcEEEEEeCCc---------ccccccCcCceEEcCCCCHHHHHH
Q 001979 113 LRHKRVLLVIDDVDEF---DQL-QALAGQRDW-FGLGSRIIITTRDR---------HLLVRCDVEDTYMVEKLNYNEALH 178 (987)
Q Consensus 113 L~~k~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IiiTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 178 (987)
+++ -=+|||||++.. +.+ +.+...++. ...|..|||||+.. .+...+...-+++++..+.+...+
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 443 347888999543 221 222222211 13466788888753 112223445689999999999999
Q ss_pred HHHHhhccCCCCCChHHHHHHHHHHHhCCCchhH
Q 001979 179 LFSWKAFRKGHPTDGYFELSHSMVNYADGLPLAL 212 (987)
Q Consensus 179 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 212 (987)
++..++....... -.++++-|++.+.+..-.|
T Consensus 454 IL~kka~~r~l~l--~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 454 ILRKKAVQEQLNA--PPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHHhcCCCC--CHHHHHHHHHhccCCHHHH
Confidence 9998875443322 2466777777776654333
No 150
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.88 E-value=1.5e-05 Score=83.13 Aligned_cols=94 Identities=14% Similarity=0.086 Sum_probs=59.5
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhc-CCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccc-----cchhh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISY-QFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIW-----DVHKG 105 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~-----~~~~~ 105 (987)
..+.++|.|++|+|||||++.+++.+.. +|+ ..+|+..+.+- ..++.++++++...+......... -....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fd-v~~~v~vI~er--~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPE-VYLIVLLIDER--PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCC-eEEEEEEccCC--CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 4468899999999999999999998754 577 88888643321 257788888874333222111110 01112
Q ss_pred HHHHHHH-hcCCceEEEEeCCCCh
Q 001979 106 CHMIRIK-LRHKRVLLVIDDVDEF 128 (987)
Q Consensus 106 ~~~l~~~-L~~k~~LlVlDdv~~~ 128 (987)
....+.. -.++++++++|++...
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHh
Confidence 2222222 2479999999998553
No 151
>CHL00181 cbbX CbbX; Provisional
Probab=97.88 E-value=0.00025 Score=76.20 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=85.9
Q ss_pred CCccccchhHHHHHHHhc---C-------C---CCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-CCcceEEEEehHhhh
Q 001979 10 EKLVGMDYRLEQIYLMLG---T-------G---LDEARILGICGMGGIGKTTLARFVFDNISYQ-FDDGSSFLANVREVS 75 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~---~-------~---~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~ 75 (987)
+.++|.+...++|.++.. . + ......+.++|++|+||||+|+.+++..... +-...-|+. ++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~ 98 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT 98 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec
Confidence 368888777776655431 0 1 1123457899999999999999998865321 110111332 11
Q ss_pred hccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh-----------HHHHHHhcCCCCCCCC
Q 001979 76 QTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF-----------DQLQALAGQRDWFGLG 144 (987)
Q Consensus 76 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~g 144 (987)
.. .+.....+.. .......+.. . ..-+|+||+++.. +..+.+.........+
T Consensus 99 ----~~----~l~~~~~g~~------~~~~~~~l~~-a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~ 161 (287)
T CHL00181 99 ----RD----DLVGQYIGHT------APKTKEVLKK-A--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDD 161 (287)
T ss_pred ----HH----HHHHHHhccc------hHHHHHHHHH-c--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCC
Confidence 11 1222211111 0111112222 1 2348899999642 3345555544444455
Q ss_pred cEEEEEeCCcccccc--------cCcCceEEcCCCCHHHHHHHHHHhhcc
Q 001979 145 SRIIITTRDRHLLVR--------CDVEDTYMVEKLNYNEALHLFSWKAFR 186 (987)
Q Consensus 145 s~IiiTtR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 186 (987)
.+||+++....+... -.....+++++++.+|..+++...+-.
T Consensus 162 ~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 162 LVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 677777654332111 123468999999999999999887743
No 152
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.86 E-value=2.6e-06 Score=97.66 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=16.3
Q ss_pred CCEEeCCCCCCcccchhhhccCCCcEEecCC
Q 001979 688 LTNLTLSRNNFFSLPASINQLSRLETLNIDY 718 (987)
Q Consensus 688 L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~ 718 (987)
|+.+++++|.+..++..+..+..+..|++.+
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhh
Confidence 5555555555555444445555555555554
No 153
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00084 Score=73.10 Aligned_cols=194 Identities=15% Similarity=0.114 Sum_probs=109.6
Q ss_pred CCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC---------------CCcceEEEEehHhh
Q 001979 10 EKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ---------------FDDGSSFLANVREV 74 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~---------------f~~~~~~~~~~~~~ 74 (987)
++++|.+...+.+.+.+..+ .-.+...++|+.|+||+++|.+++..+-.. ++ ...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP-Dl~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP-DLLWVEPTYQH 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC-CEEEEeccccc
Confidence 57899999999999999764 223788999999999999999999875221 12 12333211000
Q ss_pred hhccCHHHHHHHHHHHHhcCCCc-ccccchhhHHHHHHHhc-----CCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcE
Q 001979 75 SQTRGLVALQEQLVSEILLDKNV-KIWDVHKGCHMIRIKLR-----HKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSR 146 (987)
Q Consensus 75 ~~~~~~~~l~~~ll~~l~~~~~~-~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 146 (987)
..... ....+......... ..-.. +.+..+.+.+. +++=++|+|+++.. ....+++..+..-. .+.
T Consensus 82 -~g~~~---~~~~~~~~~~~~~~~~~I~i-d~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 82 -QGKLI---TASEAEEAGLKRKAPPQIRL-EQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred -ccccc---chhhhhhccccccccccCcH-HHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 00000 00000000000000 00001 11223333332 45668899999764 34556665554334 445
Q ss_pred EEEEeC-Cccccccc-CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 147 IIITTR-DRHLLVRC-DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 147 IiiTtR-~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
+|++|. ...+.... .....+++++++.++..+.+....... . .......++..++|.|..+..+.
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~---~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--I---LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--c---chhHHHHHHHHcCCCHHHHHHHH
Confidence 555554 44444432 455789999999999999998764211 1 11124688999999997665443
No 154
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.86 E-value=0.0002 Score=81.73 Aligned_cols=152 Identities=16% Similarity=0.092 Sum_probs=87.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL 113 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 113 (987)
..+.|+|+.|+|||+||+++++.+..... .+.++. . ..+...+...+... ....++...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~-~v~yi~----~------~~f~~~~~~~l~~~----------~~~~f~~~~ 200 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGG-KILYVR----S------ELFTEHLVSAIRSG----------EMQRFRQFY 200 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEEee----H------HHHHHHHHHHHhcc----------hHHHHHHHc
Confidence 56889999999999999999998765433 566665 1 12223333332110 112344444
Q ss_pred cCCceEEEEeCCCChH----HHHHHhcCCCC-CCCCcEEEEEeCCc-cc--------ccccCcCceEEcCCCCHHHHHHH
Q 001979 114 RHKRVLLVIDDVDEFD----QLQALAGQRDW-FGLGSRIIITTRDR-HL--------LVRCDVEDTYMVEKLNYNEALHL 179 (987)
Q Consensus 114 ~~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTtR~~-~v--------~~~~~~~~~~~l~~L~~~ea~~L 179 (987)
+ +.-+|++||+.... ..+.+...++. ...|..||+||... .. ...+.....+++++++.++..++
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 34478889985431 11222222111 12356788888542 11 11223346889999999999999
Q ss_pred HHHhhccCCCCCChHHHHHHHHHHHhCCCc
Q 001979 180 FSWKAFRKGHPTDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 180 f~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 209 (987)
+.+.+-.....- ..++...|++.+.|.-
T Consensus 280 L~~k~~~~~~~l--~~evl~~la~~~~~di 307 (445)
T PRK12422 280 LERKAEALSIRI--EETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHcCCCC--CHHHHHHHHHhcCCCH
Confidence 988874432221 1355666666666543
No 155
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=8.8e-06 Score=82.78 Aligned_cols=208 Identities=19% Similarity=0.183 Sum_probs=126.7
Q ss_pred hhccccceeecCCcCCc---ccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCC-CcccccccCCCC
Q 001979 519 QNAKRLLQLHLDQTSIE---EIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKL-EEVPENLGHIAS 594 (987)
Q Consensus 519 ~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~ 594 (987)
...+.++.|+|.+|.|. ++-.-+.++|.|+.|+|+.|.....+-.--..+.+|++|-|.|.... ......+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45677888888888876 34444678888888888877654432211124568888888775432 223344566777
Q ss_pred CcEeeCCCCCCCCCC---ccccC-CCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCC
Q 001979 595 LENLDLGGTAIRRPP---STIVL-LENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGD 670 (987)
Q Consensus 595 L~~L~L~~~~i~~~p---~~i~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 670 (987)
+++|.++.|+...+- ..+.. -+.+++|...+|.... |.+. ..-..-++++..+-+..
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~--w~~~-----------------~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL--WLNK-----------------NKLSRIFPNVNSVFVCE 208 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH--HHHH-----------------HhHHhhcccchheeeec
Confidence 888888877655431 11111 1244555555543110 0000 00012356778888888
Q ss_pred CCCCCCCCccccCCCCCCCEEeCCCCCCcccc--hhhhccCCCcEEecCCCcccccCCCCccccccccccccccccccc
Q 001979 671 CNLQEGAIPNDLGSLSALTNLTLSRNNFFSLP--ASINQLSRLETLNIDYCNRLKALPELPASIDGLFAHNCTSLIKLC 747 (987)
Q Consensus 671 ~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~C~~L~~l~ 747 (987)
|.+.+..--.....++.+..|+|+.|++.++. ..+..++.|..|.+.+++....+..- --+.|.+...++++.+.
T Consensus 209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~--err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGG--ERRFLLIARLTKVQVLN 285 (418)
T ss_pred CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCC--cceEEEEeeccceEEec
Confidence 87765545556777888999999999998665 36788999999999998866655431 11233444555555553
No 156
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.00029 Score=76.80 Aligned_cols=174 Identities=17% Similarity=0.215 Sum_probs=105.4
Q ss_pred CCCCCccccchhHHHHHHHhcC--CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCc-ceEEEEehHhhhhccCHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGT--GLDEARILGICGMGGIGKTTLARFVFDNISYQFDD-GSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l 83 (987)
..+..++||+.++..+.+++.. ..+..+-+.|.|-+|.|||.+...++.+....... ..+++.+.. -....++
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~s----l~~~~ai 222 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTS----LTEASAI 222 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecc----ccchHHH
Confidence 4568899999999999998864 23456788999999999999999999987655441 346666332 1234455
Q ss_pred HHHHHHHHhcCCCcccccchhhHHHHHHHhcC--CceEEEEeCCCChHH--HHHHhcCCCCC-CCCcEEEEEeCC-----
Q 001979 84 QEQLVSEILLDKNVKIWDVHKGCHMIRIKLRH--KRVLLVIDDVDEFDQ--LQALAGQRDWF-GLGSRIIITTRD----- 153 (987)
Q Consensus 84 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~--k~~LlVlDdv~~~~~--~~~l~~~~~~~-~~gs~IiiTtR~----- 153 (987)
...+...+.........+ .+....+.....+ ..+|+|+|++|.... -..+...+.|- -+++|+|+.---
T Consensus 223 F~kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 666666653332222211 2223344444433 358999999977542 11222222222 256666543211
Q ss_pred -cccccccC-----cCceEEcCCCCHHHHHHHHHHhhc
Q 001979 154 -RHLLVRCD-----VEDTYMVEKLNYNEALHLFSWKAF 185 (987)
Q Consensus 154 -~~v~~~~~-----~~~~~~l~~L~~~ea~~Lf~~~a~ 185 (987)
.+.+..+. ....+..++.+.++..+++..+.-
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 01111111 235778889999999999998863
No 157
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.83 E-value=0.00017 Score=89.45 Aligned_cols=156 Identities=11% Similarity=0.091 Sum_probs=87.0
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC-----CcceEEEEehHhhhhccCHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQF-----DDGSSFLANVREVSQTRGLV 81 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~ 81 (987)
..-+.+|||+.++.++.+.|.... ..-+.++|++|+||||+|+.++.++.... .+..+|..........
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag---- 248 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG---- 248 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhc----
Confidence 445789999999999999997643 23466899999999999999999864321 1133332211111000
Q ss_pred HHHHHHHHHHhcCCCcccccchhhHHHHHHHh--cCCceEEEEeCCCChH---------HHHHHhcCCCCCCCC-cEEEE
Q 001979 82 ALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL--RHKRVLLVIDDVDEFD---------QLQALAGQRDWFGLG-SRIII 149 (987)
Q Consensus 82 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~g-s~Iii 149 (987)
.... .+.++....+.+.+ .+++++|++|+++... +...++.+.. ..| -++|-
T Consensus 249 -------------~~~~-g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~Ig 312 (857)
T PRK10865 249 -------------AKYR-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVG 312 (857)
T ss_pred -------------cchh-hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEE
Confidence 0000 01112222222222 2578999999986532 1233332222 233 44555
Q ss_pred EeCCccccc------c-cCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 150 TTRDRHLLV------R-CDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 150 TtR~~~v~~------~-~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
||...+... . ......+.+...+.++..+++....
T Consensus 313 aTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred cCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 544433211 0 1222467788889999999886554
No 158
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00029 Score=74.32 Aligned_cols=172 Identities=17% Similarity=0.248 Sum_probs=106.5
Q ss_pred CCCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc
Q 001979 9 SEKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT 77 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 77 (987)
.+++=|-+.++++|.+.... +-+..+-|.++|++|.|||-||++|+++. ...|+..+.
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T------~AtFIrvvg----- 218 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT------DATFIRVVG----- 218 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc------CceEEEecc-----
Confidence 46677899999999887632 11345778899999999999999999985 344554221
Q ss_pred cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhc-CCceEEEEeCCCChH----------------HHHHHhcCCCC
Q 001979 78 RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLR-HKRVLLVIDDVDEFD----------------QLQALAGQRDW 140 (987)
Q Consensus 78 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~~----------------~~~~l~~~~~~ 140 (987)
. ++.+...++ -......+.+.-+ +.+..|.+|.+|... .+-+|+..+.-
T Consensus 219 ---S----ElVqKYiGE-------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 219 ---S----ELVQKYIGE-------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred ---H----HHHHHHhcc-------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 1 222222211 1122222223223 567999999985421 13344444444
Q ss_pred CC--CCcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhhccCCCCC-ChHHHHHHHHHHHhCCCc
Q 001979 141 FG--LGSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPT-DGYFELSHSMVNYADGLP 209 (987)
Q Consensus 141 ~~--~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~G~P 209 (987)
|. ..-+||..|....++.. -..+..++++.-+.+.-.++|.-|+.+-+... -+ .+.+++.+.|.-
T Consensus 285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~s 357 (406)
T COG1222 285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFS 357 (406)
T ss_pred CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCc
Confidence 43 35688887766554432 34678899998888888999998875444332 23 345666666654
No 159
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00036 Score=82.62 Aligned_cols=191 Identities=16% Similarity=0.189 Sum_probs=108.5
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC--CCcceEEEEehHhhhhccCHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ--FDDGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l 83 (987)
|...+++||.+.-.+.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. .....|- ....
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~------------~c~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN------------VCPP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC------------ccHH
Confidence 345578999999999999988753 223567899999999999999999875321 1100000 0000
Q ss_pred HHHHHHH-------HhcCCCcccccchhhHHHHHHHh-----cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEE
Q 001979 84 QEQLVSE-------ILLDKNVKIWDVHKGCHMIRIKL-----RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIII 149 (987)
Q Consensus 84 ~~~ll~~-------l~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iii 149 (987)
..++... +-...+.. .+ .+..+.+.+ .+++=++|+|+++.. ...++|...+....+.+.+|+
T Consensus 79 c~~i~~g~~~d~~eid~~s~~~---v~-~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl 154 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASNTG---VD-DIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIF 154 (576)
T ss_pred HHHHhcCCCCCeeeeeccCccC---HH-HHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEE
Confidence 0000000 00000000 00 111122221 234457889999764 346666665554455667766
Q ss_pred EeCC-cccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCch-hHHHH
Q 001979 150 TTRD-RHLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPL-ALEIL 215 (987)
Q Consensus 150 TtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~l 215 (987)
+|.+ ..+... ......+++.+++.++..+.+...+-...... ..+.+..|++.++|..- |+..+
T Consensus 155 ~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i--~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 155 ATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI--SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 5544 333332 23456788999999998888876553332221 23567788999998663 44433
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.80 E-value=0.00029 Score=87.79 Aligned_cols=155 Identities=10% Similarity=0.122 Sum_probs=87.7
Q ss_pred CCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC-----CcceEEEEehHhhhhccCHHH
Q 001979 8 ASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQF-----DDGSSFLANVREVSQTRGLVA 82 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~~ 82 (987)
.-+.+|||+.+++++.+.|.... ..-+.++|++|+|||++|+.++.++...+ .+..+|.......
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l-------- 240 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL-------- 240 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH--------
Confidence 44679999999999999997643 23455899999999999999999875432 1133333211111
Q ss_pred HHHHHHHHHhcCCCcccccchhhHHHHHHHh-c-CCceEEEEeCCCChH---------HHHHHhcCCCCCCCC-cEEEEE
Q 001979 83 LQEQLVSEILLDKNVKIWDVHKGCHMIRIKL-R-HKRVLLVIDDVDEFD---------QLQALAGQRDWFGLG-SRIIIT 150 (987)
Q Consensus 83 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~-~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~g-s~IiiT 150 (987)
+ .+.... .+.+.....+.+.+ + +++.+|++|+++... +...++.+.. ..| -++|-+
T Consensus 241 -----~----a~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~Iga 308 (852)
T TIGR03346 241 -----I----AGAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGA 308 (852)
T ss_pred -----h----hcchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEe
Confidence 0 000000 01122222222223 2 468999999986432 1222222222 223 344544
Q ss_pred eCCccccc----c---cCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 151 TRDRHLLV----R---CDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 151 tR~~~v~~----~---~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
|.....-. . ......+.++..+.++..+++....
T Consensus 309 Tt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred CcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 44332211 0 1233568899999999999987653
No 161
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.79 E-value=2.1e-05 Score=62.88 Aligned_cols=59 Identities=27% Similarity=0.381 Sum_probs=27.7
Q ss_pred CCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCC
Q 001979 546 RLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTA 604 (987)
Q Consensus 546 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~ 604 (987)
+|++|++++|.....-+..|..+++|++|++++|.....-|..|.++++|+.|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555553322222344555555555555544332233344555555555555543
No 162
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.70 E-value=0.00029 Score=85.27 Aligned_cols=155 Identities=16% Similarity=0.137 Sum_probs=86.8
Q ss_pred CCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-----CCcceEEEEehHhhhhccCHHHH
Q 001979 9 SEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ-----FDDGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l 83 (987)
-+.++||+.+++++.+.|..... .-+.++|++|+|||++|+.++.++... +.+..+|... ..
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~---------~~-- 251 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD---------IG-- 251 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc---------HH--
Confidence 36799999999999999976322 345689999999999999999875322 2213333221 11
Q ss_pred HHHHHHHHhcCCCcccccchhhHHHHHHHh-cCCceEEEEeCCCCh----------HHHHHHhcCCCCCCCCcEEEEEeC
Q 001979 84 QEQLVSEILLDKNVKIWDVHKGCHMIRIKL-RHKRVLLVIDDVDEF----------DQLQALAGQRDWFGLGSRIIITTR 152 (987)
Q Consensus 84 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~IiiTtR 152 (987)
.++ .+.. ...+.+.....+.+.+ +.++.+|++|+++.. .+...+..+... ...-++|-+|.
T Consensus 252 --~ll----aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt 323 (758)
T PRK11034 252 --SLL----AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTT 323 (758)
T ss_pred --HHh----cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCC
Confidence 111 0000 0012222222233333 346789999999642 122222222111 12334454444
Q ss_pred Ccccccc-------cCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 153 DRHLLVR-------CDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 153 ~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
.++.... ...-..++++.++.+++.+++....
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 3332111 1223579999999999999998654
No 163
>PRK08116 hypothetical protein; Validated
Probab=97.69 E-value=0.00017 Score=76.83 Aligned_cols=102 Identities=22% Similarity=0.159 Sum_probs=57.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL 113 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 113 (987)
..+.|+|.+|+|||+||.++++.+..+.. .++|++ . .++...+....... .......+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~-~v~~~~----~------~~ll~~i~~~~~~~-------~~~~~~~~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGV-PVIFVN----F------PQLLNRIKSTYKSS-------GKEDENEIIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEE----H------HHHHHHHHHHHhcc-------ccccHHHHHHHh
Confidence 45889999999999999999998876633 556664 1 22233332221110 011122344555
Q ss_pred cCCceEEEEeCCCC--hHH--HHHHhcCCCC-CCCCcEEEEEeCCc
Q 001979 114 RHKRVLLVIDDVDE--FDQ--LQALAGQRDW-FGLGSRIIITTRDR 154 (987)
Q Consensus 114 ~~k~~LlVlDdv~~--~~~--~~~l~~~~~~-~~~gs~IiiTtR~~ 154 (987)
.+-. ||||||+.. ..+ .+.+...++. ...|..+||||...
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 5444 899999932 222 2223222211 13566789998743
No 164
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.0011 Score=72.52 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=62.3
Q ss_pred ceEEEEeCCCC--hHHHHHHhcCCCCCCCCcEEEEEeCCc-ccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCC
Q 001979 117 RVLLVIDDVDE--FDQLQALAGQRDWFGLGSRIIITTRDR-HLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTD 192 (987)
Q Consensus 117 ~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 192 (987)
+=++|+|+++. .....+++..+..-.+++.+|+||.+. .++.. ......+.+.+++.+++.+.+.... .. .
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~-~--- 181 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE-S--- 181 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc-C---
Confidence 33456799976 345666666655445677888777775 34433 2445689999999999999987653 11 1
Q ss_pred hHHHHHHHHHHHhCCCchhHHHH
Q 001979 193 GYFELSHSMVNYADGLPLALEIL 215 (987)
Q Consensus 193 ~~~~~~~~i~~~~~G~PLal~~l 215 (987)
..+.+..++..++|.|+....+
T Consensus 182 -~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -ChHHHHHHHHHcCCCHHHHHHH
Confidence 1234567889999999765544
No 165
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.65 E-value=0.0003 Score=80.79 Aligned_cols=175 Identities=17% Similarity=0.161 Sum_probs=93.1
Q ss_pred CCccccchhHHHHHHHhc--------CCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHH
Q 001979 10 EKLVGMDYRLEQIYLMLG--------TGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLV 81 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~--------~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 81 (987)
+++.|.+...+.+.+... .+-...+-|.++|++|.|||.+|+++++.+...| +-++ ...
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~-~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLD-VGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEE-hHH--------
Confidence 567787766655554221 1113446789999999999999999999864322 1122 110
Q ss_pred HHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH--------------HHHHHhcCCCCCCCCcEE
Q 001979 82 ALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD--------------QLQALAGQRDWFGLGSRI 147 (987)
Q Consensus 82 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--------------~~~~l~~~~~~~~~gs~I 147 (987)
+.....+. +.....+.++..-...+++|++|++|..- .+..+...+.....+--|
T Consensus 295 -----l~~~~vGe------se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 295 -----LFGGIVGE------SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred -----hcccccCh------HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 11110000 00111112222223578999999996421 012222222212234445
Q ss_pred EEEeCCccccc-----ccCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc
Q 001979 148 IITTRDRHLLV-----RCDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 148 iiTtR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 209 (987)
|.||.+...+. ....+..+.++..+.++-.++|..+..+....... ......+++.+.|.-
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~-~~dl~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK-KYDIKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc-ccCHHHHHhhcCCCC
Confidence 66776554322 22456788999999999999998887443211100 112456666666654
No 166
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.63 E-value=1.7e-06 Score=97.71 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=21.0
Q ss_pred ccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCC
Q 001979 585 VPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCK 627 (987)
Q Consensus 585 lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~ 627 (987)
+.+.+.-++.|+.|+|++|.++.+- .+..++.|++|+|+.|.
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~ 220 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC 220 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch
Confidence 3334444455555555555555443 44455555555555543
No 167
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.60 E-value=0.00043 Score=65.30 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=21.1
Q ss_pred EEEEcCCcchHHHHHHHHHHHhh
Q 001979 36 LGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 36 v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 168
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.60 E-value=0.0001 Score=80.68 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=61.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcC-CCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccc-----hhh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQ-FDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDV-----HKG 105 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-----~~~ 105 (987)
..+.++|+|++|.|||||++.+++.+..+ |+ ..+|+..+++- ...+.++++.+...+........... ...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfd-v~v~VlLIgER--~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPE-VELIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCc-eEEEEEEcCCC--CccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 44679999999999999999999987665 87 88898744331 25778888888654433222211111 111
Q ss_pred HHHHHHH-hcCCceEEEEeCCCChH
Q 001979 106 CHMIRIK-LRHKRVLLVIDDVDEFD 129 (987)
Q Consensus 106 ~~~l~~~-L~~k~~LlVlDdv~~~~ 129 (987)
.+..+.. -.+++++|++|++....
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHHH
Confidence 1122222 35799999999996543
No 169
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.59 E-value=0.0004 Score=81.84 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=43.4
Q ss_pred CCCCCCccccchhHHHHHHHhcCCC---CCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGL---DEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
|...++++|.+..++++..++.... ...++++|+|++|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3445789999999999999986532 3447899999999999999999998653
No 170
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.59 E-value=0.00054 Score=73.64 Aligned_cols=151 Identities=24% Similarity=0.224 Sum_probs=81.6
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc--cCHHHHHHHHHHHHhcCCCcccccchhhHHH
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT--RGLVALQEQLVSEILLDKNVKIWDVHKGCHM 108 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~--~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 108 (987)
...+.++|||++|.|||.+|++++.++...| ......+...+ -.-.+..++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~-----i~vsa~eL~sk~vGEsEk~IR~~F~~------------------ 202 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP-----IVMSAGELESENAGEPGKLIRQRYRE------------------ 202 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe-----EEEEHHHhhcCcCCcHHHHHHHHHHH------------------
Confidence 4568999999999999999999999874332 12212221111 0111222222221
Q ss_pred HHHH--hcCCceEEEEeCCCCh------------HHH--HHHhcCC----------CC----CCCCcEEEEEeCCccccc
Q 001979 109 IRIK--LRHKRVLLVIDDVDEF------------DQL--QALAGQR----------DW----FGLGSRIIITTRDRHLLV 158 (987)
Q Consensus 109 l~~~--L~~k~~LlVlDdv~~~------------~~~--~~l~~~~----------~~----~~~gs~IiiTtR~~~v~~ 158 (987)
..+. -+++.++|++||+|.. .++ ..++... .| ..++.-||+||.+...+.
T Consensus 203 A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LD 282 (413)
T PLN00020 203 AADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLY 282 (413)
T ss_pred HHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCC
Confidence 1111 1468899999998531 111 2333211 11 235567888988776543
Q ss_pred cc-----CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCch
Q 001979 159 RC-----DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPL 210 (987)
Q Consensus 159 ~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 210 (987)
.. ..+..|. .-+.++-.++++.+.-+...+ .....++++...|-|+
T Consensus 283 pALlRpGRfDk~i~--lPd~e~R~eIL~~~~r~~~l~----~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 283 APLIRDGRMEKFYW--APTREDRIGVVHGIFRDDGVS----REDVVKLVDTFPGQPL 333 (413)
T ss_pred HhHcCCCCCCceeC--CCCHHHHHHHHHHHhccCCCC----HHHHHHHHHcCCCCCc
Confidence 31 2334443 457788888887665332222 1334556666666553
No 171
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=1.1e-05 Score=81.98 Aligned_cols=185 Identities=24% Similarity=0.256 Sum_probs=91.7
Q ss_pred CCCcccEEeccCCcCCc--cccCccccCCCCcEEeCcCCCC---CccCCchhhhhhHHHhhhccccceeecCCcCCc--c
Q 001979 464 GVPKLERLVLDGCTNLS--FVHPSIGLLKRLKVLNMKECIR---IKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIE--E 536 (987)
Q Consensus 464 ~l~~L~~L~L~~~~~l~--~~~~~i~~l~~L~~L~L~~c~~---l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~--~ 536 (987)
.++.++.|||.+|.... ++..-+.+++.|++|+|+.|.. ++++| -...+|+.|-|.++.+. .
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-----------~p~~nl~~lVLNgT~L~w~~ 137 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-----------LPLKNLRVLVLNGTGLSWTQ 137 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-----------ccccceEEEEEcCCCCChhh
Confidence 35566666666654332 3333455667777777766532 22222 13456677777776654 4
Q ss_pred cCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccc--cccCCCCCcEeeCCCCCCCCCCccccC
Q 001979 537 IPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPE--NLGHIASLENLDLGGTAIRRPPSTIVL 614 (987)
Q Consensus 537 lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~L~~~~i~~~p~~i~~ 614 (987)
..+.+..+|.++.|.++.|+ ++.+++..+..-..-|+ .+...+++..+.+.-|.+. ..
T Consensus 138 ~~s~l~~lP~vtelHmS~N~--------------~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~------r~ 197 (418)
T KOG2982|consen 138 STSSLDDLPKVTELHMSDNS--------------LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLS------RI 197 (418)
T ss_pred hhhhhhcchhhhhhhhccch--------------hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHH------hh
Confidence 55556666666666666542 22222222111110000 0111112222222222211 12
Q ss_pred CCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCC
Q 001979 615 LENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLS 694 (987)
Q Consensus 615 l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~ 694 (987)
++++..+-+..|+.-.. ..-..+..++.+..|+|+.+++.+..-.+.+..++.|..|.++
T Consensus 198 Fpnv~sv~v~e~PlK~~--------------------s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~ 257 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTE--------------------SSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVS 257 (418)
T ss_pred cccchheeeecCcccch--------------------hhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeecc
Confidence 34455555544432111 0011233455666778888887654445567888888888888
Q ss_pred CCCCc
Q 001979 695 RNNFF 699 (987)
Q Consensus 695 ~n~l~ 699 (987)
++.+.
T Consensus 258 ~~Pl~ 262 (418)
T KOG2982|consen 258 ENPLS 262 (418)
T ss_pred CCccc
Confidence 88665
No 172
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.58 E-value=0.00087 Score=75.66 Aligned_cols=148 Identities=17% Similarity=0.177 Sum_probs=88.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhc
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLR 114 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~ 114 (987)
++.|.|+-++||||+++.+.....+. .+++...........+. +.+.. +...-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~----~iy~~~~d~~~~~~~l~----d~~~~------------------~~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE----IIYINFDDLRLDRIELL----DLLRA------------------YIELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc----eEEEEecchhcchhhHH----HHHHH------------------HHHhhc
Confidence 99999999999999996666654333 34443111111111111 11111 111111
Q ss_pred CCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCcccccc------cCcCceEEcCCCCHHHHHHHHHHhhccCC
Q 001979 115 HKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDRHLLVR------CDVEDTYMVEKLNYNEALHLFSWKAFRKG 188 (987)
Q Consensus 115 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 188 (987)
.++..|+||.|.....|+..+..+.+.++. +|+||+-+..+... .|....+++-||+..|-..+-...+
T Consensus 93 ~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~---- 167 (398)
T COG1373 93 REKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI---- 167 (398)
T ss_pred cCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----
Confidence 188899999999999998888777666666 89998887654432 2445689999999999877543000
Q ss_pred CCCChHHHHHHHHHHHhCCCchhHHHH
Q 001979 189 HPTDGYFELSHSMVNYADGLPLALEIL 215 (987)
Q Consensus 189 ~~~~~~~~~~~~i~~~~~G~PLal~~l 215 (987)
.+. .. ...-+-.-..||.|-++..-
T Consensus 168 ~~~-~~-~~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 168 EPS-KL-ELLFEKYLETGGFPESVKAD 192 (398)
T ss_pred chh-HH-HHHHHHHHHhCCCcHHHhCc
Confidence 000 11 11222234568888776543
No 173
>PRK08181 transposase; Validated
Probab=97.56 E-value=0.00035 Score=73.84 Aligned_cols=35 Identities=23% Similarity=0.008 Sum_probs=28.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.-+.|+|++|+|||.||.++++....+.. .+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~-~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGW-RVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCC-ceeeee
Confidence 45889999999999999999998765543 466665
No 174
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.54 E-value=0.00069 Score=83.47 Aligned_cols=173 Identities=14% Similarity=0.152 Sum_probs=96.1
Q ss_pred CCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhcc
Q 001979 10 EKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTR 78 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (987)
+++.|.+...++|.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .+. ..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi----~v~-~~------ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFI----AVR-GP------ 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE----EEe-hH------
Confidence 5677888887777776531 1123456889999999999999999997643321 121 00
Q ss_pred CHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--------------HHHHHHhcCCCCC--C
Q 001979 79 GLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--------------DQLQALAGQRDWF--G 142 (987)
Q Consensus 79 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~ 142 (987)
+++....+. ........+...-+..+.+|++|+++.. ..+..++..+... .
T Consensus 522 -------~l~~~~vGe------se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 522 -------EILSKWVGE------SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred -------HHhhcccCc------HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 111111100 0011111222223456789999998642 1233344433321 2
Q ss_pred CCcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc
Q 001979 143 LGSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 143 ~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 209 (987)
.+..||.||.....+.. -..+..+.++..+.++..++|..+.-+.....+ .-...+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~---~~l~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED---VDLEELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHcCCCC
Confidence 34455667765544332 135678999999999999999866533222111 11355666676644
No 175
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.53 E-value=0.0027 Score=64.45 Aligned_cols=178 Identities=19% Similarity=0.218 Sum_probs=99.8
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHH
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIR 110 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 110 (987)
++-+++.++|.-|.|||+++|++....- .-+...+.++ ........+...++..+.... ..........+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~-~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p---~~~~~~~~e~~~ 119 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN-EDQVAVVVID-----KPTLSDATLLEAIVADLESQP---KVNVNAVLEQID 119 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC-CCceEEEEec-----CcchhHHHHHHHHHHHhccCc---cchhHHHHHHHH
Confidence 3446999999999999999995555432 1121222232 223344556666666644321 112222233333
Q ss_pred HHh-----cCCc-eEEEEeCCCCh--HHHHHHhcCC---CCCCCCcEEEEEeCCccccc--------cc--CcCceEEcC
Q 001979 111 IKL-----RHKR-VLLVIDDVDEF--DQLQALAGQR---DWFGLGSRIIITTRDRHLLV--------RC--DVEDTYMVE 169 (987)
Q Consensus 111 ~~L-----~~k~-~LlVlDdv~~~--~~~~~l~~~~---~~~~~gs~IiiTtR~~~v~~--------~~--~~~~~~~l~ 169 (987)
+.| ++++ +.+++||..+. ++++.+.-.. .....--+|+..-.. .+.. .. ..+-.|+++
T Consensus 120 ~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp-~L~~~lr~~~l~e~~~R~~ir~~l~ 198 (269)
T COG3267 120 RELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQP-KLRPRLRLPVLRELEQRIDIRIELP 198 (269)
T ss_pred HHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCc-ccchhhchHHHHhhhheEEEEEecC
Confidence 322 4677 99999998553 3344433221 111111223332221 1111 11 122239999
Q ss_pred CCCHHHHHHHHHHhhccCCCCCChH-HHHHHHHHHHhCCCchhHHHHhhh
Q 001979 170 KLNYNEALHLFSWKAFRKGHPTDGY-FELSHSMVNYADGLPLALEILGSF 218 (987)
Q Consensus 170 ~L~~~ea~~Lf~~~a~~~~~~~~~~-~~~~~~i~~~~~G~PLal~~l~~~ 218 (987)
+++.++...++.++..+...+.+-+ .+....|.....|.|.++..++..
T Consensus 199 P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 199 PLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred CcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9999999999998876554443332 345677888999999999877653
No 176
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.53 E-value=0.00027 Score=67.48 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=27.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
+.+.|+|++|+||||+|+.++..+..... .+++++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGG-GVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCC-CEEEEC
Confidence 57889999999999999999997765543 355554
No 177
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.53 E-value=0.00052 Score=84.55 Aligned_cols=174 Identities=17% Similarity=0.175 Sum_probs=94.5
Q ss_pred CCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhcc
Q 001979 10 EKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTR 78 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (987)
+++.|.+..++++.+++.. +-...+.|.|+|++|+||||+|+++++.....| +.+. ..+.....
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~----i~i~-~~~i~~~~ 252 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF----ISIN-GPEIMSKY 252 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE----EEEe-cHHHhccc
Confidence 5688999999999887632 112346788999999999999999998764322 2222 11110000
Q ss_pred CHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh-------------HHHHHHhcCCCCC-CCC
Q 001979 79 GLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF-------------DQLQALAGQRDWF-GLG 144 (987)
Q Consensus 79 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~-~~g 144 (987)
.. .........+.......+.+|+|||++.. .....+...+... ..+
T Consensus 253 -------------~g------~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 253 -------------YG------ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred -------------cc------HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 00 00111122233333456789999998542 1123333322211 233
Q ss_pred cEEEE-EeCCccccc-cc----CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCch
Q 001979 145 SRIII-TTRDRHLLV-RC----DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPL 210 (987)
Q Consensus 145 s~Iii-TtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 210 (987)
..++| ||....-.. .. ..+..+.+...+.++..+++..+.-......+ .....+++.+.|.--
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d---~~l~~la~~t~G~~g 382 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED---VDLDKLAEVTHGFVG 382 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc---cCHHHHHHhCCCCCH
Confidence 44444 554432111 11 23457888888999999998855422111111 225667777777643
No 178
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=8.6e-05 Score=54.39 Aligned_cols=39 Identities=33% Similarity=0.538 Sum_probs=21.6
Q ss_pred CCCEEeCCCCCCcccchhhhccCCCcEEecCCCcccccCC
Q 001979 687 ALTNLTLSRNNFFSLPASINQLSRLETLNIDYCNRLKALP 726 (987)
Q Consensus 687 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 726 (987)
+|++|+|++|+++.+|..+.+|++|+.|++++| .+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 456666666666666655666666666666664 344443
No 179
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.0013 Score=72.62 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=82.9
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI 111 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 111 (987)
....+.|||..|.|||.|++++.+......+ ....+.. + .......++..+.. ...+..++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~-~a~v~y~----~----se~f~~~~v~a~~~----------~~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGP-NARVVYL----T----SEDFTNDFVKALRD----------NEMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCC-CceEEec----c----HHHHHHHHHHHHHh----------hhHHHHHH
Confidence 3568999999999999999999998877766 3333321 1 12223333333221 23345666
Q ss_pred HhcCCceEEEEeCCCCh----HHHHHHhcCCCC-CCCCcEEEEEeCCcc---------cccccCcCceEEcCCCCHHHHH
Q 001979 112 KLRHKRVLLVIDDVDEF----DQLQALAGQRDW-FGLGSRIIITTRDRH---------LLVRCDVEDTYMVEKLNYNEAL 177 (987)
Q Consensus 112 ~L~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~ 177 (987)
.. .-=++++||++-. ..-+++...++. ...|..||+|++... +...++..-++++.+++.+...
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 65 3348889998442 112223322221 133558999986531 1122344568999999999999
Q ss_pred HHHHHhhccCC
Q 001979 178 HLFSWKAFRKG 188 (987)
Q Consensus 178 ~Lf~~~a~~~~ 188 (987)
+++...+....
T Consensus 251 aiL~kka~~~~ 261 (408)
T COG0593 251 AILRKKAEDRG 261 (408)
T ss_pred HHHHHHHHhcC
Confidence 99998764433
No 180
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.47 E-value=0.0016 Score=68.58 Aligned_cols=202 Identities=15% Similarity=0.136 Sum_probs=112.1
Q ss_pred CCCccccc---hhHHHHHHHhcCC-CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcc-----eEEEEehHhhhhccC
Q 001979 9 SEKLVGMD---YRLEQIYLMLGTG-LDEARILGICGMGGIGKTTLARFVFDNISYQFDDG-----SSFLANVREVSQTRG 79 (987)
Q Consensus 9 ~~~~vGr~---~~~~~l~~~L~~~-~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~-----~~~~~~~~~~~~~~~ 79 (987)
.+.+||-. .-++++.+++... ....+-+.|+|.+|.|||++++.+.......++.. ++.+. .....+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~ 108 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPD 108 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCC
Confidence 35566654 3355566666543 23456799999999999999999998755444311 22232 556688
Q ss_pred HHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCc-eEEEEeCCCCh-----HHHHHHhcCCCCCC---CCcEEEEE
Q 001979 80 LVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKR-VLLVIDDVDEF-----DQLQALAGQRDWFG---LGSRIIIT 150 (987)
Q Consensus 80 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~-~LlVlDdv~~~-----~~~~~l~~~~~~~~---~gs~IiiT 150 (987)
...++..++.++...-... .........+...++.-+ =+||+|++.+. .+-.++...+...+ .=+-|.+-
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~-~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPR-DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred hHHHHHHHHHHhCcccCCC-CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEec
Confidence 8999999999965443222 233444455556665433 38899999653 11111211111112 23445555
Q ss_pred eCCccccccc-----CcCceEEcCCCCHHH-HHHHHHHhhc--cCCCC-CChHHHHHHHHHHHhCCCchhHHHH
Q 001979 151 TRDRHLLVRC-----DVEDTYMVEKLNYNE-ALHLFSWKAF--RKGHP-TDGYFELSHSMVNYADGLPLALEIL 215 (987)
Q Consensus 151 tR~~~v~~~~-----~~~~~~~l~~L~~~e-a~~Lf~~~a~--~~~~~-~~~~~~~~~~i~~~~~G~PLal~~l 215 (987)
|++..-+-.. .....+.++....++ ...|+..... .-..+ .-...++++.|...++|+.--+..+
T Consensus 188 t~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 188 TREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred cHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 5543221111 122456666665544 4444432211 11111 1234678999999999987554433
No 181
>PRK12377 putative replication protein; Provisional
Probab=97.42 E-value=0.00068 Score=70.77 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=29.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...+.|+|++|+|||+||.++++.+..+.. .+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~-~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGR-SVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CeEEEE
Confidence 357889999999999999999998876554 566665
No 182
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.40 E-value=4.2e-05 Score=76.95 Aligned_cols=143 Identities=18% Similarity=0.251 Sum_probs=89.1
Q ss_pred ccccCCCCCCCEEecCCCCCCCCCCC-----CCCCCcccEEeccCCcCCcccc-------------CccccCCCCcEEeC
Q 001979 436 WQGVQNMRHLKFIKLSHSVHLTKTPD-----FTGVPKLERLVLDGCTNLSFVH-------------PSIGLLKRLKVLNM 497 (987)
Q Consensus 436 ~~~~~~l~~L~~L~Ls~~~~~~~~~~-----~~~l~~L~~L~L~~~~~l~~~~-------------~~i~~l~~L~~L~L 497 (987)
.+.+-+|++|+..+||+|-+....|. ++..++|++|.|++|..-..-- .....-+.|++...
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 34566889999999999988777664 6788899999999875432211 11234567888777
Q ss_pred cCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcc--c----CccccCCCCCCEEeccCCCCCcc----cCccCCC
Q 001979 498 KECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEE--I----PPSIKFLSRLTVLTLRDCKKLVS----LPSSISD 567 (987)
Q Consensus 498 ~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~--l----p~~i~~l~~L~~L~L~~~~~l~~----lp~~l~~ 567 (987)
..| .+...|...... .+..-.+|+.+.+..|.|.. + --.+.++.+|+.|||.+|..... +...++.
T Consensus 165 grN-Rlengs~~~~a~---~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 165 GRN-RLENGSKELSAA---LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred ccc-hhccCcHHHHHH---HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence 665 444444332111 12333678888888888761 1 12355677888888887765422 2222344
Q ss_pred CCCCCEEEecCCCCC
Q 001979 568 LRSLKVLNLNGCSKL 582 (987)
Q Consensus 568 l~~L~~L~l~~c~~l 582 (987)
.+.|+.|.+..|-..
T Consensus 241 W~~lrEL~lnDClls 255 (388)
T COG5238 241 WNLLRELRLNDCLLS 255 (388)
T ss_pred cchhhhccccchhhc
Confidence 455677777666443
No 183
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.40 E-value=0.00018 Score=52.74 Aligned_cols=40 Identities=30% Similarity=0.542 Sum_probs=34.7
Q ss_pred CcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccc
Q 001979 661 HCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLP 702 (987)
Q Consensus 661 ~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp 702 (987)
++|++|++++|++.+ +|..++.+++|+.|++++|.+++++
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCc
Confidence 479999999999975 8888999999999999999999876
No 184
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0042 Score=68.51 Aligned_cols=157 Identities=11% Similarity=0.108 Sum_probs=89.2
Q ss_pred CCccc-cchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC--CCcceEEEEehHhhhhccCHHHHHHH
Q 001979 10 EKLVG-MDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ--FDDGSSFLANVREVSQTRGLVALQEQ 86 (987)
Q Consensus 10 ~~~vG-r~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (987)
+.++| -+.-++.+...+..+ .-.+...++|+.|+||||+|+.+++.+-.. ..+..| +.....+.
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~c------------g~C~~c~~ 71 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPC------------GTCTNCKR 71 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC------------CcCHHHHH
Confidence 45677 667777888887643 234667899999999999999999875221 110000 00000001
Q ss_pred HHHHHhcCCCc-------ccccchhhHHHHHHH-----hcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeC
Q 001979 87 LVSEILLDKNV-------KIWDVHKGCHMIRIK-----LRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTR 152 (987)
Q Consensus 87 ll~~l~~~~~~-------~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR 152 (987)
+... ...+. .....++. ..+.+. ..+.+=++|+|+++.. +..+++...+..-.+++.+|++|.
T Consensus 72 ~~~~--~hpD~~~i~~~~~~i~id~i-r~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 72 IDSG--NHPDVHLVAPDGQSIKKDQI-RYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred HhcC--CCCCEEEeccccccCCHHHH-HHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 1000 00000 00001111 111111 1234457899999764 346667766665567787887776
Q ss_pred Cc-ccccc-cCcCceEEcCCCCHHHHHHHHHH
Q 001979 153 DR-HLLVR-CDVEDTYMVEKLNYNEALHLFSW 182 (987)
Q Consensus 153 ~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~ 182 (987)
+. .+... ......+++.+++.++..+.+..
T Consensus 149 ~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 149 NKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 54 33333 24457899999999999888864
No 185
>PRK09183 transposase/IS protein; Provisional
Probab=97.38 E-value=0.00052 Score=72.74 Aligned_cols=36 Identities=22% Similarity=0.113 Sum_probs=26.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...+.|+|++|+|||+||.+++.....+-. .+.|+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~-~v~~~~ 137 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGI-KVRFTT 137 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCC-eEEEEe
Confidence 356889999999999999999887544332 344554
No 186
>PRK10536 hypothetical protein; Provisional
Probab=97.36 E-value=0.00053 Score=70.74 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=38.9
Q ss_pred CCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHH-h-hcCCC
Q 001979 10 EKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDN-I-SYQFD 62 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~-~-~~~f~ 62 (987)
..+.++......+..++.. ..+|.+.|++|.|||+||.+++.+ + ...|.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~ 105 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVD 105 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCee
Confidence 5567888888888888854 248999999999999999999884 3 44455
No 187
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0044 Score=70.84 Aligned_cols=171 Identities=15% Similarity=0.201 Sum_probs=94.2
Q ss_pred CccccchhHHHHHHHhc-----------CCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccC
Q 001979 11 KLVGMDYRLEQIYLMLG-----------TGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRG 79 (987)
Q Consensus 11 ~~vGr~~~~~~l~~~L~-----------~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 79 (987)
++=|.++...+|.+... .+-...+-|..+|++|.|||++|+++++.-.-.|= . +..
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFl------s----vkg--- 501 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFL------S----VKG--- 501 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCee------e----ccC---
Confidence 44446665556654332 12245678999999999999999999997654442 2 110
Q ss_pred HHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh-cCCceEEEEeCCCChH-------------HHHHHhcCCCCCCCCc
Q 001979 80 LVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL-RHKRVLLVIDDVDEFD-------------QLQALAGQRDWFGLGS 145 (987)
Q Consensus 80 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~gs 145 (987)
-++++...++ .+..+..+.+.- +-...+|.||.+|... .+..++..++-.....
T Consensus 502 -----pEL~sk~vGe-------SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 502 -----PELFSKYVGE-------SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred -----HHHHHHhcCc-------hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC
Confidence 1122221111 111112222222 2356888999886532 2556666555444443
Q ss_pred EEEE---EeCCcccccc----cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc
Q 001979 146 RIII---TTRDRHLLVR----CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 146 ~Iii---TtR~~~v~~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 209 (987)
.|+| |.|...+-.. -..+..+.++.-+.+...++|+.++-+-..+.. -..+++++++.|.-
T Consensus 570 ~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 570 NVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED---VDLEELAQATEGYS 637 (693)
T ss_pred cEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCC
Confidence 3333 3343333222 136788999999999999999999844333322 12345555555544
No 188
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.016 Score=62.97 Aligned_cols=175 Identities=17% Similarity=0.134 Sum_probs=98.8
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCc
Q 001979 18 RLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNV 97 (987)
Q Consensus 18 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~ 97 (987)
..+++.+.+..+ .-...+.++|+.|+||+++|..++..+-..-. ..+- . .+ . .+.+.. ....+.
T Consensus 12 ~~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~-~~~~-~-c~----------~-c~~~~~-g~HPD~ 75 (319)
T PRK08769 12 AYDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGP-DPAA-A-QR----------T-RQLIAA-GTHPDL 75 (319)
T ss_pred HHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCC-CCCC-c-ch----------H-HHHHhc-CCCCCE
Confidence 455566666543 23356889999999999999999987522211 0000 0 00 0 000000 000000
Q ss_pred ccc-----------cchhhHHHHHH---Hh-----cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-c
Q 001979 98 KIW-----------DVHKGCHMIRI---KL-----RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDR-H 155 (987)
Q Consensus 98 ~~~-----------~~~~~~~~l~~---~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~-~ 155 (987)
... ...-.++.|++ .+ .+++=++|+|+++.. ..-.+++..+..-.+++.+|++|.+. .
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~ 155 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPAR 155 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhh
Confidence 000 00011222322 22 245568999999874 34566666555445677777777653 4
Q ss_pred ccccc-CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 156 LLVRC-DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 156 v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
++... .....+.+.+++.+++.+.+.... .+ ...+..++..++|.|+....+.
T Consensus 156 lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 156 LPATIRSRCQRLEFKLPPAHEALAWLLAQG----VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CchHHHhhheEeeCCCcCHHHHHHHHHHcC----CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 44442 445788999999999998886431 11 2336678999999998765554
No 189
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.35 E-value=0.00055 Score=71.29 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 19 LEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 19 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
+..+.+....-......+.++|.+|+|||+||.++++.+..+-. .+++++
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~-~v~~it 134 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGK-SVLIIT 134 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEEEE
Confidence 33444444322223357889999999999999999998766544 556664
No 190
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.32 E-value=0.0042 Score=62.61 Aligned_cols=170 Identities=21% Similarity=0.263 Sum_probs=101.0
Q ss_pred CCCccccchhHHH---HHHHhcCC----CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHH
Q 001979 9 SEKLVGMDYRLEQ---IYLMLGTG----LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLV 81 (987)
Q Consensus 9 ~~~~vGr~~~~~~---l~~~L~~~----~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 81 (987)
-+++||.+....+ |.+.|... .-..+-|..+|++|.|||.+|++++++.+.-| +. +.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~------l~----vk------ 183 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL------LL----VK------ 183 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce------EE----ec------
Confidence 3678898766554 34555431 22468899999999999999999999754222 22 10
Q ss_pred HHHHHHHHHHhcCCCcccccchhhHHHHHH---H-hcCCceEEEEeCCCCh--------------HHHHHHhcCCCCC--
Q 001979 82 ALQEQLVSEILLDKNVKIWDVHKGCHMIRI---K-LRHKRVLLVIDDVDEF--------------DQLQALAGQRDWF-- 141 (987)
Q Consensus 82 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~---~-L~~k~~LlVlDdv~~~--------------~~~~~l~~~~~~~-- 141 (987)
..+++.+ .+.++...|++ + -+..++++.+|.+|.. +.+.+++..+...
T Consensus 184 --at~liGe----------hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e 251 (368)
T COG1223 184 --ATELIGE----------HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE 251 (368)
T ss_pred --hHHHHHH----------HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc
Confidence 0122222 11223333332 2 2357899999998542 2356666655422
Q ss_pred CCCcEEEEEeCCccccccc---CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc
Q 001979 142 GLGSRIIITTRDRHLLVRC---DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 142 ~~gs~IiiTtR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 209 (987)
+.|...|-.|....++... ....-++..--+++|-.+++..++-.-..|.+. -.+.++++++|.-
T Consensus 252 neGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~---~~~~~~~~t~g~S 319 (368)
T COG1223 252 NEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA---DLRYLAAKTKGMS 319 (368)
T ss_pred CCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc---CHHHHHHHhCCCC
Confidence 3465666666666555432 223456677779999999999988544433221 2566777777753
No 191
>PRK06921 hypothetical protein; Provisional
Probab=97.32 E-value=0.00045 Score=73.40 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=29.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcC-CCcceEEEE
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQ-FDDGSSFLA 69 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~ 69 (987)
...+.++|..|+|||+||.++++.+..+ .. .++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~-~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGV-PVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCc-eEEEEE
Confidence 4678899999999999999999987665 33 567776
No 192
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0019 Score=74.51 Aligned_cols=159 Identities=20% Similarity=0.218 Sum_probs=91.8
Q ss_pred CCccccchhHHHHHHHhcCC----CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 10 EKLVGMDYRLEQIYLMLGTG----LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~----~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
.+=+|.++-.++|.+.|... .-+..+++++||+|+|||.||+.+++.+...|- ++-+--+++.++-.+-. +
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv--R~sLGGvrDEAEIRGHR---R 397 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV--RISLGGVRDEAEIRGHR---R 397 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE--EEecCccccHHHhcccc---c
Confidence 44578999999999888532 234579999999999999999999999877774 22222222222111100 0
Q ss_pred HHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH------HHHHHhcCCCCCC-------------CCcE
Q 001979 86 QLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD------QLQALAGQRDWFG-------------LGSR 146 (987)
Q Consensus 86 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~------~~~~l~~~~~~~~-------------~gs~ 146 (987)
..+.. -....++.+ ...+.+.-+++||.+|... .-.+++..+..-. .=|.
T Consensus 398 TYIGa----------mPGrIiQ~m-kka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 398 TYIGA----------MPGKIIQGM-KKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ccccc----------CChHHHHHH-HHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 11100 011111111 2234567899999997532 1233333322111 1244
Q ss_pred E-EEEeCCc-c-c-ccccCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 147 I-IITTRDR-H-L-LVRCDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 147 I-iiTtR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
| .|||-+. + + ..-+....++++.+-+++|-.++-.++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4 3455443 2 1 1123455789999999999999988876
No 193
>PRK06526 transposase; Provisional
Probab=97.27 E-value=0.00054 Score=72.10 Aligned_cols=28 Identities=25% Similarity=0.063 Sum_probs=23.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
.+-+.|+|++|+|||+||.++..+...+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 3568899999999999999999876543
No 194
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.25 E-value=0.0027 Score=67.71 Aligned_cols=36 Identities=31% Similarity=0.299 Sum_probs=26.7
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 18 RLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 18 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
-++++...+..+ +.|.|.|++|+|||++|++++...
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 344555555432 456799999999999999999865
No 195
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.011 Score=69.98 Aligned_cols=176 Identities=19% Similarity=0.270 Sum_probs=109.0
Q ss_pred CCCCCccccchhHHHHHHHh---cC-------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhh
Q 001979 7 SASEKLVGMDYRLEQIYLML---GT-------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQ 76 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L---~~-------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 76 (987)
..-+++.|.++..++|.+.. .. +..-.+=|.++|++|.|||-||++++-+- ++=|+. ++.
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA------gVPF~s----vSG 377 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFS----VSG 377 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc------CCceee----ech
Confidence 34578899888777776654 22 11235678899999999999999999763 333443 221
Q ss_pred ccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh----cCCceEEEEeCCCCh-----------------HHHHHHh
Q 001979 77 TRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL----RHKRVLLVIDDVDEF-----------------DQLQALA 135 (987)
Q Consensus 77 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVlDdv~~~-----------------~~~~~l~ 135 (987)
.+++..... .+...+++.. ...+.+|.+|+++.. ..+.++.
T Consensus 378 --------SEFvE~~~g----------~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll 439 (774)
T KOG0731|consen 378 --------SEFVEMFVG----------VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLL 439 (774)
T ss_pred --------HHHHHHhcc----------cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHH
Confidence 111111111 0111222222 356788888987532 2367777
Q ss_pred cCCCCCCCCcEEE--EEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCC
Q 001979 136 GQRDWFGLGSRII--ITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGL 208 (987)
Q Consensus 136 ~~~~~~~~gs~Ii--iTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 208 (987)
...+-+..+..|| -+|+...++.. -..+..+.++.-+..+..++|..++-..... .+..++++ |+...-|.
T Consensus 440 ~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf 517 (774)
T KOG0731|consen 440 VEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGF 517 (774)
T ss_pred HHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCC
Confidence 7666555444333 34554444332 2456788999999999999999998554443 34456677 99999998
Q ss_pred chhH
Q 001979 209 PLAL 212 (987)
Q Consensus 209 PLal 212 (987)
+=|.
T Consensus 518 ~gad 521 (774)
T KOG0731|consen 518 SGAD 521 (774)
T ss_pred cHHH
Confidence 8664
No 196
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.21 E-value=0.0022 Score=79.24 Aligned_cols=52 Identities=29% Similarity=0.439 Sum_probs=40.2
Q ss_pred CCccccchhHHHHHHHhcC----CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 10 EKLVGMDYRLEQIYLMLGT----GLDEARILGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
++.+|.+.-.+++.+++.. +.....++.++|++|+|||++|+.++..+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4578988888888876642 122345799999999999999999999875544
No 197
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.16 E-value=0.00047 Score=68.49 Aligned_cols=36 Identities=25% Similarity=0.217 Sum_probs=26.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
..-+.|+|+.|+|||.||.++++++..+-. .+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~-~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGY-SVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCc-ceeEee
Confidence 456899999999999999999997655333 467765
No 198
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.15 E-value=0.0013 Score=73.51 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=63.3
Q ss_pred CCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhc--CCCcceEEEEehHhhhhccCHHHHHHH
Q 001979 9 SEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISY--QFDDGSSFLANVREVSQTRGLVALQEQ 86 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (987)
.+++++.+..++.+...|..+ +.|.++|++|+|||++|+++++.+.. .+. .+.|+. ++...+..+....
T Consensus 174 l~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~-~v~~Vt----FHpsySYeDFI~G 244 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQ-RVNMVQ----FHQSYSYEDFIQG 244 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccc-eeeEEe----ecccccHHHHhcc
Confidence 356788888999998888643 46778999999999999999998753 344 555665 3433333332211
Q ss_pred HHHHHhcCCCcccccch-hhHHHHHHHhc--CCceEEEEeCCCCh
Q 001979 87 LVSEILLDKNVKIWDVH-KGCHMIRIKLR--HKRVLLVIDDVDEF 128 (987)
Q Consensus 87 ll~~l~~~~~~~~~~~~-~~~~~l~~~L~--~k~~LlVlDdv~~~ 128 (987)
. . .......-.. ...+.++.... ++++++|+|+++..
T Consensus 245 ~----r-P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 245 Y----R-PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred c----C-CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 1 0 0111110001 11222333322 46899999999653
No 199
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0043 Score=69.93 Aligned_cols=153 Identities=18% Similarity=0.206 Sum_probs=87.7
Q ss_pred CCCccccchhHHHHHHHhcC----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhcc
Q 001979 9 SEKLVGMDYRLEQIYLMLGT----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTR 78 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (987)
.+++=|.++.+.++.+++.. +-...|-|.++|++|.|||.||++++.+..--| +. ++.
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf------~~----isA-- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF------LS----ISA-- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce------Ee----ecc--
Confidence 46788999999999887743 113457789999999999999999999864332 22 111
Q ss_pred CHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH-------------HHHHHhcCCCCC----
Q 001979 79 GLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD-------------QLQALAGQRDWF---- 141 (987)
Q Consensus 79 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~---- 141 (987)
-++++.+.++ +.+...+.+.+.-...++++++|++|... .+.+++..+...
T Consensus 257 ------peivSGvSGE------SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~ 324 (802)
T KOG0733|consen 257 ------PEIVSGVSGE------SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEK 324 (802)
T ss_pred ------hhhhcccCcc------cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccc
Confidence 1233332211 12222223333445688999999996521 133444333211
Q ss_pred --CCCcEEEE-EeCCccccccc----CcCceEEcCCCCHHHHHHHHHHhhc
Q 001979 142 --GLGSRIII-TTRDRHLLVRC----DVEDTYMVEKLNYNEALHLFSWKAF 185 (987)
Q Consensus 142 --~~gs~Iii-TtR~~~v~~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~ 185 (987)
+.+.-||- |+|...+-..+ ..++-+.+.--+..+-.++++..+-
T Consensus 325 ~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 325 TKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICR 375 (802)
T ss_pred cCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHh
Confidence 22322332 55554443332 2345666766677777777765553
No 200
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.017 Score=62.73 Aligned_cols=173 Identities=15% Similarity=0.135 Sum_probs=98.0
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhh-cCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCC
Q 001979 18 RLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNIS-YQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKN 96 (987)
Q Consensus 18 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~ 96 (987)
..+++.+.+..+ .-...+.+.|+.|+||+++|+.++..+- ..-++..| +.-..-+.+... ...+
T Consensus 11 ~~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~C------------g~C~sC~~~~~g--~HPD 75 (319)
T PRK06090 11 VWQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEAC------------GFCHSCELMQSG--NHPD 75 (319)
T ss_pred HHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCC------------CCCHHHHHHHcC--CCCC
Confidence 445566666443 2346788999999999999999998642 11110000 000000011000 0000
Q ss_pred c---------ccccchhhHHHHHHHh-----cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-ccccc
Q 001979 97 V---------KIWDVHKGCHMIRIKL-----RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDR-HLLVR 159 (987)
Q Consensus 97 ~---------~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~-~v~~~ 159 (987)
. +.-..++ +..+.+.+ .+++=++|+|+++.. ....+++..+..-.+++.+|++|.+. .++..
T Consensus 76 ~~~i~p~~~~~~I~vdq-iR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT 154 (319)
T PRK06090 76 LHVIKPEKEGKSITVEQ-IRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPT 154 (319)
T ss_pred EEEEecCcCCCcCCHHH-HHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH
Confidence 0 0001111 11122222 234458889999774 45666776665556677777766654 45544
Q ss_pred c-CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 160 C-DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 160 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
. .....+.+.+++.+++.+.+.... .. ....++..++|.|+....+.
T Consensus 155 I~SRCq~~~~~~~~~~~~~~~L~~~~-----~~-----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 155 IVSRCQQWVVTPPSTAQAMQWLKGQG-----IT-----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred HHhcceeEeCCCCCHHHHHHHHHHcC-----Cc-----hHHHHHHHcCCCHHHHHHHh
Confidence 3 455789999999999999886532 11 23567899999998776553
No 201
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.13 E-value=0.00082 Score=73.35 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=29.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.-+.++|+.|+|||+||.++++.+..+-. .++|++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~-~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGK-SVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCC-eEEEEE
Confidence 66899999999999999999998765544 567775
No 202
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.023 Score=61.83 Aligned_cols=174 Identities=15% Similarity=0.129 Sum_probs=98.7
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC--CcceEEEEehHhhhhccCHHHHHHHHHHHHhcCC
Q 001979 18 RLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQF--DDGSSFLANVREVSQTRGLVALQEQLVSEILLDK 95 (987)
Q Consensus 18 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~ 95 (987)
..+++.+.+..+ .-.....+.|+.|+||+++|+.++..+-..- .+..| +.-...+.+... ...
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~C------------g~C~sC~~~~~g--~HP 74 (325)
T PRK06871 10 TYQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPC------------GQCHSCHLFQAG--NHP 74 (325)
T ss_pred HHHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCC------------CCCHHHHHHhcC--CCC
Confidence 345566666543 2236778999999999999999998753211 10111 000011111100 000
Q ss_pred Cccc----ccchhhHHHHH---HHh-----cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-ccccc-
Q 001979 96 NVKI----WDVHKGCHMIR---IKL-----RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDR-HLLVR- 159 (987)
Q Consensus 96 ~~~~----~~~~~~~~~l~---~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~-~v~~~- 159 (987)
+... ....-.++.++ +.+ .+++=++|+|+++.. ....+++..+..-.+++.+|++|.+. .++..
T Consensus 75 D~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 75 DFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred CEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHH
Confidence 0000 00001122222 222 245557889999874 45667777666556677777777764 45544
Q ss_pred cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHH
Q 001979 160 CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALE 213 (987)
Q Consensus 160 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 213 (987)
......+.+.+++.+++.+.+..... . + ...+..++..++|.|+...
T Consensus 155 ~SRC~~~~~~~~~~~~~~~~L~~~~~---~--~--~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 155 YSRCQTWLIHPPEEQQALDWLQAQSS---A--E--ISEILTALRINYGRPLLAL 201 (325)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHhc---c--C--hHHHHHHHHHcCCCHHHHH
Confidence 34457899999999999998876541 1 1 1235677889999996443
No 203
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.021 Score=57.13 Aligned_cols=147 Identities=22% Similarity=0.372 Sum_probs=88.1
Q ss_pred Ccc-ccchhHHHHHHHhcCC-----------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhcc
Q 001979 11 KLV-GMDYRLEQIYLMLGTG-----------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTR 78 (987)
Q Consensus 11 ~~v-Gr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (987)
..| |.+++++++++.+... -...+-|.++|++|.|||-||++|++.- .+.|+. +|.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~fir----vsg-- 214 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIR----VSG-- 214 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceEEEE----ech--
Confidence 344 4688899888876432 1345678899999999999999999862 233343 221
Q ss_pred CHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh----cCCceEEEEeCCCChH--------------H--HHHHhcCC
Q 001979 79 GLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL----RHKRVLLVIDDVDEFD--------------Q--LQALAGQR 138 (987)
Q Consensus 79 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVlDdv~~~~--------------~--~~~l~~~~ 138 (987)
.++.+..+.+ +..++++.+ .+.+-+|..|.++... | .-+++..+
T Consensus 215 --selvqk~ige--------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql 278 (404)
T KOG0728|consen 215 --SELVQKYIGE--------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL 278 (404)
T ss_pred --HHHHHHHhhh--------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc
Confidence 2222332221 122222222 3567889999885421 1 22233333
Q ss_pred CCC--CCCcEEEEEeCCccccc-----ccCcCceEEcCCCCHHHHHHHHHHhhc
Q 001979 139 DWF--GLGSRIIITTRDRHLLV-----RCDVEDTYMVEKLNYNEALHLFSWKAF 185 (987)
Q Consensus 139 ~~~--~~gs~IiiTtR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 185 (987)
.-| .+.-+||..|..-.++. .-..+..++.++-+.+...+++.-+.-
T Consensus 279 dgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 279 DGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred cccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 323 24567777666444433 234667889999999888888876653
No 204
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.0071 Score=69.10 Aligned_cols=185 Identities=16% Similarity=0.187 Sum_probs=109.4
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC-CcceEEEEehHhhhhccCHHHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQF-DDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
..-+++||.+.-.+.|...+..+. -...-...|+-|+||||+||-++..+-..- . .....+-....+
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~-----------~~ePC~~C~~Ck 80 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGP-----------TAEPCGKCISCK 80 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCC-----------CCCcchhhhhhH
Confidence 345778999999999999887542 224456789999999999999998652111 1 000001011111
Q ss_pred HHHHHHhcCCCccccc----chhhHHHHHHHh--------cCCceEEEEeCCCC--hHHHHHHhcCCCCCCCCcEEEEEe
Q 001979 86 QLVSEILLDKNVKIWD----VHKGCHMIRIKL--------RHKRVLLVIDDVDE--FDQLQALAGQRDWFGLGSRIIITT 151 (987)
Q Consensus 86 ~ll~~l~~~~~~~~~~----~~~~~~~l~~~L--------~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTt 151 (987)
.+. .+...+.-. ...+++.+++.. .++.=+.|+|+|.. ...+.+++..+..-......|..|
T Consensus 81 ~I~----~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 81 EIN----EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred hhh----cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEec
Confidence 111 110000000 011222333322 24445888999966 456888888776555666777777
Q ss_pred CCcc-cccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc
Q 001979 152 RDRH-LLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 152 R~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 209 (987)
++.+ +... ....+.|.++.++.++-...+...+-......+ .+....|++..+|..
T Consensus 157 Te~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e--~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 157 TEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE--EDALSLIARAAEGSL 214 (515)
T ss_pred CCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCCh
Confidence 7654 3222 355678999999999998888777644433322 355666666666644
No 205
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.08 E-value=0.0002 Score=85.73 Aligned_cols=131 Identities=24% Similarity=0.195 Sum_probs=70.9
Q ss_pred CCCCCCEEEecCCCCC-CcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCC
Q 001979 567 DLRSLKVLNLNGCSKL-EEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRA 645 (987)
Q Consensus 567 ~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~ 645 (987)
.+|+|+.|.+.+-... ..+.....++++|..||+++++++.+ ..++++++|+.|.+.+-.....
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~-------------- 210 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESY-------------- 210 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCch--------------
Confidence 3566666666552221 12334455667777777777777666 5667777777777665332210
Q ss_pred CCCCCccccCCCCCCCcccEEecCCCCCCCCC-Cc----cccCCCCCCCEEeCCCCCCc--ccchhhhccCCCcEEecCC
Q 001979 646 NRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGA-IP----NDLGSLSALTNLTLSRNNFF--SLPASINQLSRLETLNIDY 718 (987)
Q Consensus 646 ~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~-lp----~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~ 718 (987)
.....+-++++|+.||+|........ +. +.-..||.|+.||.|++.+. .+-..+..-++|+.+.+-+
T Consensus 211 ------~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 211 ------QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred ------hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 11123455677777777766443321 11 12234777888888877665 2222334445555554443
No 206
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.07 E-value=0.0052 Score=75.54 Aligned_cols=49 Identities=20% Similarity=0.330 Sum_probs=38.8
Q ss_pred CCCccccchhHHHHHHHhcCC------C-CCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 9 SEKLVGMDYRLEQIYLMLGTG------L-DEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~------~-~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+.++|.+..++.+...+... . ....++.++|+.|+|||++|+.+++.+
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 357889999999888877531 1 123568899999999999999999976
No 207
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.06 E-value=0.0055 Score=61.29 Aligned_cols=54 Identities=20% Similarity=0.184 Sum_probs=41.3
Q ss_pred CCCccccchhHHHHHHHhcC--CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC
Q 001979 9 SEKLVGMDYRLEQIYLMLGT--GLDEARILGICGMGGIGKTTLARFVFDNISYQFD 62 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 62 (987)
-..++|.|.+.+.+.+--.. ..-..--|.+||--|.||+.|++++.+.+..+.-
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl 114 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGL 114 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCC
Confidence 36789999998887653211 1123346789999999999999999999887776
No 208
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.032 Score=61.26 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=61.6
Q ss_pred CCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCC-cccccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCC
Q 001979 115 HKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRD-RHLLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHP 190 (987)
Q Consensus 115 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 190 (987)
+++=++|+|+++.. ....+++..+..-.+++.+|++|.+ ..++.. ......+.+.+++.++..+.+.... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 34457889999774 4567777766655677776666655 455544 3445789999999999999987641 11
Q ss_pred CChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 191 TDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 191 ~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
+ ...++..++|.|.....+.
T Consensus 207 -~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 207 -D-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred -h-----HHHHHHHcCCCHHHHHHHH
Confidence 1 2335788899997554443
No 209
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.021 Score=62.75 Aligned_cols=176 Identities=15% Similarity=0.061 Sum_probs=99.7
Q ss_pred hhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC--CCcceEEEEehHhhhhccCHHHHHHHHHHHHhcC
Q 001979 17 YRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ--FDDGSSFLANVREVSQTRGLVALQEQLVSEILLD 94 (987)
Q Consensus 17 ~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~ 94 (987)
...+++.+.+..+ .-.....+.|+.|+||+|+|.+++..+-.. -+...| +.-..-+.+.. ...
T Consensus 9 ~~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~C------------g~C~sC~~~~~--g~H 73 (334)
T PRK07993 9 PDYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSC------------GHCRGCQLMQA--GTH 73 (334)
T ss_pred HHHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCC------------CCCHHHHHHHc--CCC
Confidence 3456666666543 234678899999999999999999875221 110000 00000001100 000
Q ss_pred CCccc---------ccchhhHHHHHHHh-----cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-ccc
Q 001979 95 KNVKI---------WDVHKGCHMIRIKL-----RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDR-HLL 157 (987)
Q Consensus 95 ~~~~~---------~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~-~v~ 157 (987)
.+... -..+ .+..+.+.+ .+++=++|+|+++.. ..-.+++..+..-.+++.+|++|.+. .++
T Consensus 74 PD~~~i~p~~~~~~I~id-qiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lL 152 (334)
T PRK07993 74 PDYYTLTPEKGKSSLGVD-AVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLL 152 (334)
T ss_pred CCEEEEecccccccCCHH-HHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhCh
Confidence 00000 0011 111222222 245568899999774 45667776665556677777777664 455
Q ss_pred cc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHH
Q 001979 158 VR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEIL 215 (987)
Q Consensus 158 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 215 (987)
.. ......+.+.+++.+++.+.+.... .. + .+.+..++..++|.|.....+
T Consensus 153 pTIrSRCq~~~~~~~~~~~~~~~L~~~~---~~--~--~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 153 ATLRSRCRLHYLAPPPEQYALTWLSREV---TM--S--QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred HHHHhccccccCCCCCHHHHHHHHHHcc---CC--C--HHHHHHHHHHcCCCHHHHHHH
Confidence 44 3445678999999999998886532 11 1 234678899999999644433
No 210
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.04 E-value=0.0002 Score=85.83 Aligned_cols=87 Identities=24% Similarity=0.289 Sum_probs=39.3
Q ss_pred hhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCc-ccCccCCCCCCCCEEEecCCCCCCcc------cccccC
Q 001979 519 QNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLV-SLPSSISDLRSLKVLNLNGCSKLEEV------PENLGH 591 (987)
Q Consensus 519 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~l~~c~~l~~l------p~~l~~ 591 (987)
.++++|..||++++.++.+ ..+.++++|+.|.+.+-.... .--..+.+|++|+.||+|.-.....- -+.-..
T Consensus 170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 4445555555555555544 345555555555544422211 00011334555555555553322211 011223
Q ss_pred CCCCcEeeCCCCCCC
Q 001979 592 IASLENLDLGGTAIR 606 (987)
Q Consensus 592 l~~L~~L~L~~~~i~ 606 (987)
+|+|+.||.+++.+.
T Consensus 249 LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 249 LPELRFLDCSGTDIN 263 (699)
T ss_pred CccccEEecCCcchh
Confidence 556666666666554
No 211
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.04 E-value=0.005 Score=74.23 Aligned_cols=153 Identities=17% Similarity=0.164 Sum_probs=85.0
Q ss_pred CCccccchhHHHHHHHhcCC----------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccC
Q 001979 10 EKLVGMDYRLEQIYLMLGTG----------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRG 79 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 79 (987)
.++.|.+...+++.+.+... ..-.+-|.|+|++|.||||+|+.++.+....|- .++ .+
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~----~is----~~---- 219 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF----TIS----GS---- 219 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEE----EEe----hH----
Confidence 45667776666666544321 011245889999999999999999987543331 121 10
Q ss_pred HHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH----------------HHHHHhcCCCCCC-
Q 001979 80 LVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD----------------QLQALAGQRDWFG- 142 (987)
Q Consensus 80 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~- 142 (987)
.+.... ... ........+.......+.+|++|++|... .+..++..+..+.
T Consensus 220 --~~~~~~----~g~------~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 220 --DFVEMF----VGV------GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred --HhHHhh----hcc------cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence 000000 000 00111122223334567899999986531 2334433333222
Q ss_pred -CCcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhhcc
Q 001979 143 -LGSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKAFR 186 (987)
Q Consensus 143 -~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 186 (987)
.+.-+|.||...+.+.. -..+..+.++..+.++..+++..+...
T Consensus 288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 34445557776654332 134578889999999999999887643
No 212
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.04 E-value=0.01 Score=73.84 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=38.9
Q ss_pred CCccccchhHHHHHHHhcCC-------CCCeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 10 EKLVGMDYRLEQIYLMLGTG-------LDEARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
..++|.+..++.+...+... ......+.++|+.|+|||++|+++++.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 56889999999988877531 112357889999999999999999987643
No 213
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.0045 Score=68.71 Aligned_cols=142 Identities=18% Similarity=0.133 Sum_probs=82.3
Q ss_pred CccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC--------------------cceEEEEe
Q 001979 11 KLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFD--------------------DGSSFLAN 70 (987)
Q Consensus 11 ~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~--------------------~~~~~~~~ 70 (987)
.++|-+....++..+......-...+.++|++|+||||+|.++++.+-.... ..+..+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 5678888888888888743333345899999999999999999997643221 0112221
Q ss_pred hHhhhhccC---HHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH--HHHHHhcCCCCCCCCc
Q 001979 71 VREVSQTRG---LVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD--QLQALAGQRDWFGLGS 145 (987)
Q Consensus 71 ~~~~~~~~~---~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs 145 (987)
.+.... ..+..+++........ ..++.-++++|+++... .-.++..........+
T Consensus 81 ---~s~~~~~~i~~~~vr~~~~~~~~~~-----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 81 ---PSDLRKIDIIVEQVRELAEFLSESP-----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred ---ccccCCCcchHHHHHHHHHHhccCC-----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 111111 1122222222110000 02566799999998753 3556666555556788
Q ss_pred EEEEEeCCc-cccccc-CcCceEEcCCCCH
Q 001979 146 RIIITTRDR-HLLVRC-DVEDTYMVEKLNY 173 (987)
Q Consensus 146 ~IiiTtR~~-~v~~~~-~~~~~~~l~~L~~ 173 (987)
++|++|.+. .+.... .....+++.+.+.
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCCchH
Confidence 888888743 333322 3345677766333
No 214
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0075 Score=66.79 Aligned_cols=126 Identities=23% Similarity=0.223 Sum_probs=76.0
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHH-
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMI- 109 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l- 109 (987)
.....|.+.|++|+|||+||..++.. ..|+ .+-.++ ....-++. .......+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FP-FvKiiS----pe~miG~s--------------------EsaKc~~i~ 588 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFP-FVKIIS----PEDMIGLS--------------------ESAKCAHIK 588 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCC-eEEEeC----hHHccCcc--------------------HHHHHHHHH
Confidence 35677889999999999999999865 7788 332222 10111111 11122223
Q ss_pred ---HHHhcCCceEEEEeCCCChHH------------HHHHhc---CCCCCCCCcEEEEEeCCcccccccCc----CceEE
Q 001979 110 ---RIKLRHKRVLLVIDDVDEFDQ------------LQALAG---QRDWFGLGSRIIITTRDRHLLVRCDV----EDTYM 167 (987)
Q Consensus 110 ---~~~L~~k~~LlVlDdv~~~~~------------~~~l~~---~~~~~~~gs~IiiTtR~~~v~~~~~~----~~~~~ 167 (987)
.+.-++.--.||+||++..-+ ++++.- ..+..+..--|+-||....++..++. ...|.
T Consensus 589 k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~ 668 (744)
T KOG0741|consen 589 KIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIH 668 (744)
T ss_pred HHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheee
Confidence 333455667999999966543 333332 22322333345557777888887753 36889
Q ss_pred cCCCCH-HHHHHHHHHh
Q 001979 168 VEKLNY-NEALHLFSWK 183 (987)
Q Consensus 168 l~~L~~-~ea~~Lf~~~ 183 (987)
|+.++. ++..+.++..
T Consensus 669 Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 669 VPNLTTGEQLLEVLEEL 685 (744)
T ss_pred cCccCchHHHHHHHHHc
Confidence 999887 6777776654
No 215
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.01 E-value=0.0019 Score=67.32 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=37.5
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEe
Q 001979 21 QIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLAN 70 (987)
Q Consensus 21 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~ 70 (987)
.|-++|..+-....++.|+|++|+|||++|.+++........ .++|++.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~-~v~yi~~ 59 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGK-KVIYIDT 59 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEC
Confidence 345556544345689999999999999999999987755555 7888873
No 216
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0036 Score=74.42 Aligned_cols=156 Identities=14% Similarity=0.184 Sum_probs=89.4
Q ss_pred CCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-----CCcceEEEEehHhhhhccCHHHH
Q 001979 9 SEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ-----FDDGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l 83 (987)
-+.++||+.+++++.+.|.....+..+ ++|.+|+|||++|.-++.++... ..+..++--++
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~------------ 234 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL------------ 234 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH------------
Confidence 478999999999999999875443333 58999999999999999975322 12122222111
Q ss_pred HHHHHHHHhcCCCcccccchhhHHHHHHHh-cCCceEEEEeCCCCh----------HHHHHHhcCCCCCCCCcEEEEEeC
Q 001979 84 QEQLVSEILLDKNVKIWDVHKGCHMIRIKL-RHKRVLLVIDDVDEF----------DQLQALAGQRDWFGLGSRIIITTR 152 (987)
Q Consensus 84 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~IiiTtR 152 (987)
..+..+..... +.++..+.+.+.+ +.+++.+++|.+... .+...++.+....|.--.|=.||-
T Consensus 235 -----g~LvAGakyRG-eFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~ 308 (786)
T COG0542 235 -----GSLVAGAKYRG-EFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTL 308 (786)
T ss_pred -----HHHhccccccC-cHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccH
Confidence 11122222222 3333333333333 345899999997432 122222222221222234445665
Q ss_pred Ccc---cccc---cCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 153 DRH---LLVR---CDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 153 ~~~---v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
++. +-.. -...+.+.|...+.+++.++++-..
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 531 1111 1344688999999999999987543
No 217
>PRK04132 replication factor C small subunit; Provisional
Probab=97.00 E-value=0.015 Score=70.84 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=96.7
Q ss_pred EEc--CCcchHHHHHHHHHHHh-hcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhc
Q 001979 38 ICG--MGGIGKTTLARFVFDNI-SYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLR 114 (987)
Q Consensus 38 I~G--~gGiGKTtLA~~v~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~ 114 (987)
+.| |.|+||||+|.++++++ .+.+.....-++ .+...++..+. +++......... -.
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgid~IR-~iIk~~a~~~~~---------------~~ 628 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELN----ASDERGINVIR-EKVKEFARTKPI---------------GG 628 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccHHHHH-HHHHHHHhcCCc---------------CC
Confidence 347 88999999999999986 333332345555 44334444333 333332211100 01
Q ss_pred CCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCcc-cccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCC
Q 001979 115 HKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDRH-LLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHP 190 (987)
Q Consensus 115 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 190 (987)
.+.-++|+|+++.. ++..++...+......+++|.+|.+.. +... ......+++.+++.++..+.+.+.+-.....
T Consensus 629 ~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~ 708 (846)
T PRK04132 629 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 708 (846)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 24579999999885 456677766655556778877776653 3222 2345789999999999988887665432222
Q ss_pred CChHHHHHHHHHHHhCCCchhHHH
Q 001979 191 TDGYFELSHSMVNYADGLPLALEI 214 (987)
Q Consensus 191 ~~~~~~~~~~i~~~~~G~PLal~~ 214 (987)
. ..+....|++.++|.+..+..
T Consensus 709 i--~~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 709 L--TEEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred C--CHHHHHHHHHHcCCCHHHHHH
Confidence 1 135788999999998854443
No 218
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.99 E-value=0.0077 Score=58.92 Aligned_cols=144 Identities=17% Similarity=0.138 Sum_probs=73.1
Q ss_pred ccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhc
Q 001979 14 GMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILL 93 (987)
Q Consensus 14 Gr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~ 93 (987)
|-+..++.+...+..+ .-...+.++|+.|+||+|+|+.++..+-..-.... . .+.....+.+... .
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~---~--------c~~c~~c~~~~~~--~ 66 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNED---P--------CGECRSCRRIEEG--N 66 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT-------------SSSHHHHHHHTT---
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC---C--------CCCCHHHHHHHhc--c
Confidence 5567778888888653 23356789999999999999999997522211000 0 0000000111100 0
Q ss_pred CCCccc---------ccchhhHHHHHHHh-----cCCceEEEEeCCCC--hHHHHHHhcCCCCCCCCcEEEEEeCCcc-c
Q 001979 94 DKNVKI---------WDVHKGCHMIRIKL-----RHKRVLLVIDDVDE--FDQLQALAGQRDWFGLGSRIIITTRDRH-L 156 (987)
Q Consensus 94 ~~~~~~---------~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTtR~~~-v 156 (987)
..+... ... +.+..+.+.+ .+++=++|+||++. .+...+++..+..-..++++|++|++.. +
T Consensus 67 ~~d~~~~~~~~~~~~i~i-~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~i 145 (162)
T PF13177_consen 67 HPDFIIIKPDKKKKSIKI-DQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKI 145 (162)
T ss_dssp CTTEEEEETTTSSSSBSH-HHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS
T ss_pred CcceEEEecccccchhhH-HHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHC
Confidence 000000 001 1111222222 23455889999987 3456677666655567899999888764 3
Q ss_pred ccc-cCcCceEEcCCCC
Q 001979 157 LVR-CDVEDTYMVEKLN 172 (987)
Q Consensus 157 ~~~-~~~~~~~~l~~L~ 172 (987)
... ......+.+++++
T Consensus 146 l~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 146 LPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -HHHHTTSEEEEE----
T ss_pred hHHHHhhceEEecCCCC
Confidence 332 2344566666553
No 219
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0092 Score=67.39 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=78.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHH-HHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCH-MIRI 111 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~-~l~~ 111 (987)
..-|.+||++|.|||-||++|+++-+-.|= . +- + .++++....+ .+..+. .+++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFi------s----VK---G-PELlNkYVGE-----------SErAVR~vFqR 599 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFI------S----VK---G-PELLNKYVGE-----------SERAVRQVFQR 599 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceE------e----ec---C-HHHHHHHhhh-----------HHHHHHHHHHH
Confidence 345789999999999999999998655553 3 11 1 1222222211 112222 2333
Q ss_pred HhcCCceEEEEeCCCCh-------------HHHHHHhcCCCCC--CCCcEEEEEeCCcccccc-----cCcCceEEcCCC
Q 001979 112 KLRHKRVLLVIDDVDEF-------------DQLQALAGQRDWF--GLGSRIIITTRDRHLLVR-----CDVEDTYMVEKL 171 (987)
Q Consensus 112 ~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L 171 (987)
.-...+++|.+|.+|.. ..+.+++..+.-. ..|.-||-.|..+.+... -..+...-|..-
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 33468899999998653 1356666655422 245556655554443322 245678889999
Q ss_pred CHHHHHHHHHHhhc
Q 001979 172 NYNEALHLFSWKAF 185 (987)
Q Consensus 172 ~~~ea~~Lf~~~a~ 185 (987)
+.+|-.++++...-
T Consensus 680 n~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 680 NAEERVAILKTITK 693 (802)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999988874
No 220
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.96 E-value=0.00023 Score=71.78 Aligned_cols=18 Identities=6% Similarity=0.108 Sum_probs=10.3
Q ss_pred cccCCCCcEEeCcCCCCC
Q 001979 486 IGLLKRLKVLNMKECIRI 503 (987)
Q Consensus 486 i~~l~~L~~L~L~~c~~l 503 (987)
+..+..++.++|+||+.-
T Consensus 26 l~~~d~~~evdLSGNtig 43 (388)
T COG5238 26 LEMMDELVEVDLSGNTIG 43 (388)
T ss_pred HHhhcceeEEeccCCccc
Confidence 334566666666666443
No 221
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.95 E-value=0.0035 Score=64.51 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=29.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.++|.|..|.||||+++.+......+|. .++.+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~-~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFD-HIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCC-EEEEEe
Confidence 4669999999999999999999999997 666554
No 222
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.94 E-value=0.037 Score=61.14 Aligned_cols=195 Identities=17% Similarity=0.102 Sum_probs=110.9
Q ss_pred cchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHH-HHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHH--
Q 001979 15 MDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLA-RFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEI-- 91 (987)
Q Consensus 15 r~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA-~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l-- 91 (987)
|...+++|..||....+ ..|.|.||-|.||+.|+ .++.+. .+ .+..++|-.-+ ...+-..+.+.+.+++
T Consensus 1 R~e~~~~L~~wL~e~~~--TFIvV~GPrGSGK~elV~d~~L~~----r~-~vL~IDC~~i~-~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN--TFIVVQGPRGSGKRELVMDHVLKD----RK-NVLVIDCDQIV-KARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcCCC--eEEEEECCCCCCccHHHHHHHHhC----CC-CEEEEEChHhh-hccChHHHHHHHHHhcCC
Confidence 56788999999986433 58889999999999999 555543 22 35555433221 1222222233332221
Q ss_pred ---------------------hcCCCcccccchhh--------HHHHHH-------------------Hh---cCCceEE
Q 001979 92 ---------------------LLDKNVKIWDVHKG--------CHMIRI-------------------KL---RHKRVLL 120 (987)
Q Consensus 92 ---------------------~~~~~~~~~~~~~~--------~~~l~~-------------------~L---~~k~~Ll 120 (987)
.+.+..-..+.+.. ...+++ +| -.++-+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 11111000111111 111111 11 1236799
Q ss_pred EEeCCCCh-----------HHHHHHhcCCCCCCCCcEEEEEeCCcccccc----c--CcCceEEcCCCCHHHHHHHHHHh
Q 001979 121 VIDDVDEF-----------DQLQALAGQRDWFGLGSRIIITTRDRHLLVR----C--DVEDTYMVEKLNYNEALHLFSWK 183 (987)
Q Consensus 121 VlDdv~~~-----------~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~----~--~~~~~~~l~~L~~~ea~~Lf~~~ 183 (987)
|+|++... .+|.+.+.. .+=.+||++|-+...... + .+.+.+.+...+.+-|.++...+
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 99998432 234444333 456789999988644332 2 34467889999999999999988
Q ss_pred hccCCCC-------------C-----ChHHHHHHHHHHHhCCCchhHHHHhhhhcC
Q 001979 184 AFRKGHP-------------T-----DGYFELSHSMVNYADGLPLALEILGSFLFA 221 (987)
Q Consensus 184 a~~~~~~-------------~-----~~~~~~~~~i~~~~~G~PLal~~l~~~L~~ 221 (987)
.-..... . ..........++..||--.=|..+++.++.
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 7443110 0 123345566777778877777777777653
No 223
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0043 Score=73.74 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=74.6
Q ss_pred CCccccchhHHHHHHHhcCC-------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHH
Q 001979 10 EKLVGMDYRLEQIYLMLGTG-------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVA 82 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 82 (987)
..++|.+..++.+.+.+... ..........||.|+|||-||++++..+-..-+ .-+-++ +++...++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~-aliR~D-MSEy~EkH---- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQ-ALIRID-MSEYMEKH---- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCc-cceeec-hHHHHHHH----
Confidence 67899999999998877431 234567888999999999999999997643333 344443 33333322
Q ss_pred HHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCce-EEEEeCCCC--hHHHHHHhcCCC
Q 001979 83 LQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRV-LLVIDDVDE--FDQLQALAGQRD 139 (987)
Q Consensus 83 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~~--~~~~~~l~~~~~ 139 (987)
-.+.+.+... .....++ -..+-+..++++| +|.||+|+. .+.++-++..+.
T Consensus 565 ----sVSrLIGaPP-GYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 565 ----SVSRLIGAPP-GYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred ----HHHHHhCCCC-CCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 2333333222 2112222 3356677778877 889999965 555666666554
No 224
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.93 E-value=0.0037 Score=76.44 Aligned_cols=159 Identities=16% Similarity=0.173 Sum_probs=86.4
Q ss_pred CCccccchhHHHHHHHhcC----CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 10 EKLVGMDYRLEQIYLMLGT----GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
++.+|.++-.+++.++|.. +.....+++++|++|+||||+|+.++..+...|- ... +..+ .+...+..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~-~i~-~~~~------~d~~~i~g 393 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYV-RMA-LGGV------RDEAEIRG 393 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE-EEE-cCCC------CCHHHhcc
Confidence 5688999999999887763 1124568999999999999999999987654443 111 1111 11111100
Q ss_pred HHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChHH------HHHHhcCCCCC--------------C-CC
Q 001979 86 QLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFDQ------LQALAGQRDWF--------------G-LG 144 (987)
Q Consensus 86 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~------~~~l~~~~~~~--------------~-~g 144 (987)
.- ....+ .......+.+.. .....-+|+||+++.... ..++...+... . .+
T Consensus 394 ~~-~~~~g------~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 394 HR-RTYIG------SMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred ch-hccCC------CCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 00 00000 001111222222 122345788999965321 24444433210 0 23
Q ss_pred cEEEEEeCCcccccc-cCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 145 SRIIITTRDRHLLVR-CDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 145 s~IiiTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
..+|.|+.+..+... .+...++++.+++.+|-.++...+.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 334445544332221 1333578999999999999988776
No 225
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.92 E-value=0.0037 Score=68.27 Aligned_cols=105 Identities=11% Similarity=0.113 Sum_probs=60.2
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccc
Q 001979 21 QIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIW 100 (987)
Q Consensus 21 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~ 100 (987)
++.+.+..- +..+.++|+|.+|+|||||++.+++.+..+.++..+++..+.+ +.....++.+.+...+.........
T Consensus 122 RvID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE--R~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 122 RVVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE--RPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC--CCCCHHHHHHHHhhhEEeecCCCCH
Confidence 344544432 2345678999999999999999999887665424333333322 2345667777776654332211111
Q ss_pred ----cchhhHHHHHHHh--cCCceEEEEeCCCCh
Q 001979 101 ----DVHKGCHMIRIKL--RHKRVLLVIDDVDEF 128 (987)
Q Consensus 101 ----~~~~~~~~l~~~L--~~k~~LlVlDdv~~~ 128 (987)
........+.+++ ++++++||+|++...
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 0111111222222 479999999998543
No 226
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.90 E-value=0.0017 Score=65.27 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=59.8
Q ss_pred ccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHH-h-hcCCCcceEEEEehHhhhhccCH--HHH------
Q 001979 14 GMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDN-I-SYQFDDGSSFLANVREVSQTRGL--VAL------ 83 (987)
Q Consensus 14 Gr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~~~~~~~~~~~~~~~~~--~~l------ 83 (987)
.+..+-+...+.|. +..+|.+.|++|.|||.||.+.+.+ + ..+|+ ..++.....++.+.-+. -.+
T Consensus 4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~-kiii~Rp~v~~~~~lGflpG~~~eK~~p 78 (205)
T PF02562_consen 4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYD-KIIITRPPVEAGEDLGFLPGDLEEKMEP 78 (205)
T ss_dssp --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S-EEEEEE-S--TT----SS---------T
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCc-EEEEEecCCCCccccccCCCCHHHHHHH
Confidence 34445555555554 3458999999999999999999864 2 46677 77776544332221110 011
Q ss_pred ----HHHHHHHHhcCCCcccccchhhHHHHH----------HHhcCC---ceEEEEeCCCC--hHHHHHHhcCCCCCCCC
Q 001979 84 ----QEQLVSEILLDKNVKIWDVHKGCHMIR----------IKLRHK---RVLLVIDDVDE--FDQLQALAGQRDWFGLG 144 (987)
Q Consensus 84 ----~~~ll~~l~~~~~~~~~~~~~~~~~l~----------~~L~~k---~~LlVlDdv~~--~~~~~~l~~~~~~~~~g 144 (987)
..+.+..+.. ....+.+. ..++++ ..+||+|++.+ .+++..+... .+.|
T Consensus 79 ~~~p~~d~l~~~~~---------~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~ 146 (205)
T PF02562_consen 79 YLRPIYDALEELFG---------KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEG 146 (205)
T ss_dssp TTHHHHHHHTTTS----------TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT
T ss_pred HHHHHHHHHHHHhC---------hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCC
Confidence 1111111110 01111111 223443 46999999965 5677777665 4789
Q ss_pred cEEEEEeCCc
Q 001979 145 SRIIITTRDR 154 (987)
Q Consensus 145 s~IiiTtR~~ 154 (987)
|+||++=-..
T Consensus 147 skii~~GD~~ 156 (205)
T PF02562_consen 147 SKIIITGDPS 156 (205)
T ss_dssp -EEEEEE---
T ss_pred cEEEEecCce
Confidence 9999985543
No 227
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.90 E-value=0.0062 Score=71.61 Aligned_cols=47 Identities=23% Similarity=0.399 Sum_probs=38.2
Q ss_pred CCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 9 SEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.++++|.+..++.+...+... ....|.|+|++|+|||++|+.+++..
T Consensus 64 f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999999877543 23467799999999999999998753
No 228
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.90 E-value=0.0028 Score=62.25 Aligned_cols=34 Identities=29% Similarity=0.298 Sum_probs=27.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
++.|+|++|+||||+|..++.....+-. .++|++
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~-~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGG-KVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCC-EEEEEE
Confidence 3689999999999999999997765434 666765
No 229
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.017 Score=66.47 Aligned_cols=159 Identities=17% Similarity=0.137 Sum_probs=85.3
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIK 112 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 112 (987)
...|.|.|+.|+|||+||+++++.+...-...+.++++- ......+..+|+.+- ..+-..
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs--~l~~~~~e~iQk~l~------------------~vfse~ 490 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCS--TLDGSSLEKIQKFLN------------------NVFSEA 490 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEech--hccchhHHHHHHHHH------------------HHHHHH
Confidence 357889999999999999999998763322133344311 111122333333222 234455
Q ss_pred hcCCceEEEEeCCCChH--------H-----------HHHHhcCCCCCCCCcE--EEEEeCCcccccc-----cCcCceE
Q 001979 113 LRHKRVLLVIDDVDEFD--------Q-----------LQALAGQRDWFGLGSR--IIITTRDRHLLVR-----CDVEDTY 166 (987)
Q Consensus 113 L~~k~~LlVlDdv~~~~--------~-----------~~~l~~~~~~~~~gs~--IiiTtR~~~v~~~-----~~~~~~~ 166 (987)
+...+-+|||||++... | +.++...+. ..+.+ +|.|....+.... .-.....
T Consensus 491 ~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~--~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~ 568 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL--KRNRKIAVIATGQELQTLNPLLVSPLLFQIVI 568 (952)
T ss_pred HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH--ccCcEEEEEEechhhhhcChhhcCccceEEEE
Confidence 67889999999985421 0 111111111 23343 4444444332222 1233467
Q ss_pred EcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCC-chhHHHH
Q 001979 167 MVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGL-PLALEIL 215 (987)
Q Consensus 167 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~l 215 (987)
.++.+...+-.++++... ..+.. ....+...-+..+|+|. |.-++++
T Consensus 569 ~L~ap~~~~R~~IL~~~~-s~~~~-~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 569 ALPAPAVTRRKEILTTIF-SKNLS-DITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred ecCCcchhHHHHHHHHHH-Hhhhh-hhhhHHHHHHHHhcCCccchhHHHH
Confidence 889999988888876543 33321 11223333377777663 4434433
No 230
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.87 E-value=0.0052 Score=64.49 Aligned_cols=175 Identities=18% Similarity=0.150 Sum_probs=98.9
Q ss_pred CCCCccccchhHHHHHHHhcCC--CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhh-hccCHHHHH
Q 001979 8 ASEKLVGMDYRLEQIYLMLGTG--LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVS-QTRGLVALQ 84 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~l~ 84 (987)
+-..++|-.++.+++.+++... -++..-|.|+||.|.|||+|......+ .+.+.....-+..-++.. ++..+..+.
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3457899999999998888541 123346779999999999998877776 334432333333222221 233445555
Q ss_pred HHHHHHHhcCCCcccccchhhHHHHHHHhc------CCceEEEEeCCCChHH------HHHHhcCC-CCCCCCcEEEEEe
Q 001979 85 EQLVSEILLDKNVKIWDVHKGCHMIRIKLR------HKRVLLVIDDVDEFDQ------LQALAGQR-DWFGLGSRIIITT 151 (987)
Q Consensus 85 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~------~k~~LlVlDdv~~~~~------~~~l~~~~-~~~~~gs~IiiTt 151 (987)
+++..++... .....+..+....+...|+ +.++++|+|++|-..+ +-.+...- ....|-+-|-+||
T Consensus 101 rql~~e~~~~-~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 101 RQLALELNRI-VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHhhh-heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 5555553222 2223344455555655554 2468999998876322 22232221 1234566777899
Q ss_pred CCcc-------cccccCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 152 RDRH-------LLVRCDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 152 R~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
|-.- |-.....-.++-++.+..++..++++.-.
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9541 22222222355666666666666665543
No 231
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.86 E-value=0.001 Score=63.30 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=33.4
Q ss_pred cccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 13 VGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 13 vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
||....++++.+.+..-......|.|+|..|+||+++|+.++..-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 6788888888877754223345688999999999999999988543
No 232
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.86 E-value=0.0051 Score=76.19 Aligned_cols=50 Identities=26% Similarity=0.297 Sum_probs=39.5
Q ss_pred CCccccchhHHHHHHHhcC-------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 10 EKLVGMDYRLEQIYLMLGT-------GLDEARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~-------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
..++|.+..++.+.+.+.. ......++.++|+.|+|||.+|++++..+-.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 5789999999998887742 1123457899999999999999999987643
No 233
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.0037 Score=65.88 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=29.5
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...-+.++|.+|+|||.||.++.+++. +....+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEE
Confidence 445688999999999999999999987 4332566665
No 234
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0081 Score=69.11 Aligned_cols=158 Identities=20% Similarity=0.224 Sum_probs=88.7
Q ss_pred CCccccchhHHHHHHHhcC----CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 10 EKLVGMDYRLEQIYLMLGT----GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
++=+|+++-.+++.+.+.- ++-+.++++.+||+|+|||.+|+.++..+-.+|- ++-+--+.++++ +
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf--RfSvGG~tDvAe---I----- 480 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF--RFSVGGMTDVAE---I----- 480 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE--EEeccccccHHh---h-----
Confidence 4567999999999988854 3346689999999999999999999998876664 221211111111 1
Q ss_pred HHHHHHhcCCCccccc-chhhHHHHHHHhcCCceEEEEeCCCChH------HHHHHhcCCCCCC-------------CCc
Q 001979 86 QLVSEILLDKNVKIWD-VHKGCHMIRIKLRHKRVLLVIDDVDEFD------QLQALAGQRDWFG-------------LGS 145 (987)
Q Consensus 86 ~ll~~l~~~~~~~~~~-~~~~~~~l~~~L~~k~~LlVlDdv~~~~------~~~~l~~~~~~~~-------------~gs 145 (987)
-+....-... ....++-+ ...+-..-|+.||.||..- .-.+++..+..-. .=|
T Consensus 481 ------kGHRRTYVGAMPGkiIq~L-K~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 481 ------KGHRRTYVGAMPGKIIQCL-KKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred ------cccceeeeccCChHHHHHH-HhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchh
Confidence 1111000001 11111112 2233466789999996532 1222222221100 136
Q ss_pred EEE-EEeCCc-cccc--ccCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 146 RII-ITTRDR-HLLV--RCDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 146 ~Ii-iTtR~~-~v~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
+|+ |.|-+. .... -.+...++++.+...+|-.++-.++.
T Consensus 554 kVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred heEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 665 344332 1111 12344689999999999988887775
No 235
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.82 E-value=0.003 Score=66.28 Aligned_cols=94 Identities=26% Similarity=0.307 Sum_probs=56.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCc---ccccc------
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNV---KIWDV------ 102 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---~~~~~------ 102 (987)
+-+.++|.|.+|.||||||+.+++.++.+|+ ..+++..+.+-. ....++.+++...-...... ...+.
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~-~~~V~~~iGer~--~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHG-GYSVFAGVGERT--REGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCC-CEEEEEEeccCc--HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 4578999999999999999999999988888 556665554422 23344444443321111000 00010
Q ss_pred --hhhHHHHHHHh---cCCceEEEEeCCCCh
Q 001979 103 --HKGCHMIRIKL---RHKRVLLVIDDVDEF 128 (987)
Q Consensus 103 --~~~~~~l~~~L---~~k~~LlVlDdv~~~ 128 (987)
....-.+.+++ +++.+|+++||+-..
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 01112233444 388999999998553
No 236
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.007 Score=63.08 Aligned_cols=80 Identities=23% Similarity=0.326 Sum_probs=46.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhh----cCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNIS----YQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHM 108 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 108 (987)
.|+|.++||+|.|||+|.++++++++ ++|. ...-+. . +-..+....+++ . ..-+....+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~-~~~liE----i----nshsLFSKWFsE----S---gKlV~kmF~k 240 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYY-KGQLIE----I----NSHSLFSKWFSE----S---GKLVAKMFQK 240 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccc-cceEEE----E----ehhHHHHHHHhh----h---hhHHHHHHHH
Confidence 48999999999999999999999753 3444 333332 1 111122222221 1 1122334455
Q ss_pred HHHHhcCCc--eEEEEeCCCCh
Q 001979 109 IRIKLRHKR--VLLVIDDVDEF 128 (987)
Q Consensus 109 l~~~L~~k~--~LlVlDdv~~~ 128 (987)
|++.+..+. +.+.+|.|+..
T Consensus 241 I~ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 241 IQELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHHHHhCCCcEEEEEeHHHHHH
Confidence 666666554 56778998553
No 237
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.81 E-value=0.036 Score=64.06 Aligned_cols=198 Identities=14% Similarity=0.136 Sum_probs=116.2
Q ss_pred CCCCccccchhHHHHHHHhcC--CC-CCeEEEEEEcCCcchHHHHHHHHHHHhh--------cCCCcceEEEEehHhhhh
Q 001979 8 ASEKLVGMDYRLEQIYLMLGT--GL-DEARILGICGMGGIGKTTLARFVFDNIS--------YQFDDGSSFLANVREVSQ 76 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~--~~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~--------~~f~~~~~~~~~~~~~~~ 76 (987)
+++.+-+|+.+..+|...+.. .. .....+.|.|.+|.|||..+..|.+.+. ..|+ .+.++ .-.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~--yveIN----gm~ 467 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD--YVEIN----GLR 467 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc--EEEEc----cee
Confidence 567788999999999988854 12 2345899999999999999999998643 1243 44454 223
Q ss_pred ccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhc-----CCceEEEEeCCCChHH--HHHHhcCCCCC-CCCcEEE
Q 001979 77 TRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLR-----HKRVLLVIDDVDEFDQ--LQALAGQRDWF-GLGSRII 148 (987)
Q Consensus 77 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~~~~--~~~l~~~~~~~-~~gs~Ii 148 (987)
-....+++..|..++..... .+....+.+..+.. .+..+|++|++|..-. -+-+...+.|- .++|+++
T Consensus 468 l~~~~~~Y~~I~~~lsg~~~----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLv 543 (767)
T KOG1514|consen 468 LASPREIYEKIWEALSGERV----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLV 543 (767)
T ss_pred ecCHHHHHHHHHHhcccCcc----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceE
Confidence 34567777788777544332 23344445555553 4568999999866422 11122223333 4788876
Q ss_pred EEeCCcc------cc-----cccCcCceEEcCCCCHHHHHHHHHHhhccCCCC-CChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 149 ITTRDRH------LL-----VRCDVEDTYMVEKLNYNEALHLFSWKAFRKGHP-TDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 149 iTtR~~~------v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
|-+=... ++ ..+ .-..+...+-+.++-.++...+.-+...- ....+-++++|+.-.|-.-.|+.+.-
T Consensus 544 vi~IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 544 VIAIANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred EEEecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 6443211 11 111 12456777888888888887665333211 22233345555555555555554443
No 238
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.80 E-value=0.0037 Score=65.78 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=34.5
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC------CCcceEEEE
Q 001979 21 QIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ------FDDGSSFLA 69 (987)
Q Consensus 21 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~~ 69 (987)
.+.++|..+-....++.|.|++|+|||++|.+++...... .. .++|++
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~-~viyi~ 60 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEG-KAVYID 60 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCc-cEEEEe
Confidence 3444554444456899999999999999999998653222 24 788887
No 239
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.76 E-value=0.0039 Score=64.69 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=37.1
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 20 EQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 20 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
..|..+|..+-....++.|.|.+|+||||+|.+++.....+-. .++|++
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~-~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGK-KVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEEEE
Confidence 4455666544455689999999999999999999987655544 677875
No 240
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.76 E-value=0.0071 Score=59.40 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=32.9
Q ss_pred ccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 12 LVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 12 ~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
+||.+..++++.+.+..-......|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 578888888888877542222245669999999999999999984
No 241
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.75 E-value=0.0098 Score=72.28 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=39.3
Q ss_pred CCccccchhHHHHHHHhcCC-------CCCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 10 EKLVGMDYRLEQIYLMLGTG-------LDEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
..+||.+..++.|.+.+... ......+.++|++|+|||++|+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999998877521 12245788999999999999999998773
No 242
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.74 E-value=0.0026 Score=61.97 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=16.1
Q ss_pred CceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCC
Q 001979 421 RLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPD 461 (987)
Q Consensus 421 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~ 461 (987)
+...++|++|.+..++ .+..+++|.+|.|++|.+...-|.
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~ 82 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPD 82 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccc
Confidence 3334444444444331 233344444444444444433333
No 243
>PRK08118 topology modulation protein; Reviewed
Probab=96.73 E-value=0.0011 Score=65.16 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=22.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
+.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999999864
No 244
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.73 E-value=0.00026 Score=83.55 Aligned_cols=34 Identities=32% Similarity=0.332 Sum_probs=19.1
Q ss_pred CCCCCEEecCCCCCCCCC---CCCCCCCcccEEeccC
Q 001979 442 MRHLKFIKLSHSVHLTKT---PDFTGVPKLERLVLDG 475 (987)
Q Consensus 442 l~~L~~L~Ls~~~~~~~~---~~~~~l~~L~~L~L~~ 475 (987)
+++|+.|.+..+...... +....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 566666666666544431 2245566666666665
No 245
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.73 E-value=0.0012 Score=71.71 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=41.3
Q ss_pred CCccccchhHHHHHHHhcCC----CCCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 10 EKLVGMDYRLEQIYLMLGTG----LDEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~----~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
+.++|.++.++++.+++... ....++++|+|++|.||||||+++++.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 37999999999999888542 23458899999999999999999999764
No 246
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.73 E-value=0.0056 Score=66.37 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=29.4
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
..+-+.|+|..|+|||.||.++++.+..+-. .+.|+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~-~v~~~~ 191 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGV-SSTLLH 191 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CEEEEE
Confidence 3467889999999999999999998765433 466665
No 247
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.73 E-value=0.0016 Score=61.09 Aligned_cols=41 Identities=29% Similarity=0.372 Sum_probs=32.9
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcC-CCcceEEEEehHhh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQ-FDDGSSFLANVREV 74 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~ 74 (987)
.-|+|.||+|+||||+++.+.+.++.. |..+.+|..-+++.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~g 47 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREG 47 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecC
Confidence 468899999999999999999988776 77566666655543
No 248
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.72 E-value=0.0027 Score=65.42 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=34.9
Q ss_pred HhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 25 MLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 25 ~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
+|..+-...+++.|+|++|+|||++|.+++........ .++|++
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~-~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGK-KVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEE
Confidence 44433345689999999999999999999987655555 788987
No 249
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.72 E-value=0.043 Score=60.88 Aligned_cols=46 Identities=13% Similarity=0.248 Sum_probs=37.7
Q ss_pred cchhHHHHHHHhcCCC-CCeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 15 MDYRLEQIYLMLGTGL-DEARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 15 r~~~~~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
|+.-.+.+.+.+.... ....+|+|.|.=|+||||+.+.+.++++..
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3455677778787543 567899999999999999999999988776
No 250
>PRK04296 thymidine kinase; Provisional
Probab=96.70 E-value=0.003 Score=63.67 Aligned_cols=112 Identities=21% Similarity=0.106 Sum_probs=61.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcC-CCcccccchhhHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLD-KNVKIWDVHKGCHMIRIK 112 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~~~~~~~~~~~~~~l~~~ 112 (987)
.++.|+|+.|.||||+|..++.+...+.. .+.++. .......+.. .+.+++... .........+....+++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~-~v~i~k--~~~d~~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGM-KVLVFK--PAIDDRYGEG----KVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCC-eEEEEe--ccccccccCC----cEecCCCCcccceEeCChHHHHHHHHh-
Confidence 57889999999999999999998766544 444442 0001111111 222221100 00011122333334444
Q ss_pred hcCCceEEEEeCCCC--hHHHHHHhcCCCCCCCCcEEEEEeCCcc
Q 001979 113 LRHKRVLLVIDDVDE--FDQLQALAGQRDWFGLGSRIIITTRDRH 155 (987)
Q Consensus 113 L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTtR~~~ 155 (987)
..++.-+||+|.+.- .+++.++...+. ..|..||+|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 233556999999854 344554444322 46889999999853
No 251
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.69 E-value=0.0036 Score=63.21 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=27.8
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
++|.++|+.|+||||.+.+++.+.+.+ ...+..+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis 36 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALIS 36 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccceeec
Confidence 689999999999999999999887666 42566665
No 252
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.013 Score=65.11 Aligned_cols=148 Identities=22% Similarity=0.231 Sum_probs=83.6
Q ss_pred CCccccchh---HHHHHHHhcCC-------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccC
Q 001979 10 EKLVGMDYR---LEQIYLMLGTG-------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRG 79 (987)
Q Consensus 10 ~~~vGr~~~---~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 79 (987)
+++-|.|+. ++++.+.|... ..=.+-|.++|++|.|||-||++++-+.. ..+|...-. .
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~-----VPFF~~sGS------E 372 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG-----VPFFYASGS------E 372 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC-----CCeEecccc------c
Confidence 556677654 55555566432 12246788999999999999999986532 222221111 1
Q ss_pred HHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh----cCCceEEEEeCCCCh-------------HHHHHHhcCCCCCC
Q 001979 80 LVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL----RHKRVLLVIDDVDEF-------------DQLQALAGQRDWFG 142 (987)
Q Consensus 80 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~~ 142 (987)
.. +++ +..++..+++.+ +.-+++|.+|.+|.. ..+.+++..+.-|.
T Consensus 373 Fd----Em~-------------VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~ 435 (752)
T KOG0734|consen 373 FD----EMF-------------VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK 435 (752)
T ss_pred hh----hhh-------------hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcC
Confidence 11 111 112223333332 457899999998542 23677777776665
Q ss_pred CCcEEEE--EeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhhc
Q 001979 143 LGSRIII--TTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKAF 185 (987)
Q Consensus 143 ~gs~Iii--TtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~ 185 (987)
...-||| .|.-++.+.. -..+..+.|+.-+..--.+++..+.-
T Consensus 436 qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ 485 (752)
T KOG0734|consen 436 QNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLS 485 (752)
T ss_pred cCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHh
Confidence 4433333 3443333222 13456777777777777777777763
No 253
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.01 Score=69.90 Aligned_cols=134 Identities=19% Similarity=0.183 Sum_probs=78.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI 111 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 111 (987)
..+.+.++|++|.|||.||+++++.....|- . +. . .. ++....+. ......+....
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi------~----v~---~-~~----l~sk~vGe------sek~ir~~F~~ 330 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFI------S----VK---G-SE----LLSKWVGE------SEKNIRELFEK 330 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEE------E----ee---C-HH----Hhccccch------HHHHHHHHHHH
Confidence 4568899999999999999999997654443 1 00 0 01 11110100 01111222333
Q ss_pred HhcCCceEEEEeCCCCh-------------HHHHHHhcCCCCCCCC--cEEEEEeCCcccccc-----cCcCceEEcCCC
Q 001979 112 KLRHKRVLLVIDDVDEF-------------DQLQALAGQRDWFGLG--SRIIITTRDRHLLVR-----CDVEDTYMVEKL 171 (987)
Q Consensus 112 ~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~~~g--s~IiiTtR~~~v~~~-----~~~~~~~~l~~L 171 (987)
..+..+..|.+|+++.. .....++..+...... ..||-||..+..... ...+..+.++.-
T Consensus 331 A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~p 410 (494)
T COG0464 331 ARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLP 410 (494)
T ss_pred HHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCC
Confidence 33578899999998542 2234444444322333 334555554443332 134678999999
Q ss_pred CHHHHHHHHHHhhccCCC
Q 001979 172 NYNEALHLFSWKAFRKGH 189 (987)
Q Consensus 172 ~~~ea~~Lf~~~a~~~~~ 189 (987)
+.++..+.|..+.-....
T Consensus 411 d~~~r~~i~~~~~~~~~~ 428 (494)
T COG0464 411 DLEERLEIFKIHLRDKKP 428 (494)
T ss_pred CHHHHHHHHHHHhcccCC
Confidence 999999999988754333
No 254
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.66 E-value=0.0087 Score=74.76 Aligned_cols=52 Identities=23% Similarity=0.267 Sum_probs=40.8
Q ss_pred CCCccccchhHHHHHHHhcCC------C-CCeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 9 SEKLVGMDYRLEQIYLMLGTG------L-DEARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~------~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
...++|.+..++.+...+... . .....+.+.|+.|+|||++|+.++..+...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 356899999999998887531 1 124578899999999999999999976443
No 255
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.66 E-value=0.0048 Score=59.33 Aligned_cols=118 Identities=13% Similarity=0.063 Sum_probs=60.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHH--hc-CCCcc--cc-------c
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEI--LL-DKNVK--IW-------D 101 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l--~~-~~~~~--~~-------~ 101 (987)
.+|-|++..|.||||+|...+-+...+-. .+.++...... ...+-....+.+ ..+ .. ..... .. .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~-~v~~vQFlKg~-~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGY-RVGVVQFLKGG-WKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEEeCCC-CccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46778888899999999999987655533 45554433321 112222222222 000 00 00000 00 1
Q ss_pred chhhHHHHHHHhcCC-ceEEEEeCCCCh-----HHHHHHhcCCCCCCCCcEEEEEeCCc
Q 001979 102 VHKGCHMIRIKLRHK-RVLLVIDDVDEF-----DQLQALAGQRDWFGLGSRIIITTRDR 154 (987)
Q Consensus 102 ~~~~~~~l~~~L~~k-~~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IiiTtR~~ 154 (987)
.....+..++.+... -=|||||++-.. -+.+.+...+....++..+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 112233344455444 459999998332 12222322222235678999999985
No 256
>PHA00729 NTP-binding motif containing protein
Probab=96.65 E-value=0.0091 Score=60.76 Aligned_cols=27 Identities=33% Similarity=0.197 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
+...|+|.|.+|+||||||.++++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445788999999999999999999764
No 257
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.64 E-value=0.0015 Score=60.52 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 258
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.60 E-value=0.014 Score=72.81 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=65.5
Q ss_pred CCCccccchhHHHHHHHhcCC------C-CCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHH
Q 001979 9 SEKLVGMDYRLEQIYLMLGTG------L-DEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLV 81 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~------~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 81 (987)
.+.++|.+..++.+...+... . .....+.++|+.|+|||+||+.+++.+-..-. ..+.++ ..+........
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~-~~~~~d-~s~~~~~~~~~ 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSED-AMIRLD-MSEYMEKHTVS 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCcc-ceEEEE-chhccccccHH
Confidence 367899999999998877421 1 12346779999999999999999987643322 233333 12221112211
Q ss_pred HHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCc-eEEEEeCCCC--hHHHHHHhcCC
Q 001979 82 ALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKR-VLLVIDDVDE--FDQLQALAGQR 138 (987)
Q Consensus 82 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~-~LlVlDdv~~--~~~~~~l~~~~ 138 (987)
.+.+.. ......++ ...+.+.++.++ -+|+||+++. .+.++.+...+
T Consensus 586 --------~l~g~~-~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~l 635 (821)
T CHL00095 586 --------KLIGSP-PGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQIL 635 (821)
T ss_pred --------HhcCCC-CcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHh
Confidence 111111 11111111 123445555554 5899999976 34455555444
No 259
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.59 E-value=0.0024 Score=60.87 Aligned_cols=22 Identities=41% Similarity=0.452 Sum_probs=20.8
Q ss_pred EEEEcCCcchHHHHHHHHHHHh
Q 001979 36 LGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 36 v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 260
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.023 Score=62.35 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=28.5
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
+.++|+|+|++|+||||++..++..+..+-. .+.+++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-kVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKK-TVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCC-cEEEEe
Confidence 4579999999999999999999987654432 344554
No 261
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.57 E-value=0.0071 Score=60.35 Aligned_cols=37 Identities=24% Similarity=0.599 Sum_probs=31.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...+|.|.|+.|.||||+|+.++.++..++. ..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~-~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYS-NVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCC-cEEEEe
Confidence 3468999999999999999999999887777 677764
No 262
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.057 Score=54.51 Aligned_cols=165 Identities=18% Similarity=0.284 Sum_probs=94.1
Q ss_pred CCCCCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhh
Q 001979 7 SASEKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVS 75 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 75 (987)
...+++-|.+++++++.+.+-. +-...+-|..+|++|.|||-+|++.+.+-...|- . .
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFL------K----L- 236 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFL------K----L- 236 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHH------H----h-
Confidence 3456778899999999886632 1123467889999999999999999987544442 1 0
Q ss_pred hccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh----cCCceEEEEeCCCCh-------------H---HHHHHh
Q 001979 76 QTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL----RHKRVLLVIDDVDEF-------------D---QLQALA 135 (987)
Q Consensus 76 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVlDdv~~~-------------~---~~~~l~ 135 (987)
.+ . ++.+.. ..++++.+++.+ ...+.+|.+|.++.. + ..-.++
T Consensus 237 --Ag-P----QLVQMf----------IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELL 299 (424)
T KOG0652|consen 237 --AG-P----QLVQMF----------IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELL 299 (424)
T ss_pred --cc-h----HHHhhh----------hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHH
Confidence 00 1 111110 112333444433 245789999987432 1 122334
Q ss_pred cCCCCCCC--CcEEEEEeCCcccc-----cccCcCceEEcCCCCHHHHHHHHHHhhccCC-CCCChHHHHHH
Q 001979 136 GQRDWFGL--GSRIIITTRDRHLL-----VRCDVEDTYMVEKLNYNEALHLFSWKAFRKG-HPTDGYFELSH 199 (987)
Q Consensus 136 ~~~~~~~~--gs~IiiTtR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~ 199 (987)
..+.-|.+ .-+||..|..-.++ ..-..+..++.+--+.+....+++-++-+-+ .+.-.++++++
T Consensus 300 NQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaR 371 (424)
T KOG0652|consen 300 NQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELAR 371 (424)
T ss_pred HhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhh
Confidence 44444443 45666665544333 2334566788877777776677766664433 23445555544
No 263
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.56 E-value=0.0044 Score=60.39 Aligned_cols=106 Identities=19% Similarity=0.170 Sum_probs=80.9
Q ss_pred cCCcccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccC-CCCCCCEEecCCCCCC--CCCCCCCCCCcccEE
Q 001979 395 YLPDELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQ-NMRHLKFIKLSHSVHL--TKTPDFTGVPKLERL 471 (987)
Q Consensus 395 ~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~-~l~~L~~L~Ls~~~~~--~~~~~~~~l~~L~~L 471 (987)
..-+..-.+++.+|.+..++..-.+++|.+|.+.+|.|..+...+. -+++|+.|.|.+|.+. +++..+..+|.|++|
T Consensus 39 ~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 39 ATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3445677788889988888877789999999999999999866654 5678999999998754 334457889999999
Q ss_pred eccCCcCCccc---cCccccCCCCcEEeCcCC
Q 001979 472 VLDGCTNLSFV---HPSIGLLKRLKVLNMKEC 500 (987)
Q Consensus 472 ~L~~~~~l~~~---~~~i~~l~~L~~L~L~~c 500 (987)
.+-+|.....- .-.+..+++|++||+++-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99987644321 123667888899988763
No 264
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.54 E-value=0.005 Score=62.58 Aligned_cols=109 Identities=14% Similarity=0.213 Sum_probs=63.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEE-EEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSF-LANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIK 112 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 112 (987)
.+|.|.|+.|.||||++.++...+..... ..++ +..-.+.... .. ..+. ...... .+.....+.++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~-~~i~t~e~~~E~~~~-~~----~~~i----~q~~vg-~~~~~~~~~i~~a 70 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKT-HHILTIEDPIEFVHE-SK----RSLI----NQREVG-LDTLSFENALKAA 70 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCC-cEEEEEcCCcccccc-Cc----ccee----eecccC-CCccCHHHHHHHH
Confidence 47899999999999999999887765544 3333 3211111000 00 0011 010111 1123345567788
Q ss_pred hcCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCccc
Q 001979 113 LRHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDRHL 156 (987)
Q Consensus 113 L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~~v 156 (987)
++...=.|++|++.+.+.+....... ..|-.++.|+-...+
T Consensus 71 Lr~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 71 LRQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred hcCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 88778899999998877666544432 245567777665433
No 265
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.54 E-value=0.058 Score=59.13 Aligned_cols=83 Identities=11% Similarity=0.147 Sum_probs=48.6
Q ss_pred EEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCcc-ccccc-CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChH
Q 001979 119 LLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDRH-LLVRC-DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGY 194 (987)
Q Consensus 119 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~ 194 (987)
++|+|+++.. .....+...+.....++.+|++|.+.. +.... .....+.+.+++.+++.+.+.... ..+.
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~- 189 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VAEP- 189 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CCcH-
Confidence 4456888664 333444433332234677777777754 33332 345688999999999998886531 1111
Q ss_pred HHHHHHHHHHhCCCchh
Q 001979 195 FELSHSMVNYADGLPLA 211 (987)
Q Consensus 195 ~~~~~~i~~~~~G~PLa 211 (987)
...+..++|-|+.
T Consensus 190 ----~~~l~~~~g~p~~ 202 (325)
T PRK08699 190 ----EERLAFHSGAPLF 202 (325)
T ss_pred ----HHHHHHhCCChhh
Confidence 1123568898854
No 266
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.49 E-value=0.0074 Score=69.61 Aligned_cols=76 Identities=26% Similarity=0.409 Sum_probs=50.7
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHH
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIR 110 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 110 (987)
++-++..++|++|+||||||..++++- .|. ++=+. .|.......+...+...+.......
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa--GYs--VvEIN----ASDeRt~~~v~~kI~~avq~~s~l~------------ 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA--GYS--VVEIN----ASDERTAPMVKEKIENAVQNHSVLD------------ 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc--Cce--EEEec----ccccccHHHHHHHHHHHHhhccccc------------
Confidence 456899999999999999999999863 333 33344 5555665656555555533222111
Q ss_pred HHhcCCceEEEEeCCCCh
Q 001979 111 IKLRHKRVLLVIDDVDEF 128 (987)
Q Consensus 111 ~~L~~k~~LlVlDdv~~~ 128 (987)
-.+++.=+|+|.+|..
T Consensus 384 --adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 384 --ADSRPVCLVIDEIDGA 399 (877)
T ss_pred --cCCCcceEEEecccCC
Confidence 1257788999999874
No 267
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.46 E-value=0.026 Score=67.02 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=40.5
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
...+.+||.+..++++.+.+..-...-..|.|+|..|+|||++|+.+++.-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345689999999999988775432333467899999999999999999863
No 268
>PRK06696 uridine kinase; Validated
Probab=96.45 E-value=0.0036 Score=65.11 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=37.4
Q ss_pred ccchhHHHHHHHhcC-CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 14 GMDYRLEQIYLMLGT-GLDEARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 14 Gr~~~~~~l~~~L~~-~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
.|.+.+++|.+.+.. ..+...+|+|.|.+|+||||+|+.+.+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 356777788777653 34567899999999999999999999987543
No 269
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.45 E-value=0.016 Score=60.55 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC-----CcceEEEE
Q 001979 20 EQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQF-----DDGSSFLA 69 (987)
Q Consensus 20 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~ 69 (987)
+.+.++|..+-....++.|.|++|+|||++|..++....... +..++|++
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 344555654445568999999999999999999987654443 12778887
No 270
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.40 E-value=0.00026 Score=64.12 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=57.9
Q ss_pred ccceEEecCCCCCCCCCCC--CCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCC
Q 001979 399 ELRLLKWHGYPLRSLPSNF--QPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGC 476 (987)
Q Consensus 399 ~Lr~L~~~~~~l~~lp~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~ 476 (987)
+|...++++|.++++|..| .++.++.|+|.+|.|.++|+.+..++.|+.|+++.|.+...+..+..+.+|-.|+..++
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 4666778888888888877 45578888888888888888888888888888888776655544555666666666554
Q ss_pred c
Q 001979 477 T 477 (987)
Q Consensus 477 ~ 477 (987)
.
T Consensus 134 a 134 (177)
T KOG4579|consen 134 A 134 (177)
T ss_pred c
Confidence 3
No 271
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.39 E-value=0.016 Score=64.62 Aligned_cols=50 Identities=28% Similarity=0.371 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 19 LEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 19 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
+.++.+.|..+-....++.|.|.+|+|||||+.+++......-. .++|++
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~-~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGG-KVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCC-eEEEEE
Confidence 44555556443345579999999999999999999987765544 677775
No 272
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.37 E-value=0.012 Score=61.76 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 19 LEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 19 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
+..+-++|..+-....++.|+|.+|+|||++|.++......+-. .++|+.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~-~~~y~~ 60 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGK-KVYVIT 60 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCC-EEEEEE
Confidence 34455566554456689999999999999999999765433434 677776
No 273
>PRK07261 topology modulation protein; Provisional
Probab=96.34 E-value=0.013 Score=58.01 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.|+|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 274
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.34 E-value=0.012 Score=60.05 Aligned_cols=209 Identities=14% Similarity=0.154 Sum_probs=118.0
Q ss_pred CCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhc------CCCcceEEEEehHh----------
Q 001979 10 EKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISY------QFDDGSSFLANVRE---------- 73 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~~~~~~---------- 73 (987)
+.+.++++...++++.... ++.....++|+.|.||-|.+..+.+++-. +-+ ...|......
T Consensus 13 ~~l~~~~e~~~~Lksl~~~--~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~-~~t~~tpS~kklEistvsS~ 89 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSST--GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIE-TRTFTTPSKKKLEISTVSSN 89 (351)
T ss_pred hhcccHHHHHHHHHHhccc--CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeee-eEEEecCCCceEEEEEeccc
Confidence 4467777777777776652 45677889999999999999999886411 122 2233321100
Q ss_pred ------hhhc-cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCce-EEEEeCCCCh--HHHHHHhcCCCCCCC
Q 001979 74 ------VSQT-RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRV-LLVIDDVDEF--DQLQALAGQRDWFGL 143 (987)
Q Consensus 74 ------~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~~~--~~~~~l~~~~~~~~~ 143 (987)
-|+. ..-..+.++++.++......+. -..+.| ++|+-.+|.. +.-.++.........
T Consensus 90 yHlEitPSDaG~~DRvViQellKevAQt~qie~-------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 90 YHLEITPSDAGNYDRVVIQELLKEVAQTQQIET-------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred ceEEeChhhcCcccHHHHHHHHHHHHhhcchhh-------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 0000 0112233344443222111110 112333 6777777663 333444444444456
Q ss_pred CcEEEEEeCCc-cc-ccccCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhhhc-
Q 001979 144 GSRIIITTRDR-HL-LVRCDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSFLF- 220 (987)
Q Consensus 144 gs~IiiTtR~~-~v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~- 220 (987)
.+|+|+...+- .+ ...-...-.+++++.+++|....++.-+-+..-..+ .+++++|+++++|+---...+....+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 78888755432 12 222233457899999999999999887755544333 58899999999997533322222221
Q ss_pred -C-----C----CHHHHHHHHHhhhc
Q 001979 221 -A-----R----SKAEWKDALDRLKY 236 (987)
Q Consensus 221 -~-----~----~~~~w~~~l~~l~~ 236 (987)
+ . ..-+|+-.+.....
T Consensus 235 ~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 235 NNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred ccccccccCCCCCCccHHHHHHHHHH
Confidence 1 1 34579988876543
No 275
>PRK07667 uridine kinase; Provisional
Probab=96.34 E-value=0.0078 Score=60.91 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 19 LEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 19 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
++++.+.+....+...+|+|.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 456666666544556899999999999999999999987643
No 276
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.32 E-value=0.018 Score=66.88 Aligned_cols=61 Identities=23% Similarity=0.362 Sum_probs=45.8
Q ss_pred CCCCCCccccchhHHHHHHHhcC---CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGT---GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
|...++++--.+.++++..||.. +....+++.+.||+|+||||.++.+++++ .|+ ..-|..
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~-v~Ew~n 78 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFE-VQEWIN 78 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCe-eEEecC
Confidence 33445677778889999999965 22345799999999999999999999975 344 444543
No 277
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.31 E-value=0.03 Score=61.68 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=35.0
Q ss_pred ccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 12 LVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 12 ~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
+||....++++.+.+..-...-.-|.|+|..|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 578888888887776543233355789999999999999999875
No 278
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.31 E-value=0.011 Score=63.98 Aligned_cols=50 Identities=28% Similarity=0.337 Sum_probs=37.8
Q ss_pred HHHHHHHhc-CCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 19 LEQIYLMLG-TGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 19 ~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...|..+|. .+-..-+++-|+|++|+||||||.+++......-. .++|++
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~-~~vyId 90 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGG-TVAFID 90 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-CEEEEC
Confidence 444556665 33355689999999999999999999887655555 788886
No 279
>PRK06762 hypothetical protein; Provisional
Probab=96.28 E-value=0.021 Score=56.31 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+|+|.|++|+||||+|+.+.+++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 280
>PRK09354 recA recombinase A; Provisional
Probab=96.27 E-value=0.012 Score=64.21 Aligned_cols=50 Identities=30% Similarity=0.373 Sum_probs=38.7
Q ss_pred HHHHHHHhc-CCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 19 LEQIYLMLG-TGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 19 ~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...|-.+|. .+-..-+++-|+|++|+||||||.+++......-. .++|++
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~-~~~yId 95 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGG-TAAFID 95 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-cEEEEC
Confidence 445666676 44456689999999999999999999887655555 788887
No 281
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.27 E-value=0.011 Score=64.08 Aligned_cols=50 Identities=32% Similarity=0.390 Sum_probs=37.7
Q ss_pred HHHHHHHhc-CCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 19 LEQIYLMLG-TGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 19 ~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...|-.+|. .+-..-+++.|+|++|+||||||..++......-. .++|++
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~-~v~yId 90 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGG-TAAFID 90 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-cEEEEc
Confidence 445556665 34456689999999999999999998887655544 677886
No 282
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.23 E-value=0.019 Score=58.12 Aligned_cols=48 Identities=25% Similarity=0.247 Sum_probs=33.0
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 18 RLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 18 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
+.+.+...+.. +-+++.|.|++|.||||+++.+...+...-. .++++.
T Consensus 6 Q~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~-~v~~~a 53 (196)
T PF13604_consen 6 QREAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGK-RVIGLA 53 (196)
T ss_dssp HHHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEE
T ss_pred HHHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCC-eEEEEC
Confidence 44555556553 2368889999999999999999887766533 455554
No 283
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.099 Score=52.57 Aligned_cols=147 Identities=23% Similarity=0.322 Sum_probs=82.4
Q ss_pred CCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhcc
Q 001979 10 EKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTR 78 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (987)
.++-|.+-+.+++.+.... +-+..|-|.++|++|.|||.||++|++.-... |+..++.
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~------firvvgs----- 223 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA------FIRVVGS----- 223 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh------eeeeccH-----
Confidence 5667788888888775532 22456889999999999999999999975433 3332211
Q ss_pred CHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh----cCCceEEEEeCCCChH------------H----HHHHhcCC
Q 001979 79 GLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL----RHKRVLLVIDDVDEFD------------Q----LQALAGQR 138 (987)
Q Consensus 79 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVlDdv~~~~------------~----~~~l~~~~ 138 (987)
++....+++ +..++++.+ .+.+-+|.+|.++... + +-+++...
T Consensus 224 -------efvqkylge----------gprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqm 286 (408)
T KOG0727|consen 224 -------EFVQKYLGE----------GPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQM 286 (408)
T ss_pred -------HHHHHHhcc----------CcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhc
Confidence 122222221 112333222 2466788999885432 1 22333333
Q ss_pred CCC--CCCcEEEEEeCCcccc-----cccCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 139 DWF--GLGSRIIITTRDRHLL-----VRCDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 139 ~~~--~~gs~IiiTtR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
..+ ....++|..|.....+ ..-..+..++.+--+..+-.-.|....
T Consensus 287 dgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 287 DGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred cCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhh
Confidence 322 3456777766543322 222345667777555555555565544
No 284
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.016 Score=60.29 Aligned_cols=142 Identities=23% Similarity=0.306 Sum_probs=77.8
Q ss_pred CCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhcc
Q 001979 10 EKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTR 78 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (987)
+.+-|--..+.++.+.+.. +-.....++|||++|.|||-+|++|+..+--.|= .+. . +
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl----~v~--s--s--- 200 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFL----KVV--S--S--- 200 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceE----Eee--H--h---
Confidence 3445555555555554421 1123578999999999999999999998754442 111 0 0
Q ss_pred CHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh----cCCceEEEEeCCCChH----------------HHHHHhcCC
Q 001979 79 GLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL----RHKRVLLVIDDVDEFD----------------QLQALAGQR 138 (987)
Q Consensus 79 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVlDdv~~~~----------------~~~~l~~~~ 138 (987)
.+... -..+....|+++. ...++.|.+||+|... .+-.++..+
T Consensus 201 -------~lv~k----------yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqm 263 (388)
T KOG0651|consen 201 -------ALVDK----------YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQM 263 (388)
T ss_pred -------hhhhh----------hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhh
Confidence 11111 0112222333333 2466999999985421 133444433
Q ss_pred CCC--CCCcEEEEEeCCccccccc-----CcCceEEcCCCCHHHHHHH
Q 001979 139 DWF--GLGSRIIITTRDRHLLVRC-----DVEDTYMVEKLNYNEALHL 179 (987)
Q Consensus 139 ~~~--~~gs~IiiTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~L 179 (987)
..+ -...++|+||.+...+... ..+..|+.+..+...-.++
T Consensus 264 dgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I 311 (388)
T KOG0651|consen 264 DGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGI 311 (388)
T ss_pred ccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceee
Confidence 322 2457889999887665431 3446677774443333333
No 285
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.21 E-value=0.0004 Score=62.97 Aligned_cols=88 Identities=23% Similarity=0.213 Sum_probs=41.7
Q ss_pred CCCCEEecCCCCCCCCCCCCC-CCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhc
Q 001979 443 RHLKFIKLSHSVHLTKTPDFT-GVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNA 521 (987)
Q Consensus 443 ~~L~~L~Ls~~~~~~~~~~~~-~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l 521 (987)
.+|+..+|++|.+...++.|. .++.++.|+|++| .+..+|..+..++.|+.||++.| .+...|.-+ ..+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi--------~~L 122 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFN-PLNAEPRVI--------APL 122 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccC-ccccchHHH--------HHH
Confidence 334444444444333333322 2334455555542 33445555555555555555554 333333322 335
Q ss_pred cccceeecCCcCCcccCcc
Q 001979 522 KRLLQLHLDQTSIEEIPPS 540 (987)
Q Consensus 522 ~~L~~L~L~~~~i~~lp~~ 540 (987)
.+|-.|+..++.+.++|..
T Consensus 123 ~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 123 IKLDMLDSPENARAEIDVD 141 (177)
T ss_pred HhHHHhcCCCCccccCcHH
Confidence 5555566666666655544
No 286
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.046 Score=61.04 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998765
No 287
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.15 E-value=0.033 Score=58.50 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 19 LEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 19 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
++.|-++|..+-....++.|.|++|.|||++|.++......+-+ .++|+.
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge-~~lyvs 56 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-PGIYVA 56 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-cEEEEE
Confidence 34455666555456689999999999999999998765333444 677776
No 288
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.10 E-value=0.057 Score=58.57 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=34.7
Q ss_pred ceEEcCCCCHHHHHHHHHHhhccC----CCCCChHHHHHHHHHHHhCCCchhHHHHhhhh
Q 001979 164 DTYMVEKLNYNEALHLFSWKAFRK----GHPTDGYFELSHSMVNYADGLPLALEILGSFL 219 (987)
Q Consensus 164 ~~~~l~~L~~~ea~~Lf~~~a~~~----~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L 219 (987)
.+++++..+.+|+.++...+.-.. ..+. ++--+++.-..+|+|--++-++.++
T Consensus 404 ~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 404 VPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 578999999999999877654211 1222 2345567777799996555555544
No 289
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.10 E-value=0.017 Score=61.21 Aligned_cols=117 Identities=18% Similarity=0.167 Sum_probs=64.1
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCC----cccc-cchhh
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKN----VKIW-DVHKG 105 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~----~~~~-~~~~~ 105 (987)
++.+.++|.|+.|.|||||++.++..++... +.+++.-. .+.......++... ... ..+.. .+.. ....
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~--G~i~~~g~-~v~~~d~~~ei~~~-~~~-~~q~~~~~r~~v~~~~~k- 182 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTGI--SQLGLRGK-KVGIVDERSEIAGC-VNG-VPQHDVGIRTDVLDGCPK- 182 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCCC--ceEEECCE-EeecchhHHHHHHH-hcc-cccccccccccccccchH-
Confidence 3457899999999999999999998765432 33443200 01000001111111 000 11111 0110 1111
Q ss_pred HHHHHHHh-cCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCccc
Q 001979 106 CHMIRIKL-RHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDRHL 156 (987)
Q Consensus 106 ~~~l~~~L-~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~~v 156 (987)
..-+...+ ...+=++++|++...+.+.++..... .|..+|+||-+..+
T Consensus 183 ~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 183 AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 11223333 35788999999988777777766542 57889999987544
No 290
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.09 E-value=0.0092 Score=57.12 Aligned_cols=35 Identities=29% Similarity=0.279 Sum_probs=29.9
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.+|-|.|.+|.||||||+++.+++...-. .+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~-~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGI-KVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS--EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCC-cEEEec
Confidence 58899999999999999999999887766 666665
No 291
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.035 Score=56.12 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=41.3
Q ss_pred CCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEe
Q 001979 10 EKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLAN 70 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~ 70 (987)
.++=|-..+++++.+.... +-+..+-|.++|++|.|||-+|++|+++- ..||+..
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt------dacfirv 242 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT------DACFIRV 242 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc------CceEEee
Confidence 5566778888888775432 12345678899999999999999999974 5677763
No 292
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.07 E-value=0.031 Score=58.45 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=35.1
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 20 EQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 20 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
+.+.++|..+-.....+.|.|.+|.||||+|.+++.....+-+ .++|+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~-~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGD-PVIYVT 55 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCC-eEEEEE
Confidence 3455555444345689999999999999999998765433444 677776
No 293
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.06 E-value=0.014 Score=55.89 Aligned_cols=101 Identities=18% Similarity=0.270 Sum_probs=56.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI 111 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 111 (987)
...+++|.|+.|.|||||++.+.-..+ ... +.++++....+.-... ...-+...-.+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~-G~i~~~~~~~i~~~~~-------------------lS~G~~~rv~lar 83 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE-PDE-GIVTWGSTVKIGYFEQ-------------------LSGGEKMRLALAK 83 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC-CCc-eEEEECCeEEEEEEcc-------------------CCHHHHHHHHHHH
Confidence 346899999999999999999987543 223 5555542100000000 0011112223455
Q ss_pred HhcCCceEEEEeCCCC---h---HHHHHHhcCCCCCCCCcEEEEEeCCccccc
Q 001979 112 KLRHKRVLLVIDDVDE---F---DQLQALAGQRDWFGLGSRIIITTRDRHLLV 158 (987)
Q Consensus 112 ~L~~k~~LlVlDdv~~---~---~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~ 158 (987)
.+..++-++++|+-.. . ..+.++.... +..||++|.+...+.
T Consensus 84 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~~ 131 (144)
T cd03221 84 LLLENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFLD 131 (144)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHH
Confidence 5666777899998632 2 2233333322 347888888765443
No 294
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.05 E-value=0.0066 Score=69.39 Aligned_cols=49 Identities=29% Similarity=0.320 Sum_probs=41.0
Q ss_pred CCccccchhHHHHHHHhc----CCCCCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 10 EKLVGMDYRLEQIYLMLG----TGLDEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~----~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
++++|.++.++++.+.|. .....-+++.++||+|+||||||+.+++.+.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 468999999999998882 2234568999999999999999999998654
No 295
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.024 Score=56.16 Aligned_cols=127 Identities=14% Similarity=0.211 Sum_probs=63.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCc---c-----cccch
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNV---K-----IWDVH 103 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---~-----~~~~~ 103 (987)
...+++|.|+.|.|||||++.++-.... .. +.+++.... ... .......+.+ .-+...... . ...-+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~-G~i~~~g~~-~~~-~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP-TS-GEILIDGVD-LRD-LDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC-CC-CEEEECCEE-hhh-cCHHHHHhhE-EEEcCCchhccchHHHHhhCHHH
Confidence 3468999999999999999999875432 33 555553110 000 0000000000 000000000 0 00011
Q ss_pred hhHHHHHHHhcCCceEEEEeCCCC------hHHHHHHhcCCCCCCCCcEEEEEeCCcccccccCcCceEEc
Q 001979 104 KGCHMIRIKLRHKRVLLVIDDVDE------FDQLQALAGQRDWFGLGSRIIITTRDRHLLVRCDVEDTYMV 168 (987)
Q Consensus 104 ~~~~~l~~~L~~k~~LlVlDdv~~------~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~~~~~~~~~l 168 (987)
...-.+.+.+..++-++++|+-.. ...+..+...+ ..+..||++|.+...... .+.++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL---AKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh---cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 112234455667778999998532 22333333333 235778888988766543 4555544
No 296
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.00 E-value=0.048 Score=54.72 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
+|.|.|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999875
No 297
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.99 E-value=0.036 Score=54.28 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCC
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFD 62 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 62 (987)
+.|.+.|.+|+||||+|+.++..++++-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 46788999999999999999998766544
No 298
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.95 E-value=0.018 Score=63.54 Aligned_cols=48 Identities=17% Similarity=0.148 Sum_probs=38.3
Q ss_pred CCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 9 SEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
.+.++|....++++.+.+..-...-.-|.|.|..|+||+++|+.+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 357999999999998877543333346789999999999999999864
No 299
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.95 E-value=0.018 Score=60.94 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=33.5
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh--hc---CCCcceEEEE
Q 001979 21 QIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI--SY---QFDDGSSFLA 69 (987)
Q Consensus 21 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~--~~---~f~~~~~~~~ 69 (987)
.|-++|..+-....+.=|+|++|+|||+||..++-.+ .. ..+..++|++
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 4445554332344688999999999999999887653 22 2233688887
No 300
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.94 E-value=0.26 Score=53.76 Aligned_cols=48 Identities=19% Similarity=0.086 Sum_probs=33.9
Q ss_pred eEEcCCCCHHHHHHHHHHhhccCCCCC-ChHHHHHHHHHHHhCCCchhH
Q 001979 165 TYMVEKLNYNEALHLFSWKAFRKGHPT-DGYFELSHSMVNYADGLPLAL 212 (987)
Q Consensus 165 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~G~PLal 212 (987)
.++|++++.+|+..++..++-..-... ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988774433222 223345666777779999644
No 301
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.13 Score=57.01 Aligned_cols=152 Identities=17% Similarity=0.153 Sum_probs=82.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL 113 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 113 (987)
|--.++||+|.|||++..++++.+. |+ ++=+. ..++. +-.+ ++.++..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~--yd--IydLe-Lt~v~---~n~d-Lr~LL~~----------------------- 283 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN--YD--IYDLE-LTEVK---LDSD-LRHLLLA----------------------- 283 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC--Cc--eEEee-ecccc---CcHH-HHHHHHh-----------------------
Confidence 5567999999999999999998753 33 22222 11111 1111 2222222
Q ss_pred cCCceEEEEeCCCChHH--------------------HHHHhcCC--CCCCC-CcEEEE-EeCCcccccc-----cCcCc
Q 001979 114 RHKRVLLVIDDVDEFDQ--------------------LQALAGQR--DWFGL-GSRIII-TTRDRHLLVR-----CDVED 164 (987)
Q Consensus 114 ~~k~~LlVlDdv~~~~~--------------------~~~l~~~~--~~~~~-gs~Iii-TtR~~~v~~~-----~~~~~ 164 (987)
...|-+||+.|+|..-+ +.-|+... .|... +-|||| ||..++-+.. -..+.
T Consensus 284 t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 284 TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCccee
Confidence 13556777777754211 11222221 12222 356654 7776543322 24556
Q ss_pred eEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhh-hcCC
Q 001979 165 TYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSF-LFAR 222 (987)
Q Consensus 165 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~-L~~~ 222 (987)
.+.+.-=+.+.-..|+.++..... + ..+..+|.+...|.-+.=..++.. +..+
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~-~----h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEE-D----HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCC-C----cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 788888899999999998874433 2 244555555555554443444443 3443
No 302
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.93 E-value=0.028 Score=59.76 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=60.7
Q ss_pred hhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCC
Q 001979 17 YRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKN 96 (987)
Q Consensus 17 ~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~ 96 (987)
..++.+.+++.. ...+|.|.|+.|.||||+++++...+...-. .++.+.+-.+..- .+. .++ .
T Consensus 67 ~~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~-~iitiEdp~E~~~-~~~--------~q~----~ 129 (264)
T cd01129 67 ENLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEK-NIITVEDPVEYQI-PGI--------NQV----Q 129 (264)
T ss_pred HHHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCC-eEEEECCCceecC-CCc--------eEE----E
Confidence 344455555542 2358999999999999999999887644222 3444442222110 010 000 0
Q ss_pred cccccchhhHHHHHHHhcCCceEEEEeCCCChHHHHHHhc
Q 001979 97 VKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFDQLQALAG 136 (987)
Q Consensus 97 ~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~ 136 (987)
............++..++...=.|+++++.+.+....+..
T Consensus 130 v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~ 169 (264)
T cd01129 130 VNEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQ 169 (264)
T ss_pred eCCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHH
Confidence 0000111345677888888899999999998876655443
No 303
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.92 E-value=0.0057 Score=55.78 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=20.2
Q ss_pred EEEEcCCcchHHHHHHHHHHHhhcCCC
Q 001979 36 LGICGMGGIGKTTLARFVFDNISYQFD 62 (987)
Q Consensus 36 v~I~G~gGiGKTtLA~~v~~~~~~~f~ 62 (987)
|.|+|.+|+||||+|++++..+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 679999999999999999999877776
No 304
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.15 Score=59.76 Aligned_cols=150 Identities=20% Similarity=0.220 Sum_probs=80.9
Q ss_pred CCCCCCC-CCccccchhHHHHHHHhcC----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEeh
Q 001979 3 HTLLSAS-EKLVGMDYRLEQIYLMLGT----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANV 71 (987)
Q Consensus 3 ~~~~~~~-~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~ 71 (987)
|..|.+. +++=|.++-..+|.+-+.. +-.+..-|.++|++|.|||-+|++|+.+.+-. |++
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~------FlS-- 735 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN------FLS-- 735 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee------EEe--
Confidence 3444444 5666777777777765543 11223468899999999999999999875333 333
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH---------------HHHHHhc
Q 001979 72 REVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD---------------QLQALAG 136 (987)
Q Consensus 72 ~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---------------~~~~l~~ 136 (987)
+- + .++++-.+.+ +.+...+...+.-..+++.|.+|++|... .+.+++.
T Consensus 736 --VK---G-PELLNMYVGq----------SE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLA 799 (953)
T KOG0736|consen 736 --VK---G-PELLNMYVGQ----------SEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLA 799 (953)
T ss_pred --ec---C-HHHHHHHhcc----------hHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHH
Confidence 11 1 1222222221 12222223333334589999999997642 2444444
Q ss_pred CCCCCC----CCcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHH
Q 001979 137 QRDWFG----LGSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEA 176 (987)
Q Consensus 137 ~~~~~~----~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea 176 (987)
.+.... .+-=||=.|..+.++.. -.-++.+.|.+=+.+|.
T Consensus 800 ELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~es 848 (953)
T KOG0736|consen 800 ELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAES 848 (953)
T ss_pred HhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHH
Confidence 443222 23334545544444332 23455666665555544
No 305
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.91 E-value=0.066 Score=60.83 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=28.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFL 68 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 68 (987)
...+|.++|++|+||||.|..++..++.+-. .+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~-kV~lV 129 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGL-KVGLV 129 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCC-eEEEe
Confidence 4678999999999999999999988765422 34444
No 306
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.89 E-value=0.033 Score=60.01 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=28.6
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcC-CCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQ-FDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~ 69 (987)
..++++|+|++|+||||++..++..+..+ -...+.+++
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 45799999999999999999999876543 111455554
No 307
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.87 E-value=0.12 Score=66.86 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..+-|.++|++|.|||.||++++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45678899999999999999999874
No 308
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.86 E-value=0.043 Score=52.88 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
+|.|.|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999764
No 309
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.80 E-value=0.041 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=20.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 57899999999999999999764
No 310
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.80 E-value=0.022 Score=56.06 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=62.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehH---hhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVR---EVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHM 108 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~---~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 108 (987)
.-.+++|.|+.|.|||||++.++-.... .. +.+++...+ -+.+...+. ...+...+..........-+...-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~-G~i~~~~~~~i~~~~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPW-GS-GRIGMPEGEDLLFLPQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC-CC-ceEEECCCceEEEECCCCccc--cccHHHHhhccCCCCCCHHHHHHHH
Confidence 3468999999999999999999875432 12 333332100 011111111 0111111111011111112222334
Q ss_pred HHHHhcCCceEEEEeCCCC------hHHHHHHhcCCCCCCCCcEEEEEeCCcccccccCcCceEEcC
Q 001979 109 IRIKLRHKRVLLVIDDVDE------FDQLQALAGQRDWFGLGSRIIITTRDRHLLVRCDVEDTYMVE 169 (987)
Q Consensus 109 l~~~L~~k~~LlVlDdv~~------~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~~~~~~~~~l~ 169 (987)
+.+.+..++=++++|+-.. ...+.++.... +..||++|.+..... ..++++.++
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~~~--~~d~i~~l~ 161 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSLWK--FHDRVLDLD 161 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhHHh--hCCEEEEEc
Confidence 4556667778889998522 22233333322 467888888876543 244555543
No 311
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.15 Score=52.85 Aligned_cols=172 Identities=18% Similarity=0.176 Sum_probs=92.6
Q ss_pred CCccccchhHHHHHHHhcC---------C-CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccC
Q 001979 10 EKLVGMDYRLEQIYLMLGT---------G-LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRG 79 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~---------~-~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 79 (987)
+++-|.+...+.|++..-. + ....+-|.++|++|.||+-||++|+.+.-. .|.+ +|.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS------TFFS----vSS--- 199 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS------TFFS----VSS--- 199 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC------ceEE----eeh---
Confidence 5677888888888875421 1 224688999999999999999999986432 2222 221
Q ss_pred HHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh-cCCceEEEEeCCCCh---------HH--------HHHHhcCCCCC
Q 001979 80 LVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL-RHKRVLLVIDDVDEF---------DQ--------LQALAGQRDWF 141 (987)
Q Consensus 80 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~---------~~--------~~~l~~~~~~~ 141 (987)
.++.+.-++ +.+.+...+.+.- .+++-+|.+|.++.. +. +-++.+. ...
T Consensus 200 -----SDLvSKWmG-------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGV-G~d 266 (439)
T KOG0739|consen 200 -----SDLVSKWMG-------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGV-GND 266 (439)
T ss_pred -----HHHHHHHhc-------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcc-ccC
Confidence 122222111 1122333333333 368899999998542 11 1122221 112
Q ss_pred CCCcEEEEEeCCccccccc---CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc
Q 001979 142 GLGSRIIITTRDRHLLVRC---DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 142 ~~gs~IiiTtR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 209 (987)
..|.-|+-.|.-+-++... .....+.++--+......+|.-+.....+. -...-.+++.++..|.-
T Consensus 267 ~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~--LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 267 NDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHV--LTEQDFKELARKTEGYS 335 (439)
T ss_pred CCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccc--cchhhHHHHHhhcCCCC
Confidence 2355555566666554432 223445555445555566777766433222 11233455556666643
No 312
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.78 E-value=0.044 Score=54.74 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=26.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...+++|.|+.|.|||||++.++-.... .. +.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~-G~i~~~ 62 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP-QQ-GEITLD 62 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CC-CEEEEC
Confidence 3468999999999999999999875432 23 455553
No 313
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.019 Score=57.43 Aligned_cols=61 Identities=21% Similarity=0.159 Sum_probs=38.8
Q ss_pred hhHHHHHHHhcCCceEEEEeCCCChHHHHHH------hcCCCCCCCCcEEEEEeCCcccccccCcCceE
Q 001979 104 KGCHMIRIKLRHKRVLLVIDDVDEFDQLQAL------AGQRDWFGLGSRIIITTRDRHLLVRCDVEDTY 166 (987)
Q Consensus 104 ~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l------~~~~~~~~~gs~IiiTtR~~~v~~~~~~~~~~ 166 (987)
.....|.+.+--++-+.|||.-|+--+++++ ...+. .+|+.++|.|...+++.....+.++
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEE
Confidence 3455666777778889999988763332222 22222 4577788888888888877655443
No 314
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.77 E-value=0.045 Score=62.86 Aligned_cols=51 Identities=25% Similarity=0.311 Sum_probs=38.1
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 18 RLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 18 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
-++++.+.|..+-....++.|.|.+|+|||||+.+++.....+-. .++|++
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~-~vlYvs 115 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGG-KVLYVS 115 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEEEE
Confidence 355666666544345679999999999999999999987764434 677776
No 315
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.76 E-value=0.0083 Score=60.89 Aligned_cols=26 Identities=42% Similarity=0.625 Sum_probs=23.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
+|+|.|++|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988654
No 316
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.76 E-value=0.019 Score=57.78 Aligned_cols=30 Identities=33% Similarity=0.576 Sum_probs=26.7
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
..+.+|||.|.+|.||||+|+.++..++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999988755
No 317
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.74 E-value=0.007 Score=61.66 Aligned_cols=83 Identities=24% Similarity=0.314 Sum_probs=53.5
Q ss_pred CCCCCcccEEecCCC--CCCCCCCccccCCCCCCCEEeCCCCCCcccc--hhhhccCCCcEEecCCCcccccCC------
Q 001979 657 LSGLHCLSRLDLGDC--NLQEGAIPNDLGSLSALTNLTLSRNNFFSLP--ASINQLSRLETLNIDYCNRLKALP------ 726 (987)
Q Consensus 657 l~~l~~L~~L~Ls~~--~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~~lp------ 726 (987)
+..+++|+.|.++.| +.. ..++.....+++|++|+|++|++..+. ..+..+.+|..|++.+|.-.. +-
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHH
Confidence 555678888888888 443 345555556688999999999776321 245677888888888887443 21
Q ss_pred -CCccccccccccccc
Q 001979 727 -ELPASIDGLFAHNCT 741 (987)
Q Consensus 727 -~lp~sL~~L~~~~C~ 741 (987)
.+.++|++|+-..+.
T Consensus 139 f~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDVD 154 (260)
T ss_pred HHHhhhhccccccccC
Confidence 234556655544443
No 318
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.73 E-value=0.082 Score=58.55 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=28.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCC-cceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFD-DGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~ 69 (987)
..++++++|+.|+||||++.+++.+...++. ..+.++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 3579999999999999999999987654432 1455554
No 319
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.72 E-value=0.029 Score=59.88 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
+-|.++|+.|+|||++++......
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CcEEEECCCCCchhHHHHhhhccC
Confidence 677899999999999999988754
No 320
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.071 Score=61.98 Aligned_cols=175 Identities=19% Similarity=0.222 Sum_probs=100.6
Q ss_pred CCCCccccchhHHHHHHHhcC---C-------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC--cceEEEEehHhhh
Q 001979 8 ASEKLVGMDYRLEQIYLMLGT---G-------LDEARILGICGMGGIGKTTLARFVFDNISYQFD--DGSSFLANVREVS 75 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~~~ 75 (987)
...++-|.|+..+++.+.++. . ..-.+-|.++|++|.|||.||++++-+..--|- .+.-|+.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe------ 221 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE------ 221 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh------
Confidence 346788998888887776643 1 112466899999999999999999986433331 0111111
Q ss_pred hccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh----------------HHHHHHhcCCC
Q 001979 76 QTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF----------------DQLQALAGQRD 139 (987)
Q Consensus 76 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~ 139 (987)
...+. ..........+..++.+++|++|.+|.. ..+.++.....
T Consensus 222 --------------mfVGv------GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmD 281 (596)
T COG0465 222 --------------MFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD 281 (596)
T ss_pred --------------hhcCC------CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhc
Confidence 10000 1112223444455667899999987542 23667777776
Q ss_pred CCCCCcEE--EEEeCCccccc-----ccCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchh
Q 001979 140 WFGLGSRI--IITTRDRHLLV-----RCDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLA 211 (987)
Q Consensus 140 ~~~~gs~I--iiTtR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 211 (987)
-++.+.-| +..|..+.|+. .-..+..+.++..+.....+++.-++-...... ..++. .|++.+-|.-.|
T Consensus 282 GF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~--~Vdl~-~iAr~tpGfsGA 357 (596)
T COG0465 282 GFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAE--DVDLK-KIARGTPGFSGA 357 (596)
T ss_pred cCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCC--cCCHH-HHhhhCCCcccc
Confidence 66633323 33333333332 224567788888888888888887764333221 11222 266666665543
No 321
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.70 E-value=0.035 Score=58.93 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=23.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
..|.|+|.+|.||||+|+.+...+...-. .+.+++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~-~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGK-EVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT---EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCC-EEEEEc
Confidence 46889999999999999999998765322 344443
No 322
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.70 E-value=0.038 Score=62.01 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=35.8
Q ss_pred ccchhHHHHHHHhc-----CCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 14 GMDYRLEQIYLMLG-----TGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 14 Gr~~~~~~l~~~L~-----~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
=..+.+++++.||. ...-+.+++.|.|++|+||||..+.++..+
T Consensus 86 VHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 86 VHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred hhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 34567888999997 333456899999999999999999999864
No 323
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.69 E-value=0.033 Score=60.56 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh--hc---CCCcceEEEE
Q 001979 19 LEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI--SY---QFDDGSSFLA 69 (987)
Q Consensus 19 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~--~~---~f~~~~~~~~ 69 (987)
.+.+-++|..+-...+++-|+|++|+|||+||.+++-.. .. .-...++|++
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 344555665443456889999999999999999877532 21 1233788887
No 324
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.69 E-value=0.035 Score=65.41 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=41.0
Q ss_pred CCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 8 ASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
....++|....++++.+.+..-...-..|.|+|..|+|||++|+.+.+.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 45689999999999888876533334578899999999999999999864
No 325
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.12 Score=59.89 Aligned_cols=173 Identities=17% Similarity=0.116 Sum_probs=94.9
Q ss_pred CCccccchhHHHHHHHhcCCC-----------CCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhcc
Q 001979 10 EKLVGMDYRLEQIYLMLGTGL-----------DEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTR 78 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (987)
+++-|+.+..+.+++.+.-.. ....-|.++|++|.|||-||.+++.... .-|++ +.
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~------~~fis----vK--- 733 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN------LRFIS----VK--- 733 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC------eeEEE----ec---
Confidence 455566666666666663221 1123488999999999999999998642 23343 11
Q ss_pred CHHHHHHHHHHHHhcCCCcccccchhhHHHHH-HHhcCCceEEEEeCCCChH-------------HHHHHhcCCCCC--C
Q 001979 79 GLVALQEQLVSEILLDKNVKIWDVHKGCHMIR-IKLRHKRVLLVIDDVDEFD-------------QLQALAGQRDWF--G 142 (987)
Q Consensus 79 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~ 142 (987)
+ .+++...+ +. + ++....+. +.-.-+++.+.+|.+|... .+.+++..+.-. -
T Consensus 734 G-PElL~KyI----Ga------S-Eq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl 801 (952)
T KOG0735|consen 734 G-PELLSKYI----GA------S-EQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL 801 (952)
T ss_pred C-HHHHHHHh----cc------c-HHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc
Confidence 1 12222222 21 1 22233333 3344689999999986632 355665554311 1
Q ss_pred CCcEEEE-EeCCccc----ccccCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCch
Q 001979 143 LGSRIII-TTRDRHL----LVRCDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPL 210 (987)
Q Consensus 143 ~gs~Iii-TtR~~~v----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 210 (987)
.|.-|+- |||..-+ +..-..++.+.-+.-+..|.++++...+-....+. ....+.++.+++|.--
T Consensus 802 ~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~---~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 802 DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDT---DVDLECLAQKTDGFTG 871 (952)
T ss_pred ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCcc---ccchHHHhhhcCCCch
Confidence 3555554 5554322 22223455666667788888888876653222221 1224556666666543
No 326
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.66 E-value=0.0015 Score=77.06 Aligned_cols=109 Identities=22% Similarity=0.263 Sum_probs=56.6
Q ss_pred CCcccEEecCCCC-CCCCCCccccCCCCCCCEEeCCCCCCc---ccchhhhccCCCcEEecCCCc---ccccCC-----C
Q 001979 660 LHCLSRLDLGDCN-LQEGAIPNDLGSLSALTNLTLSRNNFF---SLPASINQLSRLETLNIDYCN---RLKALP-----E 727 (987)
Q Consensus 660 l~~L~~L~Ls~~~-l~~~~lp~~l~~l~~L~~L~L~~n~l~---~lp~~i~~l~~L~~L~L~~c~---~L~~lp-----~ 727 (987)
+++|+.|.+.+|. +++..+-.....+++|++|+|++|... .+.....++++|+.|.+..+. .++.+. .
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~ 347 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLT 347 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhc
Confidence 5667777766665 455555555566677777777777332 233334455655555544333 333321 2
Q ss_pred Cc-ccccccccccccccccccCCCcccCCCCceEEecccccc
Q 001979 728 LP-ASIDGLFAHNCTSLIKLCSPSNITRLTPRMFYLSNCFKL 768 (987)
Q Consensus 728 lp-~sL~~L~~~~C~~L~~l~~~~~l~~~~~~~l~~~~C~~L 768 (987)
.. ..+..+.+.+|+.|+.+........-......+.+|+.|
T Consensus 348 ~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 348 LTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred cCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 23 256666777777776665222110000112346677666
No 327
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.65 E-value=0.0088 Score=55.97 Aligned_cols=22 Identities=41% Similarity=0.756 Sum_probs=20.5
Q ss_pred EEEEcCCcchHHHHHHHHHHHh
Q 001979 36 LGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 36 v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
|+|.|++|+||||+|+.+.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999984
No 328
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.65 E-value=0.08 Score=66.15 Aligned_cols=212 Identities=16% Similarity=0.090 Sum_probs=105.8
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCC---CcceEEEEehHhhhhccCHHH-HHHHHHHHHhcCCCcccccchhhHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQF---DDGSSFLANVREVSQTRGLVA-LQEQLVSEILLDKNVKIWDVHKGCHMI 109 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f---~~~~~~~~~~~~~~~~~~~~~-l~~~ll~~l~~~~~~~~~~~~~~~~~l 109 (987)
.-+.|+|.+|.||||+...++-....+. .+..+++..-........... .....+........ .........
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~----~~~~~~~~~ 298 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG----IAKQLIEAH 298 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC----CcchhhHHH
Confidence 4688999999999999999987643332 224555542211111111111 11222222111111 111112222
Q ss_pred HHHhcCCceEEEEeCCCChHH---------HHHHhcCCCCCCCCcEEEEEeCCcccccccCcCceEEcCCCCHHHHHHHH
Q 001979 110 RIKLRHKRVLLVIDDVDEFDQ---------LQALAGQRDWFGLGSRIIITTRDRHLLVRCDVEDTYMVEKLNYNEALHLF 180 (987)
Q Consensus 110 ~~~L~~k~~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~IiiTtR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf 180 (987)
.+.++..++++++|++|.... +..+.+. -+.+.+|+|+|....-........+++..+.++.-.+..
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFI 374 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHH
Confidence 578889999999999976432 2223322 358999999997654443333445566666555443222
Q ss_pred H--------HhhccCCCCC-ChH-HHH---HHHHHHHhCCCchhHHHHhhhhc------CCCHHHHHHHHHhhhcCCCch
Q 001979 181 S--------WKAFRKGHPT-DGY-FEL---SHSMVNYADGLPLALEILGSFLF------ARSKAEWKDALDRLKYVPDQK 241 (987)
Q Consensus 181 ~--------~~a~~~~~~~-~~~-~~~---~~~i~~~~~G~PLal~~l~~~L~------~~~~~~w~~~l~~l~~~~~~~ 241 (987)
. ...++..... ..+ ..+ ..+-++.....|+++.+.+..-. ....+-++.+++.+-...+..
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~~ 454 (824)
T COG5635 375 LYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDET 454 (824)
T ss_pred HHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccchh
Confidence 2 1122111111 001 111 12334444788999888874332 234556666666554433322
Q ss_pred HHHHHHHhHhCc
Q 001979 242 IFEILKISYDGL 253 (987)
Q Consensus 242 i~~~l~~sy~~L 253 (987)
-.......|+.+
T Consensus 455 ~~~~~~~~~~~~ 466 (824)
T COG5635 455 RGIKWSKTYAKL 466 (824)
T ss_pred hhhcchhhhccc
Confidence 222233444444
No 329
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.63 E-value=0.038 Score=57.26 Aligned_cols=125 Identities=19% Similarity=0.211 Sum_probs=70.5
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEe--hHhhhhccCHHHHHHHHHHHHhcCC------Ccccccch
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLAN--VREVSQTRGLVALQEQLVSEILLDK------NVKIWDVH 103 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~l~~~ll~~l~~~~------~~~~~~~~ 103 (987)
+..+++|+|..|.||||+|+.+..-.+-.. +.+++.. +.... .....+...+++..+.... ..+...-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~--G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTS--GEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCC--ceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 457999999999999999999997544333 3444431 11111 1122333344444432211 11222333
Q ss_pred hhHHHHHHHhcCCceEEEEeCCCC------hHHHHHHhcCCCCCCCCcEEEEEeCCccccccc
Q 001979 104 KGCHMIRIKLRHKRVLLVIDDVDE------FDQLQALAGQRDWFGLGSRIIITTRDRHLLVRC 160 (987)
Q Consensus 104 ~~~~~l~~~L~~k~~LlVlDdv~~------~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~~ 160 (987)
...-.|.+.|.-++-++|.|+--. ..|+-.+...+. ...|-..+..|-|-.++..+
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 444567788889999999998532 233333333322 13466677777776665553
No 330
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.63 E-value=0.034 Score=54.15 Aligned_cols=116 Identities=16% Similarity=0.049 Sum_probs=59.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHh-cCCCccc--cc-------ch
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEIL-LDKNVKI--WD-------VH 103 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~~--~~-------~~ 103 (987)
.+|-|++..|.||||.|..++-+...+=- .++.+...... ...+-....+.+.-.+. ....... .+ ..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~-~v~ivQFlKg~-~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGK-KVGVIQFIKGA-WPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCC-eEEEEEEecCC-cccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 57788888999999999999887544333 34333322211 11122222222100000 0000000 01 12
Q ss_pred hhHHHHHHHhcCCc-eEEEEeCCCC--------hHHHHHHhcCCCCCCCCcEEEEEeCCc
Q 001979 104 KGCHMIRIKLRHKR-VLLVIDDVDE--------FDQLQALAGQRDWFGLGSRIIITTRDR 154 (987)
Q Consensus 104 ~~~~~l~~~L~~k~-~LlVlDdv~~--------~~~~~~l~~~~~~~~~gs~IiiTtR~~ 154 (987)
+..+..++.+...+ =|||||.+.. .+++-.++. ...++..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~---~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ---ERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH---hCCCCCEEEEECCCC
Confidence 23334455555544 4999999832 233333333 335678999999986
No 331
>PRK04328 hypothetical protein; Provisional
Probab=95.62 E-value=0.069 Score=56.44 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=34.6
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 21 QIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 21 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.|-++|..+-..-.++.|.|++|.|||+||.++..+...+-+ .++|++
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge-~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-PGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC-cEEEEE
Confidence 455556544445689999999999999999998775433444 667775
No 332
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.62 E-value=0.053 Score=62.35 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 19 LEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 19 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
++++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-. .++|++
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~-kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQM-KVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCC-cEEEEE
Confidence 45555666544345689999999999999999999887655434 577775
No 333
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.61 E-value=0.043 Score=54.30 Aligned_cols=119 Identities=14% Similarity=0.041 Sum_probs=60.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHH--h-cCCCccc---------c
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEI--L-LDKNVKI---------W 100 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l--~-~~~~~~~---------~ 100 (987)
...|.|+|..|-||||.|..++-+...+=- .+..+....... ..+-....+.+- .+ . ....... .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~-~V~ivQFlKg~~-~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGK-KVGVVQFIKGAW-STGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCC-eEEEEEEecCCC-ccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHH
Confidence 368889999999999999999987544333 344443332211 112222222210 00 0 0000000 0
Q ss_pred cchhhHHHHHHHhcCCc-eEEEEeCCCCh-----HHHHHHhcCCCCCCCCcEEEEEeCCc
Q 001979 101 DVHKGCHMIRIKLRHKR-VLLVIDDVDEF-----DQLQALAGQRDWFGLGSRIIITTRDR 154 (987)
Q Consensus 101 ~~~~~~~~l~~~L~~k~-~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IiiTtR~~ 154 (987)
......+..++.+...+ =|||||++-.. -..+.+...+....++..||+|=|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11122334445554444 59999998331 12233333233335678999999976
No 334
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.61 E-value=0.036 Score=60.79 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=33.3
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh--hc---CCCcceEEEE
Q 001979 21 QIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI--SY---QFDDGSSFLA 69 (987)
Q Consensus 21 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~--~~---~f~~~~~~~~ 69 (987)
.|-++|..+-....+.-|+|++|+|||+|+..++-.. .. .....++|++
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 3444554333455788899999999999999987532 21 1223788887
No 335
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.61 E-value=0.052 Score=57.52 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=22.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
.|.+.|++|+||||+|+++...+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999887543
No 336
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.60 E-value=0.85 Score=49.24 Aligned_cols=168 Identities=8% Similarity=0.072 Sum_probs=93.7
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhc-C--------CCcceEEEEehHhhhhccCHHHHHHHHHH
Q 001979 19 LEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISY-Q--------FDDGSSFLANVREVSQTRGLVALQEQLVS 89 (987)
Q Consensus 19 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~-~--------f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 89 (987)
++.+...+..+ .-.++..++|..|.||+++|+.+.+.+-. + .++...+++. ......+.++. ++..
T Consensus 5 ~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~---~g~~i~vd~Ir-~l~~ 79 (299)
T PRK07132 5 IKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI---FDKDLSKSEFL-SAIN 79 (299)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc---CCCcCCHHHHH-HHHH
Confidence 44555555432 22366779999999999999999998611 1 1111222210 00111222211 2222
Q ss_pred HHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH--HHHHHhcCCCCCCCCcEEEEEeCC-cccccc-cCcCce
Q 001979 90 EILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD--QLQALAGQRDWFGLGSRIIITTRD-RHLLVR-CDVEDT 165 (987)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IiiTtR~-~~v~~~-~~~~~~ 165 (987)
.+... ..-.+++=++|+||++... ...++...+..-.+++.+|++|.+ ..+... ......
T Consensus 80 ~~~~~----------------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~ 143 (299)
T PRK07132 80 KLYFS----------------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQV 143 (299)
T ss_pred HhccC----------------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEE
Confidence 21000 0011466688889987643 456666666555677777765544 444443 345678
Q ss_pred EEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHH
Q 001979 166 YMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEIL 215 (987)
Q Consensus 166 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 215 (987)
+++.+++.++..+.+... . .. .+.+..++..++|.=-|+..+
T Consensus 144 ~~f~~l~~~~l~~~l~~~----~-~~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSK----N-KE---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred EECCCCCHHHHHHHHHHc----C-CC---hhHHHHHHHHcCCHHHHHHHH
Confidence 999999999998877653 1 11 134566666777633455543
No 337
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.60 E-value=0.012 Score=60.04 Aligned_cols=37 Identities=24% Similarity=0.228 Sum_probs=17.8
Q ss_pred CCCCCCEEecCCC--CCCCCCCC-CCCCCcccEEeccCCc
Q 001979 441 NMRHLKFIKLSHS--VHLTKTPD-FTGVPKLERLVLDGCT 477 (987)
Q Consensus 441 ~l~~L~~L~Ls~~--~~~~~~~~-~~~l~~L~~L~L~~~~ 477 (987)
.|++||.|.++.| +....++. ...+|+|++|++++|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 4555555555555 33333322 3334555555555543
No 338
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.1 Score=57.24 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=29.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
..++++|+|+.|+||||++..++.....+-. .+.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~-~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNR-TVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEe
Confidence 4689999999999999999999987654433 456665
No 339
>PRK14974 cell division protein FtsY; Provisional
Probab=95.56 E-value=0.14 Score=56.09 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
..++|+++|++|+||||++..++..++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999998877654
No 340
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.52 E-value=0.13 Score=58.54 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=27.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhh--cCCCcceEEEE
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNIS--YQFDDGSSFLA 69 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~~ 69 (987)
.++++++|++|+||||++..++..+. ..-. .+.+++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~-~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKK-KVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEE
Confidence 46899999999999999999988765 2223 466665
No 341
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.52 E-value=0.034 Score=55.04 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.9
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
.-.+++|.|+.|.|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999998863
No 342
>PTZ00301 uridine kinase; Provisional
Probab=95.49 E-value=0.013 Score=59.86 Aligned_cols=29 Identities=24% Similarity=0.539 Sum_probs=25.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
..+|||.|.+|.||||+|+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 36899999999999999999998875444
No 343
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.49 E-value=0.036 Score=57.70 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=31.9
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 21 QIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 21 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.+.+.+..+-....++.|.|++|.||||+|.+++.....+-. .++++.
T Consensus 12 ~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~-~~~yi~ 59 (230)
T PRK08533 12 ELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGY-SVSYVS 59 (230)
T ss_pred eeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC-cEEEEe
Confidence 344445433344579999999999999998777665433323 566665
No 344
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.48 E-value=0.087 Score=52.28 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=26.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
++.+.|++|.||||+++.++..+...-. .+..++
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~-~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGK-KVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEE
Confidence 6789999999999999999998765532 344554
No 345
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.092 Score=57.25 Aligned_cols=98 Identities=24% Similarity=0.318 Sum_probs=56.5
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhc-CCC
Q 001979 18 RLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILL-DKN 96 (987)
Q Consensus 18 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~-~~~ 96 (987)
.+.++.+.|..+--.-.+|.|-|-+|||||||..+++.++..+- .+.++. ...+..++..+. .++.. ..+
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVs------GEES~~QiklRA-~RL~~~~~~ 148 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVS------GEESLQQIKLRA-DRLGLPTNN 148 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEe------CCcCHHHHHHHH-HHhCCCccc
Confidence 35566666644323447899999999999999999999987665 477765 222333332221 22111 112
Q ss_pred cccccchhhHHHHHHHh-cCCceEEEEeCC
Q 001979 97 VKIWDVHKGCHMIRIKL-RHKRVLLVIDDV 125 (987)
Q Consensus 97 ~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv 125 (987)
..... +...+.|.+.+ ..+.-++|+|-+
T Consensus 149 l~l~a-Et~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 149 LYLLA-ETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred eEEeh-hcCHHHHHHHHHhcCCCEEEEecc
Confidence 11111 12233344444 357789999987
No 346
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.45 E-value=0.012 Score=48.10 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
+|+|.|..|+||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 347
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.44 E-value=0.11 Score=50.94 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=45.4
Q ss_pred EEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcC
Q 001979 36 LGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRH 115 (987)
Q Consensus 36 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~ 115 (987)
+.|.|.+|.|||++|.++... ... .++++. .....+ .++++.+... ....... +...+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~-~~~y~a----t~~~~d-~em~~rI~~H-~~~R~~~-w~t~E~~~~l~~~l~~ 70 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGG-PVTYIA----TAEAFD-DEMAERIARH-RKRRPAH-WRTIETPRDLVSALKE 70 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCC-CeEEEE----ccCcCC-HHHHHHHHHH-HHhCCCC-ceEeecHHHHHHHHHh
Confidence 679999999999999999865 223 566765 222222 2455554443 2222222 2333444455555532
Q ss_pred --CceEEEEeCC
Q 001979 116 --KRVLLVIDDV 125 (987)
Q Consensus 116 --k~~LlVlDdv 125 (987)
+.-.|++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 2347999986
No 348
>PRK08233 hypothetical protein; Provisional
Probab=95.42 E-value=0.012 Score=58.98 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=23.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
..+|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 349
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.42 E-value=0.014 Score=65.88 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=39.4
Q ss_pred CCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 9 SEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
...++||+..++.+...+..+ .-|.|.|++|+|||++|+.+.....
T Consensus 19 ~~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhc
Confidence 467999999999998888654 3578999999999999999998754
No 350
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.42 E-value=0.1 Score=55.70 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=29.5
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.+.++++++|++|+||||++..++..++..-. .+.+++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~-~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGK-SVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEe
Confidence 34689999999999999999999987765433 455554
No 351
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.42 E-value=0.081 Score=56.56 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHH
Q 001979 31 DEARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
+++..|.+.|.+|.|||-||.+..-
T Consensus 243 ~dI~lV~L~G~AGtGKTlLALaAgl 267 (436)
T COG1875 243 DDIDLVSLGGKAGTGKTLLALAAGL 267 (436)
T ss_pred CCCCeEEeeccCCccHhHHHHHHHH
Confidence 6789999999999999999887754
No 352
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.41 E-value=0.056 Score=59.50 Aligned_cols=50 Identities=20% Similarity=0.356 Sum_probs=34.4
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC-----CcceEEEE
Q 001979 20 EQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQF-----DDGSSFLA 69 (987)
Q Consensus 20 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~ 69 (987)
..+.++|..+-....++-|+|++|+|||++|.+++....... ...++|++
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 344445543334567899999999999999999987643211 22678887
No 353
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.41 E-value=0.013 Score=58.93 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=53.3
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhc-CCCcccccchhhHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILL-DKNVKIWDVHKGCHMIRI 111 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~-~~~~~~~~~~~~~~~l~~ 111 (987)
...++|.|+.|.||||+++++...+... . +.+.+....+..... .... ++.. .............+.++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~-~~i~ied~~E~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-E-RIITIEDTAELQLPH------PNWV-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-C-CEEEECCccccCCCC------CCEE-EEEEecCCCCCCCccCHHHHHHH
Confidence 3689999999999999999999876532 2 344443222111100 0000 0000 000001111234456667
Q ss_pred HhcCCceEEEEeCCCChHHHHHHh
Q 001979 112 KLRHKRVLLVIDDVDEFDQLQALA 135 (987)
Q Consensus 112 ~L~~k~~LlVlDdv~~~~~~~~l~ 135 (987)
.++..+=.++++.+.+.+.++.+.
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHHH
Confidence 778888899999998877666544
No 354
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.40 E-value=0.033 Score=61.85 Aligned_cols=106 Identities=17% Similarity=0.245 Sum_probs=62.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEE-EEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSF-LANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIK 112 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 112 (987)
..|.|.|+.|.||||+++++...+..... ..++ +..-.+.... .. ..+ ....... .+.......++..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~-~~i~tiEdp~E~~~~-~~----~~~----i~q~evg-~~~~~~~~~l~~~ 191 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAA-GHIITIEDPIEYVHR-NK----RSL----INQREVG-LDTLSFANALRAA 191 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCC-CEEEEEcCChhhhcc-Cc----cce----EEccccC-CCCcCHHHHHHHh
Confidence 68999999999999999999987765555 4443 3211111100 00 000 0111111 1122345667888
Q ss_pred hcCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCC
Q 001979 113 LRHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRD 153 (987)
Q Consensus 113 L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~ 153 (987)
|+..+=.|++|++.+.+......... ..|-.++.|+-.
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha 229 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHT 229 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcC
Confidence 88999999999998877766543321 345555555543
No 355
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.38 E-value=0.048 Score=57.64 Aligned_cols=45 Identities=36% Similarity=0.396 Sum_probs=35.9
Q ss_pred HHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 24 LMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 24 ~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.+|..+-...+++=|+|+.|.||||+|.+++-.....-. .++|++
T Consensus 51 ~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~-~a~fID 95 (279)
T COG0468 51 EALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGG-KAAFID 95 (279)
T ss_pred HHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCC-eEEEEe
Confidence 344433345689999999999999999999887766666 889997
No 356
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.37 E-value=0.053 Score=66.52 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=38.4
Q ss_pred CCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 9 SEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+.++|....++++.+.+..-...-..|.|.|..|+|||++|+.+++.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3579999999999877665322233468899999999999999998853
No 357
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.37 E-value=0.079 Score=51.45 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=37.0
Q ss_pred hHHHHHHHhcCCceEEEEeC----CCChHHHHH--HhcCCCCCCCCcEEEEEeCCcccccccC
Q 001979 105 GCHMIRIKLRHKRVLLVIDD----VDEFDQLQA--LAGQRDWFGLGSRIIITTRDRHLLVRCD 161 (987)
Q Consensus 105 ~~~~l~~~L~~k~~LlVlDd----v~~~~~~~~--l~~~~~~~~~gs~IiiTtR~~~v~~~~~ 161 (987)
..-.|.+.+-+++-+++=|+ +|....|+- +...++ ..|+.||++|-|.++...+.
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 34456777778888888885 444444433 233332 56999999999998877653
No 358
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.36 E-value=0.11 Score=57.87 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=22.3
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..+++|+|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999764
No 359
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.35 E-value=0.02 Score=56.35 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=28.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhh-cCCCcceEEEE
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNIS-YQFDDGSSFLA 69 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~ 69 (987)
...+.+.|+.|+|||.+|+++++.+. .... ..+-++
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~-~~~~~d 39 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSER-PLIRID 39 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCC-EEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCcc-chHHHh
Confidence 45788999999999999999999886 4554 344443
No 360
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.35 E-value=0.045 Score=55.08 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=26.3
Q ss_pred EEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 36 LGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 36 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
+.|.|++|+|||++|.+++......-. .++|++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~-~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGE-PGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCC-cEEEEE
Confidence 679999999999999999886544434 677775
No 361
>PRK08356 hypothetical protein; Provisional
Probab=95.34 E-value=0.065 Score=54.37 Aligned_cols=21 Identities=43% Similarity=0.621 Sum_probs=19.4
Q ss_pred EEEEEEcCCcchHHHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVF 54 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~ 54 (987)
.+|+|.|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 362
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.32 E-value=0.064 Score=53.13 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.|.|.|++|.||||+|+.+.+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999983
No 363
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.31 E-value=0.022 Score=53.02 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=29.5
Q ss_pred hhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 17 YRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 17 ~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
++.+++-+.+...-....+|++.|.-|.||||+++.++..+
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34445545444322334689999999999999999999975
No 364
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.30 E-value=0.047 Score=54.12 Aligned_cols=104 Identities=14% Similarity=0.125 Sum_probs=55.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEeh--HhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANV--REVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIR 110 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~--~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 110 (987)
-.+++|.|+.|.|||||++.++--.+. .. +.+++... .-..+... ...-+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~-G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP-NG-DNDEWDGITPVYKPQYID-------------------LSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC-CC-cEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHH
Confidence 468999999999999999998865432 23 44444310 00011000 111112223445
Q ss_pred HHhcCCceEEEEeCCCC---hHH---HHHHhcCCCCCCCCcEEEEEeCCccccc
Q 001979 111 IKLRHKRVLLVIDDVDE---FDQ---LQALAGQRDWFGLGSRIIITTRDRHLLV 158 (987)
Q Consensus 111 ~~L~~k~~LlVlDdv~~---~~~---~~~l~~~~~~~~~gs~IiiTtR~~~v~~ 158 (987)
+.+..++-++++|+-.. ... +..+...... ..+..||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHH
Confidence 56667778999998632 222 2222222111 12367888888765444
No 365
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.29 E-value=0.058 Score=53.97 Aligned_cols=122 Identities=19% Similarity=0.282 Sum_probs=61.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEeh--Hhhhh---ccCHHHHHHHHHHHHhcCC--Ccccccch-
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANV--REVSQ---TRGLVALQEQLVSEILLDK--NVKIWDVH- 103 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~--~~~~~---~~~~~~l~~~ll~~l~~~~--~~~~~~~~- 103 (987)
...+++|.|+.|.|||||++.++-... ... +.+++... ..... ...+..+ .+++..+.... .....+..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~-G~v~~~g~~~~~~~~~~~~~~i~~~-~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK-PSS-GEILLDGKDLASLSPKELARKIAYV-PQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCC-cEEEECCEECCcCCHHHHHHHHhHH-HHHHHHcCCHhHhcCCcccCCH
Confidence 446899999999999999999987543 234 55555311 10000 0011111 11232221111 01111111
Q ss_pred --hhHHHHHHHhcCCceEEEEeCCCC---h---HHHHHHhcCCCCCCCCcEEEEEeCCcccc
Q 001979 104 --KGCHMIRIKLRHKRVLLVIDDVDE---F---DQLQALAGQRDWFGLGSRIIITTRDRHLL 157 (987)
Q Consensus 104 --~~~~~l~~~L~~k~~LlVlDdv~~---~---~~~~~l~~~~~~~~~gs~IiiTtR~~~v~ 157 (987)
...-.+.+.+...+-++++|+-.. . +.+..+...+.. ..+..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHH
Confidence 222234556667888999998632 2 223333322211 1267888888876544
No 366
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.29 E-value=0.011 Score=53.37 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=22.0
Q ss_pred EEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 36 LGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 36 v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
|-|+|++|+|||++|+.++..+.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998765443
No 367
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.27 E-value=0.017 Score=59.45 Aligned_cols=27 Identities=37% Similarity=0.704 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+..+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 368
>PRK10867 signal recognition particle protein; Provisional
Probab=95.25 E-value=0.18 Score=57.22 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
...+|.++|++|+||||.|..++..++.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36799999999999999999998877655
No 369
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.24 E-value=0.039 Score=59.65 Aligned_cols=55 Identities=27% Similarity=0.311 Sum_probs=39.7
Q ss_pred CCCCccccchhHHHH---HHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC
Q 001979 8 ASEKLVGMDYRLEQI---YLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFD 62 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l---~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 62 (987)
....+||..+..+.. .+++..+.-..|.|.|.|++|.|||+||.++++.+....+
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~P 79 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVP 79 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCC
Confidence 457899988777663 4555554334589999999999999999999999987776
No 370
>PRK03839 putative kinase; Provisional
Probab=95.20 E-value=0.016 Score=58.11 Aligned_cols=24 Identities=33% Similarity=0.743 Sum_probs=21.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999863
No 371
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.18 E-value=0.066 Score=53.16 Aligned_cols=128 Identities=18% Similarity=0.229 Sum_probs=63.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcc--------cccch
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVK--------IWDVH 103 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~--------~~~~~ 103 (987)
...+++|.|+.|.|||||++.++-..+ ... +.+++.... .. ........+.+ .-+......- ...-+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~-G~i~~~g~~-~~-~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR-PTS-GRVRLDGAD-IS-QWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-CCC-CeEEECCEE-cc-cCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHH
Confidence 346899999999999999999987543 223 455543110 00 00111111110 0000000000 00011
Q ss_pred hhHHHHHHHhcCCceEEEEeCCCC------hHHHHHHhcCCCCCCCCcEEEEEeCCcccccccCcCceEEc
Q 001979 104 KGCHMIRIKLRHKRVLLVIDDVDE------FDQLQALAGQRDWFGLGSRIIITTRDRHLLVRCDVEDTYMV 168 (987)
Q Consensus 104 ~~~~~l~~~L~~k~~LlVlDdv~~------~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~~~~~~~~~l 168 (987)
...-.+.+.+..++=++++|+-.. ...+..+...+. ..|..||++|.+..... . .++++.+
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 122234455566777889998632 222333333222 24778888888876553 2 4555544
No 372
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.18 E-value=0.072 Score=53.00 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=27.2
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEE
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFL 68 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 68 (987)
..+|+|.|++|+||||+|+.++..+...-. .+.++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~-~v~~i 38 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGY-PVEVL 38 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEE
Confidence 468999999999999999999998754322 34445
No 373
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.16 E-value=0.049 Score=56.35 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCceEEEEeC----CCC--hHHHHHHhcCCCCCCCCcEEEEEeCCcccccc
Q 001979 106 CHMIRIKLRHKRVLLVIDD----VDE--FDQLQALAGQRDWFGLGSRIIITTRDRHLLVR 159 (987)
Q Consensus 106 ~~~l~~~L~~k~~LlVlDd----v~~--~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~ 159 (987)
...|.+.|.++.=|++||+ ||. ...+..+...+. ..|..|++.|-|-+....
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 4467788899999999996 333 344555555544 339999999998755443
No 374
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.14 E-value=0.019 Score=58.85 Aligned_cols=28 Identities=39% Similarity=0.685 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
+...+|+|.|++|+||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999999999998764
No 375
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.14 E-value=0.03 Score=58.45 Aligned_cols=32 Identities=34% Similarity=0.446 Sum_probs=27.3
Q ss_pred CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 30 LDEARILGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 30 ~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
.+...+|+|.|+.|.|||||++.+...++...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 35678999999999999999999998776543
No 376
>PRK04040 adenylate kinase; Provisional
Probab=95.11 E-value=0.031 Score=56.11 Aligned_cols=29 Identities=21% Similarity=0.551 Sum_probs=24.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCC
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFD 62 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 62 (987)
.+|+|+|++|+||||+++.+.+++...+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~ 31 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYK 31 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCe
Confidence 68999999999999999999998753343
No 377
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.11 E-value=0.092 Score=50.76 Aligned_cols=88 Identities=20% Similarity=0.254 Sum_probs=45.6
Q ss_pred EEcCCcchHHHHHHHHHHHhhcCCCcceEEEE---ehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhc
Q 001979 38 ICGMGGIGKTTLARFVFDNISYQFDDGSSFLA---NVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLR 114 (987)
Q Consensus 38 I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~---~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~ 114 (987)
|.|++|+||||+|+.++.++ +...++ .+++...... .+-.++-.. +.... ....+-....+++++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~------~~~~is~~~llr~~~~~~s--~~g~~i~~~-l~~g~--~vp~~~v~~ll~~~l~ 69 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY------GLVHISVGDLLREEIKSDS--ELGKQIQEY-LDNGE--LVPDELVIELLKERLE 69 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH------TSEEEEHHHHHHHHHHTTS--HHHHHHHHH-HHTTS--S--HHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc------CcceechHHHHHHHHhhhh--HHHHHHHHH-HHhhc--cchHHHHHHHHHHHHh
Confidence 68999999999999999975 223343 1121111111 111222111 21111 1122334556666664
Q ss_pred CC--ceEEEEeCC-CChHHHHHHhc
Q 001979 115 HK--RVLLVIDDV-DEFDQLQALAG 136 (987)
Q Consensus 115 ~k--~~LlVlDdv-~~~~~~~~l~~ 136 (987)
.. .--+|||++ .+.+|.+.+..
T Consensus 70 ~~~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 70 QPPCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp SGGTTTEEEEESB-SSHHHHHHHHH
T ss_pred hhcccceeeeeeccccHHHHHHHHH
Confidence 32 445789999 45666666544
No 378
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.10 E-value=0.083 Score=57.08 Aligned_cols=100 Identities=23% Similarity=0.259 Sum_probs=55.6
Q ss_pred HHHHHHHhcCC-CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCC-
Q 001979 19 LEQIYLMLGTG-LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKN- 96 (987)
Q Consensus 19 ~~~l~~~L~~~-~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~- 96 (987)
.-.|...|..+ -+..+++-|+|+.|+||||||..+.......-. .++|++. ....+ ...++.+....+
T Consensus 38 ~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~-~~a~ID~----e~~ld-----~~~a~~lGvdl~r 107 (322)
T PF00154_consen 38 SPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGG-ICAFIDA----EHALD-----PEYAESLGVDLDR 107 (322)
T ss_dssp -HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES----SS--------HHHHHHTT--GGG
T ss_pred CcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccc-eeEEecC----cccch-----hhHHHhcCccccc
Confidence 34455566522 244589999999999999999999988766655 7888872 11111 222333211110
Q ss_pred ---cccccchhhHHHHHHHhcC-CceEEEEeCCCCh
Q 001979 97 ---VKIWDVHKGCHMIRIKLRH-KRVLLVIDDVDEF 128 (987)
Q Consensus 97 ---~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~~ 128 (987)
..+...++....+...++. .--+||+|-|...
T Consensus 108 llv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 108 LLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred eEEecCCcHHHHHHHHHHHhhcccccEEEEecCccc
Confidence 1122234444555555554 4469999998553
No 379
>PTZ00035 Rad51 protein; Provisional
Probab=95.09 E-value=0.097 Score=57.71 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhc-----CCCcceEEEE
Q 001979 19 LEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISY-----QFDDGSSFLA 69 (987)
Q Consensus 19 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~-----~f~~~~~~~~ 69 (987)
.+.+-++|..+-....++.|+|++|.|||||+..++-...- .-...++|++
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyId 159 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYID 159 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEE
Confidence 34455566544445689999999999999999988764321 1222556876
No 380
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.08 E-value=0.016 Score=59.45 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=21.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
.++++|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999985
No 381
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.07 E-value=0.061 Score=57.82 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=71.7
Q ss_pred CCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHH
Q 001979 10 EKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVS 89 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 89 (987)
+.++-.....+++.+.|...-...+.|.|.|+.|.||||+++++...+...-. .++-+....|..-.
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~-~iv~iEd~~E~~l~------------ 170 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDE-RIVTIEDPPELRLP------------ 170 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTS-EEEEEESSS-S--S------------
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccccc-ceEEeccccceeec------------
Confidence 44444444555666666432123478999999999999999999988766512 34444422221100
Q ss_pred HHhcCCCccc-ccchhhHHHHHHHhcCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEE-EEEeC
Q 001979 90 EILLDKNVKI-WDVHKGCHMIRIKLRHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRI-IITTR 152 (987)
Q Consensus 90 ~l~~~~~~~~-~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~I-iiTtR 152 (987)
. ........ .+.....+.++..|+...=.||++++.+.+..+.+... ..|..+ +-|..
T Consensus 171 ~-~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~H 230 (270)
T PF00437_consen 171 G-PNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLH 230 (270)
T ss_dssp C-SSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE
T ss_pred c-cceEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeee
Confidence 0 00000011 13345566788889988899999999888877774433 346677 55544
No 382
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.07 E-value=0.18 Score=54.20 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=29.9
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...++.|.|.+|+||||+|.+++.....+....++|++
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 44688899999999999999998876544332677876
No 383
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.07 E-value=0.053 Score=57.60 Aligned_cols=56 Identities=29% Similarity=0.279 Sum_probs=43.7
Q ss_pred CCCCCccccchhHHH---HHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC
Q 001979 7 SASEKLVGMDYRLEQ---IYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFD 62 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 62 (987)
...+.+||..+..+. +.+++..+.-..+.|.|+|++|.|||+||..+++.+...-+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 346789998877665 45666655445689999999999999999999998865544
No 384
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=0.0019 Score=65.72 Aligned_cols=79 Identities=25% Similarity=0.308 Sum_probs=41.7
Q ss_pred CcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCcc--ccC
Q 001979 466 PKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPS--IKF 543 (987)
Q Consensus 466 ~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~--i~~ 543 (987)
.+.++|++.||..... .....|+.|++|.|+-| .++++. .+..+++|++|+|+.|.|..+..- +.+
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvN-kIssL~---------pl~rCtrLkElYLRkN~I~sldEL~YLkn 86 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVN-KISSLA---------PLQRCTRLKELYLRKNCIESLDELEYLKN 86 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeecc-ccccch---------hHHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence 3445555655543221 12335666666666665 233322 246777777777777777655431 344
Q ss_pred CCCCCEEeccCCC
Q 001979 544 LSRLTVLTLRDCK 556 (987)
Q Consensus 544 l~~L~~L~L~~~~ 556 (987)
+++|+.|.|..|.
T Consensus 87 lpsLr~LWL~ENP 99 (388)
T KOG2123|consen 87 LPSLRTLWLDENP 99 (388)
T ss_pred CchhhhHhhccCC
Confidence 4444444444443
No 385
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.03 E-value=0.095 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.|.|.|++|+||||+|+.+++++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999875
No 386
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.02 E-value=0.13 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 387
>PRK00625 shikimate kinase; Provisional
Probab=94.97 E-value=0.02 Score=56.56 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
.|.|+||+|+||||+|+.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998863
No 388
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.96 E-value=0.079 Score=57.86 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhc--CC---CcceEEEE
Q 001979 19 LEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISY--QF---DDGSSFLA 69 (987)
Q Consensus 19 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~--~f---~~~~~~~~ 69 (987)
.+.+..+|..+-....++.|.|.+|+||||||..++..... .. ...++|++
T Consensus 82 ~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyId 137 (316)
T TIGR02239 82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYID 137 (316)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEE
Confidence 44555566544455689999999999999999998763221 11 11468886
No 389
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.94 E-value=0.26 Score=55.88 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=23.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
..++.++|++|+||||.|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999998765
No 390
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.92 E-value=0.045 Score=53.73 Aligned_cols=115 Identities=16% Similarity=0.179 Sum_probs=58.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI 111 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 111 (987)
...+++|.|+.|.|||||.+.++-... ... +.+++.... .. .....+..+ ..+.-. .+...-+...-.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~-G~v~~~g~~-~~-~~~~~~~~~---~~i~~~--~qLS~G~~qrl~lar 95 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK-PDS-GEILVDGKE-VS-FASPRDARR---AGIAMV--YQLSVGERQMVEIAR 95 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCC-eEEEECCEE-CC-cCCHHHHHh---cCeEEE--EecCHHHHHHHHHHH
Confidence 346899999999999999999986542 233 555554210 10 001101000 000000 001111122223445
Q ss_pred HhcCCceEEEEeCCCC---h---HHHHHHhcCCCCCCCCcEEEEEeCCcccc
Q 001979 112 KLRHKRVLLVIDDVDE---F---DQLQALAGQRDWFGLGSRIIITTRDRHLL 157 (987)
Q Consensus 112 ~L~~k~~LlVlDdv~~---~---~~~~~l~~~~~~~~~gs~IiiTtR~~~v~ 157 (987)
.+..++-++++|+-.. . ..+..+...+. ..|..||++|.+...+
T Consensus 96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~ 145 (163)
T cd03216 96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEV 145 (163)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHH
Confidence 5667778889998632 2 22222222221 3477888999886543
No 391
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.14 Score=59.02 Aligned_cols=172 Identities=17% Similarity=0.175 Sum_probs=94.8
Q ss_pred CCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhcc
Q 001979 10 EKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTR 78 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (987)
..+-|-...+..+..+... +-...+-+..+|++|.|||-+|++|+++.. ..+|..+..+
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~-----a~~~~i~~pe----- 253 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG-----AFLFLINGPE----- 253 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC-----ceeEecccHH-----
Confidence 3455666677766665421 123567889999999999999999999854 2233322222
Q ss_pred CHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCC-ceEEEEeCCCChH------------HHHHHhcCCCCCCCCc
Q 001979 79 GLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHK-RVLLVIDDVDEFD------------QLQALAGQRDWFGLGS 145 (987)
Q Consensus 79 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k-~~LlVlDdv~~~~------------~~~~l~~~~~~~~~gs 145 (987)
+++...++ ....+...+.+..+.+ +..|.+|+++..- ...++.....+.++.+
T Consensus 254 --------li~k~~gE------te~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~ 319 (693)
T KOG0730|consen 254 --------LISKFPGE------TESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDA 319 (693)
T ss_pred --------HHHhcccc------hHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcC
Confidence 22221111 2233444555666667 8889999875421 1233333334444444
Q ss_pred EE--EEEeCCcccccc-c---CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCC
Q 001979 146 RI--IITTRDRHLLVR-C---DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGL 208 (987)
Q Consensus 146 ~I--iiTtR~~~v~~~-~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 208 (987)
++ |-|||.+.-+.. . ..++-+++.-.+..+-.++++...-.-+... ......++..+.|.
T Consensus 320 ~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~---~~~l~~iA~~thGy 385 (693)
T KOG0730|consen 320 KVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLS---DVDLEDIAVSTHGY 385 (693)
T ss_pred cEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcc---hhhHHHHHHHccch
Confidence 43 335555533322 1 2345667777777788887776653333331 12344555555554
No 392
>PRK06547 hypothetical protein; Provisional
Probab=94.92 E-value=0.04 Score=54.37 Aligned_cols=27 Identities=33% Similarity=0.257 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
....+|+|.|++|.||||+|+.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999999874
No 393
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.92 E-value=0.11 Score=57.06 Aligned_cols=49 Identities=20% Similarity=0.387 Sum_probs=34.4
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-----CCcceEEEE
Q 001979 21 QIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ-----FDDGSSFLA 69 (987)
Q Consensus 21 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~ 69 (987)
.+..+|..+-....++-|+|++|+||||+|.+++...... -...++|++
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 3445554333456888999999999999999998765321 122678887
No 394
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.91 E-value=0.021 Score=57.93 Aligned_cols=26 Identities=35% Similarity=0.344 Sum_probs=22.8
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
.++.|.|++|+||||++..++..+..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 47889999999999999999987643
No 395
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.91 E-value=0.055 Score=55.74 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=31.8
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 18 RLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 18 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
+..++.+.+....++..+|||.|+||+|||||..++...++.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3445555555444567899999999999999999999987765
No 396
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.90 E-value=0.053 Score=56.41 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
...+++|.|+.|+|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999986
No 397
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.89 E-value=0.022 Score=57.44 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
++.+|+|.|++|+||||+|+.+++++
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999875
No 398
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.89 E-value=0.047 Score=59.73 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=60.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhcc-CHHHHHHHHHHHHhcCCCcccccchhhHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTR-GLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI 111 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 111 (987)
...++|.|+.|.||||+++++...+.... ..+.+....+..... .... +...........-...+.+..
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~--~iv~ied~~El~~~~~~~~~--------l~~~~~~~~~~~~~~~~~l~~ 213 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE--RIITIEDTREIFLPHPNYVH--------LFYSKGGQGLAKVTPKDLLQS 213 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc--cEEEEcCccccCCCCCCEEE--------EEecCCCCCcCccCHHHHHHH
Confidence 36899999999999999999998764332 344444333321110 0000 000000001111233456677
Q ss_pred HhcCCceEEEEeCCCChHHHHHHhcCCCCCCCCcE-EEEEeCCc
Q 001979 112 KLRHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSR-IIITTRDR 154 (987)
Q Consensus 112 ~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~-IiiTtR~~ 154 (987)
.++...=.||+|.+-..+.++.+... . .|.. ++.|+...
T Consensus 214 ~Lr~~pd~ii~gE~r~~e~~~~l~a~-~---~g~~~~i~T~Ha~ 253 (308)
T TIGR02788 214 CLRMRPDRIILGELRGDEAFDFIRAV-N---TGHPGSITTLHAG 253 (308)
T ss_pred HhcCCCCeEEEeccCCHHHHHHHHHH-h---cCCCeEEEEEeCC
Confidence 78888889999999887666544332 2 2332 45565543
No 399
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.88 E-value=0.1 Score=59.72 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
..++|+|+|++|+||||++..++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999998876544
No 400
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.87 E-value=0.054 Score=61.92 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=53.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCccccc----chhhHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWD----VHKGCH 107 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~----~~~~~~ 107 (987)
.-+..+|+|++|+|||||++.+++.+.....+..+++..+.+-. ..+.++.+.+-.++.......... .....-
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERp--eEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERP--EEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCch--hhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 44678899999999999999999987655554555665544322 222333333211111111111100 111222
Q ss_pred HHHHHh--cCCceEEEEeCCCChH
Q 001979 108 MIRIKL--RHKRVLLVIDDVDEFD 129 (987)
Q Consensus 108 ~l~~~L--~~k~~LlVlDdv~~~~ 129 (987)
.+.+++ .++.+||++|++-...
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR~A 516 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITRLG 516 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchHHH
Confidence 333444 5789999999985543
No 401
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.87 E-value=0.097 Score=61.70 Aligned_cols=49 Identities=22% Similarity=0.107 Sum_probs=37.0
Q ss_pred CCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 8 ASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
..+.++|....++++.+.+..-...-..|.|+|..|+||+++|+++...
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 3468999999888887766431122245789999999999999997654
No 402
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.072 Score=52.87 Aligned_cols=118 Identities=17% Similarity=0.235 Sum_probs=59.6
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCC-c----c------cc
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKN-V----K------IW 100 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-~----~------~~ 100 (987)
...+++|.|+.|.|||||++.++-... ... +.+++.... ... .. ....+.+ .- ..+.. . . ..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~-G~i~~~g~~-~~~-~~-~~~~~~i-~~-~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK-PDS-GEIKVLGKD-IKK-EP-EEVKRRI-GY-LPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC-CCC-eEEEECCEE-ccc-ch-HhhhccE-EE-EecCCccccCCcHHHHhhcC
Confidence 346899999999999999999987542 233 555543110 000 00 0000000 00 00000 0 0 00
Q ss_pred cchhhHHHHHHHhcCCceEEEEeCCCC------hHHHHHHhcCCCCCCCCcEEEEEeCCccccc
Q 001979 101 DVHKGCHMIRIKLRHKRVLLVIDDVDE------FDQLQALAGQRDWFGLGSRIIITTRDRHLLV 158 (987)
Q Consensus 101 ~~~~~~~~l~~~L~~k~~LlVlDdv~~------~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~ 158 (987)
.-+...-.+.+.+..++=++++|+-.. ...+..+...+. ..|..||++|.+...+.
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHH
Confidence 111122245566677888999998632 122333333222 23678899998876544
No 403
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.86 E-value=0.18 Score=53.02 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=20.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
+..|+|++|+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999988653
No 404
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.84 E-value=0.023 Score=56.46 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
...|.|.|++|+||||+|+.+++++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999986
No 405
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.82 E-value=0.011 Score=59.31 Aligned_cols=21 Identities=33% Similarity=0.151 Sum_probs=19.0
Q ss_pred EEEEEcCCcchHHHHHHHHHH
Q 001979 35 ILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~ 55 (987)
++.|.|+.|.||||+.+.+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999984
No 406
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.084 Score=54.36 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=41.7
Q ss_pred CCCCccccchhHHHHHHHhcCC-----------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 8 ASEKLVGMDYRLEQIYLMLGTG-----------LDEARILGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
...++=|.++++++|++..... -...+-|.++|.+|.|||-||++|++.-+.-|
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 3467778999999999876431 12346677999999999999999999865544
No 407
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.80 E-value=0.13 Score=60.82 Aligned_cols=56 Identities=25% Similarity=0.290 Sum_probs=40.6
Q ss_pred ccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 14 GMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 14 Gr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
+...-+..|-++|..+-...+++.|.|.+|+|||++|.+++.....++...++|+.
T Consensus 12 ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 12 KLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred cccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 44445556666775544566899999999999999999998765444333677876
No 408
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.79 E-value=0.074 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
++++|.|+.|.||||+.+.+.-.+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998643
No 409
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.044 Score=53.39 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=63.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIK 112 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 112 (987)
..+++|.|..|.|||||++.+...+.. .. +.+++.... ... ....... ..+.--.. ...-+...-.+...
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~-~~-G~i~~~~~~-~~~-~~~~~~~----~~i~~~~q--lS~G~~~r~~l~~~ 94 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP-TS-GEILIDGKD-IAK-LPLEELR----RRIGYVPQ--LSGGQRQRVALARA 94 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-Cc-cEEEECCEE-ccc-CCHHHHH----hceEEEee--CCHHHHHHHHHHHH
Confidence 368999999999999999999876532 34 556654210 000 0011111 11000000 11111222234555
Q ss_pred hcCCceEEEEeCCCC---hH---HHHHHhcCCCCCCCCcEEEEEeCCcccccccCcCceEEc
Q 001979 113 LRHKRVLLVIDDVDE---FD---QLQALAGQRDWFGLGSRIIITTRDRHLLVRCDVEDTYMV 168 (987)
Q Consensus 113 L~~k~~LlVlDdv~~---~~---~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~~~~~~~~~l 168 (987)
+...+-++++|+... .. .+..+..... ..+..+|++|.+...+... .++++.+
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 666778999999742 22 2323222221 2257788888887655442 2444444
No 410
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.77 E-value=0.064 Score=54.64 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=40.4
Q ss_pred hhhHHHHHHHhcCCceEEEEeCC----CC--hHHHHHHhcCCCCCCCCcEEEEEeCCcccccccCcCceEEcC
Q 001979 103 HKGCHMIRIKLRHKRVLLVIDDV----DE--FDQLQALAGQRDWFGLGSRIIITTRDRHLLVRCDVEDTYMVE 169 (987)
Q Consensus 103 ~~~~~~l~~~L~~k~~LlVlDdv----~~--~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~~~~~~~~~l~ 169 (987)
+...-.|.+.|...+-+|+-|+= |. .+.+-.+..... ...|..||+.|-|+.++..+ +.++.+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 33445677888888999999963 22 233333333321 13488999999999888753 4455543
No 411
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.76 E-value=0.14 Score=55.47 Aligned_cols=89 Identities=21% Similarity=0.297 Sum_probs=55.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCC-cceEEEEehHhhhhc-cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFD-DGSSFLANVREVSQT-RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI 111 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 111 (987)
+.+.|.|+.|.||||+++++...+....+ ..++-+....|..-. .+.. ++... . ......+.++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~~~~~--~---~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------QLRTS--D---DAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------EEEec--C---CCCCHHHHHHH
Confidence 46779999999999999999998765432 134444433332210 0000 00000 0 11144567888
Q ss_pred HhcCCceEEEEeCCCChHHHHHHh
Q 001979 112 KLRHKRVLLVIDDVDEFDQLQALA 135 (987)
Q Consensus 112 ~L~~k~~LlVlDdv~~~~~~~~l~ 135 (987)
.|+...=.||++.+.+.+.++.+.
T Consensus 200 aLR~~pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 200 TLRLRPDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred HhcCCCCEEEEeccCCHHHHHHHH
Confidence 899888899999998887766543
No 412
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.67 E-value=0.026 Score=55.96 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999999875
No 413
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.65 E-value=0.078 Score=57.95 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.0
Q ss_pred EEEEcCCcchHHHHHHHHHHHhh
Q 001979 36 LGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 36 v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
+++.|++|.||||+|+.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998875
No 414
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.64 E-value=0.16 Score=49.02 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.0
Q ss_pred EEEEEcCCcchHHHHHHHHHHH
Q 001979 35 ILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3789999999999999999886
No 415
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.60 E-value=0.024 Score=69.37 Aligned_cols=183 Identities=18% Similarity=0.145 Sum_probs=86.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHH-hhcC---C-Cc-ceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDN-ISYQ---F-DD-GSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGC 106 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~-~~~~---f-~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~ 106 (987)
.++++|.|+.|.||||+.+.+.-. +..+ | +. ....+..........+..+ .+... ..+.....
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~---si~~~--------LStfS~~m 390 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQ---SIEQN--------LSTFSGHM 390 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHh---HHhhh--------hhHHHHHH
Confidence 478999999999999999999764 1111 1 00 0000110000100001000 11110 01111222
Q ss_pred HHHHHHhc--CCceEEEEeCCCC---hHHHHH----HhcCCCCCCCCcEEEEEeCCcccccccC-cCc--eEEcCCCCHH
Q 001979 107 HMIRIKLR--HKRVLLVIDDVDE---FDQLQA----LAGQRDWFGLGSRIIITTRDRHLLVRCD-VED--TYMVEKLNYN 174 (987)
Q Consensus 107 ~~l~~~L~--~k~~LlVlDdv~~---~~~~~~----l~~~~~~~~~gs~IiiTtR~~~v~~~~~-~~~--~~~l~~L~~~ 174 (987)
..+...+. ..+-|+++|+... ...-.+ +...+. ..|+.+|+||.+..+..... ... .+.+. ++.
T Consensus 391 ~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~- 466 (771)
T TIGR01069 391 KNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE- 466 (771)
T ss_pred HHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-
Confidence 23333443 4789999999843 222222 222221 35889999999876533211 111 11111 111
Q ss_pred HHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhhhcCCCHHHHHHHHHhhhc
Q 001979 175 EALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSFLFARSKAEWKDALDRLKY 236 (987)
Q Consensus 175 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~~~~~w~~~l~~l~~ 236 (987)
+... + .+-+....+. ...+-+|++.+ |+|-.+.--|..+.+....++...+.++..
T Consensus 467 ~~l~-p-~Ykl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 467 ETLS-P-TYKLLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred CCCc-e-EEEECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111 1 0111112222 12456666665 788888888877766555566666665543
No 416
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.60 E-value=0.19 Score=55.33 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=24.3
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhh--cCCCcceEEEE
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNIS--YQFDDGSSFLA 69 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~~ 69 (987)
.++|.++|+.|+||||-..+++.++. ..-. .+.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~-kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKK-KVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCc-ceEEEE
Confidence 68999999999999965545554433 3333 455554
No 417
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.59 E-value=0.15 Score=52.35 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEcCCcchHHHHHHHHHHHh
Q 001979 36 LGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 36 v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998764
No 418
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.59 E-value=0.027 Score=53.00 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=22.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
+|.|.|++|.||||+|+.+++++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999999864
No 419
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.55 E-value=0.076 Score=54.21 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEEEcCCcchHHHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVF 54 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~ 54 (987)
.+++|+|+.|.|||||..+++
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999985
No 420
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.54 E-value=0.041 Score=61.03 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=40.2
Q ss_pred CCCccccchhHHHHHHHhcCC------------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 9 SEKLVGMDYRLEQIYLMLGTG------------LDEARILGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
...+||.+...+.+.-.+... ....+.|.++|++|+|||++|++++..+...|
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 467899999888886555421 11236788999999999999999999875444
No 421
>PRK13947 shikimate kinase; Provisional
Probab=94.54 E-value=0.028 Score=55.71 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=22.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
-|.|.|++|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998743
No 422
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.54 E-value=0.14 Score=51.78 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
...+++|.|+.|.|||||++.++-.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999853
No 423
>PRK14531 adenylate kinase; Provisional
Probab=94.53 E-value=0.14 Score=51.26 Aligned_cols=24 Identities=29% Similarity=0.182 Sum_probs=21.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
+.|.|.|++|.||||+|+.+++++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999875
No 424
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.53 E-value=0.32 Score=51.07 Aligned_cols=159 Identities=16% Similarity=0.207 Sum_probs=87.4
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
+...+.|+|-..-.+ +..++.......+.+.++|+.|+|||+-++.+++.. + ..|+- +.++.+....++.
T Consensus 68 ~~~~~~~l~tkt~r~-~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~----p--~~~l~---~~~p~~~a~~~i~ 137 (297)
T COG2842 68 EKLAPDFLETKTVRR-IFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN----P--NALLI---EADPSYTALVLIL 137 (297)
T ss_pred ccccccccccchhHh-HhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC----c--cceee---cCChhhHHHHHHH
Confidence 345567777654322 233333222334588999999999999999999753 2 33332 1344444455555
Q ss_pred HHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCcccccccCcC
Q 001979 86 QLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDRHLLVRCDVE 163 (987)
Q Consensus 86 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~~~~~ 163 (987)
.+....+..... ...+....+..++++..=+|+.|+.+.. ..++.+..... ..|.-++.--- +
T Consensus 138 ~i~~~~~~~~~~---~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d--~~Gi~~vLvG~----------p 202 (297)
T COG2842 138 IICAAAFGATDG---TINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHD--KTGIGVVLVGM----------P 202 (297)
T ss_pred HHHHHHhcccch---hHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHH--hhCceEEEecC----------h
Confidence 555444333222 3445566667777888889999998763 44555554433 22332222111 1
Q ss_pred ceEEcCCCCHHHHHHHHHHhhccCCC
Q 001979 164 DTYMVEKLNYNEALHLFSWKAFRKGH 189 (987)
Q Consensus 164 ~~~~l~~L~~~ea~~Lf~~~a~~~~~ 189 (987)
.....-.=...+...++.+..++...
T Consensus 203 rL~~~l~~~~~~~~rl~srv~v~~~~ 228 (297)
T COG2842 203 RLFKVLRRPEDELSRLYSRVRVGKLL 228 (297)
T ss_pred HHHhccccchHHHHHHHHHhhhHhhh
Confidence 11111112456677778777765543
No 425
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.52 E-value=0.1 Score=57.31 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhh--c---CCCcceEEEE
Q 001979 19 LEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNIS--Y---QFDDGSSFLA 69 (987)
Q Consensus 19 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~--~---~f~~~~~~~~ 69 (987)
...+.++|..+-....++-|+|.+|+|||++|..++-... . .-...++|++
T Consensus 109 ~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId 164 (342)
T PLN03186 109 SRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 164 (342)
T ss_pred CHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE
Confidence 3445555654434568889999999999999998875432 1 1122688887
No 426
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.52 E-value=0.11 Score=52.99 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=26.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCC
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFD 62 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 62 (987)
...+|.++||+|.||||+.+.++..+..++.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ 48 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKT 48 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccC
Confidence 4567889999999999999999998877765
No 427
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.52 E-value=0.18 Score=51.15 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=19.5
Q ss_pred EEEEEcCCcchHHHHHHHHHH
Q 001979 35 ILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~ 55 (987)
+++|+|+.|.|||||+++++-
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999874
No 428
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.50 E-value=0.032 Score=55.53 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999998753
No 429
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.48 E-value=0.11 Score=56.68 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=28.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...+++++|++|+||||++..++..++.+-. .+..+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~-~V~Li~ 149 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGK-KVLLAA 149 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCC-eEEEEe
Confidence 4689999999999999999999998765422 344443
No 430
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.47 E-value=0.043 Score=54.70 Aligned_cols=26 Identities=35% Similarity=0.617 Sum_probs=23.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
+|+|.|.+|.||||+|+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999987644
No 431
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.43 E-value=0.28 Score=55.34 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=28.4
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...+|.++|++|+||||+|..++..++.+-. .+..++
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~ 135 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVC 135 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEc
Confidence 3579999999999999999999987765432 344443
No 432
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.41 E-value=0.38 Score=58.03 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
.++|+++|+.|+||||.+.+++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999988663
No 433
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=1.2 Score=52.60 Aligned_cols=170 Identities=15% Similarity=0.135 Sum_probs=87.5
Q ss_pred cccchhHHHHHHHhcCCC-------CCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 13 VGMDYRLEQIYLMLGTGL-------DEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 13 vGr~~~~~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
.+++..+-++.+.+...- ....+|.++|.+|.||||++++++.++.-++= =+++..-++...+..+.
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~----evdc~el~~~s~~~~et-- 477 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLL----EVDCYELVAESASHTET-- 477 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceE----eccHHHHhhcccchhHH--
Confidence 456667777777776421 13468899999999999999999998754421 12211112221111111
Q ss_pred HHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCC-------hH------HHHHHhc-CCCCC-CCCcEEEEE
Q 001979 86 QLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDE-------FD------QLQALAG-QRDWF-GLGSRIIIT 150 (987)
Q Consensus 86 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~-------~~------~~~~l~~-~~~~~-~~gs~IiiT 150 (987)
.+.....+.-+-....|.+-|++- -+ .++.+.. ....+ .++..+|.|
T Consensus 478 ------------------kl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t 539 (953)
T KOG0736|consen 478 ------------------KLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVAT 539 (953)
T ss_pred ------------------HHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEe
Confidence 111111111122445555554421 11 1233332 11222 234444444
Q ss_pred eCC-cccccccC--cCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc
Q 001979 151 TRD-RHLLVRCD--VEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 151 tR~-~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 209 (987)
|.+ +++..... .-+.++++.++++|-.++|++++-...... .-..+.+++++.|.-
T Consensus 540 ~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~---~v~~k~~a~~t~gfs 598 (953)
T KOG0736|consen 540 TSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQ---DVNLKQLARKTSGFS 598 (953)
T ss_pred ccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccch---HHHHHHHHHhcCCCC
Confidence 433 33332222 225788999999999999999873322111 123456667776654
No 434
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.37 E-value=0.18 Score=58.78 Aligned_cols=57 Identities=19% Similarity=0.384 Sum_probs=36.9
Q ss_pred HHHHHhcCCceEEEEeC------CCChHHHHHHhcCCCCCCCCcEEEEEeCCcccccccCcCceEEcCC
Q 001979 108 MIRIKLRHKRVLLVIDD------VDEFDQLQALAGQRDWFGLGSRIIITTRDRHLLVRCDVEDTYMVEK 170 (987)
Q Consensus 108 ~l~~~L~~k~~LlVlDd------v~~~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~~~~~~~~~l~~ 170 (987)
.+...+-.+.=++|||. ++..+.++..+..+ ...||+.|-|+....... ..++.+++
T Consensus 449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-----~Gtvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-----EGTVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-----CCeEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 34455567788999995 44455566655543 345777789988877654 55666664
No 435
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.34 E-value=0.059 Score=54.82 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=29.5
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
....+|+|.|++|.||||+|+.+...+...-. ..++++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~-~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGV-STYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCC-CEEEEc
Confidence 35579999999999999999999997754433 456663
No 436
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.30 E-value=0.11 Score=58.97 Aligned_cols=93 Identities=26% Similarity=0.289 Sum_probs=52.5
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcc---cccc------
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVK---IWDV------ 102 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~---~~~~------ 102 (987)
.-+.++|.|.+|+|||||+..++........+.+++. .+.+- ...+.++.+++...-......- ..+.
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~-liGER--~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFA-GVGER--TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEE-EeccC--cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 4578999999999999999999887665545344443 33322 2334444454443211111100 0011
Q ss_pred --hhhHHHHHHHh---cCCceEEEEeCCCC
Q 001979 103 --HKGCHMIRIKL---RHKRVLLVIDDVDE 127 (987)
Q Consensus 103 --~~~~~~l~~~L---~~k~~LlVlDdv~~ 127 (987)
....-.+.+.+ +++.+||++|++-.
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 01122344444 67999999999854
No 437
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.29 E-value=0.21 Score=50.07 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
...+|+|.|.+|.||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4479999999999999999999987653
No 438
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.28 E-value=0.03 Score=57.79 Aligned_cols=25 Identities=40% Similarity=0.563 Sum_probs=22.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
+|||.|.+|+||||+|+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999998753
No 439
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.28 E-value=0.076 Score=54.11 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
...+++|.|..|.|||||++.++-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999998865
No 440
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.27 E-value=0.1 Score=62.88 Aligned_cols=52 Identities=27% Similarity=0.319 Sum_probs=38.1
Q ss_pred hhHHHHHHHhc-CCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 17 YRLEQIYLMLG-TGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 17 ~~~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.-...|..+|. .+-...+++-|+|++|+||||||..++......-. .++|++
T Consensus 43 TGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~-~v~yId 95 (790)
T PRK09519 43 TGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG-VAAFID 95 (790)
T ss_pred CCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-cEEEEC
Confidence 33456666775 33355689999999999999999888776544445 778886
No 441
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.24 E-value=0.28 Score=49.68 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=20.3
Q ss_pred EEEEcCCcchHHHHHHHHHHHh
Q 001979 36 LGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 36 v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
|.|.|++|+||||+|+.+++++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999874
No 442
>PRK14528 adenylate kinase; Provisional
Probab=94.23 E-value=0.19 Score=50.53 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
+.|.|.|++|+||||+|+.+++++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998775
No 443
>PRK05439 pantothenate kinase; Provisional
Probab=94.23 E-value=0.064 Score=57.85 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=25.2
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
+...+|||.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999887654
No 444
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.22 E-value=0.21 Score=60.83 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=38.0
Q ss_pred CCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 9 SEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+.++|.+..+.++.+.+..-......|.|+|..|+||+++|+++.+.-
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4679999999888877665422222457899999999999999998853
No 445
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.20 E-value=0.082 Score=57.08 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=36.8
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
|...+.++=.......+...+..+ +.|.|.|++|+||||+|+.++..+...|
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 333444554545566666666432 4688999999999999999999875444
No 446
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.19 E-value=0.055 Score=60.06 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=40.6
Q ss_pred CCCccccchhHHHHHHHhcCC--------C----CCeEEEEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 9 SEKLVGMDYRLEQIYLMLGTG--------L----DEARILGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~--------~----~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
...++|.+...+.+..++... . ...+.|.+.|++|+|||++|+.++..+...|
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 467999999999888766320 0 1136789999999999999999999865443
No 447
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.16 E-value=0.071 Score=57.82 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=35.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
.+++.+.|.||+||||+|.+.+-....... .+.-++ ....+++.++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~-kvLlvS----tDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGK-KVLLVS----TDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCC-cEEEEE----eCCCCchHhhhc
Confidence 478999999999999999998887766665 555554 444455555443
No 448
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.16 E-value=0.23 Score=52.09 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
...+++|.|+.|.|||||++.++-.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999864
No 449
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.16 E-value=0.12 Score=58.88 Aligned_cols=93 Identities=30% Similarity=0.291 Sum_probs=52.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcc---cccc------
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVK---IWDV------ 102 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~---~~~~------ 102 (987)
.-+.++|.|.+|+|||||+..++.....+..+.++++- +.+- .....++.+++...-......- ..+.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~l-iGER--~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAG-VGER--SREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEc-CCcc--hHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 45789999999999999999999877644443555543 3221 2334444444443211111100 0011
Q ss_pred --hhhHHHHHHHh---cCCceEEEEeCCCC
Q 001979 103 --HKGCHMIRIKL---RHKRVLLVIDDVDE 127 (987)
Q Consensus 103 --~~~~~~l~~~L---~~k~~LlVlDdv~~ 127 (987)
....-.+.+++ .++.+|+++|++-.
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 11122334444 37899999999844
No 450
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.13 E-value=0.12 Score=60.29 Aligned_cols=52 Identities=23% Similarity=0.276 Sum_probs=40.3
Q ss_pred hhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 17 YRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 17 ~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.-++++.++|..+-..-.++.|.|++|+||||||.+++.....+-+ .++++.
T Consensus 247 tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge-~~~y~s 298 (484)
T TIGR02655 247 SGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKE-RAILFA 298 (484)
T ss_pred CChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEE
Confidence 4456677777665556689999999999999999999987755555 667765
No 451
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.12 E-value=0.035 Score=55.38 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=21.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 452
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.12 E-value=0.19 Score=50.98 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.-.+++|.|+.|.|||||.+.++-..
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44789999999999999999998654
No 453
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.10 E-value=0.045 Score=54.92 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=29.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEE
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFL 68 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 68 (987)
.|+|+|+|+.|+|||||++.+......+|. .++.-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~-~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFG-RVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEE-EEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccc-cceee
Confidence 478999999999999999999999888886 44443
No 454
>PLN02674 adenylate kinase
Probab=94.10 E-value=0.32 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
...|.|.|++|.||||+|+.++.++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 3557899999999999999999864
No 455
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.10 E-value=0.034 Score=52.64 Aligned_cols=27 Identities=26% Similarity=0.607 Sum_probs=22.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
.|+|+|+.|+|||||++.+...+...|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998754443
No 456
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.09 E-value=0.32 Score=48.72 Aligned_cols=110 Identities=18% Similarity=0.168 Sum_probs=58.9
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcC---CC-cceEEEEehHhhhhc-cCHHHHHHHHHHHHhcCCCcccccchhhHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQ---FD-DGSSFLANVREVSQT-RGLVALQEQLVSEILLDKNVKIWDVHKGCHM 108 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~---f~-~~~~~~~~~~~~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 108 (987)
.-..|.|++|+||||+.+.++.-++.. |. -.++.++-..+.... .+..+.....-.+++. .......+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld-------~cpk~~gm 210 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLD-------PCPKAEGM 210 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcc-------cchHHHHH
Confidence 336789999999999999999865443 32 234444422222111 1111111111111100 01111222
Q ss_pred HHHHhcCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCC
Q 001979 109 IRIKLRHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRD 153 (987)
Q Consensus 109 l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~ 153 (987)
+...-...+=.+|+|.+-..++..++.... ..|.++|.|..-
T Consensus 211 mmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 211 MMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred HHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 223333466789999998887776666553 568888777553
No 457
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.09 E-value=0.038 Score=53.06 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=21.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
+|.|.|++|.||||+|+.+..++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999875
No 458
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.08 E-value=0.081 Score=56.26 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=30.0
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
....++.|.|++|+||||+|.+++.....+-+ .++|++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge-~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGN-PVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCC-cEEEEE
Confidence 45578999999999999999998776444434 678876
No 459
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.08 E-value=0.044 Score=56.45 Aligned_cols=118 Identities=14% Similarity=0.039 Sum_probs=58.9
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHH-HhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCc--ccccchhhHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFD-NISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNV--KIWDVHKGCHM 108 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~--~~~~~~~~~~~ 108 (987)
..++++|.|+.|.||||+.+.+.- .+..+-. ...|-..+ . .....+++..+....+. ...........
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G-~~v~a~~~-----~---~~~~~~i~~~~~~~d~~~~~~StF~~e~~~ 100 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIG-SFVPASSA-----T---LSIFDSVLTRMGASDSIQHGMSTFMVELSE 100 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCC-CEEEcCce-----E---EeccceEEEEecCccccccccchHHHHHHH
Confidence 346889999999999999999987 3333222 22222100 0 00011111111111110 00111222333
Q ss_pred HHHHhc--CCceEEEEeCCCC----hHH---HHHHhcCCCCCCCCcEEEEEeCCcccccc
Q 001979 109 IRIKLR--HKRVLLVIDDVDE----FDQ---LQALAGQRDWFGLGSRIIITTRDRHLLVR 159 (987)
Q Consensus 109 l~~~L~--~k~~LlVlDdv~~----~~~---~~~l~~~~~~~~~gs~IiiTtR~~~v~~~ 159 (987)
+...++ .++-|+++|+... .+. ..++...+.. ..++.+|++|.+..+...
T Consensus 101 ~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 101 TSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHH
Confidence 444443 5789999999621 111 1222222221 257899999999876543
No 460
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.07 E-value=0.33 Score=47.74 Aligned_cols=80 Identities=10% Similarity=0.084 Sum_probs=44.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccch---hhHHHHHH
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVH---KGCHMIRI 111 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~---~~~~~l~~ 111 (987)
++.|.|.+|.||||+|..+..+... ...++. .....-.++++++-...... ...+...+ +....+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~----~~~~ia-----t~~~~~~e~~~ri~~h~~~R-~~~w~t~E~~~~l~~~i~~ 72 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL----QVLYIA-----TAQPFDDEMAARIAHHRQRR-PAHWQTVEEPLDLAELLRA 72 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC----CcEeCc-----CCCCChHHHHHHHHHHHhcC-CCCCeEecccccHHHHHHh
Confidence 6889999999999999999876421 234443 11223345556665553222 22222222 23333433
Q ss_pred HhcCCceEEEEeCC
Q 001979 112 KLRHKRVLLVIDDV 125 (987)
Q Consensus 112 ~L~~k~~LlVlDdv 125 (987)
...+ .-++++|.+
T Consensus 73 ~~~~-~~~VlID~L 85 (170)
T PRK05800 73 DAAP-GRCVLVDCL 85 (170)
T ss_pred hcCC-CCEEEehhH
Confidence 3333 337888986
No 461
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.05 E-value=0.061 Score=52.66 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
...+++|+|..|+|||||++.+...++.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999988765
No 462
>PRK13949 shikimate kinase; Provisional
Probab=94.04 E-value=0.044 Score=54.06 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
.|.|+|++|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999999864
No 463
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.04 E-value=0.042 Score=53.93 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=20.8
Q ss_pred EEEEcCCcchHHHHHHHHHHHhhc
Q 001979 36 LGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 36 v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
|.|.|.+|+||||+++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 464
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.24 Score=53.61 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=68.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI 111 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 111 (987)
..|-|..+||+|.|||-.|+.++.+-.-.|. + ....++.-+-.+-. ..+..+.+
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA---~--------mTGGDVAPlG~qaV---------------TkiH~lFD 436 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYA---I--------MTGGDVAPLGAQAV---------------TKIHKLFD 436 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCcee---h--------hcCCCccccchHHH---------------HHHHHHHH
Confidence 4578999999999999999999986322221 1 00111111111111 11223334
Q ss_pred Hhc--CCceEEEEeCCCCh--------------HHHHHHhcCCCCCCCCcEEEEEe-CCccccccc--CcCceEEcCCCC
Q 001979 112 KLR--HKRVLLVIDDVDEF--------------DQLQALAGQRDWFGLGSRIIITT-RDRHLLVRC--DVEDTYMVEKLN 172 (987)
Q Consensus 112 ~L~--~k~~LlVlDdv~~~--------------~~~~~l~~~~~~~~~gs~IiiTt-R~~~v~~~~--~~~~~~~l~~L~ 172 (987)
+-+ .+..|+.+|..|.. ..+.+++.......+.-.+++.| |...+-... ..+.+++.+--.
T Consensus 437 WakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPG 516 (630)
T KOG0742|consen 437 WAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPG 516 (630)
T ss_pred HHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCC
Confidence 332 46688999987542 12555554433333333334444 433322221 355677777777
Q ss_pred HHHHHHHHHHhh
Q 001979 173 YNEALHLFSWKA 184 (987)
Q Consensus 173 ~~ea~~Lf~~~a 184 (987)
.+|-..|+..+.
T Consensus 517 eEERfkll~lYl 528 (630)
T KOG0742|consen 517 EEERFKLLNLYL 528 (630)
T ss_pred hHHHHHHHHHHH
Confidence 888888776664
No 465
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.02 E-value=0.043 Score=54.86 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
++++|.|++|+||||+|+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988753
No 466
>PRK14526 adenylate kinase; Provisional
Probab=94.02 E-value=0.23 Score=50.75 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEcCCcchHHHHHHHHHHHh
Q 001979 36 LGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 36 v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
|+|.|++|+||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998764
No 467
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.01 E-value=0.12 Score=57.52 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=56.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI 111 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 111 (987)
..+-+-|||..|.|||.|.-.+|+.+..+-. ..+... .-..++.+.+-.. . ...+....+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k-~R~HFh--------~Fm~~vh~~l~~~-~--------~~~~~l~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK-RRVHFH--------EFMLDVHSRLHQL-R--------GQDDPLPQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccc-cccccc--------HHHHHHHHHHHHH-h--------CCCccHHHHHH
Confidence 4678999999999999999999997543111 111110 0111222222221 1 12234556667
Q ss_pred HhcCCceEEEEeCCC--Ch---HHHHHHhcCCCCCCCCcEEEEEeC
Q 001979 112 KLRHKRVLLVIDDVD--EF---DQLQALAGQRDWFGLGSRIIITTR 152 (987)
Q Consensus 112 ~L~~k~~LlVlDdv~--~~---~~~~~l~~~~~~~~~gs~IiiTtR 152 (987)
.+.++..||.+|++. +. .-+..+...+ +..|..+|.||.
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l--~~~gvvlVaTSN 166 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEAL--FKRGVVLVATSN 166 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHH--HHCCCEEEecCC
Confidence 777888899999863 32 2244444433 244655555554
No 468
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.01 E-value=0.23 Score=52.00 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
...+++|.|+.|.|||||++.++-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4468999999999999999999754
No 469
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.00 E-value=0.11 Score=54.31 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC
Q 001979 19 LEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFD 62 (987)
Q Consensus 19 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 62 (987)
..++...+....++..+|||.|.||+||+||.-++..++..+=.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 34555666555567889999999999999999999988755543
No 470
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.99 E-value=0.036 Score=56.45 Aligned_cols=23 Identities=43% Similarity=0.754 Sum_probs=21.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
+|+|.|++|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 471
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.98 E-value=0.034 Score=56.81 Aligned_cols=22 Identities=36% Similarity=0.238 Sum_probs=20.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
.+++|.|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 472
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.97 E-value=0.12 Score=62.57 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
.-..|+|+|..|.|||||||.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999975
No 473
>PRK06217 hypothetical protein; Validated
Probab=93.97 E-value=0.046 Score=54.83 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
.|+|.|.+|.||||+|+++.+++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998753
No 474
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.96 E-value=0.12 Score=52.82 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=22.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
+.++|.|.+|+|||+|+..+.+...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~ 40 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD 40 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CEEEEEcCcccccchhhHHHHhccc
Confidence 6788999999999999999998763
No 475
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=93.96 E-value=0.16 Score=61.37 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
....++|+|..|.|||||++.+...
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999754
No 476
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.90 E-value=0.12 Score=57.66 Aligned_cols=23 Identities=48% Similarity=0.752 Sum_probs=20.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
...++|.|+.|.|||||||.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999999964
No 477
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.86 E-value=0.3 Score=50.10 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
...+++|.|+.|.|||||++.++-.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4468999999999999999999764
No 478
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.86 E-value=0.18 Score=52.55 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
+|+|.|.+|.||||+|+++.+.++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999887643
No 479
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.85 E-value=0.068 Score=59.23 Aligned_cols=49 Identities=31% Similarity=0.358 Sum_probs=39.4
Q ss_pred CCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCC
Q 001979 10 EKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFD 62 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 62 (987)
..++|.+..+..+...+..+ +.+.+.|++|+|||+||+.++..+...|-
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 45899888888877766543 46889999999999999999998765544
No 480
>PRK15115 response regulator GlrR; Provisional
Probab=93.85 E-value=0.46 Score=55.21 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=34.4
Q ss_pred CCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 10 EKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..++|....+.++.+....-...-..|.|.|.+|+|||++|+.+.+.-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357888877777665543322223457799999999999999998753
No 481
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.85 E-value=0.074 Score=50.45 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
++|.|+|..|+|||||++.+.+.+..+-
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 4799999999999999999999876443
No 482
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.83 E-value=0.075 Score=60.12 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=37.1
Q ss_pred CCccccchhHHHHHHHhc-------CC-----C--CCeEEEEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 10 EKLVGMDYRLEQIYLMLG-------TG-----L--DEARILGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~-------~~-----~--~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
+.+||.+..++.+...+. .. . -..+.|.++|++|+|||++|+.++..+...|
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 568999988887754441 10 0 0125688999999999999999998764333
No 483
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=93.82 E-value=0.18 Score=47.45 Aligned_cols=34 Identities=21% Similarity=0.037 Sum_probs=25.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhc--CCCcceEEEE
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISY--QFDDGSSFLA 69 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~ 69 (987)
.+.|.|+.|.|||+.+..++.+... ... .++++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~-~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGG-QVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCC-CEEEEc
Confidence 4679999999999999998886543 333 555553
No 484
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.78 E-value=0.19 Score=51.27 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
.-.+++|.|+.|.|||||++.+.-..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 447999999999999999999987543
No 485
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.77 E-value=0.099 Score=54.65 Aligned_cols=37 Identities=30% Similarity=0.275 Sum_probs=25.3
Q ss_pred hhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 17 YRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 17 ~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
++.+.+...+... .+..|+|++|.||||++..+...+
T Consensus 5 ~Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 5 SQREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 4556666666432 278899999999998777777765
No 486
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.76 E-value=0.068 Score=58.10 Aligned_cols=35 Identities=31% Similarity=0.396 Sum_probs=27.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
|++.+.|-||+||||+|.+.+-....+-. .+.-++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~-rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGK-RTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS--EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCC-CeeEee
Confidence 68899999999999999999887766533 455444
No 487
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.76 E-value=0.11 Score=55.55 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=37.0
Q ss_pred HHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 23 YLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 23 ~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
-+++..+-+..+++.|.|.+|+|||++|.++..+...+.+ .+.|++
T Consensus 13 D~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge-~vlyvs 58 (260)
T COG0467 13 DEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGE-PVLYVS 58 (260)
T ss_pred HHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCC-cEEEEE
Confidence 3444444456789999999999999999999998777766 788886
No 488
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.76 E-value=0.042 Score=52.57 Aligned_cols=20 Identities=35% Similarity=0.735 Sum_probs=18.9
Q ss_pred EEEEEcCCcchHHHHHHHHH
Q 001979 35 ILGICGMGGIGKTTLARFVF 54 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~ 54 (987)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999998
No 489
>PF13245 AAA_19: Part of AAA domain
Probab=93.75 E-value=0.12 Score=42.98 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=17.7
Q ss_pred EEEEEEcCCcchHH-HHHHHHHHHh
Q 001979 34 RILGICGMGGIGKT-TLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKT-tLA~~v~~~~ 57 (987)
+++.|.|++|.||| |++..+.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 57888999999999 4555555444
No 490
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.73 E-value=0.052 Score=52.61 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.5
Q ss_pred EEEEcCCcchHHHHHHHHHHHh
Q 001979 36 LGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 36 v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999876
No 491
>PRK13975 thymidylate kinase; Provisional
Probab=93.73 E-value=0.057 Score=54.84 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=23.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
..|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998753
No 492
>PHA02244 ATPase-like protein
Probab=93.73 E-value=0.056 Score=59.04 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=32.6
Q ss_pred CCCccccchhHHH----HHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 9 SEKLVGMDYRLEQ----IYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 9 ~~~~vGr~~~~~~----l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
...++|....+.. +.+++..+ .-|.|+|++|+|||++|++++.....
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4556776555543 44444332 34778999999999999999997543
No 493
>PRK14529 adenylate kinase; Provisional
Probab=93.69 E-value=0.29 Score=50.31 Aligned_cols=90 Identities=19% Similarity=0.122 Sum_probs=47.3
Q ss_pred EEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhh-hhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhc
Q 001979 36 LGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREV-SQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLR 114 (987)
Q Consensus 36 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~ 114 (987)
|.|.|++|+||||+|+.++.++. +. +..--+..++. .....+....++++.+ . .....+-....+.+++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~--~~-~is~gdllr~~i~~~t~lg~~i~~~i~~----G--~lvpdei~~~lv~~~l~ 73 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD--LA-HIESGAIFREHIGGGTELGKKAKEYIDR----G--DLVPDDITIPMILETLK 73 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC--CC-CcccchhhhhhccCCChHHHHHHHHHhc----c--CcchHHHHHHHHHHHHh
Confidence 77899999999999999998864 22 11001111111 1112222233333322 1 11223334556667764
Q ss_pred CC-ceEEEEeCC-CChHHHHHH
Q 001979 115 HK-RVLLVIDDV-DEFDQLQAL 134 (987)
Q Consensus 115 ~k-~~LlVlDdv-~~~~~~~~l 134 (987)
+. .-=+|||++ -+.+|.+.+
T Consensus 74 ~~~~~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 74 QDGKNGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred ccCCCcEEEeCCCCCHHHHHHH
Confidence 32 345889998 445555544
No 494
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.67 E-value=0.18 Score=56.96 Aligned_cols=93 Identities=25% Similarity=0.291 Sum_probs=52.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCc---ccccch-----
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNV---KIWDVH----- 103 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~---~~~~~~----- 103 (987)
.-+.++|.|.+|+|||||+..+...........+++. .+.+- .....++.+++...-...... ...+..
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~a-lIGER--~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFA-GVGER--TREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEE-EecCC--chHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 4578999999999999999999987655445344444 33322 233444555544321111100 001110
Q ss_pred ---hhHHHHHHHh---cCCceEEEEeCCCC
Q 001979 104 ---KGCHMIRIKL---RHKRVLLVIDDVDE 127 (987)
Q Consensus 104 ---~~~~~l~~~L---~~k~~LlVlDdv~~ 127 (987)
...-.+.+.+ +++.+|+++||+-.
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 1122334444 46899999999954
No 495
>PRK01184 hypothetical protein; Provisional
Probab=93.67 E-value=0.23 Score=49.77 Aligned_cols=22 Identities=32% Similarity=0.744 Sum_probs=18.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
.+|+|.|++|.||||+|+ ++.+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 479999999999999987 4443
No 496
>COG3910 Predicted ATPase [General function prediction only]
Probab=93.66 E-value=0.59 Score=45.46 Aligned_cols=62 Identities=24% Similarity=0.346 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCceEEEEeCCCC----hHHHHHHhcCCCCCCCCcEEEEEeCCcccccccCcCceEEcC
Q 001979 106 CHMIRIKLRHKRVLLVIDDVDE----FDQLQALAGQRDWFGLGSRIIITTRDRHLLVRCDVEDTYMVE 169 (987)
Q Consensus 106 ~~~l~~~L~~k~~LlVlDdv~~----~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~~~~~~~~~l~ 169 (987)
...+.+++.++. +-|||.=+. ..|++-+.....-...|+.|||.|.++-++.. ....+|++.
T Consensus 137 ~~i~~~rf~~~G-iYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAi-P~A~I~~~~ 202 (233)
T COG3910 137 LAIFHNRFNGQG-IYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAI-PGAEIYEIS 202 (233)
T ss_pred HHHHHHHhccCc-eEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeC-CCcEEEEEe
Confidence 445556665554 667898644 34555443333233568999999998865543 334455544
No 497
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.65 E-value=0.17 Score=54.93 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=37.8
Q ss_pred hHHHHHHHhcCCceEEEEeCCCCh-HH--HHHHhcCCCCC--CCCcEEEEEeCCcccccccCcCceE
Q 001979 105 GCHMIRIKLRHKRVLLVIDDVDEF-DQ--LQALAGQRDWF--GLGSRIIITTRDRHLLVRCDVEDTY 166 (987)
Q Consensus 105 ~~~~l~~~L~~k~~LlVlDdv~~~-~~--~~~l~~~~~~~--~~gs~IiiTtR~~~v~~~~~~~~~~ 166 (987)
....|...++.+.-+++.|.+... +. ...++..+... ..|..+++.|+.+++.+++..+..+
T Consensus 514 eR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 514 ERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred HHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeE
Confidence 345677778888889999997442 11 11111111111 2577788888888888887776544
No 498
>PRK13768 GTPase; Provisional
Probab=93.65 E-value=0.089 Score=55.69 Aligned_cols=35 Identities=29% Similarity=0.261 Sum_probs=26.9
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.+++|+|+||+||||++..+...++.+-. .++.++
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~-~v~~i~ 37 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGY-DVAIVN 37 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCC-ceEEEE
Confidence 57899999999999999999987765433 344443
No 499
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.65 E-value=0.1 Score=52.50 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=25.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.|+|+|-||+||||+|..++.++..+-...+.-++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVD 36 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVD 36 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEe
Confidence 58999999999999999977776555321344444
No 500
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.62 E-value=0.061 Score=55.06 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=23.9
Q ss_pred CCCCeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 29 GLDEARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 29 ~~~~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
+....+.|+|.|++|+|||||++.+.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3456789999999999999999999764
Done!