Query 001979
Match_columns 987
No_of_seqs 708 out of 5499
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 07:13:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 6.4E-41 2.2E-45 396.5 21.5 298 13-325 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 6.5E-35 2.2E-39 383.1 23.4 308 4-324 118-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 3.7E-35 1.3E-39 348.3 16.0 280 10-317 128-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.5E-33 5E-38 339.1 21.9 333 4-350 118-497 (591)
5 3rgz_A Protein brassinosteroid 100.0 1.5E-30 5.1E-35 321.9 24.8 378 369-747 239-721 (768)
6 3rgz_A Protein brassinosteroid 100.0 1.2E-30 4.2E-35 322.7 23.7 367 368-743 309-740 (768)
7 4eco_A Uncharacterized protein 100.0 3.4E-30 1.2E-34 311.3 26.3 296 419-741 248-577 (636)
8 4ecn_A Leucine-rich repeat pro 100.0 8.5E-29 2.9E-33 303.6 29.2 337 413-768 440-840 (876)
9 4ecn_A Leucine-rich repeat pro 100.0 4.7E-29 1.6E-33 305.9 26.6 335 370-742 441-839 (876)
10 3t6q_A CD180 antigen; protein- 100.0 8.8E-28 3E-32 290.3 36.3 365 354-720 35-460 (606)
11 4eco_A Uncharacterized protein 100.0 6.3E-29 2.2E-33 300.2 24.6 336 370-742 199-599 (636)
12 3vq2_A TLR4, TOLL-like recepto 100.0 3E-28 1E-32 294.3 27.8 388 353-747 33-537 (606)
13 3t6q_A CD180 antigen; protein- 100.0 1.1E-27 3.6E-32 289.6 31.8 241 491-740 255-510 (606)
14 3vq2_A TLR4, TOLL-like recepto 100.0 4.4E-27 1.5E-31 284.2 31.9 348 377-740 32-483 (606)
15 2z63_A TOLL-like receptor 4, v 100.0 2E-27 6.7E-32 285.1 26.3 384 354-746 30-509 (570)
16 2id5_A Lingo-1, leucine rich r 100.0 7.5E-27 2.6E-31 273.3 28.9 312 380-721 14-332 (477)
17 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-26 4.5E-31 274.4 27.5 337 377-726 21-460 (520)
18 4fmz_A Internalin; leucine ric 99.9 2E-26 6.8E-31 257.8 27.3 302 373-719 40-343 (347)
19 3v47_A TOLL-like receptor 5B a 99.9 8.3E-27 2.8E-31 271.3 24.8 318 377-726 30-387 (455)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.7E-26 1.6E-30 272.0 29.8 332 377-747 52-503 (562)
21 1ziw_A TOLL-like receptor 3; i 99.9 2.7E-25 9.1E-30 272.3 37.1 367 353-720 26-465 (680)
22 2z81_A CD282 antigen, TOLL-lik 99.9 7.9E-27 2.7E-31 278.4 22.8 341 353-726 27-489 (549)
23 3v47_A TOLL-like receptor 5B a 99.9 1.7E-26 5.9E-31 268.6 24.6 353 382-766 15-406 (455)
24 2z81_A CD282 antigen, TOLL-lik 99.9 9.9E-27 3.4E-31 277.6 23.0 175 377-559 26-210 (549)
25 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-26 3.8E-31 275.1 23.0 151 380-543 3-162 (520)
26 3j0a_A TOLL-like receptor 5; m 99.9 6.4E-26 2.2E-30 283.4 30.2 328 375-737 22-408 (844)
27 4fmz_A Internalin; leucine ric 99.9 1.2E-25 4E-30 251.5 29.3 283 398-726 44-327 (347)
28 3j0a_A TOLL-like receptor 5; m 99.9 3.2E-26 1.1E-30 286.2 26.7 386 353-741 25-537 (844)
29 1ziw_A TOLL-like receptor 3; i 99.9 3.1E-24 1.1E-28 262.8 38.9 192 571-765 383-594 (680)
30 1o6v_A Internalin A; bacterial 99.9 5.2E-25 1.8E-29 256.5 29.9 273 399-719 69-341 (466)
31 2z63_A TOLL-like receptor 4, v 99.9 2E-25 6.8E-30 267.6 26.3 309 377-720 28-407 (570)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.3E-25 1.8E-29 262.9 29.3 352 376-766 30-508 (562)
33 3o6n_A APL1; leucine-rich repe 99.9 4.6E-25 1.6E-29 250.8 27.1 284 398-725 45-333 (390)
34 1o6v_A Internalin A; bacterial 99.9 6.4E-25 2.2E-29 255.7 28.9 302 372-721 63-365 (466)
35 3oja_B Anopheles plasmodium-re 99.9 5.8E-25 2E-29 264.0 27.4 280 398-720 51-335 (597)
36 1jl5_A Outer protein YOPM; leu 99.9 2.6E-24 9.1E-29 248.2 31.2 289 377-733 91-380 (454)
37 3bz5_A Internalin-J, INLJ; leu 99.9 3.7E-24 1.3E-28 247.2 32.1 308 372-725 37-354 (457)
38 2id5_A Lingo-1, leucine rich r 99.9 9.4E-25 3.2E-29 255.4 26.6 309 400-747 13-326 (477)
39 3o6n_A APL1; leucine-rich repe 99.9 3E-24 1E-28 244.2 27.5 300 375-720 43-350 (390)
40 1jl5_A Outer protein YOPM; leu 99.9 1.6E-23 5.6E-28 241.6 33.4 296 400-741 73-368 (454)
41 1xku_A Decorin; proteoglycan, 99.9 6.5E-24 2.2E-28 235.4 27.8 283 399-720 32-330 (330)
42 3oja_B Anopheles plasmodium-re 99.9 5E-24 1.7E-28 255.9 27.3 300 375-720 49-356 (597)
43 3bz5_A Internalin-J, INLJ; leu 99.9 2.4E-23 8.2E-28 240.4 31.1 298 372-719 59-365 (457)
44 2ft3_A Biglycan; proteoglycan, 99.9 1.5E-23 5.1E-28 232.7 25.9 282 400-720 35-331 (332)
45 1xku_A Decorin; proteoglycan, 99.9 7.1E-23 2.4E-27 227.1 30.0 294 377-697 31-330 (330)
46 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-22 4.5E-27 246.5 31.6 361 377-740 52-552 (635)
47 1ogq_A PGIP-2, polygalacturona 99.9 1.6E-24 5.4E-29 238.0 12.6 249 421-726 51-308 (313)
48 2ft3_A Biglycan; proteoglycan, 99.9 4.3E-23 1.5E-27 229.0 23.8 262 420-721 33-306 (332)
49 4fcg_A Uncharacterized protein 99.9 2E-23 7E-28 230.5 18.8 220 399-627 82-312 (328)
50 4g8a_A TOLL-like receptor 4; l 99.9 4.3E-22 1.5E-26 241.9 30.0 365 353-740 53-577 (635)
51 4fcg_A Uncharacterized protein 99.9 9.7E-23 3.3E-27 225.1 21.0 219 467-718 82-310 (328)
52 1ogq_A PGIP-2, polygalacturona 99.9 6.2E-23 2.1E-27 225.2 18.3 248 466-745 50-306 (313)
53 2z80_A TOLL-like receptor 2, v 99.9 4.9E-23 1.7E-27 230.6 15.5 270 424-721 35-313 (353)
54 3g06_A SSPH2 (leucine-rich rep 99.9 6.8E-21 2.3E-25 226.3 31.1 255 378-720 41-295 (622)
55 3g06_A SSPH2 (leucine-rich rep 99.9 6.3E-21 2.2E-25 226.5 29.8 246 377-708 61-307 (622)
56 2z66_A Variable lymphocyte rec 99.9 8.9E-22 3E-26 215.7 18.2 245 402-699 11-261 (306)
57 2z80_A TOLL-like receptor 2, v 99.9 9.4E-22 3.2E-26 220.2 15.5 272 402-702 35-317 (353)
58 3zyj_A Leucine-rich repeat-con 99.9 1.5E-20 5.3E-25 216.9 25.4 241 379-627 45-290 (440)
59 3zyi_A Leucine-rich repeat-con 99.9 1.5E-20 5E-25 217.9 25.1 241 379-627 56-301 (452)
60 2z66_A Variable lymphocyte rec 99.9 8.8E-21 3E-25 207.8 20.3 242 380-629 10-261 (306)
61 3zyj_A Leucine-rich repeat-con 99.9 4.3E-20 1.5E-24 213.2 26.3 244 421-720 44-290 (440)
62 3zyi_A Leucine-rich repeat-con 99.9 4.1E-20 1.4E-24 214.1 25.7 194 421-626 55-252 (452)
63 3o53_A Protein LRIM1, AGAP0063 99.9 4E-22 1.4E-26 219.4 8.1 261 422-724 12-277 (317)
64 1ozn_A Reticulon 4 receptor; N 99.8 4.3E-20 1.5E-24 200.0 21.0 205 443-699 32-238 (285)
65 1z7x_W Ribonuclease inhibitor; 99.8 4.6E-23 1.6E-27 240.1 -2.9 329 372-720 23-409 (461)
66 1ozn_A Reticulon 4 receptor; N 99.8 9.4E-20 3.2E-24 197.3 23.4 219 401-628 14-237 (285)
67 3oja_A Leucine-rich immune mol 99.8 1.4E-20 4.9E-25 219.2 12.0 233 443-717 34-270 (487)
68 1wwl_A Monocyte differentiatio 99.8 1.5E-21 5.1E-26 214.3 2.2 176 520-720 119-307 (312)
69 3o53_A Protein LRIM1, AGAP0063 99.8 5.8E-21 2E-25 210.1 5.6 262 444-747 11-279 (317)
70 1z7x_W Ribonuclease inhibitor; 99.8 1.9E-22 6.7E-27 234.8 -8.0 342 377-740 3-408 (461)
71 1wwl_A Monocyte differentiatio 99.8 8.9E-21 3E-25 208.1 4.6 200 465-700 94-310 (312)
72 3oja_A Leucine-rich immune mol 99.8 4.8E-19 1.7E-23 206.3 15.1 217 464-722 32-250 (487)
73 2z62_A TOLL-like receptor 4, v 99.8 5.6E-18 1.9E-22 182.4 19.8 215 403-628 12-236 (276)
74 2z62_A TOLL-like receptor 4, v 99.8 1E-17 3.6E-22 180.3 19.8 220 424-699 11-237 (276)
75 2o6q_A Variable lymphocyte rec 99.8 3.9E-17 1.3E-21 175.0 23.6 172 399-579 17-191 (270)
76 1p9a_G Platelet glycoprotein I 99.8 3.5E-17 1.2E-21 177.0 22.4 128 440-579 7-134 (290)
77 3ogk_B Coronatine-insensitive 99.8 7.3E-20 2.5E-24 220.2 0.7 319 374-720 161-524 (592)
78 1p9a_G Platelet glycoprotein I 99.8 2.8E-17 9.4E-22 177.8 20.5 194 399-627 11-206 (290)
79 2o6q_A Variable lymphocyte rec 99.7 8.6E-17 3E-21 172.3 22.9 199 420-628 16-217 (270)
80 2ast_B S-phase kinase-associat 99.7 1.1E-18 3.7E-23 193.9 5.2 195 422-626 49-257 (336)
81 2xwt_C Thyrotropin receptor; s 99.7 2.7E-17 9.1E-22 172.9 14.7 203 410-627 23-237 (239)
82 3ogk_B Coronatine-insensitive 99.7 3E-19 1E-23 214.8 -2.2 207 519-741 290-524 (592)
83 1h6u_A Internalin H; cell adhe 99.7 8.1E-17 2.8E-21 175.9 17.2 187 399-627 42-228 (308)
84 3rfs_A Internalin B, repeat mo 99.7 1.1E-16 3.7E-21 171.7 17.1 200 399-614 42-244 (272)
85 1h6u_A Internalin H; cell adhe 99.7 1.3E-16 4.5E-21 174.2 17.8 167 373-555 37-205 (308)
86 2xwt_C Thyrotropin receptor; s 99.7 9E-17 3.1E-21 168.9 15.8 58 661-721 179-238 (239)
87 3rfs_A Internalin B, repeat mo 99.7 3.2E-17 1.1E-21 175.8 12.5 208 404-627 25-233 (272)
88 2ast_B S-phase kinase-associat 99.7 2.7E-18 9.4E-23 190.7 3.9 198 421-626 71-282 (336)
89 2qen_A Walker-type ATPase; unk 99.7 2.8E-16 9.7E-21 175.4 20.2 295 2-318 4-349 (350)
90 2p1m_B Transport inhibitor res 99.7 2.4E-19 8.1E-24 215.9 -6.5 351 373-742 101-518 (594)
91 4ay9_X Follicle-stimulating ho 99.7 2.6E-16 8.9E-21 175.4 18.6 215 401-627 12-234 (350)
92 2ca6_A RAN GTPase-activating p 99.7 2.4E-18 8.1E-23 195.0 1.2 262 421-721 10-315 (386)
93 4ay9_X Follicle-stimulating ho 99.7 3.4E-16 1.2E-20 174.4 18.5 172 423-626 12-187 (350)
94 4glp_A Monocyte differentiatio 99.7 9.5E-17 3.2E-21 175.8 13.4 201 419-629 90-307 (310)
95 4glp_A Monocyte differentiatio 99.7 1.5E-16 5.1E-21 174.3 14.6 201 490-720 91-305 (310)
96 2p1m_B Transport inhibitor res 99.7 8.2E-19 2.8E-23 211.1 -6.9 385 371-767 60-518 (594)
97 2ca6_A RAN GTPase-activating p 99.7 1.7E-18 5.9E-23 196.2 -4.4 250 409-702 20-319 (386)
98 3m19_A Variable lymphocyte rec 99.7 2.5E-15 8.6E-20 159.0 19.8 175 399-606 15-192 (251)
99 2fna_A Conserved hypothetical 99.6 1.3E-15 4.3E-20 170.6 17.4 294 2-316 5-355 (357)
100 3m19_A Variable lymphocyte rec 99.6 4.9E-15 1.7E-19 156.7 20.4 171 377-555 14-189 (251)
101 3goz_A Leucine-rich repeat-con 99.6 7.5E-17 2.6E-21 180.8 5.0 256 424-720 2-295 (362)
102 3goz_A Leucine-rich repeat-con 99.6 3.1E-17 1.1E-21 183.9 1.2 203 402-608 2-240 (362)
103 1w5s_A Origin recognition comp 99.6 4.1E-15 1.4E-19 170.0 18.0 287 7-303 19-371 (412)
104 1h6t_A Internalin B; cell adhe 99.6 9.4E-15 3.2E-19 158.0 17.5 169 519-720 43-211 (291)
105 3cvr_A Invasion plasmid antige 99.6 1.2E-14 3.9E-19 170.6 19.6 193 467-708 60-253 (571)
106 3cvr_A Invasion plasmid antige 99.6 4.2E-15 1.4E-19 174.3 14.9 177 378-606 60-243 (571)
107 1h6t_A Internalin B; cell adhe 99.6 1.1E-14 3.7E-19 157.5 13.4 169 419-606 45-213 (291)
108 1m9s_A Internalin B; cell inva 99.6 4.5E-14 1.5E-18 167.5 18.2 124 487-626 40-163 (605)
109 1m9s_A Internalin B; cell inva 99.5 9.7E-15 3.3E-19 173.3 11.7 172 418-608 41-212 (605)
110 2o6s_A Variable lymphocyte rec 99.5 4.3E-14 1.5E-18 144.8 14.9 145 402-555 11-158 (208)
111 2qby_B CDC6 homolog 3, cell di 99.5 5.9E-13 2E-17 150.4 25.7 277 9-303 19-339 (384)
112 4ezg_A Putative uncharacterize 99.5 3.3E-14 1.1E-18 144.2 11.6 126 419-555 43-169 (197)
113 1xeu_A Internalin C; cellular 99.5 3.2E-14 1.1E-18 151.3 11.6 168 519-720 16-183 (263)
114 2v1u_A Cell division control p 99.5 5.7E-13 2E-17 150.7 22.3 283 7-303 16-351 (387)
115 2o6s_A Variable lymphocyte rec 99.5 1.5E-13 5E-18 140.8 15.8 176 381-570 11-190 (208)
116 4ezg_A Putative uncharacterize 99.5 8.4E-14 2.9E-18 141.2 12.3 148 399-557 45-193 (197)
117 2v9t_B SLIT homolog 2 protein 99.5 3.2E-13 1.1E-17 139.4 16.8 151 525-699 14-165 (220)
118 3e6j_A Variable lymphocyte rec 99.5 3.6E-13 1.2E-17 140.0 16.7 150 523-720 20-170 (229)
119 2qby_A CDC6 homolog 1, cell di 99.5 5.8E-13 2E-17 150.6 19.6 286 7-303 17-348 (386)
120 1dce_A Protein (RAB geranylger 99.5 4.9E-16 1.7E-20 183.3 -6.2 192 418-622 347-566 (567)
121 1dce_A Protein (RAB geranylger 99.5 2.2E-15 7.6E-20 177.7 -2.3 212 463-716 346-567 (567)
122 3e6j_A Variable lymphocyte rec 99.5 7.6E-13 2.6E-17 137.6 17.0 145 425-580 24-170 (229)
123 2v9t_B SLIT homolog 2 protein 99.5 7.3E-13 2.5E-17 136.7 16.4 74 425-500 16-90 (220)
124 2xot_A Amphoterin-induced prot 99.5 4.6E-13 1.6E-17 149.7 15.6 170 526-720 22-200 (361)
125 2v70_A SLIT-2, SLIT homolog 2 99.5 6.9E-13 2.4E-17 136.9 15.7 147 402-581 15-165 (220)
126 2xot_A Amphoterin-induced prot 99.5 2.8E-13 9.7E-18 151.4 13.8 177 401-606 21-202 (361)
127 2v70_A SLIT-2, SLIT homolog 2 99.4 7.9E-13 2.7E-17 136.4 15.5 151 424-607 15-167 (220)
128 1xeu_A Internalin C; cellular 99.4 9.1E-14 3.1E-18 147.8 8.5 168 419-606 18-185 (263)
129 1fnn_A CDC6P, cell division co 99.4 9.7E-12 3.3E-16 140.7 22.0 285 8-303 15-351 (389)
130 4b8c_D Glucose-repressible alc 99.3 3E-13 1E-17 164.7 3.0 163 425-603 206-369 (727)
131 2ell_A Acidic leucine-rich nuc 99.3 3.1E-12 1.1E-16 125.9 9.3 108 463-580 46-158 (168)
132 4b8c_D Glucose-repressible alc 99.3 7.9E-13 2.7E-17 161.0 5.2 150 461-626 219-369 (727)
133 2je0_A Acidic leucine-rich nuc 99.3 5.2E-12 1.8E-16 121.5 9.1 126 420-553 17-148 (149)
134 1njg_A DNA polymerase III subu 99.3 5.2E-11 1.8E-15 125.0 16.6 200 6-219 19-231 (250)
135 2ell_A Acidic leucine-rich nuc 99.3 1E-11 3.6E-16 122.1 10.4 129 490-628 24-159 (168)
136 2je0_A Acidic leucine-rich nuc 99.2 1E-11 3.6E-16 119.4 7.8 104 520-624 40-148 (149)
137 1w8a_A SLIT protein; signaling 99.2 7.7E-11 2.6E-15 118.6 13.6 99 401-500 11-112 (192)
138 1w8a_A SLIT protein; signaling 99.2 7.5E-11 2.6E-15 118.7 13.1 126 423-582 11-139 (192)
139 1a9n_A U2A', U2A'; complex (nu 99.2 2.9E-11 9.9E-16 119.9 9.8 129 418-555 17-150 (176)
140 2wfh_A SLIT homolog 2 protein 99.2 1.3E-10 4.5E-15 116.9 14.1 124 493-627 13-137 (193)
141 2chg_A Replication factor C sm 99.2 4.2E-10 1.4E-14 116.1 18.0 187 6-216 13-204 (226)
142 3sb4_A Hypothetical leucine ri 99.2 2.1E-10 7.3E-15 126.2 16.4 240 376-623 48-328 (329)
143 2wfh_A SLIT homolog 2 protein 99.2 1.6E-10 5.6E-15 116.2 13.9 99 401-500 13-112 (193)
144 1a9n_A U2A', U2A'; complex (nu 99.1 8.1E-11 2.8E-15 116.7 9.2 102 523-627 43-151 (176)
145 2o6r_A Variable lymphocyte rec 99.1 7.4E-10 2.5E-14 109.8 15.2 81 524-606 9-89 (177)
146 2o6r_A Variable lymphocyte rec 99.1 9.2E-10 3.2E-14 109.1 13.8 57 444-500 29-86 (177)
147 3sb4_A Hypothetical leucine ri 99.1 4E-10 1.4E-14 124.1 11.4 124 568-715 201-327 (329)
148 1sxj_B Activator 1 37 kDa subu 99.1 1.2E-09 4E-14 120.0 14.8 186 7-216 18-210 (323)
149 4fs7_A Uncharacterized protein 99.0 2.5E-08 8.6E-13 112.6 22.5 324 367-769 61-391 (394)
150 1ds9_A Outer arm dynein; leuci 99.0 9.8E-12 3.3E-16 126.0 -5.4 118 431-560 36-155 (198)
151 1ds9_A Outer arm dynein; leuci 99.0 3.8E-12 1.3E-16 129.0 -8.9 55 659-715 113-180 (198)
152 1iqp_A RFCS; clamp loader, ext 98.9 1E-08 3.4E-13 112.7 16.6 188 7-218 22-214 (327)
153 1hqc_A RUVB; extended AAA-ATPa 98.9 3.8E-08 1.3E-12 107.9 19.3 262 6-315 8-310 (324)
154 3g39_A Variable lymphocyte rec 98.9 8.4E-09 2.9E-13 101.3 12.0 102 524-627 11-113 (170)
155 2r9u_A Variable lymphocyte rec 98.9 9.6E-09 3.3E-13 101.2 12.1 100 525-627 15-116 (174)
156 4fdw_A Leucine rich hypothetic 98.9 1.3E-07 4.6E-12 106.2 22.5 60 656-718 318-379 (401)
157 4fdw_A Leucine rich hypothetic 98.8 1.9E-07 6.4E-12 105.0 22.2 238 366-625 125-379 (401)
158 3g39_A Variable lymphocyte rec 98.8 1.9E-08 6.5E-13 98.7 12.2 101 400-501 11-113 (170)
159 2r9u_A Variable lymphocyte rec 98.8 2.6E-08 8.8E-13 98.1 12.2 98 401-500 15-115 (174)
160 4fs7_A Uncharacterized protein 98.8 3E-07 1E-11 103.7 20.8 302 409-769 58-369 (394)
161 1jr3_A DNA polymerase III subu 98.7 3E-08 1E-12 111.1 10.9 196 7-217 13-222 (373)
162 2chq_A Replication factor C sm 98.7 1E-07 3.6E-12 104.1 14.7 180 7-216 14-204 (319)
163 3te6_A Regulatory protein SIR3 98.7 1.4E-07 4.8E-12 101.0 14.6 168 11-185 21-212 (318)
164 3pfi_A Holliday junction ATP-d 98.7 5.2E-07 1.8E-11 99.4 18.6 248 8-304 27-314 (338)
165 1sxj_D Activator 1 41 kDa subu 98.6 1.2E-06 4E-11 97.2 20.9 196 7-216 34-235 (353)
166 1sxj_A Activator 1 95 kDa subu 98.6 3.1E-07 1.1E-11 107.0 16.8 191 7-215 36-252 (516)
167 3h4m_A Proteasome-activating n 98.6 2E-07 6.9E-12 100.0 13.1 183 6-215 13-230 (285)
168 3bos_A Putative DNA replicatio 98.6 1.7E-07 5.7E-12 97.8 11.3 174 8-216 26-217 (242)
169 1jbk_A CLPB protein; beta barr 98.6 1.5E-07 5E-12 94.3 9.8 51 7-59 19-69 (195)
170 2ifg_A High affinity nerve gro 98.5 2.1E-07 7.3E-12 103.0 11.2 102 526-628 12-115 (347)
171 3eie_A Vacuolar protein sortin 98.5 1.1E-06 3.9E-11 95.7 16.0 183 7-216 15-228 (322)
172 3un9_A NLR family member X1; l 98.5 1.3E-08 4.5E-13 113.3 0.2 85 544-628 154-251 (372)
173 3uk6_A RUVB-like 2; hexameric 98.5 1.1E-06 3.9E-11 97.9 16.0 203 9-216 43-303 (368)
174 3d8b_A Fidgetin-like protein 1 98.5 1.5E-06 5E-11 96.2 15.8 186 6-217 80-296 (357)
175 3un9_A NLR family member X1; l 98.5 1.2E-08 4.1E-13 113.6 -1.1 160 443-607 72-253 (372)
176 2qz4_A Paraplegin; AAA+, SPG7, 98.5 1.8E-06 6.2E-11 91.2 15.8 183 8-215 4-221 (262)
177 2z4s_A Chromosomal replication 98.5 6.2E-07 2.1E-11 101.9 12.8 183 9-214 104-304 (440)
178 1sxj_E Activator 1 40 kDa subu 98.5 1.3E-06 4.3E-11 97.0 15.1 200 6-216 10-237 (354)
179 1d2n_A N-ethylmaleimide-sensit 98.5 2.7E-06 9.2E-11 90.4 16.8 170 9-208 32-229 (272)
180 2ifg_A High affinity nerve gro 98.4 7.1E-07 2.4E-11 98.7 10.5 85 521-607 30-117 (347)
181 3pvs_A Replication-associated 98.4 2.2E-06 7.4E-11 97.2 14.5 179 7-216 23-215 (447)
182 2qp9_X Vacuolar protein sortin 98.4 3.2E-06 1.1E-10 93.3 15.5 183 7-216 48-261 (355)
183 2ra8_A Uncharacterized protein 98.4 1.4E-07 4.9E-12 104.0 4.4 61 659-720 250-318 (362)
184 1l8q_A Chromosomal replication 98.4 7.6E-06 2.6E-10 89.4 17.8 179 7-211 8-203 (324)
185 3cf0_A Transitional endoplasmi 98.4 6.8E-06 2.3E-10 88.5 17.2 175 8-210 13-222 (301)
186 1xwi_A SKD1 protein; VPS4B, AA 98.3 1.8E-05 6.1E-10 86.0 19.9 184 7-216 9-223 (322)
187 3u61_B DNA polymerase accessor 98.3 5E-06 1.7E-10 90.8 15.5 179 7-213 23-213 (324)
188 3vfd_A Spastin; ATPase, microt 98.3 3.9E-06 1.3E-10 94.2 14.6 182 8-216 113-326 (389)
189 2p65_A Hypothetical protein PF 98.3 4.2E-06 1.4E-10 83.0 13.2 51 7-59 19-69 (187)
190 2zan_A Vacuolar protein sortin 98.3 9.5E-06 3.2E-10 92.3 16.8 183 7-215 131-344 (444)
191 2ra8_A Uncharacterized protein 98.3 2.4E-07 8.4E-12 102.1 3.0 61 437-500 133-203 (362)
192 4gt6_A Cell surface protein; l 98.3 4.7E-05 1.6E-09 85.5 21.6 100 655-768 259-359 (394)
193 3b9p_A CG5977-PA, isoform A; A 98.2 1.2E-05 4.2E-10 86.5 15.3 184 6-216 17-233 (297)
194 4gt6_A Cell surface protein; l 98.2 0.00024 8.4E-09 79.6 25.3 127 588-750 260-387 (394)
195 3syl_A Protein CBBX; photosynt 98.2 7.1E-06 2.4E-10 89.0 11.5 153 11-186 32-219 (309)
196 1sxj_C Activator 1 40 kDa subu 98.1 7.2E-05 2.4E-09 82.1 19.5 181 9-213 24-209 (340)
197 1a5t_A Delta prime, HOLB; zinc 98.1 3.1E-05 1.1E-09 84.6 16.1 183 16-217 8-206 (334)
198 4h09_A Hypothetical leucine ri 98.1 0.00043 1.5E-08 77.2 25.6 125 565-717 213-341 (379)
199 4b4t_J 26S protease regulatory 98.1 3.6E-05 1.2E-09 84.3 15.8 173 9-209 147-354 (405)
200 4h09_A Hypothetical leucine ri 98.1 0.00027 9.1E-09 78.9 23.2 295 419-767 45-357 (379)
201 3n70_A Transport activator; si 98.1 4.2E-06 1.4E-10 79.4 6.8 48 10-57 1-48 (145)
202 1in4_A RUVB, holliday junction 98.0 0.00018 6.3E-09 78.5 19.9 254 8-307 23-315 (334)
203 4b4t_M 26S protease regulatory 98.0 3E-05 1E-09 86.4 13.2 175 6-209 177-387 (434)
204 3pxg_A Negative regulator of g 98.0 4.4E-05 1.5E-09 87.4 14.7 149 8-184 178-338 (468)
205 3hu3_A Transitional endoplasmi 98.0 1.1E-05 3.7E-10 92.4 9.4 179 10-215 204-414 (489)
206 4b4t_H 26S protease regulatory 98.0 0.00013 4.3E-09 81.1 17.2 172 9-209 208-415 (467)
207 4b4t_L 26S protease subunit RP 98.0 0.00013 4.4E-09 81.4 17.5 173 9-209 180-387 (437)
208 4b4t_I 26S protease regulatory 97.9 0.0002 6.8E-09 78.7 16.5 173 8-209 180-388 (437)
209 4b4t_K 26S protease regulatory 97.9 0.00012 4.2E-09 81.4 14.4 172 9-209 171-379 (428)
210 3ec2_A DNA replication protein 97.9 4.8E-05 1.6E-09 75.0 9.9 50 9-58 9-63 (180)
211 2r62_A Cell division protease 97.8 9.1E-06 3.1E-10 86.1 4.9 155 6-184 7-196 (268)
212 1r6b_X CLPA protein; AAA+, N-t 97.8 8.4E-05 2.9E-09 91.1 14.1 156 8-184 184-362 (758)
213 1lv7_A FTSH; alpha/beta domain 97.8 0.00016 5.6E-09 75.8 14.4 181 6-213 8-222 (257)
214 2w58_A DNAI, primosome compone 97.8 4.7E-05 1.6E-09 76.6 9.7 61 8-69 23-89 (202)
215 2ce7_A Cell division protein F 97.8 0.00015 5.3E-09 82.1 14.8 175 8-209 14-221 (476)
216 1qvr_A CLPB protein; coiled co 97.8 4.3E-05 1.5E-09 94.7 11.0 154 7-183 167-344 (854)
217 1ofh_A ATP-dependent HSL prote 97.8 0.00011 3.8E-09 79.4 11.8 49 10-58 15-75 (310)
218 2gno_A DNA polymerase III, gam 97.7 0.00013 4.4E-09 78.2 11.1 145 14-184 1-152 (305)
219 3pxi_A Negative regulator of g 97.7 0.00019 6.6E-09 87.7 14.0 149 8-184 178-338 (758)
220 2bjv_A PSP operon transcriptio 97.7 7.9E-05 2.7E-09 78.6 9.2 50 9-58 5-54 (265)
221 4fcw_A Chaperone protein CLPB; 97.7 0.00018 6.3E-09 77.7 12.1 51 10-60 17-74 (311)
222 2c9o_A RUVB-like 1; hexameric 97.7 0.00022 7.4E-09 81.5 13.0 50 9-58 36-88 (456)
223 3e4g_A ATP synthase subunit S, 97.6 2.1E-05 7E-10 76.0 3.1 88 418-505 59-154 (176)
224 1ixz_A ATP-dependent metallopr 97.6 0.00053 1.8E-08 71.6 13.3 154 6-184 12-199 (254)
225 1io0_A Tropomodulin; LRR prote 97.6 1E-05 3.4E-10 80.3 -0.1 61 660-720 92-162 (185)
226 3co5_A Putative two-component 97.6 1.5E-05 5.1E-10 75.3 1.1 48 10-57 4-51 (143)
227 1ojl_A Transcriptional regulat 97.6 0.0003 1E-08 75.5 11.5 48 10-57 2-49 (304)
228 1io0_A Tropomodulin; LRR prote 97.5 2.2E-05 7.4E-10 77.8 2.1 59 569-627 93-162 (185)
229 1iy2_A ATP-dependent metallopr 97.5 0.00077 2.6E-08 71.5 14.0 175 7-209 37-245 (278)
230 3t15_A Ribulose bisphosphate c 97.5 0.00036 1.2E-08 74.6 10.4 28 32-59 35-62 (293)
231 2dhr_A FTSH; AAA+ protein, hex 97.4 0.0011 3.8E-08 75.6 14.6 172 7-209 28-236 (499)
232 3e4g_A ATP synthase subunit S, 97.4 0.00017 5.8E-09 69.6 6.3 38 467-504 62-99 (176)
233 3cf2_A TER ATPase, transitiona 97.4 0.00026 9E-09 84.9 9.1 173 10-209 204-407 (806)
234 2kjq_A DNAA-related protein; s 97.4 0.00024 8.4E-09 67.2 6.7 37 32-69 35-71 (149)
235 3pxi_A Negative regulator of g 97.4 0.00045 1.5E-08 84.5 10.7 150 10-184 491-675 (758)
236 2x8a_A Nuclear valosin-contain 97.2 0.0069 2.3E-07 63.7 16.9 151 9-184 9-191 (274)
237 3m6a_A ATP-dependent protease 97.2 0.00069 2.4E-08 78.9 8.9 51 11-61 82-136 (543)
238 2cvh_A DNA repair and recombin 97.0 0.0013 4.5E-08 66.8 8.1 45 21-69 8-52 (220)
239 1ypw_A Transitional endoplasmi 97.0 0.0036 1.2E-07 76.4 13.1 151 9-184 203-385 (806)
240 3rw6_A Nuclear RNA export fact 97.0 0.00036 1.2E-08 72.7 3.5 86 440-528 167-257 (267)
241 1um8_A ATP-dependent CLP prote 96.9 0.0022 7.5E-08 71.2 10.1 49 10-58 21-97 (376)
242 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0032 1.1E-07 76.9 11.9 48 10-57 458-512 (758)
243 3rw6_A Nuclear RNA export fact 96.9 0.00063 2.2E-08 70.8 4.7 38 520-557 168-208 (267)
244 1g5t_A COB(I)alamin adenosyltr 96.5 0.0031 1.1E-07 61.7 5.8 116 34-154 29-163 (196)
245 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0025 8.6E-08 67.4 5.2 71 33-127 123-193 (331)
246 2qgz_A Helicase loader, putati 96.4 0.0086 3E-07 64.1 9.5 60 9-69 123-188 (308)
247 1qvr_A CLPB protein; coiled co 96.2 0.0087 3E-07 73.9 9.7 49 11-59 559-614 (854)
248 3lw7_A Adenylate kinase relate 96.2 0.031 1.1E-06 54.0 11.9 22 34-56 2-23 (179)
249 3cf2_A TER ATPase, transitiona 96.2 0.0038 1.3E-07 74.9 6.0 151 9-184 476-661 (806)
250 4a74_A DNA repair and recombin 96.1 0.0067 2.3E-07 61.9 6.5 49 21-69 13-66 (231)
251 3hr8_A Protein RECA; alpha and 96.1 0.011 3.6E-07 64.3 8.1 53 16-69 43-96 (356)
252 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0097 3.3E-07 60.8 7.6 36 33-69 23-58 (235)
253 1u0j_A DNA replication protein 96.0 0.028 9.5E-07 57.9 10.6 36 22-57 93-128 (267)
254 3sr0_A Adenylate kinase; phosp 96.0 0.029 9.9E-07 55.9 10.4 87 35-134 2-93 (206)
255 1jr3_D DNA polymerase III, del 95.9 0.066 2.3E-06 58.3 13.6 156 32-215 17-184 (343)
256 1v5w_A DMC1, meiotic recombina 95.7 0.032 1.1E-06 60.7 10.2 50 20-69 109-163 (343)
257 2ehv_A Hypothetical protein PH 95.7 0.013 4.3E-07 60.7 6.6 24 32-55 29-52 (251)
258 3hws_A ATP-dependent CLP prote 95.7 0.0078 2.7E-07 66.3 5.2 48 11-58 16-76 (363)
259 3c8u_A Fructokinase; YP_612366 95.7 0.01 3.6E-07 59.5 5.6 41 18-58 7-47 (208)
260 1n0w_A DNA repair protein RAD5 95.6 0.018 6.3E-07 59.1 7.6 50 20-69 11-65 (243)
261 3jvv_A Twitching mobility prot 95.6 0.02 7E-07 62.3 8.2 111 34-157 124-234 (356)
262 3umf_A Adenylate kinase; rossm 95.6 0.054 1.9E-06 54.3 10.5 27 31-57 27-53 (217)
263 2r44_A Uncharacterized protein 95.5 0.0077 2.6E-07 65.4 4.0 48 9-60 26-73 (331)
264 1rz3_A Hypothetical protein rb 95.5 0.019 6.7E-07 57.1 6.7 44 15-58 3-47 (201)
265 2b8t_A Thymidine kinase; deoxy 95.4 0.028 9.5E-07 56.6 7.7 112 32-154 11-126 (223)
266 2zr9_A Protein RECA, recombina 95.4 0.021 7.2E-07 62.1 7.1 54 15-69 42-96 (349)
267 1xp8_A RECA protein, recombina 95.4 0.036 1.2E-06 60.5 8.9 53 16-69 56-109 (366)
268 1ypw_A Transitional endoplasmi 95.4 0.0013 4.4E-08 80.3 -2.8 151 9-184 476-661 (806)
269 1qhx_A CPT, protein (chloramph 95.3 0.0076 2.6E-07 58.7 3.2 25 34-58 4-28 (178)
270 1u94_A RECA protein, recombina 95.3 0.018 6.1E-07 62.7 6.2 53 16-69 45-98 (356)
271 2z43_A DNA repair and recombin 95.1 0.033 1.1E-06 60.1 7.7 50 20-69 94-148 (324)
272 2eyu_A Twitching motility prot 95.1 0.035 1.2E-06 57.6 7.6 109 32-155 24-134 (261)
273 3kb2_A SPBC2 prophage-derived 95.1 0.011 3.7E-07 57.2 3.4 25 34-58 2-26 (173)
274 3io5_A Recombination and repai 95.1 0.04 1.4E-06 57.9 7.7 49 20-69 12-65 (333)
275 1odf_A YGR205W, hypothetical 3 95.1 0.023 7.8E-07 60.1 6.0 31 29-59 27-57 (290)
276 1sky_E F1-ATPase, F1-ATP synth 95.1 0.054 1.8E-06 60.4 9.2 35 34-68 152-186 (473)
277 3ice_A Transcription terminati 95.0 0.035 1.2E-06 59.9 7.3 31 32-62 173-203 (422)
278 3vaa_A Shikimate kinase, SK; s 94.9 0.013 4.6E-07 58.2 3.6 25 33-57 25-49 (199)
279 1vma_A Cell division protein F 94.9 0.095 3.2E-06 55.7 10.2 51 18-69 83-139 (306)
280 2i1q_A DNA repair and recombin 94.9 0.043 1.5E-06 59.2 7.6 38 20-57 85-122 (322)
281 3trf_A Shikimate kinase, SK; a 94.8 0.014 4.9E-07 57.1 3.4 24 34-57 6-29 (185)
282 3dm5_A SRP54, signal recogniti 94.8 0.074 2.5E-06 59.2 9.4 37 32-69 99-135 (443)
283 3bh0_A DNAB-like replicative h 94.8 0.14 4.8E-06 54.8 11.4 66 17-90 53-118 (315)
284 2ga8_A Hypothetical 39.9 kDa p 94.8 0.017 5.9E-07 62.0 4.1 49 13-61 2-52 (359)
285 1tue_A Replication protein E1; 94.7 0.023 7.8E-07 55.7 4.5 39 19-58 45-83 (212)
286 2r8r_A Sensor protein; KDPD, P 94.7 0.032 1.1E-06 55.8 5.5 26 35-60 8-33 (228)
287 1ex7_A Guanylate kinase; subst 94.7 0.013 4.3E-07 57.4 2.6 29 34-62 2-30 (186)
288 1g8p_A Magnesium-chelatase 38 94.7 0.015 5.1E-07 63.6 3.5 50 7-58 21-70 (350)
289 3uie_A Adenylyl-sulfate kinase 94.6 0.032 1.1E-06 55.5 5.4 27 32-58 24-50 (200)
290 3nbx_X ATPase RAVA; AAA+ ATPas 94.5 0.016 5.4E-07 66.1 3.2 45 10-58 22-66 (500)
291 1nks_A Adenylate kinase; therm 94.5 0.034 1.2E-06 54.7 5.2 26 34-59 2-27 (194)
292 1zuh_A Shikimate kinase; alpha 94.4 0.021 7.1E-07 55.0 3.5 27 32-58 6-32 (168)
293 1ly1_A Polynucleotide kinase; 94.4 0.022 7.6E-07 55.4 3.6 22 34-55 3-24 (181)
294 1zp6_A Hypothetical protein AT 94.4 0.021 7.2E-07 56.2 3.4 25 32-56 8-32 (191)
295 2ze6_A Isopentenyl transferase 94.3 0.024 8.4E-07 58.7 3.8 24 34-57 2-25 (253)
296 2rhm_A Putative kinase; P-loop 94.3 0.027 9.3E-07 55.4 4.0 25 33-57 5-29 (193)
297 1kag_A SKI, shikimate kinase I 94.2 0.017 5.8E-07 55.8 2.4 24 34-57 5-28 (173)
298 3lda_A DNA repair protein RAD5 94.2 0.063 2.1E-06 59.3 7.2 49 21-69 166-219 (400)
299 3tlx_A Adenylate kinase 2; str 94.2 0.03 1E-06 57.7 4.3 41 17-57 13-53 (243)
300 2yvu_A Probable adenylyl-sulfa 94.2 0.043 1.5E-06 53.7 5.3 28 32-59 12-39 (186)
301 3iij_A Coilin-interacting nucl 94.2 0.019 6.5E-07 56.0 2.6 25 33-57 11-35 (180)
302 1kgd_A CASK, peripheral plasma 94.2 0.025 8.7E-07 55.1 3.4 26 33-58 5-30 (180)
303 2q6t_A DNAB replication FORK h 94.1 0.11 3.9E-06 58.6 9.3 66 18-90 186-251 (444)
304 1xjc_A MOBB protein homolog; s 94.1 0.041 1.4E-06 52.6 4.7 29 32-60 3-31 (169)
305 1g41_A Heat shock protein HSLU 94.1 0.04 1.4E-06 61.4 5.3 51 10-60 15-77 (444)
306 3kl4_A SRP54, signal recogniti 94.1 0.13 4.5E-06 57.1 9.4 37 32-69 96-132 (433)
307 3tau_A Guanylate kinase, GMP k 94.1 0.026 9E-07 56.5 3.4 28 32-59 7-34 (208)
308 2px0_A Flagellar biosynthesis 94.1 0.097 3.3E-06 55.4 8.0 37 32-69 104-141 (296)
309 1kht_A Adenylate kinase; phosp 94.1 0.026 9E-07 55.5 3.4 26 34-59 4-29 (192)
310 3t61_A Gluconokinase; PSI-biol 94.0 0.022 7.6E-07 56.7 2.7 25 33-57 18-42 (202)
311 3gmt_A Adenylate kinase; ssgci 94.0 0.15 5E-06 51.4 8.7 24 34-57 9-32 (230)
312 3fwy_A Light-independent proto 94.0 0.049 1.7E-06 58.2 5.5 38 31-69 46-83 (314)
313 1via_A Shikimate kinase; struc 93.9 0.026 9E-07 54.7 3.0 23 35-57 6-28 (175)
314 2ewv_A Twitching motility prot 93.9 0.091 3.1E-06 57.7 7.7 109 32-154 135-244 (372)
315 4eun_A Thermoresistant glucoki 93.9 0.03 1E-06 55.6 3.5 26 32-57 28-53 (200)
316 2jaq_A Deoxyguanosine kinase; 93.9 0.027 9.3E-07 56.0 3.2 24 35-58 2-25 (205)
317 3a00_A Guanylate kinase, GMP k 93.9 0.023 7.9E-07 55.8 2.5 28 34-61 2-29 (186)
318 1knq_A Gluconate kinase; ALFA/ 93.9 0.035 1.2E-06 53.7 3.8 26 32-57 7-32 (175)
319 4a1f_A DNAB helicase, replicat 93.9 0.18 6.2E-06 54.1 9.6 71 12-90 26-96 (338)
320 1pzn_A RAD51, DNA repair and r 93.8 0.067 2.3E-06 58.2 6.4 49 21-69 119-172 (349)
321 2r6a_A DNAB helicase, replicat 93.8 0.13 4.5E-06 58.2 9.1 38 32-69 202-239 (454)
322 3ney_A 55 kDa erythrocyte memb 93.8 0.032 1.1E-06 54.9 3.4 28 32-59 18-45 (197)
323 2pt7_A CAG-ALFA; ATPase, prote 93.8 0.055 1.9E-06 58.3 5.6 102 34-154 172-275 (330)
324 2iyv_A Shikimate kinase, SK; t 93.8 0.026 8.8E-07 55.2 2.7 24 34-57 3-26 (184)
325 1tev_A UMP-CMP kinase; ploop, 93.8 0.037 1.3E-06 54.5 3.9 24 34-57 4-27 (196)
326 2c95_A Adenylate kinase 1; tra 93.7 0.03 1E-06 55.3 3.1 25 33-57 9-33 (196)
327 1q57_A DNA primase/helicase; d 93.7 0.21 7.1E-06 57.5 10.6 53 32-90 241-293 (503)
328 1ukz_A Uridylate kinase; trans 93.7 0.04 1.4E-06 54.8 4.0 27 31-57 13-39 (203)
329 1j8m_F SRP54, signal recogniti 93.7 0.25 8.7E-06 52.1 10.4 36 33-69 98-133 (297)
330 3l0o_A Transcription terminati 93.7 0.11 3.7E-06 56.0 7.3 40 32-71 174-213 (427)
331 2bdt_A BH3686; alpha-beta prot 93.7 0.037 1.3E-06 54.4 3.6 31 34-69 3-33 (189)
332 1y63_A LMAJ004144AAA protein; 93.7 0.037 1.3E-06 54.1 3.6 25 32-56 9-33 (184)
333 2vli_A Antibiotic resistance p 93.6 0.025 8.4E-07 55.2 2.3 24 34-57 6-29 (183)
334 3cm0_A Adenylate kinase; ATP-b 93.6 0.044 1.5E-06 53.6 4.0 25 33-57 4-28 (186)
335 2plr_A DTMP kinase, probable t 93.6 0.044 1.5E-06 54.9 4.0 26 34-59 5-30 (213)
336 2pt5_A Shikimate kinase, SK; a 93.5 0.041 1.4E-06 52.8 3.6 24 35-58 2-25 (168)
337 1ye8_A Protein THEP1, hypothet 93.5 0.04 1.4E-06 53.5 3.5 24 35-58 2-25 (178)
338 3upu_A ATP-dependent DNA helic 93.5 0.094 3.2E-06 59.6 7.2 28 34-61 46-73 (459)
339 2qor_A Guanylate kinase; phosp 93.5 0.031 1.1E-06 55.7 2.8 27 32-58 11-37 (204)
340 1gvn_B Zeta; postsegregational 93.5 0.062 2.1E-06 56.7 5.2 26 32-57 32-57 (287)
341 1e6c_A Shikimate kinase; phosp 93.5 0.029 1E-06 54.1 2.5 24 34-57 3-26 (173)
342 2cdn_A Adenylate kinase; phosp 93.5 0.048 1.7E-06 54.1 4.1 26 32-57 19-44 (201)
343 3tr0_A Guanylate kinase, GMP k 93.5 0.039 1.3E-06 55.0 3.4 24 34-57 8-31 (205)
344 2bwj_A Adenylate kinase 5; pho 93.4 0.038 1.3E-06 54.7 3.3 24 34-57 13-36 (199)
345 3rfe_A Platelet glycoprotein I 93.4 0.14 4.7E-06 46.7 6.7 55 664-720 11-66 (130)
346 1uj2_A Uridine-cytidine kinase 93.4 0.045 1.5E-06 56.7 3.9 28 31-58 20-47 (252)
347 3asz_A Uridine kinase; cytidin 93.4 0.048 1.6E-06 54.6 4.0 27 32-58 5-31 (211)
348 2r2a_A Uncharacterized protein 93.3 0.12 4.2E-06 51.0 6.7 23 34-56 6-28 (199)
349 3p32_A Probable GTPase RV1496/ 93.3 0.11 3.7E-06 56.8 7.0 40 21-60 67-106 (355)
350 1nn5_A Similar to deoxythymidy 93.3 0.045 1.5E-06 54.9 3.6 28 33-60 9-36 (215)
351 3e70_C DPA, signal recognition 93.3 0.1 3.6E-06 55.9 6.7 29 32-60 128-156 (328)
352 3tqc_A Pantothenate kinase; bi 93.3 0.071 2.4E-06 56.9 5.3 29 31-59 90-118 (321)
353 1aky_A Adenylate kinase; ATP:A 93.3 0.039 1.3E-06 55.8 3.1 25 33-57 4-28 (220)
354 1qf9_A UMP/CMP kinase, protein 93.3 0.047 1.6E-06 53.6 3.7 25 33-57 6-30 (194)
355 2bbw_A Adenylate kinase 4, AK4 93.3 0.043 1.5E-06 56.5 3.5 25 33-57 27-51 (246)
356 1cke_A CK, MSSA, protein (cyti 93.3 0.045 1.5E-06 55.6 3.6 24 34-57 6-29 (227)
357 1zu4_A FTSY; GTPase, signal re 93.3 0.11 3.8E-06 55.5 6.8 37 32-69 104-140 (320)
358 1uf9_A TT1252 protein; P-loop, 93.3 0.048 1.6E-06 54.2 3.7 26 31-56 6-31 (203)
359 3cmu_A Protein RECA, recombina 93.2 0.068 2.3E-06 70.0 5.9 48 21-69 1414-1462(2050)
360 2j41_A Guanylate kinase; GMP, 93.2 0.044 1.5E-06 54.6 3.4 25 33-57 6-30 (207)
361 4gp7_A Metallophosphoesterase; 93.2 0.038 1.3E-06 53.3 2.8 23 32-54 8-30 (171)
362 3a4m_A L-seryl-tRNA(SEC) kinas 93.2 0.051 1.7E-06 56.6 3.9 26 33-58 4-29 (260)
363 2qt1_A Nicotinamide riboside k 93.1 0.049 1.7E-06 54.4 3.6 26 31-56 19-44 (207)
364 2ck3_D ATP synthase subunit be 93.1 0.18 6.3E-06 56.0 8.3 55 32-89 152-206 (482)
365 1pgv_A TMD-1, tropomodulin TMD 93.1 0.069 2.4E-06 52.4 4.4 16 520-535 96-111 (197)
366 2dr3_A UPF0273 protein PH0284; 93.1 0.069 2.4E-06 54.9 4.7 37 32-69 22-58 (247)
367 2wwf_A Thymidilate kinase, put 93.1 0.048 1.7E-06 54.6 3.4 28 33-60 10-37 (212)
368 3rfe_A Platelet glycoprotein I 93.1 0.14 4.8E-06 46.6 6.2 52 402-454 12-66 (130)
369 2if2_A Dephospho-COA kinase; a 93.1 0.046 1.6E-06 54.4 3.2 22 34-55 2-23 (204)
370 1pgv_A TMD-1, tropomodulin TMD 93.0 0.069 2.4E-06 52.3 4.3 35 421-455 42-82 (197)
371 3bgw_A DNAB-like replicative h 93.0 0.24 8.4E-06 55.6 9.4 49 19-69 184-232 (444)
372 2pbr_A DTMP kinase, thymidylat 93.0 0.054 1.9E-06 53.3 3.6 24 35-58 2-25 (195)
373 2pez_A Bifunctional 3'-phospho 93.0 0.063 2.2E-06 52.1 4.0 28 32-59 4-31 (179)
374 3k1j_A LON protease, ATP-depen 92.9 0.05 1.7E-06 64.2 3.7 48 10-61 41-88 (604)
375 1htw_A HI0065; nucleotide-bind 92.9 0.081 2.8E-06 50.1 4.5 27 31-57 31-57 (158)
376 1gtv_A TMK, thymidylate kinase 92.8 0.037 1.3E-06 55.5 2.2 25 35-59 2-26 (214)
377 3b9q_A Chloroplast SRP recepto 92.8 0.14 4.7E-06 54.3 6.6 28 32-59 99-126 (302)
378 1jjv_A Dephospho-COA kinase; P 92.8 0.056 1.9E-06 53.9 3.4 22 34-55 3-24 (206)
379 3hjn_A DTMP kinase, thymidylat 92.8 0.29 9.8E-06 48.3 8.5 33 35-68 2-34 (197)
380 1lvg_A Guanylate kinase, GMP k 92.8 0.044 1.5E-06 54.3 2.6 25 34-58 5-29 (198)
381 2p5t_B PEZT; postsegregational 92.8 0.082 2.8E-06 54.7 4.7 28 31-58 30-57 (253)
382 3gd7_A Fusion complex of cysti 92.7 0.31 1.1E-05 53.5 9.5 24 32-55 46-69 (390)
383 2grj_A Dephospho-COA kinase; T 92.7 0.067 2.3E-06 52.6 3.7 26 32-57 11-36 (192)
384 1zd8_A GTP:AMP phosphotransfer 92.7 0.052 1.8E-06 55.1 3.1 25 33-57 7-31 (227)
385 2jeo_A Uridine-cytidine kinase 92.7 0.071 2.4E-06 54.9 4.1 27 31-57 23-49 (245)
386 3fb4_A Adenylate kinase; psych 92.7 0.063 2.1E-06 54.0 3.6 23 35-57 2-24 (216)
387 4e22_A Cytidylate kinase; P-lo 92.7 0.059 2E-06 55.7 3.5 25 33-57 27-51 (252)
388 1tf7_A KAIC; homohexamer, hexa 92.7 0.19 6.5E-06 58.1 8.1 49 20-69 268-316 (525)
389 3aez_A Pantothenate kinase; tr 92.6 0.072 2.4E-06 56.9 4.1 29 31-59 88-116 (312)
390 1zak_A Adenylate kinase; ATP:A 92.6 0.047 1.6E-06 55.3 2.6 26 33-58 5-30 (222)
391 1rj9_A FTSY, signal recognitio 92.6 0.1 3.4E-06 55.5 5.2 29 32-60 101-129 (304)
392 1znw_A Guanylate kinase, GMP k 92.6 0.058 2E-06 53.9 3.1 25 33-57 20-44 (207)
393 2wsm_A Hydrogenase expression/ 92.6 0.11 3.7E-06 52.4 5.2 47 12-60 11-57 (221)
394 2z0h_A DTMP kinase, thymidylat 92.6 0.068 2.3E-06 52.7 3.6 25 35-59 2-26 (197)
395 1m7g_A Adenylylsulfate kinase; 92.5 0.083 2.8E-06 52.9 4.2 27 32-58 24-50 (211)
396 2hf9_A Probable hydrogenase ni 92.5 0.095 3.3E-06 53.0 4.7 41 18-60 25-65 (226)
397 3dl0_A Adenylate kinase; phosp 92.5 0.065 2.2E-06 53.9 3.4 23 35-57 2-24 (216)
398 3d3q_A TRNA delta(2)-isopenten 92.4 0.071 2.4E-06 57.1 3.7 24 34-57 8-31 (340)
399 2ffh_A Protein (FFH); SRP54, s 92.4 0.28 9.6E-06 54.4 8.6 37 32-69 97-133 (425)
400 3nwj_A ATSK2; P loop, shikimat 92.4 0.052 1.8E-06 55.8 2.5 24 34-57 49-72 (250)
401 1fx0_B ATP synthase beta chain 92.3 0.38 1.3E-05 53.8 9.5 55 32-89 164-218 (498)
402 3be4_A Adenylate kinase; malar 92.3 0.062 2.1E-06 54.1 3.0 24 34-57 6-29 (217)
403 1z6g_A Guanylate kinase; struc 92.3 0.055 1.9E-06 54.6 2.5 26 32-57 22-47 (218)
404 2xxa_A Signal recognition part 92.3 0.19 6.4E-06 56.2 7.1 52 18-69 78-136 (433)
405 2f1r_A Molybdopterin-guanine d 92.2 0.064 2.2E-06 51.6 2.8 36 34-69 3-39 (171)
406 2og2_A Putative signal recogni 92.2 0.19 6.4E-06 54.5 6.7 29 32-60 156-184 (359)
407 2v54_A DTMP kinase, thymidylat 92.1 0.067 2.3E-06 53.1 3.0 24 34-57 5-28 (204)
408 3end_A Light-independent proto 92.1 0.12 4.2E-06 55.1 5.3 38 31-69 39-76 (307)
409 1s96_A Guanylate kinase, GMP k 92.1 0.07 2.4E-06 53.7 3.1 27 32-58 15-41 (219)
410 3ake_A Cytidylate kinase; CMP 92.1 0.083 2.9E-06 52.6 3.7 23 35-57 4-26 (208)
411 3r20_A Cytidylate kinase; stru 92.1 0.076 2.6E-06 53.8 3.3 24 34-57 10-33 (233)
412 4hlc_A DTMP kinase, thymidylat 92.0 0.4 1.4E-05 47.6 8.4 29 34-62 3-31 (205)
413 1np6_A Molybdopterin-guanine d 91.9 0.086 2.9E-06 50.8 3.3 27 33-59 6-32 (174)
414 3e1s_A Exodeoxyribonuclease V, 91.9 0.23 7.8E-06 57.8 7.5 28 34-61 205-232 (574)
415 3crm_A TRNA delta(2)-isopenten 91.9 0.086 2.9E-06 56.1 3.6 24 34-57 6-29 (323)
416 3exa_A TRNA delta(2)-isopenten 91.9 0.086 2.9E-06 55.5 3.5 24 34-57 4-27 (322)
417 1ak2_A Adenylate kinase isoenz 91.8 0.087 3E-06 53.7 3.4 25 33-57 16-40 (233)
418 2fz4_A DNA repair protein RAD2 91.8 1.8 6.3E-05 43.8 13.4 39 14-57 94-132 (237)
419 2i3b_A HCR-ntpase, human cance 91.8 0.083 2.8E-06 51.8 3.1 24 35-58 3-26 (189)
420 1vht_A Dephospho-COA kinase; s 91.8 0.1 3.4E-06 52.5 3.8 23 33-55 4-26 (218)
421 1svm_A Large T antigen; AAA+ f 91.7 0.11 3.9E-06 56.7 4.4 27 31-57 167-193 (377)
422 2f6r_A COA synthase, bifunctio 91.7 0.094 3.2E-06 55.1 3.7 24 32-55 74-97 (281)
423 2xb4_A Adenylate kinase; ATP-b 91.7 0.095 3.2E-06 53.0 3.6 23 35-57 2-24 (223)
424 3a8t_A Adenylate isopentenyltr 91.7 0.067 2.3E-06 57.1 2.4 25 33-57 40-64 (339)
425 1e4v_A Adenylate kinase; trans 91.7 0.095 3.3E-06 52.6 3.5 23 35-57 2-24 (214)
426 3zvl_A Bifunctional polynucleo 91.6 0.48 1.6E-05 52.8 9.5 26 32-57 257-282 (416)
427 3llm_A ATP-dependent RNA helic 91.6 0.4 1.4E-05 48.7 8.2 22 34-55 77-98 (235)
428 1a7j_A Phosphoribulokinase; tr 91.4 0.063 2.2E-06 56.7 1.9 27 32-58 4-30 (290)
429 3foz_A TRNA delta(2)-isopenten 91.4 0.11 3.7E-06 54.6 3.6 26 32-57 9-34 (316)
430 2onk_A Molybdate/tungstate ABC 91.3 0.097 3.3E-06 53.5 3.1 25 31-56 23-47 (240)
431 1yrb_A ATP(GTP)binding protein 91.3 0.19 6.6E-06 52.0 5.5 27 32-58 13-39 (262)
432 1cp2_A CP2, nitrogenase iron p 91.3 0.18 6.1E-06 52.6 5.3 35 34-69 2-36 (269)
433 1sq5_A Pantothenate kinase; P- 91.2 0.13 4.3E-06 55.0 4.0 28 31-58 78-105 (308)
434 3lnc_A Guanylate kinase, GMP k 91.2 0.073 2.5E-06 54.2 2.1 25 33-57 27-52 (231)
435 1cr0_A DNA primase/helicase; R 91.1 0.16 5.5E-06 53.9 4.8 38 32-69 34-71 (296)
436 3thx_A DNA mismatch repair pro 91.1 0.24 8E-06 60.8 6.7 24 32-55 661-684 (934)
437 1ls1_A Signal recognition part 91.1 0.2 6.7E-06 53.0 5.3 37 32-69 97-133 (295)
438 2j37_W Signal recognition part 91.0 0.29 1E-05 55.6 7.0 37 32-69 100-136 (504)
439 2j9r_A Thymidine kinase; TK1, 91.0 0.61 2.1E-05 46.1 8.3 110 32-155 27-139 (214)
440 2qmh_A HPR kinase/phosphorylas 90.9 0.1 3.6E-06 50.8 2.7 25 33-57 34-58 (205)
441 1q3t_A Cytidylate kinase; nucl 90.8 0.14 4.7E-06 52.3 3.7 27 31-57 14-40 (236)
442 3b85_A Phosphate starvation-in 90.8 0.092 3.2E-06 52.3 2.3 23 34-56 23-45 (208)
443 4edh_A DTMP kinase, thymidylat 90.8 0.32 1.1E-05 48.5 6.3 28 33-60 6-33 (213)
444 2v3c_C SRP54, signal recogniti 90.8 0.14 4.6E-06 57.3 3.9 36 33-69 99-134 (432)
445 4eaq_A DTMP kinase, thymidylat 90.8 0.16 5.5E-06 51.5 4.1 28 32-59 25-52 (229)
446 3tif_A Uncharacterized ABC tra 90.7 0.1 3.5E-06 53.1 2.6 24 32-55 30-53 (235)
447 2pcj_A ABC transporter, lipopr 90.6 0.1 3.5E-06 52.8 2.5 23 33-55 30-52 (224)
448 2afh_E Nitrogenase iron protei 90.6 0.22 7.4E-06 52.6 5.1 36 33-69 2-37 (289)
449 4akg_A Glutathione S-transfera 90.5 0.69 2.4E-05 62.9 10.9 134 34-184 1268-1431(2695)
450 1ltq_A Polynucleotide kinase; 90.5 0.14 4.9E-06 54.4 3.7 23 34-56 3-25 (301)
451 2p67_A LAO/AO transport system 90.5 0.32 1.1E-05 52.6 6.5 30 31-60 54-83 (341)
452 1nlf_A Regulatory protein REPA 90.4 0.2 6.9E-06 52.5 4.7 27 33-59 30-56 (279)
453 2yhs_A FTSY, cell division pro 90.4 0.22 7.4E-06 56.0 5.1 35 32-68 292-326 (503)
454 2cbz_A Multidrug resistance-as 90.3 0.12 4E-06 52.9 2.6 24 33-56 31-54 (237)
455 1g8f_A Sulfate adenylyltransfe 90.3 0.21 7.1E-06 56.8 4.9 46 14-59 376-421 (511)
456 2ocp_A DGK, deoxyguanosine kin 90.3 0.16 5.5E-06 52.0 3.7 26 33-58 2-27 (241)
457 2orw_A Thymidine kinase; TMTK, 90.2 0.21 7.3E-06 48.6 4.3 26 34-59 4-29 (184)
458 3gfo_A Cobalt import ATP-bindi 90.2 0.12 4.1E-06 53.9 2.6 23 33-55 34-56 (275)
459 3eph_A TRNA isopentenyltransfe 90.2 0.16 5.5E-06 55.4 3.7 24 34-57 3-26 (409)
460 2d2e_A SUFC protein; ABC-ATPas 90.1 0.15 5E-06 52.6 3.2 23 33-55 29-51 (250)
461 2zu0_C Probable ATP-dependent 90.0 0.15 5.1E-06 53.1 3.2 24 33-56 46-69 (267)
462 1b0u_A Histidine permease; ABC 90.0 0.13 4.4E-06 53.4 2.6 25 32-56 31-55 (262)
463 2v9p_A Replication protein E1; 90.0 0.19 6.4E-06 53.1 3.9 27 31-57 124-150 (305)
464 1ji0_A ABC transporter; ATP bi 90.0 0.13 4.5E-06 52.6 2.7 23 33-55 32-54 (240)
465 1sgw_A Putative ABC transporte 89.9 0.11 3.8E-06 51.9 2.1 23 34-56 36-58 (214)
466 1mv5_A LMRA, multidrug resista 89.9 0.15 5.1E-06 52.3 3.0 24 32-55 27-50 (243)
467 4g1u_C Hemin import ATP-bindin 89.9 0.13 4.5E-06 53.4 2.6 24 33-56 37-60 (266)
468 2olj_A Amino acid ABC transpor 89.9 0.13 4.5E-06 53.3 2.6 25 32-56 49-73 (263)
469 2qm8_A GTPase/ATPase; G protei 89.8 0.4 1.4E-05 51.8 6.5 29 31-59 53-81 (337)
470 1g6h_A High-affinity branched- 89.8 0.14 4.6E-06 53.1 2.7 23 33-55 33-55 (257)
471 3thx_B DNA mismatch repair pro 89.7 0.42 1.5E-05 58.4 7.3 24 32-55 672-695 (918)
472 2pze_A Cystic fibrosis transme 89.7 0.14 4.8E-06 51.9 2.6 25 33-57 34-58 (229)
473 3fdi_A Uncharacterized protein 89.6 0.19 6.4E-06 49.8 3.4 25 34-58 7-31 (201)
474 2ff7_A Alpha-hemolysin translo 89.6 0.14 5E-06 52.5 2.7 24 33-56 35-58 (247)
475 1vpl_A ABC transporter, ATP-bi 89.6 0.14 5E-06 52.7 2.6 24 32-55 40-63 (256)
476 2zts_A Putative uncharacterize 89.4 0.16 5.6E-06 52.1 2.9 37 32-69 29-66 (251)
477 2ghi_A Transport protein; mult 89.4 0.15 5.1E-06 52.8 2.6 24 33-56 46-69 (260)
478 3cr8_A Sulfate adenylyltranfer 89.4 0.3 1E-05 56.3 5.3 28 32-59 368-395 (552)
479 2qi9_C Vitamin B12 import ATP- 89.4 0.15 5.3E-06 52.3 2.6 25 33-57 26-50 (249)
480 1oix_A RAS-related protein RAB 89.3 0.19 6.6E-06 49.2 3.2 24 33-56 29-52 (191)
481 2ixe_A Antigen peptide transpo 89.2 0.16 5.5E-06 52.9 2.7 25 32-56 44-68 (271)
482 2ihy_A ABC transporter, ATP-bi 89.2 0.16 5.5E-06 53.1 2.6 24 33-56 47-70 (279)
483 3v9p_A DTMP kinase, thymidylat 89.1 0.32 1.1E-05 49.0 4.7 28 33-60 25-52 (227)
484 2nq2_C Hypothetical ABC transp 89.1 0.16 5.6E-06 52.3 2.6 24 33-56 31-54 (253)
485 2yz2_A Putative ABC transporte 89.1 0.16 5.6E-06 52.7 2.7 23 33-55 33-55 (266)
486 3kjh_A CO dehydrogenase/acetyl 89.0 0.35 1.2E-05 49.6 5.1 33 36-69 3-35 (254)
487 2dyk_A GTP-binding protein; GT 88.9 0.25 8.4E-06 46.5 3.6 23 34-56 2-24 (161)
488 3lv8_A DTMP kinase, thymidylat 88.8 0.43 1.5E-05 48.4 5.4 28 33-60 27-54 (236)
489 4dzz_A Plasmid partitioning pr 88.7 0.33 1.1E-05 48.0 4.6 35 34-69 2-37 (206)
490 3zq6_A Putative arsenical pump 88.7 0.36 1.2E-05 51.8 5.2 36 33-69 14-49 (324)
491 3cmw_A Protein RECA, recombina 88.6 0.64 2.2E-05 60.2 8.0 96 20-125 718-819 (1706)
492 2wji_A Ferrous iron transport 88.6 0.27 9.3E-06 46.7 3.7 22 34-55 4-25 (165)
493 2f9l_A RAB11B, member RAS onco 88.5 0.24 8.3E-06 48.8 3.3 24 33-56 5-28 (199)
494 2vp4_A Deoxynucleoside kinase; 88.5 0.18 6.3E-06 51.1 2.5 26 31-56 18-43 (230)
495 3nh6_A ATP-binding cassette SU 88.3 0.19 6.4E-06 53.3 2.5 23 33-55 80-102 (306)
496 3sop_A Neuronal-specific septi 88.2 0.23 7.8E-06 51.7 3.0 23 35-57 4-26 (270)
497 3io3_A DEHA2D07832P; chaperone 88.2 0.44 1.5E-05 51.5 5.4 38 31-69 16-55 (348)
498 3kta_A Chromosome segregation 88.2 0.24 8.2E-06 48.0 3.0 23 35-57 28-50 (182)
499 3ld9_A DTMP kinase, thymidylat 88.1 0.35 1.2E-05 48.5 4.2 28 32-59 20-47 (223)
500 2pjz_A Hypothetical protein ST 88.1 0.21 7.2E-06 51.7 2.6 25 33-57 30-54 (263)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=6.4e-41 Score=396.48 Aligned_cols=298 Identities=16% Similarity=0.131 Sum_probs=237.8
Q ss_pred cccchhHHHHHHHhcCC-CCCeEEEEEEcCCcchHHHHHHHHHH----HhhcCCCcceEEEEehHhhhhc--cCHHHHHH
Q 001979 13 VGMDYRLEQIYLMLGTG-LDEARILGICGMGGIGKTTLARFVFD----NISYQFDDGSSFLANVREVSQT--RGLVALQE 85 (987)
Q Consensus 13 vGr~~~~~~l~~~L~~~-~~~~~~v~I~G~gGiGKTtLA~~v~~----~~~~~f~~~~~~~~~~~~~~~~--~~~~~l~~ 85 (987)
|||+.++++|.++|..+ ..++++|+|+||||+||||||+++|+ +++.+|+ +++|+. ++.. .+...++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~-~~~wv~----vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYD-SIVWLK----DSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBS-EEEEEE----CCCCSTTHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCC-cEEEEE----ECCCCCCCHHHHHH
Confidence 59999999999999654 34689999999999999999999997 6889998 999996 4433 36788999
Q ss_pred HHHHHHhcCCC-cccc-----cchhhHHHHHHHhcCC-ceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCccccc
Q 001979 86 QLVSEILLDKN-VKIW-----DVHKGCHMIRIKLRHK-RVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDRHLLV 158 (987)
Q Consensus 86 ~ll~~l~~~~~-~~~~-----~~~~~~~~l~~~L~~k-~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~ 158 (987)
+++.++..... .... +.......+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++.
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGG
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHH
Confidence 99998765422 1121 2233478899999996 999999999998876 3322 27999999999999988
Q ss_pred ccC-cCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhhhcCCCHHHHHHHHHh-hhc
Q 001979 159 RCD-VEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSFLFARSKAEWKDALDR-LKY 236 (987)
Q Consensus 159 ~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~~~~~w~~~l~~-l~~ 236 (987)
.++ ....|+|++|+.+||++||.++||.... .+.+.+++++|+++|+|+||||+++|+.++.+.. +|...+.. +..
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~ 357 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLES 357 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhc
Confidence 775 4468999999999999999999986543 4677889999999999999999999999987742 33333332 222
Q ss_pred CCCchHHHHHHHhHhCccHHHHHHHh-----------heeeccCCCCHHHHHHHHHhC--CCCccc-----------cch
Q 001979 237 VPDQKIFEILKISYDGLQETEKKIFL-----------DIACFFKGKDKDQVRELLDSC--DFYPEI-----------GIS 292 (987)
Q Consensus 237 ~~~~~i~~~l~~sy~~L~~~~k~~fl-----------~la~f~~~~~~~~l~~~~~~~--~~~~~~-----------~~~ 292 (987)
.....+..++++||+.||++.|.||+ |||+||++++++ +++|.++ |++... +++
T Consensus 358 ~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~ 435 (549)
T 2a5y_B 358 RGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLK 435 (549)
T ss_dssp HCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHH
T ss_pred ccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHH
Confidence 24567888899999999999999999 999999998887 7789888 776432 589
Q ss_pred hhhcccceEEe----CCeEEecHHHHHHHHHHHhhcC
Q 001979 293 VLIDKCIITLS----NNILCMHDLIQDMGREIVRQQS 325 (987)
Q Consensus 293 ~L~~~~Li~~~----~~~~~mHdll~~~~~~i~~~~~ 325 (987)
.|++++|++.. ..+|+|||++|+++++++.+++
T Consensus 436 ~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 436 RLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 99999999876 2479999999999999887653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.5e-35 Score=383.14 Aligned_cols=308 Identities=22% Similarity=0.257 Sum_probs=244.9
Q ss_pred CCCCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHH---hhcCCCcceEEEEehHhhhhccCH
Q 001979 4 TLLSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDN---ISYQFDDGSSFLANVREVSQTRGL 80 (987)
Q Consensus 4 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~~~~~~~~~ 80 (987)
.+|..+..||||++++++|.++|....+++++|+|+||||+||||||+++|++ .+.+|.+.++|+.. .... ....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~-~~~~-~~~~ 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI-GKQD-KSGL 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC-CSCC-HHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE-CCcC-chHH
Confidence 45677788999999999999999766677899999999999999999999986 46668756667762 2111 1223
Q ss_pred HHHHHHHHHHHhcCCC---cccccchhhHHHHHHHhcCC--ceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCcc
Q 001979 81 VALQEQLVSEILLDKN---VKIWDVHKGCHMIRIKLRHK--RVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDRH 155 (987)
Q Consensus 81 ~~l~~~ll~~l~~~~~---~~~~~~~~~~~~l~~~L~~k--~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~~ 155 (987)
......++..+..... ....+.+.....++..+.++ |+||||||||+.++++.+ ++|++||||||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 3445556655433221 11234455666777777766 999999999998877664 67999999999999
Q ss_pred cccc-cCcCceEEcCC-CCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhhhcCCCHHHHHHHHHh
Q 001979 156 LLVR-CDVEDTYMVEK-LNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSFLFARSKAEWKDALDR 233 (987)
Q Consensus 156 v~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~~~~~w~~~l~~ 233 (987)
++.. .+....++++. |+.+||++||...++.. .+++.+.+++|+++|+|+||||+++|+.|+.+. ..|+..++.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 8854 45667899996 99999999999988433 234456799999999999999999999998766 578888887
Q ss_pred hhcCC-----------CchHHHHHHHhHhCccHHHHHHHhheeeccCCC--CHHHHHHHHHhCCCCccccchhhhcccce
Q 001979 234 LKYVP-----------DQKIFEILKISYDGLQETEKKIFLDIACFFKGK--DKDQVRELLDSCDFYPEIGISVLIDKCII 300 (987)
Q Consensus 234 l~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~~~~~~~~~~~L~~~~Li 300 (987)
+.... ...+..++++||+.|++++|+||+++|+||+++ +.+.+..+|.+++..++..++.|++++|+
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 76433 145899999999999999999999999999975 66789999988777778889999999999
Q ss_pred EEe-CC---eEEecHHHHHHHHHHHhhc
Q 001979 301 TLS-NN---ILCMHDLIQDMGREIVRQQ 324 (987)
Q Consensus 301 ~~~-~~---~~~mHdll~~~~~~i~~~~ 324 (987)
+.. ++ +|+||+++|+++++..+++
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 987 33 4999999999999886554
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.7e-35 Score=348.30 Aligned_cols=280 Identities=17% Similarity=0.123 Sum_probs=217.1
Q ss_pred CCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHH--HhhcCCCcceEEEEehHhhhhccCHHHHHHHH
Q 001979 10 EKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFD--NISYQFDDGSSFLANVREVSQTRGLVALQEQL 87 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 87 (987)
+..|||+.++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+.+++|++ ++...+...+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHH
Confidence 34599999999999999753 3478999999999999999999997 47889994578887 44455555666665
Q ss_pred HHHHhcCC---C--c-----ccccchhhHHHHHHHh---cCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCc
Q 001979 88 VSEILLDK---N--V-----KIWDVHKGCHMIRIKL---RHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDR 154 (987)
Q Consensus 88 l~~l~~~~---~--~-----~~~~~~~~~~~l~~~L---~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~ 154 (987)
+..+.... . . ...+.+.....+++.| +++|+||||||||+.++|+.+. +||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 55322110 0 0 0112334455666655 6899999999999999998863 699999999999
Q ss_pred ccccccCcCceEEcC------CCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhhhcCC--CHHH
Q 001979 155 HLLVRCDVEDTYMVE------KLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSFLFAR--SKAE 226 (987)
Q Consensus 155 ~v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~--~~~~ 226 (987)
.++..+.....|+++ +|+.+||++||+++. +.. ..++..++ |+|+||||+++|+.|+++ +.++
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 887644433456776 999999999999884 322 12333343 999999999999999977 7788
Q ss_pred HHHHHHhhhcCCCchHHHHHHHhHhCccHHH-HHHHhheeeccCCCC--HHHHHHHHHhCCC-CccccchhhhcccceEE
Q 001979 227 WKDALDRLKYVPDQKIFEILKISYDGLQETE-KKIFLDIACFFKGKD--KDQVRELLDSCDF-YPEIGISVLIDKCIITL 302 (987)
Q Consensus 227 w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~la~f~~~~~--~~~l~~~~~~~~~-~~~~~~~~L~~~~Li~~ 302 (987)
|+.. ....+..++++||+.|++++ |+||+++|+||++++ .+.+..+|++.|. .++..++.|+++||++.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 9763 35789999999999999999 999999999998764 5678999988753 35677999999999998
Q ss_pred e--CCeEEecHHHHHHH
Q 001979 303 S--NNILCMHDLIQDMG 317 (987)
Q Consensus 303 ~--~~~~~mHdll~~~~ 317 (987)
. .++|+|||+++++.
T Consensus 420 d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELK 436 (1221)
T ss_dssp CSSSSEEBCCCHHHHHH
T ss_pred eCCCCEEEehHHHHHHh
Confidence 6 46899999998854
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=339.08 Aligned_cols=333 Identities=21% Similarity=0.235 Sum_probs=245.9
Q ss_pred CCCCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh---hcCCCcceEEEEehHhhhhccCH
Q 001979 4 TLLSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI---SYQFDDGSSFLANVREVSQTRGL 80 (987)
Q Consensus 4 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~---~~~f~~~~~~~~~~~~~~~~~~~ 80 (987)
..|..+..||||+.++++|.++|....+..++|+|+||||+||||||++++++. +.+|++.++|+.... .. ...+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~-~~-~~~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-QD-KSGL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES-CC-HHHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC-Cc-hHHH
Confidence 456778899999999999999998655678999999999999999999999853 678965788876321 11 1111
Q ss_pred HHHHHHHHHHHhcCC---CcccccchhhHHHHHHHhcC--CceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCcc
Q 001979 81 VALQEQLVSEILLDK---NVKIWDVHKGCHMIRIKLRH--KRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDRH 155 (987)
Q Consensus 81 ~~l~~~ll~~l~~~~---~~~~~~~~~~~~~l~~~L~~--k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~~ 155 (987)
..-..++...+.... .....+.+.....+++.+.+ +++||||||||+..+++.+ ++|++||||||++.
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcH
Confidence 122222233322111 11223445566677777765 7899999999998776543 67999999999998
Q ss_pred cccccCcCceEEc---CCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhhhcCCCHHHHHHHHH
Q 001979 156 LLVRCDVEDTYMV---EKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSFLFARSKAEWKDALD 232 (987)
Q Consensus 156 v~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L~~~~~~~w~~~l~ 232 (987)
++..+. ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.++... .+|...++
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~ 343 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLK 343 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHH
Confidence 876543 345665 5899999999999998642 222346789999999999999999999998764 46988888
Q ss_pred hhhcCC-----------CchHHHHHHHhHhCccHHHHHHHhheeeccCCC--CHHHHHHHHHhCCCCccccchhhhcccc
Q 001979 233 RLKYVP-----------DQKIFEILKISYDGLQETEKKIFLDIACFFKGK--DKDQVRELLDSCDFYPEIGISVLIDKCI 299 (987)
Q Consensus 233 ~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~~~~~~~~~~~L~~~~L 299 (987)
.+.... ...+..++..||+.|+++.|.||+++|+||++. +.+.+..+|..........++.|++++|
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~L 423 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSL 423 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcC
Confidence 776432 247899999999999999999999999999875 5567888887665556778999999999
Q ss_pred eEEeC----CeEEecHHHHHHHHHHHhhc------------C-------CCCCCcceeccchhhHHHHhccccc
Q 001979 300 ITLSN----NILCMHDLIQDMGREIVRQQ------------S-------PGNPGQRSRLWLWMDISRVLTKNEV 350 (987)
Q Consensus 300 i~~~~----~~~~mHdll~~~~~~i~~~~------------~-------~~~~~~~~~l~~~~~~~~~l~~~~~ 350 (987)
+.... .+|+||+++|+++++....+ . +..++.+..+|..+.+.+++..+..
T Consensus 424 l~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~ 497 (591)
T 1z6t_A 424 LFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMH 497 (591)
T ss_dssp SEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCH
T ss_pred eEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCH
Confidence 98762 27999999999998772211 0 1223445566767777777665543
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.5e-30 Score=321.94 Aligned_cols=378 Identities=19% Similarity=0.161 Sum_probs=222.5
Q ss_pred ChhhhcCCCCCcEEEecCcccCCCCCc-CCcccceEEecCCCCC-CCCCCC-C-CCCceEEEcCCCCcc-ccccccCCCC
Q 001979 369 NPESFSRMKNLRLLKIRDVCLRHGIEY-LPDELRLLKWHGYPLR-SLPSNF-Q-PERLFKLNICYSLVE-QLWQGVQNMR 443 (987)
Q Consensus 369 ~~~~f~~~~~Lr~L~l~~~~l~~~~~~-l~~~Lr~L~~~~~~l~-~lp~~~-~-~~~L~~L~l~~~~i~-~l~~~~~~l~ 443 (987)
.+..|..+++|++|++++|.+.+.+.. -.+.|++|++.+|.+. .+|..+ . +.+|++|++++|.+. .+|..+..++
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 355677777777777777766543222 2346777777777776 666665 3 377778888777776 4566777777
Q ss_pred CCCEEecCCCCCCCCCCC--CCCCCcccEEeccCCcCCccccCccccCC-CCcEEeCcCCCCCccCCchhhh---hhH--
Q 001979 444 HLKFIKLSHSVHLTKTPD--FTGVPKLERLVLDGCTNLSFVHPSIGLLK-RLKVLNMKECIRIKSFPAEIEW---ASL-- 515 (987)
Q Consensus 444 ~L~~L~Ls~~~~~~~~~~--~~~l~~L~~L~L~~~~~l~~~~~~i~~l~-~L~~L~L~~c~~l~~lp~~i~~---~~l-- 515 (987)
+|++|+|++|.+.+.+|. +.++++|++|++++|.....+|..+..++ +|++|++++|...+.+|..+.. ..+
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 777777777776655553 67777777777777765555665555554 5555555554433322222110 000
Q ss_pred -------------HHhhhccccceeecCCcCCc-ccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCC
Q 001979 516 -------------EIVQNAKRLLQLHLDQTSIE-EIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSK 581 (987)
Q Consensus 516 -------------~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~ 581 (987)
..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|..
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 12244555555555555554 4444455555555555555444444444444444444444444444
Q ss_pred CCcccccccCCCCCcEeeCCCCCCC-------------------------CCCccccCCCCCcEEEccCCCCCCCCcccc
Q 001979 582 LEEVPENLGHIASLENLDLGGTAIR-------------------------RPPSTIVLLENLKELSFHGCKGQRKSWSSL 636 (987)
Q Consensus 582 l~~lp~~l~~l~~L~~L~L~~~~i~-------------------------~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~ 636 (987)
.+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|......+..+
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 4444444444444444444444444 334444444444444444443221111111
Q ss_pred cccCC-------------------------------------------------CCCCCCCCCccccCCCCCCCcccEEe
Q 001979 637 IWLPF-------------------------------------------------YPRANRDSLGFFIPSLSGLHCLSRLD 667 (987)
Q Consensus 637 ~~~~~-------------------------------------------------l~~~~~~~~~~~~~~l~~l~~L~~L~ 667 (987)
..... .....+...+..+..+..+++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 00000 00000111222344577788999999
Q ss_pred cCCCCCCCCCCccccCCCCCCCEEeCCCCCCc-ccchhhhccCCCcEEecCCCcccccCCCC---ccccccccccccccc
Q 001979 668 LGDCNLQEGAIPNDLGSLSALTNLTLSRNNFF-SLPASINQLSRLETLNIDYCNRLKALPEL---PASIDGLFAHNCTSL 743 (987)
Q Consensus 668 Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~~~~C~~L 743 (987)
|++|.+. +.+|..++.+++|+.|+|++|+++ .+|..++++++|+.|+|++|+....+|.. .++|+.|+++++.--
T Consensus 639 Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 639 MSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCSSCCB-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CcCCccc-ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 9999986 678999999999999999999998 78999999999999999998877677753 246777777776544
Q ss_pred cccc
Q 001979 744 IKLC 747 (987)
Q Consensus 744 ~~l~ 747 (987)
..++
T Consensus 718 g~iP 721 (768)
T 3rgz_A 718 GPIP 721 (768)
T ss_dssp EECC
T ss_pred ccCC
Confidence 4444
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.2e-30 Score=322.70 Aligned_cols=367 Identities=21% Similarity=0.272 Sum_probs=285.8
Q ss_pred eChhhhcCCCCCcEEEecCcccCCCCC----cCCcccceEEecCCCCC-CCCCCC-CCC-CceEEEcCCCCccc-ccccc
Q 001979 368 LNPESFSRMKNLRLLKIRDVCLRHGIE----YLPDELRLLKWHGYPLR-SLPSNF-QPE-RLFKLNICYSLVEQ-LWQGV 439 (987)
Q Consensus 368 ~~~~~f~~~~~Lr~L~l~~~~l~~~~~----~l~~~Lr~L~~~~~~l~-~lp~~~-~~~-~L~~L~l~~~~i~~-l~~~~ 439 (987)
..+..|..+++|+.|++++|.+.+.+. .-..+|++|++.+|.+. .+|..+ .+. +|++|++++|.+.. ++..+
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 445667777777777777776543221 11246777777777776 666665 343 77788888777763 45555
Q ss_pred CC--CCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHH
Q 001979 440 QN--MRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLE 516 (987)
Q Consensus 440 ~~--l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~ 516 (987)
.. +++|++|+|++|.+...+|. +.++++|++|++++|.....+|..++.+++|++|++++|...+.+|..+
T Consensus 389 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~------ 462 (768)
T 3rgz_A 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL------ 462 (768)
T ss_dssp TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG------
T ss_pred hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH------
Confidence 44 77888888888887766665 8888899999999888777888888889999999999987777788766
Q ss_pred HhhhccccceeecCCcCCc-ccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCC
Q 001979 517 IVQNAKRLLQLHLDQTSIE-EIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASL 595 (987)
Q Consensus 517 ~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L 595 (987)
..+++|++|++++|.+. .+|..+..+++|++|++++|...+.+|..++.+++|++|++++|...+.+|..++.+++|
T Consensus 463 --~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 463 --MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp --GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred --cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence 78999999999999998 789999999999999999999999999999999999999999999988999999999999
Q ss_pred cEeeCCCCCCC-CCCccccCCCCCcEEEccCCC----------------------------------------------C
Q 001979 596 ENLDLGGTAIR-RPPSTIVLLENLKELSFHGCK----------------------------------------------G 628 (987)
Q Consensus 596 ~~L~L~~~~i~-~~p~~i~~l~~L~~L~L~~~~----------------------------------------------~ 628 (987)
+.|++++|.+. .+|..+.....+..+.+..+. .
T Consensus 541 ~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 620 (768)
T 3rgz_A 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620 (768)
T ss_dssp CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEE
T ss_pred CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccccee
Confidence 99999999987 567766655444333222100 0
Q ss_pred ---CCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCc-ccchh
Q 001979 629 ---QRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFF-SLPAS 704 (987)
Q Consensus 629 ---~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~ 704 (987)
....+.....+..+....+...+..+..++.+++|+.|+|++|.++ +.+|..++.+++|+.|+|++|+++ .+|..
T Consensus 621 ~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp EEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred cccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC-CCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 0001111223334556666667777888999999999999999996 679999999999999999999999 79999
Q ss_pred hhccCCCcEEecCCCcccccCCCC--ccccccccccccccc
Q 001979 705 INQLSRLETLNIDYCNRLKALPEL--PASIDGLFAHNCTSL 743 (987)
Q Consensus 705 i~~l~~L~~L~L~~c~~L~~lp~l--p~sL~~L~~~~C~~L 743 (987)
+..+++|+.|+|++|+....+|.. ..++....+.+++.|
T Consensus 700 l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp GGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred HhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence 999999999999999888888863 345555556666654
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.4e-30 Score=311.27 Aligned_cols=296 Identities=16% Similarity=0.166 Sum_probs=139.3
Q ss_pred CCCceEEEcCCCCcc-ccccccCCCCCCCEEecCCCC-CCC-CCCC-CCCC------CcccEEeccCCcCCccccC--cc
Q 001979 419 PERLFKLNICYSLVE-QLWQGVQNMRHLKFIKLSHSV-HLT-KTPD-FTGV------PKLERLVLDGCTNLSFVHP--SI 486 (987)
Q Consensus 419 ~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~Ls~~~-~~~-~~~~-~~~l------~~L~~L~L~~~~~l~~~~~--~i 486 (987)
+.+|++|++++|.+. .+|..+.++++|++|+|++|. +.. .+|. +..+ ++|++|++++|... .+|. .+
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 444444444444332 234444444444444444444 322 2222 2222 44444444444332 4444 44
Q ss_pred ccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCC-CCEEeccCCCCCcccCccC
Q 001979 487 GLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSR-LTVLTLRDCKKLVSLPSSI 565 (987)
Q Consensus 487 ~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~~~~l~~lp~~l 565 (987)
+.+++|++|++++|...+.+| .+ ..+++|+.|++++|.+..+|..+..+++ |++|++++|... .+|..+
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~--------~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AF--------GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CC--------EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred ccCCCCCEEeCcCCcCccchh-hh--------CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 444444444444443332444 22 4455555555555555555555555555 555555555433 455444
Q ss_pred CCCC--CCCEEEecCCCCCCccccccc-------CCCCCcEeeCCCCCCCCCCcccc-CCCCCcEEEccCCCCCCCCccc
Q 001979 566 SDLR--SLKVLNLNGCSKLEEVPENLG-------HIASLENLDLGGTAIRRPPSTIV-LLENLKELSFHGCKGQRKSWSS 635 (987)
Q Consensus 566 ~~l~--~L~~L~l~~c~~l~~lp~~l~-------~l~~L~~L~L~~~~i~~~p~~i~-~l~~L~~L~L~~~~~~~~~~~~ 635 (987)
..++ +|+.|++++|......|..+. .+++|+.|++++|.+..+|..+. .+++|+.|++++|.........
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 476 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHH
Confidence 4332 555555555555554555444 44555555555555555554432 3555555555555433111000
Q ss_pred ccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccC--CCCCCCEEeCCCCCCcccchhhhccCCCcE
Q 001979 636 LIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLG--SLSALTNLTLSRNNFFSLPASINQLSRLET 713 (987)
Q Consensus 636 ~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~--~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~ 713 (987)
... ..+.+.++++|+.|+|++|.+. .+|..+. .+++|+.|+|++|+++.+|..+..+++|+.
T Consensus 477 ~~~--------------~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~ 540 (636)
T 4eco_A 477 LKD--------------ENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540 (636)
T ss_dssp SEE--------------TTEECTTGGGCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCE
T ss_pred hcc--------------ccccccccCCccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCE
Confidence 000 0000112235666666666654 2555554 566666666666666666666666666666
Q ss_pred EecCC------CcccccCCCC---ccccccccccccc
Q 001979 714 LNIDY------CNRLKALPEL---PASIDGLFAHNCT 741 (987)
Q Consensus 714 L~L~~------c~~L~~lp~l---p~sL~~L~~~~C~ 741 (987)
|+|++ |+..+.+|.. .++|+.|++.+|.
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 66633 2333344421 2445555555544
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=8.5e-29 Score=303.62 Aligned_cols=337 Identities=16% Similarity=0.141 Sum_probs=208.1
Q ss_pred CCCCC-CCCCceEEEcCCCCccc------------------cccccC--CCCCCCEEecCCCCCCCCCCC-CCCCCcccE
Q 001979 413 LPSNF-QPERLFKLNICYSLVEQ------------------LWQGVQ--NMRHLKFIKLSHSVHLTKTPD-FTGVPKLER 470 (987)
Q Consensus 413 lp~~~-~~~~L~~L~l~~~~i~~------------------l~~~~~--~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~ 470 (987)
+|..+ .+.+|++|+|++|.++. +|..+. ++++|++|+|++|.+.+.+|. +.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 56555 56667777777776666 666665 677777777777666666664 666777777
Q ss_pred EeccCCc-CCc-cccCccccCC-------CCcEEeCcCCCCCccCCc--hhhhhhHHHhhhccccceeecCCcCCcccCc
Q 001979 471 LVLDGCT-NLS-FVHPSIGLLK-------RLKVLNMKECIRIKSFPA--EIEWASLEIVQNAKRLLQLHLDQTSIEEIPP 539 (987)
Q Consensus 471 L~L~~~~-~l~-~~~~~i~~l~-------~L~~L~L~~c~~l~~lp~--~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~ 539 (987)
|+|++|. ... .+|..++.++ +|++|+|++|... .+|. .+ +.+++|+.|++++|.+..+|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l--------~~L~~L~~L~Ls~N~l~~lp- 589 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL--------QKMVKLGLLDCVHNKVRHLE- 589 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH--------TTCTTCCEEECTTSCCCBCC-
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh--------hcCCCCCEEECCCCCcccch-
Confidence 7777665 333 4555554444 6777777766433 6665 44 56666777777777666666
Q ss_pred cccCCCCCCEEeccCCCCCcccCccCCCCCC-CCEEEecCCCCCCcccccccCCCC--CcEeeCCCCCCCCCCcc----c
Q 001979 540 SIKFLSRLTVLTLRDCKKLVSLPSSISDLRS-LKVLNLNGCSKLEEVPENLGHIAS--LENLDLGGTAIRRPPST----I 612 (987)
Q Consensus 540 ~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~-L~~L~l~~c~~l~~lp~~l~~l~~--L~~L~L~~~~i~~~p~~----i 612 (987)
.++.+++|+.|++++|... .+|..+..+++ |+.|++++|... .+|..+..+.. |+.|++++|.+.+.++. +
T Consensus 590 ~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 6666667777777666655 66666666666 777777666533 56665555543 66666666666543221 1
Q ss_pred c--CCCCCcEEEccCCCCCCCCcc---cccccCCCCCCCCCCCccccCC--------CCCCCcccEEecCCCCCCCCCCc
Q 001979 613 V--LLENLKELSFHGCKGQRKSWS---SLIWLPFYPRANRDSLGFFIPS--------LSGLHCLSRLDLGDCNLQEGAIP 679 (987)
Q Consensus 613 ~--~l~~L~~L~L~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~--------l~~l~~L~~L~Ls~~~l~~~~lp 679 (987)
. .+++|+.|++++|........ .+..+..+....+... ..+.. +.++++|+.|+|++|++. .+|
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp 744 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLS 744 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCC
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc--cch
Confidence 1 233666666666654421110 1122233333333322 22221 223448888888888886 478
Q ss_pred cccC--CCCCCCEEeCCCCCCcccchhhhccCCCcEEecCC------CcccccCCCC---cccccccccccccccccccC
Q 001979 680 NDLG--SLSALTNLTLSRNNFFSLPASINQLSRLETLNIDY------CNRLKALPEL---PASIDGLFAHNCTSLIKLCS 748 (987)
Q Consensus 680 ~~l~--~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~------c~~L~~lp~l---p~sL~~L~~~~C~~L~~l~~ 748 (987)
..+. .+++|+.|+|++|+++.+|..+..+++|+.|+|++ |+....+|.. .++|+.|++.+|.- ..++.
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred HHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 7776 88888888888888888888888888888888876 4444555542 35777788877753 65553
Q ss_pred CCcccCCCCceEEecccccc
Q 001979 749 PSNITRLTPRMFYLSNCFKL 768 (987)
Q Consensus 749 ~~~l~~~~~~~l~~~~C~~L 768 (987)
.. . .....+++++|+-.
T Consensus 824 ~l--~-~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 824 KL--T-PQLYILDIADNPNI 840 (876)
T ss_dssp CC--C-SSSCEEECCSCTTC
T ss_pred hh--c-CCCCEEECCCCCCC
Confidence 21 1 13457778887643
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=4.7e-29 Score=305.89 Aligned_cols=335 Identities=15% Similarity=0.141 Sum_probs=265.1
Q ss_pred hhhhcCCCCCcEEEecCcccCC------------------CCCcC----CcccceEEecCCC-CCCCCCCC-CCCCceEE
Q 001979 370 PESFSRMKNLRLLKIRDVCLRH------------------GIEYL----PDELRLLKWHGYP-LRSLPSNF-QPERLFKL 425 (987)
Q Consensus 370 ~~~f~~~~~Lr~L~l~~~~l~~------------------~~~~l----~~~Lr~L~~~~~~-l~~lp~~~-~~~~L~~L 425 (987)
|..|.++++|+.|++++|.+.+ -+..+ ...|++|++.+|. ...+|..+ .+.+|++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 5679999999999999998876 23332 2478889998887 45677766 78899999
Q ss_pred EcCCCC-ccc--cccccCC-------CCCCCEEecCCCCCCCCCCC---CCCCCcccEEeccCCcCCccccCccccCCCC
Q 001979 426 NICYSL-VEQ--LWQGVQN-------MRHLKFIKLSHSVHLTKTPD---FTGVPKLERLVLDGCTNLSFVHPSIGLLKRL 492 (987)
Q Consensus 426 ~l~~~~-i~~--l~~~~~~-------l~~L~~L~Ls~~~~~~~~~~---~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L 492 (987)
++++|. ++. +|..+.. +++|++|+|++|.+. .+|. +.++++|++|+|++|... .+| .++.+++|
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 999887 764 6765544 448999999999888 5555 888999999999987755 777 88889999
Q ss_pred cEEeCcCCCCCccCCchhhhhhHHHhhhccc-cceeecCCcCCcccCccccCCCC--CCEEeccCCCCCcccCc---cCC
Q 001979 493 KVLNMKECIRIKSFPAEIEWASLEIVQNAKR-LLQLHLDQTSIEEIPPSIKFLSR--LTVLTLRDCKKLVSLPS---SIS 566 (987)
Q Consensus 493 ~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~-L~~L~L~~~~i~~lp~~i~~l~~--L~~L~L~~~~~l~~lp~---~l~ 566 (987)
+.|+|++|.. ..+|..+ ..+++ |+.|++++|.+..+|..+..++. |+.|++++|...+.+|. .+.
T Consensus 598 ~~L~Ls~N~l-~~lp~~l--------~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 598 TDLKLDYNQI-EEIPEDF--------CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp SEEECCSSCC-SCCCTTS--------CEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred eEEECcCCcc-ccchHHH--------hhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 9999998854 4788766 67888 99999999999888888777654 99999999887766553 222
Q ss_pred --CCCCCCEEEecCCCCCCcccccc-cCCCCCcEeeCCCCCCCCCCccccCC--------CCCcEEEccCCCCCCCCccc
Q 001979 567 --DLRSLKVLNLNGCSKLEEVPENL-GHIASLENLDLGGTAIRRPPSTIVLL--------ENLKELSFHGCKGQRKSWSS 635 (987)
Q Consensus 567 --~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~L~~~~i~~~p~~i~~l--------~~L~~L~L~~~~~~~~~~~~ 635 (987)
.+++|+.|++++|... .+|..+ ..+++|+.|+|++|.+..+|..+... ++|+.|+|++|...
T Consensus 669 ~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~------ 741 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT------ 741 (876)
T ss_dssp TCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC------
T ss_pred cccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc------
Confidence 3458899999888655 667655 47889999999999888887765443 38899999888643
Q ss_pred ccccCCCCCCCCCCCccccCCCC--CCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCC------CCCc-ccchhhh
Q 001979 636 LIWLPFYPRANRDSLGFFIPSLS--GLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSR------NNFF-SLPASIN 706 (987)
Q Consensus 636 ~~~~~~l~~~~~~~~~~~~~~l~--~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~------n~l~-~lp~~i~ 706 (987)
..+..+. .+++|+.|+|++|.+.. +|..+..+++|+.|+|++ |++. .+|..+.
T Consensus 742 ----------------~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 742 ----------------SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp ----------------CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred ----------------cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 1233344 78999999999999975 899999999999999987 5554 7899999
Q ss_pred ccCCCcEEecCCCcccccCCC-Ccccccccccccccc
Q 001979 707 QLSRLETLNIDYCNRLKALPE-LPASIDGLFAHNCTS 742 (987)
Q Consensus 707 ~l~~L~~L~L~~c~~L~~lp~-lp~sL~~L~~~~C~~ 742 (987)
.+++|+.|+|++|+. +.+|. ++++|+.|++++|+-
T Consensus 804 ~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp GCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTT
T ss_pred cCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCC
Confidence 999999999999765 88886 678999999999873
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=8.8e-28 Score=290.27 Aligned_cols=365 Identities=19% Similarity=0.180 Sum_probs=242.4
Q ss_pred eeEEEecCCCCCeeeChhhhcCCCCCcEEEecCcccCCCCC---cCCcccceEEecCCCCCCC-CCCC-CCCCceEEEcC
Q 001979 354 VEGIICLQPSKGVKLNPESFSRMKNLRLLKIRDVCLRHGIE---YLPDELRLLKWHGYPLRSL-PSNF-QPERLFKLNIC 428 (987)
Q Consensus 354 ~~~i~l~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~---~l~~~Lr~L~~~~~~l~~l-p~~~-~~~~L~~L~l~ 428 (987)
++.+.+... .-..+.+..|.++++|++|++++|.+..... .-..+|++|++.+|.+..+ |..| .+.+|++|+++
T Consensus 35 l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 35 TECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp CCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred CcEEEccCC-ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 444444433 2335667899999999999999987654211 2235899999999999887 4555 89999999999
Q ss_pred CCCcccc-ccccCCCCCCCEEecCCCCCCC-CCCCCCCCCcccEEeccCCcCCccccCccccCCCCc--EEeCcCCCCCc
Q 001979 429 YSLVEQL-WQGVQNMRHLKFIKLSHSVHLT-KTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLK--VLNMKECIRIK 504 (987)
Q Consensus 429 ~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~~-~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~--~L~L~~c~~l~ 504 (987)
+|.++.+ +..+.++++|++|+|++|.+.. ..|.+..+++|++|++++|......+..++.+++|+ .|++++|....
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 9999988 6788999999999999999887 447777799999999999877666677788899998 89999986554
Q ss_pred cCCchhhhhhH-----------------------------------------HHhhhcc--ccceeecCCcCCcccCcc-
Q 001979 505 SFPAEIEWASL-----------------------------------------EIVQNAK--RLLQLHLDQTSIEEIPPS- 540 (987)
Q Consensus 505 ~lp~~i~~~~l-----------------------------------------~~~~~l~--~L~~L~L~~~~i~~lp~~- 540 (987)
..|..+....+ ..+..+. +|+.|++++|.+..++..
T Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~ 273 (606)
T 3t6q_A 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273 (606)
T ss_dssp ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH
Confidence 44433211100 0011111 566677777777666544
Q ss_pred ccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCC-CCCc-cccCCCCC
Q 001979 541 IKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIR-RPPS-TIVLLENL 618 (987)
Q Consensus 541 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~~p~-~i~~l~~L 618 (987)
+..+++|++|++++|.. ..+|..+..+++|++|++++|......|..+..+++|+.|++++|.+. .+|. .+..+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCC-SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCcc-CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 66677777777777643 366666777777777777776655555666667777777777777665 3433 36667777
Q ss_pred cEEEccCCCCCCCC-----cccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeC
Q 001979 619 KELSFHGCKGQRKS-----WSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTL 693 (987)
Q Consensus 619 ~~L~L~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L 693 (987)
+.|++++|...... +..+..+..+....+...+..+..+..+++|+.|++++|.+.....+..+..+++|+.|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 77777766643321 2222233333444444334444556666667777777766653323334666667777777
Q ss_pred CCCCCccc-chhhhccCCCcEEecCCCc
Q 001979 694 SRNNFFSL-PASINQLSRLETLNIDYCN 720 (987)
Q Consensus 694 ~~n~l~~l-p~~i~~l~~L~~L~L~~c~ 720 (987)
++|.+... |..+..+++|+.|++++|+
T Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred CCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 77666643 4455666677777776654
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=6.3e-29 Score=300.18 Aligned_cols=336 Identities=16% Similarity=0.172 Sum_probs=285.7
Q ss_pred hhhhcCCCCCcEEEecCcccCC------------------CCCcCC----cccceEEecCCCC-CCCCCCC-CCCCceEE
Q 001979 370 PESFSRMKNLRLLKIRDVCLRH------------------GIEYLP----DELRLLKWHGYPL-RSLPSNF-QPERLFKL 425 (987)
Q Consensus 370 ~~~f~~~~~Lr~L~l~~~~l~~------------------~~~~l~----~~Lr~L~~~~~~l-~~lp~~~-~~~~L~~L 425 (987)
+..|+++++|++|++++|.+.+ -+..+. ..|++|++.+|.+ ..+|..+ .+.+|++|
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 4579999999999999998776 333333 5799999999985 5678777 79999999
Q ss_pred EcCCCC-cc--ccccccCCC------CCCCEEecCCCCCCCCCCC---CCCCCcccEEeccCCcCCccccCccccCCCCc
Q 001979 426 NICYSL-VE--QLWQGVQNM------RHLKFIKLSHSVHLTKTPD---FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLK 493 (987)
Q Consensus 426 ~l~~~~-i~--~l~~~~~~l------~~L~~L~Ls~~~~~~~~~~---~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~ 493 (987)
++++|. ++ .+|..+..+ ++|++|+|++|.+. .+|. +.++++|++|++++|...+.+| .++.+++|+
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~ 356 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA 356 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence 999998 87 488888776 99999999999988 5665 9999999999999988776888 999999999
Q ss_pred EEeCcCCCCCccCCchhhhhhHHHhhhccc-cceeecCCcCCcccCccccCCC--CCCEEeccCCCCCcccCccCC----
Q 001979 494 VLNMKECIRIKSFPAEIEWASLEIVQNAKR-LLQLHLDQTSIEEIPPSIKFLS--RLTVLTLRDCKKLVSLPSSIS---- 566 (987)
Q Consensus 494 ~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~-L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~~~~l~~lp~~l~---- 566 (987)
+|++++|. +..+|..+ ..+++ |++|++++|.++.+|..+..++ +|++|++++|...+..|..+.
T Consensus 357 ~L~L~~N~-l~~lp~~l--------~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 357 SLNLAYNQ-ITEIPANF--------CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EEECCSSE-EEECCTTS--------EEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred EEECCCCc-cccccHhh--------hhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 99999984 55888876 78888 9999999999999999888765 999999999999999998888
Q ss_pred ---CCCCCCEEEecCCCCCCccccc-ccCCCCCcEeeCCCCCCCCCCccccCC--------CCCcEEEccCCCCCCCCcc
Q 001979 567 ---DLRSLKVLNLNGCSKLEEVPEN-LGHIASLENLDLGGTAIRRPPSTIVLL--------ENLKELSFHGCKGQRKSWS 634 (987)
Q Consensus 567 ---~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~L~~~~i~~~p~~i~~l--------~~L~~L~L~~~~~~~~~~~ 634 (987)
.+++|+.|++++|... .+|.. +..+++|+.|++++|.++.+|..+... ++|+.|++++|....
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~---- 502 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK---- 502 (636)
T ss_dssp SCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB----
T ss_pred ccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc----
Confidence 8889999999998765 66654 556999999999999999888765432 399999999987541
Q ss_pred cccccCCCCCCCCCCCccccCCCC--CCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCC------CCCCc-ccchhh
Q 001979 635 SLIWLPFYPRANRDSLGFFIPSLS--GLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLS------RNNFF-SLPASI 705 (987)
Q Consensus 635 ~~~~~~~l~~~~~~~~~~~~~~l~--~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~------~n~l~-~lp~~i 705 (987)
.+..+. .+++|+.|+|++|.+.. +|..+..+++|+.|+|+ +|++. .+|..+
T Consensus 503 ------------------lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 503 ------------------LSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp ------------------CCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred ------------------cChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence 223344 78999999999999975 89999999999999995 45555 789999
Q ss_pred hccCCCcEEecCCCcccccCCC-Ccccccccccccccc
Q 001979 706 NQLSRLETLNIDYCNRLKALPE-LPASIDGLFAHNCTS 742 (987)
Q Consensus 706 ~~l~~L~~L~L~~c~~L~~lp~-lp~sL~~L~~~~C~~ 742 (987)
..+++|+.|+|++|+. +.+|. +.++|+.|++.+|+-
T Consensus 563 ~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTT
T ss_pred hcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCC
Confidence 9999999999999765 88886 668999999998863
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=3e-28 Score=294.30 Aligned_cols=388 Identities=19% Similarity=0.167 Sum_probs=229.0
Q ss_pred ceeEEEecCCCCCeeeChhhhcCCCCCcEEEecCcccCCCCC---cCCcccceEEecCCCCCCC-CCCC-CCCCceEEEc
Q 001979 353 AVEGIICLQPSKGVKLNPESFSRMKNLRLLKIRDVCLRHGIE---YLPDELRLLKWHGYPLRSL-PSNF-QPERLFKLNI 427 (987)
Q Consensus 353 ~~~~i~l~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~---~l~~~Lr~L~~~~~~l~~l-p~~~-~~~~L~~L~l 427 (987)
.++.+.+... .-..+.+..|.++++|++|++++|.+..... .-...|++|++++|.+..+ |..| .+.+|++|++
T Consensus 33 ~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 33 STKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 3444444333 2345666788888889999988887654221 1225788888888888888 5566 7888889999
Q ss_pred CCCCccccc-cccCCCCCCCEEecCCCCCCC-CCCC-CCCCCcccEEeccCCcCCccccCccccCCCCc----EEeCcCC
Q 001979 428 CYSLVEQLW-QGVQNMRHLKFIKLSHSVHLT-KTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLK----VLNMKEC 500 (987)
Q Consensus 428 ~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~~~-~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~----~L~L~~c 500 (987)
++|.+..++ ..+.++++|++|+|++|.+.. .+|. +.++++|++|++++|......+..++.+++|+ +|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 888888876 678888888999998888765 4454 88888888888888766554455455444332 4555544
Q ss_pred CCCccCCchhh-h-------------------------------------------------------------------
Q 001979 501 IRIKSFPAEIE-W------------------------------------------------------------------- 512 (987)
Q Consensus 501 ~~l~~lp~~i~-~------------------------------------------------------------------- 512 (987)
. ++.+|.... .
T Consensus 192 ~-l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 192 P-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp C-CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred C-cceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 2 222221100 0
Q ss_pred -----hhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcc--
Q 001979 513 -----ASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEV-- 585 (987)
Q Consensus 513 -----~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-- 585 (987)
.....+..+++|+.|+++++.+..+| .+..+++|+.|++++|.. +.+|. + .+++|+.|++++|.....+
T Consensus 271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~~~ 346 (606)
T 3vq2_A 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISFKK 346 (606)
T ss_dssp CTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEECCC
T ss_pred cccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccchhh
Confidence 00001345567777777777777777 677777777777777766 66663 3 5666666666665333322
Q ss_pred ----------------------cccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCCC----Cccccccc
Q 001979 586 ----------------------PENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRK----SWSSLIWL 639 (987)
Q Consensus 586 ----------------------p~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~----~~~~~~~~ 639 (987)
|..+..+++|+.|++++|.+..+|..+..+++|+.|++++|..... .+..+..+
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 3444455555555555555555555555555555555555543222 11222223
Q ss_pred CCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCccc-chhhhccCCCcEEecCC
Q 001979 640 PFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSL-PASINQLSRLETLNIDY 718 (987)
Q Consensus 640 ~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~ 718 (987)
..+....+...+..+..+..+++|+.|++++|.+....+|..++.+++|+.|+|++|.++.+ |..+..+++|+.|+|++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 33334444444444445566666666666666654323555666666666666666666643 34556666666666666
Q ss_pred CcccccCCC---Cccccccccccccccccccc
Q 001979 719 CNRLKALPE---LPASIDGLFAHNCTSLIKLC 747 (987)
Q Consensus 719 c~~L~~lp~---lp~sL~~L~~~~C~~L~~l~ 747 (987)
|+.....|. -.++|+.|++.+|. ++.++
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p 537 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNR-IETSK 537 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSC-CCCEE
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCc-CcccC
Confidence 543322232 12455666665553 44443
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.1e-27 Score=289.55 Aligned_cols=241 Identities=22% Similarity=0.224 Sum_probs=146.4
Q ss_pred CCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCC
Q 001979 491 RLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRS 570 (987)
Q Consensus 491 ~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 570 (987)
+|+.|++++| .+..++... +..+++|++|++++|.++.+|..+..+++|++|++++|...+..|..+..+++
T Consensus 255 ~L~~L~l~~n-~l~~~~~~~-------~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 255 SVESINLQKH-YFFNISSNT-------FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp EEEEEECTTC-CCSSCCTTT-------TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred ceeEEEeecC-ccCccCHHH-------hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCc
Confidence 4566666665 333333321 25677777777777777777777777777777777777666665666677777
Q ss_pred CCEEEecCCCCCCcccc-cccCCCCCcEeeCCCCCCCCC---CccccCCCCCcEEEccCCCCCCCC---cccccccCCCC
Q 001979 571 LKVLNLNGCSKLEEVPE-NLGHIASLENLDLGGTAIRRP---PSTIVLLENLKELSFHGCKGQRKS---WSSLIWLPFYP 643 (987)
Q Consensus 571 L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~~---p~~i~~l~~L~~L~L~~~~~~~~~---~~~~~~~~~l~ 643 (987)
|+.|++++|.....+|. .+..+++|+.|++++|.+.+. +..+..+++|+.|++++|...... +.....+..+.
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 77777777765545544 366677777777777776654 455666777777777776543221 12222333334
Q ss_pred CCCCCCCcccc-CCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcc--cc--hhhhccCCCcEEecCC
Q 001979 644 RANRDSLGFFI-PSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFS--LP--ASINQLSRLETLNIDY 718 (987)
Q Consensus 644 ~~~~~~~~~~~-~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~--lp--~~i~~l~~L~~L~L~~ 718 (987)
...+...+..+ ..+..+++|+.|++++|.+. +..|..+..+++|++|+|++|.+.. +| ..+..+++|+.|++++
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCB-TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccC-CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 44443333333 23666777777777777764 3445666777777777777777663 22 4566777777777777
Q ss_pred CcccccCCC---Ccccccccccccc
Q 001979 719 CNRLKALPE---LPASIDGLFAHNC 740 (987)
Q Consensus 719 c~~L~~lp~---lp~sL~~L~~~~C 740 (987)
|......|. -.++|+.|++.++
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CccCccChhhhccccCCCEEECCCC
Confidence 643332232 1245666666655
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=4.4e-27 Score=284.16 Aligned_cols=348 Identities=15% Similarity=0.108 Sum_probs=236.6
Q ss_pred CCCcEEEecCcccCCCCC---cCCcccceEEecCCCCCCCCC-CC-CCCCceEEEcCCCCcccc-ccccCCCCCCCEEec
Q 001979 377 KNLRLLKIRDVCLRHGIE---YLPDELRLLKWHGYPLRSLPS-NF-QPERLFKLNICYSLVEQL-WQGVQNMRHLKFIKL 450 (987)
Q Consensus 377 ~~Lr~L~l~~~~l~~~~~---~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~L 450 (987)
++|+.|+++++.+..... .-.+.|++|+++++.+..++. .| .+.+|++|++++|.++.+ |..+.++++|++|+|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 789999999988765322 123589999999999999854 55 899999999999999988 788999999999999
Q ss_pred CCCCCCCCCC-CCCCCCcccEEeccCCcCCc-cccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhcccc----
Q 001979 451 SHSVHLTKTP-DFTGVPKLERLVLDGCTNLS-FVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRL---- 524 (987)
Q Consensus 451 s~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L---- 524 (987)
++|.+....+ .+.++++|++|++++|.... .+|..++.+++|++|++++|......|..+ +.+.+|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~~l 183 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL--------QFLRENPQVN 183 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT--------HHHHHCTTCC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh--------hhhhcccccc
Confidence 9999877764 49999999999999987765 678899999999999999985554444433 222222
Q ss_pred ceeecCCcCCcccCcc----------------------------------------------------------------
Q 001979 525 LQLHLDQTSIEEIPPS---------------------------------------------------------------- 540 (987)
Q Consensus 525 ~~L~L~~~~i~~lp~~---------------------------------------------------------------- 540 (987)
.+|++++|.++.+|..
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred ceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 2444444444444333
Q ss_pred -----------------ccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCC
Q 001979 541 -----------------IKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGT 603 (987)
Q Consensus 541 -----------------i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~ 603 (987)
+..+++|+.|++++|.. ..+| .+..+++|+.|++++|.. +.+|. + .+++|+.|++++|
T Consensus 264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n 338 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMN 338 (606)
T ss_dssp EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESC
T ss_pred hheeccccccccccccccccCCCCCEEEecCccc-hhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCC
Confidence 33345555555555543 4455 677888999999999987 88884 4 7888888888887
Q ss_pred CCCCCCccccCCCCCcEEEccCCCCCCC-----CcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCC
Q 001979 604 AIRRPPSTIVLLENLKELSFHGCKGQRK-----SWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAI 678 (987)
Q Consensus 604 ~i~~~p~~i~~l~~L~~L~L~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~l 678 (987)
...... .+..+++|+.|++++|..... .+.....+..+....+.. ...+..+..+++|+.|++++|.+.. ..
T Consensus 339 ~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~-~~ 415 (606)
T 3vq2_A 339 KGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKR-VT 415 (606)
T ss_dssp SSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEES-TT
T ss_pred cCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCCCccCC-cc
Confidence 433221 455677777777777764321 111222223333333332 2233556667777777777776653 22
Q ss_pred c-cccCCCCCCCEEeCCCCCCcc-cchhhhccCCCcEEecCCCccccc-CCCC---cccccccccccc
Q 001979 679 P-NDLGSLSALTNLTLSRNNFFS-LPASINQLSRLETLNIDYCNRLKA-LPEL---PASIDGLFAHNC 740 (987)
Q Consensus 679 p-~~l~~l~~L~~L~L~~n~l~~-lp~~i~~l~~L~~L~L~~c~~L~~-lp~l---p~sL~~L~~~~C 740 (987)
| ..+..+++|+.|++++|.+.. .|..+..+++|+.|++++|..... +|.. .++|+.|++.+|
T Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 3 456677777777777777664 455666777777777777653332 3332 356666666666
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=285.12 Aligned_cols=384 Identities=20% Similarity=0.201 Sum_probs=242.6
Q ss_pred eeEEEecCCCCCeeeChhhhcCCCCCcEEEecCcccCCCCC---cCCcccceEEecCCCCCCCCC-CC-CCCCceEEEcC
Q 001979 354 VEGIICLQPSKGVKLNPESFSRMKNLRLLKIRDVCLRHGIE---YLPDELRLLKWHGYPLRSLPS-NF-QPERLFKLNIC 428 (987)
Q Consensus 354 ~~~i~l~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~---~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~l~ 428 (987)
++.+.+... .-..+.+.+|.++++|++|++++|.+..... .-...|++|++.++.+..+|. .| .+.+|++|+++
T Consensus 30 l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 30 TKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp CCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 444443322 2334666788999999999999887654221 123589999999999888874 45 78899999999
Q ss_pred CCCcccccc-ccCCCCCCCEEecCCCCCCC-CCCC-CCCCCcccEEeccCCcCCccccCccccCCCC----cEEeCcCCC
Q 001979 429 YSLVEQLWQ-GVQNMRHLKFIKLSHSVHLT-KTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRL----KVLNMKECI 501 (987)
Q Consensus 429 ~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~-~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L----~~L~L~~c~ 501 (987)
+|.++.++. .+.++++|++|+|++|.+.. .+|. +.++++|++|++++|......+..++.+++| +.|++++|.
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence 999988865 68889999999999998776 3454 8889999999999887665556667777777 777777764
Q ss_pred CCccCCchhhh---------------------------------------------------------------------
Q 001979 502 RIKSFPAEIEW--------------------------------------------------------------------- 512 (987)
Q Consensus 502 ~l~~lp~~i~~--------------------------------------------------------------------- 512 (987)
.....|..+..
T Consensus 189 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 268 (570)
T 2z63_A 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268 (570)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence 32222211100
Q ss_pred ----hhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCccccc
Q 001979 513 ----ASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPEN 588 (987)
Q Consensus 513 ----~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~ 588 (987)
.....+..+++|+.|++++|.+..+|..+..+ +|++|++++|... .+|. ..+++|+.|++++|......+.
T Consensus 269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~- 343 (570)
T 2z63_A 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE- 343 (570)
T ss_dssp EEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-
T ss_pred hhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-
Confidence 00023456788999999999988899888888 8888888887655 5554 3556666666666654444333
Q ss_pred ccCCCCCcEeeCCCCCCCCC---CccccCCCCCcEEEccCCCCCCCC--cccccccCCCCCCCCCCCcccc-CCCCCCCc
Q 001979 589 LGHIASLENLDLGGTAIRRP---PSTIVLLENLKELSFHGCKGQRKS--WSSLIWLPFYPRANRDSLGFFI-PSLSGLHC 662 (987)
Q Consensus 589 l~~l~~L~~L~L~~~~i~~~---p~~i~~l~~L~~L~L~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~-~~l~~l~~ 662 (987)
..+++|+.|++++|.+... +..+..+++|+.|++++|...... +..+..+..+....+...+..+ ..+..+++
T Consensus 344 -~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 -VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp -CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred -ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 4556666666666665543 344555666666666665432211 1111222222222222222222 34566677
Q ss_pred ccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCc--ccchhhhccCCCcEEecCCCcccccCCC---Cccccccccc
Q 001979 663 LSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFF--SLPASINQLSRLETLNIDYCNRLKALPE---LPASIDGLFA 737 (987)
Q Consensus 663 L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~lp~---lp~sL~~L~~ 737 (987)
|+.|++++|.+. +..|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|......|. -.++|+.|++
T Consensus 423 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 423 LIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp CCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 777777777664 335556666777777777777665 4666667777777777777643332232 1245666666
Q ss_pred ccccccccc
Q 001979 738 HNCTSLIKL 746 (987)
Q Consensus 738 ~~C~~L~~l 746 (987)
.+| .++.+
T Consensus 502 ~~n-~l~~~ 509 (570)
T 2z63_A 502 ASN-QLKSV 509 (570)
T ss_dssp CSS-CCSCC
T ss_pred CCC-cCCCC
Confidence 665 34443
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=7.5e-27 Score=273.25 Aligned_cols=312 Identities=21% Similarity=0.202 Sum_probs=265.1
Q ss_pred cEEEecCcccCCCCCcCCcccceEEecCCCCCCCCC-CC-CCCCceEEEcCCCCcccc-ccccCCCCCCCEEecCCCCCC
Q 001979 380 RLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPS-NF-QPERLFKLNICYSLVEQL-WQGVQNMRHLKFIKLSHSVHL 456 (987)
Q Consensus 380 r~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~ 456 (987)
+.++.++..+..-+..+|..++.|++.++.+..++. .| .+.+|++|++++|.++.+ |..+.++++|++|+|++|.+.
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 345555555555556678899999999999998864 45 789999999999999987 778999999999999999887
Q ss_pred CCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCc
Q 001979 457 TKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIE 535 (987)
Q Consensus 457 ~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~ 535 (987)
...+. |.++++|++|+|++|......+..+..+++|++|++++|......|..+ ..+++|+.|++++|.++
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF--------SGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS--------TTCTTCCEEEEESCCCS
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc--------cCCCCCCEEECCCCcCc
Confidence 66665 8899999999999998877778889999999999999985544444444 78999999999999999
Q ss_pred ccCc-cccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCc-ccc
Q 001979 536 EIPP-SIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPS-TIV 613 (987)
Q Consensus 536 ~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~-~i~ 613 (987)
.+|. .+..+++|+.|++++|......+..+..+++|+.|++++|..+..+|.......+|+.|++++|.++.+|. .+.
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 245 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence 8886 48899999999999998887777789999999999999999999998888778899999999999999884 678
Q ss_pred CCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeC
Q 001979 614 LLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTL 693 (987)
Q Consensus 614 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L 693 (987)
.+++|+.|++++|.... .....+..+++|+.|+|++|.+.. ..|..+..+++|+.|+|
T Consensus 246 ~l~~L~~L~Ls~n~l~~---------------------~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 246 HLVYLRFLNLSYNPIST---------------------IEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp TCTTCCEEECCSSCCCE---------------------ECTTSCTTCTTCCEEECCSSCCSE-ECTTTBTTCTTCCEEEC
T ss_pred CccccCeeECCCCcCCc---------------------cChhhccccccCCEEECCCCccce-ECHHHhcCcccCCEEEC
Confidence 89999999999987432 122457788999999999999863 45778899999999999
Q ss_pred CCCCCcccch-hhhccCCCcEEecCCCcc
Q 001979 694 SRNNFFSLPA-SINQLSRLETLNIDYCNR 721 (987)
Q Consensus 694 ~~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 721 (987)
++|.++.+|. .+..+++|+.|+|++|+.
T Consensus 304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 304 SGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 9999998876 458899999999999763
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=274.38 Aligned_cols=337 Identities=17% Similarity=0.135 Sum_probs=185.5
Q ss_pred CCCcEEEecCcccCCCCC---cCCcccceEEecCCCCCCC-CCCC-CCCCceEEEcCCCCccccccccCCCCCCCEEecC
Q 001979 377 KNLRLLKIRDVCLRHGIE---YLPDELRLLKWHGYPLRSL-PSNF-QPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLS 451 (987)
Q Consensus 377 ~~Lr~L~l~~~~l~~~~~---~l~~~Lr~L~~~~~~l~~l-p~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls 451 (987)
++|+.|++++|.+..... .-.+.|++|++.+|.+..+ |..| .+.+|++|++++|.++.+|.. .+++|++|+|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 678888888887655321 1124788888888888877 4455 678888888888888888776 78888888888
Q ss_pred CCCCCC-CCC-CCCCCCcccEEeccCCcCCccccCccccCCCC--cEEeCcCCCC--CccCCchhhhhh-----------
Q 001979 452 HSVHLT-KTP-DFTGVPKLERLVLDGCTNLSFVHPSIGLLKRL--KVLNMKECIR--IKSFPAEIEWAS----------- 514 (987)
Q Consensus 452 ~~~~~~-~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L--~~L~L~~c~~--l~~lp~~i~~~~----------- 514 (987)
+|.+.. ..| .+.++++|++|++++|.... ..++.+++| ++|++++|.. ....|..+..-.
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred CCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 888766 344 47888888888888876543 346667777 8888888765 444444332100
Q ss_pred -------------------------------------HHHhhhcc---------------------------ccceeecC
Q 001979 515 -------------------------------------LEIVQNAK---------------------------RLLQLHLD 530 (987)
Q Consensus 515 -------------------------------------l~~~~~l~---------------------------~L~~L~L~ 530 (987)
+..+..++ +|++|+++
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 255 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEee
Confidence 00011111 33333444
Q ss_pred CcCCc-ccCccc-----cCCCCCCEEeccCCCCCcccC-ccCCCC---CCCCEEEecCCCCCCcccccccCCCCCcEeeC
Q 001979 531 QTSIE-EIPPSI-----KFLSRLTVLTLRDCKKLVSLP-SSISDL---RSLKVLNLNGCSKLEEVPENLGHIASLENLDL 600 (987)
Q Consensus 531 ~~~i~-~lp~~i-----~~l~~L~~L~L~~~~~l~~lp-~~l~~l---~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L 600 (987)
+|.+. .+|..+ ..+++|+.+++++|.. .+| ..+..+ .+|+.|++++|..... + ....+++|+.|++
T Consensus 256 ~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~L 331 (520)
T 2z7x_B 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-L-CPSKISPFLHLDF 331 (520)
T ss_dssp EEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSCCCCCEEEC
T ss_pred cccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-c-chhhCCcccEEEe
Confidence 44333 344443 4444444444444333 222 111111 2233333333321110 0 0145566666666
Q ss_pred CCCCCCC-CCccccCCCCCcEEEccCCCCCCC-----CcccccccCCCCCCCCCCCcccc-CCCCCCCcccEEecCCCCC
Q 001979 601 GGTAIRR-PPSTIVLLENLKELSFHGCKGQRK-----SWSSLIWLPFYPRANRDSLGFFI-PSLSGLHCLSRLDLGDCNL 673 (987)
Q Consensus 601 ~~~~i~~-~p~~i~~l~~L~~L~L~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~-~~l~~l~~L~~L~Ls~~~l 673 (987)
++|.+.+ .|..+..+++|+.|++++|..... .+..+..+..+....+...+..+ ..+..+++|+.|++++|.+
T Consensus 332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411 (520)
T ss_dssp CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence 6666664 455566666666666666654321 01112222223333333322122 2355566666666666666
Q ss_pred CCCCCccccCCCCCCCEEeCCCCCCcccchhhhccCCCcEEecCCCcccccCC
Q 001979 674 QEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCNRLKALP 726 (987)
Q Consensus 674 ~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 726 (987)
. +.+|..+. ++|+.|+|++|+++.+|..+..+++|+.|++++| .++.+|
T Consensus 412 ~-~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~ 460 (520)
T 2z7x_B 412 T-DTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVP 460 (520)
T ss_dssp C-GGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCC
T ss_pred C-cchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccC
Confidence 4 23333332 5666777777766666666666667777777665 344444
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2e-26 Score=257.82 Aligned_cols=302 Identities=21% Similarity=0.289 Sum_probs=140.9
Q ss_pred hcCCCCCcEEEecCcccCCC--CCcCCcccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEec
Q 001979 373 FSRMKNLRLLKIRDVCLRHG--IEYLPDELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKL 450 (987)
Q Consensus 373 f~~~~~Lr~L~l~~~~l~~~--~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L 450 (987)
+..+++|+.|+++++.+..- +.. .++|++|++.++.+..+|....+++|++|++++|.++.++ .+..+++|++|++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEY-LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGG-CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred chhcccccEEEEeCCccccchhhhh-cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 34566677777766554321 111 2345555555555555544224555555555555555543 3455555555555
Q ss_pred CCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecC
Q 001979 451 SHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLD 530 (987)
Q Consensus 451 s~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~ 530 (987)
++|.+... +.+..+++|++|++++|.....++. +..+++|++|++++|. +..++. +..+++|+.|+++
T Consensus 118 ~~n~i~~~-~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~---------~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 118 NEDNISDI-SPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP---------IANLTDLYSLSLN 185 (347)
T ss_dssp TTSCCCCC-GGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG---------GGGCTTCSEEECT
T ss_pred cCCcccCc-hhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh---------hccCCCCCEEEcc
Confidence 55544332 2255555555555555544443322 4555555555555542 222221 1445555555555
Q ss_pred CcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCc
Q 001979 531 QTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPS 610 (987)
Q Consensus 531 ~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~ 610 (987)
+|.+..++. +..+++|+.|++++|......+ +..+++|++|++++|... .++. +..+++|+.|++++|.++.+ .
T Consensus 186 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~-~ 259 (347)
T 4fmz_A 186 YNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISDI-N 259 (347)
T ss_dssp TSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCC-G
T ss_pred CCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccCCC-h
Confidence 555554444 4455555555555543332222 444455555555554322 2222 44455555555555544443 2
Q ss_pred cccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCE
Q 001979 611 TIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTN 690 (987)
Q Consensus 611 ~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~ 690 (987)
.+..+++|+.|++++|..... +.+..+++|+.|++++|.+. +..|..++.+++|+.
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~-----------------------~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDI-----------------------SVLNNLSQLNSLFLNNNQLG-NEDMEVIGGLTNLTT 315 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC-----------------------GGGGGCTTCSEEECCSSCCC-GGGHHHHHTCTTCSE
T ss_pred hHhcCCCcCEEEccCCccCCC-----------------------hhhcCCCCCCEEECcCCcCC-CcChhHhhccccCCE
Confidence 344444555555544432110 12333444555555555443 123333444455555
Q ss_pred EeCCCCCCcccchhhhccCCCcEEecCCC
Q 001979 691 LTLSRNNFFSLPASINQLSRLETLNIDYC 719 (987)
Q Consensus 691 L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 719 (987)
|+|++|.++.++. +..+++|+.|++++|
T Consensus 316 L~L~~n~l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 316 LFLSQNHITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp EECCSSSCCCCGG-GGGCTTCSEESSSCC
T ss_pred EEccCCccccccC-hhhhhccceeehhhh
Confidence 5555555444433 444455555555443
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=8.3e-27 Score=271.29 Aligned_cols=318 Identities=19% Similarity=0.186 Sum_probs=202.9
Q ss_pred CCCcEEEecCcccCCC----CCcCCcccceEEecCCCCC-CCC-CCC-CCCCceEEEcCCCCcccc-ccccCCCCCCCEE
Q 001979 377 KNLRLLKIRDVCLRHG----IEYLPDELRLLKWHGYPLR-SLP-SNF-QPERLFKLNICYSLVEQL-WQGVQNMRHLKFI 448 (987)
Q Consensus 377 ~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~~~~~~l~-~lp-~~~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L 448 (987)
++|++|+++++.+... +.. ..+|++|++.++.+. .+| ..| .+.+|++|++++|.+..+ |..+.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSS-CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhcc-CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 5677787777765432 112 246777777777765 443 334 677777777777777765 5677777777788
Q ss_pred ecCCCCCCCCCC-C--CCCCCcccEEeccCCcCCccccCc-cccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhc--c
Q 001979 449 KLSHSVHLTKTP-D--FTGVPKLERLVLDGCTNLSFVHPS-IGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNA--K 522 (987)
Q Consensus 449 ~Ls~~~~~~~~~-~--~~~l~~L~~L~L~~~~~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l--~ 522 (987)
+|++|.+....+ . +..+++|++|+|++|......|.. ++.+++|++|++++|......|..+ ..+ .
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l--------~~l~~~ 180 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL--------LNFQGK 180 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS--------GGGTTC
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh--------hccccc
Confidence 777777654322 2 677777777777777665555554 6777777777777775544444433 232 5
Q ss_pred ccceeecCCcCCcccCcc---------ccCCCCCCEEeccCCCCCcccCccCCC---CCCCCEEEecCCCCCCccc----
Q 001979 523 RLLQLHLDQTSIEEIPPS---------IKFLSRLTVLTLRDCKKLVSLPSSISD---LRSLKVLNLNGCSKLEEVP---- 586 (987)
Q Consensus 523 ~L~~L~L~~~~i~~lp~~---------i~~l~~L~~L~L~~~~~l~~lp~~l~~---l~~L~~L~l~~c~~l~~lp---- 586 (987)
+|+.|+++++.+..++.. +..+++|++|++++|...+..|..+.. .++|+.|++++|.......
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 677777777776655432 235567777788777766655554432 2566666666654332110
Q ss_pred ------cccc--CCCCCcEeeCCCCCCCCC-CccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCC
Q 001979 587 ------ENLG--HIASLENLDLGGTAIRRP-PSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSL 657 (987)
Q Consensus 587 ------~~l~--~l~~L~~L~L~~~~i~~~-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 657 (987)
..+. ..++|+.|++++|.+.+. |..+..+++|+.|++++|.... ..+..+
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------------------~~~~~~ 319 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK---------------------IDDNAF 319 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE---------------------ECTTTT
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc---------------------cChhHh
Confidence 0111 235778888888877754 5667777888888887776432 122346
Q ss_pred CCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCccc-chhhhccCCCcEEecCCCcccccCC
Q 001979 658 SGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSL-PASINQLSRLETLNIDYCNRLKALP 726 (987)
Q Consensus 658 ~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp 726 (987)
..+++|+.|+|++|.+. +..|..+..+++|++|+|++|.++.+ |..+..+++|+.|+|++| .++.+|
T Consensus 320 ~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 387 (455)
T 3v47_A 320 WGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVP 387 (455)
T ss_dssp TTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred cCcccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCC
Confidence 66777777777777774 33456677777777777777777755 556777777777777774 344444
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=4.7e-26 Score=272.02 Aligned_cols=332 Identities=17% Similarity=0.166 Sum_probs=193.8
Q ss_pred CCCcEEEecCcccCCCCC-c--CCcccceEEecCCCCCCCC-CCC-CCCCceEEEcCCCCccccccccCCCCCCCEEecC
Q 001979 377 KNLRLLKIRDVCLRHGIE-Y--LPDELRLLKWHGYPLRSLP-SNF-QPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLS 451 (987)
Q Consensus 377 ~~Lr~L~l~~~~l~~~~~-~--l~~~Lr~L~~~~~~l~~lp-~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls 451 (987)
++|+.|++++|.+..... . -.+.|++|++.+|.+..++ ..| .+.+|++|++++|.++.+|.. .+++|++|+|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 567777777776554321 1 1236777777777777763 344 567777777777777777666 67777777777
Q ss_pred CCCCCCCC-C-CCCCCCcccEEeccCCcCCccccCccccCCCC--cEEeCcCCCC--CccCCchhhhhh---H-------
Q 001979 452 HSVHLTKT-P-DFTGVPKLERLVLDGCTNLSFVHPSIGLLKRL--KVLNMKECIR--IKSFPAEIEWAS---L------- 515 (987)
Q Consensus 452 ~~~~~~~~-~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L--~~L~L~~c~~--l~~lp~~i~~~~---l------- 515 (987)
+|.+.... | .|.++++|++|++++|.... ..+..+++| ++|++++|.. ....|..+.... +
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 206 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSS
T ss_pred CCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCc
Confidence 77765532 2 37777777777777765433 234444555 7777777654 333333321100 0
Q ss_pred --------HHhhhcc-------------------------------------------------------ccceeecCCc
Q 001979 516 --------EIVQNAK-------------------------------------------------------RLLQLHLDQT 532 (987)
Q Consensus 516 --------~~~~~l~-------------------------------------------------------~L~~L~L~~~ 532 (987)
..+..++ +|++|++++|
T Consensus 207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 286 (562)
T 3a79_B 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286 (562)
T ss_dssp SCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred cchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEecc
Confidence 0001112 3444444444
Q ss_pred CCc-ccCccc-----cCCCC--------------------------CCEEeccCCCCCcccCccCCCCCCCCEEEecCCC
Q 001979 533 SIE-EIPPSI-----KFLSR--------------------------LTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCS 580 (987)
Q Consensus 533 ~i~-~lp~~i-----~~l~~--------------------------L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~ 580 (987)
.+. .+|..+ ..++. |+.|++++|...... ....+++|++|++++|.
T Consensus 287 ~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp EECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSC
T ss_pred EeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCc
Confidence 444 444433 22222 222222222211000 00345555666665555
Q ss_pred CCCcccccccCCCCCcEeeCCCCCCCCCC---ccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCcccc-CC
Q 001979 581 KLEEVPENLGHIASLENLDLGGTAIRRPP---STIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFI-PS 656 (987)
Q Consensus 581 ~l~~lp~~l~~l~~L~~L~L~~~~i~~~p---~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~ 656 (987)
.....|..++.+++|+.|++++|.+++++ ..+..+++|+.|++++|... +..+ ..
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~---------------------~~~~~~~ 423 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN---------------------SHAYDRT 423 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB---------------------SCCSSCC
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC---------------------CccChhh
Confidence 55545555555566666666665555443 33455556666666555432 2122 34
Q ss_pred CCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccchhhhccCCCcEEecCCCcccccCCCCcccccccc
Q 001979 657 LSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCNRLKALPELPASIDGLF 736 (987)
Q Consensus 657 l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~ 736 (987)
+..+++|+.|++++|.+. +.+|..+. ++|+.|+|++|+++.+|..+..+++|+.|+|++| .++.+|.. .
T Consensus 424 ~~~l~~L~~L~l~~n~l~-~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~-------~ 492 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLT-GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDG-------V 492 (562)
T ss_dssp CCCCTTCCEEECCSSCCC-GGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT-------S
T ss_pred hcCcccCCEEECCCCCCC-cchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCCHH-------H
Confidence 778899999999999985 34554443 7999999999999999999999999999999996 46666642 1
Q ss_pred ccccccccccc
Q 001979 737 AHNCTSLIKLC 747 (987)
Q Consensus 737 ~~~C~~L~~l~ 747 (987)
+..+++|+.+.
T Consensus 493 ~~~l~~L~~L~ 503 (562)
T 3a79_B 493 FDRLTSLQYIW 503 (562)
T ss_dssp TTTCTTCCCEE
T ss_pred HhcCCCCCEEE
Confidence 34556666665
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=2.7e-25 Score=272.29 Aligned_cols=367 Identities=18% Similarity=0.176 Sum_probs=248.1
Q ss_pred ceeEEEecCCCCCeeeChhhhcCCCCCcEEEecCcccCCCCCc---CCcccceEEecCCCCCCCCCC-C-CCCCceEEEc
Q 001979 353 AVEGIICLQPSKGVKLNPESFSRMKNLRLLKIRDVCLRHGIEY---LPDELRLLKWHGYPLRSLPSN-F-QPERLFKLNI 427 (987)
Q Consensus 353 ~~~~i~l~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~~---l~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~l 427 (987)
.++.+.+.... -..+.+..|.++++|++|+++++.+...... -...|++|++.++.+..+|.. | .+.+|++|++
T Consensus 26 ~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 26 NITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 45555544332 3345667899999999999998877653322 125799999999999999874 5 7899999999
Q ss_pred CCCCccccc-cccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCccccCccc--cCCCCcEEeCcCCCCC
Q 001979 428 CYSLVEQLW-QGVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIG--LLKRLKVLNMKECIRI 503 (987)
Q Consensus 428 ~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~--~l~~L~~L~L~~c~~l 503 (987)
++|.+..++ ..+.++++|++|+|++|.+....+. +.++++|++|++++|......+..++ .+++|++|++++|...
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 999998886 5788999999999999988777665 78899999999999865554444443 4578888888887443
Q ss_pred ccCCchhhh-hh---------------------------H---------------HHhhhcc--ccceeecCCcCCcccC
Q 001979 504 KSFPAEIEW-AS---------------------------L---------------EIVQNAK--RLLQLHLDQTSIEEIP 538 (987)
Q Consensus 504 ~~lp~~i~~-~~---------------------------l---------------~~~~~l~--~L~~L~L~~~~i~~lp 538 (987)
...|..+.. .. + ..+..++ +|+.|++++|.+..++
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 333322210 00 0 1123333 3777777777777554
Q ss_pred -ccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCC-----cccc----cccCCCCCcEeeCCCCCCCCC
Q 001979 539 -PSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLE-----EVPE----NLGHIASLENLDLGGTAIRRP 608 (987)
Q Consensus 539 -~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~-----~lp~----~l~~l~~L~~L~L~~~~i~~~ 608 (987)
..+..+++|++|++++|...+..|..+..+++|+.|++++|.... .+|. .+..+++|+.|++++|.+.++
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 457777778888887777777677777777788888777653321 3333 567788888888888888876
Q ss_pred C-ccccCCCCCcEEEccCCCCCCCCc-----ccc--cccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCcc
Q 001979 609 P-STIVLLENLKELSFHGCKGQRKSW-----SSL--IWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPN 680 (987)
Q Consensus 609 p-~~i~~l~~L~~L~L~~~~~~~~~~-----~~~--~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~ 680 (987)
+ ..+..+++|++|++++|....... ... ..+..+....+...+..+..+..+++|+.|++++|.+.....+.
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 4 457788888888888875321111 111 12223444445555555566778888888888888775322235
Q ss_pred ccCCCCCCCEEeCCCCCCcccc-hhhhccCCCcEEecCCCc
Q 001979 681 DLGSLSALTNLTLSRNNFFSLP-ASINQLSRLETLNIDYCN 720 (987)
Q Consensus 681 ~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~L~~c~ 720 (987)
.+.++++|++|++++|.+..++ ..+..+++|+.|++++|.
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred cccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 6777788888888888776543 455667777777777654
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=7.9e-27 Score=278.41 Aligned_cols=341 Identities=18% Similarity=0.249 Sum_probs=215.8
Q ss_pred ceeEEEecCCCCCeeeChhhhcCCCCCcEEEecCcccCCCCC---cCCcccceEEecCCCCCCCCCC-C-CCCCceEEEc
Q 001979 353 AVEGIICLQPSKGVKLNPESFSRMKNLRLLKIRDVCLRHGIE---YLPDELRLLKWHGYPLRSLPSN-F-QPERLFKLNI 427 (987)
Q Consensus 353 ~~~~i~l~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~---~l~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~l 427 (987)
.++.+.+.... -..+.+..|.++++|++|++++|.+..... .-...|++|++++|.+..+|.. | .+.+|++|++
T Consensus 27 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 27 AMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 34444443332 234556778888888888888887654221 1224788888888888888765 4 7888888888
Q ss_pred CCCCcccc--ccccCCCCCCCEEecCCCCCCCCCC--CCCCCCcccEEeccCCcCCccccCccccCC-------------
Q 001979 428 CYSLVEQL--WQGVQNMRHLKFIKLSHSVHLTKTP--DFTGVPKLERLVLDGCTNLSFVHPSIGLLK------------- 490 (987)
Q Consensus 428 ~~~~i~~l--~~~~~~l~~L~~L~Ls~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~------------- 490 (987)
++|.++.+ +..+.++++|++|++++|...+.+| .+.++++|++|++++|......|..++.++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 88888854 5678888888888888887555554 488888888888888876666666665544
Q ss_pred -----------CCcEEeCcCCCCCccC--Cchhh-----hh---------------hH-H--------------------
Q 001979 491 -----------RLKVLNMKECIRIKSF--PAEIE-----WA---------------SL-E-------------------- 516 (987)
Q Consensus 491 -----------~L~~L~L~~c~~l~~l--p~~i~-----~~---------------~l-~-------------------- 516 (987)
+|++|++++|...+.. |..+. +. .+ .
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 4445555444222100 00000 00 00 0
Q ss_pred ---------------------------------------HhhhccccceeecCCcCCcccCccc-cCCCCCCEEeccCCC
Q 001979 517 ---------------------------------------IVQNAKRLLQLHLDQTSIEEIPPSI-KFLSRLTVLTLRDCK 556 (987)
Q Consensus 517 ---------------------------------------~~~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~L~~~~ 556 (987)
......+|+.|++++|.+..+|..+ ..+++|++|++++|.
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~ 345 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc
Confidence 0111234555555555555555554 356666666666666
Q ss_pred CCcccC---ccCCCCCCCCEEEecCCCCCCccc---ccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCC
Q 001979 557 KLVSLP---SSISDLRSLKVLNLNGCSKLEEVP---ENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQR 630 (987)
Q Consensus 557 ~l~~lp---~~l~~l~~L~~L~l~~c~~l~~lp---~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~ 630 (987)
..+.+| ..++.+++|+.|++++|... .++ ..+..+++|+.|++++|.++.+|..+..+++|++|++++|....
T Consensus 346 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp CCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC
T ss_pred cccccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc
Confidence 555443 22455666666666665432 222 33566666666666666666666666666666666666665321
Q ss_pred CCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccchhhhccCC
Q 001979 631 KSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSR 710 (987)
Q Consensus 631 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~ 710 (987)
.+..+ .++|+.|++++|.+.. ++ ..+++|++|+|++|+++.+|. ...+++
T Consensus 425 ----------------------l~~~~--~~~L~~L~Ls~N~l~~--~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~ 474 (549)
T 2z81_A 425 ----------------------VKTCI--PQTLEVLDVSNNNLDS--FS---LFLPRLQELYISRNKLKTLPD-ASLFPV 474 (549)
T ss_dssp ----------------------CCTTS--CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSSCCC-GGGCTT
T ss_pred ----------------------ccchh--cCCceEEECCCCChhh--hc---ccCChhcEEECCCCccCcCCC-cccCcc
Confidence 11111 2589999999998864 32 578999999999999999996 567999
Q ss_pred CcEEecCCCcccccCC
Q 001979 711 LETLNIDYCNRLKALP 726 (987)
Q Consensus 711 L~~L~L~~c~~L~~lp 726 (987)
|+.|+|++|+ ++.+|
T Consensus 475 L~~L~Ls~N~-l~~~~ 489 (549)
T 2z81_A 475 LLVMKISRNQ-LKSVP 489 (549)
T ss_dssp CCEEECCSSC-CCCCC
T ss_pred CCEEecCCCc-cCCcC
Confidence 9999999964 55443
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.7e-26 Score=268.60 Aligned_cols=353 Identities=18% Similarity=0.174 Sum_probs=246.2
Q ss_pred EEecCcccCCCCCcCCcccceEEecCCCCCCC-CCCC-CCCCceEEEcCCCCcc-cc-ccccCCCCCCCEEecCCCCCCC
Q 001979 382 LKIRDVCLRHGIEYLPDELRLLKWHGYPLRSL-PSNF-QPERLFKLNICYSLVE-QL-WQGVQNMRHLKFIKLSHSVHLT 457 (987)
Q Consensus 382 L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~l-p~~~-~~~~L~~L~l~~~~i~-~l-~~~~~~l~~L~~L~Ls~~~~~~ 457 (987)
++.++..+..-+. +|+.+++|+++++.+..+ |..| .+.+|++|++++|.+. .+ +..+..+++|++|+|++|.+..
T Consensus 15 ~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 15 AICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp EECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred cCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc
Confidence 4444444433333 677888888888888877 4445 7788888888888775 44 4567888888888888888777
Q ss_pred CCCC-CCCCCcccEEeccCCcCCccccCc--cccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCC
Q 001979 458 KTPD-FTGVPKLERLVLDGCTNLSFVHPS--IGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSI 534 (987)
Q Consensus 458 ~~~~-~~~l~~L~~L~L~~~~~l~~~~~~--i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i 534 (987)
..|. |.++++|++|+|++|......+.. ++.+++|++|++++|......|..+ +..+++|++|++++|.+
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF-------FLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG-------GGGCTTCCEEECTTCCB
T ss_pred cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc-------cCCCCcccEEeCCCCcc
Confidence 6554 788888888888887765544444 7788888888888875544445542 36788888888888888
Q ss_pred ccc-CccccCC--CCCCEEeccCCCCCcccCcc--------CCCCCCCCEEEecCCCCCCcccccccCC---CCCcEeeC
Q 001979 535 EEI-PPSIKFL--SRLTVLTLRDCKKLVSLPSS--------ISDLRSLKVLNLNGCSKLEEVPENLGHI---ASLENLDL 600 (987)
Q Consensus 535 ~~l-p~~i~~l--~~L~~L~L~~~~~l~~lp~~--------l~~l~~L~~L~l~~c~~l~~lp~~l~~l---~~L~~L~L 600 (987)
..+ |..+..+ .+|+.|++++|.....-+.. +..+++|+.|++++|......|..+..+ ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 754 4445554 67888888887655433322 3356788888888887777666655443 78888888
Q ss_pred CCCCCCCCC-----------cccc--CCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEe
Q 001979 601 GGTAIRRPP-----------STIV--LLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLD 667 (987)
Q Consensus 601 ~~~~i~~~p-----------~~i~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~ 667 (987)
++|...... ..+. ..++|+.|++++|.... ..+..+..+++|+.|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~---------------------~~~~~~~~l~~L~~L~ 305 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA---------------------LLKSVFSHFTDLEQLT 305 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE---------------------ECTTTTTTCTTCCEEE
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccc---------------------cchhhcccCCCCCEEE
Confidence 877544321 1111 23688899988876432 2345678899999999
Q ss_pred cCCCCCCCCCCccccCCCCCCCEEeCCCCCCccc-chhhhccCCCcEEecCCCcccccCCC---Cccccccccccccccc
Q 001979 668 LGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSL-PASINQLSRLETLNIDYCNRLKALPE---LPASIDGLFAHNCTSL 743 (987)
Q Consensus 668 Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~---lp~sL~~L~~~~C~~L 743 (987)
+++|.+. +..|..+..+++|+.|+|++|.+..+ |..+..+++|+.|+|++|..-...|. -.++|+.|++.++ .+
T Consensus 306 Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l 383 (455)
T 3v47_A 306 LAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QL 383 (455)
T ss_dssp CTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred CCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-cc
Confidence 9999996 34567899999999999999999976 56789999999999999764333343 2367888888876 45
Q ss_pred ccccCCCcccC-CCCceEEecccc
Q 001979 744 IKLCSPSNITR-LTPRMFYLSNCF 766 (987)
Q Consensus 744 ~~l~~~~~l~~-~~~~~l~~~~C~ 766 (987)
+.++... +.. .....+++++++
T Consensus 384 ~~~~~~~-~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 384 KSVPDGI-FDRLTSLQKIWLHTNP 406 (455)
T ss_dssp SCCCTTT-TTTCTTCCEEECCSSC
T ss_pred ccCCHhH-hccCCcccEEEccCCC
Confidence 5554321 111 123467776654
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=9.9e-27 Score=277.57 Aligned_cols=175 Identities=16% Similarity=0.159 Sum_probs=146.3
Q ss_pred CCCcEEEecCcccCCCC-C--cCCcccceEEecCCCCCCCCC-CC-CCCCceEEEcCCCCccccccc-cCCCCCCCEEec
Q 001979 377 KNLRLLKIRDVCLRHGI-E--YLPDELRLLKWHGYPLRSLPS-NF-QPERLFKLNICYSLVEQLWQG-VQNMRHLKFIKL 450 (987)
Q Consensus 377 ~~Lr~L~l~~~~l~~~~-~--~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~L 450 (987)
++|+.|+++++.+.... . .-.+.|++|++.++.+..++. .| .+.+|++|++++|.+..++.. +..+++|++|+|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 68999999998865422 1 123589999999999998874 45 889999999999999988764 899999999999
Q ss_pred CCCCCCCC--CCCCCCCCcccEEeccCCcCCcccc-CccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhcccccee
Q 001979 451 SHSVHLTK--TPDFTGVPKLERLVLDGCTNLSFVH-PSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQL 527 (987)
Q Consensus 451 s~~~~~~~--~~~~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L 527 (987)
++|.+... .+.+.++++|++|++++|.....+| ..++.+++|++|++++|...+..|..+ ..+++|+.|
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l--------~~l~~L~~L 177 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL--------KSIRDIHHL 177 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT--------TTCSEEEEE
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh--------hccccCceE
Confidence 99988753 3458999999999999998777776 478999999999999997766677766 789999999
Q ss_pred ecCCcCCcccCccc-cCCCCCCEEeccCCCCCc
Q 001979 528 HLDQTSIEEIPPSI-KFLSRLTVLTLRDCKKLV 559 (987)
Q Consensus 528 ~L~~~~i~~lp~~i-~~l~~L~~L~L~~~~~l~ 559 (987)
+++.+.+..+|..+ ..+++|++|++++|...+
T Consensus 178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 99999998888764 579999999999987665
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=275.06 Aligned_cols=151 Identities=19% Similarity=0.138 Sum_probs=124.4
Q ss_pred cEEEecCcccCCCCCcCCcccceEEecCCCCCCCCC-CC-CCCCceEEEcCCCCcccc-ccccCCCCCCCEEecCCCCCC
Q 001979 380 RLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPS-NF-QPERLFKLNICYSLVEQL-WQGVQNMRHLKFIKLSHSVHL 456 (987)
Q Consensus 380 r~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~ 456 (987)
++|+++++.+..-+..+++.++.|+++++.+..++. .| .+.+|++|++++|.++.+ |..+.++++|++|+|++|.+.
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 578999998887666677899999999999999874 44 789999999999999988 678999999999999999887
Q ss_pred CCCCCCCCCCcccEEeccCCcCCc-cccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhcccc--ceeecCCcC
Q 001979 457 TKTPDFTGVPKLERLVLDGCTNLS-FVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRL--LQLHLDQTS 533 (987)
Q Consensus 457 ~~~~~~~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L--~~L~L~~~~ 533 (987)
.+|.. .+++|++|+|++|.... .+|..++.+++|++|++++|.... .. +..+++| +.|++++|.
T Consensus 83 -~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~--------~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 83 -KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS--------VLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp -EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG--------GGGGTTSCEEEEEEEECT
T ss_pred -ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh--------ccccccceeeEEEeeccc
Confidence 45555 89999999999988766 577899999999999999985433 11 3567777 999999998
Q ss_pred C--c-ccCccccC
Q 001979 534 I--E-EIPPSIKF 543 (987)
Q Consensus 534 i--~-~lp~~i~~ 543 (987)
+ . ..|..+..
T Consensus 150 l~~~~~~~~~l~~ 162 (520)
T 2z7x_B 150 TYGEKEDPEGLQD 162 (520)
T ss_dssp TTTSSCCTTTTTT
T ss_pred ccccccccccccc
Confidence 8 3 44444443
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=6.4e-26 Score=283.41 Aligned_cols=328 Identities=18% Similarity=0.176 Sum_probs=222.3
Q ss_pred CCCCCcEEEecCcccCCCC-Cc--CCcccceEEecCC-CCCCC-CCCC-CCCCceEEEcCCCCcccc-ccccCCCCCCCE
Q 001979 375 RMKNLRLLKIRDVCLRHGI-EY--LPDELRLLKWHGY-PLRSL-PSNF-QPERLFKLNICYSLVEQL-WQGVQNMRHLKF 447 (987)
Q Consensus 375 ~~~~Lr~L~l~~~~l~~~~-~~--l~~~Lr~L~~~~~-~l~~l-p~~~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~ 447 (987)
-.++|+.|++++|.+.... .. -..+|++|+++++ .+..+ |..| .+.+|++|+|++|.+..+ |..+.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 3578999999988765421 11 2257999999988 44556 5556 788999999999999887 778899999999
Q ss_pred EecCCCCCCCCCCC---CCCCCcccEEeccCCcCCcccc-CccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhc--
Q 001979 448 IKLSHSVHLTKTPD---FTGVPKLERLVLDGCTNLSFVH-PSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNA-- 521 (987)
Q Consensus 448 L~Ls~~~~~~~~~~---~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l-- 521 (987)
|+|++|.+....+. +.++++|++|+|++|......+ ..++.+++|++|++++|......|..+ ..+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l--------~~l~~ 173 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL--------EPLQG 173 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG--------HHHHH
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc--------ccccC
Confidence 99999988775543 8889999999999987665544 468899999999999986655555544 444
Q ss_pred cccceeecCCcCCc-ccCccccCCCC------CCEEeccCCCCCcccCccCCC---------------------------
Q 001979 522 KRLLQLHLDQTSIE-EIPPSIKFLSR------LTVLTLRDCKKLVSLPSSISD--------------------------- 567 (987)
Q Consensus 522 ~~L~~L~L~~~~i~-~lp~~i~~l~~------L~~L~L~~~~~l~~lp~~l~~--------------------------- 567 (987)
++|+.|+++.|.+. ..|..+..+++ |+.|++++|......|..+..
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 78999999999887 45666666655 999999998655544433221
Q ss_pred -----------CCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCC-CccccCCCCCcEEEccCCCCCCCCccc
Q 001979 568 -----------LRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRP-PSTIVLLENLKELSFHGCKGQRKSWSS 635 (987)
Q Consensus 568 -----------l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~-p~~i~~l~~L~~L~L~~~~~~~~~~~~ 635 (987)
.++|+.|++++|......|..+..+++|+.|++++|.+.++ |..+..+++|+.|++++|.....
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~---- 329 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL---- 329 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC----
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc----
Confidence 25677777777766665666777777777777777777755 45667777777777777764321
Q ss_pred ccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccchhhhccCCCcEEe
Q 001979 636 LIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLN 715 (987)
Q Consensus 636 ~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~ 715 (987)
.+..+..+++|+.|++++|.+.. ..+..+..+++|+.|+|++|.++.++. +++|+.|+
T Consensus 330 -----------------~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~ 387 (844)
T 3j0a_A 330 -----------------YSSNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIF 387 (844)
T ss_dssp -----------------CSCSCSSCTTCCEEECCSCCCCC-CCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEE
T ss_pred -----------------CHHHhcCCCCCCEEECCCCCCCc-cChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhc
Confidence 22345555566666666665532 223345555666666666665554442 45555555
Q ss_pred cCCCcccccCCCCccccccccc
Q 001979 716 IDYCNRLKALPELPASIDGLFA 737 (987)
Q Consensus 716 L~~c~~L~~lp~lp~sL~~L~~ 737 (987)
+++| .++.+|..+.+++.|++
T Consensus 388 l~~N-~l~~l~~~~~~l~~L~l 408 (844)
T 3j0a_A 388 LSGN-KLVTLPKINLTANLIHL 408 (844)
T ss_dssp EESC-CCCCCCCCCTTCCEEEC
T ss_pred cCCC-Ccccccccccccceeec
Confidence 5553 33444444444444443
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.2e-25 Score=251.55 Aligned_cols=283 Identities=18% Similarity=0.234 Sum_probs=241.8
Q ss_pred cccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCc
Q 001979 398 DELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCT 477 (987)
Q Consensus 398 ~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 477 (987)
+.++.|++.++.+..+|.-..+++|++|++++|.++.++. +..+++|++|++++|.+.. ++.+.++++|++|++++|.
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~l~~n~ 121 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-ISALQNLTNLRELYLNEDN 121 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEECTTSC
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-chHHcCCCcCCEEECcCCc
Confidence 5799999999999999875589999999999999999877 8999999999999997654 5779999999999999986
Q ss_pred CCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCC
Q 001979 478 NLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKK 557 (987)
Q Consensus 478 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~ 557 (987)
.. .++. +..+++|++|++++|.....++. + ..+++|++|++++|.+..++. +..+++|+.|++++|..
T Consensus 122 i~-~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~--------~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 122 IS-DISP-LANLTKMYSLNLGANHNLSDLSP-L--------SNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp CC-CCGG-GTTCTTCCEEECTTCTTCCCCGG-G--------TTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC
T ss_pred cc-Cchh-hccCCceeEEECCCCCCcccccc-h--------hhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc
Confidence 54 4444 88999999999999977776654 3 789999999999999998877 88999999999999875
Q ss_pred CcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCccccc
Q 001979 558 LVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLI 637 (987)
Q Consensus 558 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~ 637 (987)
.. ++. +..+++|+.|++++|..... +. +..+++|+.|++++|.++.++. +..+++|+.|++++|....
T Consensus 190 ~~-~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~------- 257 (347)
T 4fmz_A 190 ED-ISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD------- 257 (347)
T ss_dssp CC-CGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-------
T ss_pred cc-ccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-------
Confidence 44 443 78899999999999865544 33 8889999999999999998877 8899999999999986432
Q ss_pred ccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcc-cchhhhccCCCcEEec
Q 001979 638 WLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFS-LPASINQLSRLETLNI 716 (987)
Q Consensus 638 ~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~-lp~~i~~l~~L~~L~L 716 (987)
.+.+..+++|+.|++++|.+.+ + ..+..+++|+.|+|++|.+.. .|..+..+++|+.|++
T Consensus 258 ----------------~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 258 ----------------INAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp ----------------CGGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred ----------------ChhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 1346788999999999999875 4 458889999999999999985 4567899999999999
Q ss_pred CCCcccccCC
Q 001979 717 DYCNRLKALP 726 (987)
Q Consensus 717 ~~c~~L~~lp 726 (987)
++|+ ++.++
T Consensus 319 ~~n~-l~~~~ 327 (347)
T 4fmz_A 319 SQNH-ITDIR 327 (347)
T ss_dssp CSSS-CCCCG
T ss_pred cCCc-ccccc
Confidence 9986 55443
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=3.2e-26 Score=286.17 Aligned_cols=386 Identities=20% Similarity=0.191 Sum_probs=266.7
Q ss_pred ceeEEEecCCCCCeeeChhhhcCCCCCcEEEecCcccCCC-----CCcCCcccceEEecCCCCCCC-CCCC-CCCCceEE
Q 001979 353 AVEGIICLQPSKGVKLNPESFSRMKNLRLLKIRDVCLRHG-----IEYLPDELRLLKWHGYPLRSL-PSNF-QPERLFKL 425 (987)
Q Consensus 353 ~~~~i~l~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~-----~~~l~~~Lr~L~~~~~~l~~l-p~~~-~~~~L~~L 425 (987)
.++.+.+.... -..+.+..|.++++|++|++++|..... +..+ .+|++|++++|.+..+ |..| .+.+|++|
T Consensus 25 ~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 25 TTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL-PNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSC-TTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCC-CCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 44444444332 3345567788888888888888743322 2222 4788888888888777 5556 77888888
Q ss_pred EcCCCCccc-cccc--cCCCCCCCEEecCCCCCCCCCC--CCCCCCcccEEeccCCcCCccccCccc-------------
Q 001979 426 NICYSLVEQ-LWQG--VQNMRHLKFIKLSHSVHLTKTP--DFTGVPKLERLVLDGCTNLSFVHPSIG------------- 487 (987)
Q Consensus 426 ~l~~~~i~~-l~~~--~~~l~~L~~L~Ls~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~~~~~i~------------- 487 (987)
++++|.+.. ++.. +.++++|++|+|++|.+....+ .|.++++|++|+|++|......+..++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 888888875 4443 7788888888888888776654 378888888888888765443333333
Q ss_pred -------------cCCC------CcEEeCcCCCCCccCCchhhhh----------------------------hHHHhhh
Q 001979 488 -------------LLKR------LKVLNMKECIRIKSFPAEIEWA----------------------------SLEIVQN 520 (987)
Q Consensus 488 -------------~l~~------L~~L~L~~c~~l~~lp~~i~~~----------------------------~l~~~~~ 520 (987)
.+.+ |+.|++++|......|..+... ....+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 2222 6777777664433333222100 0001111
Q ss_pred --ccccceeecCCcCCccc-CccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcE
Q 001979 521 --AKRLLQLHLDQTSIEEI-PPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLEN 597 (987)
Q Consensus 521 --l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 597 (987)
.++|+.|++++|.+..+ |..+..+++|+.|++++|...+..|..+..+++|+.|++++|......|..+..+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 36899999999998865 556888999999999999888888888899999999999998876667888999999999
Q ss_pred eeCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCc-c-----------------------------------------
Q 001979 598 LDLGGTAIRRPPS-TIVLLENLKELSFHGCKGQRKSW-S----------------------------------------- 634 (987)
Q Consensus 598 L~L~~~~i~~~p~-~i~~l~~L~~L~L~~~~~~~~~~-~----------------------------------------- 634 (987)
|++++|.+..++. .+..+++|+.|++++|....... .
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~ 422 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL 422 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHH
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhh
Confidence 9999999887754 57788899999998886432110 0
Q ss_pred -cccccCCCCCCCCCCCcccc-CCCCCCCcccEEecCCCCCCC----CCCccccCCCCCCCEEeCCCCCCcccch-hhhc
Q 001979 635 -SLIWLPFYPRANRDSLGFFI-PSLSGLHCLSRLDLGDCNLQE----GAIPNDLGSLSALTNLTLSRNNFFSLPA-SINQ 707 (987)
Q Consensus 635 -~~~~~~~l~~~~~~~~~~~~-~~l~~l~~L~~L~Ls~~~l~~----~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~i~~ 707 (987)
.+..+..+....+...+... ..+..+++|+.|+|++|.+.. +..+..+.++++|+.|+|++|+++.+|. .+..
T Consensus 423 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp TTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred hcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc
Confidence 00011111122222222111 235567899999999998852 2345668889999999999999997765 4689
Q ss_pred cCCCcEEecCCCcccccCCC--Cccccccccccccc
Q 001979 708 LSRLETLNIDYCNRLKALPE--LPASIDGLFAHNCT 741 (987)
Q Consensus 708 l~~L~~L~L~~c~~L~~lp~--lp~sL~~L~~~~C~ 741 (987)
+++|+.|+|++| .++.+|. ++++|+.|+++++.
T Consensus 503 l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 503 LTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp CCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEEC
T ss_pred hhhhheeECCCC-CCCccChhhhhccccEEECCCCc
Confidence 999999999996 5777764 56889999988764
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=3.1e-24 Score=262.82 Aligned_cols=192 Identities=21% Similarity=0.159 Sum_probs=104.0
Q ss_pred CCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCC-CC-ccccCCCCCcEEEccCCCCCCCC---cccccccCCCCCC
Q 001979 571 LKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRR-PP-STIVLLENLKELSFHGCKGQRKS---WSSLIWLPFYPRA 645 (987)
Q Consensus 571 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-~p-~~i~~l~~L~~L~L~~~~~~~~~---~~~~~~~~~l~~~ 645 (987)
|+.|++++|......|..+..+++|+.|++++|.+.+ +| ..+..+++|++|++++|...... +.....+..+...
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 3344444443333344555566666666666666652 33 45556666666666666532211 1112222222222
Q ss_pred CCCCC--ccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccch---------hhhccCCCcEE
Q 001979 646 NRDSL--GFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPA---------SINQLSRLETL 714 (987)
Q Consensus 646 ~~~~~--~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~---------~i~~l~~L~~L 714 (987)
.+... +..+..+..+++|+.|++++|.+.. ..+..+..+++|+.|+|++|.++.++. .+..+++|+.|
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCc-CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 22221 3344567777888888888887753 334457778888888888888776532 25777888888
Q ss_pred ecCCCcccccCCC--C--cccccccccccccccccccCCCcccCCCCceEEeccc
Q 001979 715 NIDYCNRLKALPE--L--PASIDGLFAHNCTSLIKLCSPSNITRLTPRMFYLSNC 765 (987)
Q Consensus 715 ~L~~c~~L~~lp~--l--p~sL~~L~~~~C~~L~~l~~~~~l~~~~~~~l~~~~C 765 (987)
+|++| .++.+|. + .++|+.|++.++ .|+.++......-.....++++++
T Consensus 542 ~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 542 NLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ECCCC-CCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence 88875 4556653 1 245666666433 344444221101112345666666
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=5.2e-25 Score=256.46 Aligned_cols=273 Identities=21% Similarity=0.304 Sum_probs=132.0
Q ss_pred ccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcC
Q 001979 399 ELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTN 478 (987)
Q Consensus 399 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~ 478 (987)
.|++|+++++.+..+|....+.+|++|++++|.+..++. +.++++|++|+|++|.+... +.+..+++|++|++++|..
T Consensus 69 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~l 146 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTI 146 (466)
T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEEEEEEEE
T ss_pred CCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCC-hHHcCCCCCCEEECCCCcc
Confidence 455555555555555542245555555555555555544 55555555555555544332 2255555555555555432
Q ss_pred CccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCC
Q 001979 479 LSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKL 558 (987)
Q Consensus 479 l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l 558 (987)
. .++ .++.+++|++|++++ .+..++. +..+++|+.|++++|.+..++. +..+++|++|++++|...
T Consensus 147 ~-~~~-~~~~l~~L~~L~l~~--~~~~~~~---------~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 147 S-DIS-ALSGLTSLQQLSFGN--QVTDLKP---------LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQIS 212 (466)
T ss_dssp C-CCG-GGTTCTTCSEEEEEE--SCCCCGG---------GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCC
T ss_pred C-CCh-hhccCCcccEeecCC--cccCchh---------hccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccc
Confidence 2 222 355555555555542 1222221 2455555555555555554432 455555555555555443
Q ss_pred cccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccccc
Q 001979 559 VSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIW 638 (987)
Q Consensus 559 ~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~ 638 (987)
+..| ++.+++|+.|++++|... .+ ..+..+++|+.|++++|.+.+.+. +..+++|+.|++++|.....
T Consensus 213 ~~~~--~~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~------- 280 (466)
T 1o6v_A 213 DITP--LGILTNLDELSLNGNQLK-DI-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNI------- 280 (466)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCC-------
T ss_pred cccc--ccccCCCCEEECCCCCcc-cc-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcc-------
Confidence 3332 344555555555554322 22 234455555555555555555443 45555555555555542211
Q ss_pred cCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccchhhhccCCCcEEecCC
Q 001979 639 LPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDY 718 (987)
Q Consensus 639 ~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~ 718 (987)
+.+..+++|+.|++++|.+.. ++. +..+++|+.|+|++|+++.++. +..+++|+.|++++
T Consensus 281 ----------------~~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 281 ----------------SPLAGLTALTNLELNENQLED--ISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYN 340 (466)
T ss_dssp ----------------GGGTTCTTCSEEECCSSCCSC--CGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCS
T ss_pred ----------------ccccCCCccCeEEcCCCcccC--chh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCC
Confidence 113344455555555554432 221 4444555555555555444432 44455555555554
Q ss_pred C
Q 001979 719 C 719 (987)
Q Consensus 719 c 719 (987)
|
T Consensus 341 n 341 (466)
T 1o6v_A 341 N 341 (466)
T ss_dssp S
T ss_pred C
Confidence 4
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=2e-25 Score=267.62 Aligned_cols=309 Identities=19% Similarity=0.196 Sum_probs=196.0
Q ss_pred CCCcEEEecCcccCCCCC---cCCcccceEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccc-cccCCCCCCCEEec
Q 001979 377 KNLRLLKIRDVCLRHGIE---YLPDELRLLKWHGYPLRSLPSN-F-QPERLFKLNICYSLVEQLW-QGVQNMRHLKFIKL 450 (987)
Q Consensus 377 ~~Lr~L~l~~~~l~~~~~---~l~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~L 450 (987)
++++.|+++++.+..... .-.+.|+.|++.+|.+..++.. | .+.+|++|++++|.++.++ ..+..+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 468888888887654211 1234788888888888887643 4 6888888888888888775 57888888888888
Q ss_pred CCCCCCCCCC-CCCCCCcccEEeccCCcCCc-cccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhcccc----
Q 001979 451 SHSVHLTKTP-DFTGVPKLERLVLDGCTNLS-FVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRL---- 524 (987)
Q Consensus 451 s~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L---- 524 (987)
++|.+....+ .+.++++|++|++++|.... .+|..++.+++|++|++++|......|..+ +.+++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~~~ 179 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL--------RVLHQMPLLN 179 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG--------HHHHTCTTCC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc--------cchhccchhh
Confidence 8887766554 38888888888888876655 467888888888888888875443333333 566666
Q ss_pred ceeecCCcCCcccCccccCCCCCCEEeccCCCC-----------------------------------------------
Q 001979 525 LQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKK----------------------------------------------- 557 (987)
Q Consensus 525 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~----------------------------------------------- 557 (987)
+.|++++|.+..++.......+|+.|++++|..
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred hhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence 788888888887766544444788888777621
Q ss_pred -----------CcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCC
Q 001979 558 -----------LVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGC 626 (987)
Q Consensus 558 -----------l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~ 626 (987)
.+..|..+..+++|+.|++++|. +..+|..+..+ +|+.|++++|.+..+|. ..+++|+.|++++|
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n 335 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSN 335 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESC
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCC
Confidence 11223334445555555555543 23455555555 55666665555555544 34555666666555
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCC-CccccCCCCCCCEEeCCCCCCcccchhh
Q 001979 627 KGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGA-IPNDLGSLSALTNLTLSRNNFFSLPASI 705 (987)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~i 705 (987)
...... + ...+++|+.|++++|.+.... .|..+..+++|+.|++++|.+..+|..+
T Consensus 336 ~~~~~~----------------------~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 392 (570)
T 2z63_A 336 KGGNAF----------------------S-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392 (570)
T ss_dssp BSCCBC----------------------C-CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEE
T ss_pred cccccc----------------------c-cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccc
Confidence 432211 1 144556666666666553210 1344555566666666666666555555
Q ss_pred hccCCCcEEecCCCc
Q 001979 706 NQLSRLETLNIDYCN 720 (987)
Q Consensus 706 ~~l~~L~~L~L~~c~ 720 (987)
..+++|+.|++++|.
T Consensus 393 ~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 393 LGLEQLEHLDFQHSN 407 (570)
T ss_dssp ETCTTCCEEECTTSE
T ss_pred cccCCCCEEEccCCc
Confidence 556666666666544
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=5.3e-25 Score=262.89 Aligned_cols=352 Identities=15% Similarity=0.133 Sum_probs=243.9
Q ss_pred CCCCcEEEecCcccCCCCCcCCcccceEEecCCCCCCCCC-CC-CCCCceEEEcCCCCcccc-ccccCCCCCCCEEecCC
Q 001979 376 MKNLRLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPS-NF-QPERLFKLNICYSLVEQL-WQGVQNMRHLKFIKLSH 452 (987)
Q Consensus 376 ~~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~Ls~ 452 (987)
+...++++++++.+..-+..+|+.++.|++++|.+..+|. .| .+.+|++|++++|.++.+ |..+..+++|++|+|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3445899999999887666688999999999999999984 55 899999999999999998 66799999999999999
Q ss_pred CCCCCCCCCCCCCCcccEEeccCCcCCc-cccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhcccc--ceeec
Q 001979 453 SVHLTKTPDFTGVPKLERLVLDGCTNLS-FVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRL--LQLHL 529 (987)
Q Consensus 453 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L--~~L~L 529 (987)
|.+. .+|.. .+++|++|+|++|.... .+|..++.+++|++|++++|.... . .+ ..+++| +.|++
T Consensus 110 N~l~-~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~--~~--------~~l~~L~L~~L~L 176 (562)
T 3a79_B 110 NRLQ-NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-L--DL--------LPVAHLHLSCILL 176 (562)
T ss_dssp SCCC-EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-T--TT--------GGGTTSCEEEEEE
T ss_pred CcCC-ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-C--ch--------hhhhhceeeEEEe
Confidence 9977 45544 89999999999987655 345789999999999999985432 1 12 445555 99999
Q ss_pred CCcCC--c-ccCccccCC--------------------------C-----------------------------------
Q 001979 530 DQTSI--E-EIPPSIKFL--------------------------S----------------------------------- 545 (987)
Q Consensus 530 ~~~~i--~-~lp~~i~~l--------------------------~----------------------------------- 545 (987)
++|.+ . ..|..+..+ +
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 99988 3 333333332 2
Q ss_pred --------------------CCCEEeccCCCCCcccCccC-----CCCCC--------------------------CCEE
Q 001979 546 --------------------RLTVLTLRDCKKLVSLPSSI-----SDLRS--------------------------LKVL 574 (987)
Q Consensus 546 --------------------~L~~L~L~~~~~l~~lp~~l-----~~l~~--------------------------L~~L 574 (987)
+|++|++++|...+.+|..+ .++++ |+.|
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 45555555555545555544 33333 3333
Q ss_pred EecCCCCCCcccccccCCCCCcEeeCCCCCCCC-CCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccc
Q 001979 575 NLNGCSKLEEVPENLGHIASLENLDLGGTAIRR-PPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFF 653 (987)
Q Consensus 575 ~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 653 (987)
++++|..... + ....+++|+.|++++|.+++ .|..+..+++|+.|++++|..... ...
T Consensus 337 ~l~~n~~~~~-~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------------~~~ 395 (562)
T 3a79_B 337 SISDTPFIHM-V-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF-------------------FKV 395 (562)
T ss_dssp EEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBT-------------------THH
T ss_pred EccCCCcccc-c-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCc-------------------ccc
Confidence 3333322110 0 01456677777777777765 466667777777777776653311 112
Q ss_pred cCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCc-ccchhhhccCCCcEEecCCCcccccCCCC---c
Q 001979 654 IPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFF-SLPASINQLSRLETLNIDYCNRLKALPEL---P 729 (987)
Q Consensus 654 ~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p 729 (987)
+..+..+++|+.|++++|.+.....+..+..+++|+.|+|++|.++ .+|..+. ++|+.|++++| .++.+|.- .
T Consensus 396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l 472 (562)
T 3a79_B 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHL 472 (562)
T ss_dssp HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSS
T ss_pred hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCC
Confidence 2457889999999999999964233345888999999999999997 4454433 79999999997 67777752 3
Q ss_pred ccccccccccccccccccCCCcccCC-CCceEEecccc
Q 001979 730 ASIDGLFAHNCTSLIKLCSPSNITRL-TPRMFYLSNCF 766 (987)
Q Consensus 730 ~sL~~L~~~~C~~L~~l~~~~~l~~~-~~~~l~~~~C~ 766 (987)
++|+.|++.++. |+.++.. .+..+ ....+++++++
T Consensus 473 ~~L~~L~L~~N~-l~~l~~~-~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 473 QALQELNVASNQ-LKSVPDG-VFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCSEEECCSSC-CCCCCTT-STTTCTTCCCEECCSCC
T ss_pred CCCCEEECCCCC-CCCCCHH-HHhcCCCCCEEEecCCC
Confidence 678888887763 6665532 12221 22456666654
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=4.6e-25 Score=250.84 Aligned_cols=284 Identities=16% Similarity=0.185 Sum_probs=208.5
Q ss_pred cccceEEecCCCCCCCCCCC--CCCCceEEEcCCCCcccccc-ccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEec
Q 001979 398 DELRLLKWHGYPLRSLPSNF--QPERLFKLNICYSLVEQLWQ-GVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVL 473 (987)
Q Consensus 398 ~~Lr~L~~~~~~l~~lp~~~--~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L 473 (987)
.+++.|++.++.+..+|..+ .+++|++|++++|.++.++. .+..+++|++|+|++|.+....|. +.++++|++|+|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 35666666666777777653 56778888888888887754 777888888888888887776665 778888888888
Q ss_pred cCCcCCccccCc-cccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEec
Q 001979 474 DGCTNLSFVHPS-IGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTL 552 (987)
Q Consensus 474 ~~~~~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 552 (987)
++|... .+|.. ++.+++|++|++++|......|..+ ..+++|++|++++|.++.++ +..+++|+.|++
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l 193 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--------QATTSLQNLQLSSNRLTHVD--LSLIPSLFHANV 193 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--------SSCTTCCEEECCSSCCSBCC--GGGCTTCSEEEC
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhc--------cCCCCCCEEECCCCcCCccc--cccccccceeec
Confidence 886543 55544 5778888888888874433333333 67788888888888888764 567788888888
Q ss_pred cCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC
Q 001979 553 RDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKS 632 (987)
Q Consensus 553 ~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~ 632 (987)
++|.... +...++|+.|++++|.. ..+|.. ..++|+.|++++|.+++. ..+..+++|+.|++++|....
T Consensus 194 ~~n~l~~-----~~~~~~L~~L~l~~n~l-~~~~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~-- 262 (390)
T 3o6n_A 194 SYNLLST-----LAIPIAVEELDASHNSI-NVVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEK-- 262 (390)
T ss_dssp CSSCCSE-----EECCSSCSEEECCSSCC-CEEECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCE--
T ss_pred ccccccc-----cCCCCcceEEECCCCee-eecccc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCC--
Confidence 8875432 23346788888888754 334432 347888888888888876 467788888888888876432
Q ss_pred cccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccchhhhccCCCc
Q 001979 633 WSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLE 712 (987)
Q Consensus 633 ~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~ 712 (987)
..+..+..+++|+.|++++|.+.. +|..+..+++|+.|+|++|.+..+|..+..+++|+
T Consensus 263 -------------------~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 263 -------------------IMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 321 (390)
T ss_dssp -------------------EESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred -------------------cChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCcceecCccccccCcCC
Confidence 223456778889999999988864 67777788899999999999888888888889999
Q ss_pred EEecCCCcccccC
Q 001979 713 TLNIDYCNRLKAL 725 (987)
Q Consensus 713 ~L~L~~c~~L~~l 725 (987)
.|++++|+ ++.+
T Consensus 322 ~L~L~~N~-i~~~ 333 (390)
T 3o6n_A 322 NLYLDHNS-IVTL 333 (390)
T ss_dssp EEECCSSC-CCCC
T ss_pred EEECCCCc-ccee
Confidence 99998865 4444
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=6.4e-25 Score=255.67 Aligned_cols=302 Identities=18% Similarity=0.246 Sum_probs=250.4
Q ss_pred hhcCCCCCcEEEecCcccCCCCC-cCCcccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEec
Q 001979 372 SFSRMKNLRLLKIRDVCLRHGIE-YLPDELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKL 450 (987)
Q Consensus 372 ~f~~~~~Lr~L~l~~~~l~~~~~-~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L 450 (987)
.+..+++|++|+++++.+..... .-..+|++|++.++.+..++....+.+|++|++++|.++.++. +..+++|++|++
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLEL 141 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEE
T ss_pred chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEEC
Confidence 47889999999999998765332 1235899999999999999884489999999999999999875 899999999999
Q ss_pred CCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecC
Q 001979 451 SHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLD 530 (987)
Q Consensus 451 s~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~ 530 (987)
++|.+.. ++.+..+++|++|++++ ....++ .++.+++|++|++++|. +..++. +..+++|+.|+++
T Consensus 142 ~~n~l~~-~~~~~~l~~L~~L~l~~--~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~---------l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 142 SSNTISD-ISALSGLTSLQQLSFGN--QVTDLK-PLANLTTLERLDISSNK-VSDISV---------LAKLTNLESLIAT 207 (466)
T ss_dssp EEEEECC-CGGGTTCTTCSEEEEEE--SCCCCG-GGTTCTTCCEEECCSSC-CCCCGG---------GGGCTTCSEEECC
T ss_pred CCCccCC-ChhhccCCcccEeecCC--cccCch-hhccCCCCCEEECcCCc-CCCChh---------hccCCCCCEEEec
Confidence 9998654 56799999999999974 233333 38899999999999984 454442 3789999999999
Q ss_pred CcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCc
Q 001979 531 QTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPS 610 (987)
Q Consensus 531 ~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~ 610 (987)
+|.+..++. ++.+++|+.|++++|.... ++ .+..+++|+.|++++|......| +..+++|+.|++++|.+.+++.
T Consensus 208 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 282 (466)
T 1o6v_A 208 NNQISDITP-LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282 (466)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG
T ss_pred CCccccccc-ccccCCCCEEECCCCCccc-ch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc
Confidence 999998766 8889999999999987554 33 57889999999999987654433 8899999999999999998877
Q ss_pred cccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCE
Q 001979 611 TIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTN 690 (987)
Q Consensus 611 ~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~ 690 (987)
+..+++|+.|++++|..... +.+..+++|+.|++++|.+.+ ++. +..+++|+.
T Consensus 283 -~~~l~~L~~L~L~~n~l~~~-----------------------~~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~ 335 (466)
T 1o6v_A 283 -LAGLTALTNLELNENQLEDI-----------------------SPISNLKNLTYLTLYFNNISD--ISP-VSSLTKLQR 335 (466)
T ss_dssp -GTTCTTCSEEECCSSCCSCC-----------------------GGGGGCTTCSEEECCSSCCSC--CGG-GGGCTTCCE
T ss_pred -ccCCCccCeEEcCCCcccCc-----------------------hhhcCCCCCCEEECcCCcCCC--chh-hccCccCCE
Confidence 88999999999999874321 126678899999999999864 332 778999999
Q ss_pred EeCCCCCCcccchhhhccCCCcEEecCCCcc
Q 001979 691 LTLSRNNFFSLPASINQLSRLETLNIDYCNR 721 (987)
Q Consensus 691 L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 721 (987)
|++++|.++.++ .+..+++|+.|++++|+.
T Consensus 336 L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 336 LFFYNNKVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp EECCSSCCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred eECCCCccCCch-hhccCCCCCEEeCCCCcc
Confidence 999999999885 788999999999999763
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=5.8e-25 Score=263.99 Aligned_cols=280 Identities=16% Similarity=0.185 Sum_probs=207.7
Q ss_pred cccceEEecCCCCCCCCCCC--CCCCceEEEcCCCCcccccc-ccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEec
Q 001979 398 DELRLLKWHGYPLRSLPSNF--QPERLFKLNICYSLVEQLWQ-GVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVL 473 (987)
Q Consensus 398 ~~Lr~L~~~~~~l~~lp~~~--~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L 473 (987)
..++.|++.++.+..+|..+ .+++|++|++++|.++.++. .+..+++|++|+|++|.+...+|. |.++++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 35667777777777777654 56788888888888887754 778888888888888887776665 678888888888
Q ss_pred cCCcCCccccCc-cccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEec
Q 001979 474 DGCTNLSFVHPS-IGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTL 552 (987)
Q Consensus 474 ~~~~~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 552 (987)
++|... .+|.. ++.+++|++|+|++|......|..+ ..+++|++|++++|.+..++ +..+++|+.|++
T Consensus 131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l 199 (597)
T 3oja_B 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--------QATTSLQNLQLSSNRLTHVD--LSLIPSLFHANV 199 (597)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--------TTCTTCCEEECTTSCCSBCC--GGGCTTCSEEEC
T ss_pred eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhh--------hcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhc
Confidence 887544 44444 5788888888888875444444334 67888888888888888775 566788888888
Q ss_pred cCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC
Q 001979 553 RDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKS 632 (987)
Q Consensus 553 ~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~ 632 (987)
++|...+ +...++|+.|++++|.. ..+|..+ .++|+.|++++|.+++. ..+..+++|+.|++++|....
T Consensus 200 ~~n~l~~-----l~~~~~L~~L~ls~n~l-~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~-- 268 (597)
T 3oja_B 200 SYNLLST-----LAIPIAVEELDASHNSI-NVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEK-- 268 (597)
T ss_dssp CSSCCSE-----EECCTTCSEEECCSSCC-CEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCE--
T ss_pred ccCcccc-----ccCCchhheeeccCCcc-ccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCC--
Confidence 8875432 23456788888888754 3344332 36788888888888774 567788888888888876432
Q ss_pred cccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccchhhhccCCCc
Q 001979 633 WSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLE 712 (987)
Q Consensus 633 ~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~ 712 (987)
..+..+..+++|+.|+|++|.+.. +|..+..+++|+.|+|++|.++.+|..+..+++|+
T Consensus 269 -------------------~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 269 -------------------IMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327 (597)
T ss_dssp -------------------EESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred -------------------CCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccCCCCC
Confidence 223457778888888888888864 67777788888888888888888888888888888
Q ss_pred EEecCCCc
Q 001979 713 TLNIDYCN 720 (987)
Q Consensus 713 ~L~L~~c~ 720 (987)
.|+|++|+
T Consensus 328 ~L~L~~N~ 335 (597)
T 3oja_B 328 NLYLDHNS 335 (597)
T ss_dssp EEECCSSC
T ss_pred EEECCCCC
Confidence 88888865
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=2.6e-24 Score=248.20 Aligned_cols=289 Identities=24% Similarity=0.292 Sum_probs=171.9
Q ss_pred CCCcEEEecCcccCCCCCcCCcccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCC
Q 001979 377 KNLRLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHL 456 (987)
Q Consensus 377 ~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~ 456 (987)
++|+.|+++++.+.+ +...+..|+.|++.+|.+..+|.. +.+|++|++++|.++.+| .+.++++|++|++++|.+.
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred CCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCc
Confidence 567777777766655 334456677777777777666643 256777777777777766 4677777777777777655
Q ss_pred CCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcc
Q 001979 457 TKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEE 536 (987)
Q Consensus 457 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~ 536 (987)
. +|.. .++|++|++++|... .+| .++.+++|++|++++|. +..+|.. ..+|++|++++|.+..
T Consensus 167 ~-lp~~--~~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~-l~~l~~~-----------~~~L~~L~l~~n~l~~ 229 (454)
T 1jl5_A 167 K-LPDL--PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNS-LKKLPDL-----------PLSLESIVAGNNILEE 229 (454)
T ss_dssp C-CCCC--CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSC-CSSCCCC-----------CTTCCEEECCSSCCSS
T ss_pred c-cCCC--cccccEEECcCCcCC-cCc-cccCCCCCCEEECCCCc-CCcCCCC-----------cCcccEEECcCCcCCc
Confidence 4 3332 246777777776433 344 56677777777777763 3344431 2467777777777776
Q ss_pred cCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCC
Q 001979 537 IPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLE 616 (987)
Q Consensus 537 lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~ 616 (987)
+|. ++.+++|++|++++|... .+|. .+++|+.|++++|.. ..+|.. +++|+.|++++|.++++|.. .+
T Consensus 230 lp~-~~~l~~L~~L~l~~N~l~-~l~~---~~~~L~~L~l~~N~l-~~l~~~---~~~L~~L~ls~N~l~~l~~~---~~ 297 (454)
T 1jl5_A 230 LPE-LQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYL-TDLPEL---PQSLTFLDVSENIFSGLSEL---PP 297 (454)
T ss_dssp CCC-CTTCTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSCCSEESCC---CT
T ss_pred ccc-cCCCCCCCEEECCCCcCC-cccc---cccccCEEECCCCcc-cccCcc---cCcCCEEECcCCccCcccCc---CC
Confidence 663 667777777777766543 3443 235677777776653 335543 35677777777766654432 25
Q ss_pred CCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCC-CcccEEecCCCCCCCCCCccccCCCCCCCEEeCCC
Q 001979 617 NLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGL-HCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSR 695 (987)
Q Consensus 617 ~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l-~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~ 695 (987)
+|+.|++++|.... +..+ ++|+.|++++|.+.. +|.. +++|+.|++++
T Consensus 298 ~L~~L~l~~N~l~~--------------------------i~~~~~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~L~~ 346 (454)
T 1jl5_A 298 NLYYLNASSNEIRS--------------------------LCDLPPSLEELNVSNNKLIE--LPAL---PPRLERLIASF 346 (454)
T ss_dssp TCCEEECCSSCCSE--------------------------ECCCCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCS
T ss_pred cCCEEECcCCcCCc--------------------------ccCCcCcCCEEECCCCcccc--cccc---CCcCCEEECCC
Confidence 66777776665332 1112 356666666666643 4432 45666666666
Q ss_pred CCCcccchhhhccCCCcEEecCCCcccccCCCCccccc
Q 001979 696 NNFFSLPASINQLSRLETLNIDYCNRLKALPELPASID 733 (987)
Q Consensus 696 n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~ 733 (987)
|.++.+|. .+++|+.|++++| .++.+|.+|.++.
T Consensus 347 N~l~~lp~---~l~~L~~L~L~~N-~l~~l~~ip~~l~ 380 (454)
T 1jl5_A 347 NHLAEVPE---LPQNLKQLHVEYN-PLREFPDIPESVE 380 (454)
T ss_dssp SCCSCCCC---CCTTCCEEECCSS-CCSSCCCCCTTCC
T ss_pred Cccccccc---hhhhccEEECCCC-CCCcCCCChHHHH
Confidence 66666665 3566666666664 3444444444433
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=3.7e-24 Score=247.21 Aligned_cols=308 Identities=15% Similarity=0.133 Sum_probs=248.1
Q ss_pred hhcCCCCCcEEEecCcccCCCCCcC--CcccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEe
Q 001979 372 SFSRMKNLRLLKIRDVCLRHGIEYL--PDELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIK 449 (987)
Q Consensus 372 ~f~~~~~Lr~L~l~~~~l~~~~~~l--~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~ 449 (987)
.++++++|+.|+++++.+.+. ..+ .+.|++|++.++.+..+| ...+.+|++|++++|.++.++ +..+++|++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred ChhHcCCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 467789999999999887653 222 258999999999999987 337899999999999999985 88999999999
Q ss_pred cCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeec
Q 001979 450 LSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHL 529 (987)
Q Consensus 450 Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L 529 (987)
+++|.+.. ++ +..+++|++|++++|.... + .++.+++|++|++++|..++.++ + ..+++|+.|++
T Consensus 113 L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~~--~--------~~l~~L~~L~l 177 (457)
T 3bz5_A 113 CDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKLD--V--------TPQTQLTTLDC 177 (457)
T ss_dssp CCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCCC--C--------TTCTTCCEEEC
T ss_pred CCCCcCCe-ec-CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcccccc--c--------ccCCcCCEEEC
Confidence 99998776 34 8999999999999986544 4 38899999999999998777764 2 68899999999
Q ss_pred CCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCC
Q 001979 530 DQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPP 609 (987)
Q Consensus 530 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p 609 (987)
++|.++.+| +..+++|+.|++++|...+. .+..+++|+.|++++|.... +| ++.+++|+.|++++|.++++|
T Consensus 178 s~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 178 SFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred CCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 999999988 88999999999999876654 37889999999999987554 76 889999999999999999887
Q ss_pred ccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCcc--------c
Q 001979 610 STIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPN--------D 681 (987)
Q Consensus 610 ~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~--------~ 681 (987)
+..+++|+.|+++++.... +....+...+..+ +..+++|+.|++++|... +.+|. .
T Consensus 250 --~~~l~~L~~L~l~~n~L~~-----------L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l-~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQTDLLE-----------IDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL-YLLDCQAAGITELD 313 (457)
T ss_dssp --CTTCTTCCEEECTTCCCSC-----------CCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC-CEEECTTCCCSCCC
T ss_pred --HHHCCCCCEEeccCCCCCE-----------EECCCCccCCccc--ccccccCCEEECCCCccc-ceeccCCCcceEec
Confidence 5678889988888765321 2222333233332 467889999999999753 22332 2
Q ss_pred cCCCCCCCEEeCCCCCCcccchhhhccCCCcEEecCCCcccccC
Q 001979 682 LGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCNRLKAL 725 (987)
Q Consensus 682 l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l 725 (987)
+..+++|+.|++++|+++.++ +..+++|+.|++++| .++.+
T Consensus 314 l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSS-CCCBC
T ss_pred hhhcccCCEEECCCCcccccc--cccCCcCcEEECCCC-CCCCc
Confidence 566789999999999999885 889999999999985 45544
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=9.4e-25 Score=255.43 Aligned_cols=309 Identities=19% Similarity=0.183 Sum_probs=249.3
Q ss_pred cceEEecCCCCCCCCCCCCCCCceEEEcCCCCcccc-ccccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCc
Q 001979 400 LRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQL-WQGVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCT 477 (987)
Q Consensus 400 Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~ 477 (987)
-+.++..+..+..+|..+ +.++++|++++|.++.+ +..+.++++|++|+|++|.+....|. |.++++|++|+|++|.
T Consensus 13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 356788888999999876 56899999999999998 46899999999999999988877665 9999999999999976
Q ss_pred CCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCccc-CccccCCCCCCEEeccCCC
Q 001979 478 NLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEI-PPSIKFLSRLTVLTLRDCK 556 (987)
Q Consensus 478 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~ 556 (987)
.....+..++.+++|++|+|++|......|..+ ..+++|+.|++++|.+..+ |..+..+++|+.|++++|.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMF--------QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT--------TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHc--------cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 544434457899999999999986655555544 7899999999999999866 4578999999999999987
Q ss_pred CCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCC-CCCccccCCCCCcEEEccCCCCCCCCccc
Q 001979 557 KLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIR-RPPSTIVLLENLKELSFHGCKGQRKSWSS 635 (987)
Q Consensus 557 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~~p~~i~~l~~L~~L~L~~~~~~~~~~~~ 635 (987)
.....+..+..+++|+.|++++|......+..+..+++|+.|++++|... .+|.......+|+.|++++|.....
T Consensus 164 l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---- 239 (477)
T 2id5_A 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV---- 239 (477)
T ss_dssp CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC----
T ss_pred CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc----
Confidence 66555556889999999999998877666678899999999999997654 5566666677999999999864321
Q ss_pred ccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCccc-chhhhccCCCcEE
Q 001979 636 LIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSL-PASINQLSRLETL 714 (987)
Q Consensus 636 ~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L 714 (987)
....+..+++|+.|+|++|.+.. ..+..+..+++|+.|+|++|+++.+ |..+..+++|+.|
T Consensus 240 -----------------~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (477)
T 2id5_A 240 -----------------PYLAVRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301 (477)
T ss_dssp -----------------CHHHHTTCTTCCEEECCSSCCCE-ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE
T ss_pred -----------------CHHHhcCccccCeeECCCCcCCc-cChhhccccccCCEEECCCCccceECHHHhcCcccCCEE
Confidence 11246788999999999999863 3455688999999999999999976 6788999999999
Q ss_pred ecCCCcccccCCCCccccccccccccccccccc
Q 001979 715 NIDYCNRLKALPELPASIDGLFAHNCTSLIKLC 747 (987)
Q Consensus 715 ~L~~c~~L~~lp~lp~sL~~L~~~~C~~L~~l~ 747 (987)
+|++| .++.+|.- .+.+|++|+.+.
T Consensus 302 ~L~~N-~l~~~~~~-------~~~~l~~L~~L~ 326 (477)
T 2id5_A 302 NVSGN-QLTTLEES-------VFHSVGNLETLI 326 (477)
T ss_dssp ECCSS-CCSCCCGG-------GBSCGGGCCEEE
T ss_pred ECCCC-cCceeCHh-------HcCCCcccCEEE
Confidence 99996 45555431 123556666655
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=3e-24 Score=244.17 Aligned_cols=300 Identities=15% Similarity=0.177 Sum_probs=247.3
Q ss_pred CCCCCcEEEecCcccCCCCCc---CCcccceEEecCCCCCCCCC-CC-CCCCceEEEcCCCCccccc-cccCCCCCCCEE
Q 001979 375 RMKNLRLLKIRDVCLRHGIEY---LPDELRLLKWHGYPLRSLPS-NF-QPERLFKLNICYSLVEQLW-QGVQNMRHLKFI 448 (987)
Q Consensus 375 ~~~~Lr~L~l~~~~l~~~~~~---l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L 448 (987)
.+.+++.|+++++.+..-... -.++|++|++.++.+..+|. .| .+.+|++|++++|.+..++ ..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 468899999998876543222 13579999999999998875 45 7899999999999999885 458999999999
Q ss_pred ecCCCCCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhcccccee
Q 001979 449 KLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQL 527 (987)
Q Consensus 449 ~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L 527 (987)
+|++|.+....+. |.++++|++|++++|......+..++.+++|++|++++|. ++.++. ..+++|+.|
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~----------~~l~~L~~L 191 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL----------SLIPSLFHA 191 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCG----------GGCTTCSEE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCcccc----------cccccccee
Confidence 9999988766555 6899999999999987766667779999999999999984 444442 678999999
Q ss_pred ecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCC
Q 001979 528 HLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRR 607 (987)
Q Consensus 528 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~ 607 (987)
++++|.+..++ ..++|+.|++++|..... |.. ..++|+.|++++|.... . ..+..+++|+.|++++|.+.+
T Consensus 192 ~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 192 NVSYNLLSTLA----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTD-T-AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp ECCSSCCSEEE----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCE
T ss_pred ecccccccccC----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCcc-c-HHHcCCCCccEEECCCCcCCC
Confidence 99999988654 346899999999876543 433 35799999999987654 3 578899999999999999997
Q ss_pred C-CccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCC
Q 001979 608 P-PSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLS 686 (987)
Q Consensus 608 ~-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~ 686 (987)
. |..+..+++|+.|++++|.... .+..+..+++|+.|++++|.+.. +|..+..++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~----------------------~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~ 318 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVA----------------------LNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFD 318 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCE----------------------EECSSSCCTTCCEEECCSSCCCC--CGGGHHHHT
T ss_pred cChhHccccccCCEEECCCCcCcc----------------------cCcccCCCCCCCEEECCCCccee--cCccccccC
Confidence 6 7788999999999999987432 12335678899999999999964 888888899
Q ss_pred CCCEEeCCCCCCcccchhhhccCCCcEEecCCCc
Q 001979 687 ALTNLTLSRNNFFSLPASINQLSRLETLNIDYCN 720 (987)
Q Consensus 687 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 720 (987)
+|+.|+|++|.++.+| +..+++|+.|++++|+
T Consensus 319 ~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 319 RLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp TCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred cCCEEECCCCccceeC--chhhccCCEEEcCCCC
Confidence 9999999999999886 7789999999999976
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.6e-23 Score=241.59 Aligned_cols=296 Identities=21% Similarity=0.227 Sum_probs=156.6
Q ss_pred cceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCC
Q 001979 400 LRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNL 479 (987)
Q Consensus 400 Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l 479 (987)
++.|++.++.+..+|.. +++|++|++++|.++.+|.. +++|++|++++|.+.. ++.+ .++|++|++++|...
T Consensus 73 l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~-l~~~--~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSDL--PPLLEYLGVSNNQLE 144 (454)
T ss_dssp CSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCSC--CTTCCEEECCSSCCS
T ss_pred CCEEEecCCccccCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc-ccCC--CCCCCEEECcCCCCC
Confidence 34555555555555542 34555555555555554432 2455555555554332 1111 135555555554332
Q ss_pred ccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCc
Q 001979 480 SFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLV 559 (987)
Q Consensus 480 ~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~ 559 (987)
.+| .++.+++|++|++++| .++.+|.. ..+|++|++++|.++.+| .++.+++|++|++++|...+
T Consensus 145 -~lp-~~~~l~~L~~L~l~~N-~l~~lp~~-----------~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 145 -KLP-ELQNSSFLKIIDVDNN-SLKKLPDL-----------PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp -SCC-CCTTCTTCCEEECCSS-CCSCCCCC-----------CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred -CCc-ccCCCCCCCEEECCCC-cCcccCCC-----------cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc
Confidence 244 3555555555555554 23334431 124555555555555554 34555555555555544332
Q ss_pred ccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCccccccc
Q 001979 560 SLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWL 639 (987)
Q Consensus 560 ~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~ 639 (987)
+|.. .++|+.|++++|.. ..+|+ ++.+++|+.|++++|.++++|.. +++|+.|++++|..... +.....+
T Consensus 210 -l~~~---~~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l-~~~~~~L 279 (454)
T 1jl5_A 210 -LPDL---PLSLESIVAGNNIL-EELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDL-PELPQSL 279 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCC-SSCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCC-CCCCTTC
T ss_pred -CCCC---cCcccEEECcCCcC-Ccccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCccccc-CcccCcC
Confidence 3321 13455555555432 24442 44555555555555555544432 24455555555443221 1111111
Q ss_pred CCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccchhhhccCCCcEEecCCC
Q 001979 640 PFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYC 719 (987)
Q Consensus 640 ~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 719 (987)
..+....+...+ . +. ..++|+.|++++|.+.. ++. ..++|+.|++++|+++.+|.. +++|+.|++++|
T Consensus 280 ~~L~ls~N~l~~-l-~~--~~~~L~~L~l~~N~l~~--i~~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N 347 (454)
T 1jl5_A 280 TFLDVSENIFSG-L-SE--LPPNLYYLNASSNEIRS--LCD---LPPSLEELNVSNNKLIELPAL---PPRLERLIASFN 347 (454)
T ss_dssp CEEECCSSCCSE-E-SC--CCTTCCEEECCSSCCSE--ECC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS
T ss_pred CEEECcCCccCc-c-cC--cCCcCCEEECcCCcCCc--ccC---CcCcCCEEECCCCcccccccc---CCcCCEEECCCC
Confidence 112222222111 0 11 12689999999998864 332 125899999999999998865 689999999996
Q ss_pred cccccCCCCccccccccccccc
Q 001979 720 NRLKALPELPASIDGLFAHNCT 741 (987)
Q Consensus 720 ~~L~~lp~lp~sL~~L~~~~C~ 741 (987)
.++.+|..+++|+.|++.++.
T Consensus 348 -~l~~lp~~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 348 -HLAEVPELPQNLKQLHVEYNP 368 (454)
T ss_dssp -CCSCCCCCCTTCCEEECCSSC
T ss_pred -ccccccchhhhccEEECCCCC
Confidence 577898888899999998764
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=6.5e-24 Score=235.42 Aligned_cols=283 Identities=17% Similarity=0.258 Sum_probs=145.8
Q ss_pred ccceEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccc-ccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCC
Q 001979 399 ELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQ-GVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGC 476 (987)
Q Consensus 399 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~ 476 (987)
.++.+++.++.+..+|..+ ++++++|++++|.++.++. .+.++++|++|+|++|.+....|. |..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 3444455555555555443 2355555555555555543 455555555555555555544333 555555555555554
Q ss_pred cCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCc---ccCccccCCCCCCEEecc
Q 001979 477 TNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIE---EIPPSIKFLSRLTVLTLR 553 (987)
Q Consensus 477 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~ 553 (987)
. +..+|..+. ++|++|++++|. +..++.. .+..+++|+.|++++|.+. ..+..+..+++|++|+++
T Consensus 111 ~-l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 111 Q-LKELPEKMP--KTLQELRVHENE-ITKVRKS-------VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp C-CSBCCSSCC--TTCCEEECCSSC-CCBBCHH-------HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred c-CCccChhhc--ccccEEECCCCc-ccccCHh-------HhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 3 234444333 455555555552 2233321 1245555555555555554 233445555566666665
Q ss_pred CCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCC
Q 001979 554 DCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPS-TIVLLENLKELSFHGCKGQRKS 632 (987)
Q Consensus 554 ~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~-~i~~l~~L~~L~L~~~~~~~~~ 632 (987)
+|... .+|..+. ++|+.|++++|......|..+..+++|+.|++++|.+++++. .+..+++|+.|++++|...
T Consensus 180 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--- 253 (330)
T 1xku_A 180 DTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--- 253 (330)
T ss_dssp SSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS---
T ss_pred CCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc---
Confidence 55432 3443332 556666666655444445555566666666666666554432 4555666666666655422
Q ss_pred cccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCcc-ccC------CCCCCCEEeCCCCCCcc---cc
Q 001979 633 WSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPN-DLG------SLSALTNLTLSRNNFFS---LP 702 (987)
Q Consensus 633 ~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~-~l~------~l~~L~~L~L~~n~l~~---lp 702 (987)
..+..+..+++|+.|++++|.+.. ++. .+. ..++|+.|++++|.+.. .|
T Consensus 254 -------------------~lp~~l~~l~~L~~L~l~~N~i~~--~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~ 312 (330)
T 1xku_A 254 -------------------KVPGGLADHKYIQVVYLHNNNISA--IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312 (330)
T ss_dssp -------------------SCCTTTTTCSSCCEEECCSSCCCC--CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred -------------------cCChhhccCCCcCEEECCCCcCCc--cChhhcCCcccccccccccceEeecCcccccccCc
Confidence 112234555666666666666543 221 221 23567777777776652 34
Q ss_pred hhhhccCCCcEEecCCCc
Q 001979 703 ASINQLSRLETLNIDYCN 720 (987)
Q Consensus 703 ~~i~~l~~L~~L~L~~c~ 720 (987)
..+..+.+|+.++|++|+
T Consensus 313 ~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 313 STFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGGTTCCCGGGEEC----
T ss_pred cccccccceeEEEecccC
Confidence 566677777777777653
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5e-24 Score=255.88 Aligned_cols=300 Identities=15% Similarity=0.192 Sum_probs=247.6
Q ss_pred CCCCCcEEEecCcccCCCCCcC---CcccceEEecCCCCCCCCC-CC-CCCCceEEEcCCCCcccccc-ccCCCCCCCEE
Q 001979 375 RMKNLRLLKIRDVCLRHGIEYL---PDELRLLKWHGYPLRSLPS-NF-QPERLFKLNICYSLVEQLWQ-GVQNMRHLKFI 448 (987)
Q Consensus 375 ~~~~Lr~L~l~~~~l~~~~~~l---~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L 448 (987)
.+.+++.|+++++.+..-+... .+.|++|++.++.+..+|. .| .+.+|++|++++|.+..++. .+..+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 3578899999988765433221 2579999999999998875 45 88999999999999998865 56899999999
Q ss_pred ecCCCCCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhcccccee
Q 001979 449 KLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQL 527 (987)
Q Consensus 449 ~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L 527 (987)
+|++|.+...++. |.++++|++|+|++|......|..++.+++|++|++++|. +..++. +.+++|+.|
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~----------~~l~~L~~L 197 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL----------SLIPSLFHA 197 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCG----------GGCTTCSEE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcCh----------hhhhhhhhh
Confidence 9999988876666 6899999999999998777777789999999999999984 444442 678899999
Q ss_pred ecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCC
Q 001979 528 HLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRR 607 (987)
Q Consensus 528 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~ 607 (987)
++++|.+..++ ..++|+.|++++|.... +|..+ .++|+.|++++|.... +..+..+++|+.|++++|.+.+
T Consensus 198 ~l~~n~l~~l~----~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 198 NVSYNLLSTLA----IPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp ECCSSCCSEEE----CCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred hcccCcccccc----CCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence 99999887653 45689999999987543 33322 3689999999987654 4678899999999999999987
Q ss_pred C-CccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCC
Q 001979 608 P-PSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLS 686 (987)
Q Consensus 608 ~-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~ 686 (987)
+ |..+..+++|+.|+|++|.... .+..+..+++|+.|+|++|.+.. +|..+..++
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~----------------------l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~ 324 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVA----------------------LNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFD 324 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCE----------------------EECSSSCCTTCCEEECCSSCCCC--CGGGHHHHT
T ss_pred CCHHHhcCccCCCEEECCCCCCCC----------------------CCcccccCCCCcEEECCCCCCCc--cCcccccCC
Confidence 6 7789999999999999987432 23345668899999999999964 888888999
Q ss_pred CCCEEeCCCCCCcccchhhhccCCCcEEecCCCc
Q 001979 687 ALTNLTLSRNNFFSLPASINQLSRLETLNIDYCN 720 (987)
Q Consensus 687 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 720 (987)
+|+.|+|++|.++.+| +..+++|+.|+|++|+
T Consensus 325 ~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 325 RLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCC
Confidence 9999999999999886 7788999999999986
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.4e-23 Score=240.40 Aligned_cols=298 Identities=15% Similarity=0.094 Sum_probs=235.8
Q ss_pred hhcCCCCCcEEEecCcccCCCCCcCCcccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecC
Q 001979 372 SFSRMKNLRLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLS 451 (987)
Q Consensus 372 ~f~~~~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls 451 (987)
.|..+++|++|++++|.+.+-...-...|++|++.+|.+..+| -..+.+|++|++++|.++.++ +..+++|++|+++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCA 135 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECT
T ss_pred hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECC
Confidence 6899999999999999887633233468999999999999987 338899999999999999986 8899999999999
Q ss_pred CCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCC
Q 001979 452 HSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQ 531 (987)
Q Consensus 452 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~ 531 (987)
+|.+... ++..+++|++|++++|..++.+ .++.+++|++|++++| .++.+| + ..+++|+.|++++
T Consensus 136 ~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~--l--------~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 136 RNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD--V--------SQNKLLNRLNCDT 200 (457)
T ss_dssp TSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC--C--------TTCTTCCEEECCS
T ss_pred CCcccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec--c--------ccCCCCCEEECcC
Confidence 9987764 4889999999999999877776 5889999999999998 555566 3 6889999999999
Q ss_pred cCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCC--
Q 001979 532 TSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPP-- 609 (987)
Q Consensus 532 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p-- 609 (987)
|.++.++ +..+++|++|++++|...+ +| +..+++|+.|++++|.... +| ++.+++|+.|+++++.+..+.
T Consensus 201 N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~-~~--~~~l~~L~~L~l~~n~L~~L~l~ 272 (457)
T 3bz5_A 201 NNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE-LD--VSTLSKLTTLHCIQTDLLEIDLT 272 (457)
T ss_dssp SCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECTTCCCSCCCCT
T ss_pred CcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-cC--HHHCCCCCEEeccCCCCCEEECC
Confidence 9999884 8899999999999998766 66 8899999999999987654 33 445666666665555544331
Q ss_pred -------ccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCcccc
Q 001979 610 -------STIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDL 682 (987)
Q Consensus 610 -------~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l 682 (987)
-.+..+++|+.|++++|......+.....+. .-.+.++++|+.|++++|.+.. ++ +
T Consensus 273 ~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~-------------~L~l~~~~~L~~L~L~~N~l~~--l~--l 335 (457)
T 3bz5_A 273 HNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-------------ELDLSQNPKLVYLYLNNTELTE--LD--V 335 (457)
T ss_dssp TCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCS-------------CCCCTTCTTCCEEECTTCCCSC--CC--C
T ss_pred CCccCCcccccccccCCEEECCCCcccceeccCCCcce-------------EechhhcccCCEEECCCCcccc--cc--c
Confidence 1145678999999999985544322111111 1126677899999999999975 43 8
Q ss_pred CCCCCCCEEeCCCCCCcccchhhhccCCCcEEecCCC
Q 001979 683 GSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYC 719 (987)
Q Consensus 683 ~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 719 (987)
+.+++|+.|++++|+++.++ .|..|++++|
T Consensus 336 ~~l~~L~~L~l~~N~l~~l~-------~L~~L~l~~n 365 (457)
T 3bz5_A 336 SHNTKLKSLSCVNAHIQDFS-------SVGKIPALNN 365 (457)
T ss_dssp TTCTTCSEEECCSSCCCBCT-------TGGGSSGGGT
T ss_pred ccCCcCcEEECCCCCCCCcc-------ccccccccCC
Confidence 89999999999999998753 4555555553
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=1.5e-23 Score=232.72 Aligned_cols=282 Identities=19% Similarity=0.266 Sum_probs=127.6
Q ss_pred cceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccc-cccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCc
Q 001979 400 LRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLW-QGVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCT 477 (987)
Q Consensus 400 Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~ 477 (987)
++.+++.++.+..+|..+ +++|++|++++|.+..++ ..+.++++|++|+|++|.+....|. |.++++|++|++++|.
T Consensus 35 l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred CCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 344444444444444433 234444444444444442 2344444444444444444433332 4444444444444432
Q ss_pred CCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCc---ccCccccCCCCCCEEeccC
Q 001979 478 NLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIE---EIPPSIKFLSRLTVLTLRD 554 (987)
Q Consensus 478 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~ 554 (987)
. ..+|..+. ++|++|++++| .++.+|... +..+++|+.|++++|.++ ..|..+..+ +|++|++++
T Consensus 114 l-~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 114 L-VEIPPNLP--SSLVELRIHDN-RIRKVPKGV-------FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp C-CSCCSSCC--TTCCEEECCSS-CCCCCCSGG-------GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred C-CccCcccc--ccCCEEECCCC-ccCccCHhH-------hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 2 23333332 44455555444 222333221 134444555555554443 223333334 455555554
Q ss_pred CCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCc
Q 001979 555 CKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPS-TIVLLENLKELSFHGCKGQRKSW 633 (987)
Q Consensus 555 ~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~-~i~~l~~L~~L~L~~~~~~~~~~ 633 (987)
|... .+|..+. ++|+.|++++|......+..+..+++|+.|++++|.+.+++. .+..+++|+.|++++|...
T Consensus 182 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---- 254 (332)
T 2ft3_A 182 AKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS---- 254 (332)
T ss_dssp SBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC----
T ss_pred CCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe----
Confidence 4322 2333322 445555555544433333445555555555555555554432 4455555555555554321
Q ss_pred ccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCC------CCCCCEEeCCCCCCc---ccchh
Q 001979 634 SSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGS------LSALTNLTLSRNNFF---SLPAS 704 (987)
Q Consensus 634 ~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~------l~~L~~L~L~~n~l~---~lp~~ 704 (987)
..+..+..+++|+.|++++|.+.. ..+..+.. .++|+.|++++|.+. ..|..
T Consensus 255 ------------------~lp~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~ 315 (332)
T 2ft3_A 255 ------------------RVPAGLPDLKLLQVVYLHTNNITK-VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315 (332)
T ss_dssp ------------------BCCTTGGGCTTCCEEECCSSCCCB-CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred ------------------ecChhhhcCccCCEEECCCCCCCc-cChhHccccccccccccccceEeecCcccccccCccc
Confidence 112223444555555555555532 11112221 356777777777665 23455
Q ss_pred hhccCCCcEEecCCCc
Q 001979 705 INQLSRLETLNIDYCN 720 (987)
Q Consensus 705 i~~l~~L~~L~L~~c~ 720 (987)
+..+++|+.|++++|+
T Consensus 316 ~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GTTBCCSTTEEC----
T ss_pred ccccchhhhhhccccc
Confidence 6777777777777764
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=7.1e-23 Score=227.09 Aligned_cols=294 Identities=16% Similarity=0.145 Sum_probs=179.4
Q ss_pred CCCcEEEecCcccCCCCCcCCcccceEEecCCCCCCCCC-CC-CCCCceEEEcCCCCcccc-ccccCCCCCCCEEecCCC
Q 001979 377 KNLRLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPS-NF-QPERLFKLNICYSLVEQL-WQGVQNMRHLKFIKLSHS 453 (987)
Q Consensus 377 ~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~Ls~~ 453 (987)
.+++.++++++.+..-+..+++.++.|++.++.+..+|. .| .+.+|++|++++|.++.+ |..+..+++|++|+|++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 456777776666555445556677777777777777665 33 567777777777777766 566777777777777777
Q ss_pred CCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCc--cCCchhhhhhHHHhhhccccceeecCC
Q 001979 454 VHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIK--SFPAEIEWASLEIVQNAKRLLQLHLDQ 531 (987)
Q Consensus 454 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~--~lp~~i~~~~l~~~~~l~~L~~L~L~~ 531 (987)
.+......+. ++|++|++++|......+..+..+++|++|++++|.... ..+..+ ..+++|++|++++
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------~~l~~L~~L~l~~ 180 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF--------QGMKKLSYIRIAD 180 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG--------GGCTTCCEEECCS
T ss_pred cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc--------cCCCCcCEEECCC
Confidence 6553332232 677777777765544444456677777777777764321 223322 5667777777777
Q ss_pred cCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCcc
Q 001979 532 TSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPST 611 (987)
Q Consensus 532 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~ 611 (987)
|.++.+|..+. ++|++|++++|...+..|..+..+++|+.|++++|......+..+..+++|+.|++++|.+..+|..
T Consensus 181 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 258 (330)
T 1xku_A 181 TNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258 (330)
T ss_dssp SCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT
T ss_pred CccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh
Confidence 77777766543 6777777777766555566677777777777777665554455666677777777777777777777
Q ss_pred ccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCC-CccccCCCCCCCE
Q 001979 612 IVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGA-IPNDLGSLSALTN 690 (987)
Q Consensus 612 i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~-lp~~l~~l~~L~~ 690 (987)
+..+++|+.|++++|.........+.. .........|+.|++++|.+.... .|..+.++.+|+.
T Consensus 259 l~~l~~L~~L~l~~N~i~~~~~~~f~~---------------~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAIGSNDFCP---------------PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTSSSC---------------SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred hccCCCcCEEECCCCcCCccChhhcCC---------------cccccccccccceEeecCcccccccCccccccccceeE
Confidence 777777777777776543221100000 000112356677777777664322 3455666777777
Q ss_pred EeCCCCC
Q 001979 691 LTLSRNN 697 (987)
Q Consensus 691 L~L~~n~ 697 (987)
++|++|+
T Consensus 324 l~L~~N~ 330 (330)
T 1xku_A 324 VQLGNYK 330 (330)
T ss_dssp EEC----
T ss_pred EEecccC
Confidence 7776663
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1.3e-22 Score=246.46 Aligned_cols=361 Identities=20% Similarity=0.167 Sum_probs=209.5
Q ss_pred CCCcEEEecCcccCCC----CCcCCcccceEEecCCCCCCCCCC-C-CCCCceEEEcCCCCcccccc-ccCCCCCCCEEe
Q 001979 377 KNLRLLKIRDVCLRHG----IEYLPDELRLLKWHGYPLRSLPSN-F-QPERLFKLNICYSLVEQLWQ-GVQNMRHLKFIK 449 (987)
Q Consensus 377 ~~Lr~L~l~~~~l~~~----~~~l~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~ 449 (987)
.+++.|++++|.+..- +.. .++|++|++++|.+..+|.. | .+.+|++|+|++|.++.+|. .+.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~-l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhC-CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 4789999999887542 222 24799999999999998764 5 78999999999999999875 578999999999
Q ss_pred cCCCCCCCCCCC-CCCCCcccEEeccCCcCCc-cccCccccCCCCcEEeCcCCCCCccCCchhhh-hhH-----------
Q 001979 450 LSHSVHLTKTPD-FTGVPKLERLVLDGCTNLS-FVHPSIGLLKRLKVLNMKECIRIKSFPAEIEW-ASL----------- 515 (987)
Q Consensus 450 Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~-~~l----------- 515 (987)
|++|.+....+. |.++++|++|+|++|.... .+|..++.+++|++|++++|......|..+.. ..+
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 999988776664 8899999999999987644 46777889999999999998543333332210 000
Q ss_pred --------------------------------HHhhhccccceeec----------------------------------
Q 001979 516 --------------------------------EIVQNAKRLLQLHL---------------------------------- 529 (987)
Q Consensus 516 --------------------------------~~~~~l~~L~~L~L---------------------------------- 529 (987)
..+..+..++...+
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 01111111111111
Q ss_pred -----------------------CCcCCcccCccccCCCCCCEEeccCCCCCcccC-------------------ccCCC
Q 001979 530 -----------------------DQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLP-------------------SSISD 567 (987)
Q Consensus 530 -----------------------~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-------------------~~l~~ 567 (987)
..+.+..++ .+....+|+.|++.+|......+ .....
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 369 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD 369 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCB
T ss_pred hcccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccc
Confidence 111111000 11223344444444443221111 11123
Q ss_pred CCCCCEEEecCCCCCC--cccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCCCC----cccccccCC
Q 001979 568 LRSLKVLNLNGCSKLE--EVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKS----WSSLIWLPF 641 (987)
Q Consensus 568 l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~----~~~~~~~~~ 641 (987)
+++|+.|++++|.... ..+.....+.+|+.|++..+.+...+..+..+++|+.+++.++...... +.....+..
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence 4444444444443321 1222333444444454444444444444555566666666554422111 111111222
Q ss_pred CCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCccc-chhhhccCCCcEEecCCCc
Q 001979 642 YPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSL-PASINQLSRLETLNIDYCN 720 (987)
Q Consensus 642 l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~ 720 (987)
+....+.........+..+++|+.|++++|.+.....|..+..+++|++|+|++|+++.+ |..+.++++|+.|+|++|
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N- 528 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN- 528 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-
Confidence 223333333333455666777788888777655445667777778888888888877765 456777788888888775
Q ss_pred ccccCCCC----cccccccccccc
Q 001979 721 RLKALPEL----PASIDGLFAHNC 740 (987)
Q Consensus 721 ~L~~lp~l----p~sL~~L~~~~C 740 (987)
.++.++.. .++|+.|+++++
T Consensus 529 ~l~~l~~~~~~~l~~L~~L~Ls~N 552 (635)
T 4g8a_A 529 NFFSLDTFPYKCLNSLQVLDYSLN 552 (635)
T ss_dssp CCCBCCCGGGTTCTTCCEEECTTS
T ss_pred cCCCCChhHHhCCCCCCEEECCCC
Confidence 45555432 246666666554
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.6e-24 Score=238.01 Aligned_cols=249 Identities=17% Similarity=0.252 Sum_probs=150.0
Q ss_pred CceEEEcCCCCcc---ccccccCCCCCCCEEecCC-CCCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEE
Q 001979 421 RLFKLNICYSLVE---QLWQGVQNMRHLKFIKLSH-SVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVL 495 (987)
Q Consensus 421 ~L~~L~l~~~~i~---~l~~~~~~l~~L~~L~Ls~-~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L 495 (987)
++++|+++++.+. .+|..+.++++|++|+|++ |.+...+|. +.++++|++|+|++|.....+|..++.+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 4555666665555 3555555666666666653 444434442 5555555555555544444444445555555555
Q ss_pred eCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCc-ccCccccCCCCCCEEeccCCCCCcccCccCCCCC-CCCE
Q 001979 496 NMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIE-EIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLR-SLKV 573 (987)
Q Consensus 496 ~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~-~L~~ 573 (987)
++++ |.+. .+|..+..+++|++|++++|...+.+|..+..++ +|+.
T Consensus 131 ~Ls~--------------------------------N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~ 178 (313)
T 1ogq_A 131 DFSY--------------------------------NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178 (313)
T ss_dssp ECCS--------------------------------SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE
T ss_pred eCCC--------------------------------CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE
Confidence 5554 4444 4444555555555555555555555555555555 5566
Q ss_pred EEecCCCCCCcccccccCCCCCcEeeCCCCCCCC-CCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCcc
Q 001979 574 LNLNGCSKLEEVPENLGHIASLENLDLGGTAIRR-PPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGF 652 (987)
Q Consensus 574 L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 652 (987)
|++++|.....+|..+..+. |+.|++++|.+.+ .|..+..+++|+.|++++|....
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------- 235 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF---------------------- 235 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC----------------------
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee----------------------
Confidence 66655555445555555554 6666666666553 34455666666666666654321
Q ss_pred ccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCc-ccchhhhccCCCcEEecCCCcccccCC
Q 001979 653 FIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFF-SLPASINQLSRLETLNIDYCNRLKALP 726 (987)
Q Consensus 653 ~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp 726 (987)
.++.+..+++|+.|++++|.+. +.+|..+..+++|+.|+|++|.++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 236 ~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 236 DLGKVGLSKNLNGLDLRNNRIY-GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp BGGGCCCCTTCCEEECCSSCCE-ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred ecCcccccCCCCEEECcCCccc-CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 1122556678888888888875 457888888899999999999888 66654 788888889998887666543
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=4.3e-23 Score=228.95 Aligned_cols=262 Identities=17% Similarity=0.213 Sum_probs=209.8
Q ss_pred CCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCC-CCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCc
Q 001979 420 ERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTP-DFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMK 498 (987)
Q Consensus 420 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~ 498 (987)
.+++.++++++.++.+|..+. ++|++|+|++|.+....+ .|.++++|++|+|++|......|..++.+++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 368999999999999998764 799999999999877766 49999999999999987766667889999999999999
Q ss_pred CCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCcc-ccCCCCCCEEeccCCCCC--cccCccCCCCCCCCEEE
Q 001979 499 ECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPS-IKFLSRLTVLTLRDCKKL--VSLPSSISDLRSLKVLN 575 (987)
Q Consensus 499 ~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l--~~lp~~l~~l~~L~~L~ 575 (987)
+| .++.+|..+ .++|++|++++|.++.+|.. +..+++|++|++++|... +..|..+..+ +|+.|+
T Consensus 111 ~n-~l~~l~~~~----------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 111 KN-HLVEIPPNL----------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp SS-CCCSCCSSC----------CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred CC-cCCccCccc----------cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence 97 566788754 27899999999999988764 788999999999998774 3566667777 899999
Q ss_pred ecCCCCCCcccccccCCCCCcEeeCCCCCCCCCC-ccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCcccc
Q 001979 576 LNGCSKLEEVPENLGHIASLENLDLGGTAIRRPP-STIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFI 654 (987)
Q Consensus 576 l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p-~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 654 (987)
+++|.. ..+|..+. ++|+.|++++|.+..++ ..+..+++|+.|++++|..... .+
T Consensus 179 l~~n~l-~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~---------------------~~ 234 (332)
T 2ft3_A 179 ISEAKL-TGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI---------------------EN 234 (332)
T ss_dssp CCSSBC-SSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC---------------------CT
T ss_pred CcCCCC-CccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC---------------------Ch
Confidence 988764 45676554 68999999999888775 6788888999999988764321 12
Q ss_pred CCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccchh-hhc------cCCCcEEecCCCcc
Q 001979 655 PSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPAS-INQ------LSRLETLNIDYCNR 721 (987)
Q Consensus 655 ~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-i~~------l~~L~~L~L~~c~~ 721 (987)
..+..+++|+.|++++|.+. .+|..+..+++|+.|+|++|.++.+|.. +.. .++|+.|++++|+.
T Consensus 235 ~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp TGGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred hHhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 34667788999999999886 4888888889999999999988877643 222 46788888888763
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2e-23 Score=230.52 Aligned_cols=220 Identities=25% Similarity=0.359 Sum_probs=195.5
Q ss_pred ccceEEecCCCCCCCCCCC-CCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCc
Q 001979 399 ELRLLKWHGYPLRSLPSNF-QPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCT 477 (987)
Q Consensus 399 ~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 477 (987)
.++.|++.++.+..+|..+ .+.+|++|++++|.+..+|..+..+++|++|+|++|.+...++.+.++++|++|+|++|.
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP 161 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEET
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCC
Confidence 4666666677777777765 788999999999999999999999999999999999887443458999999999999999
Q ss_pred CCccccCcccc---------CCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCC
Q 001979 478 NLSFVHPSIGL---------LKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLT 548 (987)
Q Consensus 478 ~l~~~~~~i~~---------l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 548 (987)
..+.+|..++. +++|++|++++| .++.+|..+ +.+++|++|++++|.+..+|..+..+++|+
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l--------~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASI--------ANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232 (328)
T ss_dssp TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGG--------GGCTTCCEEEEESSCCCCCCGGGGGCTTCC
T ss_pred CccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhh--------cCCCCCCEEEccCCCCCcCchhhccCCCCC
Confidence 88888887765 999999999998 555888766 789999999999999999999999999999
Q ss_pred EEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCC-CCCccccCCCCCcEEEccCCC
Q 001979 549 VLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIR-RPPSTIVLLENLKELSFHGCK 627 (987)
Q Consensus 549 ~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~~p~~i~~l~~L~~L~L~~~~ 627 (987)
+|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.+.+..+.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 9999999999999999999999999999999999999999999999999999998765 679999999999999987654
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=4.3e-22 Score=241.88 Aligned_cols=365 Identities=21% Similarity=0.236 Sum_probs=251.4
Q ss_pred ceeEEEecCCCCCeeeChhhhcCCCCCcEEEecCcccCCCCC---cCCcccceEEecCCCCCCCCCC-C-CCCCceEEEc
Q 001979 353 AVEGIICLQPSKGVKLNPESFSRMKNLRLLKIRDVCLRHGIE---YLPDELRLLKWHGYPLRSLPSN-F-QPERLFKLNI 427 (987)
Q Consensus 353 ~~~~i~l~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~---~l~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~l 427 (987)
.++.+.+... .-..+.+.+|.++++|++|++++|.+..-.. .--.+|++|++++|.++.+|.. | .+.+|++|++
T Consensus 53 ~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 3444444332 3446778899999999999999998654221 2235899999999999999864 5 7999999999
Q ss_pred CCCCcccccc-ccCCCCCCCEEecCCCCCCCC-CCC-CCCCCcccEEeccCCcCCccccCccccCCCCc----EEeCcCC
Q 001979 428 CYSLVEQLWQ-GVQNMRHLKFIKLSHSVHLTK-TPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLK----VLNMKEC 500 (987)
Q Consensus 428 ~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~-~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~----~L~L~~c 500 (987)
++|.++.++. .+.++++|++|+|++|.+... .|. +..+++|++|+|++|......+..+..+.+++ .++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999999976 589999999999999987653 444 78899999999999875544444433322211 2222221
Q ss_pred C-----------------------CCccCC-------------------------------chhh-h-------------
Q 001979 501 I-----------------------RIKSFP-------------------------------AEIE-W------------- 512 (987)
Q Consensus 501 ~-----------------------~l~~lp-------------------------------~~i~-~------------- 512 (987)
. ....++ ..+. .
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 1 000000 0000 0
Q ss_pred -----------h---h-------------HHHhhh-------------------------------------------cc
Q 001979 513 -----------A---S-------------LEIVQN-------------------------------------------AK 522 (987)
Q Consensus 513 -----------~---~-------------l~~~~~-------------------------------------------l~ 522 (987)
. . +..+.. ++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 0 0 001112 23
Q ss_pred ccceeecCCcCCc---ccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCccc-ccccCCCCCcEe
Q 001979 523 RLLQLHLDQTSIE---EIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVP-ENLGHIASLENL 598 (987)
Q Consensus 523 ~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L 598 (987)
+|+.|+++.|.+. ..+.....+.+|++|++..+... .++..+..+++|+.+++.++......+ ..+..+.+++.+
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccc
Confidence 3444444444433 22333445566666666665433 345568889999999999877655544 457889999999
Q ss_pred eCCCCCCCCC-CccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCC
Q 001979 599 DLGGTAIRRP-PSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGA 677 (987)
Q Consensus 599 ~L~~~~i~~~-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~ 677 (987)
+++.|.+... +..+..+++|+.|++++|..... ..+..+..+++|+.|+|++|.+. +.
T Consensus 451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~--------------------~~~~~~~~l~~L~~L~Ls~N~L~-~l 509 (635)
T 4g8a_A 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--------------------FLPDIFTELRNLTFLDLSQCQLE-QL 509 (635)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG--------------------EECSCCTTCTTCCEEECTTSCCC-EE
T ss_pred cccccccccccccccccchhhhhhhhhhcccccc--------------------cCchhhhhccccCEEECCCCccC-Cc
Confidence 9999999865 56678899999999999863321 22356788999999999999986 44
Q ss_pred CccccCCCCCCCEEeCCCCCCcccc-hhhhccCCCcEEecCCCcccccCCC----Ccccccccccccc
Q 001979 678 IPNDLGSLSALTNLTLSRNNFFSLP-ASINQLSRLETLNIDYCNRLKALPE----LPASIDGLFAHNC 740 (987)
Q Consensus 678 lp~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~lp~----lp~sL~~L~~~~C 740 (987)
.|..+.++++|++|+|++|+++.++ ..+..+++|+.|+|++|+.....|. +|++|+.|++.+.
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 5778999999999999999999876 4678999999999999754333332 3456666666543
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=9.7e-23 Score=225.06 Aligned_cols=219 Identities=26% Similarity=0.382 Sum_probs=163.9
Q ss_pred cccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCC
Q 001979 467 KLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSR 546 (987)
Q Consensus 467 ~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 546 (987)
+++.|+|++|. +..+|..++.+++|++|+|++|. +..+|..+ +.+++|++|++++|.+..+|..+..+++
T Consensus 82 ~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~--------~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 151 (328)
T 4fcg_A 82 GRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTM--------QQFAGLETLTLARNPLRALPASIASLNR 151 (328)
T ss_dssp TCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSC-CCCCCSCG--------GGGTTCSEEEEESCCCCCCCGGGGGCTT
T ss_pred ceeEEEccCCC-chhcChhhhhCCCCCEEECCCCC-ccchhHHH--------hccCCCCEEECCCCccccCcHHHhcCcC
Confidence 34444444433 22455555556666666666553 33555544 5666666667777777777777888888
Q ss_pred CCEEeccCCCCCcccCccCCC---------CCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCC
Q 001979 547 LTVLTLRDCKKLVSLPSSISD---------LRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLEN 617 (987)
Q Consensus 547 L~~L~L~~~~~l~~lp~~l~~---------l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~ 617 (987)
|++|++++|...+.+|..+.. +++|++|++++|... .+|..++.+++|+.|++++|.+.++|..+..+++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~ 230 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence 888888888888888877654 889999999988554 8888889999999999999999988888888999
Q ss_pred CcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCC
Q 001979 618 LKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNN 697 (987)
Q Consensus 618 L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~ 697 (987)
|+.|++++|.... ..+..+..+++|+.|+|++|++. +.+|..+..+++|+.|+|++|+
T Consensus 231 L~~L~Ls~n~~~~---------------------~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 231 LEELDLRGCTALR---------------------NYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CCEEECTTCTTCC---------------------BCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTTCT
T ss_pred CCEEECcCCcchh---------------------hhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCCCC
Confidence 9999998876442 23445777888999999988775 5678888888899999999886
Q ss_pred Cc-ccchhhhccCCCcEEecCC
Q 001979 698 FF-SLPASINQLSRLETLNIDY 718 (987)
Q Consensus 698 l~-~lp~~i~~l~~L~~L~L~~ 718 (987)
+. .+|..+.++++|+.+++..
T Consensus 289 ~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 289 NLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TCCCCCGGGGGSCTTCEEECCG
T ss_pred chhhccHHHhhccCceEEeCCH
Confidence 55 7888888899888888875
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=6.2e-23 Score=225.24 Aligned_cols=248 Identities=20% Similarity=0.248 Sum_probs=205.4
Q ss_pred CcccEEeccCCcCCc--cccCccccCCCCcEEeCcC-CCCCccCCchhhhhhHHHhhhccccceeecCCcCCc-ccCccc
Q 001979 466 PKLERLVLDGCTNLS--FVHPSIGLLKRLKVLNMKE-CIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIE-EIPPSI 541 (987)
Q Consensus 466 ~~L~~L~L~~~~~l~--~~~~~i~~l~~L~~L~L~~-c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~-~lp~~i 541 (987)
.++++|+|++|...+ .+|..++.+++|++|++++ |...+.+|..+ ..+++|++|++++|.+. .+|..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l--------~~l~~L~~L~Ls~n~l~~~~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI--------AKLTQLHYLYITHTNVSGAIPDFL 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG--------GGCTTCSEEEEEEECCEEECCGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH--------hcCCCCCEEECcCCeeCCcCCHHH
Confidence 356777777766655 6777788888888888885 55555677665 78888888888888887 788889
Q ss_pred cCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCC-CCcEeeCCCCCCC-CCCccccCCCCCc
Q 001979 542 KFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIA-SLENLDLGGTAIR-RPPSTIVLLENLK 619 (987)
Q Consensus 542 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~L~~~~i~-~~p~~i~~l~~L~ 619 (987)
..+++|++|++++|...+.+|..+..+++|++|++++|.....+|..+..++ +|+.|++++|.+. ..|..+..++ |+
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~ 200 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CS
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-cc
Confidence 9999999999999998889999999999999999999988778999999998 9999999999998 6788888887 99
Q ss_pred EEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCc
Q 001979 620 ELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFF 699 (987)
Q Consensus 620 ~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~ 699 (987)
.|++++|.... ..+..+..+++|+.|++++|.+.. .+..+..+++|++|+|++|.++
T Consensus 201 ~L~Ls~N~l~~---------------------~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 201 FVDLSRNMLEG---------------------DASVLFGSDKNTQKIHLAKNSLAF--DLGKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp EEECCSSEEEE---------------------CCGGGCCTTSCCSEEECCSSEECC--BGGGCCCCTTCCEEECCSSCCE
T ss_pred EEECcCCcccC---------------------cCCHHHhcCCCCCEEECCCCceee--ecCcccccCCCCEEECcCCccc
Confidence 99999986432 223457889999999999999863 4444888999999999999999
Q ss_pred -ccchhhhccCCCcEEecCCCcccccCCCC--ccccccccccccccccc
Q 001979 700 -SLPASINQLSRLETLNIDYCNRLKALPEL--PASIDGLFAHNCTSLIK 745 (987)
Q Consensus 700 -~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--p~sL~~L~~~~C~~L~~ 745 (987)
.+|..+..+++|+.|+|++|+.-..+|.. .++|+.+++.+.+.|..
T Consensus 258 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred CcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 78999999999999999998766677764 24566666666665543
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=4.9e-23 Score=230.61 Aligned_cols=270 Identities=15% Similarity=0.187 Sum_probs=187.1
Q ss_pred EEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCC-CCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCC
Q 001979 424 KLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTP-DFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIR 502 (987)
Q Consensus 424 ~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~ 502 (987)
..+.+++.++.+|.++. ++|++|++++|.+....+ .+.++++|++|++++|......+..++.+++|++|++++| .
T Consensus 35 ~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-Y 111 (353)
T ss_dssp EEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-c
Confidence 34555555555555433 356666666666554444 3666666666666666544444455677777777777776 4
Q ss_pred CccCCchhhhhhHHHhhhccccceeecCCcCCcccCc--cccCCCCCCEEeccCCCCCccc-CccCCCCCCCCEEEecCC
Q 001979 503 IKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPP--SIKFLSRLTVLTLRDCKKLVSL-PSSISDLRSLKVLNLNGC 579 (987)
Q Consensus 503 l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~l~~c 579 (987)
++.+|... +..+++|++|++++|.++.+|. .+..+++|++|++++|...+.+ |..+..+++|++|++++|
T Consensus 112 l~~~~~~~-------~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 112 LSNLSSSW-------FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp CSSCCHHH-------HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CCcCCHhH-------hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 44555431 3677778888888888887776 6788888888888888655554 456788888888888888
Q ss_pred CCCCcccccccCCCCCcEeeCCCCCCCCCCccc-cCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCC
Q 001979 580 SKLEEVPENLGHIASLENLDLGGTAIRRPPSTI-VLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLS 658 (987)
Q Consensus 580 ~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 658 (987)
......|..+..+++|++|++++|.+..+|..+ ..+++|+.|++++|......+.. .+...
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~------------------l~~~~ 246 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE------------------LSTGE 246 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------------------------
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc------------------ccccc
Confidence 777667888888888889988888887776544 35788899998888754321111 11123
Q ss_pred CCCcccEEecCCCCCCCC---CCccccCCCCCCCEEeCCCCCCcccchhh-hccCCCcEEecCCCcc
Q 001979 659 GLHCLSRLDLGDCNLQEG---AIPNDLGSLSALTNLTLSRNNFFSLPASI-NQLSRLETLNIDYCNR 721 (987)
Q Consensus 659 ~l~~L~~L~Ls~~~l~~~---~lp~~l~~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~L~~c~~ 721 (987)
....++.++++++.+... .+|..+..+++|+.|+|++|+++.+|..+ ..+++|+.|+|++|+.
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 456678888888876432 35667888999999999999999999875 8899999999999863
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=6.8e-21 Score=226.29 Aligned_cols=255 Identities=22% Similarity=0.208 Sum_probs=132.9
Q ss_pred CCcEEEecCcccCCCCCcCCcccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCC
Q 001979 378 NLRLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLT 457 (987)
Q Consensus 378 ~Lr~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~ 457 (987)
+++.|+++++.+..-+..++++|+.|++.+|.++.+|. .+.+|++|++++|.++.+|. .+++|++|+|++|.+..
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC
Confidence 46667776666654444455566666666666666665 45566666666666666554 45566666666665443
Q ss_pred CCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCccc
Q 001979 458 KTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEI 537 (987)
Q Consensus 458 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~l 537 (987)
..+ .+++|+.|++++|. +..+|.. +++|++|++++| .++.+|. .+.+|+.|++++|.++.+
T Consensus 116 l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~-----------~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPA-----------LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSSCCSCC
T ss_pred CCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCC-----------ccCCCCEEECCCCCCCCC
Confidence 222 34555566665543 2334332 255555555554 3333332 123455555555555555
Q ss_pred CccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCC
Q 001979 538 PPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLEN 617 (987)
Q Consensus 538 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~ 617 (987)
| ..+++|+.|++++|... .+|.. +++|+.|++++|.++.+|.. +++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~-------------------------~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~ 222 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLA-------------------------SLPTL---PSELYKLWAYNNRLTSLPAL---PSG 222 (622)
T ss_dssp C---CCCTTCCEEECCSSCCS-------------------------CCCCC---CTTCCEEECCSSCCSSCCCC---CTT
T ss_pred c---ccCCCCcEEECCCCCCC-------------------------CCCCc---cchhhEEECcCCcccccCCC---CCC
Confidence 4 23444555555544322 23321 24455555555555544432 244
Q ss_pred CcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCC
Q 001979 618 LKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNN 697 (987)
Q Consensus 618 L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~ 697 (987)
|+.|++++|..... + ..+++|+.|+|++|.+.. +|. .+++|+.|+|++|+
T Consensus 223 L~~L~Ls~N~L~~l-----------------------p--~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 223 LKELIVSGNRLTSL-----------------------P--VLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CCEEECCSSCCSCC-----------------------C--CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC
T ss_pred CCEEEccCCccCcC-----------------------C--CCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCC
Confidence 55555555432210 0 223456666666665542 444 44566666666666
Q ss_pred CcccchhhhccCCCcEEecCCCc
Q 001979 698 FFSLPASINQLSRLETLNIDYCN 720 (987)
Q Consensus 698 l~~lp~~i~~l~~L~~L~L~~c~ 720 (987)
++.+|..+.++++|+.|+|++|+
T Consensus 273 L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 273 LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCcCCHHHhhccccCEEEecCCC
Confidence 66666666666666666666654
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=6.3e-21 Score=226.54 Aligned_cols=246 Identities=24% Similarity=0.251 Sum_probs=179.1
Q ss_pred CCCcEEEecCcccCCCCCcCCcccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCC
Q 001979 377 KNLRLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHL 456 (987)
Q Consensus 377 ~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~ 456 (987)
++|+.|++++|.+.. +...+++|++|++++|.+..+|. .+.+|++|++++|.++.+|. .+++|+.|++++|.+.
T Consensus 61 ~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLT 134 (622)
T ss_dssp TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCS
T ss_pred CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCC
Confidence 799999999998874 44467899999999999999998 78999999999999999987 6789999999999876
Q ss_pred CCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcc
Q 001979 457 TKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEE 536 (987)
Q Consensus 457 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~ 536 (987)
. +|. .+++|++|+|++|.. ..+|. .+.+|+.|++++| .++.+|. .+++|+.|++++|.++.
T Consensus 135 ~-lp~--~l~~L~~L~Ls~N~l-~~l~~---~~~~L~~L~L~~N-~l~~l~~-----------~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 135 S-LPV--LPPGLQELSVSDNQL-ASLPA---LPSELCKLWAYNN-QLTSLPM-----------LPSGLQELSVSDNQLAS 195 (622)
T ss_dssp C-CCC--CCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSSCCSC
T ss_pred c-CCC--CCCCCCEEECcCCcC-CCcCC---ccCCCCEEECCCC-CCCCCcc-----------cCCCCcEEECCCCCCCC
Confidence 5 443 358999999999854 45554 3578999999997 5666772 46889999999999999
Q ss_pred cCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCC
Q 001979 537 IPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLE 616 (987)
Q Consensus 537 lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~ 616 (987)
+|.. +++|+.|++++|... .+|. .+++|+.|++++|. +..+| ..+++|+.|++++|.++.+|.
T Consensus 196 l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N~L~~lp~------ 258 (622)
T 3g06_A 196 LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNR-LTSLP---VLPSELKELMVSGNRLTSLPM------ 258 (622)
T ss_dssp CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSCCCC------
T ss_pred CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCc-cCcCC---CCCCcCcEEECCCCCCCcCCc------
Confidence 8864 467778887776433 3443 13445555555542 22233 223444444444444443332
Q ss_pred CCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCC
Q 001979 617 NLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRN 696 (987)
Q Consensus 617 ~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n 696 (987)
.+++|+.|+|++|.+. .+|..+..+++|+.|+|++|
T Consensus 259 ------------------------------------------~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 259 ------------------------------------------LPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp ------------------------------------------CCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEECCSC
T ss_pred ------------------------------------------ccccCcEEeCCCCCCC--cCCHHHhhccccCEEEecCC
Confidence 3456777777778775 37878888888888888888
Q ss_pred CCcc-cchhhhcc
Q 001979 697 NFFS-LPASINQL 708 (987)
Q Consensus 697 ~l~~-lp~~i~~l 708 (987)
.++. .|..+..+
T Consensus 295 ~l~~~~~~~l~~L 307 (622)
T 3g06_A 295 PLSERTLQALREI 307 (622)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHhc
Confidence 8873 44444443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=8.9e-22 Score=215.73 Aligned_cols=245 Identities=20% Similarity=0.245 Sum_probs=144.4
Q ss_pred eEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccc-cCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCc
Q 001979 402 LLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQG-VQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLS 480 (987)
Q Consensus 402 ~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~ 480 (987)
.+++.+..+..+|..+ +.+|++|++++|.++.++.. +.++++|++|+|++|.+... .
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---------------------~ 68 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK---------------------G 68 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE---------------------E
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc---------------------c
Confidence 4555556666666543 24555555555555555443 34455555555554443211 1
Q ss_pred cccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCc--cccCCCCCCEEeccCCCCC
Q 001979 481 FVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPP--SIKFLSRLTVLTLRDCKKL 558 (987)
Q Consensus 481 ~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l 558 (987)
..+..+..+++|++|++++| .+..+|..+ ..+++|++|++++|.++.++. .+..+++|++|++++|...
T Consensus 69 ~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~--------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 139 (306)
T 2z66_A 69 CCSQSDFGTTSLKYLDLSFN-GVITMSSNF--------LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139 (306)
T ss_dssp EEEHHHHSCSCCCEEECCSC-SEEEEEEEE--------ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE
T ss_pred CcccccccccccCEEECCCC-ccccChhhc--------CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC
Confidence 11333444555555555554 233344433 455566666666666665543 4666777777777777666
Q ss_pred cccCccCCCCCCCCEEEecCCCCCC-cccccccCCCCCcEeeCCCCCCCCC-CccccCCCCCcEEEccCCCCCCCCcccc
Q 001979 559 VSLPSSISDLRSLKVLNLNGCSKLE-EVPENLGHIASLENLDLGGTAIRRP-PSTIVLLENLKELSFHGCKGQRKSWSSL 636 (987)
Q Consensus 559 ~~lp~~l~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~L~~~~i~~~-p~~i~~l~~L~~L~L~~~~~~~~~~~~~ 636 (987)
+..|..+..+++|++|++++|.... .+|..+..+++|+.|++++|.++++ |..+..+++|+.|++++|.....
T Consensus 140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----- 214 (306)
T 2z66_A 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL----- 214 (306)
T ss_dssp ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC-----
T ss_pred ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc-----
Confidence 6666666677777777777765544 3566677777777777777777655 45666677777777776653321
Q ss_pred cccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCC-CCCEEeCCCCCCc
Q 001979 637 IWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLS-ALTNLTLSRNNFF 699 (987)
Q Consensus 637 ~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~-~L~~L~L~~n~l~ 699 (987)
....+..+++|+.|++++|.+. +..|..+..++ +|+.|+|++|.++
T Consensus 215 ----------------~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 215 ----------------DTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp ----------------CSGGGTTCTTCCEEECTTSCCC-BCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred ----------------ChhhccCcccCCEeECCCCCCc-ccCHHHHHhhhccCCEEEccCCCee
Confidence 1123556677788888888775 34566667664 7888888888776
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=9.4e-22 Score=220.16 Aligned_cols=272 Identities=19% Similarity=0.196 Sum_probs=208.6
Q ss_pred eEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccc-ccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCC
Q 001979 402 LLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQ-GVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNL 479 (987)
Q Consensus 402 ~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l 479 (987)
..+..++.+..+|..+. ++|++|++++|.++.++. .+.++++|++|+|++|.+....+. |.++++|++|+|++|...
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 35666777788887653 488889999888888866 788899999999999887776665 888899999999987654
Q ss_pred ccccCccccCCCCcEEeCcCCCCCccCCc-hhhhhhHHHhhhccccceeecCCc-CCcccC-ccccCCCCCCEEeccCCC
Q 001979 480 SFVHPSIGLLKRLKVLNMKECIRIKSFPA-EIEWASLEIVQNAKRLLQLHLDQT-SIEEIP-PSIKFLSRLTVLTLRDCK 556 (987)
Q Consensus 480 ~~~~~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~~~l~~~~~l~~L~~L~L~~~-~i~~lp-~~i~~l~~L~~L~L~~~~ 556 (987)
...+..++.+++|++|++++| .++.+|. .. +..+++|++|++++| .+..++ ..+..+++|++|++++|.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~-------~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGN-PYKTLGETSL-------FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTC-CCSSSCSSCS-------CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred cCCHhHhCCCccCCEEECCCC-CCcccCchhh-------hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 433334788899999999987 4556665 21 278889999999998 577664 568899999999999998
Q ss_pred CCcccCccCCCCCCCCEEEecCCCCCCccccc-ccCCCCCcEeeCCCCCCCCCCc----cccCCCCCcEEEccCCCCCCC
Q 001979 557 KLVSLPSSISDLRSLKVLNLNGCSKLEEVPEN-LGHIASLENLDLGGTAIRRPPS----TIVLLENLKELSFHGCKGQRK 631 (987)
Q Consensus 557 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~L~~~~i~~~p~----~i~~l~~L~~L~L~~~~~~~~ 631 (987)
..+..|..+..+++|++|++++|.. ..+|.. +..+++|+.|++++|.+++.+. .......++.++++++.....
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred cCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 8888888899999999999999875 555544 4568999999999999887642 223466788888887753321
Q ss_pred CcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccc-cCCCCCCCEEeCCCCCCcccc
Q 001979 632 SWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPND-LGSLSALTNLTLSRNNFFSLP 702 (987)
Q Consensus 632 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~-l~~l~~L~~L~L~~n~l~~lp 702 (987)
. ....+..+..+++|+.|++++|.+.. +|.. +..+++|++|+|++|.+..-+
T Consensus 265 ~-----------------l~~l~~~l~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 265 S-----------------LFQVMKLLNQISGLLELEFSRNQLKS--VPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp H-----------------HHHHHHHHHTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred c-----------------hhhhHHHHhcccCCCEEECCCCCCCc--cCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 0 01123456788999999999999974 7776 489999999999999888543
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.5e-20 Score=216.92 Aligned_cols=241 Identities=18% Similarity=0.205 Sum_probs=211.5
Q ss_pred CcEEEecCcccCCCCCcCCcccceEEecCCCCCCCCC-CC-CCCCceEEEcCCCCccccc-cccCCCCCCCEEecCCCCC
Q 001979 379 LRLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPS-NF-QPERLFKLNICYSLVEQLW-QGVQNMRHLKFIKLSHSVH 455 (987)
Q Consensus 379 Lr~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~ 455 (987)
.+.++..+..+..-+..++..++.|+++++.+..++. .| .+.+|++|++++|.+..++ ..+..+++|++|+|++|.+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 4566666666666667778899999999999999874 45 8999999999999999885 5789999999999999988
Q ss_pred CCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCC
Q 001979 456 LTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSI 534 (987)
Q Consensus 456 ~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i 534 (987)
....+. |..+++|++|+|++|......+..+..+++|++|++++|..+..++... +..+++|++|++++|.+
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-------~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA-------FEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-------TTTCSSCCEEECTTSCC
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcch-------hhcccccCeecCCCCcC
Confidence 876664 9999999999999987655555578999999999999998888888643 47899999999999999
Q ss_pred cccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCc-ccc
Q 001979 535 EEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPS-TIV 613 (987)
Q Consensus 535 ~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~-~i~ 613 (987)
+.+|. +..+++|+.|+|++|...+..|..|..+++|+.|++++|......+..+..+++|+.|+|++|.++.+|. .+.
T Consensus 198 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 198 REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp SSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred ccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 99985 8899999999999998888888899999999999999998877778889999999999999999998865 467
Q ss_pred CCCCCcEEEccCCC
Q 001979 614 LLENLKELSFHGCK 627 (987)
Q Consensus 614 ~l~~L~~L~L~~~~ 627 (987)
.+++|+.|+|++|+
T Consensus 277 ~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 277 PLHHLERIHLHHNP 290 (440)
T ss_dssp SCTTCCEEECCSSC
T ss_pred cccCCCEEEcCCCC
Confidence 89999999999986
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.5e-20 Score=217.93 Aligned_cols=241 Identities=19% Similarity=0.179 Sum_probs=211.4
Q ss_pred CcEEEecCcccCCCCCcCCcccceEEecCCCCCCCCC-CC-CCCCceEEEcCCCCccccc-cccCCCCCCCEEecCCCCC
Q 001979 379 LRLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPS-NF-QPERLFKLNICYSLVEQLW-QGVQNMRHLKFIKLSHSVH 455 (987)
Q Consensus 379 Lr~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~ 455 (987)
.+.++..+..+..-+..+|+.+++|++.++.+..++. .| .+.+|++|++++|.++.++ ..+..+++|++|+|++|.+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 4556666666666666778899999999999998854 45 8999999999999999885 6789999999999999998
Q ss_pred CCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCC
Q 001979 456 LTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSI 534 (987)
Q Consensus 456 ~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i 534 (987)
....+. |..+++|++|+|++|......+..+..+++|++|++++|..++.+|... +..+++|++|++++|.+
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-------~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA-------FEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-------TTTCTTCCEEECTTSCC
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh-------ccCCCCCCEEECCCCcc
Confidence 877766 8899999999999987655445578999999999999998998888743 47899999999999999
Q ss_pred cccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCc-ccc
Q 001979 535 EEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPS-TIV 613 (987)
Q Consensus 535 ~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~-~i~ 613 (987)
+.+|. +..+++|+.|+|++|...+..|..+.++++|+.|++++|......|..+..+++|+.|+|++|.++.+|. .+.
T Consensus 209 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 209 KDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp SSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred ccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 99975 8899999999999999888889899999999999999998877778889999999999999999998865 467
Q ss_pred CCCCCcEEEccCCC
Q 001979 614 LLENLKELSFHGCK 627 (987)
Q Consensus 614 ~l~~L~~L~L~~~~ 627 (987)
.+++|+.|++++|+
T Consensus 288 ~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 288 PLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccCCCEEEccCCC
Confidence 89999999999986
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=8.8e-21 Score=207.78 Aligned_cols=242 Identities=21% Similarity=0.231 Sum_probs=202.7
Q ss_pred cEEEecCcccCCCCCcCCcccceEEecCCCCCCCCCC-C-CCCCceEEEcCCCCcccc---ccccCCCCCCCEEecCCCC
Q 001979 380 RLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPSN-F-QPERLFKLNICYSLVEQL---WQGVQNMRHLKFIKLSHSV 454 (987)
Q Consensus 380 r~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~~l---~~~~~~l~~L~~L~Ls~~~ 454 (987)
+.++.++..+..-+..+|+.++.|++.++.+..+|.. | .+++|++|++++|.++.+ +..+..+++|++|+|++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 3456666666555556778999999999999999976 3 889999999999999865 5667789999999999998
Q ss_pred CCCCCCCCCCCCcccEEeccCCcCCcccc-CccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcC
Q 001979 455 HLTKTPDFTGVPKLERLVLDGCTNLSFVH-PSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTS 533 (987)
Q Consensus 455 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~ 533 (987)
+....+.+..+++|++|++++|......+ ..+..+++|++|++++|......|..+ ..+++|++|++++|.
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--------NGLSSLEVLKMAGNS 161 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--------TTCTTCCEEECTTCE
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--------ccCcCCCEEECCCCc
Confidence 77655568899999999999976554433 478899999999999986555555544 788999999999999
Q ss_pred Ccc--cCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCC-Cc
Q 001979 534 IEE--IPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRP-PS 610 (987)
Q Consensus 534 i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~-p~ 610 (987)
+.. +|..+..+++|++|++++|...+..|..+..+++|+.|++++|......+..+..+++|+.|++++|.+.+. |.
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 985 899999999999999999988877788899999999999999987665566789999999999999999865 56
Q ss_pred cccCC-CCCcEEEccCCCCC
Q 001979 611 TIVLL-ENLKELSFHGCKGQ 629 (987)
Q Consensus 611 ~i~~l-~~L~~L~L~~~~~~ 629 (987)
.+..+ ++|+.|++++|...
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEE
T ss_pred HHHhhhccCCEEEccCCCee
Confidence 77777 49999999998743
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=4.3e-20 Score=213.21 Aligned_cols=244 Identities=21% Similarity=0.299 Sum_probs=141.2
Q ss_pred CceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcC
Q 001979 421 RLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKE 499 (987)
Q Consensus 421 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~ 499 (987)
....++..+..++.+|.++. ++++.|+|++|.+....+. |.++++|++|+|++|......+..+..+++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 45677788888888887664 6788888888877666543 77777777777777655444445666677777777776
Q ss_pred CCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCc-cccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecC
Q 001979 500 CIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPP-SIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNG 578 (987)
Q Consensus 500 c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~ 578 (987)
| .++.+|... +..+++|++|++++|.++.+|. .+..+++|++|++++|+..+.++..
T Consensus 122 n-~l~~~~~~~-------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-------------- 179 (440)
T 3zyj_A 122 N-RLTTIPNGA-------FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-------------- 179 (440)
T ss_dssp S-CCSSCCTTT-------SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT--------------
T ss_pred C-cCCeeCHhH-------hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc--------------
Confidence 6 344444321 2455555555555555555443 3444555555555554444443331
Q ss_pred CCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCC
Q 001979 579 CSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLS 658 (987)
Q Consensus 579 c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 658 (987)
.+..+++|+.|++++|.++.+|. +..+++|+.|++++|.... ..+..+.
T Consensus 180 ---------~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~---------------------~~~~~~~ 228 (440)
T 3zyj_A 180 ---------AFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSA---------------------IRPGSFQ 228 (440)
T ss_dssp ---------TTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCE---------------------ECTTTTT
T ss_pred ---------hhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCc---------------------cChhhhc
Confidence 34444555555555555554442 4445555555555543221 1123355
Q ss_pred CCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccchh-hhccCCCcEEecCCCc
Q 001979 659 GLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPAS-INQLSRLETLNIDYCN 720 (987)
Q Consensus 659 ~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 720 (987)
++++|+.|+|++|.+.. ..+..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 229 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTCCCCE-ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCccCCEEECCCCceeE-EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 55666666666666542 2344566666666666666666665543 3566666777766654
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=4.1e-20 Score=214.15 Aligned_cols=194 Identities=24% Similarity=0.334 Sum_probs=120.7
Q ss_pred CceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcC
Q 001979 421 RLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKE 499 (987)
Q Consensus 421 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~ 499 (987)
....++.++..++.+|.++. ++|++|+|++|.+....+. |.++++|++|+|++|......+..+..+++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45678888888888887664 6888888888887776554 78888888888888766555556777788888888887
Q ss_pred CCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCc-cccCCCCCCEEeccCCCCCcccCcc-CCCCCCCCEEEec
Q 001979 500 CIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPP-SIKFLSRLTVLTLRDCKKLVSLPSS-ISDLRSLKVLNLN 577 (987)
Q Consensus 500 c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~ 577 (987)
| .++.+|... +..+++|++|++++|.++.+|. .+..+++|++|++++|..++.++.. +..+++|+.|+++
T Consensus 133 n-~l~~~~~~~-------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 133 N-WLTVIPSGA-------FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp S-CCSBCCTTT-------SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred C-cCCccChhh-------hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 6 344555432 2556667777777766666654 3556666666666665555555442 4555555555555
Q ss_pred CCCCCCcccccccCCCCCcEeeCCCCCCCCC-CccccCCCCCcEEEccCC
Q 001979 578 GCSKLEEVPENLGHIASLENLDLGGTAIRRP-PSTIVLLENLKELSFHGC 626 (987)
Q Consensus 578 ~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~-p~~i~~l~~L~~L~L~~~ 626 (987)
+|.. ..+| .+..+++|+.|++++|.+.++ |..+..+++|+.|++++|
T Consensus 205 ~n~l-~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 205 MCNI-KDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp TSCC-SSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred CCcc-cccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 5532 2333 244455555555555555443 333444444444444443
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=4e-22 Score=219.37 Aligned_cols=261 Identities=17% Similarity=0.136 Sum_probs=167.1
Q ss_pred ceEEEcCCCCcccccc-ccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcC
Q 001979 422 LFKLNICYSLVEQLWQ-GVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKE 499 (987)
Q Consensus 422 L~~L~l~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~ 499 (987)
+..++++.+.+.+.+. .+..+++|++|+|++|.+....|. +..+++|++|+|++|......+ ++.+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4445555566654433 334566778888887776665543 7777778888887765544332 77777888888877
Q ss_pred CCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCC
Q 001979 500 CIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGC 579 (987)
Q Consensus 500 c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c 579 (987)
|. ++.+| ..++|++|++++|.+..++.. .+++|++|++++|......|..+..+++|+.|++++|
T Consensus 90 n~-l~~l~------------~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 90 NY-VQELL------------VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp SE-EEEEE------------ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred Cc-ccccc------------CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence 63 33332 236777777777777766543 3667777777777666655656667777777777777
Q ss_pred CCCCcccccc-cCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCC
Q 001979 580 SKLEEVPENL-GHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLS 658 (987)
Q Consensus 580 ~~l~~lp~~l-~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 658 (987)
......+..+ ..+++|+.|++++|.++.++... .+++|+.|++++|.... .++.+.
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~----------------------l~~~~~ 211 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAF----------------------MGPEFQ 211 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCE----------------------ECGGGG
T ss_pred CCCcccHHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCc----------------------chhhhc
Confidence 6555444444 35677777777777776664332 36667777776665321 122345
Q ss_pred CCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCc--ccchhhhccCCCcEEecCCCccccc
Q 001979 659 GLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFF--SLPASINQLSRLETLNIDYCNRLKA 724 (987)
Q Consensus 659 ~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~ 724 (987)
.+++|+.|++++|.+.. +|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++.+|+.++.
T Consensus 212 ~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 212 SAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp GGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred ccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 56667777777776653 6666677777777777777776 5666666677777777666555443
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=4.3e-20 Score=200.05 Aligned_cols=205 Identities=22% Similarity=0.230 Sum_probs=95.4
Q ss_pred CCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhc
Q 001979 443 RHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNA 521 (987)
Q Consensus 443 ~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l 521 (987)
++|++|+|++|.+....+. |..+++|++|+|++|......+..++.+++|++|++++|..++.++... +..+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~-------~~~l 104 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT-------FHGL 104 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT-------TTTC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHH-------hcCC
Confidence 3445555554444433332 4455555555555543333334455555555555555554343332111 1333
Q ss_pred cccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCC
Q 001979 522 KRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLG 601 (987)
Q Consensus 522 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~ 601 (987)
++|++|++++|.+..+ .|..+..+++|++|++++|......+..+..+++|+.|+++
T Consensus 105 ~~L~~L~l~~n~l~~~-----------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQEL-----------------------GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp TTCCEEECTTSCCCCC-----------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCCEEECCCCcCCEE-----------------------CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC
Confidence 3333344433433333 23333444444444444443332222334445555555555
Q ss_pred CCCCCCCCc-cccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCcc
Q 001979 602 GTAIRRPPS-TIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPN 680 (987)
Q Consensus 602 ~~~i~~~p~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~ 680 (987)
+|.++.++. .+..+++|+.|++++|.... ..+..+..+++|+.|++++|.+.. ..+.
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------~~~~~~~~l~~L~~L~l~~n~l~~-~~~~ 219 (285)
T 1ozn_A 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAH---------------------VHPHAFRDLGRLMTLYLFANNLSA-LPTE 219 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCE---------------------ECTTTTTTCTTCCEEECCSSCCSC-CCHH
T ss_pred CCcccccCHHHhcCccccCEEECCCCcccc---------------------cCHhHccCcccccEeeCCCCcCCc-CCHH
Confidence 555544433 24444555555555443211 112334555666666666666643 2223
Q ss_pred ccCCCCCCCEEeCCCCCCc
Q 001979 681 DLGSLSALTNLTLSRNNFF 699 (987)
Q Consensus 681 ~l~~l~~L~~L~L~~n~l~ 699 (987)
.+..+++|+.|+|++|.+.
T Consensus 220 ~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp HHTTCTTCCEEECCSSCEE
T ss_pred HcccCcccCEEeccCCCcc
Confidence 4666677777777777665
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=4.6e-23 Score=240.12 Aligned_cols=329 Identities=17% Similarity=0.179 Sum_probs=228.6
Q ss_pred hhcCCCCCcEEEecCcccCCC-CCcC------CcccceEEecCCCCCCC-CCCC--CCC----CceEEEcCCCCcc----
Q 001979 372 SFSRMKNLRLLKIRDVCLRHG-IEYL------PDELRLLKWHGYPLRSL-PSNF--QPE----RLFKLNICYSLVE---- 433 (987)
Q Consensus 372 ~f~~~~~Lr~L~l~~~~l~~~-~~~l------~~~Lr~L~~~~~~l~~l-p~~~--~~~----~L~~L~l~~~~i~---- 433 (987)
.|..+++|+.|++++|.+... ...+ .+.|+.|+++++.+... +..+ .+. +|++|++++|.+.
T Consensus 23 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 377788999999998876531 1111 25788999998887542 1111 222 6999999999888
Q ss_pred -ccccccCCCCCCCEEecCCCCCCCCCCC------CCCCCcccEEeccCCcCCcc----ccCccccCCCCcEEeCcCCCC
Q 001979 434 -QLWQGVQNMRHLKFIKLSHSVHLTKTPD------FTGVPKLERLVLDGCTNLSF----VHPSIGLLKRLKVLNMKECIR 502 (987)
Q Consensus 434 -~l~~~~~~l~~L~~L~Ls~~~~~~~~~~------~~~l~~L~~L~L~~~~~l~~----~~~~i~~l~~L~~L~L~~c~~ 502 (987)
.++..+..+++|++|+|++|.+....+. ....++|++|++++|..... ++..+..+++|++|++++|..
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 4678888999999999999886433221 33466899999999865542 355667789999999999853
Q ss_pred CccCCchhhhhhHHHhhhccccceeecCCcCCcc-----cCccccCCCCCCEEeccCCCCCcc----c-CccCCCCCCCC
Q 001979 503 IKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEE-----IPPSIKFLSRLTVLTLRDCKKLVS----L-PSSISDLRSLK 572 (987)
Q Consensus 503 l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~----l-p~~l~~l~~L~ 572 (987)
...-+..+. -......++|++|++++|.++. ++..+..+++|++|++++|..... + +..+..+++|+
T Consensus 183 ~~~~~~~l~---~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~ 259 (461)
T 1z7x_W 183 NEAGVRVLC---QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259 (461)
T ss_dssp HHHHHHHHH---HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred chHHHHHHH---HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCce
Confidence 221111110 0011235689999999998885 677788899999999999865432 1 22234688999
Q ss_pred EEEecCCCCCCc----ccccccCCCCCcEeeCCCCCCCCC-----Ccccc-CCCCCcEEEccCCCCCCCCcccccccCCC
Q 001979 573 VLNLNGCSKLEE----VPENLGHIASLENLDLGGTAIRRP-----PSTIV-LLENLKELSFHGCKGQRKSWSSLIWLPFY 642 (987)
Q Consensus 573 ~L~l~~c~~l~~----lp~~l~~l~~L~~L~L~~~~i~~~-----p~~i~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~l 642 (987)
+|++++|..... ++..+..+++|+.|++++|.+... ...+. ..++|+.|++++|.......
T Consensus 260 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--------- 330 (461)
T 1z7x_W 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC--------- 330 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH---------
T ss_pred EEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH---------
Confidence 999999865443 677788889999999999987632 11121 23689999999987432210
Q ss_pred CCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCc---cccC-CCCCCCEEeCCCCCCc-----ccchhhhccCCCcE
Q 001979 643 PRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIP---NDLG-SLSALTNLTLSRNNFF-----SLPASINQLSRLET 713 (987)
Q Consensus 643 ~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp---~~l~-~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~ 713 (987)
...+..+..+++|+.|++++|.+.+.... ..+. ..++|+.|+|++|.++ .+|..+..+++|+.
T Consensus 331 --------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 331 --------SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp --------HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred --------HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 01123455678999999999987542111 2222 2679999999999998 68888899999999
Q ss_pred EecCCCc
Q 001979 714 LNIDYCN 720 (987)
Q Consensus 714 L~L~~c~ 720 (987)
|++++|+
T Consensus 403 L~l~~N~ 409 (461)
T 1z7x_W 403 LDLSNNC 409 (461)
T ss_dssp EECCSSS
T ss_pred EECCCCC
Confidence 9999975
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=9.4e-20 Score=197.34 Aligned_cols=219 Identities=20% Similarity=0.227 Sum_probs=179.7
Q ss_pred ceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccc-cccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcC
Q 001979 401 RLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLW-QGVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTN 478 (987)
Q Consensus 401 r~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~ 478 (987)
+.+++.+..+..+|..+ +++|++|++++|.++.++ ..+..+++|++|+|++|.+....+. +.++++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 56777777888888765 568899999999998886 4688899999999999987776554 88899999999999875
Q ss_pred Cccc-cCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCcc-ccCCCCCCEEeccCCC
Q 001979 479 LSFV-HPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPS-IKFLSRLTVLTLRDCK 556 (987)
Q Consensus 479 l~~~-~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~ 556 (987)
+..+ +..+..+++|++|++++|......|..+ ..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--------RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--------hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 5555 6678889999999999985444334434 7888999999999999988764 7889999999999987
Q ss_pred CCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCc-cccCCCCCcEEEccCCCC
Q 001979 557 KLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPS-TIVLLENLKELSFHGCKG 628 (987)
Q Consensus 557 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~-~i~~l~~L~~L~L~~~~~ 628 (987)
.....+..+..+++|+.|++++|......|..+..+++|+.|++++|.+++++. .+..+++|+.|++++|..
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 665555568889999999999998777778889999999999999999998875 478899999999999864
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.4e-20 Score=219.22 Aligned_cols=233 Identities=18% Similarity=0.152 Sum_probs=151.8
Q ss_pred CCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhc
Q 001979 443 RHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNA 521 (987)
Q Consensus 443 ~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l 521 (987)
++|++|+|++|.+....|. |..+++|++|+|++|......| ++.+++|++|+|++| .++.+| ..
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~------------~~ 98 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL------------VG 98 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEE------------EC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCC------------CC
Confidence 3666666666666555443 6666666666666655433333 666666777777666 333333 22
Q ss_pred cccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCccccccc-CCCCCcEeeC
Q 001979 522 KRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLG-HIASLENLDL 600 (987)
Q Consensus 522 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~-~l~~L~~L~L 600 (987)
++|+.|++++|.+..++.. .+++|+.|++++|...+..|..++.+++|+.|++++|......|..+. .+++|+.|+|
T Consensus 99 ~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 5667777777777665542 456777777777776666666677777777777777766655565554 5777777777
Q ss_pred CCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCcc
Q 001979 601 GGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPN 680 (987)
Q Consensus 601 ~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~ 680 (987)
++|.++++|.. ..+++|+.|++++|.... .++.+..+++|+.|+|++|.+.. +|.
T Consensus 177 s~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~----------------------~~~~~~~l~~L~~L~Ls~N~l~~--lp~ 231 (487)
T 3oja_A 177 QYNFIYDVKGQ-VVFAKLKTLDLSSNKLAF----------------------MGPEFQSAAGVTWISLRNNKLVL--IEK 231 (487)
T ss_dssp TTSCCCEEECC-CCCTTCCEEECCSSCCCE----------------------ECGGGGGGTTCSEEECTTSCCCE--ECT
T ss_pred CCCcccccccc-ccCCCCCEEECCCCCCCC----------------------CCHhHcCCCCccEEEecCCcCcc--cch
Confidence 77777766433 246777777777765321 22335566777777777777753 777
Q ss_pred ccCCCCCCCEEeCCCCCCc--ccchhhhccCCCcEEecC
Q 001979 681 DLGSLSALTNLTLSRNNFF--SLPASINQLSRLETLNID 717 (987)
Q Consensus 681 ~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~ 717 (987)
.+..+++|+.|++++|.+. .+|..+..++.|+.|++.
T Consensus 232 ~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 7777888888888888777 667777777777777775
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=1.5e-21 Score=214.29 Aligned_cols=176 Identities=21% Similarity=0.225 Sum_probs=104.9
Q ss_pred hccccceeecCCcCCcccCccccCC-----CCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCc--ccccc--c
Q 001979 520 NAKRLLQLHLDQTSIEEIPPSIKFL-----SRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEE--VPENL--G 590 (987)
Q Consensus 520 ~l~~L~~L~L~~~~i~~lp~~i~~l-----~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~--lp~~l--~ 590 (987)
.+++|++|++++|.++.+|..+..+ ++|++|++++|...+..|..+..+++|++|++++|...+. +|..+ .
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 4444555555555554444444443 5555555555555444445555566666666666554333 22233 5
Q ss_pred CCCCCcEeeCCCCCCCCCCc----cccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEE
Q 001979 591 HIASLENLDLGGTAIRRPPS----TIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRL 666 (987)
Q Consensus 591 ~l~~L~~L~L~~~~i~~~p~----~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L 666 (987)
.+++|++|++++|.++.++. .+..+++|+.|++++|...... ..+.+..+++|+.|
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------------------~~~~~~~l~~L~~L 258 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA--------------------GAPSCDWPSQLNSL 258 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC--------------------CCSCCCCCTTCCEE
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc--------------------chhhhhhcCCCCEE
Confidence 56666666666666653321 2235566666666666533210 01234456778888
Q ss_pred ecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccchhhhccCCCcEEecCCCc
Q 001979 667 DLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCN 720 (987)
Q Consensus 667 ~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 720 (987)
+|++|.+. .+|..+. ++|+.|+|++|+++.+|. +..+++|+.|++++|+
T Consensus 259 ~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 259 NLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred ECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 88888876 3777665 788888888888888876 7888888888888864
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=5.8e-21 Score=210.12 Aligned_cols=262 Identities=14% Similarity=0.103 Sum_probs=206.8
Q ss_pred CCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhcc
Q 001979 444 HLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAK 522 (987)
Q Consensus 444 ~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~ 522 (987)
.++.++++.+.+...+.. +..+++|++|+|++|......|..++.+++|++|++++|.... .+. + ..++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~--------~~l~ 80 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD-L--------ESLS 80 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE-E--------TTCT
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh-h--------hhcC
Confidence 455666666654333333 5567899999999987766666789999999999999985433 332 3 7899
Q ss_pred ccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCC
Q 001979 523 RLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGG 602 (987)
Q Consensus 523 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~ 602 (987)
+|++|++++|.++.+|. .++|++|++++|...+..+. .+++|+.|++++|......+..+..+++|+.|++++
T Consensus 81 ~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 81 TLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp TCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT
T ss_pred CCCEEECcCCccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC
Confidence 99999999999998774 48999999999887665443 468899999999987776677889999999999999
Q ss_pred CCCCCC-Cccc-cCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCcc
Q 001979 603 TAIRRP-PSTI-VLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPN 680 (987)
Q Consensus 603 ~~i~~~-p~~i-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~ 680 (987)
|.+..+ +..+ ..+++|+.|++++|..... +....+++|+.|+|++|.+.. +|.
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------------~~~~~l~~L~~L~Ls~N~l~~--l~~ 208 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV-----------------------KGQVVFAKLKTLDLSSNKLAF--MGP 208 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-----------------------ECCCCCTTCCEEECCSSCCCE--ECG
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCccc-----------------------ccccccccCCEEECCCCcCCc--chh
Confidence 999976 3444 4789999999999874321 223457899999999999964 777
Q ss_pred ccCCCCCCCEEeCCCCCCcccchhhhccCCCcEEecCCCccc-ccCCCC---ccccccccccccccccccc
Q 001979 681 DLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCNRL-KALPEL---PASIDGLFAHNCTSLIKLC 747 (987)
Q Consensus 681 ~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L-~~lp~l---p~sL~~L~~~~C~~L~~l~ 747 (987)
.+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+.. ..+|.. .+.|+.+++.+|..++...
T Consensus 209 ~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 209 EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 799999999999999999999999999999999999998754 233332 3567777777777665543
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=1.9e-22 Score=234.79 Aligned_cols=342 Identities=18% Similarity=0.179 Sum_probs=211.1
Q ss_pred CCCcEEEecCcccCCCC-C---cCCcccceEEecCCCCC-----CCCCCC-CCCCceEEEcCCCCcccc-ccc-cCCCC-
Q 001979 377 KNLRLLKIRDVCLRHGI-E---YLPDELRLLKWHGYPLR-----SLPSNF-QPERLFKLNICYSLVEQL-WQG-VQNMR- 443 (987)
Q Consensus 377 ~~Lr~L~l~~~~l~~~~-~---~l~~~Lr~L~~~~~~l~-----~lp~~~-~~~~L~~L~l~~~~i~~l-~~~-~~~l~- 443 (987)
++|+.|+++++.+.... . ...+.|+.|++.++.+. .+|..+ .+++|++|++++|.+... +.. ...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46788888877764321 1 11247888888888876 334444 567888888888887642 211 12233
Q ss_pred ---CCCEEecCCCCCCCC----CC-CCCCCCcccEEeccCCcCCccccCcc-----ccCCCCcEEeCcCCCCCccCCchh
Q 001979 444 ---HLKFIKLSHSVHLTK----TP-DFTGVPKLERLVLDGCTNLSFVHPSI-----GLLKRLKVLNMKECIRIKSFPAEI 510 (987)
Q Consensus 444 ---~L~~L~Ls~~~~~~~----~~-~~~~l~~L~~L~L~~~~~l~~~~~~i-----~~l~~L~~L~L~~c~~l~~lp~~i 510 (987)
+|++|+|++|.+... ++ .+..+++|++|+|++|......+..+ ...++|++|++++|......+..+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 688888888876532 23 37778888888888876443322222 224578888888874332211111
Q ss_pred hhhhHHHhhhccccceeecCCcCCccc-----Ccccc-CCCCCCEEeccCCCCCcc----cCccCCCCCCCCEEEecCCC
Q 001979 511 EWASLEIVQNAKRLLQLHLDQTSIEEI-----PPSIK-FLSRLTVLTLRDCKKLVS----LPSSISDLRSLKVLNLNGCS 580 (987)
Q Consensus 511 ~~~~l~~~~~l~~L~~L~L~~~~i~~l-----p~~i~-~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~l~~c~ 580 (987)
...+..+++|++|++++|.+... ...+. .+++|++|++++|..... ++..+..+++|++|++++|.
T Consensus 163 ----~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 163 ----ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp ----HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred ----HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 12346678888888888887632 11121 356888888888866543 56666677888888888875
Q ss_pred CCCc----c-cccccCCCCCcEeeCCCCCCCC-----CCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCC
Q 001979 581 KLEE----V-PENLGHIASLENLDLGGTAIRR-----PPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSL 650 (987)
Q Consensus 581 ~l~~----l-p~~l~~l~~L~~L~L~~~~i~~-----~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~ 650 (987)
.... + +.....+++|+.|++++|.++. ++..+..+++|++|++++|.........
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~--------------- 303 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL--------------- 303 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH---------------
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH---------------
Confidence 4322 1 2223357788888888888775 5666777888888888887532110000
Q ss_pred ccccCC-CCCCCcccEEecCCCCCCCCC---CccccCCCCCCCEEeCCCCCCccc-chhhhc-----cCCCcEEecCCCc
Q 001979 651 GFFIPS-LSGLHCLSRLDLGDCNLQEGA---IPNDLGSLSALTNLTLSRNNFFSL-PASINQ-----LSRLETLNIDYCN 720 (987)
Q Consensus 651 ~~~~~~-l~~l~~L~~L~Ls~~~l~~~~---lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~-----l~~L~~L~L~~c~ 720 (987)
.... ....++|+.|++++|.+.... ++..+..+++|++|+|++|.+... +..+.. .++|+.|++++|.
T Consensus 304 --l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 304 --LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp --HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred --HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 0000 123358888888888876432 455566778888888888887743 222322 6788888888874
Q ss_pred ccc-----cCCCC---cccccccccccc
Q 001979 721 RLK-----ALPEL---PASIDGLFAHNC 740 (987)
Q Consensus 721 ~L~-----~lp~l---p~sL~~L~~~~C 740 (987)
++ .+|.. .++|++|++.+|
T Consensus 382 -i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 382 -VSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp -CCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred -CChhhHHHHHHHHHhCCCccEEECCCC
Confidence 33 33321 245566666555
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=8.9e-21 Score=208.13 Aligned_cols=200 Identities=22% Similarity=0.260 Sum_probs=139.9
Q ss_pred CCcccEEeccCCcCCccccCcc--ccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhc-----cccceeecCCcCCccc
Q 001979 465 VPKLERLVLDGCTNLSFVHPSI--GLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNA-----KRLLQLHLDQTSIEEI 537 (987)
Q Consensus 465 l~~L~~L~L~~~~~l~~~~~~i--~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l-----~~L~~L~L~~~~i~~l 537 (987)
+++|++|+|++|.....+|..+ +.+++|++|++++|. +..+|..+ ..+ ++|++|++++|.+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--------~~l~~~~~~~L~~L~L~~N~l~~~ 164 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWL--------AELQQWLKPGLKVLSIAQAHSLNF 164 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHH--------HHHHTTCCTTCCEEEEESCSCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHH--------HHHHHhhcCCCcEEEeeCCCCccc
Confidence 4555555555555444555544 566666666666653 33335433 333 7777888888888766
Q ss_pred C-ccccCCCCCCEEeccCCCCCcc--cCccC--CCCCCCCEEEecCCCCCC--ccc-ccccCCCCCcEeeCCCCCCCCCC
Q 001979 538 P-PSIKFLSRLTVLTLRDCKKLVS--LPSSI--SDLRSLKVLNLNGCSKLE--EVP-ENLGHIASLENLDLGGTAIRRPP 609 (987)
Q Consensus 538 p-~~i~~l~~L~~L~L~~~~~l~~--lp~~l--~~l~~L~~L~l~~c~~l~--~lp-~~l~~l~~L~~L~L~~~~i~~~p 609 (987)
+ ..++.+++|++|++++|...+. +|..+ ..+++|++|++++|.... .++ ..+..+++|+.|++++|.+.+.+
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 6 5688888888999888876654 33344 788899999999886542 222 33457789999999999988754
Q ss_pred --ccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCC
Q 001979 610 --STIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSA 687 (987)
Q Consensus 610 --~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~ 687 (987)
..+..+++|+.|++++|.... .+..+. ++|+.|+|++|++.. +|. +..+++
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~~----------------------ip~~~~--~~L~~L~Ls~N~l~~--~p~-~~~l~~ 297 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLKQ----------------------VPKGLP--AKLSVLDLSYNRLDR--NPS-PDELPQ 297 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCSS----------------------CCSSCC--SEEEEEECCSSCCCS--CCC-TTTSCE
T ss_pred chhhhhhcCCCCEEECCCCccCh----------------------hhhhcc--CCceEEECCCCCCCC--Chh-HhhCCC
Confidence 456668899999999887431 122232 789999999999965 566 889999
Q ss_pred CCEEeCCCCCCcc
Q 001979 688 LTNLTLSRNNFFS 700 (987)
Q Consensus 688 L~~L~L~~n~l~~ 700 (987)
|++|+|++|.++.
T Consensus 298 L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 298 VGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEECTTCTTTC
T ss_pred CCEEeccCCCCCC
Confidence 9999999998764
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=4.8e-19 Score=206.27 Aligned_cols=217 Identities=15% Similarity=0.127 Sum_probs=183.0
Q ss_pred CCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccC
Q 001979 464 GVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKF 543 (987)
Q Consensus 464 ~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 543 (987)
.+++|++|+|++|......|..++.+++|++|+|++|......| + ..+++|++|++++|.++.+|..
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l--------~~l~~L~~L~Ls~N~l~~l~~~--- 98 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L--------ESLSTLRTLDLNNNYVQELLVG--- 98 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--C--------TTCTTCCEEECCSSEEEEEEEC---
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--c--------ccCCCCCEEEecCCcCCCCCCC---
Confidence 56699999999988777667789999999999999985443333 3 7899999999999999987753
Q ss_pred CCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCC-Ccccc-CCCCCcEE
Q 001979 544 LSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRP-PSTIV-LLENLKEL 621 (987)
Q Consensus 544 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~-p~~i~-~l~~L~~L 621 (987)
++|++|++++|...+..+. .+++|+.|++++|......|..++.+++|+.|++++|.+++. |..+. .+++|+.|
T Consensus 99 -~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 99 -PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp -TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred -CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 8999999999987765554 468899999999988777788899999999999999999974 55565 78999999
Q ss_pred EccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCccc
Q 001979 622 SFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSL 701 (987)
Q Consensus 622 ~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~l 701 (987)
+|++|..... +....+++|+.|+|++|.+.. +|..+..+++|+.|+|++|.++.+
T Consensus 175 ~Ls~N~l~~~-----------------------~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~l 229 (487)
T 3oja_A 175 NLQYNFIYDV-----------------------KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLI 229 (487)
T ss_dssp ECTTSCCCEE-----------------------ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEE
T ss_pred ecCCCccccc-----------------------cccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCccc
Confidence 9999874321 224458899999999999964 777788999999999999999999
Q ss_pred chhhhccCCCcEEecCCCccc
Q 001979 702 PASINQLSRLETLNIDYCNRL 722 (987)
Q Consensus 702 p~~i~~l~~L~~L~L~~c~~L 722 (987)
|..+..+++|+.|++++|+..
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBC
T ss_pred chhhccCCCCCEEEcCCCCCc
Confidence 999999999999999997744
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=5.6e-18 Score=182.39 Aligned_cols=215 Identities=19% Similarity=0.212 Sum_probs=158.9
Q ss_pred EEecCCCCCCCCCCCCCCCceEEEcCCCCcccccc-ccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCc
Q 001979 403 LKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQ-GVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLS 480 (987)
Q Consensus 403 L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~ 480 (987)
.+..+..+..+|..+ +.+|++|++++|.++.++. .+..+++|++|+|++|.+....+. |.++++|++|+|++|....
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 444555666677655 3578888888888887755 677888888888888877666553 7888888888888876655
Q ss_pred cccCccccCCCCcEEeCcCCCCCccCCc-hhhhhhHHHhhhccccceeecCCcCCcc--cCccccCCCCCCEEeccCCCC
Q 001979 481 FVHPSIGLLKRLKVLNMKECIRIKSFPA-EIEWASLEIVQNAKRLLQLHLDQTSIEE--IPPSIKFLSRLTVLTLRDCKK 557 (987)
Q Consensus 481 ~~~~~i~~l~~L~~L~L~~c~~l~~lp~-~i~~~~l~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~ 557 (987)
..+..+..+++|++|++++|.. ..++. .+ ..+++|++|++++|.++. +|..+..+++|++|++++|..
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNL-ASLENFPI--------GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCC-CCSTTCCC--------TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cChhhhcCCccccEEECCCCCc-cccCchhc--------ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 5556788888888888888743 33333 33 678888888888888875 678888888899999888877
Q ss_pred CcccCccCCCCCCCC----EEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCcc-ccCCCCCcEEEccCCCC
Q 001979 558 LVSLPSSISDLRSLK----VLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPST-IVLLENLKELSFHGCKG 628 (987)
Q Consensus 558 l~~lp~~l~~l~~L~----~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~-i~~l~~L~~L~L~~~~~ 628 (987)
.+..+..+..+++|+ .|++++|... .++.......+|+.|++++|.++.+|.. +..+++|+.|++++|..
T Consensus 162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CEECGGGGHHHHTCTTCCEEEECCSSCCC-EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CcCCHHHhhhhhhccccceeeecCCCccc-ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 666555666566665 8888887654 4444444455899999999999888765 47789999999988764
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=1e-17 Score=180.26 Aligned_cols=220 Identities=18% Similarity=0.169 Sum_probs=124.4
Q ss_pred EEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCC-CCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCC
Q 001979 424 KLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTP-DFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIR 502 (987)
Q Consensus 424 ~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~ 502 (987)
..+..+..+.++|..+. ++|++|+|++|.+....+ .|.++++|++|++++|......+..++.+++|++|++++|..
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 34555666667776553 567888888777666555 477777777777777654443344566666677776666533
Q ss_pred CccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCC
Q 001979 503 IKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKL 582 (987)
Q Consensus 503 l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l 582 (987)
....+..+ ..+++|++|++++|.+..++. ..+..+++|++|++++|...
T Consensus 89 ~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 89 QSLALGAF--------SGLSSLQKLVAVETNLASLEN-----------------------FPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp CEECTTTT--------TTCTTCCEEECTTSCCCCSTT-----------------------CCCTTCTTCCEEECCSSCCC
T ss_pred CccChhhh--------cCCccccEEECCCCCccccCc-----------------------hhcccCCCCCEEECcCCccc
Confidence 22222222 444555555555555444433 33445555555555554433
Q ss_pred C-cccccccCCCCCcEeeCCCCCCCCCC-ccccCCCCCc----EEEccCCCCCCCCcccccccCCCCCCCCCCCccccCC
Q 001979 583 E-EVPENLGHIASLENLDLGGTAIRRPP-STIVLLENLK----ELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPS 656 (987)
Q Consensus 583 ~-~lp~~l~~l~~L~~L~L~~~~i~~~p-~~i~~l~~L~----~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 656 (987)
. .+|..+..+++|+.|++++|.+++++ ..+..+++|+ .|++++|.... .++.
T Consensus 138 ~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~----------------------~~~~ 195 (276)
T 2z62_A 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF----------------------IQPG 195 (276)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE----------------------ECTT
T ss_pred eecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc----------------------cCcc
Confidence 3 24555555555555555555555443 2344444444 56666554321 1111
Q ss_pred CCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCc
Q 001979 657 LSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFF 699 (987)
Q Consensus 657 l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~ 699 (987)
.....+|+.|++++|.+.. ..+..+..+++|+.|+|++|.+.
T Consensus 196 ~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 196 AFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SSCSCCEEEEECCSSCCSC-CCTTTTTTCCSCCEEECCSSCBC
T ss_pred ccCCCcccEEECCCCceee-cCHhHhcccccccEEEccCCccc
Confidence 2223367888888888764 23344678888888888888776
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=3.9e-17 Score=175.05 Aligned_cols=172 Identities=19% Similarity=0.255 Sum_probs=88.2
Q ss_pred ccceEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccc-ccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCC
Q 001979 399 ELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQ-GVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGC 476 (987)
Q Consensus 399 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~ 476 (987)
..+.+++.++.+..+|..+. .++++|++++|.++.++. .+..+++|++|+|++|.+....+. |.++++|++|+|++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 34556666666666665442 456666666666666643 566666666666666665544433 455666666666665
Q ss_pred cCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCcc-ccCCCCCCEEeccCC
Q 001979 477 TNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPS-IKFLSRLTVLTLRDC 555 (987)
Q Consensus 477 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~ 555 (987)
......+..+..+++|++|++++|. ++.+|... +..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRV-------FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTT-------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCcCCHhHcccccCCCEEECCCCc-cCeeCHHH-------hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 4333333344555566666665552 22232211 13444555555555555444433 344444444444444
Q ss_pred CCCcccCccCCCCCCCCEEEecCC
Q 001979 556 KKLVSLPSSISDLRSLKVLNLNGC 579 (987)
Q Consensus 556 ~~l~~lp~~l~~l~~L~~L~l~~c 579 (987)
......+..+..+++|+.|++++|
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 168 QLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCcEeChhHhccCCCcCEEECCCC
Confidence 333322223344444444444444
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=3.5e-17 Score=177.01 Aligned_cols=128 Identities=18% Similarity=0.181 Sum_probs=59.8
Q ss_pred CCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhh
Q 001979 440 QNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQ 519 (987)
Q Consensus 440 ~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~ 519 (987)
.++++|+.++++++.+...++.+. ++|++|+|++|......+..+..+++|++|++++|. ++.++.. .
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---------~ 74 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD---------G 74 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC---------S
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC---------C
Confidence 345555555555554443332232 455555665555444444455555666666665552 3333221 2
Q ss_pred hccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCC
Q 001979 520 NAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGC 579 (987)
Q Consensus 520 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c 579 (987)
.+++|++|++++|.++.+|..+..+++|++|++++|...+..|..|..+++|+.|++++|
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 444555555555555555544444444555544444333222233333444444444433
No 77
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=7.3e-20 Score=220.24 Aligned_cols=319 Identities=13% Similarity=0.101 Sum_probs=216.4
Q ss_pred cCCCCCcEEEecCcccCCC----CCcC---CcccceEEecCCCCCCCC-----CCC-CCCCceEEEcCCCCccccccccC
Q 001979 374 SRMKNLRLLKIRDVCLRHG----IEYL---PDELRLLKWHGYPLRSLP-----SNF-QPERLFKLNICYSLVEQLWQGVQ 440 (987)
Q Consensus 374 ~~~~~Lr~L~l~~~~l~~~----~~~l---~~~Lr~L~~~~~~l~~lp-----~~~-~~~~L~~L~l~~~~i~~l~~~~~ 440 (987)
.++++|+.|++++|.+.+. +..+ .+.|+.|++.++.+..+. ..+ .+++|++|+++++.+..++..+.
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 4788899999988876442 1111 247888888888776433 222 56788899998888888888888
Q ss_pred CCCCCCEEecCCCCCCCC----CCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHH
Q 001979 441 NMRHLKFIKLSHSVHLTK----TPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLE 516 (987)
Q Consensus 441 ~l~~L~~L~Ls~~~~~~~----~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~ 516 (987)
.+++|+.|++++...... ...+..+++|+.|+++++ ....+|..+..+++|++|++++|. +.... ...
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~------~~~ 312 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETED------HCT 312 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHH------HHH
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHH------HHH
Confidence 888899998875432211 223677888888888874 445667777788889999998885 22110 012
Q ss_pred HhhhccccceeecCCcCCc--ccCccccCCCCCCEEeccC----------CCCCcc--cCccCCCCCCCCEEEecCCCCC
Q 001979 517 IVQNAKRLLQLHLDQTSIE--EIPPSIKFLSRLTVLTLRD----------CKKLVS--LPSSISDLRSLKVLNLNGCSKL 582 (987)
Q Consensus 517 ~~~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~----------~~~l~~--lp~~l~~l~~L~~L~l~~c~~l 582 (987)
.+..+++|+.|+++ +.+. .++.....+++|++|++++ |..... ++.....+++|+.|+++.+...
T Consensus 313 ~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 313 LIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391 (592)
T ss_dssp HHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred HHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCcc
Confidence 34778888888888 4333 4444456788899999884 544432 2222345788888888655554
Q ss_pred CcccccccC-CCCCcEeeCC----CCCCCCCCc------cccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCc
Q 001979 583 EEVPENLGH-IASLENLDLG----GTAIRRPPS------TIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLG 651 (987)
Q Consensus 583 ~~lp~~l~~-l~~L~~L~L~----~~~i~~~p~------~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 651 (987)
...+..+.. +++|+.|+++ .+.+++.|. .+..+++|+.|++++|..... +
T Consensus 392 ~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~-------------------~ 452 (592)
T 3ogk_B 392 NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT-------------------D 452 (592)
T ss_dssp HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC-------------------H
T ss_pred HHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc-------------------H
Confidence 444455544 7888888885 556665432 256688889998877652100 0
Q ss_pred cccCC-CCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCc--ccchhhhccCCCcEEecCCCc
Q 001979 652 FFIPS-LSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFF--SLPASINQLSRLETLNIDYCN 720 (987)
Q Consensus 652 ~~~~~-l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~ 720 (987)
..+.. ...+++|+.|++++|.+++..++..+.++++|++|+|++|.++ .++..+..+++|+.|+|++|+
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 11111 1236789999999988865556666788889999999999876 356566788899999999887
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=2.8e-17 Score=177.81 Aligned_cols=194 Identities=18% Similarity=0.173 Sum_probs=121.4
Q ss_pred ccceEEecCCCCCCCCCCCCCCCceEEEcCCCCcccc-ccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCc
Q 001979 399 ELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQL-WQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCT 477 (987)
Q Consensus 399 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 477 (987)
+++.+++.++.+..+|..+. .+++.|++++|.+..+ +..+..+++|++|+|++|.+.... ..
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~--------------- 73 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VD--------------- 73 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CC---------------
T ss_pred CccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc-CC---------------
Confidence 45566666666666665442 4556666666665554 234555555555555555433222 12
Q ss_pred CCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccC-ccccCCCCCCEEeccCCC
Q 001979 478 NLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIP-PSIKFLSRLTVLTLRDCK 556 (987)
Q Consensus 478 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~ 556 (987)
+.+++|++|++++| .++.+|..+ ..+++|++|++++|.++.+| ..+..+++|++|++++|.
T Consensus 74 ---------~~l~~L~~L~Ls~N-~l~~l~~~~--------~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 74 ---------GTLPVLGTLDLSHN-QLQSLPLLG--------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp ---------SCCTTCCEEECCSS-CCSSCCCCT--------TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred ---------CCCCcCCEEECCCC-cCCcCchhh--------ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 34455555555554 333444433 45556666666666666655 346677777777777776
Q ss_pred CCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCC
Q 001979 557 KLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCK 627 (987)
Q Consensus 557 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~ 627 (987)
.....+..+..+++|+.|++++|......+..+..+++|+.|++++|.++.+|..+..+.+|+.|++++|+
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 55544445677888888888887654333344677888888888888888888888888888888888876
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=8.6e-17 Score=172.34 Aligned_cols=199 Identities=20% Similarity=0.253 Sum_probs=167.1
Q ss_pred CCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCC-CCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCc
Q 001979 420 ERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTP-DFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMK 498 (987)
Q Consensus 420 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~ 498 (987)
...+.++++++.++.+|..+. ++|+.|+|++|.+....+ .|.++++|++|+|++|......+..+..+++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 357889999999999998765 789999999999877766 49999999999999976554333446889999999999
Q ss_pred CCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCcc-ccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEec
Q 001979 499 ECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPS-IKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLN 577 (987)
Q Consensus 499 ~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~ 577 (987)
+| .+..+|... +..+++|++|++++|.++.+|.. +..+++|++|++++|......+..+..+++|+.|+++
T Consensus 94 ~n-~l~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 94 DN-KLQALPIGV-------FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp SS-CCCCCCTTT-------TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CC-cCCcCCHhH-------cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 98 455666533 47899999999999999988764 7899999999999997665555558899999999999
Q ss_pred CCCCCCcccccccCCCCCcEeeCCCCCCCCCCc-cccCCCCCcEEEccCCCC
Q 001979 578 GCSKLEEVPENLGHIASLENLDLGGTAIRRPPS-TIVLLENLKELSFHGCKG 628 (987)
Q Consensus 578 ~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~-~i~~l~~L~~L~L~~~~~ 628 (987)
+|......+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|+.
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 987665555678999999999999999998876 477899999999999873
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=1.1e-18 Score=193.90 Aligned_cols=195 Identities=14% Similarity=0.188 Sum_probs=102.1
Q ss_pred ceEEEcCCCCccccccccCCC--CCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCcc-ccCccccCCCCcEEeCc
Q 001979 422 LFKLNICYSLVEQLWQGVQNM--RHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSF-VHPSIGLLKRLKVLNMK 498 (987)
Q Consensus 422 L~~L~l~~~~i~~l~~~~~~l--~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-~~~~i~~l~~L~~L~L~ 498 (987)
++.++++++.+. +..+..+ ++++.|++++|.+....+.+..+++|++|++++|..... ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 455666655554 3334444 677777777777666666666677777777777664433 55566677777777777
Q ss_pred CCCCCccCCchhhhhhHHHhhhccccceeecCCc-CCc--ccCccccCCCCCCEEeccCC-CCCcc-cCccCCCCC-CCC
Q 001979 499 ECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQT-SIE--EIPPSIKFLSRLTVLTLRDC-KKLVS-LPSSISDLR-SLK 572 (987)
Q Consensus 499 ~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~-~i~--~lp~~i~~l~~L~~L~L~~~-~~l~~-lp~~l~~l~-~L~ 572 (987)
+|......|.. +..+++|++|++++| .++ .++..+..+++|++|++++| ..... ++..+..++ +|+
T Consensus 127 ~~~l~~~~~~~--------l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 127 GLRLSDPIVNT--------LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp TCBCCHHHHHH--------HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CcccCHHHHHH--------HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 76432222222 244555555555555 444 24444555555555555555 22221 333344455 555
Q ss_pred EEEecCCC--CC-CcccccccCCCCCcEeeCCCCC-CC-CCCccccCCCCCcEEEccCC
Q 001979 573 VLNLNGCS--KL-EEVPENLGHIASLENLDLGGTA-IR-RPPSTIVLLENLKELSFHGC 626 (987)
Q Consensus 573 ~L~l~~c~--~l-~~lp~~l~~l~~L~~L~L~~~~-i~-~~p~~i~~l~~L~~L~L~~~ 626 (987)
+|++++|. .. ..+|..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 55555542 11 2234444444555555555444 22 22333344444444444443
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=2.7e-17 Score=172.90 Aligned_cols=203 Identities=21% Similarity=0.268 Sum_probs=161.2
Q ss_pred CCCCCCCCCCCCceEEEcCCCCcccccc-ccCCCCCCCEEecCCCC-CCCCCC-CCCCCCcccEEeccCCcCCcccc-Cc
Q 001979 410 LRSLPSNFQPERLFKLNICYSLVEQLWQ-GVQNMRHLKFIKLSHSV-HLTKTP-DFTGVPKLERLVLDGCTNLSFVH-PS 485 (987)
Q Consensus 410 l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~Ls~~~-~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~-~~ 485 (987)
+..+|. -+.+|++|++++|.++.++. .+..+++|++|++++|. +....+ .|.++++|++|++++|+.+..++ ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 677777 45588899999999888876 67889999999999997 544444 38889999999999855555555 46
Q ss_pred cccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccc---eeecCCc-CCcccCcc-ccCCCCCC-EEeccCCCCCc
Q 001979 486 IGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLL---QLHLDQT-SIEEIPPS-IKFLSRLT-VLTLRDCKKLV 559 (987)
Q Consensus 486 i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~---~L~L~~~-~i~~lp~~-i~~l~~L~-~L~L~~~~~l~ 559 (987)
+..+++|++|++++|. ++.+|. + ..+++|+ +|++++| .++.+|.. +..+++|+ .|++++|...
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~-~--------~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~- 169 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPD-L--------TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT- 169 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCC-C--------TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-
T ss_pred hCCCCCCCEEeCCCCC-Cccccc-c--------ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-
Confidence 7889999999999874 555775 3 5666776 9999999 89988764 88899999 9999988765
Q ss_pred ccCccCCCCCCCCEEEecCCCCCCcc-cccccCC-CCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCC
Q 001979 560 SLPSSISDLRSLKVLNLNGCSKLEEV-PENLGHI-ASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCK 627 (987)
Q Consensus 560 ~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l-~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~ 627 (987)
.+|......++|+.|++++|..+..+ +..+..+ ++|+.|++++|.++.+|.. .+++|+.|++.++.
T Consensus 170 ~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 66665444589999999998645565 4568888 9999999999999998876 78899999998764
No 82
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=3e-19 Score=214.83 Aligned_cols=207 Identities=15% Similarity=0.043 Sum_probs=103.0
Q ss_pred hhccccceeecCCcCCc--ccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecC----------CCCCCc--
Q 001979 519 QNAKRLLQLHLDQTSIE--EIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNG----------CSKLEE-- 584 (987)
Q Consensus 519 ~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~----------c~~l~~-- 584 (987)
..+++|++|++++|.+. .++..+..+++|++|+++++-....++..+..+++|++|++++ |..+..
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~ 369 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH
Confidence 44555555555555543 2222344555555555553222222222233455555555553 333322
Q ss_pred ccccccCCCCCcEeeCCCCCCCCC-CccccC-CCCCcEEEccCCC---CCCCCcccccccCCCCCCCCCCCccccCCCCC
Q 001979 585 VPENLGHIASLENLDLGGTAIRRP-PSTIVL-LENLKELSFHGCK---GQRKSWSSLIWLPFYPRANRDSLGFFIPSLSG 659 (987)
Q Consensus 585 lp~~l~~l~~L~~L~L~~~~i~~~-p~~i~~-l~~L~~L~L~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 659 (987)
++.....+++|+.|+++.+.++.. +..+.. +++|+.|++++|. .....+. .......+.+
T Consensus 370 ~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~---------------~~~~~~~~~~ 434 (592)
T 3ogk_B 370 LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL---------------DNGVRSLLIG 434 (592)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC---------------HHHHHHHHHH
T ss_pred HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH---------------HHHHHHHHHh
Confidence 222233455556665544444421 222222 5556666665322 1100000 0001122445
Q ss_pred CCcccEEecCCCC--CCCCCCccccCCCCCCCEEeCCCCCCc--ccchhhhccCCCcEEecCCCccccc--CCC---Ccc
Q 001979 660 LHCLSRLDLGDCN--LQEGAIPNDLGSLSALTNLTLSRNNFF--SLPASINQLSRLETLNIDYCNRLKA--LPE---LPA 730 (987)
Q Consensus 660 l~~L~~L~Ls~~~--l~~~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~--lp~---lp~ 730 (987)
+++|+.|++++|. +.+..+......+++|+.|+|++|.++ .++..+..+++|+.|+|++|+ ++. ++. -.+
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLP 513 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCS
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcC
Confidence 7788888887654 332222222334778888888888876 356666778888888888887 322 221 134
Q ss_pred ccccccccccc
Q 001979 731 SIDGLFAHNCT 741 (987)
Q Consensus 731 sL~~L~~~~C~ 741 (987)
+|+.|++.+|.
T Consensus 514 ~L~~L~ls~n~ 524 (592)
T 3ogk_B 514 SLRYLWVQGYR 524 (592)
T ss_dssp SCCEEEEESCB
T ss_pred ccCeeECcCCc
Confidence 66666666665
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=8.1e-17 Score=175.92 Aligned_cols=187 Identities=18% Similarity=0.246 Sum_probs=102.1
Q ss_pred ccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcC
Q 001979 399 ELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTN 478 (987)
Q Consensus 399 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~ 478 (987)
.|+.|++.++.+..+|....+++|++|++++|.+..++. +..+++|++|+|++|.+.. ++.
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~----------------- 102 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VSA----------------- 102 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CGG-----------------
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-chh-----------------
Confidence 455555555555555532244555555555555554444 4445555555555544322 233
Q ss_pred CccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCC
Q 001979 479 LSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKL 558 (987)
Q Consensus 479 l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l 558 (987)
+..+++|++|++++|. ++.+|. +..+++|+.|++++|.++.++. +..+++|++|++++|...
T Consensus 103 -------~~~l~~L~~L~l~~n~-l~~~~~---------l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 103 -------IAGLQSIKTLDLTSTQ-ITDVTP---------LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp -------GTTCTTCCEEECTTSC-CCCCGG---------GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred -------hcCCCCCCEEECCCCC-CCCchh---------hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCC
Confidence 4445555555555542 222322 1455555555555555555544 556666666666665433
Q ss_pred cccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCC
Q 001979 559 VSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCK 627 (987)
Q Consensus 559 ~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~ 627 (987)
. ++. +..+++|+.|++++|.. ..++. +..+++|+.|++++|.+.+++. +..+++|+.|++++|.
T Consensus 165 ~-~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 165 D-LTP-LANLSKLTTLKADDNKI-SDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp C-CGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred C-Chh-hcCCCCCCEEECCCCcc-CcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 2 333 55666666666666643 33333 5667777777777777776663 6677777777777765
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=1.1e-16 Score=171.70 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=113.8
Q ss_pred ccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCc
Q 001979 399 ELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCT 477 (987)
Q Consensus 399 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~ 477 (987)
.++.|.+.++.+..++....+++|++|++++|.++.++ .+..+++|++|+|++|.+....+. +.++++|++|++++|.
T Consensus 42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence 34444444445555544335566666777666666653 566667777777777666555444 5666777777777665
Q ss_pred CCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCcc-ccCCCCCCEEeccCCC
Q 001979 478 NLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPS-IKFLSRLTVLTLRDCK 556 (987)
Q Consensus 478 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~ 556 (987)
.....+..++.+++|++|++++| .++.+|... +..+++|+.|++++|.++.+|.. +..+++|++|++++|.
T Consensus 121 l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 121 LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGV-------FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT-------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHHHhccCCCCCEEECCCC-ccCccCHHH-------hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 44444444566666777776666 334444322 24566666666666666655543 4556666666666665
Q ss_pred CCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCC-CCCccccC
Q 001979 557 KLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIR-RPPSTIVL 614 (987)
Q Consensus 557 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~~p~~i~~ 614 (987)
..+..|..+..+++|+.|++++|... +.+++|+.|+++.|.+. .+|.+++.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence 55544444556666666666665432 22445555555555554 23444433
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=1.3e-16 Score=174.24 Aligned_cols=167 Identities=17% Similarity=0.301 Sum_probs=117.6
Q ss_pred hcCCCCCcEEEecCcccCC--CCCcCCcccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEec
Q 001979 373 FSRMKNLRLLKIRDVCLRH--GIEYLPDELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKL 450 (987)
Q Consensus 373 f~~~~~Lr~L~l~~~~l~~--~~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~L 450 (987)
+..+++|+.|+++++.+.. ++.. .+.|+.|++.++.+..+|....+.+|++|++++|.++.++ .+..+++|++|+|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~-l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQY-LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGG-CTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHHcCCcCEEEeeCCCccCchhhhc-cCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 4467899999999987654 2222 3589999999999999998448999999999999999886 6889999999999
Q ss_pred CCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecC
Q 001979 451 SHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLD 530 (987)
Q Consensus 451 s~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~ 530 (987)
++|.+.. ++.+..+++|++|++++|... .++. ++.+++|++|++++| .+..++. + ..+++|+.|+++
T Consensus 115 ~~n~l~~-~~~l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l--------~~l~~L~~L~l~ 181 (308)
T 1h6u_A 115 TSTQITD-VTPLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNA-QVSDLTP-L--------ANLSKLTTLKAD 181 (308)
T ss_dssp TTSCCCC-CGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSS-CCCCCGG-G--------TTCTTCCEEECC
T ss_pred CCCCCCC-chhhcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCC-cCCCChh-h--------cCCCCCCEEECC
Confidence 9998655 445788888888888887543 3332 666677777777766 3333332 2 455555555555
Q ss_pred CcCCcccCccccCCCCCCEEeccCC
Q 001979 531 QTSIEEIPPSIKFLSRLTVLTLRDC 555 (987)
Q Consensus 531 ~~~i~~lp~~i~~l~~L~~L~L~~~ 555 (987)
+|.++.++. +..+++|++|++++|
T Consensus 182 ~n~l~~~~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 182 DNKISDISP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECTTS
T ss_pred CCccCcChh-hcCCCCCCEEEccCC
Confidence 555555443 444444444444444
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=9e-17 Score=168.86 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=38.1
Q ss_pred CcccEEecCCCC-CCCCCCccccCCC-CCCCEEeCCCCCCcccchhhhccCCCcEEecCCCcc
Q 001979 661 HCLSRLDLGDCN-LQEGAIPNDLGSL-SALTNLTLSRNNFFSLPASINQLSRLETLNIDYCNR 721 (987)
Q Consensus 661 ~~L~~L~Ls~~~-l~~~~lp~~l~~l-~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 721 (987)
++|+.|++++|. +.. ..+..+..+ ++|+.|+|++|+++.+|.. .+++|+.|+++++..
T Consensus 179 ~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CEEEEEECTTCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred CCCCEEEcCCCCCccc-CCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 456666666663 542 123456677 7888888888888877755 677888888877643
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=3.2e-17 Score=175.81 Aligned_cols=208 Identities=17% Similarity=0.174 Sum_probs=139.9
Q ss_pred EecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCcccc
Q 001979 404 KWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVH 483 (987)
Q Consensus 404 ~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 483 (987)
.+.+..+..+.....+.+|+.|+++++.++.++ ++..+++|++|+|++|.+.. ++.+..+++|++|++++|......+
T Consensus 25 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~ 102 (272)
T 3rfs_A 25 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPN 102 (272)
T ss_dssp HHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCT
T ss_pred HhcCcccccccccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccCh
Confidence 333444443333335677888888888887664 46778888888888887654 4567788888888888876554444
Q ss_pred CccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCcc-ccCCCCCCEEeccCCCCCcccC
Q 001979 484 PSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPS-IKFLSRLTVLTLRDCKKLVSLP 562 (987)
Q Consensus 484 ~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp 562 (987)
..++.+++|++|++++|. +..+|... +..+++|++|++++|.++.+|.. +..+++|++|++++|...+..+
T Consensus 103 ~~~~~l~~L~~L~L~~n~-l~~~~~~~-------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVENQ-LQSLPDGV-------FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCCCTTT-------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred hHhcCCcCCCEEECCCCc-CCccCHHH-------hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 456778888888888874 44444322 26677788888888877776654 4677777777777776655555
Q ss_pred ccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCC
Q 001979 563 SSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCK 627 (987)
Q Consensus 563 ~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~ 627 (987)
..+..+++|+.|++++|......|..+..+++|+.|++++|.+.. .+++|+.|++..|.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINK 233 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC------CTTTTHHHHHHHHH
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc------cCcHHHHHHHHHHh
Confidence 556777777777777776655555556777777777777776542 24456666665544
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=2.7e-18 Score=190.65 Aligned_cols=198 Identities=18% Similarity=0.221 Sum_probs=104.1
Q ss_pred CceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCC-CCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCc
Q 001979 421 RLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTK-TPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMK 498 (987)
Q Consensus 421 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~-~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~ 498 (987)
+++.|++++|.+...+..+..+++|++|+|++|.+... ++. +..+++|++|+|++|......+..++.+++|++|+++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 44444444444444444444455555555555543322 222 4455555555555554433444455555666666666
Q ss_pred CCCCCcc--CCchhhhhhHHHhhhccccceeecCCc-CCcc--cCccccCCC-CCCEEeccCCC--CC-cccCccCCCCC
Q 001979 499 ECIRIKS--FPAEIEWASLEIVQNAKRLLQLHLDQT-SIEE--IPPSIKFLS-RLTVLTLRDCK--KL-VSLPSSISDLR 569 (987)
Q Consensus 499 ~c~~l~~--lp~~i~~~~l~~~~~l~~L~~L~L~~~-~i~~--lp~~i~~l~-~L~~L~L~~~~--~l-~~lp~~l~~l~ 569 (987)
+|..++. ++. .+..+++|++|++++| .++. ++..+..++ +|++|++++|. .. ..+|..+..++
T Consensus 151 ~~~~l~~~~l~~--------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 222 (336)
T 2ast_B 151 GCSGFSEFALQT--------LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222 (336)
T ss_dssp TCBSCCHHHHHH--------HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHH--------HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence 5533321 222 1245566666666666 5552 455556666 66666666663 22 33444455666
Q ss_pred CCCEEEecCCCC-CCcccccccCCCCCcEeeCCCCC-CCC-CCccccCCCCCcEEEccCC
Q 001979 570 SLKVLNLNGCSK-LEEVPENLGHIASLENLDLGGTA-IRR-PPSTIVLLENLKELSFHGC 626 (987)
Q Consensus 570 ~L~~L~l~~c~~-l~~lp~~l~~l~~L~~L~L~~~~-i~~-~p~~i~~l~~L~~L~L~~~ 626 (987)
+|+.|++++|.. ....+..+..+++|+.|++++|. +.. ....+..+++|+.|++++|
T Consensus 223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 667777766663 33455566666777777776664 110 0113455666666666665
No 89
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.70 E-value=2.8e-16 Score=175.39 Aligned_cols=295 Identities=13% Similarity=0.070 Sum_probs=179.0
Q ss_pred CCCCCCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhh--hccC
Q 001979 2 SHTLLSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVS--QTRG 79 (987)
Q Consensus 2 ~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~--~~~~ 79 (987)
+|.++..++.||||+.++++|.+++..+ +++.|+|++|+|||||+++++++. ..+|++...... ....
T Consensus 4 ~~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 4 DLRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------PGILIDCRELYAERGHIT 73 (350)
T ss_dssp CCSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------SEEEEEHHHHHHTTTCBC
T ss_pred CCCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------CcEEEEeecccccccCCC
Confidence 5667778889999999999999998642 689999999999999999999874 256665322110 0113
Q ss_pred HHHHHHHHHHHHhc---------------CCCc--ccccchhhHHHHHHHhcC-CceEEEEeCCCChH--------H-HH
Q 001979 80 LVALQEQLVSEILL---------------DKNV--KIWDVHKGCHMIRIKLRH-KRVLLVIDDVDEFD--------Q-LQ 132 (987)
Q Consensus 80 ~~~l~~~ll~~l~~---------------~~~~--~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~~~--------~-~~ 132 (987)
...+...+...+.. .... ...+..+....+.+..+. ++++|||||++... + +.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 33444444433211 0000 012233334444444432 48999999997632 2 23
Q ss_pred HHhcCCCCCCCCcEEEEEeCCcccccc-----------cC-cCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHH
Q 001979 133 ALAGQRDWFGLGSRIIITTRDRHLLVR-----------CD-VEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHS 200 (987)
Q Consensus 133 ~l~~~~~~~~~gs~IiiTtR~~~v~~~-----------~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~ 200 (987)
.+..... ..++.++|+|++....... .+ ....+++.+|+.+|+.+++........... ..+.+.+
T Consensus 154 ~L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~ 230 (350)
T 2qen_A 154 LFAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEE 230 (350)
T ss_dssp HHHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHH
T ss_pred HHHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHH
Confidence 3322211 1257889999887532111 11 124799999999999999986542211111 1356889
Q ss_pred HHHHhCCCchhHHHHhhhhcC-CCHHHHHHHHHhhhcCCCchHHHHHHHhHhCc---cHHHHHHHhheeeccCCCCHHHH
Q 001979 201 MVNYADGLPLALEILGSFLFA-RSKAEWKDALDRLKYVPDQKIFEILKISYDGL---QETEKKIFLDIACFFKGKDKDQV 276 (987)
Q Consensus 201 i~~~~~G~PLal~~l~~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~la~f~~~~~~~~l 276 (987)
+++.++|+|+++..++..+.. .+...+. ..+. +.+...+.-.+..+ ++..+.++..+|+ .......+
T Consensus 231 i~~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l 301 (350)
T 2qen_A 231 AVELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLI 301 (350)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHhccccHhHHH---HHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHH
Confidence 999999999999999876432 2222221 1111 11111222222333 6888999999998 33455666
Q ss_pred HHHHHhC--CCC---ccccchhhhcccceEEeCCeEEe-cHHHHHHHH
Q 001979 277 RELLDSC--DFY---PEIGISVLIDKCIITLSNNILCM-HDLIQDMGR 318 (987)
Q Consensus 277 ~~~~~~~--~~~---~~~~~~~L~~~~Li~~~~~~~~m-Hdll~~~~~ 318 (987)
...+... +.. ....++.|.+.++|...++.|.+ |++++++.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 302 RDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 6555322 222 23568899999999987777765 777776643
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=2.4e-19 Score=215.87 Aligned_cols=351 Identities=15% Similarity=0.109 Sum_probs=187.7
Q ss_pred hcCCCCCcEEEecCcccCCC-CCcC---CcccceEEecCC-CCCC--CCCCC-CCCCceEEEcCCCCccc-----ccccc
Q 001979 373 FSRMKNLRLLKIRDVCLRHG-IEYL---PDELRLLKWHGY-PLRS--LPSNF-QPERLFKLNICYSLVEQ-----LWQGV 439 (987)
Q Consensus 373 f~~~~~Lr~L~l~~~~l~~~-~~~l---~~~Lr~L~~~~~-~l~~--lp~~~-~~~~L~~L~l~~~~i~~-----l~~~~ 439 (987)
+..+++|+.|+++++.+... +..+ .++|+.|++.+| .+.. ++... .+++|++|++++|.+.. ++...
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 34567778888777665431 1111 247777777776 3322 33222 56788888888877553 33334
Q ss_pred CCCCCCCEEecCCCCCCCCCCC------CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCC-----------
Q 001979 440 QNMRHLKFIKLSHSVHLTKTPD------FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIR----------- 502 (987)
Q Consensus 440 ~~l~~L~~L~Ls~~~~~~~~~~------~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~----------- 502 (987)
..+++|+.|++++|. ..+.. +..+++|++|++++|.....++..+..+++|+.|+++.|..
T Consensus 181 ~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp TTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred hcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 467788888888876 11211 23468888888888866666777777788888887665531
Q ss_pred --------CccCCc--hhhhhhH-HHhhhccccceeecCCcCCc--ccCccccCCCCCCEEeccCCCCCcccCccCCCCC
Q 001979 503 --------IKSFPA--EIEWASL-EIVQNAKRLLQLHLDQTSIE--EIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLR 569 (987)
Q Consensus 503 --------l~~lp~--~i~~~~l-~~~~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~ 569 (987)
++.+.. ......+ .....+++|++|++++|.+. .++..+..+++|+.|++++|.....++.....++
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred HHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCC
Confidence 111100 0000000 11234556666666665544 1222344556666666665511111222122355
Q ss_pred CCCEEEecCC--------CCCCc--ccccccCCCCCcEeeCCCCCCCCC-Cccc-cCCCCCcEEEcc-----CCCCCCCC
Q 001979 570 SLKVLNLNGC--------SKLEE--VPENLGHIASLENLDLGGTAIRRP-PSTI-VLLENLKELSFH-----GCKGQRKS 632 (987)
Q Consensus 570 ~L~~L~l~~c--------~~l~~--lp~~l~~l~~L~~L~L~~~~i~~~-p~~i-~~l~~L~~L~L~-----~~~~~~~~ 632 (987)
+|+.|++.+| ..+.. +......+++|+.|.+..+.++.. +..+ ..+++|+.|+++ +|......
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 6666666332 11111 111112355666665555554421 1122 245666666666 22222110
Q ss_pred cccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcc--cchhhhccCC
Q 001979 633 WSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFS--LPASINQLSR 710 (987)
Q Consensus 633 ~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~--lp~~i~~l~~ 710 (987)
+. .......+..+++|+.|++++ .+.+..++.....+++|+.|+|++|.++. ++.....+++
T Consensus 419 ~~---------------~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 482 (594)
T 2p1m_B 419 PL---------------DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS 482 (594)
T ss_dssp CT---------------HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTT
T ss_pred ch---------------hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCC
Confidence 00 000111245678899999977 55432222222237889999999998862 3333367899
Q ss_pred CcEEecCCCccccc-----CCCCcccccccccccccc
Q 001979 711 LETLNIDYCNRLKA-----LPELPASIDGLFAHNCTS 742 (987)
Q Consensus 711 L~~L~L~~c~~L~~-----lp~lp~sL~~L~~~~C~~ 742 (987)
|+.|+|++|+. +. +..-.++|+.|++.+|+.
T Consensus 483 L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 483 LRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 99999999875 21 111235777777777753
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=2.6e-16 Score=175.42 Aligned_cols=215 Identities=22% Similarity=0.297 Sum_probs=166.2
Q ss_pred ceEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccc-ccCCCCCCCEEecCCCCCCCCCCC--CCCCCcccEEeccCCc
Q 001979 401 RLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQ-GVQNMRHLKFIKLSHSVHLTKTPD--FTGVPKLERLVLDGCT 477 (987)
Q Consensus 401 r~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~--~~~l~~L~~L~L~~~~ 477 (987)
+.++.+++.++++|..+ +.++++|+|++|.|+.+|. .+.++++|++|+|++|.+...+|. |.++++|.++...+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45677788888898876 5789999999999999986 578999999999999998776664 7889988876655555
Q ss_pred CCccc-cCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCC-cCCcccCcc-ccCC-CCCCEEecc
Q 001979 478 NLSFV-HPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQ-TSIEEIPPS-IKFL-SRLTVLTLR 553 (987)
Q Consensus 478 ~l~~~-~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~-~~i~~lp~~-i~~l-~~L~~L~L~ 553 (987)
.+..+ |..+..+++|++|++++| .+..+|... +....++..|++.+ +.+..+|.. +..+ ..++.|+++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~-------~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVH-------KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCT-------TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred cccccCchhhhhcccccccccccc-ccccCCchh-------hcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 56655 556889999999999987 455555432 13555677788855 578877753 4554 468899999
Q ss_pred CCCCCcccCccCCCCCCCCEEEecCCCCCCcccc-cccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCC
Q 001979 554 DCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPE-NLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCK 627 (987)
Q Consensus 554 ~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~ 627 (987)
+|.. ..+|.......+|+.|++.++..++.+|. .+..+++|+.|++++|.++.+|.. .+.+|+.|.+.++.
T Consensus 163 ~N~i-~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 163 KNGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTY 234 (350)
T ss_dssp SSCC-CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCT
T ss_pred cccc-cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCC
Confidence 8765 45666666778899999998888888886 578999999999999999999874 36778888877664
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.69 E-value=2.4e-18 Score=195.04 Aligned_cols=262 Identities=15% Similarity=0.118 Sum_probs=148.0
Q ss_pred CceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCC-----CCCCCCcccEEeccCCcCCccccCccccCCCCcEE
Q 001979 421 RLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTP-----DFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVL 495 (987)
Q Consensus 421 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-----~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L 495 (987)
.|+...+....+..++..+..+++|++|+|++|.+....+ .+..+++|++|+|++|..-.
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~--------------- 74 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR--------------- 74 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTS---------------
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCc---------------
Confidence 4444445555556666777777777777777776543311 14455555555555542110
Q ss_pred eCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcc-----cCccccCCCCCCEEeccCCCCCcc----cCccCC
Q 001979 496 NMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEE-----IPPSIKFLSRLTVLTLRDCKKLVS----LPSSIS 566 (987)
Q Consensus 496 ~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~----lp~~l~ 566 (987)
....+|..+. .-...+..+++|++|+|++|.+.. +|..+..+++|++|+|++|..... ++..+.
T Consensus 75 ------l~~~~~~~~~-~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 147 (386)
T 2ca6_A 75 ------VKDEIPEALR-LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147 (386)
T ss_dssp ------CGGGSHHHHH-HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred ------cccchhHHHH-HHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHH
Confidence 0011121110 000122344555555555555443 444555566666666666554322 222222
Q ss_pred CC---------CCCCEEEecCCCCC-Cccc---ccccCCCCCcEeeCCCCCCC--C----CCccccCCCCCcEEEccCCC
Q 001979 567 DL---------RSLKVLNLNGCSKL-EEVP---ENLGHIASLENLDLGGTAIR--R----PPSTIVLLENLKELSFHGCK 627 (987)
Q Consensus 567 ~l---------~~L~~L~l~~c~~l-~~lp---~~l~~l~~L~~L~L~~~~i~--~----~p~~i~~l~~L~~L~L~~~~ 627 (987)
.+ ++|++|++++|... ..+| ..+..+++|+.|++++|.+. + .+..+..+++|+.|+|++|.
T Consensus 148 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp HHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred HHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence 22 66677777666544 2333 34556667777777777666 1 23356677777777777765
Q ss_pred CCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCC---CCcccc--CCCCCCCEEeCCCCCCcc--
Q 001979 628 GQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEG---AIPNDL--GSLSALTNLTLSRNNFFS-- 700 (987)
Q Consensus 628 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~---~lp~~l--~~l~~L~~L~L~~n~l~~-- 700 (987)
..... ....+..+..+++|+.|+|++|.+... .++..+ +.+++|+.|+|++|.++.
T Consensus 228 l~~~g-----------------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 228 FTHLG-----------------SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp CHHHH-----------------HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred CCcHH-----------------HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 32100 011223456677888888888877531 134555 448899999999999886
Q ss_pred ---cchhh-hccCCCcEEecCCCcc
Q 001979 701 ---LPASI-NQLSRLETLNIDYCNR 721 (987)
Q Consensus 701 ---lp~~i-~~l~~L~~L~L~~c~~ 721 (987)
+|..+ .++++|+.|++++|+.
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHHHhcCCCceEEEccCCcC
Confidence 88877 6689999999998763
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=3.4e-16 Score=174.44 Aligned_cols=172 Identities=12% Similarity=0.080 Sum_probs=103.2
Q ss_pred eEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCccccC-ccccCCCCcEEeCcCC
Q 001979 423 FKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHP-SIGLLKRLKVLNMKEC 500 (987)
Q Consensus 423 ~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~-~i~~l~~L~~L~L~~c 500 (987)
++++.+++.++++|.++ .++++.|+|++|++....+. |.++++|++|+|++|...+.++. .+..+++|+.+...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45666777788887765 35778888887776655543 67777777777777766665554 3556666555443333
Q ss_pred CCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCC
Q 001979 501 IRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCS 580 (987)
Q Consensus 501 ~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~ 580 (987)
..+..+|. ..+..+++|++|++++|......+..+....++..|++.++.
T Consensus 90 N~l~~l~~------------------------------~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~ 139 (350)
T 4ay9_X 90 NNLLYINP------------------------------EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139 (350)
T ss_dssp TTCCEECT------------------------------TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT
T ss_pred CcccccCc------------------------------hhhhhccccccccccccccccCCchhhcccchhhhhhhcccc
Confidence 34444432 234555555555555554433333334455566677776666
Q ss_pred CCCcccc-cccCC-CCCcEeeCCCCCCCCCCccccCCCCCcEEEccCC
Q 001979 581 KLEEVPE-NLGHI-ASLENLDLGGTAIRRPPSTIVLLENLKELSFHGC 626 (987)
Q Consensus 581 ~l~~lp~-~l~~l-~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~ 626 (987)
.+..+|. .+..+ ..++.|++++|.+++++..+....+|+.|++.++
T Consensus 140 ~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC
T ss_pred ccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC
Confidence 6665553 33444 3577788888888777666555556666666543
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=9.5e-17 Score=175.82 Aligned_cols=201 Identities=18% Similarity=0.140 Sum_probs=138.4
Q ss_pred CCCceEEEcCCCCccc-ccccc--CCCCCCCEEecCCCCCCCCCCC-----CCCCCcccEEeccCCcCCccccCccccCC
Q 001979 419 PERLFKLNICYSLVEQ-LWQGV--QNMRHLKFIKLSHSVHLTKTPD-----FTGVPKLERLVLDGCTNLSFVHPSIGLLK 490 (987)
Q Consensus 419 ~~~L~~L~l~~~~i~~-l~~~~--~~l~~L~~L~Ls~~~~~~~~~~-----~~~l~~L~~L~L~~~~~l~~~~~~i~~l~ 490 (987)
..+|++|++++|.+.. .|..+ ..+++|++|+|++|.+....+. +..+++|++|+|++|......+..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3446666676666653 34444 6677777777777776655442 34577777777777766555556677777
Q ss_pred CCcEEeCcCCCCCcc--CCchhhhhhHHHhhhccccceeecCCcCCcccCcc----ccCCCCCCEEeccCCCCCcccCcc
Q 001979 491 RLKVLNMKECIRIKS--FPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPS----IKFLSRLTVLTLRDCKKLVSLPSS 564 (987)
Q Consensus 491 ~L~~L~L~~c~~l~~--lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~L~~~~~l~~lp~~ 564 (987)
+|++|+|++|...+. ++... .+..+++|++|++++|.++.++.. +..+++|++|++++|...+..|..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~------~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAAL------CPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTS------CTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred CCCEEECCCCCCccchhhhHHH------hhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 777777777754321 11110 124667788888888877765542 467788888888888777766766
Q ss_pred CCCC---CCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCC
Q 001979 565 ISDL---RSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQ 629 (987)
Q Consensus 565 l~~l---~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~ 629 (987)
+..+ ++|++|++++|... .+|..+. ++|+.|++++|.++++|. +..+++|+.|++++|...
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 6665 68888888887654 6777664 788999999998888765 677888999999888643
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=174.26 Aligned_cols=201 Identities=20% Similarity=0.219 Sum_probs=121.9
Q ss_pred CCCcEEeCcCCCCCccCCchhhhhhHHHh-hhccccceeecCCcCCccc-C----ccccCCCCCCEEeccCCCCCcccCc
Q 001979 490 KRLKVLNMKECIRIKSFPAEIEWASLEIV-QNAKRLLQLHLDQTSIEEI-P----PSIKFLSRLTVLTLRDCKKLVSLPS 563 (987)
Q Consensus 490 ~~L~~L~L~~c~~l~~lp~~i~~~~l~~~-~~l~~L~~L~L~~~~i~~l-p----~~i~~l~~L~~L~L~~~~~l~~lp~ 563 (987)
++|++|++++|...+..|..+ + ..+++|++|++++|.+... + ..+..+++|++|++++|......|.
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~-------~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 163 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLP-------LEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE 163 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCS-------SSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhh-------hhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH
Confidence 446666666654444444322 1 3455666666666665532 1 1234566777777777666555556
Q ss_pred cCCCCCCCCEEEecCCCCCCc--c--cccccCCCCCcEeeCCCCCCCCCCcc----ccCCCCCcEEEccCCCCCCCCccc
Q 001979 564 SISDLRSLKVLNLNGCSKLEE--V--PENLGHIASLENLDLGGTAIRRPPST----IVLLENLKELSFHGCKGQRKSWSS 635 (987)
Q Consensus 564 ~l~~l~~L~~L~l~~c~~l~~--l--p~~l~~l~~L~~L~L~~~~i~~~p~~----i~~l~~L~~L~L~~~~~~~~~~~~ 635 (987)
.+..+++|++|++++|..... + +..++.+++|++|++++|.++.++.. +..+++|++|++++|......+..
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 666777777777777654432 2 12235667777777777777655432 356677777777776643210000
Q ss_pred ccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccchhhhccCCCcEEe
Q 001979 636 LIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLN 715 (987)
Q Consensus 636 ~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~ 715 (987)
...+..+++|+.|+|++|.+. .+|..+. ++|+.|+|++|+++.+|. +..+++|+.|+
T Consensus 244 ------------------~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~ 300 (310)
T 4glp_A 244 ------------------APRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLT 300 (310)
T ss_dssp ------------------CSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEE
T ss_pred ------------------HHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEE
Confidence 011222367888888888886 3676654 788888888888887764 67788888888
Q ss_pred cCCCc
Q 001979 716 IDYCN 720 (987)
Q Consensus 716 L~~c~ 720 (987)
|++|+
T Consensus 301 L~~N~ 305 (310)
T 4glp_A 301 LDGNP 305 (310)
T ss_dssp CSSTT
T ss_pred CcCCC
Confidence 88865
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=8.2e-19 Score=211.14 Aligned_cols=385 Identities=15% Similarity=0.083 Sum_probs=214.4
Q ss_pred hhhcCCCCCcEEEecCcccCCCCCc------------------CCcccceEEecCCCCCCC-CCCC--CCCCceEEEcCC
Q 001979 371 ESFSRMKNLRLLKIRDVCLRHGIEY------------------LPDELRLLKWHGYPLRSL-PSNF--QPERLFKLNICY 429 (987)
Q Consensus 371 ~~f~~~~~Lr~L~l~~~~l~~~~~~------------------l~~~Lr~L~~~~~~l~~l-p~~~--~~~~L~~L~l~~ 429 (987)
..+.++++|+.|+++++.....+.. -.+.|+.|++.++.+... +..+ .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 4577889999999988653221111 124789999998875532 1122 467999999988
Q ss_pred C-Cccc--cccccCCCCCCCEEecCCCCCCCCCC----C-CCCCCcccEEeccCCc-CCc--cccCccccCCCCcEEeCc
Q 001979 430 S-LVEQ--LWQGVQNMRHLKFIKLSHSVHLTKTP----D-FTGVPKLERLVLDGCT-NLS--FVHPSIGLLKRLKVLNMK 498 (987)
Q Consensus 430 ~-~i~~--l~~~~~~l~~L~~L~Ls~~~~~~~~~----~-~~~l~~L~~L~L~~~~-~l~--~~~~~i~~l~~L~~L~L~ 498 (987)
+ .+.. ++....++++|++|+|++|.+....+ . ...+++|++|++++|. .+. .+...+..+++|++|+++
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 7 5554 45555678999999999987544322 2 3367899999999886 111 122223457899999999
Q ss_pred CCCCCccCCchhhhhhHHHhhhccccceeecCCcC-------CcccCccccCCCCCCEE-eccCCCCCcccCccCCCCCC
Q 001979 499 ECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTS-------IEEIPPSIKFLSRLTVL-TLRDCKKLVSLPSSISDLRS 570 (987)
Q Consensus 499 ~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~-------i~~lp~~i~~l~~L~~L-~L~~~~~l~~lp~~l~~l~~ 570 (987)
+|..++.+|.. +..+++|+.|++..+. +..++..+.++++|+.| .+.+. ....+|..+..+++
T Consensus 220 ~~~~~~~l~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~ 290 (594)
T 2p1m_B 220 RAVPLEKLATL--------LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSR 290 (594)
T ss_dssp TTSCHHHHHHH--------HHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTT
T ss_pred CCCcHHHHHHH--------HhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCC
Confidence 98665554443 3677777777754432 23444445555555555 22221 11223333334556
Q ss_pred CCEEEecCCCCCCc-ccccccCCCCCcEeeCCCCCCC--CCCccccCCCCCcEEEccCC--------CCCCCC-cc----
Q 001979 571 LKVLNLNGCSKLEE-VPENLGHIASLENLDLGGTAIR--RPPSTIVLLENLKELSFHGC--------KGQRKS-WS---- 634 (987)
Q Consensus 571 L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~L~~~~i~--~~p~~i~~l~~L~~L~L~~~--------~~~~~~-~~---- 634 (987)
|+.|++++|..... ++..+..+++|+.|++++| +. .++.....+++|+.|++.+| ...... ..
T Consensus 291 L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~ 369 (594)
T 2p1m_B 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369 (594)
T ss_dssp CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence 66666666552211 2223445566666666555 22 11222223556666666332 111100 00
Q ss_pred cccccCCCCCCCCCCCccccCCC-CCCCcccEEecC--C----CCCCC----CCCccccCCCCCCCEEeCCCCCCc-ccc
Q 001979 635 SLIWLPFYPRANRDSLGFFIPSL-SGLHCLSRLDLG--D----CNLQE----GAIPNDLGSLSALTNLTLSRNNFF-SLP 702 (987)
Q Consensus 635 ~~~~~~~l~~~~~~~~~~~~~~l-~~l~~L~~L~Ls--~----~~l~~----~~lp~~l~~l~~L~~L~L~~n~l~-~lp 702 (987)
....+..+....+...+..+..+ ..+++|+.|+++ + +.+++ ..++..+..+++|+.|+|++ .++ ..+
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 01111111111111111112222 257899999999 3 34442 12223366789999999988 555 333
Q ss_pred hhhhc-cCCCcEEecCCCccccc-CC---CCcccccccccccccccccccCCCccc-CCCCceEEeccccc
Q 001979 703 ASINQ-LSRLETLNIDYCNRLKA-LP---ELPASIDGLFAHNCTSLIKLCSPSNIT-RLTPRMFYLSNCFK 767 (987)
Q Consensus 703 ~~i~~-l~~L~~L~L~~c~~L~~-lp---~lp~sL~~L~~~~C~~L~~l~~~~~l~-~~~~~~l~~~~C~~ 767 (987)
..+.. +++|+.|+|++|..-.. ++ .-.++|+.|++.+|+- .......... ......+++++|+.
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 44544 89999999999873111 11 1246789999999874 2211110111 11346889999975
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=1.7e-18 Score=196.17 Aligned_cols=250 Identities=14% Similarity=0.119 Sum_probs=149.3
Q ss_pred CCCCCCCCC-CCCCceEEEcCCCCccc-----cccccCCCCCCCEEecCCCCCCC---CCCC--------CCCCCcccEE
Q 001979 409 PLRSLPSNF-QPERLFKLNICYSLVEQ-----LWQGVQNMRHLKFIKLSHSVHLT---KTPD--------FTGVPKLERL 471 (987)
Q Consensus 409 ~l~~lp~~~-~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~Ls~~~~~~---~~~~--------~~~l~~L~~L 471 (987)
.+..++..+ .+++|++|++++|.+.. ++..+..+++|++|+|++|.+.. .+|. +..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 344555444 57789999999999885 45568899999999999975432 2332 3678888888
Q ss_pred eccCCcCCc----cccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhc---------cccceeecCCcCCc--c
Q 001979 472 VLDGCTNLS----FVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNA---------KRLLQLHLDQTSIE--E 536 (987)
Q Consensus 472 ~L~~~~~l~----~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l---------~~L~~L~L~~~~i~--~ 536 (987)
+|++|.... .++..+..+++|++|+|++|......+..+. ..+..+ ++|++|++++|.+. .
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~----~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA----RALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH----HHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH----HHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 888877655 3666778888888888888743221111110 112223 67777777777664 3
Q ss_pred cC---ccccCCCCCCEEeccCCCCCc-----ccCccCCCCCCCCEEEecCCCCC----CcccccccCCCCCcEeeCCCCC
Q 001979 537 IP---PSIKFLSRLTVLTLRDCKKLV-----SLPSSISDLRSLKVLNLNGCSKL----EEVPENLGHIASLENLDLGGTA 604 (987)
Q Consensus 537 lp---~~i~~l~~L~~L~L~~~~~l~-----~lp~~l~~l~~L~~L~l~~c~~l----~~lp~~l~~l~~L~~L~L~~~~ 604 (987)
+| ..+..+++|++|++++|.... ..|..+..+++|+.|++++|... ..+|..+..+++|+.|+|++|.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 33 345556666666666654431 12224445555555555555432 3344444445555555555544
Q ss_pred CCCCCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCC--CCCCcccEEecCCCCCCCC---CCc
Q 001979 605 IRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSL--SGLHCLSRLDLGDCNLQEG---AIP 679 (987)
Q Consensus 605 i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~l~~L~~L~Ls~~~l~~~---~lp 679 (987)
++... .. ..+..+ ..+++|+.|+|++|.+... .+|
T Consensus 256 i~~~~-----------------------~~-----------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 256 LSARG-----------------------AA-----------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp CCHHH-----------------------HH-----------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred Cchhh-----------------------HH-----------------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 43210 00 001112 3356777777777776421 255
Q ss_pred ccc-CCCCCCCEEeCCCCCCcccc
Q 001979 680 NDL-GSLSALTNLTLSRNNFFSLP 702 (987)
Q Consensus 680 ~~l-~~l~~L~~L~L~~n~l~~lp 702 (987)
..+ .++++|+.|+|++|.++...
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHhcCCCceEEEccCCcCCcch
Confidence 555 56788999999999887544
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=2.5e-15 Score=159.00 Aligned_cols=175 Identities=18% Similarity=0.230 Sum_probs=82.6
Q ss_pred ccceEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccc-ccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCC
Q 001979 399 ELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQ-GVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGC 476 (987)
Q Consensus 399 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~ 476 (987)
..+.+++.++.+..+|..+. ..++.|++++|.+..++. .+..+++|++|+|++|.+....+. |.++++|++|+|++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 34556666666666665443 455555555555555432 344555555555555544443333 444444444444444
Q ss_pred cCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCcc-ccCCCCCCEEeccCC
Q 001979 477 TNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPS-IKFLSRLTVLTLRDC 555 (987)
Q Consensus 477 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~ 555 (987)
......+..++.+ ++|++|++++|.++.+|.. +..+++|++|+|++|
T Consensus 94 ~l~~~~~~~~~~l--------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 94 QLASLPLGVFDHL--------------------------------TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp CCCCCCTTTTTTC--------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccccChhHhccc--------------------------------CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 3322222233334 4444444444444444332 344555555555554
Q ss_pred CCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCC
Q 001979 556 KKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIR 606 (987)
Q Consensus 556 ~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 606 (987)
......+..+..+++|+.|++++|......+..+..+++|+.|++++|.+.
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 333222223445555555555554433333334445555555555555544
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=1.3e-15 Score=170.62 Aligned_cols=294 Identities=14% Similarity=0.111 Sum_probs=172.5
Q ss_pred CCCCCCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhh-hhccCH
Q 001979 2 SHTLLSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREV-SQTRGL 80 (987)
Q Consensus 2 ~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~-~~~~~~ 80 (987)
.|.++..++.||||++++++|.+ +.. +++.|+|++|+|||||++.++++... ..+|++..... ......
T Consensus 5 ~~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 5 DTSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNL----PYIYLDLRKFEERNYISY 74 (357)
T ss_dssp CSSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTC----CEEEEEGGGGTTCSCCCH
T ss_pred CCCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCC----CEEEEEchhhccccCCCH
Confidence 46677778899999999999999 753 58999999999999999999987642 35676532110 000122
Q ss_pred HHHHHHHHHHH-------------hcCC-C-------ccccc---chhhHHHHHHHhcC---CceEEEEeCCCChH----
Q 001979 81 VALQEQLVSEI-------------LLDK-N-------VKIWD---VHKGCHMIRIKLRH---KRVLLVIDDVDEFD---- 129 (987)
Q Consensus 81 ~~l~~~ll~~l-------------~~~~-~-------~~~~~---~~~~~~~l~~~L~~---k~~LlVlDdv~~~~---- 129 (987)
......+...+ +... . ..... .......+.+.+.. ++++|||||++...
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCc
Confidence 22222222221 1100 0 00000 01122233333321 48999999996632
Q ss_pred -H-HHHHhcCCCCCCCCcEEEEEeCCcccccc----------c-Cc-CceEEcCCCCHHHHHHHHHHhhccCCCCCChHH
Q 001979 130 -Q-LQALAGQRDWFGLGSRIIITTRDRHLLVR----------C-DV-EDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYF 195 (987)
Q Consensus 130 -~-~~~l~~~~~~~~~gs~IiiTtR~~~v~~~----------~-~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 195 (987)
+ +..+..... ..++.++|+|+|....... . +. ...+++.+|+.+|+.+++...+.......+.
T Consensus 155 ~~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-- 231 (357)
T 2fna_A 155 VNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-- 231 (357)
T ss_dssp CCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC--
T ss_pred hhHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc--
Confidence 1 222211111 1247899999997643111 1 11 3579999999999999998754211222222
Q ss_pred HHHHHHHHHhCCCchhHHHHhhhhcC-CCHHHHHHHHHhhhcCCCchHHHHHH-HhHh--CccHHHHHHHhheeeccCCC
Q 001979 196 ELSHSMVNYADGLPLALEILGSFLFA-RSKAEWKDALDRLKYVPDQKIFEILK-ISYD--GLQETEKKIFLDIACFFKGK 271 (987)
Q Consensus 196 ~~~~~i~~~~~G~PLal~~l~~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~-~sy~--~L~~~~k~~fl~la~f~~~~ 271 (987)
...|++.++|+|+++..++..+.. .+...|... +.......+...+. ..++ .|++..+.++..+|+ ..
T Consensus 232 --~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~--g~- 303 (357)
T 2fna_A 232 --YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQ---TLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK--CG- 303 (357)
T ss_dssp --HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--CB-
T ss_pred --HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHH---HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc--CC-
Confidence 178999999999999999877542 233333221 11000011111122 1111 688999999999998 23
Q ss_pred CHHHHHHHHH-hCC--CC---ccccchhhhcccceEEeCCeEE-ecHHHHHH
Q 001979 272 DKDQVRELLD-SCD--FY---PEIGISVLIDKCIITLSNNILC-MHDLIQDM 316 (987)
Q Consensus 272 ~~~~l~~~~~-~~~--~~---~~~~~~~L~~~~Li~~~~~~~~-mHdll~~~ 316 (987)
+...+...+. ..| .. ....++.|.+.++|...++.|+ -|++++++
T Consensus 304 ~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 304 KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 5566654432 123 21 2456899999999998766776 47888775
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=4.9e-15 Score=156.73 Aligned_cols=171 Identities=20% Similarity=0.283 Sum_probs=125.6
Q ss_pred CCCcEEEecCcccCCCCCcCCcccceEEecCCCCCCCCCC-C-CCCCceEEEcCCCCcccccc-ccCCCCCCCEEecCCC
Q 001979 377 KNLRLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPSN-F-QPERLFKLNICYSLVEQLWQ-GVQNMRHLKFIKLSHS 453 (987)
Q Consensus 377 ~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~Ls~~ 453 (987)
.+.+.++++++.+..-+..+|..++.|++.++.+..++.. | .+.+|++|++++|.++.++. .+..+++|++|+|++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3567889998888877777889999999999999999764 4 78999999999999998865 5789999999999999
Q ss_pred CCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCc
Q 001979 454 VHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQT 532 (987)
Q Consensus 454 ~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~ 532 (987)
.+....+. |..+++|++|+|++|......+..++.+++|++|+|++| .++.+|... +..+++|+.|++++|
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-------~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGA-------FDKLTNLQTLSLSTN 165 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT-------TTTCTTCCEEECCSS
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHH-------cCcCcCCCEEECCCC
Confidence 98877765 789999999999998655433344677888888888876 444444421 144555555555555
Q ss_pred CCcccCc-cccCCCCCCEEeccCC
Q 001979 533 SIEEIPP-SIKFLSRLTVLTLRDC 555 (987)
Q Consensus 533 ~i~~lp~-~i~~l~~L~~L~L~~~ 555 (987)
.++.+|. .+..+++|++|++++|
T Consensus 166 ~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 166 QLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCccCHHHHhCCCCCCEEEeeCC
Confidence 5554443 2344444444444444
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=7.5e-17 Score=180.76 Aligned_cols=256 Identities=14% Similarity=0.103 Sum_probs=127.2
Q ss_pred EEEcCCCCcccc-ccccCCCCCCCEEecCCCCCCCCCC-----CCCCCC-cccEEeccCCcCCccccCccccC-----CC
Q 001979 424 KLNICYSLVEQL-WQGVQNMRHLKFIKLSHSVHLTKTP-----DFTGVP-KLERLVLDGCTNLSFVHPSIGLL-----KR 491 (987)
Q Consensus 424 ~L~l~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~-----~~~~l~-~L~~L~L~~~~~l~~~~~~i~~l-----~~ 491 (987)
+++++++.+... |..+...++|++|+|++|.+....+ .+..++ +|++|+|++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 456677777754 3444445557777777777655443 255566 67777777765544444444443 66
Q ss_pred CcEEeCcCCCCCccCCchhhhhhHHHhhhc-cccceeecCCcCCcccCcc-----ccC-CCCCCEEeccCCCCCcccCcc
Q 001979 492 LKVLNMKECIRIKSFPAEIEWASLEIVQNA-KRLLQLHLDQTSIEEIPPS-----IKF-LSRLTVLTLRDCKKLVSLPSS 564 (987)
Q Consensus 492 L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l-~~L~~L~L~~~~i~~lp~~-----i~~-l~~L~~L~L~~~~~l~~lp~~ 564 (987)
|++|+|++|......+..+. ..+..+ ++|++|++++|.++..+.. +.. .++|++|++++|......+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~----~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-- 155 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELV----KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS-- 155 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHH----HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH--
T ss_pred ccEEECcCCcCChHHHHHHH----HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH--
Confidence 66666666642222222110 111222 5566666666655543321 222 1345555555443332111
Q ss_pred CCCCCCCCEEEecCCCCCCcccccccCCC-CCcEeeCCCCCCCCCCc-----cccCC-CCCcEEEccCCCCCCCCccccc
Q 001979 565 ISDLRSLKVLNLNGCSKLEEVPENLGHIA-SLENLDLGGTAIRRPPS-----TIVLL-ENLKELSFHGCKGQRKSWSSLI 637 (987)
Q Consensus 565 l~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~L~~~~i~~~p~-----~i~~l-~~L~~L~L~~~~~~~~~~~~~~ 637 (987)
..++..+..++ +|++|++++|.++.... .+..+ ++|+.|++++|.......
T Consensus 156 ------------------~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~---- 213 (362)
T 3goz_A 156 ------------------DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY---- 213 (362)
T ss_dssp ------------------HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH----
T ss_pred ------------------HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH----
Confidence 12223333333 55555555555543321 22233 355555555554221100
Q ss_pred ccCCCCCCCCCCCccccCCCCC-CCcccEEecCCCCCCCCCC---ccccCCCCCCCEEeCCCCCCc--------ccchhh
Q 001979 638 WLPFYPRANRDSLGFFIPSLSG-LHCLSRLDLGDCNLQEGAI---PNDLGSLSALTNLTLSRNNFF--------SLPASI 705 (987)
Q Consensus 638 ~~~~l~~~~~~~~~~~~~~l~~-l~~L~~L~Ls~~~l~~~~l---p~~l~~l~~L~~L~L~~n~l~--------~lp~~i 705 (987)
...+..+.. .++|+.|+|++|.+.+... ...+..+++|+.|+|++|.+. .++..+
T Consensus 214 -------------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~ 280 (362)
T 3goz_A 214 -------------AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF 280 (362)
T ss_dssp -------------HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS
T ss_pred -------------HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh
Confidence 001111222 2467777777776654221 233566677777777777633 334455
Q ss_pred hccCCCcEEecCCCc
Q 001979 706 NQLSRLETLNIDYCN 720 (987)
Q Consensus 706 ~~l~~L~~L~L~~c~ 720 (987)
..+++|+.|++++|+
T Consensus 281 ~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 281 PNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEEEECTTSCB
T ss_pred ccCCceEEEecCCCc
Confidence 667778888887765
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=3.1e-17 Score=183.92 Aligned_cols=203 Identities=15% Similarity=0.124 Sum_probs=134.7
Q ss_pred eEEecCCCCCCCCCCC--CCCCceEEEcCCCCccccc-----cccCCCC-CCCEEecCCCCCCCCCCC-CCCC-----Cc
Q 001979 402 LLKWHGYPLRSLPSNF--QPERLFKLNICYSLVEQLW-----QGVQNMR-HLKFIKLSHSVHLTKTPD-FTGV-----PK 467 (987)
Q Consensus 402 ~L~~~~~~l~~lp~~~--~~~~L~~L~l~~~~i~~l~-----~~~~~l~-~L~~L~Ls~~~~~~~~~~-~~~l-----~~ 467 (987)
++++..+.+......+ .+.+|++|++++|.+...+ ..+..++ +|++|+|++|.+....+. +..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3456666666544333 4556999999999999875 6778888 999999999987766553 4443 99
Q ss_pred ccEEeccCCcCCccccCcc----ccC-CCCcEEeCcCCCCCccCCchhhhhhHHHhhh-ccccceeecCCcCCc-----c
Q 001979 468 LERLVLDGCTNLSFVHPSI----GLL-KRLKVLNMKECIRIKSFPAEIEWASLEIVQN-AKRLLQLHLDQTSIE-----E 536 (987)
Q Consensus 468 L~~L~L~~~~~l~~~~~~i----~~l-~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~-l~~L~~L~L~~~~i~-----~ 536 (987)
|++|+|++|......+..+ ..+ ++|++|++++|. ++..+...- ...+.. .++|++|++++|.++ .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l---~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEF---KQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHH---HHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHH---HHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 9999999998665555443 344 899999999985 444332110 011233 369999999999998 4
Q ss_pred cCccccCCC-CCCEEeccCCCCCcccCcc----CCCC-CCCCEEEecCCCCCCc----ccccccC-CCCCcEeeCCCCCC
Q 001979 537 IPPSIKFLS-RLTVLTLRDCKKLVSLPSS----ISDL-RSLKVLNLNGCSKLEE----VPENLGH-IASLENLDLGGTAI 605 (987)
Q Consensus 537 lp~~i~~l~-~L~~L~L~~~~~l~~lp~~----l~~l-~~L~~L~l~~c~~l~~----lp~~l~~-l~~L~~L~L~~~~i 605 (987)
++..+..++ +|++|++++|......+.. +..+ ++|+.|++++|..... ++..+.. .++|+.|++++|.+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 555566665 8888888887655444332 2333 4677777777654331 3344433 23566666666655
Q ss_pred CCC
Q 001979 606 RRP 608 (987)
Q Consensus 606 ~~~ 608 (987)
...
T Consensus 238 ~~~ 240 (362)
T 3goz_A 238 HGP 240 (362)
T ss_dssp CCC
T ss_pred CcH
Confidence 543
No 103
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=4.1e-15 Score=170.02 Aligned_cols=287 Identities=13% Similarity=0.037 Sum_probs=171.9
Q ss_pred CCCCCccccchhHHHHHHHh-cC--CC--CCeEEEEE--EcCCcchHHHHHHHHHHHhhcC-----CCcceEEEEehHhh
Q 001979 7 SASEKLVGMDYRLEQIYLML-GT--GL--DEARILGI--CGMGGIGKTTLARFVFDNISYQ-----FDDGSSFLANVREV 74 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~~v~I--~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~~ 74 (987)
..++.++||+.+++++.+++ .. .. ...+.+.| +|++|+||||||+.++++.... +...++|+. .
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~ 94 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----A 94 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----G
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----C
Confidence 34588999999999999988 42 11 23356667 9999999999999999987553 232456665 3
Q ss_pred hhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhc--CCceEEEEeCCCCh--------HHHHHHhcCCCCC---
Q 001979 75 SQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLR--HKRVLLVIDDVDEF--------DQLQALAGQRDWF--- 141 (987)
Q Consensus 75 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~--------~~~~~l~~~~~~~--- 141 (987)
........+..+++..+.........+..+....+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 3345666777788777533211111223344555666654 67999999999763 3344333322111
Q ss_pred C--CCcEEEEEeCCccccccc---------CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhC----
Q 001979 142 G--LGSRIIITTRDRHLLVRC---------DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYAD---- 206 (987)
Q Consensus 142 ~--~gs~IiiTtR~~~v~~~~---------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---- 206 (987)
+ ....+|+||++..+.... .....+++++++.+++.++|...+.....+..-..+....+++.++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGT
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhcc
Confidence 2 345588888765432111 1123399999999999999976642111111112367888999999
Q ss_pred --CCchhHHHHhhhhc------C---CCHHHHHHHHHhhhcCCCchHHHHHHHhHhCccHHHHHHHhheeeccC----CC
Q 001979 207 --GLPLALEILGSFLF------A---RSKAEWKDALDRLKYVPDQKIFEILKISYDGLQETEKKIFLDIACFFK----GK 271 (987)
Q Consensus 207 --G~PLal~~l~~~L~------~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~----~~ 271 (987)
|+|..+..++.... + -+.+.+..++..... ...+.-+++.||+.++.++..+|.+.. .+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 99976655543221 1 133444444433210 223444678899999999999997642 22
Q ss_pred CHHHHHH----HH-HhCCCC------ccccchhhhcccceEEe
Q 001979 272 DKDQVRE----LL-DSCDFY------PEIGISVLIDKCIITLS 303 (987)
Q Consensus 272 ~~~~l~~----~~-~~~~~~------~~~~~~~L~~~~Li~~~ 303 (987)
....+.. +. ...|.. ....++.|.+.++|...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 3333322 22 223322 13457889999999875
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=9.4e-15 Score=158.03 Aligned_cols=169 Identities=25% Similarity=0.325 Sum_probs=123.6
Q ss_pred hhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEe
Q 001979 519 QNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENL 598 (987)
Q Consensus 519 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 598 (987)
..+++|+.|++++|.+..++. +..+++|++|++++|...+. +. +..+++|+.|++++|.. ..+| .+..+++|+.|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcC-CCCh-hhccCCCCCEE
Confidence 455666666666666666653 66677777777777654443 33 66777777777777653 3344 37777888888
Q ss_pred eCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCC
Q 001979 599 DLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAI 678 (987)
Q Consensus 599 ~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~l 678 (987)
++++|.+..+ ..+..+++|+.|++++|..... +.+..+++|+.|++++|.+.. +
T Consensus 118 ~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-----------------------~~l~~l~~L~~L~L~~N~l~~--~ 171 (291)
T 1h6t_A 118 SLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-----------------------TVLSRLTKLDTLSLEDNQISD--I 171 (291)
T ss_dssp ECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-----------------------GGGGGCTTCSEEECCSSCCCC--C
T ss_pred ECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-----------------------hhhccCCCCCEEEccCCcccc--c
Confidence 8888887776 4577788888888888764321 346677889999999998864 4
Q ss_pred ccccCCCCCCCEEeCCCCCCcccchhhhccCCCcEEecCCCc
Q 001979 679 PNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCN 720 (987)
Q Consensus 679 p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 720 (987)
+. +..+++|+.|+|++|.++.+|. +..+++|+.|++++|+
T Consensus 172 ~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 172 VP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp GG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred hh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 44 8899999999999999999874 8899999999999865
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=1.2e-14 Score=170.56 Aligned_cols=193 Identities=19% Similarity=0.221 Sum_probs=109.0
Q ss_pred cccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCC
Q 001979 467 KLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSR 546 (987)
Q Consensus 467 ~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 546 (987)
+|++|+|++|. +..+|..+. ++|++|+|++| .++.+| . .+++|++|++++|.++.+|. +.. +
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l~--~~L~~L~Ls~N-~l~~ip-~----------~l~~L~~L~Ls~N~l~~ip~-l~~--~ 121 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNLP--PQITVLEITQN-ALISLP-E----------LPASLEYLDACDNRLSTLPE-LPA--S 121 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCCC--TTCSEEECCSS-CCSCCC-C----------CCTTCCEEECCSSCCSCCCC-CCT--T
T ss_pred CccEEEeCCCC-CCccCHhHc--CCCCEEECcCC-CCcccc-c----------ccCCCCEEEccCCCCCCcch-hhc--C
Confidence 67777777764 344666553 66777777776 344555 1 24667777777777777666 444 6
Q ss_pred CCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCC
Q 001979 547 LTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGC 626 (987)
Q Consensus 547 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~ 626 (987)
|++|++++|...+ +|. .+++|+.|++++|... .+|. .+++|+.|++++|.++.+|. +. ++|+.|+|++|
T Consensus 122 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 122 LKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS
T ss_pred CCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC
Confidence 7777777665444 555 4666777777666533 3554 45666677777776666666 43 66666666666
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCc-ccchhh
Q 001979 627 KGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFF-SLPASI 705 (987)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i 705 (987)
..... +. +. . .-....+.|+.|+|++|.+.. +|..+..+++|+.|+|++|.++ .+|..+
T Consensus 191 ~L~~l-p~-~~--------------~--~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 191 LLESL-PA-VP--------------V--RNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CCSSC-CC-CC------------------------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred CCCch-hh-HH--------------H--hhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 53311 00 00 0 000111223666666666643 5655555666666666666665 345444
Q ss_pred hcc
Q 001979 706 NQL 708 (987)
Q Consensus 706 ~~l 708 (987)
..+
T Consensus 251 ~~l 253 (571)
T 3cvr_A 251 SQQ 253 (571)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=4.2e-15 Score=174.30 Aligned_cols=177 Identities=19% Similarity=0.261 Sum_probs=87.2
Q ss_pred CCcEEEecCcccCCCCCcCCcccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCC
Q 001979 378 NLRLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLT 457 (987)
Q Consensus 378 ~Lr~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~ 457 (987)
+|+.|+++++.+.+-...+++.|++|++++|.+..+| -.+.+|++|++++|.++.+|. +.. +|++|+|++|.+..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC
Confidence 5666766666555432334445555555555555555 224455555555555555544 332 55555555554443
Q ss_pred CCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCccc
Q 001979 458 KTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEI 537 (987)
Q Consensus 458 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~l 537 (987)
+|. .+++|++|+|++|... .+|. .+++|++|+|+ +|.++.+
T Consensus 135 -lp~--~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls--------------------------------~N~L~~l 175 (571)
T 3cvr_A 135 -LPE--LPALLEYINADNNQLT-MLPE---LPTSLEVLSVR--------------------------------NNQLTFL 175 (571)
T ss_dssp -CCC--CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC--------------------------------SSCCSCC
T ss_pred -CCC--cCccccEEeCCCCccC-cCCC---cCCCcCEEECC--------------------------------CCCCCCc
Confidence 333 3455555555554322 2333 33444455554 4444444
Q ss_pred CccccCCCCCCEEeccCCCCCcccCccCCCCCCC-------CEEEecCCCCCCcccccccCCCCCcEeeCCCCCCC
Q 001979 538 PPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSL-------KVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIR 606 (987)
Q Consensus 538 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L-------~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 606 (987)
|. +. ++|++|+|++|... .+|. +.. +| +.|++++|. +..+|..+..+++|+.|++++|.++
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred ch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCC
Confidence 44 33 45555555544322 4443 322 34 666666553 3345555555666666666666655
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=1.1e-14 Score=157.52 Aligned_cols=169 Identities=21% Similarity=0.258 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCc
Q 001979 419 PERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMK 498 (987)
Q Consensus 419 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~ 498 (987)
+.+|++|+++++.++.++ ++..+++|++|+|++|.+....+ +..+++|++|++++|.. ..++ .++.+++|++|+++
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEECT
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC-CCCh-hhccCCCCCEEECC
Confidence 344455555555554442 24455555555555555443333 55555555555555432 2222 24455555555555
Q ss_pred CCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecC
Q 001979 499 ECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNG 578 (987)
Q Consensus 499 ~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~ 578 (987)
+| .++.++. +..+++|+.|++++|.++.+ ..+..+++|++|++++|...+..| +..+++|+.|++++
T Consensus 121 ~n-~i~~~~~---------l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 121 HN-GISDING---------LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187 (291)
T ss_dssp TS-CCCCCGG---------GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CC-cCCCChh---------hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCC
Confidence 54 2222221 13444455555555544444 234444444444444443322211 33444444444444
Q ss_pred CCCCCcccccccCCCCCcEeeCCCCCCC
Q 001979 579 CSKLEEVPENLGHIASLENLDLGGTAIR 606 (987)
Q Consensus 579 c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 606 (987)
|.. ..++. +..+++|+.|++++|.+.
T Consensus 188 N~i-~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 188 NHI-SDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp SCC-CBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred CcC-CCChh-hccCCCCCEEECcCCccc
Confidence 322 22221 334444444444444333
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=4.5e-14 Score=167.51 Aligned_cols=124 Identities=28% Similarity=0.376 Sum_probs=58.1
Q ss_pred ccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCC
Q 001979 487 GLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSIS 566 (987)
Q Consensus 487 ~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~ 566 (987)
..+++|+.|++++| .+..+|. + ..+++|+.|+|++|.+..+|. +..+++|+.|+|++|.... +| .+.
T Consensus 40 ~~L~~L~~L~l~~n-~i~~l~~-l--------~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~ 106 (605)
T 1m9s_A 40 NELNSIDQIIANNS-DIKSVQG-I--------QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLK 106 (605)
T ss_dssp HHHTTCCCCBCTTC-CCCCCTT-G--------GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TST
T ss_pred hcCCCCCEEECcCC-CCCCChH-H--------ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhc
Confidence 44555555555554 2333332 2 455555555555555555544 5555555555555543322 22 344
Q ss_pred CCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCC
Q 001979 567 DLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGC 626 (987)
Q Consensus 567 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~ 626 (987)
.+++|+.|+|++|.... + ..+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|
T Consensus 107 ~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS
T ss_pred cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC
Confidence 45555555555543222 2 2344444455555544444443 33444444444444443
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=9.7e-15 Score=173.26 Aligned_cols=172 Identities=21% Similarity=0.251 Sum_probs=86.3
Q ss_pred CCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeC
Q 001979 418 QPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNM 497 (987)
Q Consensus 418 ~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 497 (987)
.+.+|+.|+++++.+..++ ++..+++|+.|+|++|.+....+ +..+++|++|+|++|.. ..++ .++.+++|++|+|
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCCEEEe
Confidence 3445555555555555543 34555555555555555443333 55555555555555432 2222 4555555555555
Q ss_pred cCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEec
Q 001979 498 KECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLN 577 (987)
Q Consensus 498 ~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~ 577 (987)
++|. +..++. +..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|...+..| +..+++|+.|+|+
T Consensus 117 s~N~-l~~l~~---------l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 117 EHNG-ISDING---------LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 183 (605)
T ss_dssp TTSC-CCCCGG---------GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred cCCC-CCCCcc---------ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence 5552 222221 24555555555555555554 345555555555555554433333 4555555555555
Q ss_pred CCCCCCcccccccCCCCCcEeeCCCCCCCCC
Q 001979 578 GCSKLEEVPENLGHIASLENLDLGGTAIRRP 608 (987)
Q Consensus 578 ~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~ 608 (987)
+|.. ..+| .+..+++|+.|+|++|.+...
T Consensus 184 ~N~i-~~l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 184 KNHI-SDLR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp SSCC-CBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred CCCC-CCCh-HHccCCCCCEEEccCCcCcCC
Confidence 5533 2232 345555555555555555443
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=4.3e-14 Score=144.80 Aligned_cols=145 Identities=19% Similarity=0.266 Sum_probs=75.5
Q ss_pred eEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccc-cCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCC
Q 001979 402 LLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQG-VQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNL 479 (987)
Q Consensus 402 ~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l 479 (987)
.++..++.+..+|..+ +.+|++|++++|.++.++.. +..+++|++|+|++|.+....+. |..+++|++|+|++|...
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 4455555566666544 34666666666666665443 45666666666666665544433 456666666666665433
Q ss_pred ccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCcc-ccCCCCCCEEeccCC
Q 001979 480 SFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPS-IKFLSRLTVLTLRDC 555 (987)
Q Consensus 480 ~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~ 555 (987)
...+..++.+++|++|++++| .++.+|... +..+++|+.|++++|.++.+|.. +..+++|++|++++|
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-------~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTN-QLQSLPDGV-------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-CCCCCCTTT-------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred ccCHhHhcCccCCCEEEcCCC-cCcccCHhH-------hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 322233455556666666555 233333321 13444555555555554444432 344444444444444
No 111
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=5.9e-13 Score=150.43 Aligned_cols=277 Identities=15% Similarity=0.098 Sum_probs=176.1
Q ss_pred CCCccccchhHHHHHHHhcC--CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC------C-CcceEEEEehHhhhhcc-
Q 001979 9 SEKLVGMDYRLEQIYLMLGT--GLDEARILGICGMGGIGKTTLARFVFDNISYQ------F-DDGSSFLANVREVSQTR- 78 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~------f-~~~~~~~~~~~~~~~~~- 78 (987)
++.++||+.+++++..++.. .....+.|.|+|++|+||||+|+++++.+... + ....+|++ .....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCC
Confidence 47899999999999987754 22345689999999999999999999976433 2 32456665 33334
Q ss_pred CHHHHHHHHHHHHhcCCCc-ccccchhhHHHHHHHhcCCceEEEEeCCCChHH-------HHHHhcCCCCCCCCcEEEEE
Q 001979 79 GLVALQEQLVSEILLDKNV-KIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFDQ-------LQALAGQRDWFGLGSRIIIT 150 (987)
Q Consensus 79 ~~~~l~~~ll~~l~~~~~~-~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~IiiT 150 (987)
....+..+++.++...... ...+.......+.+.+..++.+|||||++.... +..+.... .+.+||+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 5566777777775332211 112234456677777777666999999976432 33444332 68889999
Q ss_pred eCCccccccc------CcCceEEcCCCCHHHHHHHHHHhhc---cCCCCCChHHHHHHHHHHHhC---CCch-hHHHHhh
Q 001979 151 TRDRHLLVRC------DVEDTYMVEKLNYNEALHLFSWKAF---RKGHPTDGYFELSHSMVNYAD---GLPL-ALEILGS 217 (987)
Q Consensus 151 tR~~~v~~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---G~PL-al~~l~~ 217 (987)
|+........ .....+++++++.++..+++...+. ......+ +..+.++++++ |.|. |+..+-.
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFR 247 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9876321111 1124899999999999999998753 2222222 45677778887 9887 3333322
Q ss_pred hh--c----CCCHHHHHHHHHhhhcCCCchHHHHHHHhHhCccHHHHHHHhheeeccCCCCH-HHHHHHHHhCCCCc---
Q 001979 218 FL--F----ARSKAEWKDALDRLKYVPDQKIFEILKISYDGLQETEKKIFLDIACFFKGKDK-DQVRELLDSCDFYP--- 287 (987)
Q Consensus 218 ~L--~----~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~~-~~l~~~~~~~~~~~--- 287 (987)
.. . .-+.+.+..+++... ...+..++++|++++|..+..++....+.+. +....+....|..+
T Consensus 248 a~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~ 320 (384)
T 2qby_B 248 AAQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSY 320 (384)
T ss_dssp HHHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCH
T ss_pred HHHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCH
Confidence 21 1 236677777776553 2456677899999999888877761111111 23333333333221
Q ss_pred ---cccchhhhcccceEEe
Q 001979 288 ---EIGISVLIDKCIITLS 303 (987)
Q Consensus 288 ---~~~~~~L~~~~Li~~~ 303 (987)
...+..|.++++|...
T Consensus 321 ~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 321 RRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 2346788888998764
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=3.3e-14 Score=144.19 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=68.3
Q ss_pred CCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCc
Q 001979 419 PERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMK 498 (987)
Q Consensus 419 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~ 498 (987)
+.+|++|+++++.+..++ ++..+++|++|++++|. ...++.+..+++|++|++++|......+..++.+++|++|+++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 345566666666666555 56666667777776663 3334456666666666666665555455566666666666666
Q ss_pred CCCCCccCCchhhhhhHHHhhhccccceeecCCcC-CcccCccccCCCCCCEEeccCC
Q 001979 499 ECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTS-IEEIPPSIKFLSRLTVLTLRDC 555 (987)
Q Consensus 499 ~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~~ 555 (987)
+|......|..+ ..+++|++|++++|. ++.+| .+..+++|++|++++|
T Consensus 121 ~n~i~~~~~~~l--------~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 121 HSAHDDSILTKI--------NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp SSBCBGGGHHHH--------TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB
T ss_pred CCccCcHhHHHH--------hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC
Confidence 653333233222 344444444444444 44443 2444444444444443
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=3.2e-14 Score=151.30 Aligned_cols=168 Identities=20% Similarity=0.249 Sum_probs=132.9
Q ss_pred hhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEe
Q 001979 519 QNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENL 598 (987)
Q Consensus 519 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 598 (987)
..+.++..++++++.++.++ .+..+++|++|++++|. +..+| .+..+++|+.|++++|.. ..++. +..+++|+.|
T Consensus 16 ~~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 16 PGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEE
T ss_pred HHHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEE
Confidence 35667777888888888777 57788888888888875 34566 577888899999988754 44555 8888999999
Q ss_pred eCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCC
Q 001979 599 DLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAI 678 (987)
Q Consensus 599 ~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~l 678 (987)
++++|.++++|.... ++|+.|++++|.... .+.+..+++|+.|++++|.+.+ +
T Consensus 91 ~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~-----------------------~~~l~~l~~L~~L~Ls~N~i~~--~ 143 (263)
T 1xeu_A 91 SVNRNRLKNLNGIPS--ACLSRLFLDNNELRD-----------------------TDSLIHLKNLEILSIRNNKLKS--I 143 (263)
T ss_dssp ECCSSCCSCCTTCCC--SSCCEEECCSSCCSB-----------------------SGGGTTCTTCCEEECTTSCCCB--C
T ss_pred ECCCCccCCcCcccc--CcccEEEccCCccCC-----------------------ChhhcCcccccEEECCCCcCCC--C
Confidence 999999888776444 889999998886432 1346778899999999998865 4
Q ss_pred ccccCCCCCCCEEeCCCCCCcccchhhhccCCCcEEecCCCc
Q 001979 679 PNDLGSLSALTNLTLSRNNFFSLPASINQLSRLETLNIDYCN 720 (987)
Q Consensus 679 p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 720 (987)
+ .+..+++|+.|+|++|.++.+ ..+..+++|+.|++++|+
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 4 678889999999999999888 578889999999999865
No 114
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.51 E-value=5.7e-13 Score=150.71 Aligned_cols=283 Identities=12% Similarity=0.082 Sum_probs=171.9
Q ss_pred CCCCCccccchhHHHHHHHhcCC--CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC-----CcceEEEEehHhhhhccC
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTG--LDEARILGICGMGGIGKTTLARFVFDNISYQF-----DDGSSFLANVREVSQTRG 79 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~~~~~~~~~ 79 (987)
..++.++||+.+++++..++... ....+.+.|+|++|+||||+|+.+++...... ....++++ ......
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 91 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRET 91 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCS
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCC
Confidence 34588999999999999988542 34456889999999999999999999764431 22455665 333445
Q ss_pred HHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhc--CCceEEEEeCCCChH----H---HHHHhcCCCCC--CCCcEEE
Q 001979 80 LVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLR--HKRVLLVIDDVDEFD----Q---LQALAGQRDWF--GLGSRII 148 (987)
Q Consensus 80 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~----~---~~~l~~~~~~~--~~gs~Ii 148 (987)
...+...++..+.........+..+....+.+.+. +++.+|||||++... . +..+....... ..+..+|
T Consensus 92 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp HHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEE
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEE
Confidence 56677777777533221112223344556666663 468899999997743 2 22223222111 4466788
Q ss_pred EEeCCccccccc------CcC-ceEEcCCCCHHHHHHHHHHhhcc---CCCCCChHHHHHHHHHHHhC---CCchhH-HH
Q 001979 149 ITTRDRHLLVRC------DVE-DTYMVEKLNYNEALHLFSWKAFR---KGHPTDGYFELSHSMVNYAD---GLPLAL-EI 214 (987)
Q Consensus 149 iTtR~~~v~~~~------~~~-~~~~l~~L~~~ea~~Lf~~~a~~---~~~~~~~~~~~~~~i~~~~~---G~PLal-~~ 214 (987)
.||+........ ... ..+.+++++.++..+++...+.. .....+ +..+.++++++ |.|..+ .+
T Consensus 172 ~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~ 248 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDL 248 (387)
T ss_dssp EECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHH
T ss_pred EEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHH
Confidence 888776322111 112 47899999999999999987532 222222 35677788887 999433 32
Q ss_pred Hhhhh---c--C---CCHHHHHHHHHhhhcCCCchHHHHHHHhHhCccHHHHHHHhheeeccCCCC---HH----HHHHH
Q 001979 215 LGSFL---F--A---RSKAEWKDALDRLKYVPDQKIFEILKISYDGLQETEKKIFLDIACFFKGKD---KD----QVREL 279 (987)
Q Consensus 215 l~~~L---~--~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~---~~----~l~~~ 279 (987)
+.... . + -+.+.++.++.... ...+.-++.+|+++++..++.++.+.++.+ .. ....+
T Consensus 249 l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 249 LRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 22221 1 1 15667777666542 234566789999999998888885544432 22 22223
Q ss_pred HHhCCCCc------cccchhhhcccceEEe
Q 001979 280 LDSCDFYP------EIGISVLIDKCIITLS 303 (987)
Q Consensus 280 ~~~~~~~~------~~~~~~L~~~~Li~~~ 303 (987)
....|..+ ...++.|...+++...
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 33333221 2346777777887764
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=1.5e-13 Score=140.83 Aligned_cols=176 Identities=18% Similarity=0.203 Sum_probs=140.8
Q ss_pred EEEecCcccCCCCCcCCcccceEEecCCCCCCCCCC-C-CCCCceEEEcCCCCccccccc-cCCCCCCCEEecCCCCCCC
Q 001979 381 LLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLPSN-F-QPERLFKLNICYSLVEQLWQG-VQNMRHLKFIKLSHSVHLT 457 (987)
Q Consensus 381 ~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~~~ 457 (987)
.++.+++.+......+++.+++|++.++.+..+|.. | .+.+|++|++++|.++.++.. +..+++|++|+|++|.+..
T Consensus 11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc
Confidence 344555555554555677899999999999998875 3 789999999999999988764 6889999999999998886
Q ss_pred CCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcc
Q 001979 458 KTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEE 536 (987)
Q Consensus 458 ~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~ 536 (987)
..+. +.++++|++|++++|......+..+..+++|++|++++| .++.+|... +..+++|+.|++++|.+.
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~-------~~~l~~L~~L~l~~N~~~- 161 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGV-------FDRLTSLQYIWLHDNPWD- 161 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTT-------TTTCTTCCEEECCSCCBC-
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHH-------hccCCCccEEEecCCCee-
Confidence 6665 789999999999998665544455889999999999998 455566542 378899999999999664
Q ss_pred cCccccCCCCCCEEeccCCCCCcccCccCCCCCC
Q 001979 537 IPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRS 570 (987)
Q Consensus 537 lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 570 (987)
+.+++|++|+++.|...+.+|..++.++.
T Consensus 162 -----~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 -----CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -----CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -----cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 45678899999998888899988776655
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=8.4e-14 Score=141.20 Aligned_cols=148 Identities=11% Similarity=0.152 Sum_probs=120.1
Q ss_pred ccceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCC-CCCCCCCCcccEEeccCCc
Q 001979 399 ELRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTK-TPDFTGVPKLERLVLDGCT 477 (987)
Q Consensus 399 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~-~~~~~~l~~L~~L~L~~~~ 477 (987)
.|+.|++.++.+..+|....+.+|++|++++|.++.++ .+..+++|++|++++|.+... ++.+..+++|++|++++|.
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence 45555555566666663336788999999999877664 678899999999999988764 4559999999999999998
Q ss_pred CCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCC
Q 001979 478 NLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKK 557 (987)
Q Consensus 478 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~ 557 (987)
.....+..++.+++|++|++++|..++.+|. + ..+++|+.|++++|.++.++ .+..+++|++|++++|..
T Consensus 124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-l--------~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMP-L--------KTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CBGGGHHHHTTCSSCCEEECCSCTBCCCCGG-G--------GGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred cCcHhHHHHhhCCCCCEEEccCCCCccccHh-h--------cCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 8777788899999999999999976777763 3 78999999999999999887 688888888888888753
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=3.2e-13 Score=139.44 Aligned_cols=151 Identities=24% Similarity=0.311 Sum_probs=87.9
Q ss_pred ceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCC
Q 001979 525 LQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTA 604 (987)
Q Consensus 525 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~ 604 (987)
+.++++++.++.+|..+. ++|+.|++++|......+..+..+++|+.|++++|......|..+..+++|+.|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456666667777766543 567777777766555445567777777777777776655556777777777777777777
Q ss_pred CCCCCcc-ccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccC
Q 001979 605 IRRPPST-IVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLG 683 (987)
Q Consensus 605 i~~~p~~-i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~ 683 (987)
++.+|.. +..+++|+.|+|++|..... .+..+..+++|+.|+|++|.+.. ..+..+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~---------------------~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~ 149 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCL---------------------RVDAFQDLHNLNLLSLYDNKLQT-IAKGTFS 149 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCC---------------------CTTTTTTCTTCCEEECCSSCCSC-CCTTTTT
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEe---------------------CHHHcCCCCCCCEEECCCCcCCE-ECHHHHh
Confidence 7766544 34455555555555442211 11234444555555555555532 1222344
Q ss_pred CCCCCCEEeCCCCCCc
Q 001979 684 SLSALTNLTLSRNNFF 699 (987)
Q Consensus 684 ~l~~L~~L~L~~n~l~ 699 (987)
.+++|+.|+|++|.+.
T Consensus 150 ~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 150 PLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred CCCCCCEEEeCCCCcC
Confidence 4555555555555443
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=3.6e-13 Score=140.02 Aligned_cols=150 Identities=23% Similarity=0.255 Sum_probs=90.5
Q ss_pred ccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCC
Q 001979 523 RLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGG 602 (987)
Q Consensus 523 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~ 602 (987)
+.+.++++++.++.+|..+. ++|++|+|++|...+..|..+..+++|+.|++++|......+..+..+++|+.|+|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 34567777777777776543 6677777777666665566666666666666666654222223455666666666666
Q ss_pred CCCCCCCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCcccc
Q 001979 603 TAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDL 682 (987)
Q Consensus 603 ~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l 682 (987)
|.++.++.. .+..+++|+.|+|++|.+. .+|..+
T Consensus 98 N~l~~l~~~--------------------------------------------~~~~l~~L~~L~Ls~N~l~--~lp~~~ 131 (229)
T 3e6j_A 98 NQLTVLPSA--------------------------------------------VFDRLVHLKELFMCCNKLT--ELPRGI 131 (229)
T ss_dssp SCCCCCCTT--------------------------------------------TTTTCTTCCEEECCSSCCC--SCCTTG
T ss_pred CcCCccChh--------------------------------------------HhCcchhhCeEeccCCccc--ccCccc
Confidence 666554432 1344555555666666554 256666
Q ss_pred CCCCCCCEEeCCCCCCcccch-hhhccCCCcEEecCCCc
Q 001979 683 GSLSALTNLTLSRNNFFSLPA-SINQLSRLETLNIDYCN 720 (987)
Q Consensus 683 ~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 720 (987)
..+++|+.|+|++|+++.+|. .+..+++|+.|++++|+
T Consensus 132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 666666666666666666653 35666666666666654
No 119
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=5.8e-13 Score=150.60 Aligned_cols=286 Identities=15% Similarity=0.096 Sum_probs=170.0
Q ss_pred CCCCCccccchhHHHHHHHhcCC--CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC--CcceEEEEehHhhhhccCHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTG--LDEARILGICGMGGIGKTTLARFVFDNISYQF--DDGSSFLANVREVSQTRGLVA 82 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~ 82 (987)
..++.++||+.+++++.+++... ....+.+.|+|++|+||||||+.+++.+...+ ....+|+. .........
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHH
Confidence 34588999999999999988642 24456899999999999999999999876543 22456665 333334445
Q ss_pred HHHHHHHHHhcCCCcccccchhhHHHHHHHhc--CCceEEEEeCCCCh------HHHHHHhcCCCC-CCCCcEEEEEeCC
Q 001979 83 LQEQLVSEILLDKNVKIWDVHKGCHMIRIKLR--HKRVLLVIDDVDEF------DQLQALAGQRDW-FGLGSRIIITTRD 153 (987)
Q Consensus 83 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~------~~~~~l~~~~~~-~~~gs~IiiTtR~ 153 (987)
+...++..+.........+..+....+.+.+. +++.+|||||++.. +.+..+...... ...+..+|+||++
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 55555554321111111123333455555554 45899999998653 234444332211 2346677888887
Q ss_pred cccccccC-------cCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhC---CCchhHHHHhhhhc---
Q 001979 154 RHLLVRCD-------VEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYAD---GLPLALEILGSFLF--- 220 (987)
Q Consensus 154 ~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---G~PLal~~l~~~L~--- 220 (987)
........ ....+++++++.++..+++...+........-..+..+.++++++ |.|..+..+.....
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 64332221 114899999999999999988653211111122356677777777 99984443332221
Q ss_pred ---C---CCHHHHHHHHHhhhcCCCchHHHHHHHhHhCccHHHHHHHhheeeccC-CC---CHHHH----HHHHHhCCCC
Q 001979 221 ---A---RSKAEWKDALDRLKYVPDQKIFEILKISYDGLQETEKKIFLDIACFFK-GK---DKDQV----RELLDSCDFY 286 (987)
Q Consensus 221 ---~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~-~~---~~~~l----~~~~~~~~~~ 286 (987)
+ -+.+.++.++.... ...+.-.+.+++..++..+..++.+.+ +. ....+ ..+....|..
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~ 325 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVE 325 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCC
Confidence 1 24556666655442 245666788999999999888886543 22 12222 2222222222
Q ss_pred c------cccchhhhcccceEEe
Q 001979 287 P------EIGISVLIDKCIITLS 303 (987)
Q Consensus 287 ~------~~~~~~L~~~~Li~~~ 303 (987)
+ ...++.|.+.++|...
T Consensus 326 ~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 326 AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 1 3447778888888753
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=4.9e-16 Score=183.33 Aligned_cols=192 Identities=16% Similarity=0.211 Sum_probs=102.7
Q ss_pred CCCCceEEEcCCCCccccccccCCCCCCCEEecCCCC-------------CCCCCCC-CCCCCcccEEe-ccCCcCCccc
Q 001979 418 QPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSV-------------HLTKTPD-FTGVPKLERLV-LDGCTNLSFV 482 (987)
Q Consensus 418 ~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~-------------~~~~~~~-~~~l~~L~~L~-L~~~~~l~~~ 482 (987)
..++|+.|+|++|.++.+|..++++++|+.|++++|. ..+..|. +..+++|+.|+ ++.+ .+..+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccchh
Confidence 4678888999999999999999999999999887664 1222222 34455555555 2221 11111
Q ss_pred cC------cccc--CCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccC
Q 001979 483 HP------SIGL--LKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRD 554 (987)
Q Consensus 483 ~~------~i~~--l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 554 (987)
+. .+.. ...|+.|+|++| .++.+|. + +.+++|+.|++++|.++.+|..++.+++|+.|+|++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~--------~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-L--------EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-G--------GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS
T ss_pred hhhhhhcccccccCccCceEEEecCC-CCCCCcC-c--------cccccCcEeecCcccccccchhhhcCCCCCEEECCC
Confidence 10 0000 113555555554 3334443 3 455555555555555555555555555555555555
Q ss_pred CCCCcccCccCCCCCCCCEEEecCCCCCCcc-cccccCCCCCcEeeCCCCCCCCCCccc----cCCCCCcEEE
Q 001979 555 CKKLVSLPSSISDLRSLKVLNLNGCSKLEEV-PENLGHIASLENLDLGGTAIRRPPSTI----VLLENLKELS 622 (987)
Q Consensus 555 ~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~L~~~~i~~~p~~i----~~l~~L~~L~ 622 (987)
|...+ +| .++.+++|+.|++++|...... |..++.+++|+.|++++|.+++.|+.+ ..+++|+.|+
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 54333 44 4555555555555555433332 555555555555555555555544332 2245555553
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=2.2e-15 Score=177.71 Aligned_cols=212 Identities=17% Similarity=0.171 Sum_probs=123.7
Q ss_pred CCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhh-----hhhHHHhhhccccceee-cCCcCCcc
Q 001979 463 TGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIE-----WASLEIVQNAKRLLQLH-LDQTSIEE 536 (987)
Q Consensus 463 ~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~-----~~~l~~~~~l~~L~~L~-L~~~~i~~ 536 (987)
..+++|+.|+|++|. +..+|..++.+++|+.|++++|..+..+|.... ......++.+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 456777777777754 457778888888888888766532222221100 00012345566666666 44443332
Q ss_pred cCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCC
Q 001979 537 IPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLE 616 (987)
Q Consensus 537 lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~ 616 (987)
++ .+.+++|. +..+|. ..|+.|++++|. +..+|. ++.+++|+.|++++|.++.+|..+..++
T Consensus 425 L~----------~l~l~~n~-i~~l~~-----~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 486 (567)
T 1dce_A 425 LR----------SKFLLENS-VLKMEY-----ADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALR 486 (567)
T ss_dssp HH----------HHHHHHHH-HHHHHH-----TTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCT
T ss_pred hh----------hhhhhccc-ccccCc-----cCceEEEecCCC-CCCCcC-ccccccCcEeecCcccccccchhhhcCC
Confidence 22 11122211 111111 136666666653 334555 6667777777777777777777777777
Q ss_pred CCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCC
Q 001979 617 NLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRN 696 (987)
Q Consensus 617 ~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n 696 (987)
+|+.|+|++|.... ++.+..+++|+.|+|++|.+.....|..++.+++|+.|+|++|
T Consensus 487 ~L~~L~Ls~N~l~~-----------------------lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 487 CLEVLQASDNALEN-----------------------VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp TCCEEECCSSCCCC-----------------------CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCEEECCCCCCCC-----------------------CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 77777776665321 1245667777777777777754212778888888888888888
Q ss_pred CCcccchhh----hccCCCcEEec
Q 001979 697 NFFSLPASI----NQLSRLETLNI 716 (987)
Q Consensus 697 ~l~~lp~~i----~~l~~L~~L~L 716 (987)
.++.+|..+ ..+++|+.|++
T Consensus 544 ~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 544 SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCccHHHHHHHHCcccCccCC
Confidence 888766533 34778887754
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=7.6e-13 Score=137.55 Aligned_cols=145 Identities=19% Similarity=0.238 Sum_probs=68.9
Q ss_pred EEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCcccc-CccccCCCCcEEeCcCCCC
Q 001979 425 LNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVH-PSIGLLKRLKVLNMKECIR 502 (987)
Q Consensus 425 L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~~ 502 (987)
++.+++.+..+|.++. ++|++|+|++|.+....|. |.++++|++|+|++|.. ..++ ..+..+++|++|+|++| .
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N-~ 99 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN-Q 99 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS-C
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCC-c
Confidence 3334444444443332 4455555555554444333 44555555555555443 2222 23455555555555554 3
Q ss_pred CccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCC
Q 001979 503 IKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCS 580 (987)
Q Consensus 503 l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~ 580 (987)
++.+|... +..+++|+.|++++|.++.+|..+..+++|++|+|++|......+..+..+++|+.|++++|.
T Consensus 100 l~~l~~~~-------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 100 LTVLPSAV-------FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCTTT-------TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCccChhH-------hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 33333321 244555555555555555555555555555555555554333222334445555555555443
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=7.3e-13 Score=136.69 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=33.1
Q ss_pred EEcCCCCccccccccCCCCCCCEEecCCCCCCCCCC-CCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCC
Q 001979 425 LNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTP-DFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKEC 500 (987)
Q Consensus 425 L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c 500 (987)
++++++.++.+|..+. ++|+.|+|++|.+....+ .|..+++|++|+|++|......|..+..+++|++|+|++|
T Consensus 16 v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3334444444443322 344445554444443333 2444455555555554433333444555555555555554
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=4.6e-13 Score=149.67 Aligned_cols=170 Identities=19% Similarity=0.186 Sum_probs=88.3
Q ss_pred eeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCC-CCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCC
Q 001979 526 QLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSIS-DLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTA 604 (987)
Q Consensus 526 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~ 604 (987)
.++++++.++.+|..+. +.++.|+|++|......+..+. .+++|+.|++++|......+..+..+++|+.|+|++|.
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 34444444444443322 2344455554443333333333 45555555555544333333445555555555555555
Q ss_pred CCCCCc-cccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCcccc-
Q 001979 605 IRRPPS-TIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDL- 682 (987)
Q Consensus 605 i~~~p~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l- 682 (987)
++.++. .+..+++|+.|+|++|.... ..+..+..+++|+.|+|++|.+.. +|..+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~---------------------~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~ 156 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVV---------------------VDRNAFEDMAQLQKLYLSQNQISR--FPVELI 156 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCE---------------------ECTTTTTTCTTCCEEECCSSCCCS--CCGGGT
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccE---------------------ECHHHhCCcccCCEEECCCCcCCe--eCHHHh
Confidence 554433 34555555555555554221 112345566677777777776653 54443
Q ss_pred ---CCCCCCCEEeCCCCCCcccch-hhhccCC--CcEEecCCCc
Q 001979 683 ---GSLSALTNLTLSRNNFFSLPA-SINQLSR--LETLNIDYCN 720 (987)
Q Consensus 683 ---~~l~~L~~L~L~~n~l~~lp~-~i~~l~~--L~~L~L~~c~ 720 (987)
..+++|+.|+|++|+++.+|. .+..++. |+.|+|++|+
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 457777777777777777663 4566665 3667777754
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=6.9e-13 Score=136.87 Aligned_cols=147 Identities=20% Similarity=0.223 Sum_probs=79.8
Q ss_pred eEEecCCCCCCCCCCCCCCCceEEEcCCCCcccccc--ccCCCCCCCEEecCCCCCCCCCC-CCCCCCcccEEeccCCcC
Q 001979 402 LLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQ--GVQNMRHLKFIKLSHSVHLTKTP-DFTGVPKLERLVLDGCTN 478 (987)
Q Consensus 402 ~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~ 478 (987)
.++++++.+..+|..+ +..+++|++++|.++.++. .+..+++|++|+|++|.+....+ .|.++++|++|+|++|..
T Consensus 15 ~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 4555555555555543 2344556666666655522 24555555555555555444433 244555555555555443
Q ss_pred CccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCccc-CccccCCCCCCEEeccCCCC
Q 001979 479 LSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEI-PPSIKFLSRLTVLTLRDCKK 557 (987)
Q Consensus 479 l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~ 557 (987)
....+..++ .+++|++|++++|.++.+ |..+..+++|++|+|++|..
T Consensus 94 ~~~~~~~~~--------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 94 ENVQHKMFK--------------------------------GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp CCCCGGGGT--------------------------------TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred CccCHhHhc--------------------------------CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence 333333344 445555555555555544 34456666666666666666
Q ss_pred CcccCccCCCCCCCCEEEecCCCC
Q 001979 558 LVSLPSSISDLRSLKVLNLNGCSK 581 (987)
Q Consensus 558 l~~lp~~l~~l~~L~~L~l~~c~~ 581 (987)
.+..|..+..+++|+.|++++|..
T Consensus 142 ~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 142 TTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CEECHHHhcCCCCCCEEEecCcCC
Confidence 555566666777777777776654
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=2.8e-13 Score=151.38 Aligned_cols=177 Identities=19% Similarity=0.206 Sum_probs=95.0
Q ss_pred ceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccc-cC-CCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCc
Q 001979 401 RLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQG-VQ-NMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCT 477 (987)
Q Consensus 401 r~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~-~~-~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~ 477 (987)
+.+++.++.+..+|..+ +..++.|+|++|.++.++.. +. .+++|++|+|++|.+....+. |.++++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 45666666666666544 33466677777777666543 33 666666666666665555443 6666666666666654
Q ss_pred CCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCC
Q 001979 478 NLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKK 557 (987)
Q Consensus 478 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~ 557 (987)
.....+..+..+++|++|+|++|......|..+ ..+++|+.|+|++|.++.+|..+..
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--------~~l~~L~~L~L~~N~l~~l~~~~~~-------------- 157 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--------EDMAQLQKLYLSQNQISRFPVELIK-------------- 157 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--------TTCTTCCEEECCSSCCCSCCGGGTC--------------
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--------CCcccCCEEECCCCcCCeeCHHHhc--------------
Confidence 333333345555555555555553222222222 3444444444444444444432200
Q ss_pred CcccCccCCCCCCCCEEEecCCCCCCcccccccCCCC--CcEeeCCCCCCC
Q 001979 558 LVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIAS--LENLDLGGTAIR 606 (987)
Q Consensus 558 l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~--L~~L~L~~~~i~ 606 (987)
.+..+++|+.|+|++|......+..+..++. |+.|++++|.+.
T Consensus 158 ------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 ------DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ----------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ------CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 0135667777777766543333345566665 477888888765
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=7.9e-13 Score=136.41 Aligned_cols=151 Identities=16% Similarity=0.200 Sum_probs=107.2
Q ss_pred EEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCC
Q 001979 424 KLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRI 503 (987)
Q Consensus 424 ~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l 503 (987)
.++++++.++.+|..+. ..+++|+|++|.+....+. ..++.+++|++|+|++|. +
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~----------------------~~~~~l~~L~~L~L~~N~-i 69 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEAT----------------------GIFKKLPQLRKINFSNNK-I 69 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCC----------------------CCGGGCTTCCEEECCSSC-C
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCch----------------------hhhccCCCCCEEECCCCc-C
Confidence 56666666666665442 3345555555554433221 124455555555555543 3
Q ss_pred ccCCc-hhhhhhHHHhhhccccceeecCCcCCcccCcc-ccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCC
Q 001979 504 KSFPA-EIEWASLEIVQNAKRLLQLHLDQTSIEEIPPS-IKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSK 581 (987)
Q Consensus 504 ~~lp~-~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~ 581 (987)
+.++. .+ ..+++|++|+|++|.++.++.. +..+++|++|+|++|...+..|..+..+++|+.|++++|..
T Consensus 70 ~~i~~~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 70 TDIEEGAF--------EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp CEECTTTT--------TTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred CEECHHHh--------CCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence 33332 22 5666777777777777777654 88999999999999998888888999999999999999987
Q ss_pred CCcccccccCCCCCcEeeCCCCCCCC
Q 001979 582 LEEVPENLGHIASLENLDLGGTAIRR 607 (987)
Q Consensus 582 l~~lp~~l~~l~~L~~L~L~~~~i~~ 607 (987)
....|..+..+++|+.|++++|.+..
T Consensus 142 ~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 142 TTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CEECHHHhcCCCCCCEEEecCcCCcC
Confidence 77778999999999999999998764
No 128
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=9.1e-14 Score=147.76 Aligned_cols=168 Identities=21% Similarity=0.245 Sum_probs=86.4
Q ss_pred CCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCc
Q 001979 419 PERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMK 498 (987)
Q Consensus 419 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~ 498 (987)
+.+++.++++++.++.++ .+..+++|++|++++|.+. .++.+..+++|++|+|++|.. ..++. ++.+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-cchHHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEECC
Confidence 444555666666666665 4556677777777776543 344566666666666666543 33333 6666666666666
Q ss_pred CCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecC
Q 001979 499 ECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNG 578 (987)
Q Consensus 499 ~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~ 578 (987)
+| .++.+|... . .+|+.|++++|.++.++ .+..+++|+.|++++|...+ ++ .+..+++|+.|++++
T Consensus 94 ~N-~l~~l~~~~---------~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 94 RN-RLKNLNGIP---------S-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHG 159 (263)
T ss_dssp SS-CCSCCTTCC---------C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTT
T ss_pred CC-ccCCcCccc---------c-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCC
Confidence 65 333344311 1 55555555555555543 24555555555555544322 22 244444444444444
Q ss_pred CCCCCcccccccCCCCCcEeeCCCCCCC
Q 001979 579 CSKLEEVPENLGHIASLENLDLGGTAIR 606 (987)
Q Consensus 579 c~~l~~lp~~l~~l~~L~~L~L~~~~i~ 606 (987)
|..... ..+..+++|+.|++++|.+.
T Consensus 160 N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 160 NEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp SCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred CcCcch--HHhccCCCCCEEeCCCCccc
Confidence 433222 33444444444444444443
No 129
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.40 E-value=9.7e-12 Score=140.68 Aligned_cols=285 Identities=13% Similarity=0.070 Sum_probs=171.9
Q ss_pred CCCCccccchhHHHHHHHhcC----CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHH
Q 001979 8 ASEKLVGMDYRLEQIYLMLGT----GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 83 (987)
.++.++||+.+++++..++.. ..+..+.+.|+|++|+||||+|+.++...........+++. .........+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 457899999999999998864 22233489999999999999999999987654321456665 3334455666
Q ss_pred HHHHHHHHhcCCCcccccchhhHHHHHHHhc--CCceEEEEeCCCCh--HHHHHHhcCCCCCC----CCcEEEEEeCCcc
Q 001979 84 QEQLVSEILLDKNVKIWDVHKGCHMIRIKLR--HKRVLLVIDDVDEF--DQLQALAGQRDWFG----LGSRIIITTRDRH 155 (987)
Q Consensus 84 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~--~~~~~l~~~~~~~~----~gs~IiiTtR~~~ 155 (987)
...++..+.................+.+.+. +++.+|||||++.. +.+..+........ .+..||++|++..
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 6777666422211111223344445555543 56889999999763 44555544433211 4778888888764
Q ss_pred cccccC-------cCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHh---------CCCchhHHHHhhhh
Q 001979 156 LLVRCD-------VEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYA---------DGLPLALEILGSFL 219 (987)
Q Consensus 156 v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~---------~G~PLal~~l~~~L 219 (987)
+..... ....+++++++.++..+++...+........-..+..+.+++++ +|.|..+..+....
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 322221 12379999999999999998876321111111236778899999 79876554443322
Q ss_pred c------C---CCHHHHHHHHHhhhcCCCchHHHHHHHhHhCccHHHHHHHhheeecc---CC--CCHHHHHHH----HH
Q 001979 220 F------A---RSKAEWKDALDRLKYVPDQKIFEILKISYDGLQETEKKIFLDIACFF---KG--KDKDQVREL----LD 281 (987)
Q Consensus 220 ~------~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~---~~--~~~~~l~~~----~~ 281 (987)
. + -+.+....++...... . +.-.++.|+.+++.++..++.+. .+ .....+.+. ..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~~~---~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVLFG---I----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHSCC---C----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHhhh---h----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 1 1 1334444444433221 1 22335678888888888888664 22 233333332 22
Q ss_pred hCCCCc------cccchhhhcccceEEe
Q 001979 282 SCDFYP------EIGISVLIDKCIITLS 303 (987)
Q Consensus 282 ~~~~~~------~~~~~~L~~~~Li~~~ 303 (987)
..+..+ ...+..|.++++|...
T Consensus 324 ~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 324 EYGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HTTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HcCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 233221 2457888999999874
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=3e-13 Score=164.69 Aligned_cols=163 Identities=14% Similarity=0.109 Sum_probs=94.1
Q ss_pred EEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCc
Q 001979 425 LNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIK 504 (987)
Q Consensus 425 L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~ 504 (987)
+++..|.+...+..+..+.+|+.|+|++|.+....+.+.++++|++|+|++|... .+|..++.+++|++|+|++|. ++
T Consensus 206 ~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~ 283 (727)
T 4b8c_D 206 DDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CS
T ss_pred ccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CC
Confidence 3444455554566677777777888877776644445667777777777776544 677777777788888887774 44
Q ss_pred cCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCC-CCEEEecCCCCCC
Q 001979 505 SFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRS-LKVLNLNGCSKLE 583 (987)
Q Consensus 505 ~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~-L~~L~l~~c~~l~ 583 (987)
.+|..+ +.+++|++|+|++|.|+.+|..++.+++|++|+|++|...+.+|..+..+.. +..|++++|....
T Consensus 284 ~lp~~~--------~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 284 SLPAEL--------GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp SCCSSG--------GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred ccChhh--------cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 677665 6777777888877777777777777888888888877776666665433211 1235566665555
Q ss_pred cccccccCCCCCcEeeCCCC
Q 001979 584 EVPENLGHIASLENLDLGGT 603 (987)
Q Consensus 584 ~lp~~l~~l~~L~~L~L~~~ 603 (987)
.+|. .|+.|+++.|
T Consensus 356 ~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 356 PLPH------ERRFIEINTD 369 (727)
T ss_dssp CCCC------C---------
T ss_pred cCcc------ccceeEeecc
Confidence 5554 3444555544
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=3.1e-12 Score=125.92 Aligned_cols=108 Identities=22% Similarity=0.189 Sum_probs=52.2
Q ss_pred CCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccC--cc
Q 001979 463 TGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIP--PS 540 (987)
Q Consensus 463 ~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp--~~ 540 (987)
..+++|++|++++|.. ..+ ..++.+++|++|++++|.....+|..+ ..+++|++|++++|.++.+| ..
T Consensus 46 ~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~ 115 (168)
T 2ell_A 46 AEFVNLEFLSLINVGL-ISV-SNLPKLPKLKKLELSENRIFGGLDMLA--------EKLPNLTHLNLSGNKLKDISTLEP 115 (168)
T ss_dssp GGGGGCCEEEEESSCC-CCC-SSCCCCSSCCEEEEESCCCCSCCCHHH--------HHCTTCCEEECBSSSCCSSGGGGG
T ss_pred HhCCCCCEEeCcCCCC-CCh-hhhccCCCCCEEECcCCcCchHHHHHH--------hhCCCCCEEeccCCccCcchhHHH
Confidence 4444444444444432 222 344444455555555443222233222 34555555555555555544 44
Q ss_pred ccCCCCCCEEeccCCCCCcccC---ccCCCCCCCCEEEecCCC
Q 001979 541 IKFLSRLTVLTLRDCKKLVSLP---SSISDLRSLKVLNLNGCS 580 (987)
Q Consensus 541 i~~l~~L~~L~L~~~~~l~~lp---~~l~~l~~L~~L~l~~c~ 580 (987)
+..+++|++|++++|......+ ..+..+++|+.|++++|.
T Consensus 116 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 116 LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp GSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 5556666666666654433222 245566666666666654
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=7.9e-13 Score=160.98 Aligned_cols=150 Identities=17% Similarity=0.140 Sum_probs=100.9
Q ss_pred CCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCcc
Q 001979 461 DFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPS 540 (987)
Q Consensus 461 ~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~ 540 (987)
.+..+++|+.|+|++|... .+|..+..+++|++|+|++| .+..+|..+ ..+++|++|+|++|.|+.+|..
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~--------~~l~~L~~L~Ls~N~l~~lp~~ 288 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN-SLTELPAEI--------KNLSNLRVLDLSHNRLTSLPAE 288 (727)
T ss_dssp ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS-CCSCCCGGG--------GGGTTCCEEECTTSCCSSCCSS
T ss_pred hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC-cCcccChhh--------hCCCCCCEEeCcCCcCCccChh
Confidence 3777888888888887644 67777778888888888887 444777765 7788888888888888888888
Q ss_pred ccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCC-CcEeeCCCCCCCCCCccccCCCCCc
Q 001979 541 IKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIAS-LENLDLGGTAIRRPPSTIVLLENLK 619 (987)
Q Consensus 541 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~-L~~L~L~~~~i~~~p~~i~~l~~L~ 619 (987)
++.+++|++|+|++|.. +.+|..|+.+++|+.|+|++|.....+|..+..+.. +..|++++|.+.... ...|+
T Consensus 289 ~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~-----p~~l~ 362 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL-----PHERR 362 (727)
T ss_dssp GGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC-----CCC--
T ss_pred hcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC-----ccccc
Confidence 88888888888888754 577877888888888888888777677766644322 223567777665321 23455
Q ss_pred EEEccCC
Q 001979 620 ELSFHGC 626 (987)
Q Consensus 620 ~L~L~~~ 626 (987)
.|+++.|
T Consensus 363 ~l~l~~n 369 (727)
T 4b8c_D 363 FIEINTD 369 (727)
T ss_dssp -------
T ss_pred eeEeecc
Confidence 5666554
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=5.2e-12 Score=121.53 Aligned_cols=126 Identities=18% Similarity=0.164 Sum_probs=63.0
Q ss_pred CCceEEEcCCCCcc--ccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeC
Q 001979 420 ERLFKLNICYSLVE--QLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNM 497 (987)
Q Consensus 420 ~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 497 (987)
.+|++|++++|.+. .+|..+..+++|++|++++|.+... +.+..+++|++|++++|.....+|..++.+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 44555555555555 4555555666666666666654443 44555556666666555444434444444555555555
Q ss_pred cCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCc----cccCCCCCCEEecc
Q 001979 498 KECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPP----SIKFLSRLTVLTLR 553 (987)
Q Consensus 498 ~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~L~ 553 (987)
++|. ++.+|. ...+..+++|++|++++|.++.+|. .+..+++|++|+++
T Consensus 96 s~N~-i~~~~~------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNK-IKDLST------IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSC-CCSHHH------HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCc-CCChHH------HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5542 222210 0112444555555555555544443 34444445444443
No 134
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.27 E-value=5.2e-11 Score=125.02 Aligned_cols=200 Identities=14% Similarity=0.075 Sum_probs=121.2
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
|...++++||+..++.+..++..+. ..+.+.|+|++|+||||+|+.+++.+...+. ...+ . . ..... ..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~-~~~~-~----~---~~~~~-~~ 87 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITAT-P----C---GVCDN-CR 87 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTC-SCSS-C----C---SCSHH-HH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCC-CCCC-C----C---cccHH-HH
Confidence 3445679999999999999987532 2357889999999999999999997654332 1000 0 0 00000 00
Q ss_pred HHHHHHhcCCCccc--c--cchhhHHHHHHHh-----cCCceEEEEeCCCC--hHHHHHHhcCCCCCCCCcEEEEEeCCc
Q 001979 86 QLVSEILLDKNVKI--W--DVHKGCHMIRIKL-----RHKRVLLVIDDVDE--FDQLQALAGQRDWFGLGSRIIITTRDR 154 (987)
Q Consensus 86 ~ll~~l~~~~~~~~--~--~~~~~~~~l~~~L-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTtR~~ 154 (987)
.+..... ..-... . ........+.+.+ .+++.+||+||++. ...++.+...+.....+.++|+||+..
T Consensus 88 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~ 166 (250)
T 1njg_A 88 EIEQGRF-VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 166 (250)
T ss_dssp HHHTTCC-SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCG
T ss_pred HHhccCC-cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 0000000 000000 0 0001111111211 34679999999966 445666655444445678899998765
Q ss_pred ccccc--cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhhh
Q 001979 155 HLLVR--CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSFL 219 (987)
Q Consensus 155 ~v~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L 219 (987)
..... ......+++++++.+|..+++...+.......+ .+..+.|+++++|+|..+..+...+
T Consensus 167 ~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 167 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE--PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 42221 123468999999999999999988754332211 3567899999999999988776543
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=1e-11 Score=122.13 Aligned_cols=129 Identities=20% Similarity=0.234 Sum_probs=83.1
Q ss_pred CCCcEEeCcCCCCC-ccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCC
Q 001979 490 KRLKVLNMKECIRI-KSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDL 568 (987)
Q Consensus 490 ~~L~~L~L~~c~~l-~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l 568 (987)
++|++|++++|... ..+|..+ ..+++|+.|++++|.++.+ ..+..+++|++|++++|.....+|..+..+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~--------~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLT--------AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCC--------GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred ccCCEEECCCCCCChhhHHHHH--------HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 45555555555322 2445433 4556666666666666655 556667777777777776665566656667
Q ss_pred CCCCEEEecCCCCCCccc--ccccCCCCCcEeeCCCCCCCCCCc----cccCCCCCcEEEccCCCC
Q 001979 569 RSLKVLNLNGCSKLEEVP--ENLGHIASLENLDLGGTAIRRPPS----TIVLLENLKELSFHGCKG 628 (987)
Q Consensus 569 ~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~L~~~~i~~~p~----~i~~l~~L~~L~L~~~~~ 628 (987)
++|+.|++++|.. ..+| ..+..+++|+.|++++|.+...|. .+..+++|+.|++++|..
T Consensus 95 ~~L~~L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 95 PNLTHLNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp TTCCEEECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCCCEEeccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 7777777777643 4433 567777777777777777777765 667777777777777764
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=1e-11 Score=119.42 Aligned_cols=104 Identities=23% Similarity=0.206 Sum_probs=64.9
Q ss_pred hccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCc-ccccccCCCCCcEe
Q 001979 520 NAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEE-VPENLGHIASLENL 598 (987)
Q Consensus 520 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L 598 (987)
.+++|+.|++++|.++.+ ..+..+++|++|++++|...+.+|..+..+++|++|++++|..... .+..+..+++|+.|
T Consensus 40 ~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 40 EFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp TCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred hcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 344444444444444444 4456666666666666665555565555667777777777654331 23667777777777
Q ss_pred eCCCCCCCCCCc----cccCCCCCcEEEcc
Q 001979 599 DLGGTAIRRPPS----TIVLLENLKELSFH 624 (987)
Q Consensus 599 ~L~~~~i~~~p~----~i~~l~~L~~L~L~ 624 (987)
++++|.+++.|. .+..+++|+.|+++
T Consensus 119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 119 DLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred eCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777777665 56777777777765
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=7.7e-11 Score=118.61 Aligned_cols=99 Identities=17% Similarity=0.233 Sum_probs=51.4
Q ss_pred ceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccc--cCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCc
Q 001979 401 RLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQG--VQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCT 477 (987)
Q Consensus 401 r~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~--~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~ 477 (987)
+.++++++.++.+|..+. .+|++|++++|.++.++.. +..+++|++|+|++|.+....|. |.++++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 445555556666665442 2556666666666555432 55555666666665555554443 5555555555555544
Q ss_pred CCccccCccccCCCCcEEeCcCC
Q 001979 478 NLSFVHPSIGLLKRLKVLNMKEC 500 (987)
Q Consensus 478 ~l~~~~~~i~~l~~L~~L~L~~c 500 (987)
.....+..++.+++|++|+|++|
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSS
T ss_pred CCccCHHHhcCCCCCCEEECCCC
Confidence 33333333444444444444444
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=7.5e-11 Score=118.68 Aligned_cols=126 Identities=21% Similarity=0.192 Sum_probs=77.0
Q ss_pred eEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCC--CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCC
Q 001979 423 FKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPD--FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKEC 500 (987)
Q Consensus 423 ~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~--~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c 500 (987)
++++++++.++++|..+.. +|++|+|++|.+....+. |..+++|++|+|++|......|..++.+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777777777765543 777777777766655553 566666666666666554444555556666666666555
Q ss_pred CCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCc-cccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCC
Q 001979 501 IRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPP-SIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGC 579 (987)
Q Consensus 501 ~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c 579 (987)
.++.++. .+..+++|++|+|++|...+..|..+..+++|+.|++++|
T Consensus 89 --------------------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 89 --------------------------------KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp --------------------------------CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred --------------------------------cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 4443332 2455666666666666555555656666666666666666
Q ss_pred CCC
Q 001979 580 SKL 582 (987)
Q Consensus 580 ~~l 582 (987)
...
T Consensus 137 ~l~ 139 (192)
T 1w8a_A 137 PFN 139 (192)
T ss_dssp CBC
T ss_pred Ccc
Confidence 543
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=2.9e-11 Score=119.92 Aligned_cols=129 Identities=13% Similarity=0.123 Sum_probs=63.7
Q ss_pred CCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCcc-ccCCCCcEEe
Q 001979 418 QPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSI-GLLKRLKVLN 496 (987)
Q Consensus 418 ~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i-~~l~~L~~L~ 496 (987)
.+.+|++|++++|.++.++......++|++|+|++|.+... +.+..+++|++|++++|.. ..+|+.+ +.+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcc-cccCcchhhcCCCCCEEE
Confidence 44555666666666655533222223666666666655443 4455556666666655433 2333332 5555555555
Q ss_pred CcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCcc----ccCCCCCCEEeccCC
Q 001979 497 MKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPS----IKFLSRLTVLTLRDC 555 (987)
Q Consensus 497 L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~L~~~ 555 (987)
+++| .++.+|. +..+..+++|+.|++++|.+..+|.. +..+++|+.|++++|
T Consensus 95 L~~N-~i~~~~~------~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 95 LTNN-SLVELGD------LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSC-CCCCGGG------GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCC-cCCcchh------hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 5555 2333333 00124455555555555555555443 444555555555444
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=1.3e-10 Score=116.91 Aligned_cols=124 Identities=22% Similarity=0.260 Sum_probs=93.4
Q ss_pred cEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCC
Q 001979 493 KVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLK 572 (987)
Q Consensus 493 ~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 572 (987)
++++++++ .++.+|..+ .++|+.|++++|.++.+|..+..+++|++|++++|......+..|..+++|+
T Consensus 13 ~~l~~~~~-~l~~ip~~~----------~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~ 81 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGI----------PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81 (193)
T ss_dssp TEEECTTS-CCSSCCSCC----------CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CEEEcCCC-CCCcCCCCC----------CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence 45666654 455666533 2467777777777777777788888888888888777666666788888888
Q ss_pred EEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCc-cccCCCCCcEEEccCCC
Q 001979 573 VLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPS-TIVLLENLKELSFHGCK 627 (987)
Q Consensus 573 ~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~-~i~~l~~L~~L~L~~~~ 627 (987)
.|++++|......|..+..+++|+.|+|++|.++.+|. .+..+++|+.|++++|.
T Consensus 82 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 88888887666556678888888888888888888766 46778888888888876
No 141
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.19 E-value=4.2e-10 Score=116.14 Aligned_cols=187 Identities=13% Similarity=0.089 Sum_probs=118.0
Q ss_pred CCCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-CCcceEEEEehHhhhhccCHHHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ-FDDGSSFLANVREVSQTRGLVALQ 84 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~ 84 (987)
|...+.++|++..++++.+++.... .+.+.|+|++|+|||++|+.+++.+... +....+.+. .....+...+.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 86 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN----ASDERGIDVVR 86 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE----TTCTTCHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec----cccccChHHHH
Confidence 3445789999999999999997642 2348899999999999999999976433 331223332 12222222221
Q ss_pred HHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCcccccc--c
Q 001979 85 EQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDRHLLVR--C 160 (987)
Q Consensus 85 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~~v~~~--~ 160 (987)
. .+........ ....++.+||+||++.. ...+.+...+.....+.++|+||+....... .
T Consensus 87 ~-~~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~ 150 (226)
T 2chg_A 87 H-KIKEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (226)
T ss_dssp H-HHHHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred H-HHHHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHH
Confidence 1 1111111000 01257889999999764 3444554444334567889999887532211 1
Q ss_pred CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 161 DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 161 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
.....+++++++.++..+++...+....... ..+..+.+++.++|.|..+..+.
T Consensus 151 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCceeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2234899999999999999988774333221 13567788999999998655443
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=2.1e-10 Score=126.23 Aligned_cols=240 Identities=13% Similarity=0.124 Sum_probs=161.1
Q ss_pred CCCCcEEEecCcccC--CCCCcCCcccceEEecCCCCCCCCCC-C-C--------CCCceEEEcCCCCcccccc-ccCCC
Q 001979 376 MKNLRLLKIRDVCLR--HGIEYLPDELRLLKWHGYPLRSLPSN-F-Q--------PERLFKLNICYSLVEQLWQ-GVQNM 442 (987)
Q Consensus 376 ~~~Lr~L~l~~~~l~--~~~~~l~~~Lr~L~~~~~~l~~lp~~-~-~--------~~~L~~L~l~~~~i~~l~~-~~~~l 442 (987)
+++|+.|++++|.+. .+.....+.++.+....+ .+|.. | . +.+|+.|+++. .++.+++ .|..|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 788999999998876 322222223444444444 56543 4 6 79999999998 8888865 68899
Q ss_pred CCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcC---Ccc-ccCccccCCCCc-EEeCcCCCCCccC----------
Q 001979 443 RHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTN---LSF-VHPSIGLLKRLK-VLNMKECIRIKSF---------- 506 (987)
Q Consensus 443 ~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~---l~~-~~~~i~~l~~L~-~L~L~~c~~l~~l---------- 506 (987)
++|+.|++++|.+....+. |.++.++..+.+..... ... -...+..+..|+ .+.+.....+...
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~ 203 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD 203 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence 9999999999887655554 88887787777655211 111 112233344444 3333221111000
Q ss_pred ------CchhhhhhHH-HhhhccccceeecCCcCCcccCcc-ccCCCCCCEEeccCCCCCcccCc-cCCCCCCCC-EEEe
Q 001979 507 ------PAEIEWASLE-IVQNAKRLLQLHLDQTSIEEIPPS-IKFLSRLTVLTLRDCKKLVSLPS-SISDLRSLK-VLNL 576 (987)
Q Consensus 507 ------p~~i~~~~l~-~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~-~L~l 576 (987)
...+...... ....+++|+.|++++|.++.+|.. +.++++|+.|++.++ +..++. .|.++++|+ .+.+
T Consensus 204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEE
T ss_pred cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEE
Confidence 0000000111 123488999999999999999875 889999999999986 555554 588999999 9999
Q ss_pred cCCCCCCcc-cccccCCCCCcEeeCCCCCCCCCCc-cccCCCCCcEEEc
Q 001979 577 NGCSKLEEV-PENLGHIASLENLDLGGTAIRRPPS-TIVLLENLKELSF 623 (987)
Q Consensus 577 ~~c~~l~~l-p~~l~~l~~L~~L~L~~~~i~~~p~-~i~~l~~L~~L~L 623 (987)
.+ .+..+ +..|.++++|+.+++.++.++.++. .+..+++|+.+..
T Consensus 282 ~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 282 PA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 87 45555 4678999999999999999998855 6788899998863
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=1.6e-10 Score=116.18 Aligned_cols=99 Identities=20% Similarity=0.275 Sum_probs=70.3
Q ss_pred ceEEecCCCCCCCCCCCCCCCceEEEcCCCCccccccccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCC
Q 001979 401 RLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQLWQGVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNL 479 (987)
Q Consensus 401 r~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l 479 (987)
+.+++.++.+..+|..+ +.+|++|++++|.++.+|..+..+++|++|+|++|.+....+. |.++++|++|+|++|...
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 45667777777777654 3578888888888888887788888888888888877666554 777777777777776554
Q ss_pred ccccCccccCCCCcEEeCcCC
Q 001979 480 SFVHPSIGLLKRLKVLNMKEC 500 (987)
Q Consensus 480 ~~~~~~i~~l~~L~~L~L~~c 500 (987)
...+..+..+++|++|+|++|
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSS
T ss_pred EeCHHHhCCCCCCCEEECCCC
Confidence 444445666666666666665
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.14 E-value=8.1e-11 Score=116.69 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=70.5
Q ss_pred ccceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCcc-CCCCCCCCEEEecCCCCCCcccc--cccCCCCCcEee
Q 001979 523 RLLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSS-ISDLRSLKVLNLNGCSKLEEVPE--NLGHIASLENLD 599 (987)
Q Consensus 523 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~ 599 (987)
+|+.|++++|.++.+ ..+..+++|++|++++|.... +|.. +..+++|+.|++++|.. ..+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEE
Confidence 556666666666655 456667777777777765443 3433 36677777777777654 55665 677788888888
Q ss_pred CCCCCCCCCCcc----ccCCCCCcEEEccCCC
Q 001979 600 LGGTAIRRPPST----IVLLENLKELSFHGCK 627 (987)
Q Consensus 600 L~~~~i~~~p~~----i~~l~~L~~L~L~~~~ 627 (987)
+++|.+...|.. +..+++|+.|++++|.
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 888888877764 7788888888888775
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=7.4e-10 Score=109.80 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=39.2
Q ss_pred cceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCC
Q 001979 524 LLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGT 603 (987)
Q Consensus 524 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~ 603 (987)
.+.++++++.++.+|..+ .++|+.|++++|...+..+..+..+++|++|++++|......+..+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 456666666666666433 245666666655443333333444555555555554332222222344444444444444
Q ss_pred CCC
Q 001979 604 AIR 606 (987)
Q Consensus 604 ~i~ 606 (987)
.++
T Consensus 87 ~l~ 89 (177)
T 2o6r_A 87 KLQ 89 (177)
T ss_dssp CCC
T ss_pred Ccc
Confidence 443
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.08 E-value=9.2e-10 Score=109.11 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=23.1
Q ss_pred CCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCC
Q 001979 444 HLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKEC 500 (987)
Q Consensus 444 ~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c 500 (987)
+|+.|++++|.+....+. +..+++|++|++++|......+..++.+++|++|++++|
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 444444444443332222 344444444444444322222222344444444444443
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=4e-10 Score=124.08 Aligned_cols=124 Identities=13% Similarity=0.088 Sum_probs=73.8
Q ss_pred CCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCc-cccCCCCCcEEEccCCCCCCCCcccccccCCCCCCC
Q 001979 568 LRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPS-TIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRAN 646 (987)
Q Consensus 568 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~-~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~ 646 (987)
..++..+.+.+.-....+......+++|+.|++++|.++.+|. .+..+++|+.|++.++- .
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni--~---------------- 262 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNL--K---------------- 262 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTC--C----------------
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCccc--c----------------
Confidence 4455666665532111111111236778888888877777754 46667777777776641 1
Q ss_pred CCCCccccCCCCCCCccc-EEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccch-hhhccCCCcEEe
Q 001979 647 RDSLGFFIPSLSGLHCLS-RLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPA-SINQLSRLETLN 715 (987)
Q Consensus 647 ~~~~~~~~~~l~~l~~L~-~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~ 715 (987)
......|.++++|+ .|++.+ .+.. .-+..+.++++|+.|++++|+++.++. .+.++++|+.++
T Consensus 263 ----~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 263 ----TIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ----EECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ----eehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 01124567777777 777776 4432 123457777777777777777777664 556677777664
No 148
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=1.2e-09 Score=119.98 Aligned_cols=186 Identities=18% Similarity=0.212 Sum_probs=115.8
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-CCcceEEEEehHhhhhccCHHHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ-FDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
...++++|++..++.+.+++..+. .+.+.|+|++|+||||+|+.+++.+... +....++++ .+...+...+ +
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~i-~ 90 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGIDVV-R 90 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSHHHH-H
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccChHHH-H
Confidence 344789999999999999997643 2338899999999999999999986432 221233333 1221222221 2
Q ss_pred HHHHHHhcCCCcccccchhhHHHHHHHh-cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCcccc-cc-c
Q 001979 86 QLVSEILLDKNVKIWDVHKGCHMIRIKL-RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDRHLL-VR-C 160 (987)
Q Consensus 86 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~~v~-~~-~ 160 (987)
+++..+.... ..+ .+++.+||+||++.. ...+.+...+.....++++|+||+...-. .. .
T Consensus 91 ~~~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~ 155 (323)
T 1sxj_B 91 NQIKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ 155 (323)
T ss_dssp THHHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH
Confidence 2222211000 001 346889999999763 33444444333335678888888765321 11 1
Q ss_pred CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchh-HHHHh
Q 001979 161 DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLA-LEILG 216 (987)
Q Consensus 161 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa-l~~l~ 216 (987)
.....+++++++.++..+++...+....... ..+..+.+++.++|.|.. +..+.
T Consensus 156 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 156 SQCAILRYSKLSDEDVLKRLLQIIKLEDVKY--TNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhceEEeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2345899999999999999988764332221 135678899999999954 44443
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.98 E-value=2.5e-08 Score=112.56 Aligned_cols=324 Identities=15% Similarity=0.191 Sum_probs=176.6
Q ss_pred eeChhhhcCCCCCcEEEecCcccCCCCCcCCcccceEEecCCCCCCCC-CCC-CCCCceEEEcCCCCccccc-cccCCCC
Q 001979 367 KLNPESFSRMKNLRLLKIRDVCLRHGIEYLPDELRLLKWHGYPLRSLP-SNF-QPERLFKLNICYSLVEQLW-QGVQNMR 443 (987)
Q Consensus 367 ~~~~~~f~~~~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~~~~~~l~~lp-~~~-~~~~L~~L~l~~~~i~~l~-~~~~~l~ 443 (987)
.+...+|.+|.+|+.+.+.+ . ++.++ ..| ++.+|+.++++.+ ++.+. ..+..+.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~------------~----------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~ 117 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS------------T----------VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCY 117 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT------------T----------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred EhHHHHhhCCCCceEEEeCC------------C----------ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccc
Confidence 46677888888888876642 1 12222 223 4567777777644 55553 3566677
Q ss_pred CCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccc
Q 001979 444 HLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKR 523 (987)
Q Consensus 444 ~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~ 523 (987)
+|+.+.+..+-.......|.++..++.....+...+ -...+..+++|+.+.+.++ +..++... +..+.+
T Consensus 118 ~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i--~~~aF~~c~~L~~i~l~~~--~~~I~~~~-------F~~c~~ 186 (394)
T 4fs7_A 118 ALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVI--GDEAFATCESLEYVSLPDS--METLHNGL-------FSGCGK 186 (394)
T ss_dssp TCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEE--CTTTTTTCTTCCEEECCTT--CCEECTTT-------TTTCTT
T ss_pred cchhhcccCceeeecceeeecccccccccCcccccc--chhhhcccCCCcEEecCCc--cceecccc-------ccCCCC
Confidence 777766654422222223555544443333332211 1234666777777777543 33444332 356667
Q ss_pred cceeecCCcCCcccCc-cccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcc-cccccCCCCCcEeeCC
Q 001979 524 LLQLHLDQTSIEEIPP-SIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEV-PENLGHIASLENLDLG 601 (987)
Q Consensus 524 L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~L~ 601 (987)
|+.+.+..+ ++.++. .+.++..|+.+.+..+. ..+........+|+.+.+... ...+ ...+..+.+|+.+.+.
T Consensus 187 L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~ 261 (394)
T 4fs7_A 187 LKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQ 261 (394)
T ss_dssp CCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEEC
T ss_pred ceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcC
Confidence 777777654 444433 35566666666655432 222223334456666666432 2222 2345556666666665
Q ss_pred CCCCCCCCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCC-cc
Q 001979 602 GTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAI-PN 680 (987)
Q Consensus 602 ~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~l-p~ 680 (987)
.+...-....+..+..++.+....... ....+..+.+|+.+.+..+ +. .+ ..
T Consensus 262 ~~~~~i~~~~F~~~~~l~~~~~~~~~i------------------------~~~~F~~~~~L~~i~l~~~-i~--~I~~~ 314 (394)
T 4fs7_A 262 NNKLRIGGSLFYNCSGLKKVIYGSVIV------------------------PEKTFYGCSSLTEVKLLDS-VK--FIGEE 314 (394)
T ss_dssp CTTCEECSCTTTTCTTCCEEEECSSEE------------------------CTTTTTTCTTCCEEEECTT-CC--EECTT
T ss_pred CCcceeeccccccccccceeccCceee------------------------ccccccccccccccccccc-cc--eechh
Confidence 543332233444555555555433210 1134667778888888654 22 13 23
Q ss_pred ccCCCCCCCEEeCCCCCCcccc-hhhhccCCCcEEecCCCcccccCCCCcccccccccccccccccccCCCcccCCCCce
Q 001979 681 DLGSLSALTNLTLSRNNFFSLP-ASINQLSRLETLNIDYCNRLKALPELPASIDGLFAHNCTSLIKLCSPSNITRLTPRM 759 (987)
Q Consensus 681 ~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~C~~L~~l~~~~~l~~~~~~~ 759 (987)
.+.++.+|+.++|..+ ++.++ ..+.++++|+.+.+..+ ++.++.- -+.+|++|+.+..+..+....
T Consensus 315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-------aF~~C~~L~~i~lp~~~~~~~--- 381 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGAN-------AFQGCINLKKVELPKRLEQYR--- 381 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTT-------TBTTCTTCCEEEEEGGGGGGG---
T ss_pred hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHH-------HhhCCCCCCEEEECCCCEEhh---
Confidence 5777888888888643 66665 35677788888877542 4444331 356888888877555544332
Q ss_pred EEeccccccc
Q 001979 760 FYLSNCFKLT 769 (987)
Q Consensus 760 l~~~~C~~L~ 769 (987)
..|.+|.+|.
T Consensus 382 ~~F~~c~~L~ 391 (394)
T 4fs7_A 382 YDFEDTTKFK 391 (394)
T ss_dssp GGBCTTCEEE
T ss_pred heecCCCCCc
Confidence 2478888774
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=9.8e-12 Score=125.99 Aligned_cols=118 Identities=16% Similarity=0.149 Sum_probs=69.7
Q ss_pred CccccccccCCCCCCCEEecCCCCCCCCCCCCCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCccCCchh
Q 001979 431 LVEQLWQGVQNMRHLKFIKLSHSVHLTKTPDFTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIKSFPAEI 510 (987)
Q Consensus 431 ~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~i 510 (987)
.++.+|..+..+++|++|+|++|.+.. +|.+.++++|++|++++|.. ..+|..+..+++|++|++++| .++.+| .
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~- 110 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYN-QIASLS-G- 110 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEE-ECCCHH-H-
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCC-cCCcCC-c-
Confidence 445555566667777777777766544 44666666677777766543 355555555666666666665 333333 1
Q ss_pred hhhhHHHhhhccccceeecCCcCCcccCc--cccCCCCCCEEeccCCCCCcc
Q 001979 511 EWASLEIVQNAKRLLQLHLDQTSIEEIPP--SIKFLSRLTVLTLRDCKKLVS 560 (987)
Q Consensus 511 ~~~~l~~~~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l~~ 560 (987)
+..+++|+.|++++|.++.+|. .+..+++|++|++++|...+.
T Consensus 111 -------~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 111 -------IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp -------HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred -------cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 2566666666666666665543 455566666666665544333
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=3.8e-12 Score=129.02 Aligned_cols=55 Identities=22% Similarity=0.341 Sum_probs=29.7
Q ss_pred CCCcccEEecCCCCCCCCCCc--cccCCCCCCCEEeCCCCCCcccch-----------hhhccCCCcEEe
Q 001979 659 GLHCLSRLDLGDCNLQEGAIP--NDLGSLSALTNLTLSRNNFFSLPA-----------SINQLSRLETLN 715 (987)
Q Consensus 659 ~l~~L~~L~Ls~~~l~~~~lp--~~l~~l~~L~~L~L~~n~l~~lp~-----------~i~~l~~L~~L~ 715 (987)
.+++|+.|++++|.+.. ++ ..+..+++|+.|++++|.+...+. .+..+++|+.|+
T Consensus 113 ~l~~L~~L~l~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITN--WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEECCC--HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCCcCCc--hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 34455555555555543 22 245566666666666666553321 145666666665
No 152
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=1e-08 Score=112.68 Aligned_cols=188 Identities=18% Similarity=0.149 Sum_probs=116.2
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC-CcceEEEEehHhhhhccCHHHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQF-DDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
...++++|++..++.+..++..+ ....+.|+|++|+||||+|+.+++.+.... ......+. .+...+...+ .
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~~-~ 94 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN----ASDERGINVI-R 94 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE----TTCHHHHHTT-H
T ss_pred CCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee----ccccCchHHH-H
Confidence 34577999999999999998764 333488999999999999999999864322 21122232 1110011111 1
Q ss_pred HHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCcccc-ccc-C
Q 001979 86 QLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDRHLL-VRC-D 161 (987)
Q Consensus 86 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~~v~-~~~-~ 161 (987)
+.+........ ...+++.+||+||++.. +..+.+...+.....++++|+||+...-. ... .
T Consensus 95 ~~~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 95 EKVKEFARTKP---------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp HHHHHHHHSCC---------------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHhhCC---------------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 11111000000 01256789999999764 44555555444445678899888765321 111 1
Q ss_pred cCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhh
Q 001979 162 VEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSF 218 (987)
Q Consensus 162 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~ 218 (987)
....+++++++.++..+++...+...... -..+..+.+++.++|.|..+..+...
T Consensus 160 r~~~~~~~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 160 RCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCcEEEecCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 23478999999999999998876433322 12356788999999999876554433
No 153
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.90 E-value=3.8e-08 Score=107.86 Aligned_cols=262 Identities=15% Similarity=0.081 Sum_probs=150.3
Q ss_pred CCCCCCccccchhHHHHHHHhcCC---CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHH
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTG---LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVA 82 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 82 (987)
|...+++||++..++++..++... ....+.|.|+|++|+|||++|+++++.....| .++. .........
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~----~~~~----~~~~~~~~~ 79 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL----RVTS----GPAIEKPGD 79 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE----EEEC----TTTCCSHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE----EEEe----ccccCChHH
Confidence 345678999999999998887531 12335788999999999999999999764322 2332 111111111
Q ss_pred HHHHHHHHHhcCCCcccccchhhHHHHHHHhc---CCceEEEEeCCCChH--HHHHHhcCCCCC----------------
Q 001979 83 LQEQLVSEILLDKNVKIWDVHKGCHMIRIKLR---HKRVLLVIDDVDEFD--QLQALAGQRDWF---------------- 141 (987)
Q Consensus 83 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~---~k~~LlVlDdv~~~~--~~~~l~~~~~~~---------------- 141 (987)
+...+. .++.+|+|||++... ..+.+...+...
T Consensus 80 --------------------------l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~ 133 (324)
T 1hqc_A 80 --------------------------LAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIR 133 (324)
T ss_dssp --------------------------HHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEE
T ss_pred --------------------------HHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccc
Confidence 111111 356799999997742 233332211110
Q ss_pred --CCCcEEEEEeCCccccc-cc--CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 142 --GLGSRIIITTRDRHLLV-RC--DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 142 --~~gs~IiiTtR~~~v~~-~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
.++.++|.||....... .+ .....+++++++.+|..+++...+....... ..+..+.+++++.|.|..+..+.
T Consensus 134 ~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l~~~l 211 (324)
T 1hqc_A 134 LELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI--TEEAALEIGRRSRGTMRVAKRLF 211 (324)
T ss_dssp EECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHSCSCHHHHHHHH
T ss_pred cCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHccCCHHHHHHHH
Confidence 12456777776543221 11 2235899999999999999988774433221 23667889999999998877665
Q ss_pred hhhcC---------CCHHHHHHHHHhhhcCCCchHHHHHHHhHhCccHHHHHHHhheeeccCC--CCHHHHHHHHHhCCC
Q 001979 217 SFLFA---------RSKAEWKDALDRLKYVPDQKIFEILKISYDGLQETEKKIFLDIACFFKG--KDKDQVRELLDSCDF 285 (987)
Q Consensus 217 ~~L~~---------~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~--~~~~~l~~~~~~~~~ 285 (987)
..+.. -+.+....++..+ ...+..+++.++..+..++....+ .....+.+.++-...
T Consensus 212 ~~~~~~a~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~ 279 (324)
T 1hqc_A 212 RRVRDFAQVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPG 279 (324)
T ss_dssp HHHTTTSTTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHH
Confidence 44321 1233333333322 223456777777777766644333 345555554432111
Q ss_pred Cccccch-hhhcccceEEeCCeEEecHHHHH
Q 001979 286 YPEIGIS-VLIDKCIITLSNNILCMHDLIQD 315 (987)
Q Consensus 286 ~~~~~~~-~L~~~~Li~~~~~~~~mHdll~~ 315 (987)
.....++ .+++.++|........+-+...+
T Consensus 280 tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~ 310 (324)
T 1hqc_A 280 TLEEVHEPYLIRQGLLKRTPRGRVPTELAYR 310 (324)
T ss_dssp HHHHHTHHHHHHTTSEEEETTEEEECHHHHH
T ss_pred HHHHHHhHHHHHhcchhcCCccceecHHHHH
Confidence 1111122 37778888876544455554433
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.89 E-value=8.4e-09 Score=101.26 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=67.5
Q ss_pred cceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCC
Q 001979 524 LLQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGT 603 (987)
Q Consensus 524 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~ 603 (987)
.+.++++++.++.+|..+ .++|++|+|++|...+..|..|..+++|++|++++|......+..+..+++|+.|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456666666666666654 266777777776666555666677777777777776544333344567777777777777
Q ss_pred CCCCCCc-cccCCCCCcEEEccCCC
Q 001979 604 AIRRPPS-TIVLLENLKELSFHGCK 627 (987)
Q Consensus 604 ~i~~~p~-~i~~l~~L~~L~L~~~~ 627 (987)
.++.+|. .+..+++|+.|+|++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 7777655 36677777777777765
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.88 E-value=9.6e-09 Score=101.21 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=54.9
Q ss_pred ceeecCCcCCcccCccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccc-cccCCCCCcEeeCCCC
Q 001979 525 LQLHLDQTSIEEIPPSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPE-NLGHIASLENLDLGGT 603 (987)
Q Consensus 525 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~L~~~ 603 (987)
+.++++++.++.+|..+. ++|++|+|++|...+..|..|..+++|+.|++++|... .+|. .+..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCCC
Confidence 344555555555554442 55555555555554444555555666666666665433 3332 3455666666666666
Q ss_pred CCCCCCcc-ccCCCCCcEEEccCCC
Q 001979 604 AIRRPPST-IVLLENLKELSFHGCK 627 (987)
Q Consensus 604 ~i~~~p~~-i~~l~~L~~L~L~~~~ 627 (987)
.++.+|.. +..+++|+.|++++|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 66665543 5556666666666654
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=1.3e-07 Score=106.20 Aligned_cols=60 Identities=5% Similarity=0.069 Sum_probs=32.9
Q ss_pred CCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccch-hhhccC-CCcEEecCC
Q 001979 656 SLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPA-SINQLS-RLETLNIDY 718 (987)
Q Consensus 656 ~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~-~L~~L~L~~ 718 (987)
.|.++++|+.+.|..+ +.. .-...+.++ +|+.|.+.+|.+..++. .+.+++ +++.|.+..
T Consensus 318 aF~~c~~L~~l~lp~~-l~~-I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPAN-VTQ-INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TTTTCCSCCEEEECTT-CCE-ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred hhcCCCCccEEEECcc-ccE-EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 4566666666666544 221 112345566 67777777776665543 334443 566666654
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.83 E-value=1.9e-07 Score=105.02 Aligned_cols=238 Identities=8% Similarity=0.132 Sum_probs=128.9
Q ss_pred eeeChhhhcCCCCCcEEEecCcc--cCCCCCcCCcccceEEecCCCCCCCCC-CC-CCCCceEEEcCCCCccccccccCC
Q 001979 366 VKLNPESFSRMKNLRLLKIRDVC--LRHGIEYLPDELRLLKWHGYPLRSLPS-NF-QPERLFKLNICYSLVEQLWQGVQN 441 (987)
Q Consensus 366 ~~~~~~~f~~~~~Lr~L~l~~~~--l~~~~~~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~~~~~~ 441 (987)
..+...+|.++ +|+.+.+.++- +......- ..|+.+.+.. .++.++. .| .+.+|+.++++.|.++.++.+.-.
T Consensus 125 ~~I~~~aF~~~-~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~ 201 (401)
T 4fdw_A 125 KSIPKDAFRNS-QIAKVVLNEGLKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV 201 (401)
T ss_dssp CEECTTTTTTC-CCSEEECCTTCCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT
T ss_pred CEehHhhcccC-CccEEEeCCCccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe
Confidence 34566777765 67777765431 11111111 2455665554 4555543 34 566677777777777766654444
Q ss_pred CCCCCEEecCCCCCCCCCC--CCCCCCcccEEeccCCcCCccccCc-cccCCCCcEEeCcCCCCCccCCchhhhhhHHHh
Q 001979 442 MRHLKFIKLSHSVHLTKTP--DFTGVPKLERLVLDGCTNLSFVHPS-IGLLKRLKVLNMKECIRIKSFPAEIEWASLEIV 518 (987)
Q Consensus 442 l~~L~~L~Ls~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~ 518 (987)
+.+|+.+.|..+ ...++ .|.++++|+.+++..+ +..++.. +.. .+|+.+.+.. .++.++... +
T Consensus 202 ~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~a-------F 267 (401)
T 4fdw_A 202 YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIASRA-------F 267 (401)
T ss_dssp TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEECTTT-------T
T ss_pred ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC--CccEEChhH-------h
Confidence 567777777644 22222 2666777777777652 3444333 333 5666666643 344444332 3
Q ss_pred hhccccceeecCCcCCc-----ccC-ccccCCCCCCEEeccCCCCCcccC-ccCCCCCCCCEEEecCCCCCCcc-ccccc
Q 001979 519 QNAKRLLQLHLDQTSIE-----EIP-PSIKFLSRLTVLTLRDCKKLVSLP-SSISDLRSLKVLNLNGCSKLEEV-PENLG 590 (987)
Q Consensus 519 ~~l~~L~~L~L~~~~i~-----~lp-~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l-p~~l~ 590 (987)
..+++|+.+.+.++.+. .++ ..+..|++|+.+.+.++ +..++ ..|.++++|+.+.+..+ +..+ +..|.
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~ 343 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFN 343 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSS
T ss_pred hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCC
Confidence 56667777776665554 343 24666677777776632 33333 33566667777776442 3333 23456
Q ss_pred CCCCCcEeeCCCCCCCCCCc-cccCC-CCCcEEEccC
Q 001979 591 HIASLENLDLGGTAIRRPPS-TIVLL-ENLKELSFHG 625 (987)
Q Consensus 591 ~l~~L~~L~L~~~~i~~~p~-~i~~l-~~L~~L~L~~ 625 (987)
++ +|+.+++.+|....++. .+..+ .+++.|.+..
T Consensus 344 ~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 344 NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 66 67777776666555432 33334 2555666544
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.83 E-value=1.9e-08 Score=98.72 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=73.1
Q ss_pred cceEEecCCCCCCCCCCCCCCCceEEEcCCCCcccc-ccccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCc
Q 001979 400 LRLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQL-WQGVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCT 477 (987)
Q Consensus 400 Lr~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~ 477 (987)
.+.++++++.+..+|..+ +.+|++|++++|.++.+ +..+..+++|++|+|++|++....+. |.++++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 356677777777777665 47788888888888877 45677888888888888877766655 6778888888888865
Q ss_pred CCccccCccccCCCCcEEeCcCCC
Q 001979 478 NLSFVHPSIGLLKRLKVLNMKECI 501 (987)
Q Consensus 478 ~l~~~~~~i~~l~~L~~L~L~~c~ 501 (987)
.....+..+..+++|++|+|++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 444333457777888888888763
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.80 E-value=2.6e-08 Score=98.11 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=68.7
Q ss_pred ceEEecCCCCCCCCCCCCCCCceEEEcCCCCcccc-ccccCCCCCCCEEecCCCCCCCCCCC-CCCCCcccEEeccCCcC
Q 001979 401 RLLKWHGYPLRSLPSNFQPERLFKLNICYSLVEQL-WQGVQNMRHLKFIKLSHSVHLTKTPD-FTGVPKLERLVLDGCTN 478 (987)
Q Consensus 401 r~L~~~~~~l~~lp~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L~~~~~ 478 (987)
+.+++.++.+..+|..+. .+|++|++++|.++.+ +..+..+++|++|+|++|.+....+. |.++++|++|+|++|..
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 456677777777776553 6777778877777776 45677778888888888776665554 57777777777777654
Q ss_pred CccccC-ccccCCCCcEEeCcCC
Q 001979 479 LSFVHP-SIGLLKRLKVLNMKEC 500 (987)
Q Consensus 479 l~~~~~-~i~~l~~L~~L~L~~c 500 (987)
. .+|. .+..+++|++|+|++|
T Consensus 94 ~-~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 94 K-SIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp C-CCCTTTTTTCTTCSEEECCSS
T ss_pred c-eeCHHHhccccCCCEEEeCCC
Confidence 4 3443 4777777777777776
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.76 E-value=3e-07 Score=103.72 Aligned_cols=302 Identities=14% Similarity=0.159 Sum_probs=167.7
Q ss_pred CCCCCCC-CC-CCCCceEEEcCCCCcccccc-ccCCCCCCCEEecCCCCCCCCCC--CCCCCCcccEEeccCCcCCcccc
Q 001979 409 PLRSLPS-NF-QPERLFKLNICYSLVEQLWQ-GVQNMRHLKFIKLSHSVHLTKTP--DFTGVPKLERLVLDGCTNLSFVH 483 (987)
Q Consensus 409 ~l~~lp~-~~-~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~~~ 483 (987)
.+.++.. .| ++.+|+.+.++. .++.+.+ +|.++.+|+.++|..+ ...++ .|.++.+|+.+.+..+ +..+.
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~--l~~i~ 132 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM--LKSIG 132 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT--CCEEC
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc--eeeec
Confidence 3444543 34 667888888874 3666643 6778888888888765 22333 3777777777666542 22222
Q ss_pred -CccccCCCCcEEeCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccCc-cccCCCCCCEEeccCCCCCccc
Q 001979 484 -PSIGLLKRLKVLNMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIPP-SIKFLSRLTVLTLRDCKKLVSL 561 (987)
Q Consensus 484 -~~i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l 561 (987)
..+..+..+........ ..+.. ..+..+++|+.+.+..+. ..++. .+.++.+|+.+.+..+ ...+
T Consensus 133 ~~aF~~~~~~~~~~~~~~---~~i~~-------~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I 199 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPEGV---TVIGD-------EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKII 199 (394)
T ss_dssp TTTTTTCCCSEEECCTTC---CEECT-------TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEE
T ss_pred ceeeecccccccccCccc---cccch-------hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEe
Confidence 23444433333322221 11111 123566677777775442 33333 3556666776666543 2222
Q ss_pred C-ccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCC-CccccCCCCCcEEEccCCCCCCCCccccccc
Q 001979 562 P-SSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRP-PSTIVLLENLKELSFHGCKGQRKSWSSLIWL 639 (987)
Q Consensus 562 p-~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~ 639 (987)
+ ..+.++..|+.+.+..+ ...+.+......+|+.+.+..+. ..+ ...+..+.+|+.+.+..+..
T Consensus 200 ~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~----------- 265 (394)
T 4fs7_A 200 RDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL----------- 265 (394)
T ss_dssp CTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-----------
T ss_pred CchhhccccccceeecCCC--ceEeehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc-----------
Confidence 2 23555666666555432 22222333334556666554322 111 22344556666666544321
Q ss_pred CCCCCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccch-hhhccCCCcEEecCC
Q 001979 640 PFYPRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPA-SINQLSRLETLNIDY 718 (987)
Q Consensus 640 ~~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~ 718 (987)
......+..+..++.+.+....+. ...+..+.+|+.+.+..+ ++.++. .+.++++|+.++|..
T Consensus 266 -----------~i~~~~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~ 329 (394)
T 4fs7_A 266 -----------RIGGSLFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY 329 (394)
T ss_dssp -----------EECSCTTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred -----------eeeccccccccccceeccCceeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC
Confidence 112245667778888877665432 234677889999998764 666654 567888999988853
Q ss_pred CcccccCCCCcccccccccccccccccccCCCcccCCCCceEEeccccccc
Q 001979 719 CNRLKALPELPASIDGLFAHNCTSLIKLCSPSNITRLTPRMFYLSNCFKLT 769 (987)
Q Consensus 719 c~~L~~lp~lp~sL~~L~~~~C~~L~~l~~~~~l~~~~~~~l~~~~C~~L~ 769 (987)
.++.++. --+.+|.+|+.+..+.++..+... .|.+|.+|+
T Consensus 330 --~v~~I~~-------~aF~~c~~L~~i~lp~~l~~I~~~--aF~~C~~L~ 369 (394)
T 4fs7_A 330 --LVEEIGK-------RSFRGCTSLSNINFPLSLRKIGAN--AFQGCINLK 369 (394)
T ss_dssp --TCCEECT-------TTTTTCTTCCEECCCTTCCEECTT--TBTTCTTCC
T ss_pred --cccEEhH-------HhccCCCCCCEEEECccccEehHH--HhhCCCCCC
Confidence 2444433 245689999998876665544322 478998884
No 161
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.72 E-value=3e-08 Score=111.11 Aligned_cols=196 Identities=14% Similarity=0.093 Sum_probs=115.8
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQ 86 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (987)
...+++||++..++.+...+..+. ..+.+.|+|++|+||||+|+.+++.+..... .. ... .+.......
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~-~~-~~~--------~~~~~~~~~ 81 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETG-IT-ATP--------CGVCDNCRE 81 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTC-SC-SSC--------CSSSHHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCC-CC-CCC--------CcccHHHHH
Confidence 345679999999999999986532 2357889999999999999999997643221 00 000 000000001
Q ss_pred HHHHHhcCCCc---c--cccchhhHHHHHHHh-----cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc
Q 001979 87 LVSEILLDKNV---K--IWDVHKGCHMIRIKL-----RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDR 154 (987)
Q Consensus 87 ll~~l~~~~~~---~--~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~ 154 (987)
+... ...+. . .....+....+.+.+ .+++.+||+||++.. ...+.+...+.....+..+|++|.+.
T Consensus 82 ~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 82 IEQG--RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp HHTS--CCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred Hhcc--CCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 1100 00000 0 000011122333333 246789999999763 44555555444345567778777654
Q ss_pred cc-ccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhh
Q 001979 155 HL-LVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGS 217 (987)
Q Consensus 155 ~v-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~ 217 (987)
.- ... ......+++.+++.++..+++...+-...... ..+....+++.++|.|..+..+..
T Consensus 160 ~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~--~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 160 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 32 111 12346899999999999999987763322221 135678899999999988776543
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.71 E-value=1e-07 Score=104.08 Aligned_cols=180 Identities=14% Similarity=0.099 Sum_probs=115.4
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhh-cCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNIS-YQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
...++++|++..++.+.+++..+ ....+.|+|++|+||||+|+.+++.+. ..+....+.++ .+...+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~---- 83 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN----ASDERGID---- 83 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE----TTSTTCTT----
T ss_pred CCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe----CccccChH----
Confidence 33467999999999999988753 233488999999999999999999863 22221223333 11111100
Q ss_pred HHHHHHhcCCCcccccchhhHHHHHHH-----h-cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCcc-c
Q 001979 86 QLVSEILLDKNVKIWDVHKGCHMIRIK-----L-RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDRH-L 156 (987)
Q Consensus 86 ~ll~~l~~~~~~~~~~~~~~~~~l~~~-----L-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~~-v 156 (987)
.....+... + .+++.+||+||++.. +..+.+...+.....+.++|+||.... +
T Consensus 84 ------------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l 145 (319)
T 2chq_A 84 ------------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRI 145 (319)
T ss_dssp ------------------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGS
T ss_pred ------------------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhc
Confidence 000111111 1 256789999999764 445666666655566788888887653 2
Q ss_pred ccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 157 LVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 157 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
... ......+++.+++.++..+++...+...... -..+..+.+++.++|.+..+....
T Consensus 146 ~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 146 IEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp CHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred chHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 111 1233589999999999999998776433322 123567888899999998655443
No 163
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.4e-07 Score=100.99 Aligned_cols=168 Identities=14% Similarity=0.065 Sum_probs=99.9
Q ss_pred CccccchhHHHHHHHhcC--CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC------CcceEEEEehHhhhhccCHHH
Q 001979 11 KLVGMDYRLEQIYLMLGT--GLDEARILGICGMGGIGKTTLARFVFDNISYQF------DDGSSFLANVREVSQTRGLVA 82 (987)
Q Consensus 11 ~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~ 82 (987)
.+.||+++++++...|.. ..+....+.|+|++|+|||++|+.+++++.... ....++++ .....+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHHH
Confidence 488999999999887754 234557889999999999999999999875432 11245555 233344456
Q ss_pred HHHHHHHHHhcCCCcccccchhhHHHHHHHh---cCCceEEEEeCCCChH---HHHHHhcCCCCCCCCc--EEEEEeCCc
Q 001979 83 LQEQLVSEILLDKNVKIWDVHKGCHMIRIKL---RHKRVLLVIDDVDEFD---QLQALAGQRDWFGLGS--RIIITTRDR 154 (987)
Q Consensus 83 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L---~~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs--~IiiTtR~~ 154 (987)
+...+..++.+.. .......+....+.+.+ .+++++||||+++... .+..+.... . ..++ .||.++.+.
T Consensus 97 ~~~~I~~~L~g~~-~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~-~-~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 97 LYEKIWFAISKEN-LCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWI-S-SKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHH-H-CSSCCEEEEEECCSS
T ss_pred HHHHHHHHhcCCC-CCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcc-c-ccCCcEEEEEEecCc
Confidence 6777777764332 11111122222333332 4577999999998753 233332210 0 1223 334444443
Q ss_pred ccccc-c------Cc-CceEEcCCCCHHHHHHHHHHhhc
Q 001979 155 HLLVR-C------DV-EDTYMVEKLNYNEALHLFSWKAF 185 (987)
Q Consensus 155 ~v~~~-~------~~-~~~~~l~~L~~~ea~~Lf~~~a~ 185 (987)
..... + .. ...+.+++++.+|-.+++..++-
T Consensus 174 d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 174 VTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 22111 1 11 24789999999999999988863
No 164
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.66 E-value=5.2e-07 Score=99.43 Aligned_cols=248 Identities=14% Similarity=0.089 Sum_probs=139.8
Q ss_pred CCCCccccchhHHHHHHHhcCC---CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHH
Q 001979 8 ASEKLVGMDYRLEQIYLMLGTG---LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQ 84 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 84 (987)
..++++|++..++++..++... ......|.|+|++|+|||++|++++++....|- .+. ........
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~----~~~----~~~~~~~~--- 95 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIK----TTA----APMIEKSG--- 95 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE----EEE----GGGCCSHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE----Eec----chhccchh---
Confidence 4578999999999999888642 233456889999999999999999887543332 222 11111111
Q ss_pred HHHHHHHhcCCCcccccchhhHHHHHHHh--cCCceEEEEeCCCCh--HHHHHHhcCCCCC------------------C
Q 001979 85 EQLVSEILLDKNVKIWDVHKGCHMIRIKL--RHKRVLLVIDDVDEF--DQLQALAGQRDWF------------------G 142 (987)
Q Consensus 85 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~~--~~~~~l~~~~~~~------------------~ 142 (987)
.+...+ ..+..+|+||+++.. .....+...+... .
T Consensus 96 -----------------------~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 96 -----------------------DLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp -----------------------HHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred -----------------------HHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 111111 245678999999763 2222332211110 1
Q ss_pred CCcEEEEEeCCccccc-c--cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhhh
Q 001979 143 LGSRIIITTRDRHLLV-R--CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSFL 219 (987)
Q Consensus 143 ~gs~IiiTtR~~~v~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L 219 (987)
++.++|.||....... . -..+..+++++++.++..+++...+...... -..+..+.+++.+.|.|-.+..+...+
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~ 230 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT--CEEKAALEIAKRSRSTPRIALRLLKRV 230 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE--ECHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 2356676666543221 1 1234689999999999999998776433221 123567788889999996555443322
Q ss_pred ------cCC---CHHHHHHHHHhhhcCCCchHHHHHHHhHhCccHHHHHHHhheeeccCC--CCHHHHHHHHHhCCCCcc
Q 001979 220 ------FAR---SKAEWKDALDRLKYVPDQKIFEILKISYDGLQETEKKIFLDIACFFKG--KDKDQVRELLDSCDFYPE 288 (987)
Q Consensus 220 ------~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~--~~~~~l~~~~~~~~~~~~ 288 (987)
.+. +.+....++.. +..+...++..+++.+..++-. .+ .....+.+.+.-..-...
T Consensus 231 ~~~a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~ 297 (338)
T 3pfi_A 231 RDFADVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIE 297 (338)
T ss_dssp HHHHHHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHH
Confidence 111 22333333322 2223345566556666555544 32 235555554432211122
Q ss_pred ccch-hhhcccceEEeC
Q 001979 289 IGIS-VLIDKCIITLSN 304 (987)
Q Consensus 289 ~~~~-~L~~~~Li~~~~ 304 (987)
..++ .|++.++|....
T Consensus 298 ~~l~~~l~~~gli~~~~ 314 (338)
T 3pfi_A 298 DVIEPYLLANGYIERTA 314 (338)
T ss_dssp HTTHHHHHHTTSEEEET
T ss_pred HHHhHHHHHcCceecCC
Confidence 2344 788889988773
No 165
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.64 E-value=1.2e-06 Score=97.22 Aligned_cols=196 Identities=13% Similarity=0.086 Sum_probs=113.5
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhc--CCCcceEEEEehHhhhhccCHHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISY--QFDDGSSFLANVREVSQTRGLVALQ 84 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~ 84 (987)
...+.++|++..++.+..++..+. ...+.|+|++|+||||+|+.+++.+.. .+......+. .+...+...+.
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~----~~~~~~~~~~~ 107 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN----ASDERGISIVR 107 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC----SSSCCCHHHHT
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc----cccccchHHHH
Confidence 345789999999999999987642 223889999999999999999987642 1221222332 11112222221
Q ss_pred HHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCcc-cccc-c
Q 001979 85 EQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDRH-LLVR-C 160 (987)
Q Consensus 85 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~~-v~~~-~ 160 (987)
+.+........... . .. .....-..++-+|++|+++.. ...+.+...+.......++|++|.... +... .
T Consensus 108 -~~~~~~~~~~~~~~--~-~~--~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 108 -EKVKNFARLTVSKP--S-KH--DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp -THHHHHHHSCCCCC--C-TT--HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -HHHHHHhhhccccc--c-hh--hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 21222111100000 0 00 000111235579999998763 333444443333345677888776543 2111 1
Q ss_pred CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 161 DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 161 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
.....+++.+++.++..+.+...+......-+ .+..+.|+++++|.|..+..+.
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLRFISEQENVKCD--DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHTSSCHHHHHHHH
T ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 22347899999999999999887643332211 3678899999999998755443
No 166
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.64 E-value=3.1e-07 Score=106.95 Aligned_cols=191 Identities=18% Similarity=0.158 Sum_probs=107.9
Q ss_pred CCCCCccccchhHHHHHHHhcCC---------------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEeh
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTG---------------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANV 71 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~---------------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~ 71 (987)
...++++|++..++++.+++... .+..+.+.|+|++|+||||+|+++++... +. .+.++
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~--~i~in-- 109 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD--ILEQN-- 109 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE--EEEEC--
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC--EEEEe--
Confidence 34578999999999999998641 01347899999999999999999999862 22 33333
Q ss_pred HhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHH--hcCCceEEEEeCCCChH-----HHHHHhcCCCCCCCC
Q 001979 72 REVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIK--LRHKRVLLVIDDVDEFD-----QLQALAGQRDWFGLG 144 (987)
Q Consensus 72 ~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~--L~~k~~LlVlDdv~~~~-----~~~~l~~~~~~~~~g 144 (987)
.+..... .+....+........ .........+. ..+++.+||||+++... .+..+..... ..+
T Consensus 110 --~s~~~~~-~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~ 179 (516)
T 1sxj_A 110 --ASDVRSK-TLLNAGVKNALDNMS-----VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTS 179 (516)
T ss_dssp --TTSCCCH-HHHHHTGGGGTTBCC-----STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCS
T ss_pred --CCCcchH-HHHHHHHHHHhcccc-----HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcC
Confidence 2222221 122222221111110 00000000001 23577899999996531 1233322211 124
Q ss_pred cEEEEEeCCcc---cccccCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchh-HHHH
Q 001979 145 SRIIITTRDRH---LLVRCDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLA-LEIL 215 (987)
Q Consensus 145 s~IiiTtR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa-l~~l 215 (987)
..||+++.+.. +.........+++++++.++..+++...+.......+ .+....|++.++|.+-. +..+
T Consensus 180 ~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 180 TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp SCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHHHHH
T ss_pred CCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 45666665432 2222234467999999999999999877654332211 23577889999995544 4444
No 167
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.61 E-value=2e-07 Score=99.96 Aligned_cols=183 Identities=15% Similarity=0.173 Sum_probs=105.4
Q ss_pred CCCCCCccccchhHHHHHHHhcCC-----------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhh
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTG-----------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREV 74 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 74 (987)
....++++|++..++++.+.+... ....+.+.|+|++|+|||++|+++++.....| +.+. ..+.
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~-~~~~ 87 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVV-GSEL 87 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEE-GGGG
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEe-hHHH
Confidence 344578999999999998877421 12345688999999999999999998764322 1222 1111
Q ss_pred hhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh----------------HHHHHHhcCC
Q 001979 75 SQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF----------------DQLQALAGQR 138 (987)
Q Consensus 75 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~ 138 (987)
.... .... .......+......++.+|+|||++.. ..+..+....
T Consensus 88 ~~~~-~~~~------------------~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 148 (285)
T 3h4m_A 88 VKKF-IGEG------------------ASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM 148 (285)
T ss_dssp CCCS-TTHH------------------HHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH
T ss_pred HHhc-cchH------------------HHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh
Confidence 1000 0000 001111222223456689999999653 1233332221
Q ss_pred C--CCCCCcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCC-Cch
Q 001979 139 D--WFGLGSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADG-LPL 210 (987)
Q Consensus 139 ~--~~~~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-~PL 210 (987)
. ....+..||.||........ ......+.++..+.++..+++...+.......+ .....+++.+.| .|-
T Consensus 149 ~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~ 225 (285)
T 3h4m_A 149 DGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGA 225 (285)
T ss_dssp HTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHH
T ss_pred hCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHH
Confidence 1 12345677788876543331 123357899999999999999888754332211 114566777776 443
Q ss_pred hHHHH
Q 001979 211 ALEIL 215 (987)
Q Consensus 211 al~~l 215 (987)
.+..+
T Consensus 226 ~i~~l 230 (285)
T 3h4m_A 226 ELKAI 230 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 168
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.59 E-value=1.7e-07 Score=97.80 Aligned_cols=174 Identities=13% Similarity=0.030 Sum_probs=102.3
Q ss_pred CCCCccccc---hhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHH
Q 001979 8 ASEKLVGMD---YRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQ 84 (987)
Q Consensus 8 ~~~~~vGr~---~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 84 (987)
..++++|.+ ..++.+..+.... ..+.+.|+|++|+||||+|+++++....... .+.|+.. .+.... +
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~-~~~~~~~-~~~~~~--~---- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELER-RSFYIPL-GIHASI--S---- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEG-GGGGGS--C----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEEH-HHHHHH--H----
Confidence 446788743 5566666666542 4467889999999999999999998765533 4566652 111100 0
Q ss_pred HHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH--H--HHHHhcCCCCC-CCC-cEEEEEeCCccc-c
Q 001979 85 EQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD--Q--LQALAGQRDWF-GLG-SRIIITTRDRHL-L 157 (987)
Q Consensus 85 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~--~~~l~~~~~~~-~~g-s~IiiTtR~~~v-~ 157 (987)
.. .. +.+ .++.+||+||++... . .+.+...+... ..+ .++|+||+...- .
T Consensus 96 ----~~--------------~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 96 ----TA--------------LL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp ----GG--------------GG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred ----HH--------------HH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 00 00 001 345689999996532 1 22222221110 122 258888774321 1
Q ss_pred ----cc----cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 158 ----VR----CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 158 ----~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
.. +.....+++++++.++..+++...+....... ..+..+.+++.++|.+-.+..+.
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL--PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC--CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHccCCHHHHHHHH
Confidence 11 11226899999999999999988764332221 23567788999999887665443
No 169
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.56 E-value=1.5e-07 Score=94.28 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=42.9
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
...+.++||+..++++.+.+..+ ..+.+.|+|++|+|||++|+.+++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44578999999999999998753 3456789999999999999999997643
No 170
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.54 E-value=2.1e-07 Score=102.96 Aligned_cols=102 Identities=17% Similarity=0.130 Sum_probs=74.9
Q ss_pred eeecCCc-CCcccCccccCCCCCCEEeccC-CCCCcccCccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCC
Q 001979 526 QLHLDQT-SIEEIPPSIKFLSRLTVLTLRD-CKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGT 603 (987)
Q Consensus 526 ~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~ 603 (987)
.++++++ .++.+|. +..+++|+.|+|++ |...+..+..|..+++|+.|+|++|......|..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 7777777 77888888888886 5444444456788888888888888665556667788888888888888
Q ss_pred CCCCCCccccCCCCCcEEEccCCCC
Q 001979 604 AIRRPPSTIVLLENLKELSFHGCKG 628 (987)
Q Consensus 604 ~i~~~p~~i~~l~~L~~L~L~~~~~ 628 (987)
.++.+|..+.....|+.|+|.+|..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCc
Confidence 8888876554444488888888764
No 171
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.52 E-value=1.1e-06 Score=95.72 Aligned_cols=183 Identities=15% Similarity=0.107 Sum_probs=105.5
Q ss_pred CCCCCccccchhHHHHHHHhc----------CCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhh
Q 001979 7 SASEKLVGMDYRLEQIYLMLG----------TGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQ 76 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 76 (987)
..-++++|.+..+++|.+.+. ......+-|.|+|++|+|||++|+++++.....| +.+. ..+.
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~-~~~l-- 87 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVS-SSDL-- 87 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEE-HHHH--
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEc-hHHH--
Confidence 345789999999999998772 1112346788999999999999999999864322 2222 1111
Q ss_pred ccCHHHHHHHHHHHHhcCCCcccccchhhHH-HHHHHhcCCceEEEEeCCCChH-------------HHHHHhcCC---C
Q 001979 77 TRGLVALQEQLVSEILLDKNVKIWDVHKGCH-MIRIKLRHKRVLLVIDDVDEFD-------------QLQALAGQR---D 139 (987)
Q Consensus 77 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~-~l~~~L~~k~~LlVlDdv~~~~-------------~~~~l~~~~---~ 139 (987)
...... ....... .+...-..++.+|+||+++... ....+...+ .
T Consensus 88 -----------~~~~~g-------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 149 (322)
T 3eie_A 88 -----------VSKWMG-------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 149 (322)
T ss_dssp -----------HTTTGG-------GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG
T ss_pred -----------hhcccc-------hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc
Confidence 100000 0111111 1222223567899999997531 122232222 1
Q ss_pred CCCCCcEEEEEeCCcccccc---cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCC-chhHHHH
Q 001979 140 WFGLGSRIIITTRDRHLLVR---CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGL-PLALEIL 215 (987)
Q Consensus 140 ~~~~gs~IiiTtR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~l 215 (987)
....+..||.||.....+.. -.....+.++..+.++..+++..++........ ......+++.+.|. +-.|..+
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 150 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp TSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCHHHHHHH
T ss_pred ccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 22345666667776533221 123467889999999999999988744322211 24567788888774 4344444
Q ss_pred h
Q 001979 216 G 216 (987)
Q Consensus 216 ~ 216 (987)
.
T Consensus 228 ~ 228 (322)
T 3eie_A 228 V 228 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 172
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.51 E-value=1.3e-08 Score=113.30 Aligned_cols=85 Identities=14% Similarity=0.052 Sum_probs=44.7
Q ss_pred CCCCCEEeccCCCCCc----ccCccCCCCCCCCEEEecCCCCCC----cccccccCCCCCcEeeCCCCCCCC-----CCc
Q 001979 544 LSRLTVLTLRDCKKLV----SLPSSISDLRSLKVLNLNGCSKLE----EVPENLGHIASLENLDLGGTAIRR-----PPS 610 (987)
Q Consensus 544 l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~L~~~~i~~-----~p~ 610 (987)
.++|++|+|++|.... .++..+..+++|++|+|++|.... .+++.+...++|+.|+|++|.++. ++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 3445555555554321 122333445556666666554322 134445555666777777666653 233
Q ss_pred cccCCCCCcEEEccCCCC
Q 001979 611 TIVLLENLKELSFHGCKG 628 (987)
Q Consensus 611 ~i~~l~~L~~L~L~~~~~ 628 (987)
.+...++|++|+|++|..
T Consensus 234 ~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 234 AAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHCSSCCEEECTTSSC
T ss_pred HHHhCCCCCEEeccCCCC
Confidence 344566777777777753
No 173
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.51 E-value=1.1e-06 Score=97.93 Aligned_cols=203 Identities=14% Similarity=0.012 Sum_probs=107.8
Q ss_pred CCCccccchhHHHH---HHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHH
Q 001979 9 SEKLVGMDYRLEQI---YLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQE 85 (987)
Q Consensus 9 ~~~~vGr~~~~~~l---~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 85 (987)
.+.+||++..++.+ .+.+..+....+.+.|+|++|+|||++|+++++.+..... .+.+....-.+..........
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP--FTAIAGSEIFSLEMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC--EEEEEGGGGSCSSSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC--cccccchhhhhcccchhHHHH
Confidence 56899999987774 4444443333468899999999999999999998764333 122221111111122222222
Q ss_pred HHHHHHhcC--------------------CC-----cccc----cchhhHHHHHHHh-----cCC----ceEEEEeCCCC
Q 001979 86 QLVSEILLD--------------------KN-----VKIW----DVHKGCHMIRIKL-----RHK----RVLLVIDDVDE 127 (987)
Q Consensus 86 ~ll~~l~~~--------------------~~-----~~~~----~~~~~~~~l~~~L-----~~k----~~LlVlDdv~~ 127 (987)
+.+...... .. .-.. ........+.... .++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 222221100 00 0000 0111111221111 133 35999999976
Q ss_pred h--HHHHHHhcCCCCCCCCcEEEEEeCC-cc------------cccc-cCcCceEEcCCCCHHHHHHHHHHhhccCCCCC
Q 001979 128 F--DQLQALAGQRDWFGLGSRIIITTRD-RH------------LLVR-CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPT 191 (987)
Q Consensus 128 ~--~~~~~l~~~~~~~~~gs~IiiTtR~-~~------------v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 191 (987)
. +..+.+...+..... ..++++|.. .. +... ......+++++++.++..+++...+-.....
T Consensus 201 l~~~~~~~L~~~le~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~- 278 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE- 278 (368)
T ss_dssp SBHHHHHHHHHHTTCTTC-CEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC-
T ss_pred cChHHHHHHHHHhhCcCC-CeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence 4 344455444433222 344445432 10 1011 1222458999999999999999877543322
Q ss_pred ChHHHHHHHHHHHhC-CCchhHHHHh
Q 001979 192 DGYFELSHSMVNYAD-GLPLALEILG 216 (987)
Q Consensus 192 ~~~~~~~~~i~~~~~-G~PLal~~l~ 216 (987)
-..+..+.+++++. |.|-.+..+.
T Consensus 279 -~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 279 -MSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp -BCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred -CCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 12356788889998 8886655443
No 174
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.48 E-value=1.5e-06 Score=96.23 Aligned_cols=186 Identities=10% Similarity=0.028 Sum_probs=105.5
Q ss_pred CCCCCCccccchhHHHHHHHhcC----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhh
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGT----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVS 75 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 75 (987)
+..-++++|.+..++++.+.+.. .....+.|.|+|++|+|||++|+++++..... .+.+. ..+..
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~----~~~i~-~~~l~ 154 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT----FFSIS-ASSLT 154 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE----EEEEE-GGGGC
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe----EEEEe-hHHhh
Confidence 34457899999999999887742 11234678999999999999999999875321 22333 11111
Q ss_pred hccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh-------------HHHHHHhcCC----
Q 001979 76 QTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF-------------DQLQALAGQR---- 138 (987)
Q Consensus 76 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~---- 138 (987)
.... .. .... ....+...-..++.+|+||+++.. .....+...+
T Consensus 155 ~~~~-g~-~~~~-----------------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 155 SKWV-GE-GEKM-----------------VRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp CSST-TH-HHHH-----------------HHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC--
T ss_pred cccc-ch-HHHH-----------------HHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc
Confidence 1100 00 0000 011111222356789999999542 1122222221
Q ss_pred CCCCCCcEEEEEeCCcccccc---cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCC-CchhHHH
Q 001979 139 DWFGLGSRIIITTRDRHLLVR---CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADG-LPLALEI 214 (987)
Q Consensus 139 ~~~~~gs~IiiTtR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-~PLal~~ 214 (987)
.....+..||.||.....+.. -.....+.++..+.++..+++...+........ .+....+++.+.| .+-.+..
T Consensus 216 ~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~l~~la~~t~G~s~~dl~~ 293 (357)
T 3d8b_A 216 TSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS--EEEIEQIVQQSDAFSGADMTQ 293 (357)
T ss_dssp --CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC--HHHHHHHHHHTTTCCHHHHHH
T ss_pred ccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc--HHHHHHHHHHcCCCCHHHHHH
Confidence 112334566667765432221 123457889999999999999877643322211 3467788888888 4555655
Q ss_pred Hhh
Q 001979 215 LGS 217 (987)
Q Consensus 215 l~~ 217 (987)
+..
T Consensus 294 l~~ 296 (357)
T 3d8b_A 294 LCR 296 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 175
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.48 E-value=1.2e-08 Score=113.61 Aligned_cols=160 Identities=15% Similarity=0.132 Sum_probs=97.8
Q ss_pred CCCCEEecCCCCCCCCCCC-----C-CCCCcccEEeccCCcCCccccCc-cccCCCCcEEeCcCCCCCccCCchhhhhhH
Q 001979 443 RHLKFIKLSHSVHLTKTPD-----F-TGVPKLERLVLDGCTNLSFVHPS-IGLLKRLKVLNMKECIRIKSFPAEIEWASL 515 (987)
Q Consensus 443 ~~L~~L~Ls~~~~~~~~~~-----~-~~l~~L~~L~L~~~~~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~~i~~~~l 515 (987)
++|+.|+|++|.+...... + ...++|++|+|++|......... ...+++|++|+|++|..... . ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~-~----~~~L 146 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE-A----CKDL 146 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH-H----HHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH-H----HHHH
Confidence 4566666666654322111 1 12356777777776543322222 22356777888887732211 1 1111
Q ss_pred -HHh-hhccccceeecCCcCCcc-----cCccccCCCCCCEEeccCCCCCc----ccCccCCCCCCCCEEEecCCCCCC-
Q 001979 516 -EIV-QNAKRLLQLHLDQTSIEE-----IPPSIKFLSRLTVLTLRDCKKLV----SLPSSISDLRSLKVLNLNGCSKLE- 583 (987)
Q Consensus 516 -~~~-~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~l~~c~~l~- 583 (987)
..+ ...++|++|+|++|.++. ++..+..+++|++|+|++|.... .++..+...++|+.|++++|....
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 111 235678888888888763 55556778888889988887543 234556677889999999987653
Q ss_pred ---cccccccCCCCCcEeeCCCCCCCC
Q 001979 584 ---EVPENLGHIASLENLDLGGTAIRR 607 (987)
Q Consensus 584 ---~lp~~l~~l~~L~~L~L~~~~i~~ 607 (987)
.++..+...++|++|+|++|.++.
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 244556677899999999998874
No 176
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.48 E-value=1.8e-06 Score=91.17 Aligned_cols=183 Identities=14% Similarity=0.128 Sum_probs=102.5
Q ss_pred CCCCccccchhHHHHHHHhcC---C-------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc
Q 001979 8 ASEKLVGMDYRLEQIYLMLGT---G-------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT 77 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 77 (987)
.-++++|.+..++++.+++.. . ....+.|.|+|++|+|||++|+++++.....| +.+. .......
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~----~~~~-~~~~~~~ 78 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF----LAMA-GAEFVEV 78 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE----EEEE-TTTTSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE----EEec-hHHHHhh
Confidence 347899999988888776531 1 12335688999999999999999999764322 2232 1111100
Q ss_pred cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh-----------------HHHHHHhcCCCC
Q 001979 78 RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF-----------------DQLQALAGQRDW 140 (987)
Q Consensus 78 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-----------------~~~~~l~~~~~~ 140 (987)
..-. ........+.......+.+|+|||++.. ..+..+......
T Consensus 79 ~~~~-------------------~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 139 (262)
T 2qz4_A 79 IGGL-------------------GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG 139 (262)
T ss_dssp STTH-------------------HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHT
T ss_pred ccCh-------------------hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhC
Confidence 0000 0001111222333356789999999764 112333322211
Q ss_pred --CCCCcEEEEEeCCcccccc-c----CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCch-hH
Q 001979 141 --FGLGSRIIITTRDRHLLVR-C----DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPL-AL 212 (987)
Q Consensus 141 --~~~gs~IiiTtR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al 212 (987)
...+..||.||.....+.. . ..+..+.++..+.++..+++...+...... .........+++.+.|.+- .+
T Consensus 140 ~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l 218 (262)
T 2qz4_A 140 MGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT-QSSTFYSQRLAELTPGFSGADI 218 (262)
T ss_dssp CCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHH
T ss_pred cCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHCCCCCHHHH
Confidence 1235567777765432221 1 234678899999999999998876433322 2222234678888888754 44
Q ss_pred HHH
Q 001979 213 EIL 215 (987)
Q Consensus 213 ~~l 215 (987)
..+
T Consensus 219 ~~l 221 (262)
T 2qz4_A 219 ANI 221 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 177
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.47 E-value=6.2e-07 Score=101.94 Aligned_cols=183 Identities=17% Similarity=0.093 Sum_probs=106.0
Q ss_pred CCCcc-ccchhH--HHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCc-ceEEEEehHhhhhccCHHHHH
Q 001979 9 SEKLV-GMDYRL--EQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDD-GSSFLANVREVSQTRGLVALQ 84 (987)
Q Consensus 9 ~~~~v-Gr~~~~--~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~ 84 (987)
.+.|| |..... ..+......... ...+.|+|++|+||||||+++++.+...+.+ .+++++ .. .+.
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~----~~------~~~ 172 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----SE------KFL 172 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE----HH------HHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----HH------HHH
Confidence 35566 654433 333444333222 5678999999999999999999987666531 234444 11 122
Q ss_pred HHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh----HHHHHHhcCCCC-CCCCcEEEEEeCCccc---
Q 001979 85 EQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF----DQLQALAGQRDW-FGLGSRIIITTRDRHL--- 156 (987)
Q Consensus 85 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IiiTtR~~~v--- 156 (987)
.++...+... ....+.+.++.+.-+|+|||++.. ...+.+...+.. ...|..||+||....-
T Consensus 173 ~~~~~~~~~~----------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 173 NDLVDSMKEG----------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_dssp HHHHHHHHTT----------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCS
T ss_pred HHHHHHHHcc----------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHH
Confidence 3333332111 122344445546779999999543 222333222211 1357789999886321
Q ss_pred ------ccccCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHH
Q 001979 157 ------LVRCDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEI 214 (987)
Q Consensus 157 ------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 214 (987)
...+.....+++++++.++..+++...+......-+ .+....|++.+.|.+-.+.-
T Consensus 243 ~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~--~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 243 EFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP--EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp SCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHHH
Confidence 111222357889999999999999887743222111 24467788889998865543
No 178
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.47 E-value=1.3e-06 Score=97.00 Aligned_cols=200 Identities=11% Similarity=0.008 Sum_probs=108.6
Q ss_pred CCCCCCccccchhHHHHHHHh-cCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHh-----------
Q 001979 6 LSASEKLVGMDYRLEQIYLML-GTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVRE----------- 73 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L-~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~----------- 73 (987)
|...++++|.+..++.+..++ ..+. ... +.|+|+.|+||||+|+.++..+-..-. +.+++.....
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~-g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGV-YRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTC-CC------------------C
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCC-CeEEecceeecccccccceee
Confidence 334578999999999999988 5432 223 889999999999999999996532222 2221110000
Q ss_pred -----------hhhc-cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH--HHHHHhcCCC
Q 001979 74 -----------VSQT-RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD--QLQALAGQRD 139 (987)
Q Consensus 74 -----------~~~~-~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~l~~~~~ 139 (987)
.+.. .......++.+..+....... ... .+ ..+.+++-++|||+++..+ ..+++...+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le 159 (354)
T 1sxj_E 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD-----FQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTME 159 (354)
T ss_dssp CEECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHH
T ss_pred eecccceEEecHhhcCCcchHHHHHHHHHHHHhcccc-----ccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHH
Confidence 0000 000001112222211100000 000 00 0023366799999997742 2334443333
Q ss_pred CCCCCcEEEEEeCCcc-ccccc-CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 140 WFGLGSRIIITTRDRH-LLVRC-DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 140 ~~~~gs~IiiTtR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
....+.++|++|.+.. +.... .....+++++++.++..+.+...+......-+ ..+....|++.++|.+-.+..+.
T Consensus 160 ~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE-TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp HSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC-CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHcCCCHHHHHHHH
Confidence 2345778888887643 22221 33468999999999999999887643322111 02567889999999987665444
No 179
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.46 E-value=2.7e-06 Score=90.38 Aligned_cols=170 Identities=15% Similarity=0.080 Sum_probs=94.7
Q ss_pred CCCccccchhHHHHHH-------HhcC-CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCH
Q 001979 9 SEKLVGMDYRLEQIYL-------MLGT-GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGL 80 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~-------~L~~-~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~ 80 (987)
...++|.+..++++.. .+.. .....+.+.|+|++|+|||++|+++++.....| +.+....... ....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~----~~i~~~~~~~-g~~~ 106 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF----IKICSPDKMI-GFSE 106 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE----EEEECGGGCT-TCCH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE----EEEeCHHHhc-CCch
Confidence 3578999888777665 2321 134567899999999999999999999753222 2222111000 0000
Q ss_pred HHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh------------HHHHHHhcCCC---CCCCCc
Q 001979 81 VALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF------------DQLQALAGQRD---WFGLGS 145 (987)
Q Consensus 81 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~------------~~~~~l~~~~~---~~~~gs 145 (987)
... .......+......+..+|+|||++.. ..++.+...+. ..+...
T Consensus 107 ~~~------------------~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~ 168 (272)
T 1d2n_A 107 TAK------------------CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKL 168 (272)
T ss_dssp HHH------------------HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEE
T ss_pred HHH------------------HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCE
Confidence 000 001111222333467889999998643 12333333222 223345
Q ss_pred EEEEEeCCcccccc---c-CcCceEEcCCCCH-HHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCC
Q 001979 146 RIIITTRDRHLLVR---C-DVEDTYMVEKLNY-NEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGL 208 (987)
Q Consensus 146 ~IiiTtR~~~v~~~---~-~~~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 208 (987)
.||.||.....+.. . .....+++++++. ++..+++.... . . ..+....+++.+.|.
T Consensus 169 ~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~-~---~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 169 LIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N-F---KDKERTTIAQQVKGK 229 (272)
T ss_dssp EEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C-S---CHHHHHHHHHHHTTS
T ss_pred EEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C-C---CHHHHHHHHHHhcCC
Confidence 56778877644332 1 2246789999988 66666665421 1 1 134577888888884
No 180
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.39 E-value=7.1e-07 Score=98.74 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=46.1
Q ss_pred ccccceeecCC-cCCcccC-ccccCCCCCCEEeccCCCCCcccCccCCCCCCCCEEEecCCCCCCcccc-cccCCCCCcE
Q 001979 521 AKRLLQLHLDQ-TSIEEIP-PSIKFLSRLTVLTLRDCKKLVSLPSSISDLRSLKVLNLNGCSKLEEVPE-NLGHIASLEN 597 (987)
Q Consensus 521 l~~L~~L~L~~-~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~ 597 (987)
+++|+.|+|++ |.++.+| ..+..+++|+.|+|++|...+..|..|.++++|+.|+|++|... .+|. .+..+. |+.
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~-L~~ 107 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-LQE 107 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC-CCE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCC-ceE
Confidence 33344444442 4444444 23556666666666666555545555666666666666665443 3333 333333 777
Q ss_pred eeCCCCCCCC
Q 001979 598 LDLGGTAIRR 607 (987)
Q Consensus 598 L~L~~~~i~~ 607 (987)
|+|.+|.+..
T Consensus 108 l~l~~N~~~c 117 (347)
T 2ifg_A 108 LVLSGNPLHC 117 (347)
T ss_dssp EECCSSCCCC
T ss_pred EEeeCCCccC
Confidence 7777776654
No 181
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.39 E-value=2.2e-06 Score=97.25 Aligned_cols=179 Identities=16% Similarity=0.163 Sum_probs=105.4
Q ss_pred CCCCCccccchhH---HHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHH
Q 001979 7 SASEKLVGMDYRL---EQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 7 ~~~~~~vGr~~~~---~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 83 (987)
...+.+||.+..+ +.+...+..+ ....+.|||++|+||||+|+.+++.....|. .+.. ...+...+
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~----~l~a-----~~~~~~~i 91 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVE----RISA-----VTSGVKEI 91 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE----EEET-----TTCCHHHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE----EEEe-----ccCCHHHH
Confidence 4457899999888 6777777653 3467899999999999999999998644332 1211 11222222
Q ss_pred HHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH--HHHHHhcCCCCCCCCcEEEE-EeCCcc--ccc
Q 001979 84 QEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD--QLQALAGQRDWFGLGSRIII-TTRDRH--LLV 158 (987)
Q Consensus 84 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~Iii-TtR~~~--v~~ 158 (987)
++++... ......+++.+|+||+++... +.+.+...+.. ....+|. ||.+.. +..
T Consensus 92 -r~~~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~ 151 (447)
T 3pvs_A 92 -REAIERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNS 151 (447)
T ss_dssp -HHHHHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCH
T ss_pred -HHHHHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCH
Confidence 1111110 011124678899999997643 33333333221 2234444 444432 111
Q ss_pred c-cCcCceEEcCCCCHHHHHHHHHHhhccCC-----CCCChHHHHHHHHHHHhCCCchhHHHHh
Q 001979 159 R-CDVEDTYMVEKLNYNEALHLFSWKAFRKG-----HPTDGYFELSHSMVNYADGLPLALEILG 216 (987)
Q Consensus 159 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~G~PLal~~l~ 216 (987)
. .....++.+++++.++..+++.+.+-... ....-..+..+.++++++|.+-.+..+.
T Consensus 152 aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 152 ALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1 12345889999999999999988764311 1111224567888899999887655433
No 182
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.39 E-value=3.2e-06 Score=93.28 Aligned_cols=183 Identities=14% Similarity=0.097 Sum_probs=103.7
Q ss_pred CCCCCccccchhHHHHHHHhcC----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhh
Q 001979 7 SASEKLVGMDYRLEQIYLMLGT----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQ 76 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 76 (987)
..-++++|.+..+++|.+.+.. .....+-|.|+|++|+|||++|+++++.....| +.+. ..+...
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~-~~~l~~ 122 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVS-SSDLVS 122 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEE-HHHHHS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEee-HHHHhh
Confidence 3447899999999999887621 112235688999999999999999999864222 2222 111110
Q ss_pred ccCHHHHHHHHHHHHhcCCCcccccchhhHHHH-HHHhcCCceEEEEeCCCChH-------------HHHHHhcCCC---
Q 001979 77 TRGLVALQEQLVSEILLDKNVKIWDVHKGCHMI-RIKLRHKRVLLVIDDVDEFD-------------QLQALAGQRD--- 139 (987)
Q Consensus 77 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l-~~~L~~k~~LlVlDdv~~~~-------------~~~~l~~~~~--- 139 (987)
.... ........+ ...-..++.+|+||+++... ....+...+.
T Consensus 123 -------------~~~g-------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 123 -------------KWMG-------ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp -------------CC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC
T ss_pred -------------hhcc-------hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc
Confidence 0000 011111112 22223577899999997532 1223322211
Q ss_pred CCCCCcEEEEEeCCcccccc---cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCC-chhHHHH
Q 001979 140 WFGLGSRIIITTRDRHLLVR---CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGL-PLALEIL 215 (987)
Q Consensus 140 ~~~~gs~IiiTtR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~l 215 (987)
....+..||.||.....+.. -..+..+.++..+.++..+++..++........ ......|++.+.|. +-.|..+
T Consensus 183 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 183 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp ---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred ccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 11345566667765432211 134567889999999999999887643322111 24567788888884 4344444
Q ss_pred h
Q 001979 216 G 216 (987)
Q Consensus 216 ~ 216 (987)
.
T Consensus 261 ~ 261 (355)
T 2qp9_X 261 V 261 (355)
T ss_dssp H
T ss_pred H
Confidence 3
No 183
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.38 E-value=1.4e-07 Score=104.01 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=44.4
Q ss_pred CCCcccEEecCCCCCCCCCCccc---cCCCCCCCEEeCCCCCCcc-----cchhhhccCCCcEEecCCCc
Q 001979 659 GLHCLSRLDLGDCNLQEGAIPND---LGSLSALTNLTLSRNNFFS-----LPASINQLSRLETLNIDYCN 720 (987)
Q Consensus 659 ~l~~L~~L~Ls~~~l~~~~lp~~---l~~l~~L~~L~L~~n~l~~-----lp~~i~~l~~L~~L~L~~c~ 720 (987)
.+++|+.|+|++|.+.+.. +.. ...+++|++|+|+.|.+.. ++..+..+++|+.|+|++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~-~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVV-VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHH-HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHH-HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 5788899999888775311 111 2357889999999988873 56666788999999998874
No 184
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.37 E-value=7.6e-06 Score=89.37 Aligned_cols=179 Identities=14% Similarity=0.053 Sum_probs=100.4
Q ss_pred CCCCCcc-ccch--hHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHH
Q 001979 7 SASEKLV-GMDY--RLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVAL 83 (987)
Q Consensus 7 ~~~~~~v-Gr~~--~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 83 (987)
...++|| |... ....+..++.........+.|+|++|+||||||+++++.....-. ..++++. . .+
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~-~~~~i~~----~------~~ 76 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGY-RVIYSSA----D------DF 76 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTC-CEEEEEH----H------HH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCC-EEEEEEH----H------HH
Confidence 3456676 5433 334455555443223467889999999999999999998754422 3455541 1 11
Q ss_pred HHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH----HHHHHhcCCCC-CCCCcEEEEEeCCccc--
Q 001979 84 QEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD----QLQALAGQRDW-FGLGSRIIITTRDRHL-- 156 (987)
Q Consensus 84 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTtR~~~v-- 156 (987)
...+...+... ....+.+... +.-+|+|||++... ..+.+...+.. ...|.+||+||....-
T Consensus 77 ~~~~~~~~~~~----------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l 145 (324)
T 1l8q_A 77 AQAMVEHLKKG----------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 145 (324)
T ss_dssp HHHHHHHHHHT----------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHHHHHHHcC----------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHH
Confidence 22233222110 1112233332 36699999996532 22222222111 1346678888864321
Q ss_pred ---cc----ccCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchh
Q 001979 157 ---LV----RCDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLA 211 (987)
Q Consensus 157 ---~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 211 (987)
.. .+.....+++++ +.++..+++...+......-+ .+..+.+++++ |..-.
T Consensus 146 ~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~--~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 146 DGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR--KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp TTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHC-SSHHH
T ss_pred HHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhC-CCHHH
Confidence 11 112235789999 999999999888753332222 35677788888 77643
No 185
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.37 E-value=6.8e-06 Score=88.52 Aligned_cols=175 Identities=11% Similarity=0.100 Sum_probs=101.0
Q ss_pred CCCCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhh
Q 001979 8 ASEKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQ 76 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 76 (987)
.-++++|.+..++++.+++.. +-...+.|.|+|++|+|||++|++++...... .+.+. .
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~----~i~v~----~-- 82 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISIK----G-- 82 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE----EEEEC----H--
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC----EEEEE----h--
Confidence 346799999999998887642 12334678999999999999999999976422 22222 1
Q ss_pred ccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH----------------HHHHHhcCCCC
Q 001979 77 TRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD----------------QLQALAGQRDW 140 (987)
Q Consensus 77 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~ 140 (987)
..+ .....+.. .......+.......+.+|++|+++... ....+...+..
T Consensus 83 ----~~l----~~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 83 ----PEL----LTMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp ----HHH----HHHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred ----HHH----HhhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 111 12212111 1111223333334567899999997521 12223222211
Q ss_pred --CCCCcEEEEEeCCcccccc--c---CcCceEEcCCCCHHHHHHHHHHhhccCCCC-CChHHHHHHHHHHHhCCCch
Q 001979 141 --FGLGSRIIITTRDRHLLVR--C---DVEDTYMVEKLNYNEALHLFSWKAFRKGHP-TDGYFELSHSMVNYADGLPL 210 (987)
Q Consensus 141 --~~~gs~IiiTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~PL 210 (987)
...+..||.||.....+.. . .....+.++..+.++..+++..+....... ..+ ...++..+.|.|-
T Consensus 149 ~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg 222 (301)
T 3cf0_A 149 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSG 222 (301)
T ss_dssp SCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCH
T ss_pred ccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCH
Confidence 1345677777776533221 1 244688999999999999998776332211 112 2345556666653
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.34 E-value=1.8e-05 Score=86.01 Aligned_cols=184 Identities=14% Similarity=0.071 Sum_probs=104.0
Q ss_pred CCCCCccccchhHHHHHHHhcC---------C-CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhh
Q 001979 7 SASEKLVGMDYRLEQIYLMLGT---------G-LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQ 76 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 76 (987)
..-++++|.+..+++|.+.+.. + ....+.|.|+|++|+|||++|+++++.... . ..+.+. ..+...
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-~--~~~~i~-~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-S--TFFSIS-SSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-C--EEEEEE-CCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-C--cEEEEE-hHHHHh
Confidence 3457899999999998876621 1 123467899999999999999999997621 0 112222 110000
Q ss_pred ccCHHHHHHHHHHHHhcCCCcccccchhhHHHHH-HHhcCCceEEEEeCCCCh-------------HHHHHHhcCCC---
Q 001979 77 TRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIR-IKLRHKRVLLVIDDVDEF-------------DQLQALAGQRD--- 139 (987)
Q Consensus 77 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~--- 139 (987)
. . ....+.....+. ..-..++.+|+||+++.. .....+...+.
T Consensus 85 ~------------------~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 144 (322)
T 1xwi_A 85 K------------------W--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 144 (322)
T ss_dssp S------------------S--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS
T ss_pred h------------------h--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc
Confidence 0 0 000111111122 222357789999999764 11222322221
Q ss_pred CCCCCcEEEEEeCCcccccc-c--CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc-hhHHHH
Q 001979 140 WFGLGSRIIITTRDRHLLVR-C--DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP-LALEIL 215 (987)
Q Consensus 140 ~~~~gs~IiiTtR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P-Lal~~l 215 (987)
....+..||.||........ + ..+..+.++..+.++..+++..++........ ......|++.+.|.. -.|..+
T Consensus 145 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 145 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT--EADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp SCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC--HHHHHHHHHTCTTCCHHHHHHH
T ss_pred ccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 12345556667765433221 1 34467889999999999999887633222111 245678888888864 335444
Q ss_pred h
Q 001979 216 G 216 (987)
Q Consensus 216 ~ 216 (987)
.
T Consensus 223 ~ 223 (322)
T 1xwi_A 223 V 223 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 187
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.34 E-value=5e-06 Score=90.82 Aligned_cols=179 Identities=13% Similarity=0.112 Sum_probs=105.6
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQ 86 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (987)
...+++||.+..++.+.+++..+. ...++.+.|++|+|||++|+++++.+.. ....++ .+. .+...+ ++
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~----~~~~i~----~~~-~~~~~i-~~ 91 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNA----DMMFVN----GSD-CKIDFV-RG 91 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTE----EEEEEE----TTT-CCHHHH-HT
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCC----CEEEEc----ccc-cCHHHH-HH
Confidence 345789999999999999998542 3357788899999999999999988632 233343 111 222222 22
Q ss_pred HHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH---HHHHHhcCCCCCCCCcEEEEEeCCccccc-c-cC
Q 001979 87 LVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD---QLQALAGQRDWFGLGSRIIITTRDRHLLV-R-CD 161 (987)
Q Consensus 87 ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~IiiTtR~~~v~~-~-~~ 161 (987)
.+....... ...+++-+|++||++... ..+.+...+.....+.++|+||....-.. . ..
T Consensus 92 ~~~~~~~~~----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 92 PLTNFASAA----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp HHHHHHHBC----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred HHHHHHhhc----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 222111100 012477899999998754 34444443332335678888887653211 1 11
Q ss_pred cCceEEcCCCCHHHHHHHHH-------HhhccCCCCCChHHHHHHHHHHHhCCCchhHH
Q 001979 162 VEDTYMVEKLNYNEALHLFS-------WKAFRKGHPTDGYFELSHSMVNYADGLPLALE 213 (987)
Q Consensus 162 ~~~~~~l~~L~~~ea~~Lf~-------~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 213 (987)
....+++++++.+|..+++. ..+.......++ .+....+++.++|.+-.+.
T Consensus 156 R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD-MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC-HHHHHHHHHHTCSCTTHHH
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHhCCCCHHHHH
Confidence 23579999999888544322 222211111110 2567788889988876544
No 188
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.33 E-value=3.9e-06 Score=94.16 Aligned_cols=182 Identities=18% Similarity=0.121 Sum_probs=101.4
Q ss_pred CCCCccccchhHHHHHHHhcC----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc
Q 001979 8 ASEKLVGMDYRLEQIYLMLGT----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT 77 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 77 (987)
.-++++|.+..++++.+++.. .....+.|.|+|++|+|||++|++++.+....| +.+. ......
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~----~~v~-~~~l~~- 186 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF----FNIS-AASLTS- 186 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE----EEEC-SCCC---
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE----EEee-HHHhhc-
Confidence 346899999999999987721 011236788999999999999999988753221 2222 110000
Q ss_pred cCHHHHHHHHHHHHhcCCCcccccchhhHH-HHHHHhcCCceEEEEeCCCCh-------------HHHHHHhcCC----C
Q 001979 78 RGLVALQEQLVSEILLDKNVKIWDVHKGCH-MIRIKLRHKRVLLVIDDVDEF-------------DQLQALAGQR----D 139 (987)
Q Consensus 78 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~-~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~----~ 139 (987)
... . ....... .+...-..++.+|+||+++.. .....+...+ .
T Consensus 187 --------~~~----g-------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 247 (389)
T 3vfd_A 187 --------KYV----G-------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS 247 (389)
T ss_dssp ------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-
T ss_pred --------ccc----c-------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc
Confidence 000 0 0001111 112222345679999999754 1111222111 1
Q ss_pred CCCCCcEEEEEeCCcccccc---cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCch-hHHHH
Q 001979 140 WFGLGSRIIITTRDRHLLVR---CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPL-ALEIL 215 (987)
Q Consensus 140 ~~~~gs~IiiTtR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al~~l 215 (987)
.......||.||.....+.. -.....+.++..+.++..+++...+-....... .+....+++.+.|..- ++..+
T Consensus 248 ~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 248 AGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp ----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 11234556667765432221 123357889999999999999887744332222 2466788888888654 55554
Q ss_pred h
Q 001979 216 G 216 (987)
Q Consensus 216 ~ 216 (987)
.
T Consensus 326 ~ 326 (389)
T 3vfd_A 326 A 326 (389)
T ss_dssp H
T ss_pred H
Confidence 4
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.32 E-value=4.2e-06 Score=83.00 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=42.7
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
...+.++||+.+++++.+.+... ..+.+.|+|++|+||||+|+.+++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34578999999999999998653 3456789999999999999999998644
No 190
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.29 E-value=9.5e-06 Score=92.33 Aligned_cols=183 Identities=17% Similarity=0.161 Sum_probs=105.6
Q ss_pred CCCCCccccchhHHHHHHHhcC---------C-CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhh
Q 001979 7 SASEKLVGMDYRLEQIYLMLGT---------G-LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQ 76 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 76 (987)
..-++++|.+...+.|.+.+.. + ....+.|.|+|++|+|||++|+++++... ..-|+. ++.
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-----~~~~~~----v~~ 201 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFFS----ISS 201 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-----SSEEEE----ECC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-----CCCEEE----EeH
Confidence 3347799999999999887621 0 12346789999999999999999999761 111221 110
Q ss_pred ccCHHHHHHHHHHHHhcCCCcccccchhhHHHH-HHHhcCCceEEEEeCCCCh-------------HHHHHHhcCCCCC-
Q 001979 77 TRGLVALQEQLVSEILLDKNVKIWDVHKGCHMI-RIKLRHKRVLLVIDDVDEF-------------DQLQALAGQRDWF- 141 (987)
Q Consensus 77 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l-~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~- 141 (987)
.. + .....+. .......+ ...-..++.+|+||+++.. .....+...+...
T Consensus 202 -~~---l----~~~~~g~-------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 266 (444)
T 2zan_A 202 -SD---L----VSKWLGE-------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 266 (444)
T ss_dssp -C-----------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS
T ss_pred -HH---H----Hhhhcch-------HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc
Confidence 00 0 1110110 01111222 2222357789999999764 2244555544332
Q ss_pred --CCCcEEEEEeCCcccccc---cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCC-chhHHHH
Q 001979 142 --GLGSRIIITTRDRHLLVR---CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGL-PLALEIL 215 (987)
Q Consensus 142 --~~gs~IiiTtR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~l 215 (987)
..+..||.||.....+.. -..+..+.++..+.++..+++..++........ ......|++.+.|. +-.|..+
T Consensus 267 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 267 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT--EADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp CCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC--HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCCHHHHHHH
Confidence 345667777766533221 134467889999999999999887643221111 24567788888884 3344444
No 191
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.27 E-value=2.4e-07 Score=102.11 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=30.5
Q ss_pred cccCCCCCCCEEecCCCCCC---------CCCCC-CCCCCcccEEeccCCcCCccccCccccCCCCcEEeCcCC
Q 001979 437 QGVQNMRHLKFIKLSHSVHL---------TKTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKEC 500 (987)
Q Consensus 437 ~~~~~l~~L~~L~Ls~~~~~---------~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c 500 (987)
+....+++|+.|.+...... ..+.. +..+|+|+.|+|++|... .++. + .+++|++|+|..|
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISG 203 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECS
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecC
Confidence 33445566666666543210 01111 345567777777665322 2222 2 2566777777655
No 192
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.26 E-value=4.7e-05 Score=85.55 Aligned_cols=100 Identities=18% Similarity=0.306 Sum_probs=52.1
Q ss_pred CCCCCCCcccEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccch-hhhccCCCcEEecCCCcccccCCCCccccc
Q 001979 655 PSLSGLHCLSRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPA-SINQLSRLETLNIDYCNRLKALPELPASID 733 (987)
Q Consensus 655 ~~l~~l~~L~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~ 733 (987)
..|.++..|+.+.+...... .-...+.++++|+.+.+. +.++.++. .+.++.+|+.+.|.. .++.++.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~------ 327 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILD------ 327 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECT------
T ss_pred ceeeecccccEEecccccce--ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehH------
Confidence 34566666777766544321 112345566677777664 34555553 445666677666643 2333322
Q ss_pred ccccccccccccccCCCcccCCCCceEEecccccc
Q 001979 734 GLFAHNCTSLIKLCSPSNITRLTPRMFYLSNCFKL 768 (987)
Q Consensus 734 ~L~~~~C~~L~~l~~~~~l~~~~~~~l~~~~C~~L 768 (987)
--+.+|.+|+++..+..+..+.. --|.+|.+|
T Consensus 328 -~aF~~C~~L~~i~ip~sv~~I~~--~aF~~C~~L 359 (394)
T 4gt6_A 328 -DAFAGCEQLERIAIPSSVTKIPE--SAFSNCTAL 359 (394)
T ss_dssp -TTTTTCTTCCEEEECTTCCBCCG--GGGTTCTTC
T ss_pred -hHhhCCCCCCEEEECcccCEEhH--hHhhCCCCC
Confidence 12446666666665544443321 135666665
No 193
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.23 E-value=1.2e-05 Score=86.53 Aligned_cols=184 Identities=19% Similarity=0.157 Sum_probs=104.1
Q ss_pred CCCCCCccccchhHHHHHHHhcCC----------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhh
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGTG----------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVS 75 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 75 (987)
+..-++++|.+..++.+.+.+... ....+.|.|+|++|+||||+|++++......| +.+. .....
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~----~~i~-~~~l~ 91 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF----LNIS-AASLT 91 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE----EEEE-STTTS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEee-HHHHh
Confidence 344578999999999998876320 11246789999999999999999998763222 2222 11110
Q ss_pred hccCHHHHHHHHHHHHhcCCCcccccchhhHH-HHHHHhcCCceEEEEeCCCCh-------------HHHHHHhcC---C
Q 001979 76 QTRGLVALQEQLVSEILLDKNVKIWDVHKGCH-MIRIKLRHKRVLLVIDDVDEF-------------DQLQALAGQ---R 138 (987)
Q Consensus 76 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~-~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~---~ 138 (987)
... ......... .+......++.+|+||+++.. .....+... .
T Consensus 92 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 151 (297)
T 3b9p_A 92 SKY--------------------VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGL 151 (297)
T ss_dssp SSS--------------------CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHC
T ss_pred hcc--------------------cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcc
Confidence 000 000011111 112222356789999999653 111122211 1
Q ss_pred CC--CCCCcEEEEEeCCcccccc-c--CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCch-hH
Q 001979 139 DW--FGLGSRIIITTRDRHLLVR-C--DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPL-AL 212 (987)
Q Consensus 139 ~~--~~~gs~IiiTtR~~~v~~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL-al 212 (987)
.. .+.+..||.||.....+.. . .....+.++..+.++..+++...+........ .+....+++.+.|.+- ++
T Consensus 152 ~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~~~~~l 229 (297)
T 3b9p_A 152 PGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGYSGSDL 229 (297)
T ss_dssp C------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTCCHHHH
T ss_pred cccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCHHHH
Confidence 11 1234566777776532221 0 23457888888999999998877643322211 2456788889999875 55
Q ss_pred HHHh
Q 001979 213 EILG 216 (987)
Q Consensus 213 ~~l~ 216 (987)
..+.
T Consensus 230 ~~l~ 233 (297)
T 3b9p_A 230 TALA 233 (297)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 194
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.18 E-value=0.00024 Score=79.65 Aligned_cols=127 Identities=9% Similarity=0.176 Sum_probs=70.7
Q ss_pred cccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccccccCCCCCCCCCCCccccCCCCCCCcccEEe
Q 001979 588 NLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFYPRANRDSLGFFIPSLSGLHCLSRLD 667 (987)
Q Consensus 588 ~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~ 667 (987)
.|..+.+|+.+.+..+...--...+..+++|+.+.+...-. ......|.++.+|+.++
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~----------------------~I~~~aF~~c~~L~~i~ 317 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRIT----------------------ELPESVFAGCISLKSID 317 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCC----------------------EECTTTTTTCTTCCEEE
T ss_pred eeeecccccEEecccccceecCcccccccccccccCCCccc----------------------ccCceeecCCCCcCEEE
Confidence 45566667777665443222233455667777777643210 01124577788888888
Q ss_pred cCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccch-hhhccCCCcEEecCCCcccccCCCCcccccccccccccccccc
Q 001979 668 LGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPA-SINQLSRLETLNIDYCNRLKALPELPASIDGLFAHNCTSLIKL 746 (987)
Q Consensus 668 Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~~~~C~~L~~l 746 (987)
|..+ +.. .-...+.++.+|+.+.|..+ ++.+.. .+.++++|+.+++.++... + -.+..|..|+.+
T Consensus 318 lp~~-v~~-I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--~---------~~~~~~~~L~~i 383 (394)
T 4gt6_A 318 IPEG-ITQ-ILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--W---------NAISTDSGLQNL 383 (394)
T ss_dssp CCTT-CCE-ECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--H---------HTCBCCCCC---
T ss_pred eCCc-ccE-ehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--h---------hhhhccCCCCEE
Confidence 8654 221 11345778888888888643 666653 5678888888888764321 0 123567777777
Q ss_pred cCCC
Q 001979 747 CSPS 750 (987)
Q Consensus 747 ~~~~ 750 (987)
..+.
T Consensus 384 ~i~~ 387 (394)
T 4gt6_A 384 PVAP 387 (394)
T ss_dssp ----
T ss_pred EeCC
Confidence 6443
No 195
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.16 E-value=7.1e-06 Score=88.96 Aligned_cols=153 Identities=11% Similarity=0.038 Sum_probs=89.1
Q ss_pred CccccchhHHHHHHHhcC-------------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC--Cc-ceEEEEehHhh
Q 001979 11 KLVGMDYRLEQIYLMLGT-------------GLDEARILGICGMGGIGKTTLARFVFDNISYQF--DD-GSSFLANVREV 74 (987)
Q Consensus 11 ~~vGr~~~~~~l~~~L~~-------------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f--~~-~~~~~~~~~~~ 74 (987)
.+||.+..++++.+++.. .......+.|+|++|+|||++|+++++.+.... .. ..+.+. ....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 589999999988876531 023345788999999999999999998764321 10 122222 1110
Q ss_pred hhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCC-----------ChHHHHHHhcCCCCCCC
Q 001979 75 SQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVD-----------EFDQLQALAGQRDWFGL 143 (987)
Q Consensus 75 ~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~-----------~~~~~~~l~~~~~~~~~ 143 (987)
. ..+.. .........+... +.-+|+||+++ .......+...+.....
T Consensus 111 ~-------------~~~~g------~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~ 168 (309)
T 3syl_A 111 V-------------GQYIG------HTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRD 168 (309)
T ss_dssp C-------------CSSTT------CHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTT
T ss_pred h-------------hhccc------ccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCC
Confidence 0 00000 0000111112111 34599999997 33444555544443455
Q ss_pred CcEEEEEeCCcccc------ccc--CcCceEEcCCCCHHHHHHHHHHhhcc
Q 001979 144 GSRIIITTRDRHLL------VRC--DVEDTYMVEKLNYNEALHLFSWKAFR 186 (987)
Q Consensus 144 gs~IiiTtR~~~v~------~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~ 186 (987)
+..||.||...... ..+ .....+++++++.++..+++...+..
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 169 DLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp TCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 67888888643211 000 12368999999999999999887643
No 196
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=7.2e-05 Score=82.13 Aligned_cols=181 Identities=13% Similarity=0.152 Sum_probs=105.9
Q ss_pred CCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-CCcceEEEEehHhhhhccCHHHHHHHH
Q 001979 9 SEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ-FDDGSSFLANVREVSQTRGLVALQEQL 87 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~l 87 (987)
-+.++|.+..++.+...+..+ +...+.++|++|+||||+|+.++..+... +......++ .+...+...+. +.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~----~~~~~~~~~ir-~~ 96 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN----ASDDRGIDVVR-NQ 96 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC----TTSCCSHHHHH-TH
T ss_pred HHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc----CcccccHHHHH-HH
Confidence 466889998899998888754 23338899999999999999999976432 221112222 11112222221 11
Q ss_pred HHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCcc-cccc-cCcC
Q 001979 88 VSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDRH-LLVR-CDVE 163 (987)
Q Consensus 88 l~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~~-v~~~-~~~~ 163 (987)
+..+..... ...+.+-++|+|+++.. +..+++...+......+++|++|.... +... ....
T Consensus 97 i~~~~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 97 IKDFASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 211110000 01234678999999653 334444433333345677777776542 2111 1233
Q ss_pred ceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHH
Q 001979 164 DTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALE 213 (987)
Q Consensus 164 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~ 213 (987)
..+++.+++.++..+.+...+-.....- ..+..+.+++.++|.+--+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i--~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKL--SPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCB--CHHHHHHHHHHHTTCHHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 5789999999999998877653222211 13567789999999887543
No 197
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.13 E-value=3.1e-05 Score=84.63 Aligned_cols=183 Identities=15% Similarity=0.081 Sum_probs=103.8
Q ss_pred chhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHH----
Q 001979 16 DYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEI---- 91 (987)
Q Consensus 16 ~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l---- 91 (987)
+...+.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+....... ....+.....+.+....
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~----------~~~c~~c~~c~~~~~~~~~d~ 76 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG----------HKSCGHCRGCQLMQAGTHPDY 76 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT----------TBCCSCSHHHHHHHHTCCTTE
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC----------CCCCCCCHHHHHHhcCCCCCE
Confidence 45566677777643 2235788999999999999999999764332100 00000000001111000
Q ss_pred --hcCCC-cccccchhhHHHHHHHh-----cCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCcc-ccccc
Q 001979 92 --LLDKN-VKIWDVHKGCHMIRIKL-----RHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDRH-LLVRC 160 (987)
Q Consensus 92 --~~~~~-~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~~-v~~~~ 160 (987)
....+ ......++ ...+.+.+ .+++-++|+|+++.. +..+++...+....+++.+|++|.+.+ +....
T Consensus 77 ~~~~~~~~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti 155 (334)
T 1a5t_A 77 YTLAPEKGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATL 155 (334)
T ss_dssp EEECCCTTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHH
T ss_pred EEEeccccCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 00000 00000111 11222222 245678999999874 345556555544455777777777653 33222
Q ss_pred -CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhh
Q 001979 161 -DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGS 217 (987)
Q Consensus 161 -~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~ 217 (987)
.....+++++++.++..+.+.... . . ..+.+..+++.++|.|..+..+..
T Consensus 156 ~SRc~~~~~~~~~~~~~~~~L~~~~---~-~---~~~~~~~l~~~s~G~~r~a~~~l~ 206 (334)
T 1a5t_A 156 RSRCRLHYLAPPPEQYAVTWLSREV---T-M---SQDALLAALRLSAGSPGAALALFQ 206 (334)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHC---C-C---CHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred hhcceeeeCCCCCHHHHHHHHHHhc---C-C---CHHHHHHHHHHcCCCHHHHHHHhc
Confidence 344689999999999999998765 1 1 124567899999999977655543
No 198
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.12 E-value=0.00043 Score=77.21 Aligned_cols=125 Identities=14% Similarity=0.186 Sum_probs=68.1
Q ss_pred CCCCCCCCEEEecCCCCCCcc-cccccCCCCCcEeeCCCCCCCCC-CccccCCCCCcEEEccCCCCCCCCcccccccCCC
Q 001979 565 ISDLRSLKVLNLNGCSKLEEV-PENLGHIASLENLDLGGTAIRRP-PSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFY 642 (987)
Q Consensus 565 l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~L~~~~i~~~-p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l 642 (987)
+....+|+.+.+... +..+ ...+..+.+|+.+.+..+ ++.+ ...+..+.+|+.+.+...-.
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~-------------- 275 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVK-------------- 275 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCS--------------
T ss_pred cccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccce--------------
Confidence 344555555555431 2222 223455566666665443 3322 22344566666666643210
Q ss_pred CCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCC-ccccCCCCCCCEEeCCCCCCcccch-hhhccCCCcEEecC
Q 001979 643 PRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAI-PNDLGSLSALTNLTLSRNNFFSLPA-SINQLSRLETLNID 717 (987)
Q Consensus 643 ~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~ 717 (987)
......|.++++|+.+.+.++.+.. + ...+.++.+|+.+.|..+ ++.+.. .+.++++|+.+.+.
T Consensus 276 --------~i~~~aF~~c~~L~~i~l~~~~i~~--I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 276 --------TVPYLLCSGCSNLTKVVMDNSAIET--LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp --------EECTTTTTTCTTCCEEEECCTTCCE--ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred --------eccccccccccccccccccccccce--ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 0112346777888888887776542 3 345777888888888643 666653 45666666666553
No 199
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=3.6e-05 Score=84.35 Aligned_cols=173 Identities=17% Similarity=0.226 Sum_probs=101.5
Q ss_pred CCCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc
Q 001979 9 SEKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT 77 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 77 (987)
-+++.|.+...++|.+.+.. +-...+-|.++|++|.|||.||+++++.....|- .+. ..+....
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~----~v~-~s~l~sk 221 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI----RVS-GAELVQK 221 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE----EEE-GGGGSCS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce----EEE-hHHhhcc
Confidence 37788999999999876532 2234567889999999999999999998643331 222 1111111
Q ss_pred cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH----------------HHHHHhcCCCCC
Q 001979 78 RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD----------------QLQALAGQRDWF 141 (987)
Q Consensus 78 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~ 141 (987)
..- + ....++. .+...-...+++|++|++|..- .+..++..+..+
T Consensus 222 ~vG-e-se~~vr~-----------------lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 222 YIG-E-GSRMVRE-----------------LFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp STT-H-HHHHHHH-----------------HHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred ccc-h-HHHHHHH-----------------HHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 000 0 0011111 1122224578999999996421 133333322211
Q ss_pred --CCCcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhhccCCCC-CChHHHHHHHHHHHhCCCc
Q 001979 142 --GLGSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKAFRKGHP-TDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 142 --~~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 209 (987)
..+..||.||.....+.. -..+..++++..+.++..++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 234456667776554332 2456899999999999999998776433222 122 456777777754
No 200
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.10 E-value=0.00027 Score=78.88 Aligned_cols=295 Identities=11% Similarity=0.107 Sum_probs=153.3
Q ss_pred CCCceEEEcCCCCcccccc-ccCCCCCCCEEecCCCCCCCCCCC--CCCCCcccEEeccCCcCCccccCccccCCCCcEE
Q 001979 419 PERLFKLNICYSLVEQLWQ-GVQNMRHLKFIKLSHSVHLTKTPD--FTGVPKLERLVLDGCTNLSFVHPSIGLLKRLKVL 495 (987)
Q Consensus 419 ~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~--~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L 495 (987)
..+|+.+.++. .++.+.+ +|.++.+|+.++|..+ .+.+.+ |.++ +|+.+.+.. .+..+........+|+.+
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~L~~i 118 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTDLDDF 118 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCCCSEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc--eeeEeccceeccCCcccc
Confidence 34555666553 3555543 5777777777777654 223332 6655 566665543 234444432233467777
Q ss_pred eCcCCCCCccCCchhhhhhHHHhhhccccceeecCCcCCcccC-ccccCCCCCCEEeccCCCCCcc------------cC
Q 001979 496 NMKECIRIKSFPAEIEWASLEIVQNAKRLLQLHLDQTSIEEIP-PSIKFLSRLTVLTLRDCKKLVS------------LP 562 (987)
Q Consensus 496 ~L~~c~~l~~lp~~i~~~~l~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~------------lp 562 (987)
.+..+ +..+.... +.+ .+|+.+.+..+ ++.+. ..+..+.+++.+.+..+..... ..
T Consensus 119 ~lp~~--~~~i~~~~-------F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (379)
T 4h09_A 119 EFPGA--TTEIGNYI-------FYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL 187 (379)
T ss_dssp ECCTT--CCEECTTT-------TTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred cCCCc--cccccccc-------ccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceeccccccee
Confidence 76542 22222211 111 13333333322 22221 2244556666665554322111 11
Q ss_pred ccCCCCCCCCEEEecCCCCCCcccccccCCCCCcEeeCCCCCCCCCCccccCCCCCcEEEccCCCCCCCCcccccccCCC
Q 001979 563 SSISDLRSLKVLNLNGCSKLEEVPENLGHIASLENLDLGGTAIRRPPSTIVLLENLKELSFHGCKGQRKSWSSLIWLPFY 642 (987)
Q Consensus 563 ~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~~p~~i~~l~~L~~L~L~~~~~~~~~~~~~~~~~~l 642 (987)
..+.....+..+.+.... .......+....+|+.+.+..+-..--...+..+.+|+.+.+..+-.
T Consensus 188 ~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~-------------- 252 (379)
T 4h09_A 188 ESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVT-------------- 252 (379)
T ss_dssp EECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCC--------------
T ss_pred ccccccccccccccccce-eEEeecccccccccceeeeccceeEEccccccCCccceEEEcCCCcc--------------
Confidence 122233344444433211 11112334455666666664432111123445666777777654310
Q ss_pred CCCCCCCCccccCCCCCCCcccEEecCCCCCCCCCCc-cccCCCCCCCEEeCCCCCCcccch-hhhccCCCcEEecCCCc
Q 001979 643 PRANRDSLGFFIPSLSGLHCLSRLDLGDCNLQEGAIP-NDLGSLSALTNLTLSRNNFFSLPA-SINQLSRLETLNIDYCN 720 (987)
Q Consensus 643 ~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 720 (987)
......+.++.+|+.+.+..+ +.. ++ ..+.++++|+.+.+.++.++.++. .+.++.+|+.+.|..
T Consensus 253 --------~I~~~aF~~~~~l~~i~l~~~-i~~--i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-- 319 (379)
T 4h09_A 253 --------SIGSFLLQNCTALKTLNFYAK-VKT--VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-- 319 (379)
T ss_dssp --------EECTTTTTTCTTCCEEEECCC-CSE--ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--
T ss_pred --------EeCccccceeehhcccccccc-cee--ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc--
Confidence 111245778888999998754 221 33 357788999999999888888864 567889999988853
Q ss_pred ccccCCCCcccccccccccccccccccCCCcccCCCCceEEeccccc
Q 001979 721 RLKALPELPASIDGLFAHNCTSLIKLCSPSNITRLTPRMFYLSNCFK 767 (987)
Q Consensus 721 ~L~~lp~lp~sL~~L~~~~C~~L~~l~~~~~l~~~~~~~l~~~~C~~ 767 (987)
.++.++. --..+|.+|+++..+..+..+... .|.+|..
T Consensus 320 ~l~~I~~-------~aF~~C~~L~~i~ip~~v~~I~~~--aF~~c~~ 357 (379)
T 4h09_A 320 ALKTIQV-------YAFKNCKALSTISYPKSITLIESG--AFEGSSI 357 (379)
T ss_dssp TCCEECT-------TTTTTCTTCCCCCCCTTCCEECTT--TTTTSSC
T ss_pred cccEEHH-------HHhhCCCCCCEEEECCccCEEchh--HhhCCCC
Confidence 2444433 235689999888766654433221 3566643
No 201
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.08 E-value=4.2e-06 Score=79.36 Aligned_cols=48 Identities=21% Similarity=0.193 Sum_probs=36.0
Q ss_pred CCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 10 EKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
+++||++..++++.+.+..-.....-|.|+|++|+|||++|+++++..
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999988775322222457899999999999999999864
No 202
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.04 E-value=0.00018 Score=78.50 Aligned_cols=254 Identities=15% Similarity=0.136 Sum_probs=129.2
Q ss_pred CCCCccccchhHHHHHHHhcCC---CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHH
Q 001979 8 ASEKLVGMDYRLEQIYLMLGTG---LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQ 84 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 84 (987)
.-+.++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...+. ... ..+. ....++
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~s--g~~~--~~~~~l- 93 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VTS--GPVL--VKQGDM- 93 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EEE--TTTC--CSHHHH-
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEe--chHh--cCHHHH-
Confidence 3467899988888887766432 123467899999999999999999998743332 111 0000 000010
Q ss_pred HHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--HHHHHHhcCCCCC--------C----------CC
Q 001979 85 EQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--DQLQALAGQRDWF--------G----------LG 144 (987)
Q Consensus 85 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~--------~----------~g 144 (987)
..+...+ .++-++++|+++.. ...+.+....... + +.
T Consensus 94 ----------------------~~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 94 ----------------------AAILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp ----------------------HHHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred ----------------------HHHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 0011112 23457778887553 2223222111000 0 11
Q ss_pred cEEEE-EeCCccccccc--CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHHhhhh--
Q 001979 145 SRIII-TTRDRHLLVRC--DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEILGSFL-- 219 (987)
Q Consensus 145 s~Iii-TtR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l~~~L-- 219 (987)
..++- |++...+.... .....+.+++.+.++..+++.+.+-..... ...+.+..|++.+.|.|-.+.-+...+
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIRLTKRVRD 228 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 22332 34433222111 222368899999999999998876432222 224668899999999997554333221
Q ss_pred ----cCC---CHHHHHHHHHhhhcCCCchHHHHHHHhHhCccHHHHHHHhheeeccCC--CCHHHHHHHHHhCCCCcccc
Q 001979 220 ----FAR---SKAEWKDALDRLKYVPDQKIFEILKISYDGLQETEKKIFLDIACFFKG--KDKDQVRELLDSCDFYPEIG 290 (987)
Q Consensus 220 ----~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~--~~~~~l~~~~~~~~~~~~~~ 290 (987)
.+. +.+.-+.+++.+.. ...+++...+..+..++-.+++ ...+.+......+....+..
T Consensus 229 ~a~~~~~~~It~~~v~~al~~~~~------------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~ 296 (334)
T 1in4_A 229 MLTVVKADRINTDIVLKTMEVLNI------------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEV 296 (334)
T ss_dssp HHHHHTCSSBCHHHHHHHHHHHTC------------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHhCC------------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHH
Confidence 111 33334444443321 1135566555555444433333 23334443333221001111
Q ss_pred ch-hhhcccceEEe-CCeE
Q 001979 291 IS-VLIDKCIITLS-NNIL 307 (987)
Q Consensus 291 ~~-~L~~~~Li~~~-~~~~ 307 (987)
.+ .|...++|+.. .++.
T Consensus 297 ~~~~l~~~g~i~~~~~gr~ 315 (334)
T 1in4_A 297 YEPYLLQAGFLARTPRGRI 315 (334)
T ss_dssp THHHHHHTTSEEEETTEEE
T ss_pred HHHHHHHcCCeecccccHH
Confidence 11 67888998887 4444
No 203
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=3e-05 Score=86.41 Aligned_cols=175 Identities=17% Similarity=0.199 Sum_probs=100.5
Q ss_pred CCCCCCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhh
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREV 74 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~ 74 (987)
...-+++.|.+...++|.+.+.. +-...+-|.++|++|.|||.+|++++.+....|- .+. ..+.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~----~v~-~s~l 251 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL----KLA-APQL 251 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE----EEE-GGGG
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE----EEe-hhhh
Confidence 33457899999999998875421 2234577899999999999999999998643321 122 1111
Q ss_pred hhcc-CHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH----------------HHHHHhcC
Q 001979 75 SQTR-GLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD----------------QLQALAGQ 137 (987)
Q Consensus 75 ~~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~ 137 (987)
.... +-. ...++. .....-...+++|++|+++..- .+..++..
T Consensus 252 ~~~~vGes---e~~ir~-----------------lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ 311 (434)
T 4b4t_M 252 VQMYIGEG---AKLVRD-----------------AFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQ 311 (434)
T ss_dssp CSSCSSHH---HHHHHH-----------------HHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHH
T ss_pred hhcccchH---HHHHHH-----------------HHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHH
Confidence 1110 100 011111 1111123468999999985320 12333333
Q ss_pred CCCCC--CCcEEEEEeCCcccccc-c----CcCceEEcCCCCHHHHHHHHHHhhccCCCC-CChHHHHHHHHHHHhCCCc
Q 001979 138 RDWFG--LGSRIIITTRDRHLLVR-C----DVEDTYMVEKLNYNEALHLFSWKAFRKGHP-TDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 138 ~~~~~--~gs~IiiTtR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 209 (987)
+..+. .+-.||.||.....+.. + ..+..++++..+.++..++|..+.-+.... .-+ ...+++.+.|.-
T Consensus 312 ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 312 LDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp HTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred hhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 33222 33455667776554432 1 345689999999999999998776433222 112 356677777653
No 204
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.00 E-value=4.4e-05 Score=87.42 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=83.7
Q ss_pred CCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC-----CcceEEEEehHhhhhccCHHH
Q 001979 8 ASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQF-----DDGSSFLANVREVSQTRGLVA 82 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~~ 82 (987)
..+.+|||+.+++++...+.... ..-+.|+|++|+|||++|+.++..+...+ .+..++..+..
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------
Confidence 44679999999999999997532 23567999999999999999999874432 11222211110
Q ss_pred HHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCccc------
Q 001979 83 LQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDRHL------ 156 (987)
Q Consensus 83 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~~v------ 156 (987)
....+. ........+...-..++.+|++| ...+....+...+. ....++|.+|.....
T Consensus 246 ------~~~~g~------~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 ------TKYRGE------FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ------ccccch------HHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 000000 00111222333334567899999 22222333444332 224566666655431
Q ss_pred ccc-cCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 157 LVR-CDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 157 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
... ......+.++..+.++..+++...+
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 111 1122479999999999999998765
No 205
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.00 E-value=1.1e-05 Score=92.43 Aligned_cols=179 Identities=15% Similarity=0.100 Sum_probs=100.6
Q ss_pred CCccccchhHHHHHHHhcCC-----------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhcc
Q 001979 10 EKLVGMDYRLEQIYLMLGTG-----------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTR 78 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (987)
+.++|.+..++++.+++... ....+-|.|+|++|+|||++|+++++.... ..+.+. ..+.....
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~----~fv~vn-~~~l~~~~ 278 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLIN-GPEIMSKL 278 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS----EEEEEE-HHHHHTSC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC----CEEEEE-chHhhhhh
Confidence 56899999999998877421 233456889999999999999999987522 122232 22111110
Q ss_pred CHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh-------------HHHHHHhcCCC--CCCC
Q 001979 79 GLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF-------------DQLQALAGQRD--WFGL 143 (987)
Q Consensus 79 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-------------~~~~~l~~~~~--~~~~ 143 (987)
. .. ........+.....+++.+|+||+++.. .....+...+. ....
T Consensus 279 ~-g~------------------~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 279 A-GE------------------SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp T-TH------------------HHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred c-ch------------------hHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 0 00 0011122233334567789999998321 11222322221 1133
Q ss_pred CcEEEEEeCCccccc-c----cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCC-chhHHHH
Q 001979 144 GSRIIITTRDRHLLV-R----CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGL-PLALEIL 215 (987)
Q Consensus 144 gs~IiiTtR~~~v~~-~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~l 215 (987)
+.+||.||.....+. . ......+.++..+.++..+++..++.......+ ....++++.+.|. +-.+..+
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHH
Confidence 456666776553221 1 123457899999999999999887643222211 1135566667664 4344444
No 206
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00013 Score=81.15 Aligned_cols=172 Identities=16% Similarity=0.178 Sum_probs=99.8
Q ss_pred CCCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc
Q 001979 9 SEKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT 77 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 77 (987)
-+++.|.+...++|.+.+.. +-...+-|.++|++|.|||+||++++++....|- .+. ..+....
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi----~vs-~s~L~sk 282 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI----RVI-GSELVQK 282 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE----EEE-GGGGCCC
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE----EEE-hHHhhcc
Confidence 36889999999999876421 2234577889999999999999999998643331 222 1111111
Q ss_pred -cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH----------------HHHHHhcCCCC
Q 001979 78 -RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD----------------QLQALAGQRDW 140 (987)
Q Consensus 78 -~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~ 140 (987)
.+-. ...+ ...+...-...+++|++|+++..- .+..++..+..
T Consensus 283 ~vGes---ek~i-----------------r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 342 (467)
T 4b4t_H 283 YVGEG---ARMV-----------------RELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG 342 (467)
T ss_dssp SSSHH---HHHH-----------------HHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS
T ss_pred cCCHH---HHHH-----------------HHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc
Confidence 0100 0011 111222224678999999986421 12222222221
Q ss_pred C--CCCcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhhccCCCC-CChHHHHHHHHHHHhCCCc
Q 001979 141 F--GLGSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKAFRKGHP-TDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 141 ~--~~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 209 (987)
. ..+..||.||.....+.. -..+..++++..+.++..++|..+.-+.... .-+ ...|++.+.|.-
T Consensus 343 ~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 343 FDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp SCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred cCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 1 234445667765544332 1456789999999999999998776433222 112 356677777753
No 207
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00013 Score=81.43 Aligned_cols=173 Identities=18% Similarity=0.232 Sum_probs=101.1
Q ss_pred CCCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc
Q 001979 9 SEKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT 77 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 77 (987)
-+++.|.+..+++|.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .+. ..+....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~----~v~-~s~l~sk 254 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI----FSP-ASGIVDK 254 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE----EEE-GGGTCCS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEe-hhhhccc
Confidence 47788999999998876632 2234578899999999999999999998643321 222 1111111
Q ss_pred cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH----------------HHHHHhcCCC--
Q 001979 78 RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD----------------QLQALAGQRD-- 139 (987)
Q Consensus 78 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~-- 139 (987)
..-. ....++ ......-...+++|++|++|..- .+..++..+.
T Consensus 255 ~~Ge--se~~ir-----------------~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 255 YIGE--SARIIR-----------------EMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp SSSH--HHHHHH-----------------HHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred cchH--HHHHHH-----------------HHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 0000 000111 11122224678999999996420 1233333222
Q ss_pred CCCCCcEEEEEeCCccccccc-----CcCceEEcCCCCHHHHHHHHHHhhccCCCC-CChHHHHHHHHHHHhCCCc
Q 001979 140 WFGLGSRIIITTRDRHLLVRC-----DVEDTYMVEKLNYNEALHLFSWKAFRKGHP-TDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 140 ~~~~gs~IiiTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 209 (987)
....+..||.||.....+... ..+..++++..+.++..++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 112355677788766544321 245688999999999999998776433222 222 356677777754
No 208
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.0002 Score=78.70 Aligned_cols=173 Identities=17% Similarity=0.235 Sum_probs=99.2
Q ss_pred CCCCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhh
Q 001979 8 ASEKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQ 76 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 76 (987)
.-+++.|.+...++|.+.+.. +-...+-|.++|++|.|||.||++++.+....|- .+. ..+...
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi----~v~-~s~l~s 254 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL----RIV-GSELIQ 254 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE----EEE-SGGGCC
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE----EEE-HHHhhh
Confidence 347788999999998876531 1234577899999999999999999998643331 121 111111
Q ss_pred cc-CHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh----------------HHHHHHhcCCC
Q 001979 77 TR-GLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF----------------DQLQALAGQRD 139 (987)
Q Consensus 77 ~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~ 139 (987)
.. +-. ...++ ..+...-...+++|++|++|.. ..+..++..+.
T Consensus 255 k~vGes---ek~ir-----------------~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 255 KYLGDG---PRLCR-----------------QIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 314 (437)
T ss_dssp SSSSHH---HHHHH-----------------HHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH
T ss_pred ccCchH---HHHHH-----------------HHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh
Confidence 10 000 01111 1111222357899999998632 11223332221
Q ss_pred C--CCCCcEEEEEeCCcccccc-c----CcCceEEcCCCCHHHHHHHHHHhhccCCCC-CChHHHHHHHHHHHhCCCc
Q 001979 140 W--FGLGSRIIITTRDRHLLVR-C----DVEDTYMVEKLNYNEALHLFSWKAFRKGHP-TDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 140 ~--~~~gs~IiiTtR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 209 (987)
. ...+..||.||.....+.. + ..+..++++..+.++..++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 315 g~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 315 GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp HCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 1 1234456667766554432 1 345678899999999999998776433222 112 356667777653
No 209
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00012 Score=81.43 Aligned_cols=172 Identities=21% Similarity=0.240 Sum_probs=95.0
Q ss_pred CCCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc
Q 001979 9 SEKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT 77 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 77 (987)
-+++.|.+...++|.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .+. ..+....
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~----~v~-~~~l~~~ 245 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFI----RVN-GSEFVHK 245 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEE----EEE-GGGTCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE----EEe-cchhhcc
Confidence 46889999999998876532 2234567899999999999999999998643321 222 1111111
Q ss_pred -cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh----------------HHHHHHhcCCC-
Q 001979 78 -RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF----------------DQLQALAGQRD- 139 (987)
Q Consensus 78 -~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~- 139 (987)
.+-. ...++ ..+...-...+++|++|+++.. ..+..++..+.
T Consensus 246 ~~Ge~---e~~ir-----------------~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg 305 (428)
T 4b4t_K 246 YLGEG---PRMVR-----------------DVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG 305 (428)
T ss_dssp SCSHH---HHHHH-----------------HHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH
T ss_pred ccchh---HHHHH-----------------HHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC
Confidence 0000 00111 1112222457899999998421 01233332221
Q ss_pred -CCCCCcEEEEEeCCcccccc-----cCcCceEEcCCC-CHHHHHHHHHHhhccCCCC-CChHHHHHHHHHHHhCCCc
Q 001979 140 -WFGLGSRIIITTRDRHLLVR-----CDVEDTYMVEKL-NYNEALHLFSWKAFRKGHP-TDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 140 -~~~~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L-~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~G~P 209 (987)
....+..||.||.....+.. ...+..++++.+ +.++..++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 306 ~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 306 FDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 12334566777776544322 134457888655 6666777887665332221 222 356667777653
No 210
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.85 E-value=4.8e-05 Score=74.98 Aligned_cols=50 Identities=24% Similarity=0.239 Sum_probs=34.4
Q ss_pred CCCcccc----chhHHHHHHHhcCCC-CCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 9 SEKLVGM----DYRLEQIYLMLGTGL-DEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 9 ~~~~vGr----~~~~~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
-+++++. ...++.+.+++..-. ...+.++|+|++|+||||||++++..+.
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3566653 334444555554321 2347899999999999999999999875
No 211
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.85 E-value=9.1e-06 Score=86.06 Aligned_cols=155 Identities=17% Similarity=0.223 Sum_probs=87.5
Q ss_pred CCCCCCccccchhHHHHHHHhcC----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhh
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGT----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVS 75 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 75 (987)
+...++++|.+..++++.+.+.. +....+-|.|+|++|+|||++|+++++.....|- .+. .....
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~----~v~-~~~~~ 81 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF----SMG-GSSFI 81 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC----CCC-SCTTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE----Eec-hHHHH
Confidence 34457899999999998887641 1111234789999999999999999998654432 111 00000
Q ss_pred hccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH-----------------HHHHHhcCC
Q 001979 76 QTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD-----------------QLQALAGQR 138 (987)
Q Consensus 76 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-----------------~~~~l~~~~ 138 (987)
. ...... ...... .+......++.+|+|||++... .+..+...+
T Consensus 82 ~-------------~~~~~~---~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l 142 (268)
T 2r62_A 82 E-------------MFVGLG---ASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEM 142 (268)
T ss_dssp T-------------SCSSSC---SSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTT
T ss_pred H-------------hhcchH---HHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHh
Confidence 0 000000 001111 2222333466899999996532 122233333
Q ss_pred CCCC---CCcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 139 DWFG---LGSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 139 ~~~~---~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
.... ....||.||.....+.. ......+.++..+.++..+++...+
T Consensus 143 ~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 143 DGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp TCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred hCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 2211 22456677766543221 1234568888889999999887765
No 212
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.84 E-value=8.4e-05 Score=91.09 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=89.0
Q ss_pred CCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC-----CcceEEEEehHhhhhccCHHH
Q 001979 8 ASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQF-----DDGSSFLANVREVSQTRGLVA 82 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~~ 82 (987)
..+.+|||+.+++++.+.|... ...-+.|+|++|+||||+|+.++..+.... .+..+|.......
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l-------- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-------- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH--------
Confidence 3467999999999999999754 234567999999999999999999763321 1123332211100
Q ss_pred HHHHHHHHHhcCCCcccccchhhHHHHHHHh-cCCceEEEEeCCCCh----------HHHHHHhcCCCCCCCCcEEEEEe
Q 001979 83 LQEQLVSEILLDKNVKIWDVHKGCHMIRIKL-RHKRVLLVIDDVDEF----------DQLQALAGQRDWFGLGSRIIITT 151 (987)
Q Consensus 83 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~IiiTt 151 (987)
..... .....+.....+.+.+ ..++.+|++||++.. .+...++..... ..+.++|.+|
T Consensus 254 ---------~~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at 322 (758)
T 1r6b_X 254 ---------LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGST 322 (758)
T ss_dssp ----------CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEE
T ss_pred ---------hcccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEe
Confidence 00000 0011122222222333 345789999999754 222233332221 2345666666
Q ss_pred CCcccccc-------cCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 152 RDRHLLVR-------CDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 152 R~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
........ ......+.++..+.++..+++...+
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 64321111 1122368999999999999887654
No 213
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.84 E-value=0.00016 Score=75.75 Aligned_cols=181 Identities=14% Similarity=0.101 Sum_probs=96.0
Q ss_pred CCCCCCccccchhHHHHHHHhcC---C-------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhh
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGT---G-------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVS 75 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 75 (987)
+..-++++|.+..++++.+.+.. . ....+-|.|+|++|+||||+|++++......| +.+. .....
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~----~~i~-~~~~~ 82 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF----FTIS-GSDFV 82 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE----EEEC-SCSST
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE----EEEe-HHHHH
Confidence 34457899999888887765421 0 11234588999999999999999998763222 2222 00000
Q ss_pred hccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh----------------HHHHHHhcCCC
Q 001979 76 QTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF----------------DQLQALAGQRD 139 (987)
Q Consensus 76 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~ 139 (987)
... .. .........+.......+.++++|+++.. ..+..+...+.
T Consensus 83 ~~~-------------~~------~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (257)
T 1lv7_A 83 EMF-------------VG------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 143 (257)
T ss_dssp TSC-------------CC------CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHH
T ss_pred HHh-------------hh------hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhh
Confidence 000 00 00011112222333456679999998321 12223322211
Q ss_pred C--CCCCcEEEEEeCCccccc-cc----CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCC-Cchh
Q 001979 140 W--FGLGSRIIITTRDRHLLV-RC----DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADG-LPLA 211 (987)
Q Consensus 140 ~--~~~gs~IiiTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-~PLa 211 (987)
. ...+..||.||....... .. ..+..+.++..+.++..+++..++-......+. ....++..+.| .+--
T Consensus 144 ~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~---~~~~la~~~~G~~~~d 220 (257)
T 1lv7_A 144 GFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI---DAAIIARGTPGFSGAD 220 (257)
T ss_dssp TCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCCHHH
T ss_pred CcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc---cHHHHHHHcCCCCHHH
Confidence 1 123456777776654222 11 234578888889999888887765322111111 12345666666 5544
Q ss_pred HH
Q 001979 212 LE 213 (987)
Q Consensus 212 l~ 213 (987)
+.
T Consensus 221 l~ 222 (257)
T 1lv7_A 221 LA 222 (257)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 214
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.83 E-value=4.7e-05 Score=76.62 Aligned_cols=61 Identities=15% Similarity=0.041 Sum_probs=41.5
Q ss_pred CCCCccccch----hHHHHHHHhcCCCC--CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 8 ASEKLVGMDY----RLEQIYLMLGTGLD--EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 8 ~~~~~vGr~~----~~~~l~~~L~~~~~--~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
..++|++.+. .++.+.+++..... ..+.+.|+|++|+||||||+++++....+.. .++|+.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~-~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNV-SSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTC-CEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEE
Confidence 4567887653 33444555543222 1267889999999999999999998766544 566665
No 215
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.83 E-value=0.00015 Score=82.09 Aligned_cols=175 Identities=17% Similarity=0.179 Sum_probs=100.6
Q ss_pred CCCCccccchhHHHHHHHhcC----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc
Q 001979 8 ASEKLVGMDYRLEQIYLMLGT----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT 77 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 77 (987)
..++++|.+..++++.+.+.. +..-.+-|.|+|++|+||||||++++.+....| +.++ ..+....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is-~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHIS-GSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEE-GGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCC-HHHHHHH
Confidence 346799999988888776532 111224588999999999999999999764322 2222 1111111
Q ss_pred cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh----------------HHHHHHhcCCCCC
Q 001979 78 RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF----------------DQLQALAGQRDWF 141 (987)
Q Consensus 78 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 141 (987)
..-. ........+.......+.+|+||+++.. ..+..+...+..+
T Consensus 89 ~~g~-------------------~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~ 149 (476)
T 2ce7_A 89 FVGV-------------------GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF 149 (476)
T ss_dssp CTTH-------------------HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS
T ss_pred Hhcc-------------------cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc
Confidence 0000 0011122333444567899999999542 1233333322111
Q ss_pred --CCCcEEEEEeCCcccccc--c---CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc
Q 001979 142 --GLGSRIIITTRDRHLLVR--C---DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 142 --~~gs~IiiTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 209 (987)
..+..||.||.....+.. . ..+..+.++..+.++..+++..++-......+. ....+++.+.|..
T Consensus 150 ~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 150 DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 235667777776654332 1 234588999999999999998776432221111 1344777888876
No 216
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.82 E-value=4.3e-05 Score=94.66 Aligned_cols=154 Identities=13% Similarity=0.091 Sum_probs=82.5
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC-----Ccc-eEEEEehHhhhhccCH
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQF-----DDG-SSFLANVREVSQTRGL 80 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~-~~~~~~~~~~~~~~~~ 80 (987)
...+.+|||+.+++++.+.+.... ...+.|+|++|+||||+|+.+++++.... .+. .++++ ......
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~-~~~l~~---- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ-MGSLLA---- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC-C---------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee-hHHhhc----
Confidence 345779999999999999987532 34578999999999999999999864321 112 23332 111100
Q ss_pred HHHHHHHHHHHhcCCCcccccchhhHHHHHHHh-c-CCceEEEEeCCCChH---------H-HHHHhcCCCCCCCCcEEE
Q 001979 81 VALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL-R-HKRVLLVIDDVDEFD---------Q-LQALAGQRDWFGLGSRII 148 (987)
Q Consensus 81 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~-~k~~LlVlDdv~~~~---------~-~~~l~~~~~~~~~gs~Ii 148 (987)
+.... .+.......+.+.+ . +++.+|++|+++... + ...+...+. ..+..+|
T Consensus 240 -------------g~~~~-g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I 303 (854)
T 1qvr_A 240 -------------GAKYR-GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLI 303 (854)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEE
T ss_pred -------------cCccc-hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEE
Confidence 00000 01111112222222 2 367899999997643 1 111111111 1234566
Q ss_pred EEeCCccc-----ccc-cCcCceEEcCCCCHHHHHHHHHHh
Q 001979 149 ITTRDRHL-----LVR-CDVEDTYMVEKLNYNEALHLFSWK 183 (987)
Q Consensus 149 iTtR~~~v-----~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 183 (987)
.+|..... ... ......+.+++++.++..+++...
T Consensus 304 ~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp EEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred EecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 55553321 111 122245899999999999998654
No 217
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.76 E-value=0.00011 Score=79.44 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=38.8
Q ss_pred CCccccchhHHHHHHHhcC------------CCCCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 10 EKLVGMDYRLEQIYLMLGT------------GLDEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~------------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
+.++|.+..++.+...+.. .......+.|+|++|+|||++|+++++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5689999999999877743 011235678999999999999999999763
No 218
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.71 E-value=0.00013 Score=78.19 Aligned_cols=145 Identities=12% Similarity=0.031 Sum_probs=89.4
Q ss_pred ccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhh---cCCCcceEEEEehHhhhh-ccCHHHHHHHHHH
Q 001979 14 GMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNIS---YQFDDGSSFLANVREVSQ-TRGLVALQEQLVS 89 (987)
Q Consensus 14 Gr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~---~~f~~~~~~~~~~~~~~~-~~~~~~l~~~ll~ 89 (987)
|-+..++.+...+..+. .+...++|++|+||||+|+.+++... .... ....+. .+. ..++..+ +++..
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~-d~~~l~----~~~~~~~id~i-r~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKAS-DVLEID----PEGENIGIDDI-RTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTT-TEEEEC----CSSSCBCHHHH-HHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCC-CEEEEc----CCcCCCCHHHH-HHHHH
Confidence 45666778888887643 67888999999999999999988531 1223 233443 111 2233332 22333
Q ss_pred HHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--HHHHHHhcCCCCCCCCcEEEEEeCCc-ccccccCcCceE
Q 001979 90 EILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--DQLQALAGQRDWFGLGSRIIITTRDR-HLLVRCDVEDTY 166 (987)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IiiTtR~~-~v~~~~~~~~~~ 166 (987)
.+.... ..+++-++|+|+++.. ...+++...+....+.+.+|++|.++ .+......- .+
T Consensus 73 ~~~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~ 134 (305)
T 2gno_A 73 FLNYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VF 134 (305)
T ss_dssp HHTSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SE
T ss_pred HHhhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eE
Confidence 321100 1245678899999763 44566655554445677877777554 344443333 89
Q ss_pred EcCCCCHHHHHHHHHHhh
Q 001979 167 MVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 167 ~l~~L~~~ea~~Lf~~~a 184 (987)
++++++.++..+.+...+
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999998765
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.70 E-value=0.00019 Score=87.71 Aligned_cols=149 Identities=13% Similarity=0.069 Sum_probs=84.6
Q ss_pred CCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC-----CcceEEEEehHhhhhccCHHH
Q 001979 8 ASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQF-----DDGSSFLANVREVSQTRGLVA 82 (987)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~~ 82 (987)
..+.+|||+.+++++...|.... ..-+.|+|++|+|||++|+.+++.+.... .+..++..+.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------
Confidence 44679999999999999997532 23477999999999999999999863321 1122221100
Q ss_pred HHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCccc------
Q 001979 83 LQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDRHL------ 156 (987)
Q Consensus 83 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~~v------ 156 (987)
.....+ .........+......++.+|++| ...+....+...+. ....++|.||.....
T Consensus 245 -----g~~~~G------~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 -----GTKYRG------EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -----cccccc------hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 000000 001112223333344678899999 22233333444333 234566666665441
Q ss_pred cccc-CcCceEEcCCCCHHHHHHHHHHhh
Q 001979 157 LVRC-DVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 157 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
.... .....+.++..+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1110 122579999999999999998654
No 220
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.70 E-value=7.9e-05 Score=78.60 Aligned_cols=50 Identities=18% Similarity=0.144 Sum_probs=34.9
Q ss_pred CCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 9 SEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
.+.+||.+..++++.+.+..-......|.|+|++|+|||++|+.+++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 35689999999988776643112224677999999999999999998654
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.68 E-value=0.00018 Score=77.74 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=40.2
Q ss_pred CCccccchhHHHHHHHhcCC------C-CCeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 10 EKLVGMDYRLEQIYLMLGTG------L-DEARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~------~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
+.++|.+..++.+...+... . .....+.|+|++|+||||+|+.++......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 56889999999988877532 1 123579999999999999999999976443
No 222
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.67 E-value=0.00022 Score=81.53 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=38.8
Q ss_pred CCCccccchhHHHHHHHh---cCCCCCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 9 SEKLVGMDYRLEQIYLML---GTGLDEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L---~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
.+.+||.+..++++..++ ..+....+-+.++|++|+|||++|+++++.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 478999999888765544 33322335688999999999999999999865
No 223
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=2.1e-05 Score=76.00 Aligned_cols=88 Identities=10% Similarity=0.199 Sum_probs=61.7
Q ss_pred CCCCceEEEcCCCCcccc-ccccCCCCCCCEEecCCCCCCCCC--CCCCCC----CcccEEeccCCcCCcc-ccCccccC
Q 001979 418 QPERLFKLNICYSLVEQL-WQGVQNMRHLKFIKLSHSVHLTKT--PDFTGV----PKLERLVLDGCTNLSF-VHPSIGLL 489 (987)
Q Consensus 418 ~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~~--~~~~~l----~~L~~L~L~~~~~l~~-~~~~i~~l 489 (987)
...+|++|+++++.|+.. ...+..+++|+.|+|++|...+.. ..+..+ ++|++|+|++|..++. --..+..+
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 345788889988887753 345678889999999998754431 124443 4788999998876653 22346678
Q ss_pred CCCcEEeCcCCCCCcc
Q 001979 490 KRLKVLNMKECIRIKS 505 (987)
Q Consensus 490 ~~L~~L~L~~c~~l~~ 505 (987)
++|++|++++|..++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 8888888888866654
No 224
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.57 E-value=0.00053 Score=71.63 Aligned_cols=154 Identities=15% Similarity=0.148 Sum_probs=84.1
Q ss_pred CCCCCCccccchhHHHHHHHhcC--C--------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhh
Q 001979 6 LSASEKLVGMDYRLEQIYLMLGT--G--------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVS 75 (987)
Q Consensus 6 ~~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~ 75 (987)
....++++|.+...+++.++... . -.-.+-++|+|++|+||||||+.++.... . ..+.+.. ....
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~---~-~~i~~~~-~~~~ 86 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---V-PFITASG-SDFV 86 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT---C-CEEEEEH-HHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC---C-CEEEeeH-HHHH
Confidence 33457899998877777654421 0 01112388999999999999999998764 2 3344431 1110
Q ss_pred hccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh-cCCceEEEEeCCCChH----------------HHHHHhcCC
Q 001979 76 QTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL-RHKRVLLVIDDVDEFD----------------QLQALAGQR 138 (987)
Q Consensus 76 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~----------------~~~~l~~~~ 138 (987)
... .. ........+.+.. .....++++|+++... .+..+...+
T Consensus 87 ~~~-~~-------------------~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l 146 (254)
T 1ixz_A 87 EMF-VG-------------------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 146 (254)
T ss_dssp HSC-TT-------------------HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHH
T ss_pred HHH-hh-------------------HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHH
Confidence 000 00 0001111122222 2356799999984321 122332222
Q ss_pred CCC--CCCcEEEEEeCCccccccc-----CcCceEEcCCCCHHHHHHHHHHhh
Q 001979 139 DWF--GLGSRIIITTRDRHLLVRC-----DVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 139 ~~~--~~gs~IiiTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
... .....++.||..+.++... ..+..++++..+.++-.+++..++
T Consensus 147 ~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 147 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp HTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred hCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 111 2233455566666554321 345678999999999999987765
No 225
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.57 E-value=1e-05 Score=80.27 Aligned_cols=61 Identities=11% Similarity=0.194 Sum_probs=37.4
Q ss_pred CCcccEEecCCCCCCCCC---CccccCCCCCCCEEeC--CCCCCc-----ccchhhhccCCCcEEecCCCc
Q 001979 660 LHCLSRLDLGDCNLQEGA---IPNDLGSLSALTNLTL--SRNNFF-----SLPASINQLSRLETLNIDYCN 720 (987)
Q Consensus 660 l~~L~~L~Ls~~~l~~~~---lp~~l~~l~~L~~L~L--~~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 720 (987)
.++|++|+|++|.+.+.. +...+...++|++|+| ++|.+. .+...+...++|++|+|++|.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 345666666666654321 2334555567777777 667766 245566666778888887754
No 226
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.57 E-value=1.5e-05 Score=75.25 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=34.2
Q ss_pred CCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 10 EKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
-.++|++..++++.+.+..-.....-|.|+|++|+|||++|+++++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 468999999999888775311122347799999999999999998754
No 227
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.56 E-value=0.0003 Score=75.48 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=37.8
Q ss_pred CCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 10 EKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
+.++|++..++++.+.+..-......|.|+|++|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 468999999999988775422223457799999999999999999864
No 228
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.55 E-value=2.2e-05 Score=77.81 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=28.3
Q ss_pred CCCCEEEecCCCCCCc----ccccccCCCCCcEeeC--CCCCCCC-----CCccccCCCCCcEEEccCCC
Q 001979 569 RSLKVLNLNGCSKLEE----VPENLGHIASLENLDL--GGTAIRR-----PPSTIVLLENLKELSFHGCK 627 (987)
Q Consensus 569 ~~L~~L~l~~c~~l~~----lp~~l~~l~~L~~L~L--~~~~i~~-----~p~~i~~l~~L~~L~L~~~~ 627 (987)
++|++|+|++|..... +.+.+...++|++|+| ++|.+.. +...+...++|++|++++|.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4444555544443221 2334444455555555 4455542 22334445566666666554
No 229
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.53 E-value=0.00077 Score=71.46 Aligned_cols=175 Identities=15% Similarity=0.137 Sum_probs=93.4
Q ss_pred CCCCCccccchhHHHHHHHhcC--C--------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhh
Q 001979 7 SASEKLVGMDYRLEQIYLMLGT--G--------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQ 76 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 76 (987)
...++++|.+...+++.++... . -.-.+-|+|+|++|+||||||+.++.... . ..+.+.. .....
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~---~-~~i~~~~-~~~~~ 111 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR---V-PFITASG-SDFVE 111 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT---C-CEEEEEH-HHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC---C-CEEEecH-HHHHH
Confidence 4457899999887777665421 0 01112388999999999999999998764 2 3344431 11110
Q ss_pred ccCHHHHHHHHHHHHhcCCCcccccchhhHH-HHHHHhcCCceEEEEeCCCCh----------------HHHHHHhcCCC
Q 001979 77 TRGLVALQEQLVSEILLDKNVKIWDVHKGCH-MIRIKLRHKRVLLVIDDVDEF----------------DQLQALAGQRD 139 (987)
Q Consensus 77 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~-~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~ 139 (987)
... .. ...... .++..-.....++|+||++.. ..+..+...+.
T Consensus 112 ~~~-~~-------------------~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ls 171 (278)
T 1iy2_A 112 MFV-GV-------------------GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 171 (278)
T ss_dssp STT-TH-------------------HHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHT
T ss_pred HHh-hH-------------------HHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHh
Confidence 000 00 000111 122222245679999998431 11223332222
Q ss_pred CC--CCCcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc
Q 001979 140 WF--GLGSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 140 ~~--~~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 209 (987)
.. .....++.||..+.++.. ...+..++++..+.++-.+++..++-+.....+. ....++..+.|..
T Consensus 172 gg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~---~~~~la~~~~G~~ 245 (278)
T 1iy2_A 172 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 245 (278)
T ss_dssp TCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc---CHHHHHHHcCCCC
Confidence 11 122345556666655432 1345688999999999999988765322111111 1334566666654
No 230
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.47 E-value=0.00036 Score=74.56 Aligned_cols=28 Identities=36% Similarity=0.524 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
..+.+.++|++|+|||+||+++++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568889999999999999999998743
No 231
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.44 E-value=0.0011 Score=75.59 Aligned_cols=172 Identities=16% Similarity=0.159 Sum_probs=96.2
Q ss_pred CCCCCccccchhHHHHHHHhcC--C--------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhh
Q 001979 7 SASEKLVGMDYRLEQIYLMLGT--G--------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQ 76 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 76 (987)
...++++|.+..++++.++... . ..-.+-|.|+|++|+||||||++++..... ..+.++. .+...
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~----~~i~i~g-~~~~~ 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV----PFITASG-SDFVE 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC----CEEEEEG-GGGTS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC----CEEEEeh-hHHHH
Confidence 4457899999888887765431 0 011234899999999999999999987642 2333431 11110
Q ss_pred ccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcC----CceEEEEeCCCCh----------------HHHHHHhc
Q 001979 77 TRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRH----KRVLLVIDDVDEF----------------DQLQALAG 136 (987)
Q Consensus 77 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~----k~~LlVlDdv~~~----------------~~~~~l~~ 136 (987)
.. .......+...++. ...++++|+++.. ..+..+..
T Consensus 103 ~~-----------------------~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~ 159 (499)
T 2dhr_A 103 MF-----------------------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 159 (499)
T ss_dssp SC-----------------------TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH
T ss_pred hh-----------------------hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH
Confidence 00 00111223333322 3479999998532 12334433
Q ss_pred CCCCC--CCCcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc
Q 001979 137 QRDWF--GLGSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 137 ~~~~~--~~gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 209 (987)
.+..+ ..+..|+.||..+.++.. ...+..+.++..+.++-.+++..++-+.....+. ....++..+.|+.
T Consensus 160 ~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 160 EMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 236 (499)
T ss_dssp HGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSCC
T ss_pred HhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCCC
Confidence 32211 234455666666654332 1244688999999999999998776322211111 1345666666765
No 232
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.41 E-value=0.00017 Score=69.58 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=22.2
Q ss_pred cccEEeccCCcCCccccCccccCCCCcEEeCcCCCCCc
Q 001979 467 KLERLVLDGCTNLSFVHPSIGLLKRLKVLNMKECIRIK 504 (987)
Q Consensus 467 ~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~ 504 (987)
+|++||+++|.....--..+..+++|++|+|++|..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence 56666666665333333445666777777777775443
No 233
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.40 E-value=0.00026 Score=84.87 Aligned_cols=173 Identities=15% Similarity=0.111 Sum_probs=98.2
Q ss_pred CCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhcc
Q 001979 10 EKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTR 78 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (987)
+++.|.+..+++|.+++.. +-...+-|.++|++|.|||+||++++++.... .+.++ ..+.....
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~-~~~l~sk~ 278 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLIN-GPEIMSKL 278 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEE-HHHHHSSC
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEE-hHHhhccc
Confidence 6788999999998886531 11345779999999999999999999875322 22232 11111110
Q ss_pred CHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCChH-------------HHHHHhcCCCCC--CC
Q 001979 79 GLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEFD-------------QLQALAGQRDWF--GL 143 (987)
Q Consensus 79 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~ 143 (987)
.- .........+.......+.+|+||+++..- .+..+...+... ..
T Consensus 279 ~g-------------------ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~ 339 (806)
T 3cf2_A 279 AG-------------------ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp TT-------------------HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred ch-------------------HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence 00 001111122333345678999999986421 123333222111 12
Q ss_pred CcEEEEEeCCcccccc-c----CcCceEEcCCCCHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHhCCCc
Q 001979 144 GSRIIITTRDRHLLVR-C----DVEDTYMVEKLNYNEALHLFSWKAFRKGHPTDGYFELSHSMVNYADGLP 209 (987)
Q Consensus 144 gs~IiiTtR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 209 (987)
+..||.||.....+.. + ..+..++++..+.++-.+++..+.-+.....+ -....+++.+.|.-
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d---vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHV 407 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT---CCHHHHHHHCCSCC
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhcCCCC
Confidence 3445556665433222 1 34568999999999999999877633221111 11456777777754
No 234
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.37 E-value=0.00024 Score=67.21 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=28.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
....++|+|+.|.||||||+.++......-. ..+++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~-~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGK-NAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTC-CEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCC-cEEEEc
Confidence 3468999999999999999999997754211 256664
No 235
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.35 E-value=0.00045 Score=84.46 Aligned_cols=150 Identities=14% Similarity=0.145 Sum_probs=84.0
Q ss_pred CCccccchhHHHHHHHhcCCC-------CCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHH
Q 001979 10 EKLVGMDYRLEQIYLMLGTGL-------DEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVA 82 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 82 (987)
..++|.+..++.+...+.... .....+.++|++|+|||++|+++++.....-. ..+.++ ..+........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~-~~i~i~-~s~~~~~~~~~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEE-SMIRID-MSEYMEKHSTS- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTT-CEEEEE-GGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-ceEEEe-chhcccccccc-
Confidence 568999999988887775311 12236899999999999999999998643322 344444 22222111110
Q ss_pred HHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh--HHHHHHhcCCCC-----------CCCCcEEEE
Q 001979 83 LQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF--DQLQALAGQRDW-----------FGLGSRIII 149 (987)
Q Consensus 83 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~-----------~~~gs~Iii 149 (987)
.......++ +...-+|+||+++.. +....+...+.. .....+||.
T Consensus 568 -------------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 568 -------------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp ----------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred -------------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 001111111 123448999999763 223333322211 123568888
Q ss_pred EeCCcc-------------cccc--cCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 150 TTRDRH-------------LLVR--CDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 150 TtR~~~-------------v~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
||.... +... ...+.++.+++++.++..+++...+
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 887321 1010 1234588899999998888886554
No 236
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.23 E-value=0.0069 Score=63.70 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=83.4
Q ss_pred CCCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc
Q 001979 9 SEKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT 77 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 77 (987)
-+++.|.+...++|.+.+.. +-.-.+-++|+|++|.||||||++++..... ..+.+.. .+....
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~----~~i~i~g-~~l~~~ 83 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL----NFISVKG-PELLNM 83 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC----EEEEEET-TTTCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC----CEEEEEc-HHHHhh
Confidence 46788998888888765421 1011123899999999999999999987532 2333331 111000
Q ss_pred cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHH-hcCCceEEEEeCCCChH-------------HHHHHhcCCCC--C
Q 001979 78 RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIK-LRHKRVLLVIDDVDEFD-------------QLQALAGQRDW--F 141 (987)
Q Consensus 78 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~--~ 141 (987)
. .... .. ....+.+. -...+.++++|+++... ....+...+.. .
T Consensus 84 ~-~~~~-~~------------------~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~ 143 (274)
T 2x8a_A 84 Y-VGES-ER------------------AVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA 143 (274)
T ss_dssp T-THHH-HH------------------HHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS
T ss_pred h-hhHH-HH------------------HHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc
Confidence 0 0010 00 11111111 13456889999986521 11222221111 1
Q ss_pred CCCcEEEEEeCCccccccc-----CcCceEEcCCCCHHHHHHHHHHhh
Q 001979 142 GLGSRIIITTRDRHLLVRC-----DVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 142 ~~gs~IiiTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
....-++.+|..+.++... ..+..+.++..+.++..+++....
T Consensus 144 ~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 144 RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred cCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 2344566677777665432 456788999999999999998765
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.16 E-value=0.00069 Score=78.87 Aligned_cols=51 Identities=27% Similarity=0.401 Sum_probs=36.6
Q ss_pred CccccchhHHHHHHHhcC----CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 11 KLVGMDYRLEQIYLMLGT----GLDEARILGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 11 ~~vGr~~~~~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
+++|.+.-.+.+.+.+.. .......++|+|++|+||||||+.++......|
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 367877777766554321 112456899999999999999999999874433
No 238
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.99 E-value=0.0013 Score=66.79 Aligned_cols=45 Identities=22% Similarity=0.171 Sum_probs=31.2
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 21 QIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 21 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.+.+++..+-....+++|.|++|+||||||+.++. .. -. .++|++
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~~-~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-GK-KVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-CS-EEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-CC-cEEEEE
Confidence 34444532223446899999999999999999987 22 23 577776
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.97 E-value=0.0036 Score=76.38 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=85.7
Q ss_pred CCCccccchhHHHHHHHhcC-----------CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc
Q 001979 9 SEKLVGMDYRLEQIYLMLGT-----------GLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT 77 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 77 (987)
-++++|.+..++++.+++.. +-...+.|.|+|++|+||||||++++......| +.+. ..+....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~----i~v~-~~~l~~~ 277 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLIN-GPEIMSK 277 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE----EEEE-HHHHSSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE----EEEE-chHhhhh
Confidence 36799999999999887742 123346789999999999999999998653222 2332 1111100
Q ss_pred cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHhcCCceEEEEeCCCCh----------------HHHHHHhcCCCCC
Q 001979 78 RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKLRHKRVLLVIDDVDEF----------------DQLQALAGQRDWF 141 (987)
Q Consensus 78 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~ 141 (987)
. ... ........+.........++++|+++.. .++-.+..... .
T Consensus 278 ~-~g~------------------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~ 337 (806)
T 1ypw_A 278 L-AGE------------------SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-Q 337 (806)
T ss_dssp S-TTH------------------HHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-T
T ss_pred h-hhh------------------HHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-c
Confidence 0 000 0001111222333346789999998421 11222222221 1
Q ss_pred CCCcEEEEEeCCcccccc-c----CcCceEEcCCCCHHHHHHHHHHhh
Q 001979 142 GLGSRIIITTRDRHLLVR-C----DVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 142 ~~gs~IiiTtR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
..+..+|.||.....+.. . .....+.+...+.++..+++...+
T Consensus 338 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 234556666665432221 1 233567888889999999987765
No 240
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.96 E-value=0.00036 Score=72.71 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=47.9
Q ss_pred CCCCCCCEEecCCCCCCC--CCCC-CCCCCcccEEeccCCcCCccccCccccCC--CCcEEeCcCCCCCccCCchhhhhh
Q 001979 440 QNMRHLKFIKLSHSVHLT--KTPD-FTGVPKLERLVLDGCTNLSFVHPSIGLLK--RLKVLNMKECIRIKSFPAEIEWAS 514 (987)
Q Consensus 440 ~~l~~L~~L~Ls~~~~~~--~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~--~L~~L~L~~c~~l~~lp~~i~~~~ 514 (987)
.++++|+.|+|++|.+.. .++. +..+++|+.|+|++|..... ..+..++ +|++|+|++|.....+|..-. -.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~-y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQST-YI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHH-HH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchh-HH
Confidence 356667777777766554 2233 34567777777776554332 2233333 777788877765555552111 11
Q ss_pred HHHhhhccccceee
Q 001979 515 LEIVQNAKRLLQLH 528 (987)
Q Consensus 515 l~~~~~l~~L~~L~ 528 (987)
...+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 13456777777775
No 241
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.95 E-value=0.0022 Score=71.25 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=37.1
Q ss_pred CCccccchhHHHHHHHhc----C------------------------CCCCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 10 EKLVGMDYRLEQIYLMLG----T------------------------GLDEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~----~------------------------~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
+.++|.+..++.+...+. . .......+.|+|++|+|||++|+++++...
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 568999988888877662 0 011234688999999999999999999763
No 242
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.89 E-value=0.0032 Score=76.95 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=37.8
Q ss_pred CCccccchhHHHHHHHhcCC-------CCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 10 EKLVGMDYRLEQIYLMLGTG-------LDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..++|.+..++.+...+... ......+.++|++|+|||++|+++++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 46889999888887766421 1123578999999999999999999987
No 243
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.89 E-value=0.00063 Score=70.81 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=18.6
Q ss_pred hccccceeecCCcCCccc---CccccCCCCCCEEeccCCCC
Q 001979 520 NAKRLLQLHLDQTSIEEI---PPSIKFLSRLTVLTLRDCKK 557 (987)
Q Consensus 520 ~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~~~ 557 (987)
++++|+.|+|++|.|..+ |..+..+++|+.|+|++|..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i 208 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 208 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc
Confidence 444555555555555432 23344555555555555443
No 244
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.45 E-value=0.0031 Score=61.67 Aligned_cols=116 Identities=16% Similarity=0.065 Sum_probs=59.8
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHh-cCCCcc---------cccch
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEIL-LDKNVK---------IWDVH 103 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~---------~~~~~ 103 (987)
..|.|++-.|.||||+|-..+-+...+=- .+.++...... ...+-..+.+.+.-.+. ...... .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~-rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGK-NVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTC-CEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 45667777779999999999987655433 46666432211 11122222222200000 000000 00112
Q ss_pred hhHHHHHHHhcCCce-EEEEeCCCC--------hHHHHHHhcCCCCCCCCcEEEEEeCCc
Q 001979 104 KGCHMIRIKLRHKRV-LLVIDDVDE--------FDQLQALAGQRDWFGLGSRIIITTRDR 154 (987)
Q Consensus 104 ~~~~~l~~~L~~k~~-LlVlDdv~~--------~~~~~~l~~~~~~~~~gs~IiiTtR~~ 154 (987)
.....+++.+.+.++ |||||++.. .+++-.+... ......||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCC
Confidence 234455666665555 999999832 2333333332 24578899999986
No 245
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.41 E-value=0.0025 Score=67.35 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=42.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIK 112 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 112 (987)
.+++.|+|++|+||||||.+++.. .-. .+.|++... .+..+. . . .+.+.....+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~-~VlyIs~~~--eE~v~~-----------~-----~-~~le~~l~~i~~~ 179 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGG-KDKYATVRF--GEPLSG-----------Y-----N-TDFNVFVDDIARA 179 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHT-TSCCEEEEB--SCSSTT-----------C-----B-CCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCC-CEEEEEecc--hhhhhh-----------h-----h-cCHHHHHHHHHHH
Confidence 367889999999999999999886 111 345665200 000000 0 0 1233344445555
Q ss_pred hcCCceEEEEeCCCC
Q 001979 113 LRHKRVLLVIDDVDE 127 (987)
Q Consensus 113 L~~k~~LlVlDdv~~ 127 (987)
+...+ +||+|++..
T Consensus 180 l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 180 MLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHCS-EEEEECCTT
T ss_pred HhhCC-EEEEecccc
Confidence 65556 999999865
No 246
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.38 E-value=0.0086 Score=64.11 Aligned_cols=60 Identities=18% Similarity=0.114 Sum_probs=39.1
Q ss_pred CCCccccc----hhHHHHHHHhcCCCC-CeEEEEEEcCCcchHHHHHHHHHHHhh-cCCCcceEEEE
Q 001979 9 SEKLVGMD----YRLEQIYLMLGTGLD-EARILGICGMGGIGKTTLARFVFDNIS-YQFDDGSSFLA 69 (987)
Q Consensus 9 ~~~~vGr~----~~~~~l~~~L~~~~~-~~~~v~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~ 69 (987)
.++|++.+ ..++.+.+++..... ..+.+.|+|++|+|||+||.++++... .+.. .+.++.
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~-~v~~~~ 188 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGV-STTLLH 188 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCC-CEEEEE
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCC-cEEEEE
Confidence 35666543 233344555543211 246788999999999999999999876 5433 455665
No 247
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.24 E-value=0.0087 Score=73.93 Aligned_cols=49 Identities=20% Similarity=0.242 Sum_probs=38.3
Q ss_pred CccccchhHHHHHHHhcCC------C-CCeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 11 KLVGMDYRLEQIYLMLGTG------L-DEARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 11 ~~vGr~~~~~~l~~~L~~~------~-~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
.++|.+..++.+...+... . .....+.|+|++|+|||++|+++++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5789999888887776431 1 12357899999999999999999997643
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.24 E-value=0.031 Score=53.99 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=19.8
Q ss_pred EEEEEEcCCcchHHHHHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
.+|+|.|++|+||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47899999999999999999 54
No 249
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.21 E-value=0.0038 Score=74.90 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=80.1
Q ss_pred CCCccccchhHHHHHHHhcCC-----------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc
Q 001979 9 SEKLVGMDYRLEQIYLMLGTG-----------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT 77 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 77 (987)
-+++.|.+...++|.+.+... ....+-|.++|++|.|||.+|++++..... -|+. ++
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~------~f~~----v~-- 543 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA------NFIS----IK-- 543 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC------EEEE----CC--
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC------ceEE----ec--
Confidence 356778888888887765321 123456889999999999999999997532 2222 11
Q ss_pred cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHH-HhcCCceEEEEeCCCChH----------------HHHHHhcCCCC
Q 001979 78 RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRI-KLRHKRVLLVIDDVDEFD----------------QLQALAGQRDW 140 (987)
Q Consensus 78 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~ 140 (987)
. .+++....+ +.+.....+.+ .-+..+.+|++|++|..- .+.+++..+..
T Consensus 544 --~----~~l~s~~vG-------ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg 610 (806)
T 3cf2_A 544 --G----PELLTMWFG-------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 610 (806)
T ss_dssp --H----HHHHTTTCS-------SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHS
T ss_pred --c----chhhccccc-------hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhC
Confidence 0 112222111 11122222222 234578999999986421 13334333322
Q ss_pred CCC--CcEEEEEeCCcccccc-----cCcCceEEcCCCCHHHHHHHHHHhh
Q 001979 141 FGL--GSRIIITTRDRHLLVR-----CDVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 141 ~~~--gs~IiiTtR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
... +--||-||..+..+.. -..+..+.++..+.++-.++|..+.
T Consensus 611 ~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 611 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 222 2233335554433322 1456788898888888888887665
No 250
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.10 E-value=0.0067 Score=61.93 Aligned_cols=49 Identities=22% Similarity=0.359 Sum_probs=33.1
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-----CCcceEEEE
Q 001979 21 QIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ-----FDDGSSFLA 69 (987)
Q Consensus 21 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~ 69 (987)
.+...+..+-..-.+++|.|++|+|||||++.++-..... .....+|+.
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 3444453222345799999999999999999998754321 232577775
No 251
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.07 E-value=0.011 Score=64.28 Aligned_cols=53 Identities=26% Similarity=0.266 Sum_probs=38.6
Q ss_pred chhHHHHHHHhc-CCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 16 DYRLEQIYLMLG-TGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 16 ~~~~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
..-...|-..|. .+-...+++.|.|++|+||||||..++......-. .++|++
T Consensus 43 ~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg-~VlyId 96 (356)
T 3hr8_A 43 PTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGG-VAAFID 96 (356)
T ss_dssp CCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred cCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEEEe
Confidence 344556666775 33244589999999999999999999987654433 567876
No 252
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.07 E-value=0.0097 Score=60.80 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=27.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
..+++|.|++|+|||||++.++......-. .+.|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~-~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGD-PCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTC-CEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCC-eEEEEE
Confidence 368999999999999999999976543322 455654
No 253
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.03 E-value=0.028 Score=57.88 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=27.4
Q ss_pred HHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 22 IYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 22 l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
+..++....++...|.|+|++|.|||.+|.++++.+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 555665432334568999999999999999999853
No 254
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.00 E-value=0.029 Score=55.91 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=48.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEe---hHhh-hhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHH
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLAN---VREV-SQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIR 110 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~---~~~~-~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 110 (987)
+|.|.|++|+||||.|+.+++++ +...++. .|+. .....+....+..+.. + .....+-....+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~------g~~~istGdllR~~i~~~t~lg~~~~~~~~~---G---~lvpd~iv~~lv~ 69 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK------GFVHISTGDILREAVQKGTPLGKKAKEYMER---G---ELVPDDLIIALIE 69 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH------CCEEEEHHHHHHHHHHHTCHHHHHHHHHHHH---T---CCCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH------CCeEEcHHHHHHHHHHhcChhhhhHHHHHhc---C---CcCCHHHHHHHHH
Confidence 57799999999999999999875 2334431 1111 1111122222222222 1 1112233456777
Q ss_pred HHhcCCceEEEEeCC-CChHHHHHH
Q 001979 111 IKLRHKRVLLVIDDV-DEFDQLQAL 134 (987)
Q Consensus 111 ~~L~~k~~LlVlDdv-~~~~~~~~l 134 (987)
+++..... +|||++ .+..|.+.+
T Consensus 70 ~~l~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 70 EVFPKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp HHCCSSSC-EEEESCCCSHHHHHHH
T ss_pred HhhccCCc-eEecCCchhHHHHHHH
Confidence 78866554 678998 455565554
No 255
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.86 E-value=0.066 Score=58.28 Aligned_cols=156 Identities=9% Similarity=-0.050 Sum_probs=96.6
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhh-cCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNIS-YQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIR 110 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 110 (987)
-.++..++|+.|.||++.|+.+...+. ..|+ ....+. .....++.++...+...
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~-~~~~~~----~~~~~~~~~l~~~~~~~-------------------- 71 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE-EHHTFS----IDPNTDWNAIFSLCQAM-------------------- 71 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC-EEEEEE----CCTTCCHHHHHHHHHHH--------------------
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC-eeEEEE----ecCCCCHHHHHHHhcCc--------------------
Confidence 346888999999999999999998754 3443 111111 11123343333222111
Q ss_pred HHhcCCceEEEEeCCCC---hHHHHHHhcCCCCCCCCcEEEEEeCCc-------ccccc-cCcCceEEcCCCCHHHHHHH
Q 001979 111 IKLRHKRVLLVIDDVDE---FDQLQALAGQRDWFGLGSRIIITTRDR-------HLLVR-CDVEDTYMVEKLNYNEALHL 179 (987)
Q Consensus 111 ~~L~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~IiiTtR~~-------~v~~~-~~~~~~~~l~~L~~~ea~~L 179 (987)
-+.+++-++|+|+++. .+..+++...+....+++.+|++|... .+... ......++..+++.++..+.
T Consensus 72 -plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 72 -SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRW 150 (343)
T ss_dssp -HHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHH
T ss_pred -CCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHH
Confidence 1335566888999865 345566655554445678888776431 22222 23456899999999999988
Q ss_pred HHHhhccCCCCCChHHHHHHHHHHHhCCCchhHHHH
Q 001979 180 FSWKAFRKGHPTDGYFELSHSMVNYADGLPLALEIL 215 (987)
Q Consensus 180 f~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal~~l 215 (987)
+...+-..... -..+.++.+++.++|...++...
T Consensus 151 l~~~~~~~g~~--i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 151 VAARAKQLNLE--LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHHHTTCE--ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHHhchHHHHHHHH
Confidence 87776433221 12356888999999988877653
No 256
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.72 E-value=0.032 Score=60.68 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-----CCcceEEEE
Q 001979 20 EQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ-----FDDGSSFLA 69 (987)
Q Consensus 20 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~ 69 (987)
..|..+|..+-....++.|+|++|+||||||..++...... -...++|++
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 33444554333455899999999999999999999864321 122677886
No 257
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.69 E-value=0.013 Score=60.69 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
...+++|.|++|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 347999999999999999999985
No 258
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.68 E-value=0.0078 Score=66.34 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=37.6
Q ss_pred CccccchhHHHHHHHhc-------------CCCCCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 11 KLVGMDYRLEQIYLMLG-------------TGLDEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 11 ~~vGr~~~~~~l~~~L~-------------~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
.++|.+..++.+...+. ......+.|.|+|++|+|||++|+++++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 47999999999888772 1111335688999999999999999999863
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.67 E-value=0.01 Score=59.50 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=31.1
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 18 RLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 18 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
-+++|.+.+........+|+|.|+.|.|||||++.+...+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34455555543334568999999999999999999998765
No 260
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.65 E-value=0.018 Score=59.13 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-----CCcceEEEE
Q 001979 20 EQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ-----FDDGSSFLA 69 (987)
Q Consensus 20 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~ 69 (987)
..|..+|..+-....+++|.|++|+||||||+.++..+... ....++|+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 34445554322344689999999999999999999853221 122678876
No 261
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.65 E-value=0.02 Score=62.27 Aligned_cols=111 Identities=13% Similarity=0.158 Sum_probs=65.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL 113 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 113 (987)
.+++|.|+.|.||||+.+.+...+.......++.+....+...... .......... .+.......+...|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~---------~~~v~q~~~~-~~~~~~~~~La~aL 193 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK---------KCLVNQREVH-RDTLGFSEALRSAL 193 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS---------SSEEEEEEBT-TTBSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc---------ccceeeeeec-cccCCHHHHHHHHh
Confidence 5999999999999999999988765433312333321111000000 0000000000 11123445788889
Q ss_pred cCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCcccc
Q 001979 114 RHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDRHLL 157 (987)
Q Consensus 114 ~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~~v~ 157 (987)
...+=+|++|+.-+.+.++.+.... ..|..||+||-+...+
T Consensus 194 ~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 9999999999998877766654432 3477788888876433
No 262
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.62 E-value=0.054 Score=54.27 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+.++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999875
No 263
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.46 E-value=0.0077 Score=65.45 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=39.7
Q ss_pred CCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 9 SEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
.+.++|++..++.+...+..+ .-+.|+|++|+|||++|+.+++.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 467899999999988877643 358899999999999999999976443
No 264
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.45 E-value=0.019 Score=57.11 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=34.4
Q ss_pred cchhHHHHHHHhcCC-CCCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 15 MDYRLEQIYLMLGTG-LDEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 15 r~~~~~~l~~~L~~~-~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
|++.++++.+.+... .....+|+|.|+.|.||||+|+.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 556777777766542 24568999999999999999999998764
No 265
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.44 E-value=0.028 Score=56.62 Aligned_cols=112 Identities=15% Similarity=0.022 Sum_probs=60.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcC-CCcccccchhhHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLD-KNVKIWDVHKGCHMIR 110 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-~~~~~~~~~~~~~~l~ 110 (987)
...++.|+|..|+||||+|..++.+...+-. .+..+....+. . +. .++.+++... .........+..+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~-kVli~~~~~d~--r-~~----~~i~srlG~~~~~~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADV-KYLVFKPKIDT--R-SI----RNIQSRTGTSLPSVEVESAPEILNYIM 82 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTC-CEEEEEECCCG--G-GC----SSCCCCCCCSSCCEEESSTHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEEeccCc--h-HH----HHHHHhcCCCccccccCCHHHHHHHHH
Confidence 3478999999999999999999998766544 44444311110 0 10 1222221110 1111122223333333
Q ss_pred HHhcCCc-eEEEEeCCCC--hHHHHHHhcCCCCCCCCcEEEEEeCCc
Q 001979 111 IKLRHKR-VLLVIDDVDE--FDQLQALAGQRDWFGLGSRIIITTRDR 154 (987)
Q Consensus 111 ~~L~~k~-~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTtR~~ 154 (987)
+.+.+.+ -+||+|.+.. .++++.+....+ .|-.||+|-++.
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDK 126 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSB
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEeccc
Confidence 3333344 4999999854 344444433111 278899999854
No 266
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.40 E-value=0.021 Score=62.13 Aligned_cols=54 Identities=26% Similarity=0.313 Sum_probs=38.4
Q ss_pred cchhHHHHHHHhc-CCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 15 MDYRLEQIYLMLG-TGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 15 r~~~~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...-...+..+|. .+-...+++.|.|++|+||||||..++......-. .++|++
T Consensus 42 i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~-~vlyi~ 96 (349)
T 2zr9_A 42 IPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG-IAAFID 96 (349)
T ss_dssp ECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred cccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEE
Confidence 3334555666665 33234578999999999999999999987654434 677876
No 267
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.37 E-value=0.036 Score=60.49 Aligned_cols=53 Identities=28% Similarity=0.295 Sum_probs=37.4
Q ss_pred chhHHHHHHHhc-CCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 16 DYRLEQIYLMLG-TGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 16 ~~~~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
..-...|..+|. .+-...+++.|.|.+|+||||||..++......-. .++|++
T Consensus 56 ~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~-~vlyi~ 109 (366)
T 1xp8_A 56 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG-TCAFID 109 (366)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCC-eEEEEE
Confidence 334555666664 22234468999999999999999999887654434 678886
No 268
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.37 E-value=0.0013 Score=80.30 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=82.5
Q ss_pred CCCccccchhHHHHHHHhcCC-----------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhc
Q 001979 9 SEKLVGMDYRLEQIYLMLGTG-----------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQT 77 (987)
Q Consensus 9 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 77 (987)
-++++|.+...+++.+.+... -...+.+.++|++|+||||||++++......|- .+. ..+....
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i----~v~-~~~l~~~ 550 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI----SIK-GPELLTM 550 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCC----CCC-CSSSTTC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEE----EEe-chHhhhh
Confidence 357789888888888776421 123356889999999999999999998754442 111 0000000
Q ss_pred cCHHHHHHHHHHHHhcCCCcccccchhhHHHHHHHh-cCCceEEEEeCCCCh----------------HHHHHHhcCCCC
Q 001979 78 RGLVALQEQLVSEILLDKNVKIWDVHKGCHMIRIKL-RHKRVLLVIDDVDEF----------------DQLQALAGQRDW 140 (987)
Q Consensus 78 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~ 140 (987)
. . .........+.+.. .....+|++|+++.. ..+..++..+..
T Consensus 551 ~-------------~-------g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~ 610 (806)
T 1ypw_A 551 W-------------F-------GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 610 (806)
T ss_dssp C-------------T-------TTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-
T ss_pred h-------------c-------CccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhc
Confidence 0 0 00011111111111 234568889997531 124555555542
Q ss_pred CC--CCcEEEEEeCCcccccc-c----CcCceEEcCCCCHHHHHHHHHHhh
Q 001979 141 FG--LGSRIIITTRDRHLLVR-C----DVEDTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 141 ~~--~gs~IiiTtR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a 184 (987)
.. .+..||.||.....+.. + ..+..+.++..+.++..+++..+.
T Consensus 611 ~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 611 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp -----CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred ccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 22 23345556654332222 1 233567788888888888887665
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.34 E-value=0.0076 Score=58.70 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
++|.|.|++|+||||+|+.+.+++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 270
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.30 E-value=0.018 Score=62.73 Aligned_cols=53 Identities=28% Similarity=0.320 Sum_probs=37.5
Q ss_pred chhHHHHHHHhc-CCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 16 DYRLEQIYLMLG-TGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 16 ~~~~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
..-...|..+|. .+-...+++.|.|.+|+||||||..++......-. .++|++
T Consensus 45 ~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~-~vlyid 98 (356)
T 1u94_A 45 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFID 98 (356)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred cCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEe
Confidence 333455555664 22234478999999999999999999987655444 678886
No 271
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.14 E-value=0.033 Score=60.12 Aligned_cols=50 Identities=18% Similarity=0.275 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC--C---CcceEEEE
Q 001979 20 EQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ--F---DDGSSFLA 69 (987)
Q Consensus 20 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--f---~~~~~~~~ 69 (987)
..+..+|..+-....++.|+|++|+||||+|..++...... + ...++|++
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 33444443222334689999999999999999999865332 1 22678886
No 272
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.12 E-value=0.035 Score=57.63 Aligned_cols=109 Identities=15% Similarity=0.179 Sum_probs=61.9
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehH--hhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVR--EVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMI 109 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~--~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l 109 (987)
...+++|+|+.|.||||+++.+...+...+. +.+++.... ...+.. . .+........ +.......+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~-G~I~~~g~~i~~~~~~~-~---------~~v~q~~~gl-~~~~l~~~l 91 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKS-YHIITIEDPIEYVFKHK-K---------SIVNQREVGE-DTKSFADAL 91 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCC-CEEEEEESSCCSCCCCS-S---------SEEEEEEBTT-TBSCHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCC-CEEEEcCCcceeecCCc-c---------eeeeHHHhCC-CHHHHHHHH
Confidence 4479999999999999999999886654334 444433110 000000 0 0000000000 112234566
Q ss_pred HHHhcCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCcc
Q 001979 110 RIKLRHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDRH 155 (987)
Q Consensus 110 ~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~~ 155 (987)
.+.+..++=+|++|+.-+.+....+.... ..|..|++||-+..
T Consensus 92 a~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 92 RAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp HHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred HHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 77777677789999997665554443321 34777888888754
No 273
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.11 E-value=0.011 Score=57.19 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=22.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
.+|+|.|+.|+||||+|+.+..++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998763
No 274
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.09 E-value=0.04 Score=57.93 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=34.2
Q ss_pred HHHHHHhc----CCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC-CcceEEEE
Q 001979 20 EQIYLMLG----TGLDEARILGICGMGGIGKTTLARFVFDNISYQF-DDGSSFLA 69 (987)
Q Consensus 20 ~~l~~~L~----~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~ 69 (987)
.+|-..|. .+-..- ++.|.|++|+||||||.+++.....++ ...++|++
T Consensus 12 ~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp HHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 34445565 322333 789999999999999999988765543 32678876
No 275
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.08 E-value=0.023 Score=60.07 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=26.2
Q ss_pred CCCCeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 29 GLDEARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 29 ~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
......+|+|.|+.|+||||||+.+...+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3456789999999999999999999887653
No 276
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.06 E-value=0.054 Score=60.44 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=27.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEE
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFL 68 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 68 (987)
+.++|+|.+|+||||||..+......++.+.+++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence 46889999999999999999987766555345554
No 277
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.04 E-value=0.035 Score=59.90 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=25.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCC
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFD 62 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 62 (987)
..+.++|+|++|.|||||++.+.+.+.....
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~ 203 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 203 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCT
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCC
Confidence 3468999999999999999999987655444
No 278
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.94 E-value=0.013 Score=58.23 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=23.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.++|+|.|++|+||||+|+.++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 279
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.89 E-value=0.095 Score=55.65 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=35.2
Q ss_pred hHHHHHHHhcCC------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 18 RLEQIYLMLGTG------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 18 ~~~~l~~~L~~~------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
-.++|.+.+... ....++|+|+|++|+||||++..++..++..-. .+.++.
T Consensus 83 ~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~-kV~lv~ 139 (306)
T 1vma_A 83 LKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK-SVVLAA 139 (306)
T ss_dssp HHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred HHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC-EEEEEc
Confidence 344555666432 134579999999999999999999987765432 344443
No 280
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.86 E-value=0.043 Score=59.19 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 20 EQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 20 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..+..+|..+-....++.|+|++|+||||+|..++...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444553222345799999999999999999998763
No 281
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.81 E-value=0.014 Score=57.13 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=22.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
+.|+|.|+.|+||||+|+.+++++
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999876
No 282
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.79 E-value=0.074 Score=59.17 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=28.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...+|.|+|.+|+||||++..++..++.+-. .+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~-kVllv~ 135 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGY-KVGVVC 135 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCC-eEEEEe
Confidence 3689999999999999999999987765533 344443
No 283
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.78 E-value=0.14 Score=54.82 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=42.1
Q ss_pred hhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHH
Q 001979 17 YRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSE 90 (987)
Q Consensus 17 ~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 90 (987)
.-+..|..++ .+-....++.|.|.+|+||||+|..++.....+-. .++|++. .-...++..++...
T Consensus 53 TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~-~vl~~sl------E~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 53 SGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDD-VVNLHSL------EMGKKENIKRLIVT 118 (315)
T ss_dssp CSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTC-EEEEEES------SSCHHHHHHHHHHH
T ss_pred CChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-eEEEEEC------CCCHHHHHHHHHHH
Confidence 3344444444 22234568999999999999999999987654434 6777651 23445555555544
No 284
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.77 E-value=0.017 Score=61.98 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=35.5
Q ss_pred cccchhHHHHHHHhcC--CCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 13 VGMDYRLEQIYLMLGT--GLDEARILGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 13 vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
|+.+.-++++.+.+.. ..+....|+|+|++|+||||+|+.++..+...|
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4555566666666532 234566799999999999999999998765444
No 285
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.73 E-value=0.023 Score=55.74 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 19 LEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 19 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
+..++.++..- ++...+.|+|++|+||||+|.++++.+.
T Consensus 45 ~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55566666532 2334689999999999999999999874
No 286
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.71 E-value=0.032 Score=55.83 Aligned_cols=26 Identities=19% Similarity=0.024 Sum_probs=22.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
.|.+.|.||+||||+|..++.....+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47789999999999999999876554
No 287
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.71 E-value=0.013 Score=57.35 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=24.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCC
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFD 62 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 62 (987)
|.|+|.||+|+|||||++.+..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 56889999999999999999987655554
No 288
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.70 E-value=0.015 Score=63.64 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=35.8
Q ss_pred CCCCCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 7 SASEKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 7 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
...+.++|.+...+.+...+... ...-|.|+|++|+|||++|+++++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34467999988666554433221 122488999999999999999999764
No 289
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.61 E-value=0.032 Score=55.50 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
...+|+|.|+.|.||||+|+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 447999999999999999999999875
No 290
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.50 E-value=0.016 Score=66.11 Aligned_cols=45 Identities=20% Similarity=0.148 Sum_probs=38.1
Q ss_pred CCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 10 EKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
+.+||++..++.+...+..+ .-|.|+|++|+|||+||+++++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 67899999999888777643 3688999999999999999998763
No 291
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.46 E-value=0.034 Score=54.70 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
++|+|.|++|+||||+|+.+.+++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998764
No 292
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.44 E-value=0.021 Score=54.98 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
..++|+|.|+.|+||||+|+.+++++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998763
No 293
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.37 E-value=0.022 Score=55.36 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 294
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.35 E-value=0.021 Score=56.21 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
...+++|.|++|+||||+++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999999875
No 295
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.28 E-value=0.024 Score=58.69 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=22.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
++|+|.|++|+||||+|+.++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999875
No 296
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.28 E-value=0.027 Score=55.45 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..+|.|.|++|+||||+|+.+.+++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 297
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.24 E-value=0.017 Score=55.84 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=22.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+|+|.|+.|+||||+|+.++..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999875
No 298
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.24 E-value=0.063 Score=59.34 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=31.6
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC-----CCcceEEEE
Q 001979 21 QIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ-----FDDGSSFLA 69 (987)
Q Consensus 21 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~ 69 (987)
.+-.+|..+-..-.++.|.|++|+|||||++.++-..... -...++|++
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 3444453322344799999999999999999876432211 122577876
No 299
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.22 E-value=0.03 Score=57.67 Aligned_cols=41 Identities=15% Similarity=-0.035 Sum_probs=28.9
Q ss_pred hhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 17 YRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 17 ~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..+.++.+...........|+|.|++|+||||+|+.+.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444444332222345789999999999999999999875
No 300
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.20 E-value=0.043 Score=53.72 Aligned_cols=28 Identities=29% Similarity=0.403 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
...+|+|.|++|+||||+|+.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999998754
No 301
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.18 E-value=0.019 Score=55.97 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+.|.|.|++|+||||+|+.+++++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999875
No 302
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.15 E-value=0.025 Score=55.12 Aligned_cols=26 Identities=15% Similarity=0.370 Sum_probs=23.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
.++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998654
No 303
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.14 E-value=0.11 Score=58.61 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=42.5
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHH
Q 001979 18 RLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSE 90 (987)
Q Consensus 18 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 90 (987)
-+..|..++ .+-....++.|.|.+|+||||+|..++..+..+....++|++. .-...++..+++..
T Consensus 186 G~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl------E~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 186 GFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL------EMPAAQLTLRMMCS 251 (444)
T ss_dssp SCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES------SSCHHHHHHHHHHH
T ss_pred CCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC------CCCHHHHHHHHHHH
Confidence 344455555 3333456899999999999999999998765432325677652 23345666666554
No 304
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.14 E-value=0.041 Score=52.62 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
..++++|.|+.|+||||++..+...++.+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 45789999999999999999999987654
No 305
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.14 E-value=0.04 Score=61.43 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=38.1
Q ss_pred CCccccchhHHHHHHHhcC---------C---CCCeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 10 EKLVGMDYRLEQIYLMLGT---------G---LDEARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~---------~---~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
+.++|.+...+.+...+.. + ....+-|.++|++|+||||+|++++..+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 5789999888888665521 0 0123568899999999999999999986443
No 306
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.08 E-value=0.13 Score=57.13 Aligned_cols=37 Identities=24% Similarity=0.118 Sum_probs=28.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
..++|+++|++|+||||++..++..++.+-. .+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~-kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGY-KVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEe
Confidence 3689999999999999999999987765433 444443
No 307
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.08 E-value=0.026 Score=56.51 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
..++|+|.|+.|+||||+++.+......
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3468999999999999999999987643
No 308
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.07 E-value=0.097 Score=55.39 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=28.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhc-CCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISY-QFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~ 69 (987)
..++++|+|++|+||||++..++..++. +-. .+.++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEe
Confidence 3579999999999999999999987753 222 345544
No 309
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.05 E-value=0.026 Score=55.46 Aligned_cols=26 Identities=27% Similarity=0.617 Sum_probs=23.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
.+|+|.|++|+||||+|+.+.+++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999998753
No 310
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.00 E-value=0.022 Score=56.69 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=22.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..+|+|.|+.|+||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 311
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.99 E-value=0.15 Score=51.36 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.8
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..++|.|++|+||||+|+.+.+++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 312
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.97 E-value=0.049 Score=58.18 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=30.7
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
++.++|+|.|-|||||||.|..++..+...-. .+.-++
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk-kVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCC-eEEEEe
Confidence 46799999999999999999999887765544 566665
No 313
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.92 E-value=0.026 Score=54.66 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.3
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.|+|.|++|+||||+|+.++.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999876
No 314
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.91 E-value=0.091 Score=57.67 Aligned_cols=109 Identities=15% Similarity=0.181 Sum_probs=61.6
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceE-EEEehHhhhhccCHHHHHHHHHHHHhcCCCcccccchhhHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSS-FLANVREVSQTRGLVALQEQLVSEILLDKNVKIWDVHKGCHMIR 110 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 110 (987)
...+++|+|+.|.||||+++.+...+..... +.+ ++..-.+ .... .. . .+..+.... .+.......++
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~-g~I~~~e~~~e----~~~~---~~-~-~~v~Q~~~g-~~~~~~~~~l~ 203 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKS-YHIITIEDPIE----YVFK---HK-K-SIVNQREVG-EDTKSFADALR 203 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSC-CEEEEEESSCC----SCCC---CS-S-SEEEEEEBT-TTBSCSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCC-cEEEEecccHh----hhhc---cC-c-eEEEeeecC-CCHHHHHHHHH
Confidence 3478999999999999999999987654323 333 3331000 0000 00 0 000000000 01223355778
Q ss_pred HHhcCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCc
Q 001979 111 IKLRHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDR 154 (987)
Q Consensus 111 ~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~ 154 (987)
..+...+=+|++|++-+.+.+....... ..|..|+.|+-+.
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~ 244 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTN 244 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCC
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcc
Confidence 8888888899999997766655443322 3466677776654
No 315
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.90 E-value=0.03 Score=55.62 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
...+|+|.|+.|.||||+|+.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999999876
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.90 E-value=0.027 Score=56.03 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
.|+|.|+.|+||||+|+.+++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 317
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.88 E-value=0.023 Score=55.78 Aligned_cols=28 Identities=36% Similarity=0.546 Sum_probs=24.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
++++|.|+.|+|||||++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5789999999999999999998765444
No 318
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.88 E-value=0.035 Score=53.74 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
...+|+|.|+.|.||||+|+.+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 34789999999999999999998864
No 319
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.85 E-value=0.18 Score=54.13 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=45.7
Q ss_pred ccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHH
Q 001979 12 LVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSE 90 (987)
Q Consensus 12 ~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 90 (987)
+.|...-...|.+++. +-....++.|.|.+|+||||+|..++..+..+-. .+.|++ -.-...++..+++..
T Consensus 26 ~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-~Vl~fS------lEms~~ql~~Rlls~ 96 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-GVAVFS------LEMSAEQLALRALSD 96 (338)
T ss_dssp CCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-EEEEEE------SSSCHHHHHHHHHHH
T ss_pred cCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-eEEEEe------CCCCHHHHHHHHHHH
Confidence 4454444555555553 2234468999999999999999999987654323 566664 123445666666554
No 320
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.84 E-value=0.067 Score=58.21 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=33.5
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC--C---CcceEEEE
Q 001979 21 QIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ--F---DDGSSFLA 69 (987)
Q Consensus 21 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~--f---~~~~~~~~ 69 (987)
.+..+|..+-...+++.|+|++|+|||||++.++..+... . ...++|++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~ 172 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 172 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe
Confidence 3444554332455899999999999999999999875322 1 21347876
No 321
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.83 E-value=0.13 Score=58.22 Aligned_cols=38 Identities=13% Similarity=0.310 Sum_probs=28.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...++.|.|.+|+||||||..++..+.......++|++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44689999999999999999999876542221466665
No 322
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.83 E-value=0.032 Score=54.93 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
..++|+|+|+.|+|||||++.+......
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCc
Confidence 4578999999999999999999987543
No 323
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.81 E-value=0.055 Score=58.34 Aligned_cols=102 Identities=12% Similarity=0.145 Sum_probs=59.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcccc--cchhhHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVKIW--DVHKGCHMIRI 111 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~--~~~~~~~~l~~ 111 (987)
.+++|+|+.|.|||||++.+...+.. -. +.+.+....+.... . ........ ........+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~-g~i~i~~~~e~~~~-~-------------~~~~i~~~~ggg~~~r~~la~ 235 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EE-RIISIEDTEEIVFK-H-------------HKNYTQLFFGGNITSADCLKS 235 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TS-CEEEEESSCCCCCS-S-------------CSSEEEEECBTTBCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CC-cEEEECCeeccccc-c-------------chhEEEEEeCCChhHHHHHHH
Confidence 58999999999999999999876543 23 66666532211100 0 00000000 12334456777
Q ss_pred HhcCCceEEEEeCCCChHHHHHHhcCCCCCCCCcEEEEEeCCc
Q 001979 112 KLRHKRVLLVIDDVDEFDQLQALAGQRDWFGLGSRIIITTRDR 154 (987)
Q Consensus 112 ~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IiiTtR~~ 154 (987)
.|..++=+|++|+....+.++.+... . ..+..+|+||...
T Consensus 236 aL~~~p~ilildE~~~~e~~~~l~~~-~--~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 236 CLRMRPDRIILGELRSSEAYDFYNVL-C--SGHKGTLTTLHAG 275 (330)
T ss_dssp HTTSCCSEEEECCCCSTHHHHHHHHH-H--TTCCCEEEEEECS
T ss_pred HhhhCCCEEEEcCCChHHHHHHHHHH-h--cCCCEEEEEEccc
Confidence 78888889999999875555544322 1 1122356666544
No 324
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.79 E-value=0.026 Score=55.25 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+|+|.|++|+||||+|+.+..++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999875
No 325
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.76 E-value=0.037 Score=54.51 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=22.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+|+|.|++|+||||+|+.+.+++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 679999999999999999998875
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.73 E-value=0.03 Score=55.29 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..+|+|.|++|+||||+|+.+++++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999875
No 327
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.72 E-value=0.21 Score=57.50 Aligned_cols=53 Identities=9% Similarity=0.067 Sum_probs=37.5
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSE 90 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 90 (987)
...++.|.|.+|+||||+|..++..+..+....++|++. .....++..+++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~------E~s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML------EESVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES------SSCHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec------cCCHHHHHHHHHHH
Confidence 346899999999999999999998876553325777751 22345666666554
No 328
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.71 E-value=0.04 Score=54.81 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
....+|+|.|+.|+||||+|+.+++++
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999999864
No 329
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.71 E-value=0.25 Score=52.14 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=28.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.++++|+|.+|+||||++..++..+..+-. .+.+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~-~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF-KVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTC-CEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEe
Confidence 579999999999999999999987765433 455554
No 330
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.68 E-value=0.11 Score=56.05 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=28.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEeh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANV 71 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~ 71 (987)
..+.++|.|.+|+|||+|+..+++.+.....+..+.+..+
T Consensus 174 rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lI 213 (427)
T 3l0o_A 174 KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLI 213 (427)
T ss_dssp TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEe
Confidence 3467899999999999999999997655444234333333
No 331
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.66 E-value=0.037 Score=54.37 Aligned_cols=31 Identities=26% Similarity=0.534 Sum_probs=24.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.+++|.|+.|.||||+++.++.. .. +.++++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~----~~-g~~~i~ 33 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ----LD-NSAYIE 33 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH----SS-SEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhcc----cC-CeEEEc
Confidence 57899999999999999999863 23 445554
No 332
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.65 E-value=0.037 Score=54.12 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
....|+|.|+.|+||||+|+.+.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999986
No 333
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.65 E-value=0.025 Score=55.24 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=18.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+|+|.|++|+||||+|+.+.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998875
No 334
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.60 E-value=0.044 Score=53.57 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
...|+|.|++|+||||+|+.+.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999875
No 335
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.56 E-value=0.044 Score=54.87 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=23.6
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
.+|+|.|++|+||||+|+.+.+++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 68999999999999999999998754
No 336
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.55 E-value=0.041 Score=52.76 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
.|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998763
No 337
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.54 E-value=0.04 Score=53.52 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998654
No 338
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.54 E-value=0.094 Score=59.58 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=23.9
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
+.+.|.|.+|.||||++..+...+....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 3889999999999999999998765443
No 339
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.53 E-value=0.031 Score=55.73 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
..++|+|.|++|+||||+++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999998764
No 340
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.51 E-value=0.062 Score=56.71 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998865
No 341
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.51 E-value=0.029 Score=54.11 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.9
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
++|+|.|+.|+||||+|+.+.+++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999875
No 342
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.46 E-value=0.048 Score=54.15 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
...+|+|.|++|+||||+|+.+.+++
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999876
No 343
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.46 E-value=0.039 Score=54.95 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=22.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+++|.|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 689999999999999999998764
No 344
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.44 E-value=0.038 Score=54.72 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=22.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+|+|.|++|+||||+|+.+.+++
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 345
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.42 E-value=0.14 Score=46.74 Aligned_cols=55 Identities=25% Similarity=0.389 Sum_probs=42.1
Q ss_pred cEEecCCCCCCCCCCccccCCCCCCCEEeCCCCCCcccchh-hhccCCCcEEecCCCc
Q 001979 664 SRLDLGDCNLQEGAIPNDLGSLSALTNLTLSRNNFFSLPAS-INQLSRLETLNIDYCN 720 (987)
Q Consensus 664 ~~L~Ls~~~l~~~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 720 (987)
..++.++++++...+|..+ .++|+.|+|++|+|+.+|.. +..+++|+.|+|++|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4677888887622477543 24799999999999998864 5788999999999876
No 346
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.42 E-value=0.045 Score=56.67 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
....+|+|.|+.|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3557899999999999999999998754
No 347
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.40 E-value=0.048 Score=54.62 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
...+|+|.|+.|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 447899999999999999999998654
No 348
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.35 E-value=0.12 Score=50.96 Aligned_cols=23 Identities=35% Similarity=0.310 Sum_probs=19.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
.+..|.|.+|.|||++|......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36789999999999999886554
No 349
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.35 E-value=0.11 Score=56.78 Aligned_cols=40 Identities=28% Similarity=0.333 Sum_probs=29.6
Q ss_pred HHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 21 QIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 21 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
++.+.+....+...+|+|+|.+|+||||++..+...+...
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3333443333567899999999999999999998876544
No 350
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.32 E-value=0.045 Score=54.95 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=24.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
..+|+|.|+.|+||||+|+.+.+++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999987544
No 351
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.32 E-value=0.1 Score=55.94 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
...+++|+|+.|+||||+++.++..++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999876543
No 352
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.32 E-value=0.071 Score=56.87 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=24.8
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
....+|+|.|+.|+||||+|+.+...+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45679999999999999999999876653
No 353
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.31 E-value=0.039 Score=55.76 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=22.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
...|+|.|++|+||||+|+.+++++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999875
No 354
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.30 E-value=0.047 Score=53.64 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..+|+|.|++|+||||+|+.+.+++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 355
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.30 E-value=0.043 Score=56.54 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..+|+|.|+.|+||||+++.+++++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 356
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.29 E-value=0.045 Score=55.56 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=22.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+|+|.|+.|.||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998865
No 357
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.29 E-value=0.11 Score=55.53 Aligned_cols=37 Identities=22% Similarity=0.121 Sum_probs=29.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
..++|+|+|++|+||||++..++..++..-. .+.+++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~-kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGY-KVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEe
Confidence 4679999999999999999999987765433 445443
No 358
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.26 E-value=0.048 Score=54.16 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
+...+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999885
No 359
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.24 E-value=0.068 Score=69.97 Aligned_cols=48 Identities=31% Similarity=0.404 Sum_probs=35.4
Q ss_pred HHHHHhc-CCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 21 QIYLMLG-TGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 21 ~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.+..+|. .+-...+.|.|+|++|+|||+||.+++.....+=. .+.|++
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~-~v~Fi~ 1462 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFID 1462 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-cEEEEE
Confidence 3555554 22234578999999999999999999987665544 677776
No 360
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.23 E-value=0.044 Score=54.59 Aligned_cols=25 Identities=24% Similarity=0.562 Sum_probs=22.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..+|+|.|+.|+||||+|+.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998865
No 361
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.22 E-value=0.038 Score=53.31 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=19.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVF 54 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~ 54 (987)
...+++|.|+.|.|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34789999999999999999643
No 362
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.19 E-value=0.051 Score=56.56 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=23.2
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
..+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 363
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.15 E-value=0.049 Score=54.38 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
....+|+|.|++|.||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999864
No 364
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.14 E-value=0.18 Score=56.04 Aligned_cols=55 Identities=27% Similarity=0.374 Sum_probs=35.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVS 89 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 89 (987)
+-+.++|.|.+|+|||+|+..+.+.+.....+.++|+- +.+- .....++.+++..
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~-iGER--~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGER--TREGNDLYHEMIE 206 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE-ESCC--HHHHHHHHHHHHH
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE-CCCc--chHHHHHHHHhhh
Confidence 34679999999999999999999987544332555543 2221 2334455555544
No 365
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.11 E-value=0.069 Score=52.35 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=7.7
Q ss_pred hccccceeecCCcCCc
Q 001979 520 NAKRLLQLHLDQTSIE 535 (987)
Q Consensus 520 ~l~~L~~L~L~~~~i~ 535 (987)
.-+.|+.|+|+.|.|.
T Consensus 96 ~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLT 111 (197)
T ss_dssp HCSSCCEEECCSSBCC
T ss_pred cCCccCeEecCCCcCC
Confidence 3344555555555444
No 366
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.10 E-value=0.069 Score=54.85 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=28.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...+++|.|++|+||||||..++......-. .++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~-~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE-PGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEEEE
Confidence 3468999999999999999998876544433 677775
No 367
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.09 E-value=0.048 Score=54.59 Aligned_cols=28 Identities=14% Similarity=0.380 Sum_probs=24.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
..+|+|.|+.|+||||+|+.+.+++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999976543
No 368
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.07 E-value=0.14 Score=46.63 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=28.7
Q ss_pred eEEecCCCCC--CCCCCCCCCCceEEEcCCCCcccccc-ccCCCCCCCEEecCCCC
Q 001979 402 LLKWHGYPLR--SLPSNFQPERLFKLNICYSLVEQLWQ-GVQNMRHLKFIKLSHSV 454 (987)
Q Consensus 402 ~L~~~~~~l~--~lp~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~Ls~~~ 454 (987)
.++.++..++ .+|..+ +.+|++|+|++|.|+.++. .+..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4455555555 666543 3346666666666666644 23455566666665553
No 369
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.05 E-value=0.046 Score=54.41 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
.+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 370
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.03 E-value=0.069 Score=52.35 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=16.2
Q ss_pred CceEEEcCCC-Ccc-----ccccccCCCCCCCEEecCCCCC
Q 001979 421 RLFKLNICYS-LVE-----QLWQGVQNMRHLKFIKLSHSVH 455 (987)
Q Consensus 421 ~L~~L~l~~~-~i~-----~l~~~~~~l~~L~~L~Ls~~~~ 455 (987)
.|++|+|+++ .|. .+.++++.-..|+.|+|++|.+
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i 82 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI 82 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC
Confidence 4445555543 333 2334444445555555555543
No 371
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.00 E-value=0.24 Score=55.60 Aligned_cols=49 Identities=20% Similarity=0.162 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 19 LEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 19 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
+..|-+++. +-....++.|.|.+|+||||+|..++..+..+-. .++|++
T Consensus 184 ~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~-~vl~fS 232 (444)
T 3bgw_A 184 FTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDD-VVNLHS 232 (444)
T ss_dssp CHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTC-EEEEEC
T ss_pred cHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCC-EEEEEE
Confidence 344444442 2234568999999999999999999987655422 566664
No 372
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.98 E-value=0.054 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.614 Sum_probs=22.1
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
+|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999774
No 373
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.96 E-value=0.063 Score=52.12 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
...+|+|.|+.|.||||+|+.+...+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3468999999999999999999987643
No 374
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.93 E-value=0.05 Score=64.25 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=40.1
Q ss_pred CCccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 10 EKLVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 10 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
+.++|.+..++.+...+..+ ..++|+|++|+||||||+.++..+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 56899999998888888654 4789999999999999999999765443
No 375
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.92 E-value=0.081 Score=50.11 Aligned_cols=27 Identities=37% Similarity=0.470 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
....+++|.|+.|.|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344799999999999999999999876
No 376
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.85 E-value=0.037 Score=55.55 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
+|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 377
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.80 E-value=0.14 Score=54.34 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
...+++|+|+.|+||||+++.++..++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999987654
No 378
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.79 E-value=0.056 Score=53.91 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=20.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 379
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.78 E-value=0.29 Score=48.29 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=26.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEE
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISYQFDDGSSFL 68 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 68 (987)
.|+|-|.-|+||||.++.+++.++.+-. .+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~-~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGK-KVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEE
Confidence 4789999999999999999998876644 34444
No 380
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.78 E-value=0.044 Score=54.34 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=22.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
++++|+|+.|+|||||++.+...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987654
No 381
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.78 E-value=0.082 Score=54.68 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
....+|.|.|++|.||||+|+.+...+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3457899999999999999999998753
No 382
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.74 E-value=0.31 Score=53.47 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
...+++|.|+.|.|||||.+.++-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 346899999999999999999975
No 383
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.73 E-value=0.067 Score=52.61 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.-.+|+|.|+.|.||||+|+.+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999999864
No 384
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.71 E-value=0.052 Score=55.13 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
...|+|.|++|+||||+|+.+++++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999865
No 385
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.70 E-value=0.071 Score=54.87 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
....+|+|.|+.|.||||+|+.+...+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998865
No 386
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.69 E-value=0.063 Score=53.99 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.|+|.|++|+||||+|+.+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 387
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.69 E-value=0.059 Score=55.72 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=23.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..+|+|.|+.|.||||+|+.+++++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999876
No 388
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.67 E-value=0.19 Score=58.13 Aligned_cols=49 Identities=24% Similarity=0.288 Sum_probs=32.6
Q ss_pred HHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 20 EQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 20 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
..+...|..+-..-.+++|.|++|+|||||++.++......-. .++++.
T Consensus 268 ~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~-~vi~~~ 316 (525)
T 1tf7_A 268 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE-RAILFA 316 (525)
T ss_dssp HHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-CEEEEE
T ss_pred HHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCC-CEEEEE
Confidence 3444555432234468999999999999999999986654322 344543
No 389
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.64 E-value=0.072 Score=56.87 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=25.1
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
....+|+|.|+.|.||||||+.+...+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 45689999999999999999999886643
No 390
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.62 E-value=0.047 Score=55.25 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=22.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
...|+|.|++|+||||+|+.+++++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998763
No 391
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.62 E-value=0.1 Score=55.49 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
...+|+|+|++|+||||+++.++..++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45799999999999999999999876543
No 392
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.57 E-value=0.058 Score=53.90 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=22.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..+++|.|+.|+|||||++.+....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 393
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.57 E-value=0.11 Score=52.39 Aligned_cols=47 Identities=23% Similarity=0.182 Sum_probs=34.4
Q ss_pred ccccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 12 LVGMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 12 ~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
+-+.+..++++...+.. ...++|+|+|.+|+|||||+..+.......
T Consensus 11 l~~~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 11 LAENKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp CHHHHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HhhcHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 33445556666665542 356899999999999999999999876544
No 394
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.56 E-value=0.068 Score=52.73 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.5
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 35 ILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
.|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999998744
No 395
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.46 E-value=0.083 Score=52.90 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
...+|+|.|+.|.||||+|+.+...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 347899999999999999999998764
No 396
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.46 E-value=0.095 Score=52.98 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=29.8
Q ss_pred hHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 18 RLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 18 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
..+++...+.. .....|+|+|.+|+|||||+..+.......
T Consensus 25 ~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 25 LADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 34445554432 356889999999999999999999875443
No 397
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.45 E-value=0.065 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 398
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.44 E-value=0.071 Score=57.08 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=22.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+|+|.|+.|+||||||+.++.++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999875
No 399
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.39 E-value=0.28 Score=54.42 Aligned_cols=37 Identities=22% Similarity=0.149 Sum_probs=28.6
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
..++++|+|++|+||||++..++..++.+-. .+..++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~-~Vllvd 133 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR-RPLLVA 133 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEee
Confidence 3578999999999999999999988765532 444443
No 400
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.35 E-value=0.052 Score=55.82 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=22.4
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+|+|.|+.|.||||+++.++..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999876
No 401
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.35 E-value=0.38 Score=53.77 Aligned_cols=55 Identities=29% Similarity=0.337 Sum_probs=36.4
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVS 89 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 89 (987)
+-+.++|.|.+|+|||+|+..+.+.+.....+.++|+- +.+ +.....++.+++..
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGE--R~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGE--RTREGNDLYMEMKE 218 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESC--CSHHHHHHHHHHHH
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-ccc--CcHHHHHHHHhhhc
Confidence 34678999999999999999999987544443666653 222 12334455555543
No 402
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.33 E-value=0.062 Score=54.14 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.9
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..|+|.|++|+||||+|+.+++++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 403
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.30 E-value=0.055 Score=54.59 Aligned_cols=26 Identities=35% Similarity=0.614 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998865
No 404
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.26 E-value=0.19 Score=56.18 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=36.3
Q ss_pred hHHHHHHHhcCC-------CCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 18 RLEQIYLMLGTG-------LDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 18 ~~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
-.+++.+++... ....++|.|+|.+|+||||+|..++..++.+....+..++
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 344566666532 1346899999999999999999999987765221455554
No 405
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.23 E-value=0.064 Score=51.61 Aligned_cols=36 Identities=25% Similarity=0.202 Sum_probs=26.7
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcC-CCcceEEEE
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQ-FDDGSSFLA 69 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~ 69 (987)
++++|+|..|.|||||++.+...+... +..+.+.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 589999999999999999999876543 322444443
No 406
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.16 E-value=0.19 Score=54.52 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
...+++|+|+.|+||||+++.++..++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 45799999999999999999999876543
No 407
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.15 E-value=0.067 Score=53.14 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=22.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..|+|.|+.|+||||+|+.+.+++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 408
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.13 E-value=0.12 Score=55.07 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...++|+|+|-||+||||+|..++..+..+-. .+..++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~-~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCC-eEEEEe
Confidence 35689999999999999999999998766533 566665
No 409
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.13 E-value=0.07 Score=53.74 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
...+++|.|+.|+|||||++.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999998764
No 410
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.13 E-value=0.083 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=21.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
+|+|.|+.|+||||+|+.+...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999876
No 411
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.10 E-value=0.076 Score=53.79 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=22.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+|+|.|++|.||||+|+.++.++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 412
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.00 E-value=0.4 Score=47.56 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=25.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCC
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFD 62 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~ 62 (987)
+.|+|-|..|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999999865444
No 413
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.95 E-value=0.086 Score=50.82 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=24.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
.++++|.|+.|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987654
No 414
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.92 E-value=0.23 Score=57.84 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=24.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCC
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQF 61 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f 61 (987)
+++.|.|.+|.||||++..+...+...-
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g 232 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG 232 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 5888999999999999999998765543
No 415
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.91 E-value=0.086 Score=56.07 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=22.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
++|+|+|+.|+||||||+.++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999875
No 416
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.91 E-value=0.086 Score=55.45 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=22.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
++|+|.|+.|+||||||..++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 689999999999999999999864
No 417
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.79 E-value=0.087 Score=53.72 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=22.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
...|+|.|+.|+||||+|+.+++++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999876
No 418
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.78 E-value=1.8 Score=43.80 Aligned_cols=39 Identities=26% Similarity=0.195 Sum_probs=28.3
Q ss_pred ccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 14 GMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 14 Gr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
=++.+.+.+..++.. . . +.|+|+.|.|||.+|..++...
T Consensus 94 l~~~Q~~ai~~~~~~--~--~-~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 94 LRDYQEKALERWLVD--K--R-GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCHHHHHHHHHHTTT--S--E-EEEEESSSTTHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHhC--C--C-EEEEeCCCCCHHHHHHHHHHHc
Confidence 355566666666542 1 2 7789999999999999888764
No 419
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.77 E-value=0.083 Score=51.78 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.6
Q ss_pred EEEEEcCCcchHHHHHHHHHHHhh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
+++|+|+.|+|||||++.++..++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999998654
No 420
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.76 E-value=0.1 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 421
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.75 E-value=0.11 Score=56.71 Aligned_cols=27 Identities=30% Similarity=0.198 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
...++++|+|++|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445799999999999999999999754
No 422
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.71 E-value=0.094 Score=55.15 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 423
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.71 E-value=0.095 Score=53.00 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=21.2
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.|+|.|++|+||||+|+.+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999876
No 424
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.67 E-value=0.067 Score=57.08 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.++|+|.|+.|+||||||..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999999864
No 425
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.66 E-value=0.095 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=21.0
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.|+|.|++|+||||+|+.+.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 426
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.65 E-value=0.48 Score=52.84 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
...+|.|+|++|.||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998764
No 427
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.60 E-value=0.4 Score=48.74 Aligned_cols=22 Identities=32% Similarity=0.293 Sum_probs=18.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
+.++|.|+.|.||||++..+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 6889999999999987665543
No 428
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.40 E-value=0.063 Score=56.72 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
+..+|+|.|+.|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999998654
No 429
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.37 E-value=0.11 Score=54.62 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..++|+|.|+.|+||||||..+++++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34789999999999999999999874
No 430
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.30 E-value=0.097 Score=53.50 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
.. .+++|.|+.|.|||||++.++--
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 78999999999999999999853
No 431
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.29 E-value=0.19 Score=52.04 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
...++++.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999998776
No 432
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.26 E-value=0.18 Score=52.57 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=28.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
++|+|.|-||+||||+|..++..+..+-. .+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~-~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGK-TIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTC-CEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCC-cEEEEc
Confidence 57888999999999999999998765533 566665
No 433
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.21 E-value=0.13 Score=55.01 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
....+|+|.|+.|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999998765
No 434
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.19 E-value=0.073 Score=54.19 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=16.6
Q ss_pred eEEEEEEcCCcchHHHHHHHHH-HHh
Q 001979 33 ARILGICGMGGIGKTTLARFVF-DNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~-~~~ 57 (987)
..+++|.|+.|+||||+++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 435
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.12 E-value=0.16 Score=53.85 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=28.3
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
...+++|.|++|+|||||++.++..+.......+.|+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34689999999999999999999876544221355554
No 436
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.11 E-value=0.24 Score=60.79 Aligned_cols=24 Identities=25% Similarity=0.016 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
..++++|.|+.|.||||+.+.++-
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999843
No 437
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.08 E-value=0.2 Score=53.04 Aligned_cols=37 Identities=22% Similarity=0.149 Sum_probs=28.5
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
..++++|+|.+|+||||+|..++..++..-. .+.+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~-~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR-RPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEec
Confidence 3579999999999999999999987765432 444443
No 438
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.03 E-value=0.29 Score=55.59 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=27.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
..++|+|+|.+|+||||++..++..++.+-. .+..++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~-kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW-KTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEe
Confidence 4679999999999999999999987765422 455554
No 439
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.98 E-value=0.61 Score=46.11 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=54.5
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCC-CcccccchhhHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDK-NVKIWDVHKGCHMIR 110 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~-~~~~~~~~~~~~~l~ 110 (987)
..++..++|.-|.||||.|...+.+...+-. .++.+..... ...+.. .+.+.+.... .....+.. .+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~-kVli~k~~~d--~R~ge~----~i~s~~g~~~~a~~~~~~~----~~~ 95 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQ-HAIVFKPCID--NRYSEE----DVVSHNGLKVKAVPVSASK----DIF 95 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTC-CEEEEECC-----------------------CCEEECSSGG----GGG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCC-EEEEEEeccC--CcchHH----HHHhhcCCeeEEeecCCHH----HHH
Confidence 4478899999999999999999988765544 4444431111 112212 2333321111 01111111 122
Q ss_pred HHhcCCceEEEEeCCCC--hHHHHHHhcCCCCCCCCcEEEEEeCCcc
Q 001979 111 IKLRHKRVLLVIDDVDE--FDQLQALAGQRDWFGLGSRIIITTRDRH 155 (987)
Q Consensus 111 ~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IiiTtR~~~ 155 (987)
+...++--+|++|.+.- .++++.+.... ..|-.||+|-++..
T Consensus 96 ~~~~~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 96 KHITEEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQD 139 (214)
T ss_dssp GGCCSSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSBC
T ss_pred HHHhcCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEecccc
Confidence 22223334999999733 34454433211 13778999999653
No 440
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.87 E-value=0.1 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.+.|.|.|+.|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999998863
No 441
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.81 E-value=0.14 Score=52.34 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
....+|+|.|+.|.||||+|+.+..++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999999865
No 442
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.80 E-value=0.092 Score=52.33 Aligned_cols=23 Identities=35% Similarity=0.154 Sum_probs=20.9
Q ss_pred EEEEEEcCCcchHHHHHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
.+++|.|+.|.|||||++.++--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999864
No 443
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.76 E-value=0.32 Score=48.54 Aligned_cols=28 Identities=18% Similarity=0.333 Sum_probs=24.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
...|+|.|+.|+||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999999988654
No 444
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.76 E-value=0.14 Score=57.32 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=27.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.++|+|+|++|+||||+|..++..++.+-. .+..++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~-kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGL-KPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHC-CEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEe
Confidence 468999999999999999999987654422 455554
No 445
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.76 E-value=0.16 Score=51.49 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
....|+|.|+.|+||||+++.+.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998765
No 446
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.69 E-value=0.1 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
...+++|.|+.|.|||||++.++-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999875
No 447
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.63 E-value=0.1 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
..+++|.|+.|.|||||++.++-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 448
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.56 E-value=0.22 Score=52.61 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=28.3
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.++|+|.|-||+||||+|..++..+..+-. .+..++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~-rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGK-KVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCC-eEEEEe
Confidence 368888999999999999999988765433 455555
No 449
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.54 E-value=0.69 Score=62.94 Aligned_cols=134 Identities=13% Similarity=0.090 Sum_probs=69.3
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcc---cccchhhHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVK---IWDVHKGCHMIR 110 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~---~~~~~~~~~~l~ 110 (987)
+-|.++|++|.|||++|+.+.... ..+. ...+. .+.......+++.+-.. ....... .....
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~-~~~~--~~~in----fsa~ts~~~~~~~i~~~-~~~~~~~~g~~~~P~------- 1332 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS-SLYD--VVGIN----FSKDTTTEHILSALHRH-TNYVTTSKGLTLLPK------- 1332 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC-SSCE--EEEEE----CCTTCCHHHHHHHHHHH-BCCEEETTTEEEEEB-------
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC-CCCc--eEEEE----eecCCCHHHHHHHHHHH-hhhccccCCccccCC-------
Confidence 567899999999999998887653 1222 33343 23333334444443332 2111000 00000
Q ss_pred HHhcCCceEEEEeCCCCh-----------HHHHHHhcCCCCC--CC-------CcEEEEEeCCcc------cccc-cCcC
Q 001979 111 IKLRHKRVLLVIDDVDEF-----------DQLQALAGQRDWF--GL-------GSRIIITTRDRH------LLVR-CDVE 163 (987)
Q Consensus 111 ~~L~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~--~~-------gs~IiiTtR~~~------v~~~-~~~~ 163 (987)
-.+++.++.+||++-. +-+.++.....+. .. +..+|.+|.... +-.. ....
T Consensus 1333 --~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf 1410 (2695)
T 4akg_A 1333 --SDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA 1410 (2695)
T ss_dssp --SSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE
T ss_pred --CCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee
Confidence 1367889999996431 1233333221111 11 234455554331 1000 1223
Q ss_pred ceEEcCCCCHHHHHHHHHHhh
Q 001979 164 DTYMVEKLNYNEALHLFSWKA 184 (987)
Q Consensus 164 ~~~~l~~L~~~ea~~Lf~~~a 184 (987)
.++.++..+.++-.++|....
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHH
Confidence 578899999999999988664
No 450
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.53 E-value=0.14 Score=54.36 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
.+|.|.|++|+||||+|+.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 451
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.51 E-value=0.32 Score=52.63 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=25.4
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
.+..+|+|.|.+|+||||++..+...+...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 466899999999999999999998765443
No 452
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.41 E-value=0.2 Score=52.52 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
..+++|.|++|+||||||+.++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 368999999999999999999876543
No 453
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.40 E-value=0.22 Score=56.00 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=27.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFL 68 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 68 (987)
...+++|+|+.|+||||+++.++..++.. . +.+++
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~-G~V~l 326 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-G-KSVML 326 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-T-CCEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-C-CeEEE
Confidence 45799999999999999999999876543 3 44554
No 454
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.34 E-value=0.12 Score=52.86 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
..+++|+|+.|.|||||++.++--
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999864
No 455
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.31 E-value=0.21 Score=56.78 Aligned_cols=46 Identities=2% Similarity=-0.106 Sum_probs=32.5
Q ss_pred ccchhHHHHHHHhcCCCCCeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 14 GMDYRLEQIYLMLGTGLDEARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 14 Gr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
.|.+-.+.+.+..........+|.+.|+.|.||||+|++++.++..
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3444445555544222234578999999999999999999998864
No 456
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.27 E-value=0.16 Score=51.97 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.2
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
...|+|.|..|+||||+|+.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999998764
No 457
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.19 E-value=0.21 Score=48.60 Aligned_cols=26 Identities=23% Similarity=0.061 Sum_probs=21.9
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 34 RILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
+++.|+|+.|+||||+|..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999888776543
No 458
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.17 E-value=0.12 Score=53.92 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
..+++|.|+.|.|||||++.++-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999975
No 459
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.16 E-value=0.16 Score=55.42 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=22.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
++|+|.|+.|+||||||..++.++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 588999999999999999999875
No 460
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.13 E-value=0.15 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=21.0
Q ss_pred eEEEEEEcCCcchHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
..+++|.|+.|.|||||++.++-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 461
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.99 E-value=0.15 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.5
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
..+++|.|+.|.|||||++.++--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 462
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.98 E-value=0.13 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
...+++|.|+.|.|||||++.++--
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999753
No 463
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.96 E-value=0.19 Score=53.14 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
....+++|+|+.|.|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345789999999999999999998865
No 464
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.96 E-value=0.13 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
..+++|.|+.|.|||||.+.++-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999975
No 465
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.93 E-value=0.11 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.8
Q ss_pred EEEEEEcCCcchHHHHHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
.+++|.|+.|.|||||++.++--
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999753
No 466
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.92 E-value=0.15 Score=52.31 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
...+++|+|+.|.|||||++.++-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 347899999999999999999975
No 467
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.89 E-value=0.13 Score=53.45 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
..+++|.|+.|.|||||++.++--
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 468999999999999999999753
No 468
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.87 E-value=0.13 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
...+++|.|+.|.|||||++.++--
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3468999999999999999999753
No 469
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.81 E-value=0.4 Score=51.76 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=24.9
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
....+++|.|++|+|||||.+.+...+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45689999999999999999999876543
No 470
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.81 E-value=0.14 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
..+++|.|+.|.|||||.+.++-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999975
No 471
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=89.74 E-value=0.42 Score=58.36 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
..++++|.|+.|.||||+.+.++-
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 457999999999999999998864
No 472
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.74 E-value=0.14 Score=51.94 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=21.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..+++|.|+.|.|||||++.++--+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998643
No 473
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.65 E-value=0.19 Score=49.83 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=23.2
Q ss_pred EEEEEEcCCcchHHHHHHHHHHHhh
Q 001979 34 RILGICGMGGIGKTTLARFVFDNIS 58 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~~~ 58 (987)
.+|+|.|+.|.||||+|+.+++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999873
No 474
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.61 E-value=0.14 Score=52.48 Aligned_cols=24 Identities=33% Similarity=0.663 Sum_probs=21.2
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
..+++|.|+.|.|||||++.++--
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999753
No 475
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.58 E-value=0.14 Score=52.74 Aligned_cols=24 Identities=42% Similarity=0.660 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
...+++|.|+.|.|||||++.++-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999975
No 476
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.42 E-value=0.16 Score=52.08 Aligned_cols=37 Identities=24% Similarity=0.201 Sum_probs=26.8
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHh-hcCCCcceEEEE
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNI-SYQFDDGSSFLA 69 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~-~~~f~~~~~~~~ 69 (987)
...++.|.|.+|+||||+|.+++... ...-. .++|++
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~-~v~~~s 66 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE-PGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCC-CEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC-Cceeec
Confidence 44689999999999999999987653 33233 455654
No 477
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.41 E-value=0.15 Score=52.81 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
..+++|+|+.|.|||||++.++--
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999764
No 478
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.40 E-value=0.3 Score=56.30 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
...+|+|.|+.|.||||||+.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3478999999999999999999998754
No 479
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.37 E-value=0.15 Score=52.29 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=21.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
..+++|.|+.|.|||||++.++--+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999987644
No 480
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.27 E-value=0.19 Score=49.21 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.4
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
.-.|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 481
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.18 E-value=0.16 Score=52.94 Aligned_cols=25 Identities=24% Similarity=0.468 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 32 EARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
...+++|.|+.|.|||||++.++--
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999753
No 482
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.15 E-value=0.16 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.3
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
..+++|.|+.|.|||||++.++--
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999764
No 483
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.13 E-value=0.32 Score=49.00 Aligned_cols=28 Identities=25% Similarity=0.498 Sum_probs=21.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
...|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999999987654
No 484
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.11 E-value=0.16 Score=52.27 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.3
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
..+++|.|+.|.|||||++.++--
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999864
No 485
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.11 E-value=0.16 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.9
Q ss_pred eEEEEEEcCCcchHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
..+++|.|+.|.|||||++.++-
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999875
No 486
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.98 E-value=0.35 Score=49.60 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=26.6
Q ss_pred EEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 36 LGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 36 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
|+|.|-||+||||+|..++..+..+-. .+.-++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~-~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYD-KIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCS-CEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCC-eEEEEe
Confidence 566999999999999999998876544 566665
No 487
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.92 E-value=0.25 Score=46.48 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEEEcCCcchHHHHHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
+.|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 488
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.76 E-value=0.43 Score=48.40 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=24.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcC
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQ 60 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~ 60 (987)
...|+|.|+.|+||||+++.+.+.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3689999999999999999999987654
No 489
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=88.72 E-value=0.33 Score=48.02 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=27.7
Q ss_pred EEEEEE-cCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 34 RILGIC-GMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 34 ~~v~I~-G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
++|+|+ +-||+||||+|..++..+..+-. .+..++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~-~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGY-NIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCC-eEEEEE
Confidence 578887 68999999999999998776544 566665
No 490
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.72 E-value=0.36 Score=51.80 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=28.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEE
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLA 69 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 69 (987)
.+++...|.||+||||+|..++..+..+-. .+.-++
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~-rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGK-KTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCC-cEEEEe
Confidence 467778899999999999999998776644 566665
No 491
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.62 E-value=0.64 Score=60.25 Aligned_cols=96 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHhc-CCCCCeEEEEEEcCCcchHHHHHHHHHHHhhcCCCcceEEEEehHhhhhccCHHHHHHHHHHHHhcCCCcc
Q 001979 20 EQIYLMLG-TGLDEARILGICGMGGIGKTTLARFVFDNISYQFDDGSSFLANVREVSQTRGLVALQEQLVSEILLDKNVK 98 (987)
Q Consensus 20 ~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 98 (987)
.+|..++. .+-....+|.|.|++|+||||||.+++.....+-. .+.|++ ......... .+.+......-
T Consensus 718 ~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~-~VlyiS----~Ees~~ql~-----A~~lGvd~~~L 787 (1706)
T 3cmw_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFID----AEHALDPIY-----ARKLGVDIDNL 787 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEC----TTSCCCHHH-----HHHTTCCGGGC
T ss_pred HHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCC-CeEEEe----ccchHHHHH-----HHHcCCChhhe
Q ss_pred cccchhhHHHHHHHhc-----CCceEEEEeCC
Q 001979 99 IWDVHKGCHMIRIKLR-----HKRVLLVIDDV 125 (987)
Q Consensus 99 ~~~~~~~~~~l~~~L~-----~k~~LlVlDdv 125 (987)
..........+.+.++ .+.-+||+|.+
T Consensus 788 ~i~~~~~leei~~~l~~lv~~~~~~lVVIDsL 819 (1706)
T 3cmw_A 788 LCSQPDTGEQALEICDALARSGAVDVIVVDSV 819 (1706)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred EEecCCcHHHHHHHHHHHHHccCCCEEEEech
No 492
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.58 E-value=0.27 Score=46.69 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.0
Q ss_pred EEEEEEcCCcchHHHHHHHHHH
Q 001979 34 RILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 34 ~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
..|+|.|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5688999999999999999975
No 493
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.51 E-value=0.24 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.1
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
...|+|.|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999874
No 494
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.48 E-value=0.18 Score=51.13 Aligned_cols=26 Identities=27% Similarity=0.135 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHH
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDN 56 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~ 56 (987)
....+|+|.|+.|.||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999998765
No 495
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.34 E-value=0.19 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.720 Sum_probs=20.8
Q ss_pred eEEEEEEcCCcchHHHHHHHHHH
Q 001979 33 ARILGICGMGGIGKTTLARFVFD 55 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~ 55 (987)
..+++|+|+.|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 36899999999999999999875
No 496
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.22 E-value=0.23 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.7
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 497
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=88.21 E-value=0.44 Score=51.48 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=30.2
Q ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHhh--cCCCcceEEEE
Q 001979 31 DEARILGICGMGGIGKTTLARFVFDNIS--YQFDDGSSFLA 69 (987)
Q Consensus 31 ~~~~~v~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~~ 69 (987)
...+++.+.|.||+||||+|..++..+. ..-. .+..++
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~-~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNE-QFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTS-CEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCC-eEEEEE
Confidence 3458899999999999999999999877 4444 566665
No 498
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.17 E-value=0.24 Score=48.00 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.9
Q ss_pred EEEEEcCCcchHHHHHHHHHHHh
Q 001979 35 ILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 35 ~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
+.+|+|+.|.|||||+.+++--+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998754
No 499
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.11 E-value=0.35 Score=48.54 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCcchHHHHHHHHHHHhhc
Q 001979 32 EARILGICGMGGIGKTTLARFVFDNISY 59 (987)
Q Consensus 32 ~~~~v~I~G~gGiGKTtLA~~v~~~~~~ 59 (987)
....|+|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999998765
No 500
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.08 E-value=0.21 Score=51.70 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=21.7
Q ss_pred eEEEEEEcCCcchHHHHHHHHHHHh
Q 001979 33 ARILGICGMGGIGKTTLARFVFDNI 57 (987)
Q Consensus 33 ~~~v~I~G~gGiGKTtLA~~v~~~~ 57 (987)
-.+++|.|+.|.|||||++.++--.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998643
Done!