BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001980
(987 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/982 (36%), Positives = 553/982 (56%), Gaps = 7/982 (0%)
Query: 5 LGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFS 64
+ +G + + S+AL FWY + + G+ T FS ++G S+GQ+ N+ AF+
Sbjct: 293 ISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFA 352
Query: 65 KGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIF 124
+ A Y++ +II KPSI +G D + GN+EFKN+ FSYPSR +V I + ++
Sbjct: 353 NARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLK 412
Query: 125 FPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQE 184
L++R YDP G V +D DI+T+ +R+LR+ IG+V+QE
Sbjct: 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQE 472
Query: 185 PALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQK 244
P LFATTI ENI YG+ + FI LP+ + T VGERG QLSGGQK
Sbjct: 473 PVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQK 532
Query: 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVD 304
QRIAIARA+++NPKILLLDEATSALD SE++VQ ALD+ GRTT+V+AHRLST+RN D
Sbjct: 533 QRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNAD 592
Query: 305 TVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPXXXXXXXXXXXXXXXX 364
+A G +VE G H+EL+ + G Y L+ Q + N
Sbjct: 593 VIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSK 652
Query: 365 XXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIM 424
G + +S E ++ P F R+LKLN+ EWPY ++
Sbjct: 653 DSGSSLIRRRSTRKSI--CGPHDQDRKLSTKEALDED-VPPASFWRILKLNSTEWPYFVV 709
Query: 425 GAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKE-FVFIYIGAGLYAVVAYLIQ 483
G ++++G + P F+++ + ++ VF P +R+ F +++ G+ + + + +Q
Sbjct: 710 GIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQ 769
Query: 484 HYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRI 543
+ F GE LT R+R M+ ++LR +V WFD+ ++ + + RLA DAA VK A R+
Sbjct: 770 GFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRL 829
Query: 544 SVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKT 603
+VI QN+ +L T I++ I W+++LL+L P++ +A + L G A K +
Sbjct: 830 AVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGS 889
Query: 604 SMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASE 663
IA E + N RTV + + K +++ L++P ++++ GI F +Q ++ S
Sbjct: 890 GKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSY 949
Query: 664 ALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEIIRGGESVGSVFSTLD 723
A +G +LV + + TF A +V + S AP+ + S + ++
Sbjct: 950 AACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009
Query: 724 RSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASG 783
++ ID + G ++ V F YP+RP + V + +L ++ GQ+ ALVG+SG
Sbjct: 1010 KTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSG 1069
Query: 784 SGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAY 843
GKS+V+ L+ERFYDP AG V +DGK+I++LN++ LR ++G+V QEP LF SI +NIAY
Sbjct: 1070 CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129
Query: 844 GKEGXXXXXXXXXXXXXXX--HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901
G H F+ +LP+ Y T VG++G QLSGGQKQRIAIARA+++
Sbjct: 1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189
Query: 902 PAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVE 961
P ILLLDEATSALD ESE V+QEAL++ GRT +++AHRLSTI+ D I V+Q+G++ E
Sbjct: 1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249
Query: 962 QGSHSELVSRPDGAYSRLLQLQ 983
G+H +L+++ G Y ++ +Q
Sbjct: 1250 HGTHQQLLAQK-GIYFSMVSVQ 1270
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/583 (35%), Positives = 312/583 (53%), Gaps = 26/583 (4%)
Query: 421 YSIMGAIGSVLSGFIGPTFAIVMACMIEVF-----YYRNPASM------------ERKTK 463
Y ++G + +++ G P ++ M + F +N +M E +
Sbjct: 49 YMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMT 108
Query: 464 EFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSL 523
+ + Y G G ++ IQ F+ + ++R+ AI+ E+GWFD H+
Sbjct: 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV--HDVGE 166
Query: 524 VAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANF 583
+ RL D + + I D+I + Q M + FI+ F W+++L+IL P+L L+
Sbjct: 167 LNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAG 226
Query: 584 AQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR 643
L F A+AK +A E ++ IRTV AF Q K L + + L + ++
Sbjct: 227 IWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIK 286
Query: 644 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVS 703
+++TA I G + ++AS AL WYG LV + + A SV +
Sbjct: 287 KAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQA-- 344
Query: 704 LAPEIIRGGESVGS---VFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDV 760
+P I + G+ VF +D ID + I+G +E +++ F+YPSR +V
Sbjct: 345 -SPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEV 403
Query: 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 820
+ K NL++++GQ+ ALVG SG GKS+ + L++R YDP G V IDG+DIR +N++ LR
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463
Query: 821 LKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGER 880
IG+V QEP LFA +I +NI YG+E + F+ LP+ + T VGER
Sbjct: 464 EIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGER 523
Query: 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 940
G QLSGGQKQRIAIARA+++NP ILLLDEATSALD ESE V+Q AL++ GRTT+++AH
Sbjct: 524 GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAH 583
Query: 941 RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
RLST+R D I G IVEQG+H EL+ R G Y +L+ Q
Sbjct: 584 RLSTVRNADVIAGFDGGVIVEQGNHDELM-REKGIYFKLVMTQ 625
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/982 (36%), Positives = 553/982 (56%), Gaps = 7/982 (0%)
Query: 5 LGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFS 64
+ +G + + S+AL FWY + + G+ T FS ++G S+GQ+ N+ AF+
Sbjct: 293 ISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFA 352
Query: 65 KGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIF 124
+ A Y++ +II KPSI +G D + GN+EFKN+ FSYPSR +V I + ++
Sbjct: 353 NARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLK 412
Query: 125 FPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQE 184
L++R YDP G V +D DI+T+ +R+LR+ IG+V+QE
Sbjct: 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQE 472
Query: 185 PALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQK 244
P LFATTI ENI YG+ + FI LP+ + T VGERG QLSGGQK
Sbjct: 473 PVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQK 532
Query: 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVD 304
QRIAIARA+++NPKILLLDEATSALD SE++VQ ALD+ GRTT+V+AHRLST+RN D
Sbjct: 533 QRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNAD 592
Query: 305 TVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPXXXXXXXXXXXXXXXX 364
+A G +VE G H+EL+ + G Y L+ Q + N
Sbjct: 593 VIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSK 652
Query: 365 XXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIM 424
G + +S E ++ P F R+LKLN+ EWPY ++
Sbjct: 653 DSGSSLIRRRSTRKSI--CGPHDQDRKLSTKEALDED-VPPASFWRILKLNSTEWPYFVV 709
Query: 425 GAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKE-FVFIYIGAGLYAVVAYLIQ 483
G ++++G + P F+++ + ++ VF P +R+ F +++ G+ + + + +Q
Sbjct: 710 GIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQ 769
Query: 484 HYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRI 543
+ F GE LT R+R M+ ++LR +V WFD+ ++ + + RLA DAA VK A R+
Sbjct: 770 GFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRL 829
Query: 544 SVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKT 603
+VI QN+ +L T I++ I W+++LL+L P++ +A + L G A K +
Sbjct: 830 AVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGS 889
Query: 604 SMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASE 663
IA E + N RTV + + K +++ L++P ++++ GI F +Q ++ S
Sbjct: 890 GKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSY 949
Query: 664 ALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEIIRGGESVGSVFSTLD 723
A +G +LV + + TF A +V + S AP+ + S + ++
Sbjct: 950 AAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009
Query: 724 RSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASG 783
++ ID + G ++ V F YP+RP + V + +L ++ GQ+ ALVG+SG
Sbjct: 1010 KTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSG 1069
Query: 784 SGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAY 843
GKS+V+ L+ERFYDP AG V +DGK+I++LN++ LR ++G+V QEP LF SI +NIAY
Sbjct: 1070 CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129
Query: 844 GKEGXXXXXXXXXXXXXXX--HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901
G H F+ +LP+ Y T VG++G QLSGGQKQRIAIARA+++
Sbjct: 1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189
Query: 902 PAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVE 961
P ILLLDEATSALD ESE V+QEAL++ GRT +++AHRLSTI+ D I V+Q+G++ E
Sbjct: 1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249
Query: 962 QGSHSELVSRPDGAYSRLLQLQ 983
G+H +L+++ G Y ++ +Q
Sbjct: 1250 HGTHQQLLAQK-GIYFSMVSVQ 1270
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/583 (35%), Positives = 312/583 (53%), Gaps = 26/583 (4%)
Query: 421 YSIMGAIGSVLSGFIGPTFAIVMACMIEVF-----YYRNPASM------------ERKTK 463
Y ++G + +++ G P ++ M + F +N +M E +
Sbjct: 49 YMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMT 108
Query: 464 EFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSL 523
+ + Y G G ++ IQ F+ + ++R+ AI+ E+GWFD H+
Sbjct: 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV--HDVGE 166
Query: 524 VAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANF 583
+ RL D + + I D+I + Q M + FI+ F W+++L+IL P+L L+
Sbjct: 167 LNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAG 226
Query: 584 AQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR 643
L F A+AK +A E ++ IRTV AF Q K L + + L + ++
Sbjct: 227 IWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIK 286
Query: 644 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVS 703
+++TA I G + ++AS AL WYG LV + + A SV +
Sbjct: 287 KAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQA-- 344
Query: 704 LAPEIIRGGESVGS---VFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDV 760
+P I + G+ VF +D ID + I+G +E +++ F+YPSR +V
Sbjct: 345 -SPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEV 403
Query: 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 820
+ K NL++++GQ+ ALVG SG GKS+ + L++R YDP G V IDG+DIR +N++ LR
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463
Query: 821 LKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGER 880
IG+V QEP LFA +I +NI YG+E + F+ LP+ + T VGER
Sbjct: 464 EIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGER 523
Query: 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 940
G QLSGGQKQRIAIARA+++NP ILLLDEATSALD ESE V+Q AL++ GRTT+++AH
Sbjct: 524 GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAH 583
Query: 941 RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
RLST+R D I G IVEQG+H EL+ R G Y +L+ Q
Sbjct: 584 RLSTVRNADVIAGFDGGVIVEQGNHDELM-REKGIYFKLVMTQ 625
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 588 bits (1516), Expect = e-168, Method: Compositional matrix adjust.
Identities = 349/1008 (34%), Positives = 522/1008 (51%), Gaps = 33/1008 (3%)
Query: 3 KGLGLGCTYGIA----CMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFS 58
KGL LG ++G +S+AL F+ ++ +G + G T S ++G M+LG +
Sbjct: 315 KGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGP 374
Query: 59 NLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIF 118
L + A + E++ +KP I GR ++ G+I +NV F+YPSRPDV I
Sbjct: 375 QLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPIL 434
Query: 119 RDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178
R ++ L+ R+YD G + +D VD++ + L +LR +
Sbjct: 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494
Query: 179 GLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQ 238
+V+QEPALF TI ENI GK FI LPNGY+T VG+RG Q
Sbjct: 495 AVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQ 554
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 298
LSGGQKQRIAIARA+++NPKILLLDEATSALDA SE IVQ+ALD+ GRTT+++AHRLS
Sbjct: 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614
Query: 299 TIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFA--------NPXX 350
TIRN D + + GQVVE G H L+A+ G Y L+ Q D A N
Sbjct: 615 TIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVA 674
Query: 351 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGA--DGRIEMVSNAETDR------KNP 402
G D + E + R +N
Sbjct: 675 RQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENN 734
Query: 403 APDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKT 462
A +L P +G + + GFI PT+++ + VF NPA +
Sbjct: 735 AQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFA-GNPADFLSQG 793
Query: 463 KEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSS 522
+ +++ + + +F I E+LT +R + +L +G+FD ++ S
Sbjct: 794 HFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASG 853
Query: 523 LVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLAN 582
++ RLATD ++++AI R S ++ + S++ +AF W+++LLI+ P++
Sbjct: 854 KISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVA--- 910
Query: 583 FAQQLSLKGFAGDTAKA---HAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQS 639
F Q L + F G K+ A + IA E + N+RTV A ++ FC +L +P
Sbjct: 911 FGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHK 970
Query: 640 QTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFS--KXXXXXXXXXXTANS 697
+ ++ + G+ +G + L+ G+ L+ T + + ++
Sbjct: 971 EAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTST 1030
Query: 698 VAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSR 757
+ S PE + + G +F L + ++ID E + + G++ ++V FAYP R
Sbjct: 1031 LGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEK-KKLYGKVIFKNVRFAYPER 1089
Query: 758 PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 817
P++ + K + + GQ+ ALVG SG GKS+V+AL+ERFYD G++ IDG +I+ LN +
Sbjct: 1090 PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPE 1149
Query: 818 SLRLKIGLVQQEPALFAASIFDNIAYGKE--GXXXXXXXXXXXXXXXHGFVSALPNAYKT 875
R +I +V QEP LF SI +NI YG + H F++ LP ++T
Sbjct: 1150 HTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFET 1209
Query: 876 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 935
VG+RG QLSGGQKQRIAIARA+++NP ILLLDEATSALD ESE V+QEAL+R GRT
Sbjct: 1210 RVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTC 1269
Query: 936 VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
+++AHRL+T+ DCI VV +G I+E+G+H++L+S GAY +L Q Q
Sbjct: 1270 IVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEK-GAYYKLTQKQ 1316
Score = 349 bits (895), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 197/514 (38%), Positives = 290/514 (56%), Gaps = 11/514 (2%)
Query: 473 GLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDA 532
G++A + Y + + E + R+RR + +ILR E+ WFD ++S +A +L +
Sbjct: 148 GMWAAGQITVTCYLY--VAEQMNNRLRREFVKSILRQEISWFDT--NHSGTLATKLFDNL 203
Query: 533 ADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGF 592
VK D+I + Q ++ +T FIVAF W+++L++L P+ L FA S+ F
Sbjct: 204 ERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTF 263
Query: 593 AGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILF 652
A +AK + E +S+IRTV + N L + + + + + L GI F
Sbjct: 264 AIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISF 323
Query: 653 GISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEIIRGG 712
G Q + S AL + GV V G F + ++ P++ G
Sbjct: 324 GAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLA---GPQLAVLG 380
Query: 713 ESVGS---VFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLR 769
+ G+ ++ LDR ID I+G+I + +V F YPSRPDV + + NLR
Sbjct: 381 TAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLR 440
Query: 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 829
+ AGQ+ ALVG+SG GKS++I+L+ R+YD GK+ IDG D+R +NL+ LR + +V QE
Sbjct: 441 VNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQE 500
Query: 830 PALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQK 889
PALF +I +NI+ GKEG F+ LPN Y T VG+RG QLSGGQK
Sbjct: 501 PALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK 560
Query: 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVD 949
QRIAIARA+++NP ILLLDEATSALDAESE ++Q+AL++ +GRTT+++AHRLSTIR D
Sbjct: 561 QRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNAD 620
Query: 950 CIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
I ++G++VE G H L+++ G Y L+ Q
Sbjct: 621 LIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQ 653
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 306 bits (784), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 201/586 (34%), Positives = 307/586 (52%), Gaps = 23/586 (3%)
Query: 410 RLLKLNAPEWPYSIMGAIGSV-LSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFI 468
+LL L PE + A+G + +S I + + +I+V Y
Sbjct: 9 KLLGLAYPER-RRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLG 67
Query: 469 YIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARL 528
L A I+ Y G+ + R+R + ++ILR EV +FD+ + RL
Sbjct: 68 LSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGE--LINRL 125
Query: 529 ATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLS 588
++D A + ++ + +S L+ + F V ++ +L P + +
Sbjct: 126 SSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRY 185
Query: 589 LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ----NKILSLFCHELRVPQSQTLRR 644
L+ T + A+ + +A E + N+RTV AF + K S H +++ + + R
Sbjct: 186 LRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFAR 245
Query: 645 SLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSL 704
AG FG + + + +L+ G L+G T + S+ S
Sbjct: 246 ---AG-FFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSF 301
Query: 705 APEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPV----ETIRGEIELRHVDFAYPSRPDV 760
E+++G + G ++ L+R +P P E V ++ +G +E ++V FAYP+RP+V
Sbjct: 302 YSELMKGLGAGGRLWELLER----EPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEV 357
Query: 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 820
+F+DF+L I +G ALVG SGSGKS+V++L+ R YDP +G + +DG DIR+LN LR
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417
Query: 821 LKIGLVQQEPALFAASIFDNIAYGKE---GXXXXXXXXXXXXXXXHGFVSALPNAYKTPV 877
KIG V QEP LF+ SI +NIAYG + F+ P + T V
Sbjct: 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 878 GERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVL 937
GE+GV LSGGQKQRIAIARA+LKNP ILLLDEATSALDAE+E ++QEAL+RLM GRT ++
Sbjct: 478 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLV 537
Query: 938 VAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
+AHRLSTI+ + + V+ G+I E G H EL+S+P+G Y +L+ Q
Sbjct: 538 IAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 583
Score = 252 bits (644), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 146/327 (44%), Positives = 195/327 (59%), Gaps = 10/327 (3%)
Query: 21 VFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQK 80
V + G+ + + G+ + + A G+S+G S KG AG +L E+++++
Sbjct: 263 VLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLERE 322
Query: 81 PSIIQDPTN-GRCLDE--VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXX 137
P + P N G L+E G +EFKNV F+YP+RP+V IF+DFS+ P
Sbjct: 323 PKL---PFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPS 379
Query: 138 XXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENIL 197
L+ R YDP +G + LD DI+ L WLR +IG V+QEP LF+ +I ENI
Sbjct: 380 GSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIA 439
Query: 198 YGK---PXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254
YG +FI P G++T VGE+GV LSGGQKQRIAIARA+L
Sbjct: 440 YGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL 499
Query: 255 KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQV 314
KNPKILLLDEATSALDA +E +VQEALDRLM GRT +V+AHRLSTI+N + VAV+ QG++
Sbjct: 500 KNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKI 559
Query: 315 VETGTHEELIAKA-GAYASLIRFQEMV 340
E G HEEL++K G Y L+ Q +
Sbjct: 560 TEYGKHEELLSKPNGIYRKLMNKQSFI 586
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 304 bits (778), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 196/582 (33%), Positives = 305/582 (52%), Gaps = 15/582 (2%)
Query: 410 RLLKLNAPEWPYSIMGAIGSV-LSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFI 468
+LL L PE + A+G + +S I + + +I+V Y
Sbjct: 40 KLLGLAYPER-RRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLG 98
Query: 469 YIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARL 528
L A I+ Y G+ + R+R + ++ILR EV +FD+ + RL
Sbjct: 99 LSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGE--LINRL 156
Query: 529 ATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLS 588
++D A + ++ + +S L+ + F V ++ +L P + +
Sbjct: 157 SSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRY 216
Query: 589 LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ----NKILSLFCHELRVPQSQTLRR 644
L+ T + A+ + +A E + N+RTV AF + K S H +++ + + R
Sbjct: 217 LRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFAR 276
Query: 645 SLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSL 704
AG FG + + + +L+ G L+G T + S+ S
Sbjct: 277 ---AG-FFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSF 332
Query: 705 APEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFK 764
E+++G + G ++ L+R ++ ++ ++ +G +E ++V FAYP+RP+V +F+
Sbjct: 333 YSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQ 392
Query: 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824
DF+L I +G ALVG SGSGKS+V++L+ R YDP +G + +DG DIR+LN LR KIG
Sbjct: 393 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 452
Query: 825 LVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXH---GFVSALPNAYKTPVGERG 881
V QEP LF+ SI +NIAYG + F+ P + T VGE+G
Sbjct: 453 TVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKG 512
Query: 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHR 941
V LSGGQKQRIAIARA+LKNP ILLLDEATSALDAE+E ++QEAL+RLM GRT +++AH
Sbjct: 513 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHH 572
Query: 942 LSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
LSTI+ + + V+ G+I E G H EL+S+P+G Y +L+ Q
Sbjct: 573 LSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 614
Score = 250 bits (639), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 146/327 (44%), Positives = 195/327 (59%), Gaps = 10/327 (3%)
Query: 21 VFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQK 80
V + G+ + + G+ + + A G+S+G S KG AG +L E+++++
Sbjct: 294 VLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLERE 353
Query: 81 PSIIQDPTN-GRCLDE--VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXX 137
P + P N G L+E G +EFKNV F+YP+RP+V IF+DFS+ P
Sbjct: 354 PKL---PFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPS 410
Query: 138 XXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENIL 197
L+ R YDP +G + LD DI+ L WLR +IG V+QEP LF+ +I ENI
Sbjct: 411 GSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIA 470
Query: 198 YG--KPXXXXXXXXXXXXXXXXH-SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254
YG P +FI P G++T VGE+GV LSGGQKQRIAIARA+L
Sbjct: 471 YGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL 530
Query: 255 KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQV 314
KNPKILLLDEATSALDA +E +VQEALDRLM GRT +V+AH LSTI+N + VAV+ QG++
Sbjct: 531 KNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKI 590
Query: 315 VETGTHEELIAKA-GAYASLIRFQEMV 340
E G HEEL++K G Y L+ Q +
Sbjct: 591 TEYGKHEELLSKPNGIYRKLMNKQSFI 617
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 246 bits (629), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 239/461 (51%), Gaps = 3/461 (0%)
Query: 524 VAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANF 583
V +R+ D K I + I + +++ + + F ++ +++L L +P +L +
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 584 AQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR 643
L+ + ++A A+ E V I V +F ++ F + ++ L+
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 644 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVS 703
+ F +++ G +L G T + V+
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVA 299
Query: 704 LAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVF 763
+ + S+ VF +D I + A+P+E +G I++ HV F Y + +
Sbjct: 300 SFTTLTQSFASMDRVFQLIDEDYDI-KNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPIL 357
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823
KD NL I G++ A VG SG GKS++I LI RFYD T+G+++IDG +I+ SLR +I
Sbjct: 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417
Query: 824 GLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQ 883
GLVQQ+ LF+ ++ +NI G+ H F+ LP Y T VGERGV+
Sbjct: 418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477
Query: 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLS 943
LSGGQKQR++IAR L NP IL+LDEATSALD ESE ++QEAL+ L + RTT++VAHRLS
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537
Query: 944 TIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 984
TI D I V+++G IVE G+H EL+++ GAY L +Q+
Sbjct: 538 TITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQN 577
Score = 211 bits (537), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/256 (45%), Positives = 150/256 (58%), Gaps = 1/256 (0%)
Query: 84 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXX 143
I++ + ++ G I+ +V+F Y + I +D ++
Sbjct: 324 IKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKST 382
Query: 144 XXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXX 203
LI RFYD +G +L+D +IK LR+QIGLV Q+ LF+ T+ ENIL G+P
Sbjct: 383 LINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA 442
Query: 204 XXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 263
H FI LP GY T+VGERGV+LSGGQKQR++IAR L NP IL+LD
Sbjct: 443 TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILD 502
Query: 264 EATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323
EATSALD SESI+QEALD L RTT++VAHRLSTI + D + VI+ G +VETGTH EL
Sbjct: 503 EATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHREL 562
Query: 324 IAKAGAYASLIRFQEM 339
IAK GAY L Q +
Sbjct: 563 IAKQGAYEHLYSIQNL 578
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 244 bits (624), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 160/525 (30%), Positives = 265/525 (50%), Gaps = 19/525 (3%)
Query: 467 FIYIGAGLYAVVAYL--IQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLV 524
++ I +YA+ + L +Q + +++ R+R+ + + R VG+FD H +
Sbjct: 79 YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGD--I 136
Query: 525 AARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFA 584
+R+ D ++ + + + I + +L + I+ F V +SL+ L PL VL
Sbjct: 137 ISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQI 196
Query: 585 QQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRR 644
+ + + + + + I E +S + + F + K + F RV +S LR+
Sbjct: 197 VSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFD---RVNES--LRK 251
Query: 645 -----SLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVA 699
+ +G+L + + ALI +G L K + T +
Sbjct: 252 VGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLN 311
Query: 700 ETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPD 759
E + I S +F LD + DDPDA + +RGEIE ++V F+Y +
Sbjct: 312 ELSNQFNMIQMALASAERIFEILDLEE--EKDDPDAVELREVRGEIEFKNVWFSYDKKKP 369
Query: 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819
V+ KD I+ GQ ALVG +GSGK++++ L+ RFYD G++++DG DIR++ SL
Sbjct: 370 VL--KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 820 RLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGE 879
R IG+V Q+ LF+ ++ +N+ YG G F+ LP Y+T + +
Sbjct: 428 RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTD 487
Query: 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA 939
G LS GQ+Q +AI RA L NP IL+LDEATS +D ++E +Q A+ +LM G+T++++A
Sbjct: 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIA 547
Query: 940 HRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 984
HRL+TI+ D I V++DG IVE G H EL+ + G Y L Q+
Sbjct: 548 HRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQY 591
Score = 186 bits (472), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 103/270 (38%), Positives = 150/270 (55%), Gaps = 4/270 (1%)
Query: 68 AAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPX 127
A+ ++ EI+ + +D + L EV G IEFKNV FSY + V+ +D +
Sbjct: 325 ASAERIFEILDLEEE--KDDPDAVELREVRGEIEFKNVWFSYDKKKPVL--KDITFHIKP 380
Query: 128 XXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPAL 187
L+ RFYD + G +L+D +DI+ ++ LR IG+V Q+ L
Sbjct: 381 GQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTIL 440
Query: 188 FATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247
F+TT+ EN+ YG P FI LP GY T + + G LS GQ+Q +
Sbjct: 441 FSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLL 500
Query: 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVA 307
AI RA L NPKIL+LDEATS +D +E +Q A+ +LM G+T++++AHRL+TI+N D +
Sbjct: 501 AITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLII 560
Query: 308 VIQQGQVVETGTHEELIAKAGAYASLIRFQ 337
V++ G++VE G H+ELI K G Y L Q
Sbjct: 561 VLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 155/518 (29%), Positives = 262/518 (50%), Gaps = 8/518 (1%)
Query: 467 FIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAA 526
+ IG + + + Y S + + +RR + ++ V +FD++ + L +
Sbjct: 69 LVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLL--S 126
Query: 527 RLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQ 586
R+ D+ V S+ + + +++ S++ FI+ F W++S++++ P++ +A
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVS 186
Query: 587 LSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 646
+ + + + + A + + + V F Q F + Q ++
Sbjct: 187 KRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVS 246
Query: 647 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAP 706
+ I I Q + A +L+ T + ++
Sbjct: 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNA 306
Query: 707 EIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDF 766
+ RG + ++F+ LD D +E G++E R+V F YP R DV ++
Sbjct: 307 QFQRGMAACQTLFTILDSE---QEKDEGKRVIERATGDVEFRNVTFTYPGR-DVPALRNI 362
Query: 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 826
NL+I AG++ ALVG SGSGKS++ +LI RFYD G++++DG D+R L SLR ++ LV
Sbjct: 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALV 422
Query: 827 QQEPALFAASIFDNIAYGK-EGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLS 885
Q LF ++ +NIAY + E F++ + N T +GE GV LS
Sbjct: 423 SQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482
Query: 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 945
GGQ+QRIAIARA+L++ IL+LDEATSALD ESE +Q AL+ L + RT++++AHRLSTI
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 542
Query: 946 RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
D I VV+DG IVE+G+H++L+ G Y++L ++Q
Sbjct: 543 EKADEIVVVEDGVIVERGTHNDLLEHR-GVYAQLHKMQ 579
Score = 209 bits (531), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 180/330 (54%), Gaps = 13/330 (3%)
Query: 13 IACMSWALVFWYAGVF--IRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGA-FSKGKAA 69
IA ++ A V YA F + + +T G T +FS+++ M +S +N+ A F +G AA
Sbjct: 258 IASLALAFVL-YAASFPSVMDSLTAG--TITVVFSSMIALMRPLKSLTNVNAQFQRGMAA 314
Query: 70 GYKLMEIIKQKPSIIQDPTNG-RCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXX 128
L I+ + Q+ G R ++ G++EF+NVTF+YP R DV R+ ++ P
Sbjct: 315 CQTLFTILDSE----QEKDEGKRVIERATGDVEFRNVTFTYPGR-DVPALRNINLKIPAG 369
Query: 129 XXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF 188
LI RFYD + G +L+D D++ L LR+Q+ LV+Q LF
Sbjct: 370 KTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLF 429
Query: 189 ATTILENILYGKPXXXXXXXXXXXXXXX-XHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247
T+ NI Y + FI + NG T +GE GV LSGGQ+QRI
Sbjct: 430 NDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRI 489
Query: 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVA 307
AIARA+L++ IL+LDEATSALD SE +Q ALD L RT++V+AHRLSTI D +
Sbjct: 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIV 549
Query: 308 VIQQGQVVETGTHEELIAKAGAYASLIRFQ 337
V++ G +VE GTH +L+ G YA L + Q
Sbjct: 550 VVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 233 bits (594), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 157/521 (30%), Positives = 267/521 (51%), Gaps = 14/521 (2%)
Query: 467 FIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAA 526
+ IG + + I Y S + + +RR + ++ V +FD++ + L +
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLL--S 126
Query: 527 RLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQ 586
R+ D+ V S+ + + +++ S++ FI+ F W++S++++ P++ +A
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 186
Query: 587 LSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ---NKILSLFCHELRVPQSQTLR 643
+ + + + + A + + + V F Q K +++R+ Q ++
Sbjct: 187 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRL---QGMK 243
Query: 644 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVS 703
+ I I Q + A +L+ T + +
Sbjct: 244 MVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTN 303
Query: 704 LAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVF 763
+ + RG + ++F+ LD D ++ G++E R+V F YP R +V
Sbjct: 304 VNAQFQRGMAACQTLFAILDSE---QEKDEGKRVIDRATGDLEFRNVTFTYPGR-EVPAL 359
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823
++ NL+I AG++ ALVG SGSGKS++ +LI RFYD G +++DG D+R L SLR ++
Sbjct: 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419
Query: 824 GLVQQEPALFAASIFDNIAYGK-EGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGV 882
LV Q LF ++ +NIAY + E F++ + N T +GE GV
Sbjct: 420 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGV 479
Query: 883 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 942
LSGGQ+QRIAIARA+L++ IL+LDEATSALD ESE +Q AL+ L + RT++++AHRL
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 539
Query: 943 STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
STI D I VV+DG IVE+G+HSEL+++ G Y++L ++Q
Sbjct: 540 STIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQ 579
Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 130/330 (39%), Positives = 183/330 (55%), Gaps = 13/330 (3%)
Query: 13 IACMSWALVFWYAGVF--IRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGA-FSKGKAA 69
IA ++ A V YA F + + +T G T +FS+++ M +S +N+ A F +G AA
Sbjct: 258 IASLALAFVL-YAASFPSVMDSLTAG--TITVVFSSMIALMRPLKSLTNVNAQFQRGMAA 314
Query: 70 GYKLMEIIKQKPSIIQDPTNG-RCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXX 128
L I+ + Q+ G R +D G++EF+NVTF+YP R +V R+ ++ P
Sbjct: 315 CQTLFAILDSE----QEKDEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAG 369
Query: 129 XXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF 188
LI RFYD + GH+L+D D++ L LR+Q+ LV+Q LF
Sbjct: 370 KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLF 429
Query: 189 ATTILENILYGKPXXXXXXXXXXXXXXX-XHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247
T+ NI Y + FI + NG T +GE GV LSGGQ+QRI
Sbjct: 430 NDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489
Query: 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVA 307
AIARA+L++ IL+LDEATSALD SE +Q ALD L RT++V+AHRLSTI D +
Sbjct: 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIV 549
Query: 308 VIQQGQVVETGTHEELIAKAGAYASLIRFQ 337
V++ G +VE GTH EL+A+ G YA L + Q
Sbjct: 550 VVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 152/241 (63%), Gaps = 3/241 (1%)
Query: 744 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
+I R++ F Y P P V+ + NL I+ G+ +VG SGSGKS++ LI+RFY P G
Sbjct: 3 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 862
+V+IDG D+ + LR ++G+V Q+ L SI DNI+ G
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
H F+S L Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 923 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982
+ ++ +GRT +++AHRLST++ D I V++ G+IVEQG H EL+S P+ YS L QL
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 983 Q 983
Q
Sbjct: 241 Q 241
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 138/241 (57%), Gaps = 4/241 (1%)
Query: 99 NIEFKNVTFSY-PSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAG 157
+I F+N+ F Y P P +I + ++ LI+RFY P G
Sbjct: 3 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXX 217
VL+D D+ WLR Q+G+V Q+ L +I++NI P
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
H FI+ L GY+T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD SE ++
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 278 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA-YASLIRF 336
+ ++ GRT +++AHRLST++N D + V+++G++VE G H+EL+++ + Y+ L +
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 337 Q 337
Q
Sbjct: 241 Q 241
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 213 bits (543), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 152/241 (63%), Gaps = 3/241 (1%)
Query: 744 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
+I R++ F Y P P V+ + NL I+ G+ +VG SGSGKS++ LI+RFY P G
Sbjct: 1 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 862
+V+IDG D+ + LR ++G+V Q+ L SI DNI+ G
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
H F+S L Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 923 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982
+ ++ +GRT +++AHRLST++ D I V++ G+IVEQG H EL+S P+ YS L QL
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 983 Q 983
Q
Sbjct: 239 Q 239
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 138/241 (57%), Gaps = 4/241 (1%)
Query: 99 NIEFKNVTFSY-PSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAG 157
+I F+N+ F Y P P +I + ++ LI+RFY P G
Sbjct: 1 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXX 217
VL+D D+ WLR Q+G+V Q+ L +I++NI P
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
H FI+ L GY+T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD SE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 278 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA-YASLIRF 336
+ ++ GRT +++AHRLST++N D + V+++G++VE G H+EL+++ + Y+ L +
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 337 Q 337
Q
Sbjct: 239 Q 239
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 213 bits (543), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 152/241 (63%), Gaps = 3/241 (1%)
Query: 744 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
+I R++ F Y P P V+ + NL I+ G+ +VG SGSGKS++ LI+RFY P G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 862
+V+IDG D+ + LR ++G+V Q+ L SI DNI+ G
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
H F+S L Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 923 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982
+ ++ +GRT +++AHRLST++ D I V++ G+IVEQG H EL+S P+ YS L QL
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 983 Q 983
Q
Sbjct: 245 Q 245
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 138/241 (57%), Gaps = 4/241 (1%)
Query: 99 NIEFKNVTFSY-PSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAG 157
+I F+N+ F Y P P +I + ++ LI+RFY P G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXX 217
VL+D D+ WLR Q+G+V Q+ L +I++NI P
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
H FI+ L GY+T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD SE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 278 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA-YASLIRF 336
+ ++ GRT +++AHRLST++N D + V+++G++VE G H+EL+++ + Y+ L +
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 337 Q 337
Q
Sbjct: 245 Q 245
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 213 bits (541), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 166/268 (61%), Gaps = 4/268 (1%)
Query: 717 SVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQ 776
++F L T + D P A P+ +G IE +V F+Y + +D + + GQ+
Sbjct: 27 NMFDLLKEETEV-KDLPGAGPLRFQKGRIEFENVHFSYADGRET--LQDVSFTVMPGQTL 83
Query: 777 ALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAAS 836
ALVG SG+GKS+++ L+ RFYD ++G + IDG+DI ++ SLR IG+V Q+ LF +
Sbjct: 84 ALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDT 143
Query: 837 IFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896
I DNI YG+ H + A P Y+T VGERG++LSGG+KQR+AIAR
Sbjct: 144 IADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIAR 203
Query: 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 956
+LK P I+LLDEATSALD +E +Q +L ++ RTT++VAHRLST+ D I V++D
Sbjct: 204 TILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKD 263
Query: 957 GRIVEQGSHSELVSRPDGAYSRLLQLQH 984
G IVE+G H L+SR G Y+ + QLQ
Sbjct: 264 GCIVERGRHEALLSR-GGVYADMWQLQQ 290
Score = 183 bits (464), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/267 (38%), Positives = 147/267 (55%), Gaps = 3/267 (1%)
Query: 72 KLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXX 131
+ +++K++ + P G L G IEF+NV FSY + + +D S
Sbjct: 27 NMFDLLKEETEVKDLPGAG-PLRFQKGRIEFENVHFSYADGRETL--QDVSFTVMPGQTL 83
Query: 132 XXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATT 191
L+ RFYD ++G + +D DI + LR IG+V Q+ LF T
Sbjct: 84 ALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDT 143
Query: 192 ILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251
I +NI YG+ H I P GY TQVGERG++LSGG+KQR+AIAR
Sbjct: 144 IADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIAR 203
Query: 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ 311
+LK P I+LLDEATSALD +E +Q +L ++ RTT+VVAHRLST+ N D + VI+
Sbjct: 204 TILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKD 263
Query: 312 GQVVETGTHEELIAKAGAYASLIRFQE 338
G +VE G HE L+++ G YA + + Q+
Sbjct: 264 GCIVERGRHEALLSRGGVYADMWQLQQ 290
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 212 bits (539), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 152/241 (63%), Gaps = 3/241 (1%)
Query: 744 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
+I R++ F Y P P V+ + NL I+ G+ +VG +GSGKS++ LI+RFY P G
Sbjct: 3 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 862
+V+IDG D+ + LR ++G+V Q+ L SI DNI+ G
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
H F+S L Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 923 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982
+ ++ +GRT +++AHRLST++ D I V++ G+IVEQG H EL+S P+ YS L QL
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 983 Q 983
Q
Sbjct: 241 Q 241
Score = 175 bits (443), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 138/241 (57%), Gaps = 4/241 (1%)
Query: 99 NIEFKNVTFSY-PSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAG 157
+I F+N+ F Y P P +I + ++ LI+RFY P G
Sbjct: 3 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXX 217
VL+D D+ WLR Q+G+V Q+ L +I++NI P
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
H FI+ L GY+T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD SE ++
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 278 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA-YASLIRF 336
+ ++ GRT +++AHRLST++N D + V+++G++VE G H+EL+++ + Y+ L +
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 337 Q 337
Q
Sbjct: 241 Q 241
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 212 bits (539), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 152/241 (63%), Gaps = 3/241 (1%)
Query: 744 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
+I R++ F Y P P V+ + NL I+ G+ +VG SGSGKS++ LI+RFY P G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 862
+V+IDG D+ + LR ++G+V Q+ L SI DNI+ G
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
H F+S L Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ D+ATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 923 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982
+ ++ +GRT +++AHRLST++ D I V++ G+IVEQG H EL+S P+ YS L QL
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 983 Q 983
Q
Sbjct: 245 Q 245
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 138/241 (57%), Gaps = 4/241 (1%)
Query: 99 NIEFKNVTFSY-PSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAG 157
+I F+N+ F Y P P +I + ++ LI+RFY P G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXX 217
VL+D D+ WLR Q+G+V Q+ L +I++NI P
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
H FI+ L GY+T VGE+G LSGGQ+QRIAIARA++ NPKIL+ D+ATSALD SE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 278 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA-YASLIRF 336
+ ++ GRT +++AHRLST++N D + V+++G++VE G H+EL+++ + Y+ L +
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 337 Q 337
Q
Sbjct: 245 Q 245
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 209 bits (533), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 150/506 (29%), Positives = 253/506 (50%), Gaps = 20/506 (3%)
Query: 485 YFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRIS 544
Y S + N+ ++RR + + V +FD+E L +R+ D+ V A + +
Sbjct: 87 YCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLL--SRITYDSEQVAGATSRALV 144
Query: 545 VILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTS 604
I++ S++ + F W++SL+++ P++ A + + + A +
Sbjct: 145 SIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVT 204
Query: 605 MIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR----RSLTAGILFGISQFALH 660
A + + + V ++ Q F + QT++ +S+ ++ I+ AL
Sbjct: 205 SSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALF 264
Query: 661 ASEALILWYGVHLVGKGVS--TFSKXXXXXXXXXXTANSVAETVSLAPEIIRGGESVGSV 718
A ++ V + ++ TF+ ++ S+ E RG + ++
Sbjct: 265 A---VLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKAL---TSVTSEFQRGMAACQTL 318
Query: 719 FSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQAL 778
F +D T D +AE V GE++++ V F Y + + + I G++ AL
Sbjct: 319 FGLMDLETERDNGKYEAERVN---GEVDVKDVTFTYQGKEKPAL-SHVSFSIPQGKTVAL 374
Query: 779 VGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF 838
VG SGSGKS++ L RFYD +G + +DG D+R L +LR LV Q LF +I
Sbjct: 375 VGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIA 434
Query: 839 DNIAYGKEGXXXXXX-XXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897
+NIAY EG F+ +P T +GE G LSGGQ+QR+AIARA
Sbjct: 435 NNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494
Query: 898 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDG 957
+L++ +L+LDEATSALD ESE +Q AL+ L + +T +++AHRLSTI D I VV +G
Sbjct: 495 LLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEG 554
Query: 958 RIVEQGSHSELVSRPDGAYSRLLQLQ 983
I+E+G H++L+++ DGAY++L ++Q
Sbjct: 555 EIIERGRHADLLAQ-DGAYAQLHRIQ 579
Score = 182 bits (461), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 174/330 (52%), Gaps = 13/330 (3%)
Query: 13 IACMSWALVFWYAGV-FIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGA-FSKGKAAG 70
IA ++ V + A V IR +T G FT +FSA+ G M ++ +++ + F +G AA
Sbjct: 258 IASLALFAVLFLASVDSIRAELTPG--TFTVVFSAMFGLMRPLKALTSVTSEFQRGMAAC 315
Query: 71 YKLMEIIKQKPSIIQDPTNGRCLDE-VNGNIEFKNVTFSYPSRPD-VIIFRDFSIFFPXX 128
L ++ + + NG+ E VNG ++ K+VTF+Y + + FSI P
Sbjct: 316 QTLFGLMDLET----ERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSI--PQG 369
Query: 129 XXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF 188
L RFYD ++G + LD D++ +L LR LV+Q LF
Sbjct: 370 KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLF 429
Query: 189 ATTILENILYG-KPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247
TI NI Y + FI +P G T +GE G LSGGQ+QR+
Sbjct: 430 NDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489
Query: 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVA 307
AIARA+L++ +L+LDEATSALD SE +Q ALD L +T +V+AHRLSTI D +
Sbjct: 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEIL 549
Query: 308 VIQQGQVVETGTHEELIAKAGAYASLIRFQ 337
V+ +G+++E G H +L+A+ GAYA L R Q
Sbjct: 550 VVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 209 bits (532), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 151/241 (62%), Gaps = 3/241 (1%)
Query: 744 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
+I R++ F Y P P V+ + NL I+ G+ +VG SGSGKS++ LI+RFY P G
Sbjct: 1 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 862
+V+IDG D+ + LR ++G+V Q+ L SI DNI+ G
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
H F+S L Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 923 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982
+ ++ +GRT +++A RLST++ D I V++ G+IVEQG H EL+S P+ YS L QL
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 983 Q 983
Q
Sbjct: 239 Q 239
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 137/241 (56%), Gaps = 4/241 (1%)
Query: 99 NIEFKNVTFSY-PSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAG 157
+I F+N+ F Y P P +I + ++ LI+RFY P G
Sbjct: 1 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXX 217
VL+D D+ WLR Q+G+V Q+ L +I++NI P
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
H FI+ L GY+T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD SE ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 278 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA-YASLIRF 336
+ ++ GRT +++A RLST++N D + V+++G++VE G H+EL+++ + Y+ L +
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 337 Q 337
Q
Sbjct: 239 Q 239
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 209 bits (532), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 110/241 (45%), Positives = 151/241 (62%), Gaps = 3/241 (1%)
Query: 744 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
+I R++ F Y P P V+ + NL I+ G+ +VG SGSGKS++ LI+RFY P G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 862
+V+IDG D+ + LR ++G+V Q+ L SI DNI+ G
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
H F+S L Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 923 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982
+ ++ +GRT +++A RLST++ D I V++ G+IVEQG H EL+S P+ YS L QL
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 983 Q 983
Q
Sbjct: 245 Q 245
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 137/241 (56%), Gaps = 4/241 (1%)
Query: 99 NIEFKNVTFSY-PSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAG 157
+I F+N+ F Y P P +I + ++ LI+RFY P G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXX 217
VL+D D+ WLR Q+G+V Q+ L +I++NI P
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
H FI+ L GY+T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD SE ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 278 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA-YASLIRF 336
+ ++ GRT +++A RLST++N D + V+++G++VE G H+EL+++ + Y+ L +
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 337 Q 337
Q
Sbjct: 245 Q 245
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 205 bits (522), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 149/224 (66%), Gaps = 3/224 (1%)
Query: 748 RHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807
RHVDFAY ++ +D + + A G SG GKS++ +L+ERFY PTAG++ ID
Sbjct: 5 RHVDFAYDDSEQIL--RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 808 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXX-XXXXXXXXHGFV 866
G+ I ++L++ R +IG V Q+ A+ A +I +N+ YG EG FV
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 867 SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEAL 926
+P+ T VGERGV++SGGQ+QR+AIARA L+NP IL+LDEAT++LD+ESE ++Q+AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 927 ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 970
+ LM+GRTT+++AHRLSTI D I ++ G+I G H+ELV+
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226
Score = 182 bits (462), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 93/192 (48%), Positives = 128/192 (66%), Gaps = 1/192 (0%)
Query: 147 LIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPXXXX 205
L+ERFY P AG + +D I + L R QIG V+Q+ A+ A TI EN+ YG +
Sbjct: 47 LLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTD 106
Query: 206 XXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 265
SF+ +P+ +T+VGERGV++SGGQ+QR+AIARA L+NPKIL+LDEA
Sbjct: 107 EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA 166
Query: 266 TSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325
T++LD+ SES+VQ+ALD LM GRTT+V+AHRLSTI + D + I++GQ+ +G H EL+A
Sbjct: 167 TASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226
Query: 326 KAGAYASLIRFQ 337
YA + Q
Sbjct: 227 THPLYAKYVSEQ 238
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 195 bits (496), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 152/239 (63%), Gaps = 2/239 (0%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE V+F+YP + + K N I +G + ALVG +GSGKS++ L+ RFYD G +
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI 76
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHG 864
I GK++ + N S+R IG+V Q+ LF +I NI YGK +
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924
F+ ALP + T VG +G++LSGG++QRIAIAR +LK+P I++ DEATS+LD+++E + Q+
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 925 ALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
A+E L + RT +++AHRLSTI + I ++ G+IVE+G+H +L+ + +G Y+ + +Q
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL-KLNGEYAEMWNMQ 254
Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 134/239 (56%), Gaps = 1/239 (0%)
Query: 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGH 158
NIEF +V FSYP + + + + F P L+ RFYD G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGD 75
Query: 159 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXH 218
+ + ++ +R IG+V Q+ LF TI NILYGK +
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLY 135
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
FI LP + T VG +G++LSGG++QRIAIAR +LK+PKI++ DEATS+LD+ +E + Q
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 279 EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 337
+A++ L RT +++AHRLSTI + +++ ++ +G++VE GTH++L+ G YA + Q
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQ 254
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 147/246 (59%), Gaps = 8/246 (3%)
Query: 741 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 800
+ G ++ + V FAYP+RPDV+V + +R G+ ALVG +GSGKS+V AL++ Y PT
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 801 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGXXXXXXXXXXXX 859
G++++DGK + + + L ++ V QEP +F S+ +NIAYG +
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 860 XXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES- 918
H F+S LP Y T V E G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA S
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 919 ---ECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGA 975
E +L E+ ER R+ +L+ LS + D I ++ G I E G+H +L+ + G
Sbjct: 191 LQVEQLLYESPERY--SRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGC 247
Query: 976 YSRLLQ 981
Y ++Q
Sbjct: 248 YWAMVQ 253
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 136/247 (55%), Gaps = 11/247 (4%)
Query: 96 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPN 155
+ G ++F++V+F+YP+RPDV++ + + L++ Y P
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 156 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG---KPXXXXXXXXXXX 212
G +LLD + + R+L Q+ V QEP +F ++ ENI YG KP
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 213 XXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
HSFI+ LP GY T+V E G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA
Sbjct: 131 SGA--HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 188
Query: 273 S----ESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAG 328
S E ++ E+ +R R+ +++ LS + D + ++ G + E GTH++L+ K G
Sbjct: 189 SQLQVEQLLYESPER--YSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKG 246
Query: 329 AYASLIR 335
Y ++++
Sbjct: 247 CYWAMVQ 253
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/560 (25%), Positives = 260/560 (46%), Gaps = 21/560 (3%)
Query: 417 PEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYA 476
P W ++++ + V+ + ++A +++ R S+ KT + I L
Sbjct: 20 PYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLI---VALIG 76
Query: 477 VVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVK 536
V + F S +N +RR + +L + + H SSL+ RL D ++
Sbjct: 77 AVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRF-HTSSLIT-RLTNDVTQLQ 134
Query: 537 SAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKG--FAG 594
+ + + ++++ + ++A + ++S +++ P +VL L+ KG
Sbjct: 135 NLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVL--LFVWLTKKGNPLFR 192
Query: 595 DTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAG---IL 651
++ + + + E + +R V AF + + +E +++LRRS+ + I+
Sbjct: 193 KIQESTDEVNRVVRENLLGVRVVRAFRREE-----YENENFRKANESLRRSIISAFSLIV 247
Query: 652 FGISQFALHASEALI--LWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEII 709
F + F + +I LW+G LV S+ ++ I+
Sbjct: 248 FALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIV 307
Query: 710 RGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLR 769
R S V L+ I+ D +A + + G + +V+F Y D V+ N
Sbjct: 308 RASASAKRVLEVLNEKPAIEEAD-NALALPNVEGSVSFENVEFRYFENTDPVL-SGVNFS 365
Query: 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 829
++ G A++G +GSGKS+++ LI R DP G+V +D D+R + LK LR I V QE
Sbjct: 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQE 425
Query: 830 PALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQK 889
LF+ +I +N+ +G+E H F+ +LP Y + V G SGGQK
Sbjct: 426 TVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK 485
Query: 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVD 949
QR++IARA++K P +L+LD+ TS++D +E + + L+R +G TT ++ ++ T D
Sbjct: 486 QRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLAD 545
Query: 950 CIGVVQDGRIVEQGSHSELV 969
I V+ +G++ G+H EL+
Sbjct: 546 KILVLHEGKVAGFGTHKELL 565
Score = 166 bits (419), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 163/328 (49%), Gaps = 8/328 (2%)
Query: 13 IACMSWALVFWYAGVFIRNGVTDGGK--AFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAG 70
I M V W+ GV +RN + G A+T I+ + + + N + A+
Sbjct: 256 IVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNF--IVRASASA 313
Query: 71 YKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPD-VIIFRDFSIFFPXXX 129
+++E++ +KP+I ++ N L V G++ F+NV F Y D V+ +FS+
Sbjct: 314 KRVLEVLNEKPAI-EEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSV--KPGS 370
Query: 130 XXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA 189
LI R DP G V +D +D++T++L+ LR I V QE LF+
Sbjct: 371 LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS 430
Query: 190 TTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249
TI EN+ +G+ H FI LP GY ++V G SGGQKQR++I
Sbjct: 431 GTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490
Query: 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVI 309
ARA++K PK+L+LD+ TS++D +E + + L R G TT ++ ++ T D + V+
Sbjct: 491 ARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVL 550
Query: 310 QQGQVVETGTHEELIAKAGAYASLIRFQ 337
+G+V GTH+EL+ Y + Q
Sbjct: 551 HEGKVAGFGTHKELLEHCKPYREIYESQ 578
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 142/244 (58%), Gaps = 4/244 (1%)
Query: 741 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 800
++G ++ + V FAYP+ P+V V + + G+ ALVG +GSGKS+V AL++ Y PT
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 801 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGXXXXXXXXXXXX 859
GKV++DG+ + + + L ++ V QEP LF S +NIAYG
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 860 XXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919
H F+S P Y T VGE G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 920 CVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977
+Q L RT +L+ H+LS I +++G + EQG+H +L+ R G Y
Sbjct: 193 LRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYR 251
Query: 978 RLLQ 981
+++
Sbjct: 252 SMVE 255
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 126/242 (52%), Gaps = 3/242 (1%)
Query: 96 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPN 155
+ G ++F++V+F+YP+ P+V + + + L++ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 156 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPXXXXXXXXXXXXX 214
G VLLD + +L Q+ V QEP LF + ENI YG
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 215 XXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
H FI+ P GY T+VGE G QLSGGQ+Q +A+ARA+++ P++L+LD+ATSALDAG++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 275 SIVQEAL--DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYAS 332
VQ L RT +++ H+LS + +++G V E GTH +L+ + G Y S
Sbjct: 193 LRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Query: 333 LI 334
++
Sbjct: 253 MV 254
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 140/244 (57%), Gaps = 4/244 (1%)
Query: 741 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 800
++G ++ + V FAYP+ P+V V + + G+ ALVG +GSGKS+V AL++ Y PT
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 801 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGXXXXXXXXXXXX 859
GKV++DG+ + + + L ++ V QEP LF S +NIAYG
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 860 XXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919
H F+S P Y T VGE G QLSGGQ+Q +A+ARA+++ P +L+LD ATSALDA ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 920 CVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977
+Q L RT +L+ +LS I +++G + EQG+H +L+ R G Y
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYR 251
Query: 978 RLLQ 981
+++
Sbjct: 252 SMVE 255
Score = 149 bits (375), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 124/242 (51%), Gaps = 3/242 (1%)
Query: 96 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPN 155
+ G ++F++V+F+YP+ P+V + + + L++ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 156 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPXXXXXXXXXXXXX 214
G VLLD + +L Q+ V QEP LF + ENI YG
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 215 XXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
H FI+ P GY T+VGE G QLSGGQ+Q +A+ARA+++ P++L+LD ATSALDAG++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 275 SIVQEAL--DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYAS 332
VQ L RT +++ +LS + +++G V E GTH +L+ + G Y S
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Query: 333 LI 334
++
Sbjct: 253 MV 254
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 139/244 (56%), Gaps = 4/244 (1%)
Query: 741 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 800
++G ++ + V FAYP+ P+V V + + G+ ALVG +GSGKS+V AL++ Y PT
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 801 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGXXXXXXXXXXXX 859
GKV++DG+ + + + L ++ V QEP LF S +NIAYG
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 860 XXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919
H F+S P Y T VGE G QL+ GQ+Q +A+ARA+++ P +L+LD ATSALDA ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 920 CVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977
+Q L RT +L+ +LS I +++G + EQG+H +L+ R G Y
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYR 251
Query: 978 RLLQ 981
+++
Sbjct: 252 SMVE 255
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 123/242 (50%), Gaps = 3/242 (1%)
Query: 96 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPN 155
+ G ++F++V+F+YP+ P+V + + + L++ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 156 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPXXXXXXXXXXXXX 214
G VLLD + +L Q+ V QEP LF + ENI YG
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 215 XXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
H FI+ P GY T+VGE G QL+ GQ+Q +A+ARA+++ P++L+LD ATSALDAG++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 275 SIVQEAL--DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYAS 332
VQ L RT +++ +LS + +++G V E GTH +L+ + G Y S
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRS 252
Query: 333 LI 334
++
Sbjct: 253 MV 254
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 12/217 (5%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSL 819
+ +L + AGQ ++GASG+GKS++I + PT G V++DG+++ L+ L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 820 RLKIGLVQQEPALFAA-SIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 878
R +IG++ Q L ++ ++F N+A E V P
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 140
Query: 879 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTV 936
LSGGQKQR+AIARA+ NP +LL DEATSALD + + E L+ + R G T +
Sbjct: 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTIL 195
Query: 937 LVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
L+ H + ++ + DC+ V+ +G ++EQ + SE+ S P
Sbjct: 196 LITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 232
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 15/186 (8%)
Query: 147 LIERFYDPNAGHVLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILYGKPX 202
L+ER P G VL+D ++ TL +L R QIG++ Q L ++ T+ N+
Sbjct: 53 LLER---PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109
Query: 203 XXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLL 262
S + G + LSGGQKQR+AIARA+ NPK+LL
Sbjct: 110 DNTPKDEVKRRVTELLSLV-----GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLC 164
Query: 263 DEATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGT 319
DEATSALD + + E L + +G T +++ H + ++ + D VAVI G+++E T
Sbjct: 165 DEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 224
Query: 320 HEELIA 325
E+ +
Sbjct: 225 VSEVFS 230
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 116/217 (53%), Gaps = 12/217 (5%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSL 819
+ +L + AGQ ++GASG+GKS++I + PT G V++DG+++ L+ L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 820 RLKIGLVQQEPALFAA-SIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 878
R +IG++ Q L ++ ++F N+A E V P
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 163
Query: 879 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTV 936
LSGGQKQR+AIARA+ NP +LL D+ATSALD + + E L+ + R G T +
Sbjct: 164 -----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTIL 218
Query: 937 LVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
L+ H + ++ + DC+ V+ +G ++EQ + SE+ S P
Sbjct: 219 LITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 15/186 (8%)
Query: 147 LIERFYDPNAGHVLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILYGKPX 202
L+ER P G VL+D ++ TL +L R QIG++ Q L ++ T+ N+
Sbjct: 76 LLER---PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 132
Query: 203 XXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLL 262
S + G + LSGGQKQR+AIARA+ NPK+LL
Sbjct: 133 DNTPKDEVKRRVTELLSLV-----GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLC 187
Query: 263 DEATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGT 319
D+ATSALD + + E L + +G T +++ H + ++ + D VAVI G+++E T
Sbjct: 188 DQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
Query: 320 HEELIA 325
E+ +
Sbjct: 248 VSEVFS 253
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 116/216 (53%), Gaps = 19/216 (8%)
Query: 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824
+ NL+I+ G+ AL+G SGSGKS+++ I Y PT+GK+ D KD+ L K +G
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRN--VG 78
Query: 825 LVQQEPALFA-ASIFDNIAYG----KEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGE 879
LV Q AL+ +++ NIA+ K H + L N Y
Sbjct: 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH--IDKLLNRYPW---- 132
Query: 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVL 937
QLSGGQ+QR+AIARA++K P +LLLDE S LDA ++ L+RL + G TTV
Sbjct: 133 ---QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189
Query: 938 VAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
V H + + D I V+++G I++ G+ E+ +P
Sbjct: 190 VTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 92/183 (50%), Gaps = 19/183 (10%)
Query: 152 YDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG----KPXXXXX 206
Y P +G + D D+ L + +GLV Q AL+ T+ +NI + K
Sbjct: 53 YKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEI 110
Query: 207 XXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT 266
H I L N Y Q LSGGQ+QR+AIARA++K P++LLLDE
Sbjct: 111 DKKVREVAKMLH--IDKLLNRYPWQ-------LSGGQQQRVAIARALVKEPEVLLLDEPL 161
Query: 267 SALDAGSESIVQEALDRLM--VGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
S LDA V+ L RL +G TTV V H + + D +AVI++G++++ GT +E+
Sbjct: 162 SNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
Query: 324 IAK 326
K
Sbjct: 222 YYK 224
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 12/217 (5%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSL 819
+ +L + AGQ ++GASG+GKS++I + PT G V++DG+++ L+ L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 820 RLKIGLVQQEPALFAA-SIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 878
R +IG + Q L ++ ++F N+A E V P
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 163
Query: 879 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTV 936
LSGGQKQR+AIARA+ NP +LL D+ATSALD + + E L+ + R G T +
Sbjct: 164 -----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTIL 218
Query: 937 LVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
L+ H ++ + DC+ V+ +G ++EQ + SE+ S P
Sbjct: 219 LITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 91/186 (48%), Gaps = 15/186 (8%)
Query: 147 LIERFYDPNAGHVLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILYGKPX 202
L+ER P G VL+D ++ TL +L R QIG + Q L ++ T+ N+
Sbjct: 76 LLER---PTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLEL 132
Query: 203 XXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLL 262
S + G + LSGGQKQR+AIARA+ NPK+LL
Sbjct: 133 DNTPKDEVKRRVTELLSLV-----GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLC 187
Query: 263 DEATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGT 319
D+ATSALD + + E L + +G T +++ H ++ + D VAVI G+++E T
Sbjct: 188 DQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDT 247
Query: 320 HEELIA 325
E+ +
Sbjct: 248 VSEVFS 253
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 19/240 (7%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
I +R+ F + +R D I G A+VG G GKSS+++ + D G V
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHG 864
I G + V Q+ + S+ +NI +G +
Sbjct: 63 AIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE-SECVLQ 923
LP+ +T +GE+GV LSGGQKQR+++ARAV N I L D+ SA+DA + + +
Sbjct: 110 L-EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 924 EAL--ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 981
+ + +++ +T +LV H +S + VD I V+ G+I E GS+ EL++R DGA++ L+
Sbjct: 169 NVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLR 227
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Query: 174 LRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVG 233
++ + V Q+ + ++ ENIL+G + +LP+G T++G
Sbjct: 64 IKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD-LEILPSGDRTEIG 122
Query: 234 ERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL---DRLMVGRTT 290
E+GV LSGGQKQR+++ARA+ N I L D+ SA+DA + E + ++ +T
Sbjct: 123 EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTR 182
Query: 291 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 335
++V H +S + VD + V+ G++ E G+++EL+A+ GA+A +R
Sbjct: 183 ILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 31/227 (13%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSL 819
V K N+ IR G+ ++G SGSGKS+ + + D G+++IDG +++ NL +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 820 RLKIGLVQQEPALFA-ASIFDNIAYGK-----------EGXXXXXXXXXXXXXXXHGFVS 867
R ++G+V Q LF ++ +NI E H +
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-- 135
Query: 868 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 927
P++ LSGGQ QR+AIARA+ P I+L DE TSALD E + ++
Sbjct: 136 --PDS-----------LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 182
Query: 928 RLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
+L G T V+V H + R V D + + G I+E+G +L RP
Sbjct: 183 QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 229
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 153 DPNAGHVLLDNVDIKT--LQLRWLRDQIGLVNQEPALFA-TTILENILYGKPXXXXXXXX 209
D + G +++D +++K L +R+++G+V Q LF T+L NI
Sbjct: 54 DFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP----MKVRK 109
Query: 210 XXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
+ L G + LSGGQ QR+AIARA+ PKI+L DE TSAL
Sbjct: 110 WPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 169
Query: 270 DAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
D V + +L G T VVV H + R V D V + G ++E G E+L +
Sbjct: 170 DPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 31/227 (13%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSL 819
V K N+ IR G+ ++G SGSGKS+ + + D G+++IDG +++ NL +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 820 RLKIGLVQQEPALFA-ASIFDNIAYGK-----------EGXXXXXXXXXXXXXXXHGFVS 867
R ++G+V Q LF ++ +NI E H +
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-- 156
Query: 868 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 927
P++ LSGGQ QR+AIARA+ P I+L DE TSALD E + ++
Sbjct: 157 --PDS-----------LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 203
Query: 928 RLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
+L G T V+V H + R V D + + G I+E+G +L RP
Sbjct: 204 QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 153 DPNAGHVLLDNVDIKT--LQLRWLRDQIGLVNQEPALFA-TTILENILYGKPXXXXXXXX 209
D + G +++D +++K L +R+++G+V Q LF T+L NI
Sbjct: 75 DFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP----MKVRK 130
Query: 210 XXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
+ L G + LSGGQ QR+AIARA+ PKI+L DE TSAL
Sbjct: 131 WPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190
Query: 270 DAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
D V + +L G T VVV H + R V D V + G ++E G E+L +
Sbjct: 191 DPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 112/214 (52%), Gaps = 14/214 (6%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822
+ +L++ +G+ ++G +G+GK+ + LI F+ P +G++++DGKD+ +L +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV--TDLSPEKHD 73
Query: 823 IGLVQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERG 881
I V Q +LF ++ N+ +G +A + +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG--------MRMKKIKDPKRVLDTARDLKIEHLLDRNP 125
Query: 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRGRTTVL-VA 939
+ LSGG++QR+A+ARA++ NP ILLLDE SALD ++ +E L L + + TVL +
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT 185
Query: 940 HRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRP 972
H + R D I VV DG++++ G E+ +P
Sbjct: 186 HDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 147 LIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPXXXX 205
LI F+ P++G +LLD D+ L + I V Q +LF + +N+ +G
Sbjct: 45 LIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI 102
Query: 206 XXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 265
LL T LSGG++QR+A+ARA++ NPKILLLDE
Sbjct: 103 KDPKRVLDTARDLKIEHLLDRNPLT--------LSGGEQQRVALARALVTNPKILLLDEP 154
Query: 266 TSALDAGSESIVQEALDRLMVGR--TTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEE 322
SALD ++ +E L L T + + H + R D +AV+ G++++ G EE
Sbjct: 155 LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEE 214
Query: 323 LIAKA--GAYASLIRFQEMVRNR 343
+ K G AS + F+ +++ R
Sbjct: 215 IFEKPVEGRVASFVGFENVLKGR 237
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 115/232 (49%), Gaps = 13/232 (5%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE V+ YP V + + +IR G+ L+G SGSGK++++ LI PT G V
Sbjct: 15 IEFVGVEKIYPGGARSV--RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXH 863
I GK R +L + +GLV Q ALF +++DN+++G
Sbjct: 73 WIGGK--RVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 923
F+ A + P +LSGGQ+QR+A+ARA+ P +LL DE +A+D + L+
Sbjct: 131 RFMRLESYANRFPH-----ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185
Query: 924 EALERLMR--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
+ ++ G T+V V H + + D + V+ +G + + G+ E+ +P
Sbjct: 186 TFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 15/188 (7%)
Query: 147 LIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPXXXX 205
LI P G V + + L + + +GLV Q ALF T+ +N+ +G
Sbjct: 60 LIAGLERPTKGDVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRV 117
Query: 206 XXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 265
F+ L Y+ + +LSGGQ+QR+A+ARA+ P++LL DE
Sbjct: 118 PKDEMDARVRELLRFMRL--ESYANRFPH---ELSGGQQQRVALARALAPRPQVLLFDEP 172
Query: 266 TSALDAGS----ESIVQEALDRLMVGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTH 320
+A+D + V++ D + G T+V V H + + D V V+ +G V + GT
Sbjct: 173 FAAIDTQIRRELRTFVRQVHDEM--GVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTP 230
Query: 321 EELIAKAG 328
EE+ K G
Sbjct: 231 EEVYEKPG 238
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 13/227 (5%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822
++ +L I G+ + G +GSGKS+++ ++ +PT+G V+ DG+ R +R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE---RKKGYEIRRN 79
Query: 823 IGLVQQEPA--LFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGER 880
IG+ Q P FA +FD +A+ + FV +++K V
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAME-FVGLDFDSFKDRVP-- 136
Query: 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVA 939
LSGG+K+R+AIA ++ P IL+LDE LD E + L +E+ G+T +L++
Sbjct: 137 -FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195
Query: 940 HRLST-IRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY--SRLLQLQ 983
H + T I VD + V++ G+ V G+ E + + D + S++L ++
Sbjct: 196 HDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMR 242
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 11/178 (6%)
Query: 153 DPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPA--LFATTILENILYGKPXXXXXXXXX 210
+P +G VL D K ++R IG+ Q P FA + + + +
Sbjct: 58 EPTSGDVLYDGERKKGYEIRR---NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV 114
Query: 211 XXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD 270
F+ L + + +V LSGG+K+R+AIA ++ P IL+LDE LD
Sbjct: 115 PLVKKAME-FVGLDFDSFKDRVP---FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD 170
Query: 271 AGSESIVQEALDRL-MVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326
++ + +++ +G+T ++++H + T+ N VD V V+++G+ V GT E + K
Sbjct: 171 REGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 13/227 (5%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822
++ +L I G+ + G +GSGKS+++ ++ +PT+G V+ DG+ R +R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE---RKKGYEIRRN 81
Query: 823 IGLVQQEPA--LFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGER 880
IG+ Q P FA +FD +A+ + FV +++K V
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAME-FVGLDFDSFKDRVP-- 138
Query: 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVA 939
LSGG+K+R+AIA ++ P IL+LDE LD E + L +E+ G+T +L++
Sbjct: 139 -FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 197
Query: 940 HRLST-IRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY--SRLLQLQ 983
H + T I VD + V++ G+ V G+ E + + D + S++L ++
Sbjct: 198 HDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMR 244
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 11/178 (6%)
Query: 153 DPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPA--LFATTILENILYGKPXXXXXXXXX 210
+P +G VL D K ++R IG+ Q P FA + + + +
Sbjct: 60 EPTSGDVLYDGERKKGYEIRR---NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV 116
Query: 211 XXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD 270
F+ L + + +V LSGG+K+R+AIA ++ P IL+LDE LD
Sbjct: 117 PLVKKAME-FVGLDFDSFKDRVP---FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD 172
Query: 271 AGSESIVQEALDRL-MVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326
++ + +++ +G+T ++++H + T+ N VD V V+++G+ V GT E + K
Sbjct: 173 REGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 88.6 bits (218), Expect = 2e-17, Method: Composition-based stats.
Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 29/233 (12%)
Query: 745 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
I+L++V Y +++ K+ NL I+ G+ ++ G SGSGKS+ + +I PT G+
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 804 VMIDGKDIRRLNLKSL----RLKIGLVQQEPALFAA-SIFDNI----------AYGKEGX 848
V ID L+ L R KIG V Q+ L + +N+ A E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 849 XXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD 908
F + PN QLSGGQ+QR+AIARA+ NP I+L D
Sbjct: 122 RKRALECLKXAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 909 EATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRI 959
E T ALD+++ + + L++L G+T V+V H ++ R + I ++DG +
Sbjct: 171 EPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 154 PNAGHVLLDNVDIKTLQ----LRWLRDQIGLVNQEPALFAT-TILENILYGKPXXXXXXX 208
P G V +DN+ L + RD+IG V Q+ L T LEN+ P
Sbjct: 57 PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL--PLIFKYRG 114
Query: 209 XXXXXXXXXHSFITLLPNGYSTQ-VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267
+ L + + QLSGGQ+QR+AIARA+ NP I+L DE T
Sbjct: 115 AXSGEERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTG 174
Query: 268 ALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQV 314
ALD+ + + + L +L G+T VVV H ++ R + + ++ G+V
Sbjct: 175 ALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 104/207 (50%), Gaps = 13/207 (6%)
Query: 778 LVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-AS 836
L+G +G+GKS + LI P G+V ++G DI L R IG V Q+ ALF S
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPHLS 86
Query: 837 IFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896
++ NIAYG ++ L + + +LSGG++QR+A+AR
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHL-------LDRKPARLSGGERQRVALAR 139
Query: 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVL--VAHRL-STIRGVDCIGV 953
A++ P +LLLDE SA+D +++ VL E L + R + V H L D + V
Sbjct: 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV 199
Query: 954 VQDGRIVEQGSHSELVSRPDGAYSRLL 980
+ +GRIVE+G EL S +G + L
Sbjct: 200 MLNGRIVEKGKLKELFSAKNGEVAEFL 226
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 16/194 (8%)
Query: 147 LIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPXXXX 205
LI P+ G V L+ DI L R IG V Q+ ALF ++ NI YG
Sbjct: 43 LIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLSVYRNIAYGLRNVER 100
Query: 206 XXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 265
G + + + +LSGG++QR+A+ARA++ P++LLLDE
Sbjct: 101 VERDRRVREMAEKL-------GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153
Query: 266 TSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN----VDTVAVIQQGQVVETGTHE 321
SA+D ++ ++ E L R + V + H + D VAV+ G++VE G +
Sbjct: 154 LSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLK 212
Query: 322 ELI-AKAGAYASLI 334
EL AK G A +
Sbjct: 213 ELFSAKNGEVAEFL 226
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 29/233 (12%)
Query: 745 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
I+L++V Y +++ K+ NL I+ G+ +++G SGSGKS+++ +I PT G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 804 VMIDGKDIRRLNLKSL----RLKIGLVQQEPALFAA-SIFDNI----------AYGKEGX 848
V ID L+ L R KIG V Q+ L + +N+ A E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 849 XXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD 908
F + PN QLSGGQ+QR+AIARA+ NP I+L D
Sbjct: 122 RKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 909 EATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRI 959
+ T ALD+++ + + L++L G+T V+V H ++ R + I ++DG +
Sbjct: 171 QPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 154 PNAGHVLLDNVDIKTLQLRWL----RDQIGLVNQEPALFAT-TILENILYGKPXXXXXXX 208
P G V +DN+ L L RD+IG V Q+ L T LEN+ P
Sbjct: 57 PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL--PLIFKYRG 114
Query: 209 XXXXXXXXXHSFITLLPNGYSTQ-VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267
+ L + + QLSGGQ+QR+AIARA+ NP I+L D+ T
Sbjct: 115 AMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTG 174
Query: 268 ALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQV 314
ALD+ + + + L +L G+T VVV H ++ R + + ++ G+V
Sbjct: 175 ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 15/217 (6%)
Query: 766 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 825
NL I+ G+ L+G SG GK++ + +I +PT G++ +D+ L K I +
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR--NISM 88
Query: 826 VQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGF--VSALPNAYKTPVGERGV 882
V Q A++ ++++NIA+ + + L N Y
Sbjct: 89 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 141
Query: 883 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR--TTVLVAH 940
QLSGGQ+QR+A+ARA++ P +LL+DE S LDA+ ++ +++L + TT+ V H
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 941 -RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 976
++ + D I V+ G++++ GS +E+ RP+ +
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 238
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAH 295
QLSGGQ+QR+A+ARA++ P +LL+DE S LDA ++ + +L + TT+ V H
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 296 -RLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA--YASLIRFQEM 339
++ + D +AV+ +GQ+++ G+ E+ + + A+ I EM
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEM 248
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 29/233 (12%)
Query: 745 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
++L++V Y +++ K+ NL I+ G+ +++G SGSGKS+++ +I PT G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 804 VMIDGKDIRRLNLKSL----RLKIGLVQQEPALFAA-SIFDNI----------AYGKEGX 848
V ID L+ L R KIG V Q+ L + +N+ A E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 849 XXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD 908
F + PN QLSGGQ+QR+AIARA+ NP I+L D
Sbjct: 122 RKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 909 EATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRI 959
+ T ALD+++ + + L++L G+T V+V H ++ R + I ++DG +
Sbjct: 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 154 PNAGHVLLDNVDIKTLQLRWL----RDQIGLVNQEPALFAT-TILENILYGKPXXXXXXX 208
P G V +DN+ L L RD+IG V Q+ L T LEN+ P
Sbjct: 57 PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL--PLIFKYRG 114
Query: 209 XXXXXXXXXHSFITLLPNGYSTQ-VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267
+ L + + QLSGGQ+QR+AIARA+ NP I+L D+ T
Sbjct: 115 AMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTW 174
Query: 268 ALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQV 314
ALD+ + + + L +L G+T VVV H ++ R + + ++ G+V
Sbjct: 175 ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 15/217 (6%)
Query: 766 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 825
NL I+ G+ L+G SG GK++ + +I +PT G++ +D+ L K I +
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR--NISM 87
Query: 826 VQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGF--VSALPNAYKTPVGERGV 882
V Q A++ ++++NIA+ + + L N Y
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 140
Query: 883 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR--TTVLVAH 940
QLSGGQ+QR+A+ARA++ P +LL+DE S LDA+ ++ +++L + TT+ V H
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 941 -RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 976
++ + D I V+ G++++ GS +E+ RP+ +
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAH 295
QLSGGQ+QR+A+ARA++ P +LL+DE S LDA ++ + +L + TT+ V H
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 296 -RLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA--YASLIRFQEM 339
++ + D +AV+ +GQ+++ G+ E+ + + A+ I EM
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGAPEM 247
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 106/214 (49%), Gaps = 11/214 (5%)
Query: 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 826
+ ++ G+ AL+G SG GK++ + ++ Y PT+G++ D D+ ++ ++G+V
Sbjct: 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVNDIPPKYREVGMV 80
Query: 827 QQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLS 885
Q AL+ ++F+NIA+ A + + QLS
Sbjct: 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEI-----ARKLLIDNLLDRKPTQLS 135
Query: 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAH-RL 942
GGQ+QR+A+ARA++K P +LL DE S LDA +++ ++ L + G T+V V H +
Sbjct: 136 GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195
Query: 943 STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 976
+ I V G++V+ G+ E+ P +
Sbjct: 196 EAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMF 229
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 11/176 (6%)
Query: 152 YDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPXXXXXXXXX 210
Y P +G + D+V + + ++ ++G+V Q AL+ T+ ENI + P
Sbjct: 53 YKPTSGEIYFDDVLVNDIPPKY--REVGMVFQNYALYPHMTVFENIAF--PLRARRISKD 108
Query: 211 XXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD 270
LL + + QLSGGQ+QR+A+ARA++K PK+LL DE S LD
Sbjct: 109 EVEKRVVEIARKLL---IDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
Query: 271 AGSESIVQEALDRLM--VGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
A I++ + L +G T+V V H + + +AV QG++V+ GT +E+
Sbjct: 166 ANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 26/240 (10%)
Query: 739 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 798
+T G+ L +F+ P V KD N +I GQ A+ G++G+GK+S++ +I +
Sbjct: 33 KTSNGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89
Query: 799 PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI---AYGKEGXXXXXXXX 855
P+ GK+ G+ I Q + +I +NI +Y +
Sbjct: 90 PSEGKIKHSGR-------------ISFCSQNSWIMPGTIKENIIGVSYDE-----YRYRS 131
Query: 856 XXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 915
+S +GE G+ LSGGQ+ RI++ARAV K+ + LLD LD
Sbjct: 132 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
Query: 916 AESEC-VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 973
+E + + + +LM +T +LV ++ ++ D I ++ +G G+ SEL + RPD
Sbjct: 192 VLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPD 251
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 232 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTT 290
+GE G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E I + + +LM +T
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 291 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323
++V ++ ++ D + ++ +G GT EL
Sbjct: 213 ILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 16/214 (7%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
V KD N +I GQ A+ G++G+GK+S++ +I +P+ GK+ G+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 822 KIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERG 881
I Q + +I +NI +G +S +GE G
Sbjct: 71 -ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED-ISKFAEKDNIVLGEGG 128
Query: 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVLVAH 940
+ LSGGQ+ RI++ARAV K+ + LLD LD +E + + + +LM +T +LV
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 941 RLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 973
++ ++ D I ++ +G G+ SEL + +PD
Sbjct: 189 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 222
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 2/148 (1%)
Query: 177 QIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERG 236
+I +Q + TI ENI++G I+ + +GE G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED-ISKFAEKDNIVLGEGG 128
Query: 237 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTTVVVAH 295
+ LSGGQ+ RI++ARA+ K+ + LLD LD +E I + + +LM +T ++V
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 296 RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
++ ++ D + ++ +G GT EL
Sbjct: 189 KMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 16/214 (7%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
V KD N +I GQ A+ G++G+GK+S++ +I +P+ GK+ G+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 82
Query: 822 KIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERG 881
I Q + +I +NI +G +S +GE G
Sbjct: 83 -ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED-ISKFAEKDNIVLGEGG 140
Query: 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVLVAH 940
+ LSGGQ+ RI++ARAV K+ + LLD LD +E + + + +LM +T +LV
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
Query: 941 RLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 973
++ ++ D I ++ +G G+ SEL + +PD
Sbjct: 201 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 234
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 232 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTT 290
+GE G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E I + + +LM +T
Sbjct: 136 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 195
Query: 291 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323
++V ++ ++ D + ++ +G GT EL
Sbjct: 196 ILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 26/240 (10%)
Query: 739 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 798
+T G+ L +F+ P V KD N +I GQ A+ G++G+GK+S++ +I +
Sbjct: 33 KTSNGDDSLFFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89
Query: 799 PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI---AYGKEGXXXXXXXX 855
P+ GK+ G+ I Q + +I +NI +Y +
Sbjct: 90 PSEGKIKHSGR-------------ISFCSQNSWIMPGTIKENIIGVSYDE-----YRYRS 131
Query: 856 XXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 915
+S +GE G+ LSGGQ+ RI++ARAV K+ + LLD LD
Sbjct: 132 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
Query: 916 AESEC-VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 973
+E + + + +LM +T +LV ++ ++ D I ++ +G G+ SEL + RPD
Sbjct: 192 VLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPD 251
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 232 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTT 290
+GE G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E I + + +LM +T
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 291 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323
++V ++ ++ D + ++ +G GT EL
Sbjct: 213 ILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 16/227 (7%)
Query: 749 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808
+V F++ V K+ NL I G+ A+ G++GSGK+S++ LI + + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 809 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSA 868
+ + Q + +I +NI +G ++
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQD-ITK 145
Query: 869 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQEALE 927
T +GE GV LSGGQ+ RI++ARAV K+ + LLD LD E V + +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 928 RLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 973
+LM +T +LV ++ +R D I ++ G G+ SEL S RPD
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 252
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 2/148 (1%)
Query: 177 QIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERG 236
++ +Q + TI ENI++G IT +T +GE G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQD-ITKFAEQDNTVLGEGG 158
Query: 237 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA-GSESIVQEALDRLMVGRTTVVVAH 295
V LSGGQ+ RI++ARA+ K+ + LLD LD E + + + +LM +T ++V
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 296 RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
++ +R D + ++ QG GT EL
Sbjct: 219 KMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 19/237 (8%)
Query: 739 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 798
+T G+ L +F+ P V KD N +I GQ A+ G++G+GK+S++ +I +
Sbjct: 33 KTSNGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89
Query: 799 PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXX 858
P+ GK+ G+ I Q + +I +NI G
Sbjct: 90 PSEGKIKHSGR-------------ISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKA 136
Query: 859 XXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 918
+S +GE G+ LSGGQ+ RI++ARAV K+ + LLD LD +
Sbjct: 137 CQLEED-ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 195
Query: 919 EC-VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 973
E + + + +LM +T +LV ++ ++ D I ++ +G G+ SEL + +PD
Sbjct: 196 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 252
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 232 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTT 290
+GE G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E I + + +LM +T
Sbjct: 154 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 213
Query: 291 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323
++V ++ ++ D + ++ +G GT EL
Sbjct: 214 ILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 16/227 (7%)
Query: 749 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808
+V F++ V K+ NL I G+ A+ G++GSGK+S++ LI + + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 809 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSA 868
+ + Q + +I +NI +G ++
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQD-ITK 145
Query: 869 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQEALE 927
T +GE GV LSGGQ+ RI++ARAV K+ + LLD LD E V + +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 928 RLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 973
+LM +T +LV ++ +R D I ++ G G+ SEL S RPD
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 252
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 9/174 (5%)
Query: 177 QIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERG 236
++ +Q + TI ENI++G IT +T +GE G
Sbjct: 100 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQD-ITKFAEQDNTVLGEGG 158
Query: 237 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA-GSESIVQEALDRLMVGRTTVVVAH 295
V LSGGQ+ RI++ARA+ K+ + LLD LD E + + + +LM +T ++V
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 296 RLSTIRNVDTVAVIQQGQVVETGTHEEL-------IAKAGAYASLIRFQEMVRN 342
++ +R D + ++ QG GT EL +K Y + +F E R+
Sbjct: 219 KMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEERRS 272
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 30/229 (13%)
Query: 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR---RLNL 816
VV + N+ I G+ ++G SG+GK++ + +I P+ G++ D + + +L +
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 817 KSLRLKIGLVQQEPALFAA-SIFDNIAY-------GKEGXXXXXXXXXXXXXXXHGFVSA 868
KIG+V Q AL+ + F+NIA+ KE H ++
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE-EIRKRVEEVAKILDIHHVLNH 136
Query: 869 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE----SECVLQE 924
P +LSGGQ+QR+A+ARA++K+P++LLLDE S LDA + +++E
Sbjct: 137 FPR-----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185
Query: 925 ALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
RL G T ++V+H + I + D +GV+ G++V+ G +L P
Sbjct: 186 VQSRL--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 62/91 (68%), Gaps = 7/91 (7%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDA----GSESIVQEALDRLMVGRTTVVV 293
+LSGGQ+QR+A+ARA++K+P +LLLDE S LDA + ++V+E RL G T +VV
Sbjct: 140 ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL--GVTLLVV 197
Query: 294 AHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
+H + I + D V V+ +G++V+ G E+L
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 16/227 (7%)
Query: 749 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808
+V F++ V K+ NL I G+ A+ G++GSGK+S++ LI + + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 809 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSA 868
+ + Q + +I +NI G ++
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQD-ITK 145
Query: 869 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQEALE 927
T +GE GV LSGGQ+ RI++ARAV K+ + LLD LD E V + +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 928 RLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 973
+LM +T +LV ++ +R D I ++ G G+ SEL S RPD
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 252
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 221 ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA-GSESIVQE 279
IT +T +GE GV LSGGQ+ RI++ARA+ K+ + LLD LD E + +
Sbjct: 143 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Query: 280 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323
+ +LM +T ++V ++ +R D + ++ QG GT EL
Sbjct: 203 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 16/227 (7%)
Query: 749 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808
+V F++ V K+ NL I G+ A+ G++GSGK+S++ LI + + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 809 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSA 868
+ + Q + +I +NI G ++
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQD-ITK 145
Query: 869 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQEALE 927
T +GE GV LSGGQ+ RI++ARAV K+ + LLD LD E V + +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 928 RLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 973
+LM +T +LV ++ +R D I ++ G G+ SEL S RPD
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 252
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 221 ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA-GSESIVQE 279
IT +T +GE GV LSGGQ+ RI++ARA+ K+ + LLD LD E + +
Sbjct: 143 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 202
Query: 280 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323
+ +LM +T ++V ++ +R D + ++ QG GT EL
Sbjct: 203 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 110/219 (50%), Gaps = 14/219 (6%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK--DIRRLNLKSLR 820
K N+ I+ G+ A++G +G GKS++ P++G+++ D K D R + LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 821 LKIGLVQQEP--ALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 878
IG+V Q+P LF+AS++ ++++G +AL +
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD------NALKRTGIEHLK 137
Query: 879 ERGVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTT 935
++ LS GQK+R+AIA ++ P +L+LDE T+ LD + + L + + G T
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITI 197
Query: 936 VLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 973
++ H + + D + V+++GR++ QG+ E+ + +
Sbjct: 198 IIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 236
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 12/180 (6%)
Query: 154 PNAGHVLLDN--VDIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPXXXXXXXX 209
P++G +L DN +D + LR+ IG+V Q+P LF+ ++ +++ +G
Sbjct: 60 PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDE 119
Query: 210 XXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
L G + LS GQK+R+AIA ++ PK+L+LDE T+ L
Sbjct: 120 IRKRVDN-----ALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 270 DAGSESIVQEALDRLM--VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK 326
D S + + L + +G T ++ H + + D V V+++G+V+ G +E+ A+
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 818
+VVV KD NL I G+ VG SG GKS+++ +I T+G + I K R +
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK--RMNDTPP 72
Query: 819 LRLKIGLVQQEPALFAA-SIFDNIAYG-------KEGXXXXXXXXXXXXXXXHGFVSALP 870
+G+V Q AL+ S+ +N+++G KE H + P
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKP 131
Query: 871 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 930
A LSGGQ+QR+AI R ++ P++ LLDE S LDA ++ + RL
Sbjct: 132 KA-----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180
Query: 931 R--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
+ GRT + V H ++ + D I V+ GR+ + G EL P
Sbjct: 181 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAH- 295
LSGGQ+QR+AI R ++ P + LLDE S LDA ++ + RL +GRT + V H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 296 RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
++ + D + V+ G+V + G EL
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 28/239 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
++L++V A+ +VVV KD NL I G+ VG SG GKS+++ +I T+G +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYG-------KEGXXXXXXXXX 856
I K R + +G+V Q AL+ S+ +N+++G KE
Sbjct: 61 FIGEK--RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 857 XXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
H + P A LSGGQ+QR+AI R ++ P++ LLDE S LDA
Sbjct: 119 EVLQLAH-LLDRKPKA-----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 917 ESECVLQEALERLMR--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
++ + RL + GRT + V H ++ + D I V+ GR+ + G EL P
Sbjct: 167 ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAH- 295
LSGGQ+QR+AI R ++ P + LLDE S LDA ++ + RL +GRT + V H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 296 RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
++ + D + V+ G+V + G EL
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 30/229 (13%)
Query: 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR---RLNL 816
VV + N+ I G+ ++G SG+GK++ + +I P+ G++ D + + +L +
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 817 KSLRLKIGLVQQEPALFAA-SIFDNIAY-------GKEGXXXXXXXXXXXXXXXHGFVSA 868
KIG+V Q AL+ + F+NIA+ KE H ++
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE-EIRKRVEEVAKILDIHHVLNH 136
Query: 869 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE----SECVLQE 924
P +LSG Q+QR+A+ARA++K+P++LLLDE S LDA + +++E
Sbjct: 137 FPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185
Query: 925 ALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
RL G T ++V+H + I + D +GV+ G++V+ G +L P
Sbjct: 186 VQSRL--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 61/91 (67%), Gaps = 7/91 (7%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDA----GSESIVQEALDRLMVGRTTVVV 293
+LSG Q+QR+A+ARA++K+P +LLLDE S LDA + ++V+E RL G T +VV
Sbjct: 140 ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL--GVTLLVV 197
Query: 294 AHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
+H + I + D V V+ +G++V+ G E+L
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 23/217 (10%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
V KD N +I GQ A+ G++G+GK+S++ +I +P+ GK+ G+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 822 KIGLVQQEPALFAASIFDNI---AYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 878
I Q + +I +NI +Y + +S +G
Sbjct: 71 -ISFCSQFSWIMPGTIKENIIGVSYDE-----YRYRSVIKACQLEEDISKFAEKDNIVLG 124
Query: 879 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVL 937
E G+ LSGGQ+ RI++ARAV K+ + LLD LD +E + + + +LM +T +L
Sbjct: 125 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 184
Query: 938 VAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 973
V ++ ++ D I ++ +G G+ SEL + +PD
Sbjct: 185 VTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 221
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 232 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTT 290
+GE G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E I + + +LM +T
Sbjct: 123 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 182
Query: 291 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323
++V ++ ++ D + ++ +G GT EL
Sbjct: 183 ILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 28/239 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
++L++V A+ +VVV KD NL I G+ VG SG GKS+++ +I T+G +
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYG-------KEGXXXXXXXXX 856
I K R + +G+V Q AL+ S+ +N+++G KE
Sbjct: 61 FIGEK--RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 118
Query: 857 XXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
H + P A LSGGQ+QR+AI R ++ P++ LLD+ S LDA
Sbjct: 119 EVLQLAH-LLDRKPKA-----------LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA 166
Query: 917 ESECVLQEALERLMR--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
++ + RL + GRT + V H ++ + D I V+ GR+ + G EL P
Sbjct: 167 ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAH- 295
LSGGQ+QR+AI R ++ P + LLD+ S LDA ++ + RL +GRT + V H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 296 RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
++ + D + V+ G+V + G EL
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 105/230 (45%), Gaps = 23/230 (10%)
Query: 749 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808
+V F++ V K+ NL I G+ A+ G++GSGK+S++ LI + + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 809 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI---AYGKEGXXXXXXXXXXXXXXXHGF 865
+ + Q + +I +NI +Y +
Sbjct: 100 R-------------VSFCSQFSWIMPGTIKENIIGVSYDE-----YRYKSVVKACQLQQD 141
Query: 866 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQE 924
++ T +GE GV LSGGQ+ RI++ARAV K+ + LLD LD E V +
Sbjct: 142 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 201
Query: 925 ALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 973
+ +LM +T +LV ++ +R D I ++ G G+ SEL S RPD
Sbjct: 202 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 251
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 221 ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA-GSESIVQE 279
IT +T +GE GV LSGGQ+ RI++ARA+ K+ + LLD LD E + +
Sbjct: 142 ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 201
Query: 280 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL-------IAKAGAYAS 332
+ +LM +T ++V ++ +R D + ++ QG GT EL +K Y +
Sbjct: 202 CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDT 261
Query: 333 LIRFQEMVRN 342
+F E R+
Sbjct: 262 FDQFTEERRS 271
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 16/214 (7%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
V KD N +I GQ A+ G++G+GK+S++ +I +P+ GK+ G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 822 KIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERG 881
+I Q + +I +NI +G +S +GE G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED-ISKFAEKDNIVLGEGG 158
Query: 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVLVAH 940
+ LS GQ+ +I++ARAV K+ + LLD LD +E + + + +LM +T +LV
Sbjct: 159 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 941 RLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 973
++ ++ D I ++ +G G+ SEL + +PD
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 252
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 2/148 (1%)
Query: 177 QIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERG 236
+I +Q + TI ENI++G I+ + +GE G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED-ISKFAEKDNIVLGEGG 158
Query: 237 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTTVVVAH 295
+ LS GQ+ +I++ARA+ K+ + LLD LD +E I + + +LM +T ++V
Sbjct: 159 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 296 RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
++ ++ D + ++ +G GT EL
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 15/230 (6%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IEL V F Y V KD N G+ +VG +GSGK++++ ++ AG++
Sbjct: 12 IELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPA--LFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 862
+DG LR +G V Q P+ + A++ +++A+ E
Sbjct: 68 FLDGSPADPF---LLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKV 124
Query: 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
V A P+ LSGGQKQR+AIA + ++ L LDE S LD S+ +
Sbjct: 125 LELVGLSGLAAADPL-----NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREI 179
Query: 923 QEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971
+ LE L G+ +LV H L + +D I + +G I GS E V R
Sbjct: 180 FQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 237 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAH 295
+ LSGGQKQR+AIA + ++ + L LDE S LD S+ + + L+ L G+ ++V H
Sbjct: 139 LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTH 198
Query: 296 RLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326
L + ++D + I G + G+ EE + +
Sbjct: 199 ELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 111/226 (49%), Gaps = 13/226 (5%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI----RRL 814
+V ++ +L ++ G+ L+G SG GK++ + +I +P+ G++ I K + + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 815 NLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAY 873
+ I +V Q AL+ +++DNIA+ + +
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN 134
Query: 874 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-- 931
+ P +LSGGQ+QR+A+ RA+++ P + L+DE S LDA+ ++ L++L R
Sbjct: 135 RKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL 189
Query: 932 GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 976
G TT+ V H ++ + D I V+ G + + GS E+ +P +
Sbjct: 190 GVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL-- 284
G + + + +LSGGQ+QR+A+ RA+++ P++ L+DE S LDA ++ L +L
Sbjct: 128 GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
Query: 285 MVGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326
+G TT+ V H ++ + D +AV+ +G + + G+ +E+ K
Sbjct: 188 QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 19/225 (8%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI----RRL 814
DV KD +L I+ G+ L+G SG GK++ + I +PT G++ I+ + + +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 815 NLKSLRLKIGLVQQEPALFA-ASIFDNIAYG---KEGXXXXXXXXXXXXXXXHGFVSALP 870
+ + V Q AL+ +++DNIA+ ++ G L
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELL- 136
Query: 871 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 930
+ +LSGGQ+QR+A+ RA+++ P + L DE S LDA+ + L++L
Sbjct: 137 -------NRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQ 189
Query: 931 R--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
R G TT+ V H ++ D I V G + + G+ E+ +P
Sbjct: 190 RQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKP 234
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL-- 284
G + + + +LSGGQ+QR+A+ RA+++ PK+ L DE S LDA + L +L
Sbjct: 131 GLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQR 190
Query: 285 MVGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326
+G TT+ V H ++ D +AV +G++ + GT +E+ K
Sbjct: 191 QLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYK 233
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 17/233 (7%)
Query: 749 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808
H+ S + V D +L + G+ ++GASG GK++++ + F P +G++ + G
Sbjct: 6 HIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSG 65
Query: 809 KDI--RRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYG---KEGXXXXXXXXXXXXXXX 862
K I + NL ++G + QE LF +++ NIAYG +G
Sbjct: 66 KTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLEL 125
Query: 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
G +S L Y +LSGGQ+QR A+ARA+ +P ++LLDE SALD + +
Sbjct: 126 TG-ISELAGRYPH-------ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI 177
Query: 923 QEALERLMR--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
+E + +R G++ V V+H R ++ D I V++ GRI++ S EL +P
Sbjct: 178 REDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 11/179 (6%)
Query: 151 FYDPNAGHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPXXXXXX 207
F P++G + L I K L ++G + QE LF T+ NI YG
Sbjct: 53 FEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG---LGNGK 109
Query: 208 XXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267
+ + L G S G +LSGGQ+QR A+ARA+ +P+++LLDE S
Sbjct: 110 GRTAQERQRIEAMLEL--TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFS 167
Query: 268 ALDAGSESIVQEALDRLMV--GRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
ALD ++E + + G++ V V+H R ++ D +AV++QG++++T + EL
Sbjct: 168 ALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 23/217 (10%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
V KD N +I GQ A+ G++G+GK+S++ +I +P+ GK+ G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 822 KIGLVQQEPALFAASIFDNI---AYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 878
I Q + +I +NI +Y + +S +G
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIGVSYDE-----YRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 879 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVL 937
E G+ LS GQ+ +I++ARAV K+ + LLD LD +E + + + +LM +T +L
Sbjct: 155 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 938 VAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 973
V ++ ++ D I ++ +G G+ SEL + +PD
Sbjct: 215 VTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 251
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 232 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTT 290
+GE G+ LS GQ+ +I++ARA+ K+ + LLD LD +E I + + +LM +T
Sbjct: 153 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 291 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323
++V ++ ++ D + ++ +G GT EL
Sbjct: 213 ILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 96/211 (45%), Gaps = 2/211 (0%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
+ ++ + I GQ L+G +GSGKS++++ R + T G++ IDG + L+ R
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 822 KIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERG 881
G++ Q+ +F+ + N+ + P + + G
Sbjct: 95 AFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153
Query: 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHR 941
LS G KQ + +AR+VL ILLLDE ++ LD + +++ L++ T +L R
Sbjct: 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR 213
Query: 942 LSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
+ + D V+++ ++ + S EL P
Sbjct: 214 IEAMLECDQFLVIEENKVRQYDSILELYHYP 244
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
Query: 157 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXX 216
G + +D V ++ L R G++ Q+ +F+ T +N L
Sbjct: 75 GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN-LDPNAAHSDQEIWKVADEVG 133
Query: 217 XHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 276
S I P + + G LS G KQ + +AR++L KILLLDE ++ LD + I
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 277 VQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQV 314
++ L + T ++ R+ + D VI++ +V
Sbjct: 194 IRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKV 231
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 21/210 (10%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
+ K +L ++ G+ +++GASGSGKS+++ ++ PT GKV ++GK++ N K L L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 822 ----KIGLVQQ----EPALFAAS--IFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPN 871
K+G V Q P L A I + GK G
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG------- 131
Query: 872 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 931
+ + +LSGG++QR+AIARA+ P +L DE T LD+ + + + ++
Sbjct: 132 ---DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 932 GRTT-VLVAHRLSTIRGVDCIGVVQDGRIV 960
G T+ V+V H ++DG++V
Sbjct: 189 GGTSIVMVTHERELAELTHRTLEMKDGKVV 218
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV 286
G ++ + +LSGG++QR+AIARA+ P +L DE T LD+ + V + ++
Sbjct: 129 GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 287 GRTTVV-VAHRLSTIRNVDTVAVIQQGQVV 315
G T++V V H ++ G+VV
Sbjct: 189 GGTSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 101/230 (43%), Gaps = 21/230 (9%)
Query: 766 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT----AGKVMIDGKDI---RRLNLKS 818
+L I A+VG S SGKS++I + + P +G+V+ GKD+ R L+
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 819 LRLK-IGLVQQ------EPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPN 871
+R K I LV Q P + F + G V P
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEA-HGVRWSHSELIEKASEKLRMVRLNPE 145
Query: 872 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD--AESECVLQEALERL 929
A + +QLSGG KQR+ IA A+L +P +L+LDE TSALD ++ + +
Sbjct: 146 AV---LNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKK 202
Query: 930 MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978
M T + V H ++ + D + V+ G +VE S ++ P Y+R
Sbjct: 203 MLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYTR 252
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 237 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES-IVQEALDRLMVGRTTVV-VA 294
+QLSGG KQR+ IA A+L +P +L+LDE TSALD +++ I+Q + + + T++ V
Sbjct: 153 LQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVT 212
Query: 295 HRLSTIRNV-DTVAVIQQGQVVE 316
H ++ + D VAVI G +VE
Sbjct: 213 HDIAVAAELADKVAVIYGGNLVE 235
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 29/232 (12%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--------- 812
V K +L+ RAG +++G+SGSGKS+ + I P+ G ++++G++I
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 813 ----RLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVS 867
+ L+ LR ++ +V Q L++ ++ +N+
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP--------IQVLGLSKHDARER 132
Query: 868 ALPNAYKTPVGERG-----VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
AL K + ER V LSGGQ+QR++IARA+ P +LL DE TSALD E +
Sbjct: 133 ALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 192
Query: 923 QEALERLM-RGRTTVLVAHRLSTIRGVDC-IGVVQDGRIVEQGSHSELVSRP 972
+++L G+T V+V H + R V + + G+I E+G ++ P
Sbjct: 193 LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNP 244
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 16/162 (9%)
Query: 170 QLRWLRDQIGLVNQEPALFA-TTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGY 228
QLR LR ++ +V Q L++ T+LEN++ + L G
Sbjct: 87 QLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP----IQVLGLSKHDARERALKYLAKVGI 142
Query: 229 STQV-GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV- 286
+ G+ V LSGGQ+QR++IARA+ P +LL DE TSALD +V E L R+M
Sbjct: 143 DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP---ELVGEVL-RIMQQ 198
Query: 287 ----GRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETGTHEEL 323
G+T VVV H + R+V + V + QG++ E G E++
Sbjct: 199 LAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 105/218 (48%), Gaps = 21/218 (9%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RL 821
K +L++ GQ L+GA+G+GK++ ++ I GK++ +G+DI + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 822 KIGLVQQEPALFAA-SIFDNIAYG------KEGXXXXXXXXXXXXXXXHGFVSALPNAYK 874
I LV + +F ++++N+ G KEG ++ +L K
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLE-----------WIFSLFPRLK 130
Query: 875 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 934
+ + G LSGG++Q +AI RA+ P +L DE + L + E ++++ + T
Sbjct: 131 ERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGT 190
Query: 935 TVLVAHR--LSTIRGVDCIGVVQDGRIVEQGSHSELVS 970
T+L+ + L ++ V++ G+IV +G SEL+
Sbjct: 191 TILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 236 GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAH 295
G LSGG++Q +AI RA+ PK+L DE + L S V E + ++ TT+++
Sbjct: 137 GGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVE 196
Query: 296 R--LSTIRNVDTVAVIQQGQVVETGTHEELI 324
+ L ++ V++ GQ+V G EL+
Sbjct: 197 QNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 25/216 (11%)
Query: 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGK--VMIDGKDIRRLNLKSLRL-KIGLV 826
+RAG+ LVG +G+GKS+++A R T+GK + G+ + + L L + L
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLA---RMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 827 QQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSG 886
QQ+ FA ++ + + + AL A +G QLSG
Sbjct: 80 QQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGAL--ALDDKLGRSTNQLSG 129
Query: 887 GQKQRIAIARAVLK-----NPA--ILLLDEATSALDAESECVLQEALERL-MRGRTTVLV 938
G+ QR+ +A VL+ NPA +LLLD+ ++LD + L + L L +G V+
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMS 189
Query: 939 AHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 973
+H L+ T+R +++ G+++ G E+++ P+
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 60/103 (58%), Gaps = 9/103 (8%)
Query: 231 QVGERGVQLSGGQKQRIAIARAMLK-----NP--KILLLDEATSALDAGSESIVQEALDR 283
++G QLSGG+ QR+ +A +L+ NP ++LLLD+ ++LD +S + + L
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSA 178
Query: 284 L-MVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 324
L G V+ +H L+ T+R+ +++ G+++ +G EE++
Sbjct: 179 LSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL-M 285
G ++ +R S G +++ IARA++ NP++ +LDE TS LD + V++ L +
Sbjct: 135 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 286 VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVR 341
G T +V +H + + + D +A+I G +VETGT EEL + A F+E+V+
Sbjct: 195 EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVK 251
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 17/217 (7%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
+ K + I G+ L+G +G+GK++ + +I P++G V + GK++ +R
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 822 KIGLVQQEPALFAASIFDNIAYGK--EGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGE 879
I + +E + I Y + G ++ L K +
Sbjct: 89 LISYLPEEAGAYRN--MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK----D 142
Query: 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA----ESECVLQEALERLMRGRTT 935
R S G +++ IARA++ NP + +LDE TS LD E +L++A + G T
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ---EGLTI 199
Query: 936 VLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 971
++ +H + + + D I ++ +G IVE G+ EL R
Sbjct: 200 LVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 228 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMV 286
Y + GE LSGGQ + + I RA++ NPK++++DE + + G + I L+
Sbjct: 147 YDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 287 GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324
G T +++ HRL + N +D + V+ GQ++ G EE I
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 241
Score = 56.2 bits (134), Expect = 9e-08, Method: Composition-based stats.
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 22/218 (10%)
Query: 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 826
++ + G ++G +GSGKS++I +I F G+V + KDI L G+V
Sbjct: 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIV 85
Query: 827 Q--QEPA-LFAASIFDNIAYGK----EGXXXXXXXXXXXXXXXHGFVSA--------LPN 871
+ Q P L ++ +N+ G+ E A L +
Sbjct: 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 145
Query: 872 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEALERLM 930
Y GE LSGGQ + + I RA++ NP ++++DE + + + + LE
Sbjct: 146 LYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 931 RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 967
+G T +++ HRL + +D + V+ +G+I+ +G E
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 228 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMV 286
Y + GE LSGGQ + + I RA++ NPK++++DE + + G + I L+
Sbjct: 147 YDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 287 GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324
G T +++ HRL + N +D + V+ GQ++ G EE I
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 241
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 14/208 (6%)
Query: 773 GQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQ--QEP 830
G ++G +GSGKS++I +I F G+V + KDI L G+V+ Q P
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIVRTFQTP 91
Query: 831 A-LFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTP--------VGERG 881
L ++ +N+ G+ + A+K +
Sbjct: 92 QPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151
Query: 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEALERLMRGRTTVLVAH 940
+LSGGQ + + I RA++ NP ++++DE + + + + LE +G T +++ H
Sbjct: 152 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEH 211
Query: 941 RLSTIRG-VDCIGVVQDGRIVEQGSHSE 967
RL + +D + V+ +G+I+ +G E
Sbjct: 212 RLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 25/216 (11%)
Query: 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGK--VMIDGKDIRRLNLKSLRL-KIGLV 826
+RAG+ LVG +G+GKS+++A R T+GK + G+ + + L L + L
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLA---RMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 827 QQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSG 886
QQ+ FA ++ + + + AL A +G QLSG
Sbjct: 80 QQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGAL--ALDDKLGRSTNQLSG 129
Query: 887 GQKQRIAIARAVLK-----NPA--ILLLDEATSALDAESECVLQEALERL-MRGRTTVLV 938
G+ QR+ +A VL+ NPA +LLLD+ +LD + L + L L +G V+
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMS 189
Query: 939 AHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 973
+H L+ T+R +++ G+++ G E+++ P+
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 231 QVGERGVQLSGGQKQRIAIARAMLK-----NP--KILLLDEATSALDAGSESIVQEALDR 283
++G QLSGG+ QR+ +A +L+ NP ++LLLD+ +LD +S + + L
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSA 178
Query: 284 L-MVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 324
L G V+ +H L+ T+R+ +++ G+++ +G EE++
Sbjct: 179 LSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 25/187 (13%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
+F+ N + G A++G +G GKS+++ L+ + P GK+ +
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQS------------ 67
Query: 822 KIGLVQQE-PALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGF---VSALPNAYKTPV 877
IG V Q + FA S+ D + G+ H + + AL T +
Sbjct: 68 -IGFVPQFFSSPFAYSVLDIVLMGRS-----THINTFAKPKSHDYQVAMQALDYLNLTHL 121
Query: 878 GERG-VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR--T 934
+R LSGGQ+Q I IARA+ ++LLDE TSALD ++ ++ L L + + T
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMT 181
Query: 935 TVLVAHR 941
V H+
Sbjct: 182 VVFTTHQ 188
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVV 293
LSGGQ+Q I IARA+ K++LLDE TSALD ++ IV L L + VV
Sbjct: 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGK--VMIDGKDIRRLNLKSLRL-KIGLV 826
+RAG+ LVG +G+GKS+++A R T+GK + G+ + + L L + L
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 827 QQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSG 886
QQ+ FA ++ + + + AL A +G QLSG
Sbjct: 80 QQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGAL--ALDDKLGRSTNQLSG 129
Query: 887 GQKQRIAIARAVLK-----NPA--ILLLDEATSALDAESECVLQEALERL-MRGRTTVLV 938
G+ QR+ +A VL+ NPA +LLLDE ++LD + L + L L +G V
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXS 189
Query: 939 AHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 973
+H L+ T+R +++ G+ + G E+++ P+
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 231 QVGERGVQLSGGQKQRIAIARAMLK-----NP--KILLLDEATSALDAGSESIVQEALDR 283
++G QLSGG+ QR+ +A +L+ NP ++LLLDE ++LD +S + + L
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSA 178
Query: 284 L-MVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 324
L G V +H L+ T+R+ +++ G+ + +G EE++
Sbjct: 179 LSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGK--VMIDGKDIRRLNLKSLRL-KIGLV 826
+RAG+ LVG +G+GKS+++A R T+GK + G+ + + L L + L
Sbjct: 23 VRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 827 QQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSG 886
QQ+ FA ++ + + + AL A +G QLSG
Sbjct: 80 QQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGAL--ALDDKLGRSTNQLSG 129
Query: 887 GQKQRIAIARAVLK-----NPA--ILLLDEATSALDAESECVLQEALERL-MRGRTTVLV 938
G+ QR+ +A VL+ NPA +LLLDE ++LD + L + L L +G V
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXS 189
Query: 939 AHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 973
+H L+ T+R +++ G+ + G E+++ P+
Sbjct: 190 SHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 231 QVGERGVQLSGGQKQRIAIARAMLK-----NP--KILLLDEATSALDAGSESIVQEALDR 283
++G QLSGG+ QR+ +A +L+ NP ++LLLDE ++LD +S + + L
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSA 178
Query: 284 L-MVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 324
L G V +H L+ T+R+ +++ G+ + +G EE++
Sbjct: 179 LCQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 228 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMV 286
Y + GE LSGGQ + + I RA++ NPK++++D+ + + G + I L+
Sbjct: 147 YDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAK 202
Query: 287 GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324
G T +++ HRL + N +D + V+ GQ++ G EE I
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 241
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/214 (22%), Positives = 96/214 (44%), Gaps = 14/214 (6%)
Query: 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 826
++ + G ++G +GSGKS++I +I F G+V + KDI L G+V
Sbjct: 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIV 85
Query: 827 Q--QEPA-LFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTP------- 876
+ Q P L ++ +N+ G+ + A+K
Sbjct: 86 RTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 145
Query: 877 -VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEALERLMRGRT 934
+ +LSGGQ + + I RA++ NP ++++D+ + + + + LE +G T
Sbjct: 146 LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGIT 205
Query: 935 TVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 967
+++ HRL + +D + V+ +G+I+ +G E
Sbjct: 206 FLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 19/220 (8%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-R 820
+ D +L I +G+ A++G +G+GKS+++ L+ + P+ G+ + G+++ K+L R
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 821 LKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNA-YKTPVGE 879
+ + Q F S+ + I G+ AL Y+
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRV---- 141
Query: 880 RGVQLSGGQKQRIAIARAVLK------NPAILLLDEATSALDAESECVLQEALERLMRGR 933
LSGG++QR+ +AR + + P L LDE TSALD + L +L R
Sbjct: 142 ----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQE 197
Query: 934 TTVL--VAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVS 970
+ V H L+ D I ++ G++V G+ E+++
Sbjct: 198 PLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 239 LSGGQKQRIAIARAMLK------NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVV 292
LSGG++QR+ +AR + + P+ L LDE TSALD + L +L V
Sbjct: 142 LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV 201
Query: 293 --VAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 324
V H L+ D + ++ QG++V GT EE++
Sbjct: 202 CCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 46/208 (22%)
Query: 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 829
IR G+ +VG +G GK++ + ++ +PT GKV D ++ K ++ E
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---------LTVAYKPQYIKAE 429
Query: 830 PALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKT----PVG-----ER 880
+ I K N YKT P+G +R
Sbjct: 430 YEGTVYELLSKIDSSKLNS----------------------NFYKTELLKPLGIIDLYDR 467
Query: 881 GVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG--RTTVL 937
V+ LSGG+ QR+AIA +L++ I LLDE ++ LD E + A+ LM +T ++
Sbjct: 468 NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
Query: 938 VAHRLSTIRGVDCIGVVQDGRIVEQGSH 965
V H + I V +V +G E G H
Sbjct: 528 VEHDVLMIDYVSDRLIVFEG---EPGRH 552
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 234 ERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG--RTT 290
+R V+ LSGG+ QR+AIA +L++ I LLDE ++ LD V A+ LM +T
Sbjct: 466 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Query: 291 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRF 336
+VV H + I V ++ +G E G H + G + RF
Sbjct: 526 LVVEHDVLMIDYVSDRLIVFEG---EPGRHGRALPPMGMREGMNRF 568
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHR 296
QLSGG+ QR+AIA A+L+ DE +S LD V + RL G+ +VV H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 297 LSTIRNVDTVAVIQQGQ 313
L+ + + V + G+
Sbjct: 288 LAVLDYLSDVIHVVYGE 304
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 883 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHR 941
QLSGG+ QR+AIA A+L+ DE +S LD + + RL G+ ++V H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 942 LSTI 945
L+ +
Sbjct: 288 LAVL 291
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 46/208 (22%)
Query: 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 829
IR G+ +VG +G GK++ + ++ +PT GKV D ++ K ++ E
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---------LTVAYKPQYIKAE 415
Query: 830 PALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKT----PVG-----ER 880
+ I K N YKT P+G +R
Sbjct: 416 YEGTVYELLSKIDSSKLNS----------------------NFYKTELLKPLGIIDLYDR 453
Query: 881 GVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG--RTTVL 937
V+ LSGG+ QR+AIA +L++ I LLDE ++ LD E + A+ LM +T ++
Sbjct: 454 NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 513
Query: 938 VAHRLSTIRGVDCIGVVQDGRIVEQGSH 965
V H + I V +V +G E G H
Sbjct: 514 VEHDVLMIDYVSDRLIVFEG---EPGRH 538
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 234 ERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG--RTT 290
+R V+ LSGG+ QR+AIA +L++ I LLDE ++ LD V A+ LM +T
Sbjct: 452 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 511
Query: 291 VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRF 336
+VV H + I V ++ +G E G H + G + RF
Sbjct: 512 LVVEHDVLMIDYVSDRLIVFEG---EPGRHGRALPPMGMREGMNRF 554
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHR 296
QLSGG+ QR+AIA A+L+ DE +S LD V + RL G+ +VV H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 297 LSTIRNVDTVAVIQQGQ 313
L+ + + V + G+
Sbjct: 274 LAVLDYLSDVIHVVYGE 290
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 883 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHR 941
QLSGG+ QR+AIA A+L+ DE +S LD + + RL G+ ++V H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 942 LSTI 945
L+ +
Sbjct: 274 LAVL 277
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 877 VGERGVQLSGGQKQRIAIARAVLKNPA---ILLLDEATSALDAESECVLQEALERLM-RG 932
+G+ LSGG+ QRI +A + K + +LDE T L E L E L RL+ RG
Sbjct: 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858
Query: 933 RTTVLVAHRLSTIRGVDCI------GVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 981
T +++ H L I+ D I G + G IV G+ E+ P R L+
Sbjct: 859 NTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLK 913
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPK---ILLLDEATSALDAGSESIVQEALDR 283
GY ++G+ LSGG+ QRI +A + K + +LDE T L + E L R
Sbjct: 795 GY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR 853
Query: 284 LM-VGRTTVVVAHRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGAYA 331
L+ G T +V+ H L I+N D + + + G +V TGT EE+ +Y
Sbjct: 854 LVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYT 908
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 884 LSGGQKQRIAIARAVLK--NPAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVAH 940
LSGG+ QRI +A + I +LDE T L L + L++L G T ++V H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 941 RLSTIRGVDCI------GVVQDGRIVEQGSHSELVSRPDGAYS 977
IR D I G GR+V QG+ EL+ PD + +
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLT 567
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 239 LSGGQKQRIAIARAMLKNPK--ILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAH 295
LSGG+ QRI +A + I +LDE T L + + L +L +G T +VV H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 296 RLSTIRNVDTVAVI------QQGQVVETGTHEELI 324
IRN D + I G+VV GT +EL+
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 237 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG-RTTVVVAH 295
V SGG+K+R I + + P++ +LDE+ S LD + +V + ++ L G R+ ++V H
Sbjct: 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
Query: 296 --RLSTIRNVDTVAVIQQGQVVETG 318
R+ D V V+ QG++V++G
Sbjct: 223 YQRILDYIKPDYVHVLYQGRIVKSG 247
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG-RTTVLVAH 940
V SGG+K+R I + + P + +LDE+ S LD ++ V+ + + L G R+ ++V H
Sbjct: 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
Query: 941 --RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
R+ D + V+ GRIV+ G + + + Y L + Q
Sbjct: 223 YQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ 267
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 756 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALI--ERFYDPTAGKVMIDGKDIRR 813
S D + + +L + G+ A++G +GSGKS++ A + Y+ T G V GKD+
Sbjct: 29 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 88
Query: 814 LN 815
L+
Sbjct: 89 LS 90
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 237 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG-RTTVVVAH 295
V SGG+K+R I + + P++ +LDE+ S LD + +V + ++ L G R+ ++V H
Sbjct: 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 203
Query: 296 --RLSTIRNVDTVAVIQQGQVVETG 318
R+ D V V+ QG++V++G
Sbjct: 204 YQRILDYIKPDYVHVLYQGRIVKSG 228
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG-RTTVLVAH 940
V SGG+K+R I + + P + +LDE+ S LD ++ V+ + + L G R+ ++V H
Sbjct: 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 203
Query: 941 --RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
R+ D + V+ GRIV+ G + + + Y L + Q
Sbjct: 204 YQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ 248
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 756 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALI--ERFYDPTAGKVMIDGKDIRR 813
S D + + +L + G+ A++G +GSGKS++ A + Y+ T G V GKD+
Sbjct: 10 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 69
Query: 814 LN 815
L+
Sbjct: 70 LS 71
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 879 ERGVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTV 936
ER +Q LSGG+ QR+AIA A+L+N DE +S LD A+ RL G++ +
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 937 LVAHRLSTI 945
+V H L+ +
Sbjct: 213 VVEHDLAVL 221
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 234 ERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTV 291
ER +Q LSGG+ QR+AIA A+L+N DE +S LD A+ RL G++ +
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 292 VVAHRLSTI 300
VV H L+ +
Sbjct: 213 VVEHDLAVL 221
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 43/188 (22%)
Query: 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 829
I+ G+ +VG +G GK++ + + +PT GK+ D V +
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDL----------------TVAYK 352
Query: 830 PALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKT----PVG-----ER 880
P A EG F YKT P+G +R
Sbjct: 353 PQYIKADY--------EGTVYELLSKIDASKLNSNF-------YKTELLKPLGIIDLYDR 397
Query: 881 GV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG--RTTVL 937
V +LSGG+ QR+AIA +L++ I LLDE ++ LD E + A+ L +T ++
Sbjct: 398 EVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALV 457
Query: 938 VAHRLSTI 945
V H + I
Sbjct: 458 VEHDVLXI 465
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG--RTTVVVAH 295
+LSGG+ QR+AIA +L++ I LLDE ++ LD V A+ L +T +VV H
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 296 RLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRF 336
+ I V + +G E G + + G RF
Sbjct: 461 DVLXIDYVSDRLXVFEG---EPGKYGRALPPXGXREGXNRF 498
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 298
LSGG K ++A+ARA+L+N ILLLDE T+ LD + + + L+ G T++ ++H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISHDSV 606
Query: 299 TIRNVDTVAVIQQGQVVE--TGTHEELIAK---AGAYASL 333
+ NV + +G + G E + K A AY L
Sbjct: 607 FLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEEL 646
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 940
LSGG K ++A+ARAVL+N ILLLDE T+ LD + L L G T++ ++H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLS 943
LSGGQK ++ +A + P +++LDE T+ LD +S L +AL+ G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 944 TIRGV-DCIGVVQDGRIVEQGSH 965
+ + + + V+DGR+ G +
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSGHN 982
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 298
LSGGQK ++ +A + P +++LDE T+ LD S + +AL G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 299 TIRNV-DTVAVIQQGQVVETG 318
+N+ + V ++ G++ +G
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSG 980
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 745 IELRHVDFAYP--SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
+++ +++F YP S+P + D N + A++G +G+GKS++I ++ PT+G
Sbjct: 672 VKVTNMEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Query: 803 KV 804
+V
Sbjct: 729 EV 730
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 298
LSGG K ++A+ARA+L+N ILLLDE T+ LD + + + L+ G T++ ++H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISHDSV 606
Query: 299 TIRNV 303
+ NV
Sbjct: 607 FLDNV 611
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 940
LSGG K ++A+ARAVL+N ILLLDE T+ LD + L L G T++ ++H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLS 943
LSGGQK ++ +A + P +++LDE T+ LD +S L +AL+ G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 944 TIRGV-DCIGVVQDGRIVEQGSH 965
+ + + + V+DGR G +
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSGHN 982
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 298
LSGGQK ++ +A + P +++LDE T+ LD S + +AL G +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 299 TIRNV-DTVAVIQQGQVVETG 318
+N+ + V ++ G+ +G
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSG 980
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 745 IELRHVDFAYP--SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
+++ + +F YP S+P + D N + A++G +G+GKS++I ++ PT+G
Sbjct: 672 VKVTNXEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Query: 803 KV 804
+V
Sbjct: 729 EV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 298
LSGG K ++A+ARA+L+N ILLLDE T+ LD + + + L+ G T++ ++H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISHDSV 600
Query: 299 TIRNV 303
+ NV
Sbjct: 601 FLDNV 605
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 940
LSGG K ++A+ARAVL+N ILLLDE T+ LD + L L G T++ ++H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 597
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLS 943
LSGGQK ++ +A + P +++LDE T+ LD +S L +AL+ G +++ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 944 TIRGV-DCIGVVQDGRIVEQGSH 965
+ + + + V+DGR G +
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSGHN 976
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 298
LSGGQK ++ +A + P +++LDE T+ LD S + +AL G +++ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 299 TIRNV-DTVAVIQQGQVVETG 318
+N+ + V ++ G+ +G
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSG 974
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 745 IELRHVDFAYP--SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
+++ + +F YP S+P + D N + A++G +G+GKS++I ++ PT+G
Sbjct: 666 VKVTNXEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 722
Query: 803 KV 804
+V
Sbjct: 723 EV 724
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 110/252 (43%), Gaps = 18/252 (7%)
Query: 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801
RG L +D + + K + +I G L G +G+GK++++ ++ + T+
Sbjct: 16 RGSHXLIQLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS 75
Query: 802 GKVMIDGKDIRRL--NLKSLRLKIGLVQQ---EPALFAASIFDNIAYGK-EGXXXXXXXX 855
G V + GK ++ + +++R IG V E + D + G +
Sbjct: 76 GTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDID 135
Query: 856 XXXXXXXHGFVSALPNAYKTP--VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
H + + + K +G LS G+KQR+ IARA+ P +L+LDE +
Sbjct: 136 DEIRNEAHQLLKLVGXSAKAQQYIG----YLSTGEKQRVXIARALXGQPQVLILDEPAAG 191
Query: 914 LD---AESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969
LD ES + ++L + V H + I I +++DG+ ++QG+ +++
Sbjct: 192 LDFIARESLLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
Query: 970 SRPDGAYSRLLQ 981
+ + SR Q
Sbjct: 252 TSEN--XSRFFQ 261
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTT---VVVAH 295
LS G+KQR+ IARA+ P++L+LDE + LD + + LD L T + V H
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTH 221
Query: 296 RLSTIR-NVDTVAVIQQGQVVETGTHEELI 324
+ I N + +++ GQ ++ G E+++
Sbjct: 222 FIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 15/213 (7%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALI--ERFYDPTAGKVMIDGKDIRRLN---- 815
+ K NL + G+ AL+G +G+GKS++ ++ + Y G++++DG++I L+
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 816 -LKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYK 874
K L L + P + A+ K G + +Y
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLD-WDESYL 136
Query: 875 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 934
+ G SGG+K+R I + ++ P +LDE S LD ++ V+ + MRG
Sbjct: 137 SRYLNEG--FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV-NAMRGPN 193
Query: 935 --TVLVAH--RLSTIRGVDCIGVVQDGRIVEQG 963
+++ H R+ D + V+ DGR+V G
Sbjct: 194 FGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM---VGRTTVVVAH 295
SGG+K+R I + ++ P +LDE S LD + +V ++ + G +
Sbjct: 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203
Query: 296 RLSTIRNVDTVAVIQQGQVVETGTHE---ELIAKA 327
R+ D V V+ G+VV TG E EL AK
Sbjct: 204 RILNYIQPDKVHVMMDGRVVATGGPELALELEAKG 238
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPK---ILLLDEATSALDAGSESIVQEALDR 283
GY ++G+ LSGG+ QR+ +A + + + +LDE T+ L + + + L R
Sbjct: 835 GY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 284 LM-VGRTTVVVAHRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGAYASLIRF 336
L+ G T +V+ H L I+ D + + + GQ+V GT EE+ ++ R+
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTG--RY 951
Query: 337 QEMVRNRDFA 346
+ + RD A
Sbjct: 952 LKPILERDRA 961
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 877 VGERGVQLSGGQKQRIAIARAVLKNP---AILLLDEATSALDAESECVLQEALERLM-RG 932
+G+ LSGG+ QR+ +A + + + +LDE T+ L + L + L RL+ G
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 933 RTTVLVAHRLSTIRGVDCI------GVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 981
T +++ H L I+ D I G + G+IV G+ E+ + R L+
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPK---ILLLDEATSALDAGSESIVQEALDR 283
GY ++G+ LSGG+ QR+ +A + + + +LDE T+ L + + + L R
Sbjct: 835 GYX-KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 284 LM-VGRTTVVVAHRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGAYASLIRF 336
L+ G T +V+ H L I+ D + + + GQ+V GT EE+ ++ R+
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTG--RY 951
Query: 337 QEMVRNRDFA 346
+ + RD A
Sbjct: 952 LKPILERDRA 961
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 877 VGERGVQLSGGQKQRIAIARAVLKNP---AILLLDEATSALDAESECVLQEALERLM-RG 932
+G+ LSGG+ QR+ +A + + + +LDE T+ L + L + L RL+ G
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 933 RTTVLVAHRLSTIRGVDCI------GVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 981
T +++ H L I+ D I G + G+IV G+ E+ + R L+
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 877 VGERGVQLSGGQKQRIAIA---RAVLKNPAILLLDEATSALDAESECVLQEALERLMR-G 932
+G+ +LSGG+ QRI +A R + + +LDE T+ L LQ L +L+ G
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 933 RTTVLVAHRLSTIRGVDCI-----GVVQD-GRIVEQGSHSEL 968
T + V H++ + D + G +D GR+V QG+ +E+
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEV 825
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 231 QVGERGVQLSGGQKQRIAIARAMLKNPK---ILLLDEATSALDAGSESIVQEALDRLM-V 286
++G+ +LSGG+ QRI +A + ++ + + +LDE T+ L +Q L +L+
Sbjct: 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 287 GRTTVVVAHRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGA 329
G T + V H++ + D V I G++V GT E+ AG+
Sbjct: 783 GNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGS 831
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 884 LSGGQKQRIAIARAVLKN--PAILLLDEATSALDAESECVLQEALERLMRGRTTV-LVAH 940
LS G+ QR+ +A + N + +LDE ++ L L ALE L RG ++ +V H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 941 RLSTIRGVDCI 951
L IR D +
Sbjct: 440 DLDVIRRADWL 450
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPK---ILLLDEATSALDAGSESIVQEALDR 283
GY ++G+ LSGG+ QR+ +A + + + +LDE T+ L + + + L R
Sbjct: 533 GY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 591
Query: 284 LM-VGRTTVVVAHRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGAYASLIRF 336
L+ G T +V+ H L I+ D + + + GQ+V GT EE+ ++ R+
Sbjct: 592 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTG--RY 649
Query: 337 QEMVRNRDFA 346
+ + RD A
Sbjct: 650 LKPILERDRA 659
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 877 VGERGVQLSGGQKQRIAIARAVLKNP---AILLLDEATSALDAESECVLQEALERLM-RG 932
+G+ LSGG+ QR+ +A + + + +LDE T+ L + L + L RL+ G
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 596
Query: 933 RTTVLVAHRLSTIRGVDCI------GVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 981
T +++ H L I+ D I G + G+IV G+ E+ + R L+
Sbjct: 597 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 651
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR--TTVLVAHR 941
LSGG+ Q++ IA + K + +LD+ +S LD E ++ +A++R+ R R T ++ H
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445
Query: 942 LS 943
LS
Sbjct: 446 LS 447
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 942
LSGG QR+ +A ++L+ + + D+ +S LD + +A+ L++ + ++V H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR--TTVVVAHR 296
LSGG+ Q++ IA + K + +LD+ +S LD IV +A+ R+ R T ++ H
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445
Query: 297 LSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRD 344
LS + ++ +G+ + G + +R E+ RD
Sbjct: 446 LSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLRELEVTFRRD 493
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 297
LSGG QR+ +A ++L+ + + D+ +S LD + +A+ L+ + +VV H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 48/205 (23%)
Query: 752 FAYPSRPDVVVFKDFNLRIRAGQ---SQALV--GASGSGKSSVIALIERFYDPTAGKVMI 806
F+YPS DF L + G+ S+ LV G +G+GK+++I L+ AG +
Sbjct: 354 FSYPSLKKTQ--GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLL-------AGALKP 404
Query: 807 D-GKDIRRLNLKSLRLKI-----GLVQQEPALFAASI---FDNIAYGKEGXXXXXXXXXX 857
D G+DI +LN+ KI G V+Q LF I F N + +
Sbjct: 405 DEGQDIPKLNVSMKPQKIAPKFPGTVRQ---LFFKKIRGQFLNPQFQTDVVKPLRIDDII 461
Query: 858 XXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
H LSGG+ QR+AI A+ I L+DE ++ LD+E
Sbjct: 462 DQEVQH--------------------LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE 501
Query: 918 SECVLQEALER--LMRGRTTVLVAH 940
+ + + R L +T +V H
Sbjct: 502 QRIICSKVIRRFILHNKKTAFIVEH 526
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 29/194 (14%)
Query: 771 RAGQSQALVGASGSGKSSVIALIE--------RFYDPTAGKVMID---GKDIRRLNLKSL 819
R GQ LVG +G GKS+ + ++ RF DP + +I G +++ K L
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 820 RLKIGLVQQEPALFAASIFDNIAYGKEGXXXXX-------XXXXXXXXXXHGFVSALPNA 872
I A+ DNI +G + + L N
Sbjct: 161 EDDIK------AIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENV 214
Query: 873 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-R 931
K + +LSGG+ QR AI + ++ + + DE +S LD + + + L+
Sbjct: 215 LKRDIE----KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP 270
Query: 932 GRTTVLVAHRLSTI 945
+ + V H LS +
Sbjct: 271 TKYVICVEHDLSVL 284
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAH 295
LSGG+ QR+AI A+ I L+DE ++ LD+ I + + R ++ +T +V H
Sbjct: 467 HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-GRTTVVVAHR 296
+LSGG+ QR AI + ++ + + DE +S LD + + L+ + + V H
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280
Query: 297 LSTIRNV-DTVAVI 309
LS + + D V +I
Sbjct: 281 LSVLDYLSDFVCII 294
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 39/203 (19%), Positives = 88/203 (43%), Gaps = 26/203 (12%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
++E+R + Y D V + + I G G +G GK++++ I + P G+
Sbjct: 10 KLEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 804 VMIDGKDIRRLNLKSLRLKIGLV-----QQEPALFAASIFDNIAYGKEGXXXXXXXXXXX 858
++ +G I ++ K L ++ E L A + + K
Sbjct: 66 IIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK------------- 112
Query: 859 XXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 918
+ + AL + + ++ +LS G +R+ +A +L N I +LD+ A+D +S
Sbjct: 113 ----NEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 919 ECVLQEALERLMRGRTTVLVAHR 941
+ + +++ +++ + V+++ R
Sbjct: 169 KHKVLKSILEILKEKGIVIISSR 191
Score = 33.5 bits (75), Expect = 0.56, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 35/59 (59%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHR 296
+LS G +R+ +A +L N +I +LD+ A+D S+ V +++ ++ + V+++ R
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 239 LSGGQKQRIAIARAMLKN--PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAH 295
LSGG+ QRI +A + + +LDE + L + E L RL +G T +VV H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 296 RLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMV 340
TI + D + I G G H I +G Y L+R ++ +
Sbjct: 582 DEDTIEHADWIVDIGPG----AGEHGGRIVHSGPYDELLRNKDSI 622
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 884 LSGGQKQRIAIARAVLKN--PAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVAH 940
LSGG+ QRI +A + + +LDE + L L E L RL G T ++V H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 941 RLSTIRGVDCIGVV------QDGRIVEQGSHSELVSRPD---GAY 976
TI D I + GRIV G + EL+ D GAY
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAY 626
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNP---KILLLDEATSALDAGSESIVQEALDR 283
GY ++G+ LSGG+ QR+ +A + K + +LDE T+ L + ++
Sbjct: 853 GY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVING 911
Query: 284 LM-VGRTTVVVAHRLSTIRNVDTV------AVIQQGQVVETGTHEELIAKAGAY 330
L+ G T +V+ H L I+ D + G VV GT E++ A +Y
Sbjct: 912 LVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAVPASY 965
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 877 VGERGVQLSGGQKQRIAIARAVLKNP---AILLLDEATSALDAESECVLQEALERLM-RG 932
+G+ LSGG+ QR+ +A + K + +LDE T+ L + L + L+ +G
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKG 916
Query: 933 RTTVLVAHRLSTIRGVDCI 951
T +++ H L I+ D I
Sbjct: 917 NTVIVIEHNLDVIKTSDWI 935
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 32.7 bits (73), Expect = 0.93, Method: Composition-based stats.
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 27/189 (14%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822
++ NL + G+ ++G +GSGK++++ I P +G + I+G ++R++ +R
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIR-NYIRYS 77
Query: 823 IGLVQQEPALFAASI-FDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGE-- 879
L P + + ++I Y E F+ L A K +GE
Sbjct: 78 TNL----PEAYEIGVTVNDIVYLYEELKGLDRDL---------FLEML-KALK--LGEEI 121
Query: 880 ---RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTV 936
+ +LS GQ + + A+ P I+ LDE +DA V+ ++ G+ +
Sbjct: 122 LRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--GKEGI 179
Query: 937 LVAHRLSTI 945
LV H L +
Sbjct: 180 LVTHELDML 188
Score = 30.0 bits (66), Expect = 7.0, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 297
+LS GQ + + A+ P+I+ LDE +DA ++ + G+ ++V H L
Sbjct: 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--GKEGILVTHEL 185
Query: 298 STI 300
+
Sbjct: 186 DML 188
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 225 PNGYSTQVGERGVQLSGGQKQRI----AIARAMLKNPKILLLDEATSALDAGSESIVQEA 280
P G + ERGV++ R+ + L+ L+LDEA LD G E +++
Sbjct: 155 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 214
Query: 281 LDRLMVGRTTVV 292
+D++ R T++
Sbjct: 215 VDQIRPDRQTLM 226
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 225 PNGYSTQVGERGVQLSGGQKQRI----AIARAMLKNPKILLLDEATSALDAGSESIVQEA 280
P G + ERGV++ R+ + L+ L+LDEA LD G E +++
Sbjct: 141 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 200
Query: 281 LDRLMVGRTTVV 292
+D++ R T++
Sbjct: 201 VDQIRPDRQTLM 212
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 17/83 (20%)
Query: 778 LVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI--------------RRLNLKSLRLKI 823
LVG +G+GK++ +A + +Y KV+I D RLN K +K
Sbjct: 110 LVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKA 169
Query: 824 GLVQQEPALFAASIFDNIAYGKE 846
+ +P A+ +FD I KE
Sbjct: 170 NKLNADP---ASVVFDAIKKAKE 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,569,509
Number of Sequences: 62578
Number of extensions: 895855
Number of successful extensions: 2615
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2149
Number of HSP's gapped (non-prelim): 306
length of query: 987
length of database: 14,973,337
effective HSP length: 108
effective length of query: 879
effective length of database: 8,214,913
effective search space: 7220908527
effective search space used: 7220908527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)