Query 001980
Match_columns 987
No_of_seqs 603 out of 4337
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 13:47:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0055 Multidrug/pheromone ex 100.0 7E-185 1E-189 1641.0 100.7 974 2-984 253-1226(1228)
2 KOG0054 Multidrug resistance-a 100.0 4E-165 9E-170 1507.8 98.7 927 20-983 439-1375(1381)
3 PTZ00265 multidrug resistance 100.0 6E-149 1E-153 1434.2 117.5 976 4-983 281-1465(1466)
4 PLN03130 ABC transporter C fam 100.0 7E-148 2E-152 1437.0 115.8 925 18-984 536-1475(1622)
5 PLN03232 ABC transporter C fam 100.0 3E-146 6E-151 1424.3 112.2 922 19-984 537-1472(1495)
6 TIGR00957 MRP_assoc_pro multi 100.0 2E-142 5E-147 1389.5 115.6 935 23-983 558-1520(1522)
7 PTZ00243 ABC transporter; Prov 100.0 1E-136 3E-141 1330.8 113.9 930 22-984 486-1547(1560)
8 TIGR01271 CFTR_protein cystic 100.0 3E-134 5E-139 1309.9 113.8 935 17-984 316-1453(1490)
9 KOG0058 Peptide exporter, ABC 100.0 1E-110 3E-115 951.0 67.2 574 406-985 133-706 (716)
10 KOG0055 Multidrug/pheromone ex 100.0 5E-97 1E-101 885.5 55.9 577 405-984 12-589 (1228)
11 COG2274 SunT ABC-type bacterio 100.0 7.1E-95 1.5E-99 860.8 71.4 568 408-984 142-709 (709)
12 COG1132 MdlB ABC-type multidru 100.0 8.5E-89 1.9E-93 818.9 74.2 554 418-985 13-566 (567)
13 PRK11174 cysteine/glutathione 100.0 1.2E-87 2.7E-92 813.7 75.8 570 408-987 10-588 (588)
14 TIGR00958 3a01208 Conjugate Tr 100.0 7.4E-87 1.6E-91 817.6 73.9 564 407-980 148-711 (711)
15 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.2E-85 2.5E-90 808.3 76.3 562 408-983 123-685 (686)
16 COG4988 CydD ABC-type transpor 100.0 7.7E-85 1.7E-89 728.7 70.0 552 425-985 5-557 (559)
17 TIGR01193 bacteriocin_ABC ABC- 100.0 6E-85 1.3E-89 804.8 73.7 564 407-981 143-707 (708)
18 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 9E-85 2E-89 804.2 73.6 564 407-980 141-709 (710)
19 PRK11160 cysteine/glutathione 100.0 2.8E-84 6E-89 777.9 75.7 567 408-982 4-573 (574)
20 KOG0056 Heavy metal exporter H 100.0 3.7E-87 8E-92 713.6 37.0 503 476-984 272-775 (790)
21 PRK11176 lipid transporter ATP 100.0 2.8E-83 6.1E-88 775.3 74.5 567 409-985 14-581 (582)
22 TIGR03375 type_I_sec_LssB type 100.0 2E-83 4.3E-88 789.5 73.8 554 409-971 136-689 (694)
23 PRK10790 putative multidrug tr 100.0 5.9E-83 1.3E-87 772.8 75.2 565 408-984 11-576 (592)
24 TIGR01846 type_I_sec_HlyB type 100.0 1.6E-82 3.5E-87 780.7 75.2 567 408-984 127-693 (694)
25 COG4987 CydC ABC-type transpor 100.0 1.2E-82 2.5E-87 697.5 63.3 504 471-982 66-572 (573)
26 KOG0057 Mitochondrial Fe/S clu 100.0 5.1E-83 1.1E-87 700.4 59.2 544 433-985 43-588 (591)
27 TIGR02203 MsbA_lipidA lipid A 100.0 2E-81 4.3E-86 758.5 74.3 564 411-984 5-569 (571)
28 PRK13657 cyclic beta-1,2-gluca 100.0 1.5E-80 3.3E-85 750.5 75.4 565 408-984 7-571 (588)
29 TIGR02868 CydC thiol reductant 100.0 1E-80 2.2E-85 743.9 69.9 521 412-942 5-529 (529)
30 TIGR02204 MsbA_rel ABC transpo 100.0 5E-80 1.1E-84 746.5 74.9 567 411-983 9-575 (576)
31 TIGR01192 chvA glucan exporter 100.0 1E-79 2.2E-84 739.2 75.9 565 408-984 7-571 (585)
32 PTZ00265 multidrug resistance 100.0 2.8E-80 6.1E-85 797.8 74.0 571 404-984 43-729 (1466)
33 PRK10789 putative multidrug tr 100.0 8.3E-80 1.8E-84 739.2 72.3 541 436-985 11-552 (569)
34 COG5265 ATM1 ABC-type transpor 100.0 5E-82 1.1E-86 670.1 40.4 491 485-981 4-496 (497)
35 TIGR02857 CydD thiol reductant 100.0 1.3E-77 2.9E-82 717.0 71.1 527 420-954 3-529 (529)
36 COG1123 ATPase components of v 100.0 2.2E-79 4.9E-84 689.0 45.9 481 99-982 5-531 (539)
37 TIGR01842 type_I_sec_PrtD type 100.0 4.8E-76 1E-80 704.2 72.9 537 419-971 5-543 (544)
38 PRK10261 glutathione transport 100.0 9.4E-76 2E-80 707.4 51.7 497 99-978 12-561 (623)
39 PRK13549 xylose transporter AT 100.0 2.9E-76 6.2E-81 699.4 44.7 459 99-969 5-493 (506)
40 PRK15134 microcin C ABC transp 100.0 2.3E-75 4.9E-80 695.4 48.8 469 99-976 5-521 (529)
41 PRK09700 D-allose transporter 100.0 8.7E-75 1.9E-79 688.0 47.4 456 99-967 5-495 (510)
42 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.7E-72 5.9E-77 671.5 67.1 534 407-962 4-551 (555)
43 PRK10762 D-ribose transporter 100.0 1.3E-74 2.8E-79 684.4 45.4 451 99-969 4-483 (501)
44 TIGR03269 met_CoM_red_A2 methy 100.0 1.3E-74 2.8E-79 688.1 43.8 457 100-970 1-517 (520)
45 PRK11288 araG L-arabinose tran 100.0 4.8E-74 1E-78 679.6 44.8 453 99-969 4-484 (501)
46 TIGR02633 xylG D-xylose ABC tr 100.0 5.2E-74 1.1E-78 680.2 45.0 457 100-968 2-490 (500)
47 PRK15439 autoinducer 2 ABC tra 100.0 2.4E-73 5.3E-78 673.7 48.3 462 99-970 11-492 (510)
48 COG4172 ABC-type uncharacteriz 100.0 2.9E-73 6.3E-78 598.3 42.7 471 99-979 6-525 (534)
49 PRK10982 galactose/methyl gala 100.0 7.1E-73 1.5E-77 668.5 45.6 450 102-968 1-478 (491)
50 COG4618 ArpD ABC-type protease 100.0 1.8E-71 3.9E-76 602.9 52.2 492 469-971 69-561 (580)
51 TIGR01257 rim_protein retinal- 100.0 2.5E-70 5.3E-75 700.4 70.5 220 98-326 927-1150(2272)
52 KOG0058 Peptide exporter, ABC 100.0 2.6E-73 5.5E-78 646.7 34.7 335 3-339 371-706 (716)
53 PRK10938 putative molybdenum t 100.0 3.6E-72 7.7E-77 662.9 44.6 452 99-963 3-485 (490)
54 TIGR00956 3a01205 Pleiotropic 100.0 1.8E-70 3.9E-75 706.8 60.1 213 744-967 759-990 (1394)
55 PRK15064 ABC transporter ATP-b 100.0 1.6E-70 3.5E-75 654.0 52.6 480 100-971 2-526 (530)
56 PRK11819 putative ABC transpor 100.0 5.7E-69 1.2E-73 642.3 54.8 482 99-971 6-534 (556)
57 PLN03232 ABC transporter C fam 100.0 3E-67 6.4E-72 684.3 72.0 471 488-983 366-840 (1495)
58 PRK10522 multidrug transporter 100.0 4.7E-67 1E-71 626.6 66.5 473 476-970 61-539 (547)
59 PLN03130 ABC transporter C fam 100.0 6E-67 1.3E-71 680.5 72.8 538 420-983 301-840 (1622)
60 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.3E-68 7.2E-73 635.9 55.3 482 99-970 4-531 (552)
61 PRK10636 putative ABC transpor 100.0 5.6E-67 1.2E-71 631.2 53.0 200 744-969 312-516 (638)
62 COG2274 SunT ABC-type bacterio 100.0 1.8E-67 3.9E-72 626.4 38.2 331 5-337 378-708 (709)
63 PLN03140 ABC transporter G fam 100.0 6.8E-65 1.5E-69 651.4 63.7 213 744-966 867-1106(1470)
64 PRK11147 ABC transporter ATPas 100.0 9.3E-66 2E-70 622.6 52.2 200 744-969 319-527 (635)
65 PLN03073 ABC transporter F fam 100.0 1.9E-65 4.1E-70 618.0 48.3 199 744-968 508-712 (718)
66 COG1129 MglA ABC-type sugar tr 100.0 1E-65 2.2E-70 575.2 41.6 457 99-967 8-487 (500)
67 COG0488 Uup ATPase components 100.0 1.2E-64 2.6E-69 583.9 45.7 485 99-971 3-526 (530)
68 TIGR00954 3a01203 Peroxysomal 100.0 1.2E-62 2.5E-67 595.7 63.9 529 408-956 79-653 (659)
69 PRK13409 putative ATPase RIL; 100.0 7.4E-65 1.6E-69 603.1 38.4 192 744-964 340-536 (590)
70 TIGR00957 MRP_assoc_pro multi 100.0 1.6E-60 3.4E-65 622.1 73.2 540 420-983 317-862 (1522)
71 COG3845 ABC-type uncharacteriz 100.0 5.7E-63 1.2E-67 539.3 40.9 462 99-967 4-489 (501)
72 COG4988 CydD ABC-type transpor 100.0 2E-63 4.4E-68 556.6 37.8 329 7-338 227-556 (559)
73 COG1132 MdlB ABC-type multidru 100.0 1.8E-62 3.8E-67 590.6 40.3 328 6-338 238-565 (567)
74 PRK11174 cysteine/glutathione 100.0 5.6E-62 1.2E-66 589.7 40.7 326 8-338 251-585 (588)
75 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.6E-61 3.4E-66 594.7 41.6 324 6-336 361-684 (686)
76 KOG0056 Heavy metal exporter H 100.0 1.7E-62 3.6E-67 524.7 24.5 327 11-340 450-777 (790)
77 COG4987 CydC ABC-type transpor 100.0 1.2E-61 2.7E-66 531.9 31.8 325 6-335 245-571 (573)
78 KOG0057 Mitochondrial Fe/S clu 100.0 2.7E-61 5.8E-66 529.4 33.9 320 12-337 267-586 (591)
79 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 4.7E-61 1E-65 593.2 39.7 326 6-334 379-709 (710)
80 TIGR00958 3a01208 Conjugate Tr 100.0 5.6E-61 1.2E-65 588.9 39.3 322 8-333 389-710 (711)
81 PRK11176 lipid transporter ATP 100.0 2.7E-60 5.8E-65 574.8 40.8 327 7-337 252-579 (582)
82 TIGR01193 bacteriocin_ABC ABC- 100.0 2.2E-60 4.7E-65 586.6 40.0 324 7-334 382-706 (708)
83 TIGR03375 type_I_sec_LssB type 100.0 5.2E-60 1.1E-64 581.9 40.5 319 6-326 371-689 (694)
84 TIGR01271 CFTR_protein cystic 100.0 1.2E-56 2.6E-61 583.8 71.7 525 428-980 88-645 (1490)
85 KOG0054 Multidrug resistance-a 100.0 5.7E-57 1.2E-61 554.7 63.8 479 483-982 262-742 (1381)
86 PRK11160 cysteine/glutathione 100.0 1.9E-59 4.2E-64 563.0 39.9 326 5-335 246-572 (574)
87 PRK10790 putative multidrug tr 100.0 5E-59 1.1E-63 564.0 41.7 311 21-339 267-577 (592)
88 PRK13657 cyclic beta-1,2-gluca 100.0 1.1E-58 2.4E-63 560.1 41.5 328 7-337 243-570 (588)
89 TIGR02203 MsbA_lipidA lipid A 100.0 1.5E-58 3.3E-63 559.0 40.5 327 6-336 240-567 (571)
90 TIGR01846 type_I_sec_HlyB type 100.0 1.8E-58 4E-63 567.7 41.7 328 6-336 364-691 (694)
91 TIGR02204 MsbA_rel ABC transpo 100.0 3.5E-58 7.7E-63 556.0 40.8 328 9-336 247-574 (576)
92 PRK10789 putative multidrug tr 100.0 4.7E-58 1E-62 551.0 41.1 327 8-338 225-551 (569)
93 PTZ00243 ABC transporter; Prov 100.0 6.4E-55 1.4E-59 567.5 70.8 544 418-982 242-880 (1560)
94 COG5265 ATM1 ABC-type transpor 100.0 2.7E-58 5.9E-63 489.3 28.2 322 12-335 175-496 (497)
95 COG4618 ArpD ABC-type protease 100.0 3.5E-58 7.6E-63 499.4 29.1 316 6-326 245-561 (580)
96 TIGR01192 chvA glucan exporter 100.0 7.7E-57 1.7E-61 541.1 41.8 328 7-337 243-570 (585)
97 TIGR02868 CydC thiol reductant 100.0 2.8E-57 6E-62 541.9 35.9 289 6-297 240-529 (529)
98 TIGR01842 type_I_sec_PrtD type 100.0 1.8E-56 4E-61 535.3 40.5 314 7-325 228-542 (544)
99 TIGR02857 CydD thiol reductant 100.0 5.3E-55 1.2E-59 522.2 36.3 296 10-309 234-529 (529)
100 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.9E-55 6.3E-60 473.9 27.6 237 743-983 1-237 (275)
101 COG1126 GlnQ ABC-type polar am 100.0 6.3E-53 1.4E-57 413.9 19.8 218 99-326 2-226 (240)
102 TIGR01194 cyc_pep_trnsptr cycl 100.0 4.3E-50 9.3E-55 480.2 34.9 288 19-317 253-551 (555)
103 PRK14257 phosphate ABC transpo 100.0 1.2E-50 2.7E-55 449.3 26.8 228 739-974 75-317 (329)
104 KOG0927 Predicted transporter 100.0 9.2E-50 2E-54 436.3 32.7 194 744-962 389-587 (614)
105 COG1126 GlnQ ABC-type polar am 100.0 1.4E-50 3E-55 397.5 22.8 218 744-975 2-230 (240)
106 COG1135 AbcC ABC-type metal io 100.0 3.1E-50 6.7E-55 415.1 21.9 220 745-975 2-236 (339)
107 COG1125 OpuBA ABC-type proline 100.0 4E-50 8.7E-55 401.2 19.3 218 100-327 2-227 (309)
108 COG1135 AbcC ABC-type metal io 100.0 5.2E-50 1.1E-54 413.5 20.0 223 100-327 2-233 (339)
109 COG1117 PstB ABC-type phosphat 100.0 2.1E-49 4.5E-54 386.6 17.6 220 744-973 7-240 (253)
110 COG1117 PstB ABC-type phosphat 100.0 7.2E-49 1.6E-53 382.9 17.3 219 98-326 6-238 (253)
111 cd03252 ABCC_Hemolysin The ABC 100.0 1.3E-47 2.7E-52 410.4 27.7 236 745-982 1-236 (237)
112 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.1E-47 2.4E-52 414.9 27.3 235 99-336 2-236 (275)
113 cd03288 ABCC_SUR2 The SUR doma 100.0 2.2E-47 4.8E-52 412.6 28.7 242 740-983 15-256 (257)
114 COG1125 OpuBA ABC-type proline 100.0 2.7E-48 5.8E-53 388.1 19.6 221 745-979 2-234 (309)
115 PRK10522 multidrug transporter 100.0 9.4E-47 2E-51 451.5 34.5 254 46-317 272-530 (547)
116 KOG0065 Pleiotropic drug resis 100.0 7.6E-46 1.7E-50 444.1 41.7 198 759-966 803-1017(1391)
117 COG1127 Ttg2A ABC-type transpo 100.0 3.9E-47 8.4E-52 379.1 21.2 223 98-330 7-240 (263)
118 KOG0062 ATPase component of AB 100.0 5.6E-46 1.2E-50 404.5 31.7 209 744-983 362-574 (582)
119 PRK14257 phosphate ABC transpo 100.0 1.6E-46 3.5E-51 416.4 25.6 277 32-326 23-314 (329)
120 COG1120 FepC ABC-type cobalami 100.0 4.1E-47 8.9E-52 394.8 19.2 214 99-326 2-229 (258)
121 COG1116 TauB ABC-type nitrate/ 100.0 9.6E-47 2.1E-51 383.3 20.6 199 99-312 3-207 (248)
122 cd03252 ABCC_Hemolysin The ABC 100.0 5E-46 1.1E-50 398.1 26.9 234 100-334 1-234 (237)
123 cd03251 ABCC_MsbA MsbA is an e 100.0 5.3E-46 1.2E-50 397.2 26.5 233 745-979 1-233 (234)
124 cd03253 ABCC_ATM1_transporter 100.0 7.1E-46 1.5E-50 396.8 27.4 235 745-982 1-235 (236)
125 cd03244 ABCC_MRP_domain2 Domai 100.0 6.7E-46 1.5E-50 392.8 26.4 221 743-965 1-221 (221)
126 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 7.8E-46 1.7E-50 396.8 27.0 236 745-981 1-236 (238)
127 cd03254 ABCC_Glucan_exporter_l 100.0 1.1E-45 2.4E-50 393.4 26.4 227 743-971 1-227 (229)
128 TIGR02314 ABC_MetN D-methionin 100.0 6.3E-46 1.4E-50 411.9 25.3 221 745-976 2-236 (343)
129 COG3839 MalK ABC-type sugar tr 100.0 3E-46 6.6E-51 403.2 21.8 213 99-327 3-225 (338)
130 COG3638 ABC-type phosphate/pho 100.0 2E-46 4.3E-51 373.0 18.2 217 99-325 3-237 (258)
131 COG1120 FepC ABC-type cobalami 100.0 4.7E-46 1E-50 386.8 21.7 214 744-971 2-229 (258)
132 COG3840 ThiQ ABC-type thiamine 100.0 3.7E-46 8E-51 353.9 18.8 210 100-327 2-221 (231)
133 COG1136 SalX ABC-type antimicr 100.0 8E-46 1.7E-50 377.6 22.5 209 100-315 2-221 (226)
134 COG2884 FtsE Predicted ATPase 100.0 1.5E-46 3.2E-51 360.0 15.9 206 100-318 2-219 (223)
135 COG3842 PotA ABC-type spermidi 100.0 2.2E-46 4.8E-51 406.4 18.4 214 98-327 4-228 (352)
136 COG1124 DppF ABC-type dipeptid 100.0 1.5E-45 3.3E-50 370.2 21.9 226 744-980 3-241 (252)
137 COG2884 FtsE Predicted ATPase 100.0 5.6E-46 1.2E-50 356.1 17.9 208 745-965 2-221 (223)
138 COG3839 MalK ABC-type sugar tr 100.0 2E-45 4.4E-50 396.8 23.1 218 744-977 3-230 (338)
139 COG1127 Ttg2A ABC-type transpo 100.0 3.7E-45 8E-50 364.9 22.9 226 744-983 8-248 (263)
140 cd03254 ABCC_Glucan_exporter_l 100.0 7.9E-45 1.7E-49 386.8 26.7 226 99-326 2-227 (229)
141 cd03251 ABCC_MsbA MsbA is an e 100.0 7.9E-45 1.7E-49 388.2 26.5 230 100-330 1-230 (234)
142 cd03245 ABCC_bacteriocin_expor 100.0 8.2E-45 1.8E-49 384.2 26.3 220 743-963 1-220 (220)
143 COG4178 ABC-type uncharacteriz 100.0 1.5E-41 3.2E-46 387.8 54.6 473 465-955 88-587 (604)
144 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1E-44 2.3E-49 388.1 26.8 229 100-328 1-229 (238)
145 cd03253 ABCC_ATM1_transporter 100.0 1.4E-44 3.1E-49 386.7 26.8 230 100-331 1-230 (236)
146 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.3E-45 1.1E-49 376.7 22.2 210 99-326 4-228 (254)
147 COG1122 CbiO ABC-type cobalt t 100.0 8.9E-45 1.9E-49 378.5 22.8 215 744-971 3-229 (235)
148 COG1122 CbiO ABC-type cobalt t 100.0 7E-45 1.5E-49 379.3 21.8 215 99-326 3-229 (235)
149 COG4615 PvdE ABC-type sideroph 100.0 1E-41 2.2E-46 358.4 45.5 475 465-962 50-529 (546)
150 PRK13631 cbiO cobalt transport 100.0 3.1E-44 6.8E-49 397.1 27.8 221 744-971 21-266 (320)
151 cd03261 ABC_Org_Solvent_Resist 100.0 1.7E-44 3.7E-49 385.6 24.2 218 745-977 1-232 (235)
152 cd03288 ABCC_SUR2 The SUR doma 100.0 5.7E-44 1.2E-48 386.0 28.5 236 96-333 16-252 (257)
153 COG3638 ABC-type phosphate/pho 100.0 8.7E-45 1.9E-49 361.3 20.1 222 744-981 3-245 (258)
154 TIGR02314 ABC_MetN D-methionin 100.0 1.3E-44 2.7E-49 401.5 23.6 220 100-326 2-231 (343)
155 cd03260 ABC_PstB_phosphate_tra 100.0 1.3E-44 2.8E-49 384.5 22.8 212 745-968 1-227 (227)
156 cd03248 ABCC_TAP TAP, the Tran 100.0 2.5E-44 5.3E-49 382.1 24.8 219 741-959 8-226 (226)
157 COG1118 CysA ABC-type sulfate/ 100.0 3.2E-45 6.9E-50 376.7 17.2 213 99-327 2-229 (345)
158 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2E-44 4.3E-49 372.4 22.9 217 744-980 4-235 (254)
159 COG3840 ThiQ ABC-type thiamine 100.0 2.1E-44 4.6E-49 341.9 20.6 211 745-973 2-222 (231)
160 COG1136 SalX ABC-type antimicr 100.0 4.8E-44 1E-48 364.6 24.2 206 745-961 2-222 (226)
161 PRK14269 phosphate ABC transpo 100.0 4.9E-44 1.1E-48 384.4 25.5 223 744-976 2-236 (246)
162 cd03244 ABCC_MRP_domain2 Domai 100.0 6.3E-44 1.4E-48 377.7 25.8 219 99-319 2-220 (221)
163 PRK14250 phosphate ABC transpo 100.0 8.5E-44 1.8E-48 381.0 26.3 223 744-980 3-231 (241)
164 cd03245 ABCC_bacteriocin_expor 100.0 8.7E-44 1.9E-48 376.4 26.0 219 99-318 2-220 (220)
165 PRK13650 cbiO cobalt transport 100.0 5.3E-44 1.2E-48 390.1 25.1 217 744-971 4-230 (279)
166 cd03369 ABCC_NFT1 Domain 2 of 100.0 9E-44 2E-48 372.3 25.5 206 740-965 2-207 (207)
167 TIGR00954 3a01203 Peroxysomal 100.0 3.4E-43 7.4E-48 426.0 34.2 263 32-311 358-653 (659)
168 COG3842 PotA ABC-type spermidi 100.0 1.7E-44 3.6E-49 391.8 19.3 220 744-979 5-235 (352)
169 PRK11153 metN DL-methionine tr 100.0 1.1E-43 2.3E-48 397.6 26.0 223 745-978 2-238 (343)
170 PRK11432 fbpC ferric transport 100.0 1E-43 2.3E-48 396.5 25.5 219 744-978 6-234 (351)
171 COG1124 DppF ABC-type dipeptid 100.0 6.5E-44 1.4E-48 358.4 21.3 218 99-326 3-232 (252)
172 PRK11650 ugpC glycerol-3-phosp 100.0 1.6E-43 3.4E-48 396.3 26.5 219 744-977 3-231 (356)
173 COG1116 TauB ABC-type nitrate/ 100.0 9.8E-44 2.1E-48 361.3 22.4 197 744-959 3-211 (248)
174 PRK13631 cbiO cobalt transport 100.0 1.7E-43 3.6E-48 391.3 25.5 222 98-326 20-266 (320)
175 TIGR03265 PhnT2 putative 2-ami 100.0 1.3E-43 2.8E-48 396.6 24.7 218 744-977 4-231 (353)
176 PRK14273 phosphate ABC transpo 100.0 2E-43 4.3E-48 381.7 25.3 225 744-978 7-246 (254)
177 cd03261 ABC_Org_Solvent_Resist 100.0 2E-43 4.2E-48 377.4 24.3 217 100-326 1-227 (235)
178 PRK13637 cbiO cobalt transport 100.0 1.9E-43 4.2E-48 387.0 24.9 218 745-971 3-235 (287)
179 TIGR00972 3a0107s01c2 phosphat 100.0 3.1E-43 6.7E-48 378.6 25.4 223 745-977 2-239 (247)
180 PRK10744 pstB phosphate transp 100.0 4.2E-43 9.2E-48 380.1 26.6 225 742-976 11-250 (260)
181 cd03248 ABCC_TAP TAP, the Tran 100.0 2.3E-43 5E-48 374.6 24.0 219 96-314 8-226 (226)
182 PRK14242 phosphate transporter 100.0 2.6E-43 5.6E-48 380.8 24.4 221 744-974 6-241 (253)
183 TIGR01186 proV glycine betaine 100.0 2E-43 4.4E-48 393.7 23.7 207 760-977 6-226 (363)
184 PRK13647 cbiO cobalt transport 100.0 3.6E-43 7.8E-48 382.6 25.0 213 744-969 4-226 (274)
185 PRK11650 ugpC glycerol-3-phosp 100.0 2.5E-43 5.4E-48 394.7 24.0 217 99-326 3-225 (356)
186 cd03296 ABC_CysA_sulfate_impor 100.0 5.2E-43 1.1E-47 374.9 25.3 213 745-973 3-229 (239)
187 cd03219 ABC_Mj1267_LivG_branch 100.0 3E-43 6.6E-48 376.5 23.5 213 745-971 1-233 (236)
188 PRK13643 cbiO cobalt transport 100.0 4.1E-43 8.9E-48 384.6 25.0 216 745-971 2-234 (288)
189 PRK13635 cbiO cobalt transport 100.0 4.1E-43 8.9E-48 382.8 24.8 216 744-971 5-230 (279)
190 PRK14267 phosphate ABC transpo 100.0 3.7E-43 8E-48 379.6 24.1 225 744-978 4-245 (253)
191 cd03263 ABC_subfamily_A The AB 100.0 2.5E-43 5.5E-48 372.9 22.3 211 745-968 1-219 (220)
192 PRK13642 cbiO cobalt transport 100.0 6.6E-43 1.4E-47 381.4 26.0 217 744-971 4-230 (277)
193 PRK10851 sulfate/thiosulfate t 100.0 5E-43 1.1E-47 391.8 25.4 218 744-977 2-233 (353)
194 PRK13646 cbiO cobalt transport 100.0 3.9E-43 8.5E-48 384.7 23.9 217 744-971 2-236 (286)
195 cd03258 ABC_MetN_methionine_tr 100.0 4.4E-43 9.5E-48 374.3 23.6 216 745-971 2-231 (233)
196 PRK09536 btuD corrinoid ABC tr 100.0 5.8E-43 1.3E-47 394.7 25.8 221 744-980 3-236 (402)
197 TIGR03258 PhnT 2-aminoethylpho 100.0 4.6E-43 9.9E-48 392.5 24.7 219 743-977 4-235 (362)
198 TIGR00960 3a0501s02 Type II (G 100.0 2.3E-43 5E-48 371.9 21.0 203 745-959 2-216 (216)
199 PRK11432 fbpC ferric transport 100.0 3.7E-43 8E-48 392.1 23.6 216 99-326 6-227 (351)
200 cd03256 ABC_PhnC_transporter A 100.0 5.1E-43 1.1E-47 376.1 23.6 212 745-969 1-233 (241)
201 PRK14247 phosphate ABC transpo 100.0 8.8E-43 1.9E-47 375.9 25.6 227 744-980 3-244 (250)
202 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.3E-43 7.2E-48 382.1 22.2 219 746-978 26-258 (269)
203 PRK14235 phosphate transporter 100.0 1.1E-42 2.3E-47 378.0 25.7 224 742-975 17-256 (267)
204 PRK15079 oligopeptide ABC tran 100.0 8.3E-43 1.8E-47 387.1 25.4 225 744-978 8-259 (331)
205 PRK09452 potA putrescine/sperm 100.0 8.7E-43 1.9E-47 391.5 25.6 218 744-977 14-241 (375)
206 cd03224 ABC_TM1139_LivF_branch 100.0 5.3E-43 1.1E-47 371.1 22.5 213 745-970 1-221 (222)
207 TIGR03265 PhnT2 putative 2-ami 100.0 4.6E-43 9.9E-48 392.1 23.1 217 99-327 4-226 (353)
208 PRK14268 phosphate ABC transpo 100.0 1E-42 2.2E-47 376.6 25.0 224 744-977 12-249 (258)
209 PRK13650 cbiO cobalt transport 100.0 9.9E-43 2.1E-47 380.2 25.0 221 99-326 4-230 (279)
210 cd03295 ABC_OpuCA_Osmoprotecti 100.0 8.8E-43 1.9E-47 373.9 24.1 221 745-976 1-231 (242)
211 TIGR01186 proV glycine betaine 100.0 3.4E-43 7.5E-48 391.9 21.2 205 115-326 6-220 (363)
212 TIGR02315 ABC_phnC phosphonate 100.0 8.2E-43 1.8E-47 374.8 23.4 212 745-969 2-234 (243)
213 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.3E-42 9.4E-47 372.7 29.0 220 741-980 36-256 (282)
214 TIGR03005 ectoine_ehuA ectoine 100.0 1.2E-42 2.5E-47 375.2 24.3 218 745-976 1-242 (252)
215 cd03259 ABC_Carb_Solutes_like 100.0 4.1E-43 8.9E-48 369.2 20.2 203 745-963 1-213 (213)
216 PRK14244 phosphate ABC transpo 100.0 6.4E-43 1.4E-47 377.1 22.1 223 745-977 6-244 (251)
217 PRK11629 lolD lipoprotein tran 100.0 1.2E-42 2.6E-47 370.6 23.9 210 744-964 5-228 (233)
218 PRK11000 maltose/maltodextrin 100.0 1.1E-42 2.4E-47 392.3 24.9 218 744-977 3-230 (369)
219 PRK13636 cbiO cobalt transport 100.0 1.3E-42 2.8E-47 380.0 24.7 215 744-971 5-232 (283)
220 cd03260 ABC_PstB_phosphate_tra 100.0 5E-43 1.1E-47 372.4 20.7 213 100-322 1-226 (227)
221 cd03219 ABC_Mj1267_LivG_branch 100.0 6.8E-43 1.5E-47 373.7 21.9 221 100-325 1-232 (236)
222 PRK11831 putative ABC transpor 100.0 1.4E-42 3.1E-47 377.4 24.7 224 744-981 7-244 (269)
223 PRK14251 phosphate ABC transpo 100.0 1E-42 2.3E-47 375.6 23.4 225 744-978 4-243 (251)
224 PRK13634 cbiO cobalt transport 100.0 1E-42 2.2E-47 382.0 23.6 217 745-971 3-236 (290)
225 PRK13637 cbiO cobalt transport 100.0 1.5E-42 3.2E-47 380.1 24.9 220 100-326 3-235 (287)
226 PRK13651 cobalt transporter AT 100.0 1.6E-42 3.6E-47 381.2 25.2 217 744-971 2-255 (305)
227 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2E-42 4.4E-47 369.6 25.1 212 745-971 2-222 (236)
228 PRK14259 phosphate ABC transpo 100.0 2.6E-42 5.7E-47 375.1 26.4 224 743-976 12-259 (269)
229 PRK13643 cbiO cobalt transport 100.0 1.5E-42 3.2E-47 380.3 24.5 220 100-326 2-234 (288)
230 PRK14237 phosphate transporter 100.0 2.3E-42 4.9E-47 375.4 25.7 221 743-973 19-254 (267)
231 PRK13632 cbiO cobalt transport 100.0 1.7E-42 3.7E-47 377.2 24.7 216 744-971 7-232 (271)
232 PRK14245 phosphate ABC transpo 100.0 1.5E-42 3.2E-47 374.1 23.9 223 744-976 3-240 (250)
233 PRK14236 phosphate transporter 100.0 2.5E-42 5.4E-47 376.2 25.8 223 742-974 23-260 (272)
234 PRK13633 cobalt transporter AT 100.0 1.7E-42 3.6E-47 378.9 24.4 217 744-971 4-234 (280)
235 PRK13640 cbiO cobalt transport 100.0 2.4E-42 5.3E-47 377.7 25.6 217 743-971 4-233 (282)
236 PRK14262 phosphate ABC transpo 100.0 1.8E-42 4E-47 373.5 24.2 227 744-980 3-244 (250)
237 cd03250 ABCC_MRP_domain1 Domai 100.0 2.4E-42 5.1E-47 360.7 24.2 200 745-958 1-204 (204)
238 PRK14248 phosphate ABC transpo 100.0 2.3E-42 5E-47 376.1 25.1 222 744-975 21-257 (268)
239 PRK14239 phosphate transporter 100.0 2E-42 4.4E-47 373.8 24.4 221 744-974 5-240 (252)
240 PRK14240 phosphate transporter 100.0 3.3E-42 7.1E-47 371.5 26.0 224 743-976 2-240 (250)
241 PRK14274 phosphate ABC transpo 100.0 3E-42 6.6E-47 373.4 25.8 224 744-977 12-250 (259)
242 PRK11153 metN DL-methionine tr 100.0 1.3E-42 2.9E-47 388.7 23.7 220 100-326 2-231 (343)
243 cd03226 ABC_cobalt_CbiO_domain 100.0 9E-43 1.9E-47 364.2 20.8 199 746-960 1-205 (205)
244 PRK09452 potA putrescine/sperm 100.0 1.6E-42 3.6E-47 389.3 24.2 217 98-326 13-235 (375)
245 PRK11308 dppF dipeptide transp 100.0 3.2E-42 6.9E-47 382.2 26.0 226 744-979 5-253 (327)
246 TIGR03258 PhnT 2-aminoethylpho 100.0 1.3E-42 2.8E-47 388.8 23.1 217 98-326 4-229 (362)
247 PRK14256 phosphate ABC transpo 100.0 3.6E-42 7.9E-47 371.4 25.7 225 742-976 2-242 (252)
248 PRK14254 phosphate ABC transpo 100.0 3.8E-42 8.2E-47 376.1 26.1 222 743-974 38-273 (285)
249 PRK10070 glycine betaine trans 100.0 2.3E-42 4.9E-47 389.7 24.9 206 761-977 42-261 (400)
250 cd03264 ABC_drug_resistance_li 100.0 1.7E-42 3.6E-47 364.0 22.3 203 745-963 1-211 (211)
251 PRK10619 histidine/lysine/argi 100.0 3.1E-42 6.6E-47 372.9 24.9 219 742-973 3-244 (257)
252 PRK10851 sulfate/thiosulfate t 100.0 1.8E-42 4E-47 387.3 24.0 215 100-326 3-227 (353)
253 cd03266 ABC_NatA_sodium_export 100.0 1.9E-42 4E-47 365.7 22.7 207 745-963 2-218 (218)
254 PRK13652 cbiO cobalt transport 100.0 3E-42 6.5E-47 376.3 24.9 214 745-971 4-228 (277)
255 PRK13634 cbiO cobalt transport 100.0 2.4E-42 5.2E-47 379.0 24.2 220 100-326 3-236 (290)
256 PRK13646 cbiO cobalt transport 100.0 2.9E-42 6.3E-47 377.9 24.6 220 100-326 3-236 (286)
257 PRK14269 phosphate ABC transpo 100.0 1.8E-42 4E-47 372.1 22.6 217 100-326 3-231 (246)
258 cd03268 ABC_BcrA_bacitracin_re 100.0 2E-42 4.4E-47 362.5 22.4 203 745-963 1-208 (208)
259 PRK10575 iron-hydroxamate tran 100.0 2.7E-42 5.8E-47 374.7 23.8 221 744-980 11-245 (265)
260 TIGR03411 urea_trans_UrtD urea 100.0 3.2E-42 7E-47 369.9 24.1 212 745-970 3-231 (242)
261 cd03265 ABC_DrrA DrrA is the A 100.0 2.5E-42 5.3E-47 365.0 22.8 209 745-968 1-219 (220)
262 PRK11607 potG putrescine trans 100.0 4.3E-42 9.4E-47 386.7 26.2 220 743-978 18-247 (377)
263 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.3E-42 2.7E-47 367.0 20.4 204 745-959 1-218 (218)
264 cd03247 ABCC_cytochrome_bd The 100.0 2.1E-42 4.6E-47 352.6 21.4 178 745-963 1-178 (178)
265 PRK13537 nodulation ABC transp 100.0 2.5E-42 5.4E-47 380.7 23.6 213 744-971 7-228 (306)
266 COG0410 LivF ABC-type branched 100.0 3.6E-42 7.7E-47 343.6 22.3 221 99-327 3-228 (237)
267 PRK13644 cbiO cobalt transport 100.0 4.4E-42 9.5E-47 374.1 25.0 214 745-971 2-225 (274)
268 cd03218 ABC_YhbG The ABC trans 100.0 3E-42 6.5E-47 367.8 23.3 213 745-971 1-223 (232)
269 TIGR00960 3a0501s02 Type II (G 100.0 1E-42 2.2E-47 366.9 19.5 207 100-314 2-216 (216)
270 cd03256 ABC_PhnC_transporter A 100.0 2.7E-42 5.9E-47 370.4 23.0 221 100-324 1-233 (241)
271 PRK14238 phosphate transporter 100.0 4.4E-42 9.6E-47 373.7 24.8 223 744-976 24-261 (271)
272 PRK13648 cbiO cobalt transport 100.0 4.9E-42 1.1E-46 373.5 25.1 216 744-971 7-232 (269)
273 cd03296 ABC_CysA_sulfate_impor 100.0 2E-42 4.4E-47 370.3 21.8 214 100-325 3-226 (239)
274 COG1118 CysA ABC-type sulfate/ 100.0 1.4E-42 3E-47 357.4 19.3 217 744-976 2-233 (345)
275 PRK13537 nodulation ABC transp 100.0 2.3E-42 5.1E-47 380.9 22.7 218 98-326 6-228 (306)
276 PRK14260 phosphate ABC transpo 100.0 4.8E-42 1E-46 371.6 24.4 223 743-975 6-248 (259)
277 PRK14261 phosphate ABC transpo 100.0 5.5E-42 1.2E-46 370.3 24.7 228 744-981 6-248 (253)
278 TIGR02211 LolD_lipo_ex lipopro 100.0 3.6E-42 7.7E-47 364.4 22.7 205 745-960 2-220 (221)
279 PRK11264 putative amino-acid A 100.0 4.6E-42 9.9E-47 370.5 24.0 218 745-976 4-239 (250)
280 PRK13651 cobalt transporter AT 100.0 3.6E-42 7.7E-47 378.5 23.5 220 100-326 3-255 (305)
281 COG4555 NatA ABC-type Na+ tran 100.0 5.9E-43 1.3E-47 338.0 15.1 220 100-327 2-224 (245)
282 PRK14243 phosphate transporter 100.0 7.6E-42 1.6E-46 370.7 25.7 223 744-976 10-254 (264)
283 cd03259 ABC_Carb_Solutes_like 100.0 1.7E-42 3.7E-47 364.4 20.0 207 100-318 1-213 (213)
284 PRK14249 phosphate ABC transpo 100.0 6.8E-42 1.5E-46 369.1 25.1 220 744-973 4-238 (251)
285 PRK13635 cbiO cobalt transport 100.0 4.9E-42 1.1E-46 374.4 24.2 220 99-326 5-230 (279)
286 PRK14250 phosphate ABC transpo 100.0 5.5E-42 1.2E-46 367.1 24.1 216 99-326 3-222 (241)
287 PRK09493 glnQ glutamine ABC tr 100.0 5.7E-42 1.2E-46 367.3 24.3 214 745-972 2-227 (240)
288 TIGR02769 nickel_nikE nickel i 100.0 7.3E-42 1.6E-46 371.3 25.4 226 745-980 3-250 (265)
289 PRK14270 phosphate ABC transpo 100.0 7.2E-42 1.6E-46 368.9 25.1 220 744-973 4-238 (251)
290 PRK13647 cbiO cobalt transport 100.0 4.3E-42 9.3E-47 374.1 23.6 216 99-323 4-225 (274)
291 cd03224 ABC_TM1139_LivF_branch 100.0 3.3E-42 7.2E-47 365.0 22.0 216 100-324 1-220 (222)
292 cd03258 ABC_MetN_methionine_tr 100.0 3.1E-42 6.7E-47 367.8 21.9 219 100-325 2-230 (233)
293 PRK14266 phosphate ABC transpo 100.0 8.9E-42 1.9E-46 368.1 25.5 224 744-977 3-241 (250)
294 PRK11022 dppD dipeptide transp 100.0 6.7E-42 1.4E-46 379.9 25.2 228 744-979 3-252 (326)
295 TIGR02315 ABC_phnC phosphonate 100.0 4.9E-42 1.1E-46 368.8 23.3 221 100-324 2-234 (243)
296 PRK11124 artP arginine transpo 100.0 6.3E-42 1.4E-46 367.4 24.0 214 744-971 2-231 (242)
297 TIGR00972 3a0107s01c2 phosphat 100.0 5.7E-42 1.2E-46 368.8 23.7 216 100-325 2-232 (247)
298 PRK09536 btuD corrinoid ABC tr 100.0 3.5E-42 7.6E-47 388.4 23.0 222 99-326 3-229 (402)
299 PRK11614 livF leucine/isoleuci 100.0 6.5E-42 1.4E-46 366.1 23.9 214 744-971 5-227 (237)
300 cd03301 ABC_MalK_N The N-termi 100.0 3.1E-42 6.8E-47 362.6 21.1 203 745-963 1-213 (213)
301 PRK09473 oppD oligopeptide tra 100.0 5.7E-42 1.2E-46 380.7 24.3 228 744-979 12-260 (330)
302 COG4175 ProV ABC-type proline/ 100.0 1.3E-42 2.7E-47 357.3 17.3 218 99-327 4-256 (386)
303 TIGR03415 ABC_choXWV_ATP choli 100.0 5.7E-42 1.2E-46 383.5 24.1 209 760-979 37-263 (382)
304 PRK11607 potG putrescine trans 100.0 6.5E-42 1.4E-46 385.2 24.7 217 98-326 18-240 (377)
305 PRK13645 cbiO cobalt transport 100.0 7.9E-42 1.7E-46 375.6 24.7 220 742-971 4-241 (289)
306 PRK14242 phosphate transporter 100.0 4.1E-42 9E-47 371.4 22.0 218 99-326 6-238 (253)
307 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.1E-42 6.6E-47 364.3 20.5 205 745-965 1-218 (220)
308 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.1E-41 2.4E-46 356.5 24.5 202 98-319 5-206 (207)
309 PRK13641 cbiO cobalt transport 100.0 1E-41 2.2E-46 373.8 25.3 217 744-971 2-235 (287)
310 PRK11000 maltose/maltodextrin 100.0 4.8E-42 1E-46 387.2 23.3 216 99-326 3-224 (369)
311 PRK14275 phosphate ABC transpo 100.0 8.4E-42 1.8E-46 373.9 24.5 227 743-979 38-279 (286)
312 TIGR03410 urea_trans_UrtE urea 100.0 2.6E-42 5.6E-47 367.6 19.9 211 745-968 1-219 (230)
313 PRK11231 fecE iron-dicitrate t 100.0 7.4E-42 1.6E-46 369.5 23.8 221 745-981 3-236 (255)
314 PRK11247 ssuB aliphatic sulfon 100.0 8.1E-42 1.8E-46 367.1 23.9 204 744-966 12-219 (257)
315 PRK14271 phosphate ABC transpo 100.0 1.5E-41 3.3E-46 369.9 26.3 221 744-974 21-255 (276)
316 cd03225 ABC_cobalt_CbiO_domain 100.0 4.2E-42 9.1E-47 361.1 21.2 201 746-958 1-211 (211)
317 cd03295 ABC_OpuCA_Osmoprotecti 100.0 5E-42 1.1E-46 368.0 22.1 217 100-325 1-225 (242)
318 cd03300 ABC_PotA_N PotA is an 100.0 5E-42 1.1E-46 365.4 21.9 212 745-972 1-222 (232)
319 PRK14252 phosphate ABC transpo 100.0 1.5E-41 3.2E-46 369.2 25.9 225 740-974 12-253 (265)
320 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 9.4E-42 2E-46 364.4 23.8 216 100-326 2-222 (236)
321 cd03263 ABC_subfamily_A The AB 100.0 4.4E-42 9.5E-47 363.4 21.0 215 100-323 1-219 (220)
322 cd03291 ABCC_CFTR1 The CFTR su 100.0 5E-41 1.1E-45 364.4 29.7 237 71-330 15-252 (282)
323 PRK13649 cbiO cobalt transport 100.0 1E-41 2.3E-46 373.4 24.6 217 745-971 3-235 (280)
324 TIGR02673 FtsE cell division A 100.0 4.7E-42 1E-46 361.6 20.9 201 745-958 2-214 (214)
325 cd03292 ABC_FtsE_transporter F 100.0 5.4E-42 1.2E-46 361.2 21.5 202 745-959 1-214 (214)
326 PRK13638 cbiO cobalt transport 100.0 8.2E-42 1.8E-46 372.1 23.5 213 745-971 2-226 (271)
327 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.2E-42 6.8E-47 364.0 19.6 208 100-314 1-218 (218)
328 PRK11629 lolD lipoprotein tran 100.0 9.5E-42 2.1E-46 363.7 23.4 214 99-319 5-228 (233)
329 PRK14263 phosphate ABC transpo 100.0 1.6E-41 3.6E-46 366.8 25.6 225 744-978 8-253 (261)
330 cd03218 ABC_YhbG The ABC trans 100.0 5.7E-42 1.2E-46 365.6 21.7 216 100-325 1-222 (232)
331 PRK14258 phosphate ABC transpo 100.0 1.2E-41 2.6E-46 368.7 24.5 223 743-975 6-250 (261)
332 TIGR00968 3a0106s01 sulfate AB 100.0 1.5E-41 3.2E-46 362.7 24.8 212 745-972 1-222 (237)
333 PRK14241 phosphate transporter 100.0 1.2E-41 2.5E-46 368.6 24.3 219 744-972 4-244 (258)
334 PRK14273 phosphate ABC transpo 100.0 8E-42 1.7E-46 369.2 23.0 218 99-326 7-239 (254)
335 PRK14253 phosphate ABC transpo 100.0 1.6E-41 3.5E-46 365.9 25.2 221 744-974 3-237 (249)
336 PRK14272 phosphate ABC transpo 100.0 1.1E-41 2.4E-46 368.0 23.7 225 744-978 4-244 (252)
337 cd03265 ABC_DrrA DrrA is the A 100.0 7.2E-42 1.6E-46 361.5 21.7 213 100-323 1-219 (220)
338 PRK10744 pstB phosphate transp 100.0 9.9E-42 2.1E-46 369.4 23.2 220 97-326 11-245 (260)
339 cd03235 ABC_Metallic_Cations A 100.0 4.7E-42 1E-46 361.1 20.0 198 746-963 1-213 (213)
340 PRK15112 antimicrobial peptide 100.0 1.7E-41 3.7E-46 368.5 25.0 229 744-983 4-253 (267)
341 PRK13548 hmuV hemin importer A 100.0 2.2E-41 4.8E-46 365.8 25.5 213 745-971 3-231 (258)
342 PRK13639 cbiO cobalt transport 100.0 1.5E-41 3.2E-46 370.4 24.3 214 745-971 2-227 (275)
343 cd03226 ABC_cobalt_CbiO_domain 100.0 3.9E-42 8.5E-47 359.3 19.0 199 101-315 1-205 (205)
344 PRK13636 cbiO cobalt transport 100.0 1.2E-41 2.6E-46 372.4 23.7 219 99-326 5-232 (283)
345 cd03266 ABC_NatA_sodium_export 100.0 7E-42 1.5E-46 361.3 21.1 211 100-318 2-218 (218)
346 PRK13642 cbiO cobalt transport 100.0 2.3E-41 5E-46 369.3 25.8 221 99-326 4-230 (277)
347 PRK14246 phosphate ABC transpo 100.0 2E-41 4.4E-46 365.3 25.0 227 744-980 10-251 (257)
348 cd03290 ABCC_SUR1_N The SUR do 100.0 2E-41 4.3E-46 357.6 24.3 210 746-958 2-218 (218)
349 TIGR01288 nodI ATP-binding ABC 100.0 1.3E-41 2.7E-46 376.0 23.7 213 744-971 4-225 (303)
350 cd03264 ABC_drug_resistance_li 100.0 6.7E-42 1.4E-46 359.4 20.4 207 100-318 1-211 (211)
351 PRK13536 nodulation factor exp 100.0 1.1E-41 2.3E-46 379.2 23.2 218 98-326 40-262 (340)
352 PRK10253 iron-enterobactin tra 100.0 2E-41 4.4E-46 367.8 24.6 214 744-971 7-234 (265)
353 TIGR02211 LolD_lipo_ex lipopro 100.0 1.1E-41 2.4E-46 360.5 21.9 209 100-315 2-220 (221)
354 PRK10584 putative ABC transpor 100.0 1.7E-41 3.6E-46 360.9 23.3 208 744-962 6-227 (228)
355 cd03246 ABCC_Protease_Secretio 100.0 1.3E-41 2.8E-46 344.9 21.3 172 745-959 1-173 (173)
356 PRK14255 phosphate ABC transpo 100.0 2.2E-41 4.7E-46 365.6 24.3 223 744-976 5-242 (252)
357 PRK15093 antimicrobial peptide 100.0 2.4E-41 5.2E-46 376.9 25.4 228 744-979 3-257 (330)
358 TIGR01288 nodI ATP-binding ABC 100.0 1.1E-41 2.4E-46 376.4 22.5 216 99-325 4-224 (303)
359 cd03299 ABC_ModC_like Archeal 100.0 2.3E-41 4.9E-46 360.9 24.0 211 745-972 1-221 (235)
360 cd03250 ABCC_MRP_domain1 Domai 100.0 1.9E-41 4.1E-46 353.9 23.0 200 100-313 1-204 (204)
361 TIGR03873 F420-0_ABC_ATP propo 100.0 2E-41 4.3E-46 366.4 23.9 212 745-970 2-226 (256)
362 PRK11300 livG leucine/isoleuci 100.0 2.2E-41 4.8E-46 366.3 24.2 214 744-971 5-244 (255)
363 cd03268 ABC_BcrA_bacitracin_re 100.0 9.8E-42 2.1E-46 357.3 20.8 203 100-318 1-208 (208)
364 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.7E-41 3.8E-46 356.3 22.7 201 745-963 1-211 (211)
365 TIGR03522 GldA_ABC_ATP gliding 100.0 1.7E-41 3.8E-46 374.2 23.7 212 745-971 3-222 (301)
366 PRK14235 phosphate transporter 100.0 1.5E-41 3.3E-46 368.9 22.7 218 98-325 18-251 (267)
367 PRK10771 thiQ thiamine transpo 100.0 3E-41 6.6E-46 359.6 24.6 209 745-971 2-220 (232)
368 PRK13644 cbiO cobalt transport 100.0 2E-41 4.3E-46 368.9 23.6 217 100-325 2-224 (274)
369 PRK15079 oligopeptide ABC tran 100.0 2.4E-41 5.2E-46 375.4 24.6 223 98-327 7-253 (331)
370 PRK13632 cbiO cobalt transport 100.0 2.6E-41 5.7E-46 367.9 24.4 220 99-326 7-232 (271)
371 PRK09493 glnQ glutamine ABC tr 100.0 1.4E-41 3.1E-46 364.2 21.9 216 100-325 2-225 (240)
372 cd03294 ABC_Pro_Gly_Bertaine T 100.0 7.7E-42 1.7E-46 371.4 20.0 216 101-326 26-251 (269)
373 PRK10895 lipopolysaccharide AB 100.0 3.7E-41 8E-46 361.2 24.9 214 744-971 3-227 (241)
374 PRK13536 nodulation factor exp 100.0 1.9E-41 4E-46 377.2 23.3 213 744-971 41-262 (340)
375 PRK10247 putative ABC transpor 100.0 1.7E-41 3.8E-46 359.3 21.9 210 744-966 7-223 (225)
376 PRK11614 livF leucine/isoleuci 100.0 2.2E-41 4.7E-46 362.1 22.9 218 99-325 5-226 (237)
377 PRK10070 glycine betaine trans 100.0 1.9E-41 4.2E-46 382.1 23.6 221 99-326 4-255 (400)
378 PRK14247 phosphate ABC transpo 100.0 2E-41 4.4E-46 365.4 22.8 218 99-326 3-235 (250)
379 PRK11831 putative ABC transpor 100.0 1.4E-41 3E-46 369.7 21.5 218 99-326 7-234 (269)
380 PRK13641 cbiO cobalt transport 100.0 2.5E-41 5.4E-46 370.7 23.6 220 100-326 3-235 (287)
381 PRK10908 cell division protein 100.0 2.7E-41 6E-46 357.5 23.1 204 745-961 2-217 (222)
382 PRK11144 modC molybdate transp 100.0 2.8E-41 6.2E-46 379.3 24.6 213 745-974 2-222 (352)
383 PRK14265 phosphate ABC transpo 100.0 8E-41 1.7E-45 364.1 27.4 220 744-973 20-261 (274)
384 PRK14259 phosphate ABC transpo 100.0 3E-41 6.5E-46 366.7 24.0 219 98-326 12-254 (269)
385 cd03269 ABC_putative_ATPase Th 100.0 1.9E-41 4.1E-46 355.7 21.5 201 745-963 1-210 (210)
386 PRK00349 uvrA excinuclease ABC 100.0 1.9E-40 4.1E-45 405.3 33.6 109 872-980 818-937 (943)
387 PRK14264 phosphate ABC transpo 100.0 5.3E-41 1.2E-45 370.7 26.0 221 743-973 44-292 (305)
388 PRK14267 phosphate ABC transpo 100.0 1.5E-41 3.3E-46 366.9 21.3 220 99-326 4-238 (253)
389 PRK11701 phnK phosphonate C-P 100.0 5.6E-41 1.2E-45 363.3 25.7 224 744-980 6-251 (258)
390 PRK13648 cbiO cobalt transport 100.0 5.1E-41 1.1E-45 365.5 25.4 220 99-326 7-232 (269)
391 PRK10895 lipopolysaccharide AB 100.0 2.6E-41 5.6E-46 362.4 22.8 217 99-325 3-226 (241)
392 COG1131 CcmA ABC-type multidru 100.0 1.8E-41 3.9E-46 370.0 21.8 214 99-326 4-227 (293)
393 COG1137 YhbG ABC-type (unclass 100.0 1.9E-42 4E-47 334.1 12.4 223 99-327 4-230 (243)
394 PRK13633 cobalt transporter AT 100.0 3.3E-41 7.1E-46 368.7 23.9 221 99-326 4-234 (280)
395 PRK10575 iron-hydroxamate tran 100.0 2.3E-41 5.1E-46 367.3 22.6 213 99-325 11-237 (265)
396 TIGR03411 urea_trans_UrtD urea 100.0 3.7E-41 7.9E-46 361.7 23.8 221 100-325 3-231 (242)
397 cd03247 ABCC_cytochrome_bd The 100.0 2E-41 4.3E-46 345.4 20.6 178 100-318 1-178 (178)
398 cd03257 ABC_NikE_OppD_transpor 100.0 4.7E-41 1E-45 357.8 24.1 209 745-963 2-228 (228)
399 PRK13652 cbiO cobalt transport 100.0 4.6E-41 1E-45 366.9 24.5 219 99-326 3-228 (277)
400 TIGR03522 GldA_ABC_ATP gliding 100.0 2.6E-41 5.6E-46 372.8 22.7 216 100-326 3-222 (301)
401 PRK13645 cbiO cobalt transport 100.0 4.3E-41 9.3E-46 369.7 24.4 222 98-326 5-241 (289)
402 PRK11264 putative amino-acid A 100.0 4.6E-41 1E-45 362.7 24.1 218 99-326 3-234 (250)
403 TIGR03410 urea_trans_UrtE urea 100.0 2.3E-41 5E-46 360.3 21.5 214 100-323 1-219 (230)
404 TIGR02769 nickel_nikE nickel i 100.0 2.6E-41 5.6E-46 367.0 22.2 220 100-326 3-241 (265)
405 PRK11247 ssuB aliphatic sulfon 100.0 3.5E-41 7.6E-46 362.1 23.0 205 98-321 11-219 (257)
406 cd03257 ABC_NikE_OppD_transpor 100.0 2.3E-41 4.9E-46 360.2 21.4 213 100-318 2-228 (228)
407 cd03262 ABC_HisP_GlnQ_permease 100.0 1.8E-41 4E-46 356.9 20.3 201 745-959 1-213 (213)
408 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.6E-41 3.5E-46 358.7 19.9 209 100-320 1-218 (220)
409 PRK13640 cbiO cobalt transport 100.0 4.8E-41 1E-45 367.5 24.0 220 99-326 5-233 (282)
410 cd03301 ABC_MalK_N The N-termi 100.0 2E-41 4.4E-46 356.4 20.2 207 100-318 1-213 (213)
411 PRK14248 phosphate ABC transpo 100.0 5.2E-41 1.1E-45 365.5 24.1 221 98-326 20-253 (268)
412 PRK13649 cbiO cobalt transport 100.0 4E-41 8.6E-46 368.8 23.2 220 100-326 3-235 (280)
413 PRK14268 phosphate ABC transpo 100.0 3.8E-41 8.2E-46 364.4 22.6 220 99-326 12-243 (258)
414 PRK13547 hmuV hemin importer A 100.0 7.1E-41 1.5E-45 362.9 24.6 212 745-970 2-244 (272)
415 TIGR03005 ectoine_ehuA ectoine 100.0 3.2E-41 6.8E-46 364.1 21.8 217 100-326 1-237 (252)
416 PRK11231 fecE iron-dicitrate t 100.0 3.4E-41 7.4E-46 364.3 22.1 216 100-325 3-227 (255)
417 PRK10247 putative ABC transpor 100.0 3.7E-41 8E-46 356.8 21.9 213 99-321 7-223 (225)
418 TIGR03415 ABC_choXWV_ATP choli 100.0 3.5E-41 7.6E-46 377.2 22.8 205 115-326 37-255 (382)
419 PRK10418 nikD nickel transport 100.0 8.1E-41 1.8E-45 360.9 24.9 226 744-983 4-244 (254)
420 PRK14249 phosphate ABC transpo 100.0 6.3E-41 1.4E-45 361.5 23.9 218 99-326 4-236 (251)
421 COG0411 LivG ABC-type branched 100.0 1.5E-41 3.3E-46 341.8 17.6 221 100-327 5-241 (250)
422 PRK13638 cbiO cobalt transport 100.0 5.3E-41 1.1E-45 365.8 23.4 217 100-326 2-226 (271)
423 PRK10253 iron-enterobactin tra 100.0 4.6E-41 9.9E-46 365.0 22.7 219 97-325 5-233 (265)
424 PRK10619 histidine/lysine/argi 100.0 4.3E-41 9.3E-46 364.0 22.4 219 98-326 4-242 (257)
425 cd03225 ABC_cobalt_CbiO_domain 100.0 2.1E-41 4.5E-46 355.8 19.2 205 101-313 1-211 (211)
426 PRK14274 phosphate ABC transpo 100.0 6E-41 1.3E-45 363.3 23.2 220 99-326 12-244 (259)
427 TIGR01978 sufC FeS assembly AT 100.0 5.6E-41 1.2E-45 360.7 22.7 213 745-969 1-233 (243)
428 PRK13548 hmuV hemin importer A 100.0 8.1E-41 1.8E-45 361.3 24.0 216 100-325 3-230 (258)
429 TIGR01277 thiQ thiamine ABC tr 100.0 7.9E-41 1.7E-45 351.5 23.2 202 745-964 1-212 (213)
430 cd03246 ABCC_Protease_Secretio 100.0 4.6E-41 1E-45 340.9 20.6 172 100-314 1-173 (173)
431 TIGR02673 FtsE cell division A 100.0 2.7E-41 5.8E-46 355.8 19.5 205 100-313 2-214 (214)
432 cd03290 ABCC_SUR1_N The SUR do 100.0 9.9E-41 2.1E-45 352.3 23.7 210 101-313 2-218 (218)
433 PRK11124 artP arginine transpo 100.0 6E-41 1.3E-45 359.8 22.3 215 100-324 3-229 (242)
434 PRK09984 phosphonate/organopho 100.0 1.2E-40 2.7E-45 361.5 24.9 223 744-983 4-252 (262)
435 PRK14245 phosphate ABC transpo 100.0 6.9E-41 1.5E-45 361.0 22.7 220 99-326 3-235 (250)
436 PRK14240 phosphate transporter 100.0 7.6E-41 1.6E-45 360.9 23.0 217 99-325 3-234 (250)
437 cd03292 ABC_FtsE_transporter F 100.0 4.1E-41 8.8E-46 354.5 20.3 206 100-314 1-214 (214)
438 TIGR01188 drrA daunorubicin re 100.0 5.1E-41 1.1E-45 371.0 22.0 200 760-971 6-214 (302)
439 PRK11300 livG leucine/isoleuci 100.0 8.1E-41 1.8E-45 361.9 23.1 222 99-325 5-243 (255)
440 PRK14237 phosphate transporter 100.0 1E-40 2.3E-45 362.4 23.9 222 97-326 18-252 (267)
441 PRK10584 putative ABC transpor 100.0 8.3E-41 1.8E-45 355.5 22.6 212 99-317 6-227 (228)
442 COG0410 LivF ABC-type branched 100.0 8.2E-41 1.8E-45 333.9 20.9 221 744-972 3-228 (237)
443 PRK14236 phosphate transporter 100.0 9.3E-41 2E-45 363.8 23.4 220 97-326 23-257 (272)
444 PRK11308 dppF dipeptide transp 100.0 8E-41 1.7E-45 371.1 23.0 222 99-327 5-246 (327)
445 cd03235 ABC_Metallic_Cations A 100.0 2.6E-41 5.6E-46 355.5 18.1 201 102-318 2-213 (213)
446 PRK14251 phosphate ABC transpo 100.0 4.9E-41 1.1E-45 362.6 20.7 218 99-326 4-236 (251)
447 PRK13639 cbiO cobalt transport 100.0 1.1E-40 2.4E-45 363.5 23.6 218 100-326 2-227 (275)
448 TIGR03873 F420-0_ABC_ATP propo 100.0 7.5E-41 1.6E-45 361.9 21.9 221 100-325 2-226 (256)
449 PRK14243 phosphate transporter 100.0 1.2E-40 2.6E-45 361.3 23.5 218 99-326 10-249 (264)
450 COG1131 CcmA ABC-type multidru 100.0 8.2E-41 1.8E-45 364.8 22.3 214 744-971 4-227 (293)
451 TIGR02142 modC_ABC molybdenum 100.0 1E-40 2.3E-45 375.5 23.7 213 749-977 4-228 (354)
452 PRK14238 phosphate transporter 100.0 9.9E-41 2.1E-45 363.1 22.7 220 99-326 24-256 (271)
453 PRK14261 phosphate ABC transpo 100.0 1.1E-40 2.4E-45 360.1 22.8 220 99-326 6-238 (253)
454 cd03269 ABC_putative_ATPase Th 100.0 4.2E-41 9.1E-46 353.1 18.9 205 100-318 1-210 (210)
455 PRK10908 cell division protein 100.0 1.1E-40 2.4E-45 353.0 21.8 208 100-316 2-217 (222)
456 PRK14239 phosphate transporter 100.0 1.1E-40 2.3E-45 360.3 22.2 220 99-326 5-237 (252)
457 PRK11022 dppD dipeptide transp 100.0 9.7E-41 2.1E-45 370.6 22.4 222 99-327 3-245 (326)
458 PRK14254 phosphate ABC transpo 100.0 1.7E-40 3.6E-45 363.2 23.6 219 97-325 37-269 (285)
459 PRK11144 modC molybdate transp 100.0 1.1E-40 2.4E-45 374.6 22.7 211 100-327 2-220 (352)
460 PRK14253 phosphate ABC transpo 100.0 1.3E-40 2.9E-45 358.8 22.4 217 99-325 3-233 (249)
461 cd03262 ABC_HisP_GlnQ_permease 100.0 5.5E-41 1.2E-45 353.3 19.0 205 100-314 1-213 (213)
462 PRK14271 phosphate ABC transpo 100.0 1.4E-40 3E-45 362.4 22.8 220 99-326 21-252 (276)
463 PRK09473 oppD oligopeptide tra 100.0 1.1E-40 2.3E-45 370.6 22.0 223 99-327 12-253 (330)
464 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.4E-40 2.9E-45 349.5 21.7 201 100-318 1-211 (211)
465 PRK14270 phosphate ABC transpo 100.0 1.7E-40 3.7E-45 358.2 22.9 218 99-326 4-236 (251)
466 TIGR01188 drrA daunorubicin re 100.0 8.5E-41 1.8E-45 369.2 21.0 204 115-326 6-214 (302)
467 cd03234 ABCG_White The White s 100.0 7.2E-41 1.6E-45 355.2 19.5 205 745-963 4-226 (226)
468 PRK14244 phosphate ABC transpo 100.0 6.2E-41 1.4E-45 361.6 19.3 217 100-326 6-238 (251)
469 PRK14256 phosphate ABC transpo 100.0 2E-40 4.3E-45 357.9 23.1 219 98-326 3-237 (252)
470 PRK10419 nikE nickel transport 100.0 1.8E-40 3.9E-45 360.5 22.8 224 744-979 3-249 (268)
471 PRK13547 hmuV hemin importer A 100.0 1.8E-40 3.9E-45 359.7 22.4 221 100-325 2-244 (272)
472 PRK11248 tauB taurine transpor 100.0 1.7E-40 3.8E-45 357.6 22.2 202 745-965 2-215 (255)
473 TIGR02982 heterocyst_DevA ABC 100.0 2.5E-40 5.4E-45 349.5 22.4 204 745-959 2-219 (220)
474 PRK09984 phosphonate/organopho 100.0 3.5E-40 7.6E-45 357.9 24.1 220 99-323 4-240 (262)
475 PRK10771 thiQ thiamine transpo 100.0 4.5E-40 9.7E-45 350.6 24.4 214 100-326 2-220 (232)
476 PRK14275 phosphate ABC transpo 100.0 3.2E-40 6.8E-45 361.5 23.6 221 98-326 38-271 (286)
477 PRK14241 phosphate transporter 100.0 1.9E-40 4.2E-45 359.1 21.7 220 99-326 4-243 (258)
478 PRK14262 phosphate ABC transpo 100.0 2.5E-40 5.5E-45 356.8 22.3 218 99-326 3-235 (250)
479 PRK14260 phosphate ABC transpo 100.0 2.2E-40 4.7E-45 358.7 21.4 217 99-325 7-243 (259)
480 PRK14272 phosphate ABC transpo 100.0 2.8E-40 6E-45 357.1 22.1 220 99-326 4-237 (252)
481 TIGR01978 sufC FeS assembly AT 100.0 2.6E-40 5.6E-45 355.6 21.4 214 100-323 1-232 (243)
482 PRK11701 phnK phosphonate C-P 100.0 3.7E-40 8E-45 356.9 22.7 218 99-326 6-242 (258)
483 TIGR02323 CP_lyasePhnK phospho 100.0 9.4E-40 2E-44 353.0 25.7 224 744-980 3-248 (253)
484 PRK15112 antimicrobial peptide 100.0 5.4E-40 1.2E-44 356.8 23.7 221 99-326 4-240 (267)
485 PRK14265 phosphate ABC transpo 100.0 6.5E-40 1.4E-44 357.0 24.3 219 98-326 19-259 (274)
486 COG4598 HisP ABC-type histidin 100.0 6.8E-41 1.5E-45 316.5 14.2 217 99-326 6-242 (256)
487 PRK11248 tauB taurine transpor 100.0 3.5E-40 7.6E-45 355.2 21.7 206 100-320 2-215 (255)
488 TIGR00968 3a0106s01 sulfate AB 100.0 4E-40 8.7E-45 351.7 22.0 214 100-325 1-220 (237)
489 TIGR01277 thiQ thiamine ABC tr 100.0 4.6E-40 1E-44 345.7 22.0 202 100-319 1-212 (213)
490 COG4619 ABC-type uncharacteriz 100.0 6.5E-41 1.4E-45 313.6 13.7 195 114-314 15-212 (223)
491 TIGR03740 galliderm_ABC gallid 100.0 4.7E-40 1E-44 348.4 22.2 205 745-967 1-210 (223)
492 PRK15093 antimicrobial peptide 100.0 3.9E-40 8.5E-45 367.2 22.6 227 99-332 3-256 (330)
493 cd03228 ABCC_MRP_Like The MRP 100.0 4.8E-40 1E-44 332.8 21.0 171 745-958 1-171 (171)
494 PRK14252 phosphate ABC transpo 100.0 4.8E-40 1E-44 357.3 22.4 218 98-325 15-249 (265)
495 cd03233 ABC_PDR_domain1 The pl 100.0 5.4E-40 1.2E-44 341.4 21.7 191 744-963 3-202 (202)
496 cd03230 ABC_DR_subfamily_A Thi 100.0 4.3E-40 9.4E-45 333.7 20.3 170 745-959 1-173 (173)
497 cd03234 ABCG_White The White s 100.0 3.5E-40 7.6E-45 349.9 20.4 214 100-318 4-226 (226)
498 TIGR02142 modC_ABC molybdenum 100.0 5.4E-40 1.2E-44 369.6 23.1 211 104-326 4-222 (354)
499 COG0444 DppD ABC-type dipeptid 100.0 7E-40 1.5E-44 344.7 22.4 228 745-980 2-253 (316)
500 PRK14266 phosphate ABC transpo 100.0 5.5E-40 1.2E-44 354.2 22.3 218 99-326 3-235 (250)
No 1
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.6e-185 Score=1641.04 Aligned_cols=974 Identities=53% Similarity=0.863 Sum_probs=885.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001980 2 AKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKP 81 (987)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~ 81 (987)
+.+...|+++++.+.++++.+|||+.++..+..++|++++++++++.....+++..+.+..+..+++|+.+|++.++..|
T Consensus 253 ~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~ 332 (1228)
T KOG0055|consen 253 FKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKP 332 (1228)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCC
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 001980 82 SIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL 161 (987)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~ 161 (987)
.+++............+.|+++||+|+||.+++.++|+|+||+|++|+.+||||||||||||++++|.|+|+|++|+|.+
T Consensus 333 ~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~i 412 (1228)
T KOG0055|consen 333 SIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLI 412 (1228)
T ss_pred CCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEE
Confidence 76544323333445678899999999999999889999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCCh
Q 001980 162 DNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSG 241 (987)
Q Consensus 162 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg 241 (987)
||.|++.++.+|+|.+||.|.|+|.||++||+|||.||+|+++.+++.++|+.+++++++..+|+|++|.+||+|.+|||
T Consensus 413 dG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSG 492 (1228)
T KOG0055|consen 413 DGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSG 492 (1228)
T ss_pred cCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChH
Q 001980 242 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 242 GqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~ 321 (987)
||||||||||||++||+||||||||||||+++++.++++|++..+|+|.|+|+||++++++||+|++|++|+|+|.|+|+
T Consensus 493 GQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ 572 (1228)
T KOG0055|consen 493 GQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHD 572 (1228)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCC
Q 001980 322 ELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKN 401 (987)
Q Consensus 322 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (987)
||++..|.|.++.+.|+.....+..+.+.+.......+...+... ....+.. ..........+ .++.+.....
T Consensus 573 ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~-----~~~~~~~-~~~~~~~~~~~-~e~~~~~~~~ 645 (1228)
T KOG0055|consen 573 ELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSS-----PSLSRGS-NRSNLLSVKPE-GEDPEEPVSE 645 (1228)
T ss_pred HHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhcccccccc-----ccccCCc-ccccccccccc-cccccccccc
Confidence 999999999999998876543221000000000000000000000 0000000 00000000000 0000000011
Q ss_pred CCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHH
Q 001980 402 PAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYL 481 (987)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (987)
.....++++++++.+|.|++++++++++++.|+..|++++.++.++..+...+++.+......|.++|+++++...++.+
T Consensus 646 ~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~ 725 (1228)
T KOG0055|consen 646 EDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNF 725 (1228)
T ss_pred ccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12566789999999999999999999999999999999999999999888666555555555699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 482 IQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAF 561 (987)
Q Consensus 482 ~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 561 (987)
++.++|...+++++.++|.++|++++++++.|||.++|. |.+.+|+.+|...++..+...+..+++++.+++.++++.|
T Consensus 726 ~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf 804 (1228)
T KOG0055|consen 726 LQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF 804 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHH
Q 001980 562 IVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQT 641 (987)
Q Consensus 562 ~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~ 641 (987)
+++|++++++++++|++++..+.+.+++....++......+......|++++++||++|+.|+++.+.|.+.++...+..
T Consensus 805 ~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 805 IYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 642 LRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFST 721 (987)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~ 721 (987)
.+++.+.++.+++++.+.++.+++.+|+|.+|+..|.+++.+++.+++++.+.+..+++..++.|++.++..++.+++++
T Consensus 885 ~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i 964 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEI 964 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC
Q 001980 722 LDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801 (987)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~ 801 (987)
+++++..+++.+.+...++.+|+|+|+||+|+||.+|+.+||+|+||+|++||++||||||||||||++.+|.|||||.+
T Consensus 965 ~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~ 1044 (1228)
T KOG0055|consen 965 LDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA 1044 (1228)
T ss_pred hcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 99988766654333344568899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCC
Q 001980 802 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERG 881 (987)
Q Consensus 802 G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G 881 (987)
|.|+|||+||+++++++||++|++|.|||.||++||||||.||.++++++|+.+|++.|++|+||.+||+||||+|||+|
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG 1124 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG 1124 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc
Confidence 99999999999999999999999999999999999999999996668999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEE
Q 001980 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVE 961 (987)
Q Consensus 882 ~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive 961 (987)
.+||||||||||||||++||||||||||||||||.++|+.||++|++...|||+|+|||||+||++||.|+|+++|+|+|
T Consensus 1125 ~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1125 VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVE 1204 (1228)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhcCCCchHHHHHHhhh
Q 001980 962 QGSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 962 ~Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
+|||++|+++ +|.|++|++.|.
T Consensus 1205 ~GtH~~L~~~-~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1205 QGTHDELLAK-RGIYFRLVQLQS 1226 (1228)
T ss_pred cccHHHHHhC-CCchHHHhhhcc
Confidence 9999999995 999999999885
No 2
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.4e-165 Score=1507.79 Aligned_cols=927 Identities=24% Similarity=0.346 Sum_probs=754.8
Q ss_pred HHHHHHHHH-HHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCc
Q 001980 20 LVFWYAGVF-IRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNG 98 (987)
Q Consensus 20 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (987)
..+.++++. ..++.+++..+|+++.++..+..|+..+|..+..+.++++|.+|+.+|+..++. +............+.
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~-~~~~~~~~~~~~~~~ 517 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEEL-DPDSVERSPDEAGEN 517 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CccccccCCCCCCCc
Confidence 334556666 567889999999999988888999999999999999999999999999987543 222211112223345
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|.+|+|++....+.|+||||+|++|+++||||++|||||+||.+|+|++++.+|++.++| .+
T Consensus 518 ~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------si 584 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SV 584 (1381)
T ss_pred eEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------eE
Confidence 69999999999874455689999999999999999999999999999999999999999999998 69
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
+||||+||+|++||||||+||.| .+.++++++.+.|.+.+|++.+|.|+.|+|||+|.+|||||||||+||||+|+|+|
T Consensus 585 aYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ad 663 (1381)
T KOG0054|consen 585 AYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDAD 663 (1381)
T ss_pred EEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCC
Confidence 99999999999999999999987 46788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHH-HHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHHH
Q 001980 259 ILLLDEATSALDAGS-ESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 337 (987)
Q Consensus 259 illlDEpts~LD~~~-~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 337 (987)
|||||||+||+|+|+ .+.+.++++.+.++||+|+|||+++++++||+|++|++|+|.+.|+++|+++....+.++....
T Consensus 664 IYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~ 743 (1381)
T KOG0054|consen 664 IYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEE 743 (1381)
T ss_pred EEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhcc
Confidence 999999999999996 5556678878888999999999999999999999999999999999999998888887773322
Q ss_pred HhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchHHHHHHHHhCC
Q 001980 338 EMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAP 417 (987)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (987)
....+........+.. ..+...... .........+... ..........+.+++..+...+..|..|.+.
T Consensus 744 ~~~~~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a 812 (1381)
T KOG0054|consen 744 ESEQEEEASEKDLESG---ESSRESESR-------SLESLSSEEEKSK-DEKEEEDKLVQEEERETGKVSWSVYKKYIKA 812 (1381)
T ss_pred chhhcccccccccccc---ccccchhhh-------hhhhhcccccccc-cccchhhHHHHHHHHhcCEeeHHHHHHHHHh
Confidence 2111111000000000 000000000 0000000000000 0000001111223345666666666666554
Q ss_pred chHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 418 EWPYS--IMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLT 495 (987)
Q Consensus 418 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (987)
.++++ .+.+++.+...++.....+|++.|.+.-...... .....+|+++|.++++...++.+++.+.+...+.+++
T Consensus 813 ~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~--~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS 890 (1381)
T KOG0054|consen 813 AGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT--TVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKAS 890 (1381)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 2233444444455555555555544321110000 0346689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 496 TRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 575 (987)
Q Consensus 496 ~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~ 575 (987)
++||++|+++++|+||+|||+ +|.|+|+|||++|++.+|..+|..+..++++++.+++.++++.+..| +++++++
T Consensus 891 ~~Lh~~ml~~Ilrapm~FFdt--TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P---~fli~~~ 965 (1381)
T KOG0054|consen 891 RKLHDKLLNSILRAPMSFFDT--TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTP---WFLIAII 965 (1381)
T ss_pred HHHHHHHHHHHHhCcchhcCC--CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhH---HHHHHHH
Confidence 999999999999999999996 79999999999999999999999999999999999999998888877 4666777
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001980 576 PLLVLANFAQQLSLKGFAGDTAKAH----AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGIL 651 (987)
Q Consensus 576 pl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (987)
|+.+++++++.+|++. +|+.+|.. +|..+|++|+++|+.|||||+.+++|.+++.+..|.+.+..+.......|+
T Consensus 966 pl~v~~~~~~~~Y~~t-sReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWl 1044 (1381)
T KOG0054|consen 966 PLGVIYYFVQRYYLAT-SRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWL 1044 (1381)
T ss_pred HHHHHHHHHHHHHHHH-hHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8888888888777776 77777764 789999999999999999999999999999999999998877655444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 001980 652 FGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPD 731 (987)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~ 731 (987)
..-..++..+....+..+.+.. ..+.++.|.+...+.+.+.....+...+....++++.+.|+||+.+|.+.++|.+..
T Consensus 1045 a~Rle~ig~~~v~~~al~~vl~-~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~ 1123 (1381)
T KOG0054|consen 1045 AVRLELLGNLVVLIAALFAVLL-PSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLE 1123 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCC
Confidence 4333333333322222222211 122266888888889999999999999999999999999999999999977662211
Q ss_pred CCC--CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCc
Q 001980 732 DPD--AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK 809 (987)
Q Consensus 732 ~~~--~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~ 809 (987)
.+. +++.||.+|+|+|+|++++|.++ .++|||||||+|+||||||||||||||||||+++|+|+.+|.+|+|.|||+
T Consensus 1124 ~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1124 IEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGV 1202 (1381)
T ss_pred CcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCe
Confidence 111 34457999999999999999654 347999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 810 DIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 810 di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
||+++++++||+++++|||||+||+||+|+|||| ..+++|++||+||++|+++++|+++|+|||++|.|+|.|||.|||
T Consensus 1203 dI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP-f~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP-FDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred ecccccHHHHHhcCeeeCCCCceecCccccccCc-ccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence 9999999999999999999999999999999985 567999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHh
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
|++||||||||++|||+||||||++|++||..||++||+.|++||||+||||++||+|||||+|||+|+|+|+|+|++|+
T Consensus 1282 QLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1282 QLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred HHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHhh
Q 001980 970 SRPDGAYSRLLQLQ 983 (987)
Q Consensus 970 ~~~~g~f~~l~~~q 983 (987)
++++|.|++++...
T Consensus 1362 ~~~~S~f~~~l~~~ 1375 (1381)
T KOG0054|consen 1362 SDKDSLFSSLLKEA 1375 (1381)
T ss_pred hCCcchHHHHHHHH
Confidence 99999998776554
No 3
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.7e-149 Score=1434.17 Aligned_cols=976 Identities=32% Similarity=0.539 Sum_probs=796.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHcC--------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 4 GLGLGCTYGIACMSWALVFWYAGVFIRNG--------VTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLME 75 (987)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~ 75 (987)
+...++..++.++++++++|||++++..| .+++|.+++++++.+.....+..+.+.+..++.+..|++|+.+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ 360 (1466)
T PTZ00265 281 SLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYE 360 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888889999999999999985 5788998888877777677777788889999999999999999
Q ss_pred HHhcCCCCCCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC
Q 001980 76 IIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 155 (987)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~ 155 (987)
+++.+++.+... .....+. ...|+++||+|+|+++++.++|+|+||+|++||++||+||||||||||+++|+|+|+|+
T Consensus 361 ii~~~~~~~~~~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~ 438 (1466)
T PTZ00265 361 IINRKPLVENND-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT 438 (1466)
T ss_pred HHcCCCCCCCCC-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC
Confidence 998776532211 1111121 23699999999998654456999999999999999999999999999999999999999
Q ss_pred ccEEEE-CCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCC---------------------------------
Q 001980 156 AGHVLL-DNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP--------------------------------- 201 (987)
Q Consensus 156 ~G~i~~-~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~--------------------------------- 201 (987)
+|+|.+ +|.++++++..++|++|+||+|+|.||++||+|||.+|.+
T Consensus 439 ~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1466)
T PTZ00265 439 EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKC 518 (1466)
T ss_pred CCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccc
Confidence 999999 5799999999999999999999999999999999999742
Q ss_pred ------------------------CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 202 ------------------------EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 202 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
..+++++.++++.+++++++..+|+|++|.+|++|.+|||||||||+|||||+++|
T Consensus 519 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P 598 (1466)
T PTZ00265 519 AGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNP 598 (1466)
T ss_pred cchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 13457889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEeCC-----------------------
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQG----------------------- 312 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G----------------------- 312 (987)
+|||||||||+||+++++.+++.|.++. +|+|+|+||||++.++.||+|++|++|
T Consensus 599 ~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~ 678 (1466)
T PTZ00265 599 KILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENN 678 (1466)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccc
Confidence 9999999999999999999999999985 489999999999999899999999986
Q ss_pred ------------------------EEEEecChHHHHH-hhhhHHHHHHHHHhhhccccCC--CCcccccccccccccccc
Q 001980 313 ------------------------QVVETGTHEELIA-KAGAYASLIRFQEMVRNRDFAN--PSTRRSRSTRLSHSLSTK 365 (987)
Q Consensus 313 ------------------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 365 (987)
+|+|+|+|+||++ .+|.|+.+...|.......... ..................
T Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (1466)
T PTZ00265 679 NKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGY 758 (1466)
T ss_pred cccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccccc
Confidence 5999999999998 6899999987764432111000 000000000000000000
Q ss_pred cccccccc--cccccccccCCCCcccccccccccc-c---------CCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 001980 366 SLSLRSGS--LRNLSYSYSTGADGRIEMVSNAETD-R---------KNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSG 433 (987)
Q Consensus 366 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (987)
........ ....................+.... + ..+.....+.+++++.++.++.++++++++++.+
T Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (1466)
T PTZ00265 759 DPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVAG 838 (1466)
T ss_pred ccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0000000000000000000000000 0 0011111334445555555556778888888999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 001980 434 FIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGW 513 (987)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~f 513 (987)
++.++++++++.+++.++.. .........|.+++++++++..++.+++.++..+.+.++..++|.++|++++++|++|
T Consensus 839 ~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~ 916 (1466)
T PTZ00265 839 GLYPVFALLYAKYVSTLFDF--ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISF 916 (1466)
T ss_pred HHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999998876532 1122234467777888888888999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001980 514 FDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFA 593 (987)
Q Consensus 514 fd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~ 593 (987)
||..++++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++++++++|++...+....+......
T Consensus 917 fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 996 (1466)
T PTZ00265 917 FDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKD 996 (1466)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99877899999999999999999999999999999999999999999999999988776555444333222211111000
Q ss_pred -H-H-------------HHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 594 -G-D-------------TAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFA 658 (987)
Q Consensus 594 -~-~-------------~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (987)
+ . ..+........+.|++.|+++||+|+.|+++.++|.+..+...+...+.....+++.++.+.+
T Consensus 997 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1466)
T PTZ00265 997 VEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSA 1076 (1466)
T ss_pred HHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 112245567889999999999999999999999999999999888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC-
Q 001980 659 LHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEP- 737 (987)
Q Consensus 659 ~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~- 737 (987)
.++..++++|+|.+++..|.++++.++.++.++.+...++..+....+++.++..+.+|++++++.+++.+..+.....
T Consensus 1077 ~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~ 1156 (1466)
T PTZ00265 1077 QLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRI 1156 (1466)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCccccc
Confidence 9999999999999999999999999998887776666678888899999999999999999999876543211111111
Q ss_pred --CCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC----------------
Q 001980 738 --VETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP---------------- 799 (987)
Q Consensus 738 --~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p---------------- 799 (987)
++...|.|+|+||+|+||++|+.+||+|+||+|+|||++||||+||||||||+++|+|||+|
T Consensus 1157 ~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~ 1236 (1466)
T PTZ00265 1157 KNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDM 1236 (1466)
T ss_pred ccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccc
Confidence 12346789999999999877666899999999999999999999999999999999999999
Q ss_pred --------------------------------------CCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHh
Q 001980 800 --------------------------------------TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI 841 (987)
Q Consensus 800 --------------------------------------~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL 841 (987)
++|+|+|||+||+++++++||++|+||||||+||+|||||||
T Consensus 1237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI 1316 (1466)
T PTZ00265 1237 TNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENI 1316 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHH
Confidence 699999999999999999999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001980 842 AYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 921 (987)
Q Consensus 842 ~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~ 921 (987)
.+|.++++|+|+++|++.+++++||.+||+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.
T Consensus 1317 ~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~ 1396 (1466)
T PTZ00265 1317 KFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396 (1466)
T ss_pred hcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeC----CEE-EEecChhHHhcCCCchHHHHHHhh
Q 001980 922 LQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQD----GRI-VEQGSHSELVSRPDGAYSRLLQLQ 983 (987)
Q Consensus 922 I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~----G~i-ve~Gt~~eLl~~~~g~f~~l~~~q 983 (987)
|+++|++.. +++|+|+||||++++++||+|+||++ |++ +|.|+|+||+++++|.|++||+.|
T Consensus 1397 I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1397 IEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 999999984 68999999999999999999999999 995 499999999985589999999876
No 4
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.4e-148 Score=1437.00 Aligned_cols=925 Identities=23% Similarity=0.299 Sum_probs=712.2
Q ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCC
Q 001980 18 WALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVN 97 (987)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 97 (987)
++.++++|++++.+|.++++.+|+++.++..+..|+..++..+..+.++++|++||.++++.++.... . .. ......
T Consensus 536 ~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~-~-~~-~~~~~~ 612 (1622)
T PLN03130 536 LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL-P-NP-PLEPGL 612 (1622)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-c-CC-cccCCC
Confidence 34566889999999999999999998888888899999999999999999999999999976543211 1 00 011112
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCEeCCCCCHHHHhc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA-GHVLLDNVDIKTLQLRWLRD 176 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~-G~i~~~g~~~~~~~~~~~~~ 176 (987)
..|+++|++|+|+.+++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++ |+|.+.|
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~------------- 679 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG------------- 679 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC-------------
Confidence 46999999999985444568999999999999999999999999999999999999999 9998654
Q ss_pred ceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 177 QIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
+|+||+|+||+|++||||||+||.|. ++++++++++.|++.++++.+|+|++|.+||+|.+|||||||||+||||+|++
T Consensus 680 ~Iayv~Q~p~LfngTIreNI~fg~~~-d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 758 (1622)
T PLN03130 680 TVAYVPQVSWIFNATVRDNILFGSPF-DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSN 758 (1622)
T ss_pred eEEEEcCccccCCCCHHHHHhCCCcc-cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999874 68899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHH-HHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQ-EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 335 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~-~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 335 (987)
|+||||||||||||+++++.+. +++.+..+++|+|+|||+++.++.||+|++|++|+|+++|++++++++.+.|..+..
T Consensus 759 ~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~ 838 (1622)
T PLN03130 759 SDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLME 838 (1622)
T ss_pred CCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHH
Confidence 9999999999999999887665 567777789999999999999999999999999999999999999988888887765
Q ss_pred HHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchHHHHHHHHh
Q 001980 336 FQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLN 415 (987)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (987)
.+....+........... ......... ................. ...... ...+++..+...+..|.+|.
T Consensus 839 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~---~~~e~~~~g~v~~~vy~~Y~ 908 (1622)
T PLN03130 839 NAGKMEEYVEENGEEEDD--QTSSKPVAN----GNANNLKKDSSSKKKSK-EGKSVL---IKQEERETGVVSWKVLERYK 908 (1622)
T ss_pred hccccccccccccccccc--ccccccccc----ccccccccccccccccc-ccchhh---hhHHHHhcCccCHHHHHHHH
Confidence 432211110000000000 000000000 00000000000000000 000000 01122223434455555443
Q ss_pred CC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 416 AP--EWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGEN 493 (987)
Q Consensus 416 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (987)
+. .++.+.+.+++.++..++.....+|++.|.+... ........|+++|++++++..++.+++.+++.+.+.+
T Consensus 909 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~-----~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~ 983 (1622)
T PLN03130 909 NALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGT-----PKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLY 983 (1622)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 1222222222222333333333344444332111 1112234678889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001980 494 LTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILG 573 (987)
Q Consensus 494 ~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~ 573 (987)
++.++|.+++++++++|++|||+ +++|+++|||++|++.+|..++..+..++..++.+++.++++++++|... ++
T Consensus 984 ~~~~L~~~l~~~ll~~p~~ffd~--~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~---~~ 1058 (1622)
T PLN03130 984 AAKRLHDAMLGSILRAPMSFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISL---WA 1058 (1622)
T ss_pred HHHHHHHHHHHHHHcCCHHHhcc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 99999999999999999999985 79999999999999999999999999999999999988888877776332 33
Q ss_pred HHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001980 574 TYPLLVLANFAQQLS---LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGI 650 (987)
Q Consensus 574 ~~pl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (987)
++|+.++++..+.++ .+...+......++..+++.|+++|++|||+|+++++|.+.+.+..+...+..+.......+
T Consensus 1059 ~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w 1138 (1622)
T PLN03130 1059 IMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRW 1138 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333333 23333333344578899999999999999999999999988888877766554433322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001980 651 LFGISQFALHASEALILWYGVHLVGKGV-ST-----FSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDR 724 (987)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~ 724 (987)
+.....++. .+++.+.+...+..+. .. .+.+..++.+.......+..+......++..+.+++|+.++++.
T Consensus 1139 l~~~l~~~~---~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~ 1215 (1622)
T PLN03130 1139 LAIRLETLG---GLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDL 1215 (1622)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 222222211 1122222333333321 11 22333333444455566666777777888999999999999987
Q ss_pred cCCCCCCC--CCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc
Q 001980 725 STRIDPDD--PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802 (987)
Q Consensus 725 ~~~~~~~~--~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G 802 (987)
+++.+... ..+.+.+|.+|.|+|+||+|+|+++ .++||+|+||+|+||||||||||||||||||+++|+|+|+|++|
T Consensus 1216 ~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G 1294 (1622)
T PLN03130 1216 PSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1294 (1622)
T ss_pred CCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence 65542211 1112234667999999999999643 24699999999999999999999999999999999999999999
Q ss_pred eEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCC
Q 001980 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGV 882 (987)
Q Consensus 803 ~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~ 882 (987)
+|+|||+||+++++++||++|++|||||+||+|||||||+++. +++|+|+|+||++++++++|.++|+||||+|||+|.
T Consensus 1295 ~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~ 1373 (1622)
T PLN03130 1295 RILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGE 1373 (1622)
T ss_pred eEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCC
Confidence 9999999999999999999999999999999999999999875 689999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEe
Q 001980 883 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962 (987)
Q Consensus 883 ~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~ 962 (987)
+|||||||||||||||+|+|+|||||||||+||.+||+.||++|++.+++||+|+||||++|+++||||+||++|+|+|+
T Consensus 1374 nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~ 1453 (1622)
T PLN03130 1374 NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEF 1453 (1622)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHHhhh
Q 001980 963 GSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 963 Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
|+|+||+++++|.|++|++.+.
T Consensus 1454 Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1454 DTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred CCHHHHHhCCCCHHHHHHHHcC
Confidence 9999999987899999997764
No 5
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3e-146 Score=1424.27 Aligned_cols=922 Identities=22% Similarity=0.298 Sum_probs=710.9
Q ss_pred HHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCc
Q 001980 19 ALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNG 98 (987)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (987)
+.++++|++++.+|.+|++.+|+++.++..+..|+..++..+..+.++++|++||.++++.+++..... ........
T Consensus 537 ~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~---~~~~~~~~ 613 (1495)
T PLN03232 537 VTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN---PPLQPGAP 613 (1495)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc---CCcCCCCC
Confidence 335688999999999999999999988888889999999999999999999999999998654321111 01111224
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++|+|+.+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+. .+|++|
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~I 681 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSV 681 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcE
Confidence 69999999999854445799999999999999999999999999999999999999998763 235689
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
+||+|+||+|++||||||+||.+ .++++++++++.|++.++++.+|+|++|.+||+|.+|||||||||+||||+|++|+
T Consensus 682 ayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 760 (1495)
T PLN03232 682 AYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1495)
T ss_pred EEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999986 57889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHH-HHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHHH
Q 001980 259 ILLLDEATSALDAGSESIVQE-ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 337 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 337 (987)
||||||||||||+++++++.+ ++....+++|+|+|||+++.++.||+|++|++|+|+++|+|++++++++.|.++...+
T Consensus 761 IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~ 840 (1495)
T PLN03232 761 IYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENA 840 (1495)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhc
Confidence 999999999999999887755 5666667999999999999999999999999999999999999999888888877554
Q ss_pred HhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchHHHHHHHHhCC
Q 001980 338 EMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAP 417 (987)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (987)
....+.....+.. . .... ..... ........... ....+...... .+++++..+...+..|.+|.+.
T Consensus 841 ~~~~~~~~~~~~~--~---~~~~-~~~~~--~~~~~~~~~~~--~~~~~~~~~~~---~~~e~~~~g~v~~~vy~~y~~~ 907 (1495)
T PLN03232 841 GKMDATQEVNTND--E---NILK-LGPTV--TIDVSERNLGS--TKQGKRGRSVL---VKQEERETGIISWNVLMRYNKA 907 (1495)
T ss_pred ccccccccccccc--c---cccc-ccccc--ccccccccccc--ccccccchhhh---hhHHHHhcCcccHHHHHHHHHH
Confidence 3211110000000 0 0000 00000 00000000000 00000000000 0111222344445555555443
Q ss_pred ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 418 EW--PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLT 495 (987)
Q Consensus 418 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (987)
.. +.+.+.+++.++..+......+|++.|. ...........+|+++|++++++..++.+++.+++.+.+.+++
T Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~-----~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~ 982 (1495)
T PLN03232 908 VGGLWVVMILLVCYLTTEVLRVSSSTWLSIWT-----DQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAA 982 (1495)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222222222222222222223333222 1111001224578899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 496 TRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 575 (987)
Q Consensus 496 ~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~ 575 (987)
.++|++++++++++|++|||+ +++|+++||+++|++.+|..++..+..++..++.++++++++++.++.. +++++
T Consensus 983 ~~lr~~l~~~ll~~p~~ff~~--~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~---~~~~~ 1057 (1495)
T PLN03232 983 KRLHDAMLNSILRAPMLFFHT--NPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTIS---LWAIM 1057 (1495)
T ss_pred HHHHHHHHHHHHcCCeeeeCc--CCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 999999999999999999985 7999999999999999999999999999998888888887777766533 22334
Q ss_pred HHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001980 576 PLLVLANFAQQLS---LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILF 652 (987)
Q Consensus 576 pl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (987)
|+.++++..+..+ .+...+......++..+++.|+++|++|||+|+.+++|.+++.+..+...+..+.......+..
T Consensus 1058 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 1137 (1495)
T PLN03232 1058 PLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLT 1137 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333322 2333444445567889999999999999999999999999888887777665543333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-ccCC----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 653 GISQFALHASEALILWYGVHLVG-KGVS----T-FSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 653 ~~~~~~~~~~~~~~~~~g~~lv~-~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
..... +..++..+.+...+. .+.+ . .+.+..++.+......++..+...+.+++..+.+++|+.++++.++
T Consensus 1138 ~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~ 1214 (1495)
T PLN03232 1138 IRLET---LGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPS 1214 (1495)
T ss_pred HHHHH---HHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 11111 112222222333333 2322 1 1222223344444556777888888899999999999999998765
Q ss_pred CCCCCCC--CCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceE
Q 001980 727 RIDPDDP--DAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804 (987)
Q Consensus 727 ~~~~~~~--~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I 804 (987)
+.+...+ ...+.+|.+|.|+|+||+|+|+++ .++||+|+||+|+||||||||||||||||||+++|+|+|+|++|+|
T Consensus 1215 e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1293 (1495)
T PLN03232 1215 EATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI 1293 (1495)
T ss_pred cccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceE
Confidence 5332111 112224667899999999999643 2469999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 805 ~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
+|||+||+++++++||++|++|||||+||+|||||||+++. +++|+|+|+|++.++++++|.++|+||||+|||+|.+|
T Consensus 1294 ~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~L 1372 (1495)
T PLN03232 1294 MIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENF 1372 (1495)
T ss_pred EECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCC
Confidence 99999999999999999999999999999999999999875 69999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecC
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt 964 (987)
||||||||||||||+|+|+|||||||||+||++||+.||++|++.+++||+|+||||++|+++||||+||++|+|+|+|+
T Consensus 1373 SgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt 1452 (1495)
T PLN03232 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDS 1452 (1495)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHhhh
Q 001980 965 HSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 965 ~~eLl~~~~g~f~~l~~~q~ 984 (987)
|+||+++++|.|++|++.+.
T Consensus 1453 ~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1453 PQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred HHHHHhCCCCHHHHHHHHhC
Confidence 99999987789999998764
No 6
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.4e-142 Score=1389.48 Aligned_cols=935 Identities=22% Similarity=0.270 Sum_probs=725.8
Q ss_pred HHHHHHHH--cCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCccE
Q 001980 23 WYAGVFIR--NGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNI 100 (987)
Q Consensus 23 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i 100 (987)
.++.+.+. ++.++++.+|+++.++..+..|+..++..+..+.+++.|++||.++++.+++...........+.....+
T Consensus 558 ~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i 637 (1522)
T TIGR00957 558 TFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSI 637 (1522)
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcE
Confidence 45566665 3678999999988777777889999999999999999999999999976543211000000001112369
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 001980 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 180 (987)
+++|++|+|++. +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|
T Consensus 638 ~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~y 703 (1522)
T TIGR00957 638 TVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAY 703 (1522)
T ss_pred EEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEE
Confidence 999999999743 34689999999999999999999999999999999999999999999997 6999
Q ss_pred EcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001980 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKIL 260 (987)
Q Consensus 181 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~il 260 (987)
|+|+||+|++||+|||.||.+ .+.+++.++++.|++.+++..+|+|++|.+|++|.+|||||||||+||||+|++|+|+
T Consensus 704 v~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il 782 (1522)
T TIGR00957 704 VPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 782 (1522)
T ss_pred EcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999976 3456778888888889999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHh---hhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHHH
Q 001980 261 LLDEATSALDAGSESIVQEALDR---LMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 337 (987)
Q Consensus 261 llDEpts~LD~~~~~~i~~~l~~---~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 337 (987)
|||||||+||+++++.+.+.+.+ +.+++|+|+|||+++.+..||+|++|++|+++++|+++++.++.+.|.++...+
T Consensus 783 lLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 862 (1522)
T TIGR00957 783 LFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTY 862 (1522)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhh
Confidence 99999999999999999998854 456899999999999999999999999999999999999998888887776543
Q ss_pred HhhhccccCCCC-cc---cccccc--cccccc-----cccccc---cccccccc-c-c--cc-cCCCCcccccccccccc
Q 001980 338 EMVRNRDFANPS-TR---RSRSTR--LSHSLS-----TKSLSL---RSGSLRNL-S-Y--SY-STGADGRIEMVSNAETD 398 (987)
Q Consensus 338 ~~~~~~~~~~~~-~~---~~~~~~--~~~~~~-----~~~~~~---~~~~~~~~-~-~--~~-~~~~~~~~~~~~~~~~~ 398 (987)
............ .. ...... .++... ...... ........ . . +. ................+
T Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1522)
T TIGR00957 863 APDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEA 942 (1522)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHH
Confidence 221111000000 00 000000 000000 000000 00000000 0 0 00 00000000000000011
Q ss_pred cCCCCCchHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHH
Q 001980 399 RKNPAPDGYFLRLLKLNAP-EWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAV 477 (987)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (987)
+.+..+...+..|.+|.+. ++...++.+++.++..++.....+|++.|.+.... ........+|+.+|++++++..
T Consensus 943 e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~---~~~~~~~~~~~~iy~~l~i~~~ 1019 (1522)
T TIGR00957 943 DKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMV---NGTQNNTSLRLSVYGALGILQG 1019 (1522)
T ss_pred HHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cCCCCCcchHHHHHHHHHHHHH
Confidence 1222333344444444332 23332232333333333333444455444321100 0011123456778888999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 478 VAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSF 557 (987)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~ 557 (987)
++.++..+++.+.+.+++.++|++++++++++|++|||. +++|+++|||++|++.+|..++..+..++..++.+++.+
T Consensus 1020 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~l 1097 (1522)
T TIGR00957 1020 FAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER--TPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGAL 1097 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999999999985 799999999999999999999999999999999999998
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHH
Q 001980 558 IVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVP 637 (987)
Q Consensus 558 ~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~ 637 (987)
+++++.+|.+++++++++++++++..++.+..+...+......++..+++.|+++|+++||+|+++++|.+++.+..+..
T Consensus 1098 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~ 1177 (1522)
T TIGR00957 1098 IVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDEN 1177 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHH
Confidence 88888887655544444333333333333333333444445567889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 638 QSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVG-KGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVG 716 (987)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 716 (987)
++..+.......++.....++.. +++++++...+. .+.++.|.+..++.+......++..+...+.++...+.+++
T Consensus 1178 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~e 1254 (1522)
T TIGR00957 1178 QKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVE 1254 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776655555554444333322 233334444443 57899999998888988889999999999999999999999
Q ss_pred HHHHHhcccCCCCC--CCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 001980 717 SVFSTLDRSTRIDP--DDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 717 ri~~~~~~~~~~~~--~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~ 794 (987)
|+.++++.+++.+. +.....+.+|.+|.|+|+||+|+|+++. .+||+||||+|+||||||||||||||||||+++|+
T Consensus 1255 Ri~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~ 1333 (1522)
T TIGR00957 1255 RLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLF 1333 (1522)
T ss_pred HHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 99999977654321 1111122346779999999999997542 36999999999999999999999999999999999
Q ss_pred ccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCC
Q 001980 795 RFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYK 874 (987)
Q Consensus 795 rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gld 874 (987)
|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||++. ++++|+|+|+|++.++++++|.++|+|||
T Consensus 1334 rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~-~~~sdeei~~al~~a~l~~~I~~lp~GLd 1412 (1522)
T TIGR00957 1334 RINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF-SQYSDEEVWWALELAHLKTFVSALPDKLD 1412 (1522)
T ss_pred cCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-cCCCHHHHHHHHHHcCcHHHHhhCccCCC
Confidence 99999999999999999999999999999999999999999999999854 47999999999999999999999999999
Q ss_pred CccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEE
Q 001980 875 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVV 954 (987)
Q Consensus 875 t~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl 954 (987)
|+|||+|.+|||||||||||||||+|+|+|||||||||+||.+||+.||++|++.+++||||+||||++|+.+||||+||
T Consensus 1413 t~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVl 1492 (1522)
T TIGR00957 1413 HECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVL 1492 (1522)
T ss_pred ceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEecChhHHhcCCCchHHHHHHhh
Q 001980 955 QDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983 (987)
Q Consensus 955 ~~G~ive~Gt~~eLl~~~~g~f~~l~~~q 983 (987)
|+|+|+|+|+|+||+++ +|.|++|++..
T Consensus 1493 d~G~IvE~G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1493 DKGEVAEFGAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred ECCEEEEECCHHHHHhC-CCHHHHHHHHc
Confidence 99999999999999998 79999999864
No 7
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.3e-136 Score=1330.80 Aligned_cols=930 Identities=20% Similarity=0.260 Sum_probs=706.0
Q ss_pred HHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---C--C--------C
Q 001980 22 FWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ---D--P--------T 88 (987)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~--~--------~ 88 (987)
+.++++.+.++.+|++.+|+++.++..+..|+..++..+..+.++.+|++||.+||+.++.... + . .
T Consensus 486 ~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~ 565 (1560)
T PTZ00243 486 VVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHS 565 (1560)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhcccccccc
Confidence 3567888899999999999999988888899999999999999999999999999976431000 0 0 0
Q ss_pred C--C---------------Cc---------------------------CCCCCccEEEEeEEEECCCC------------
Q 001980 89 N--G---------------RC---------------------------LDEVNGNIEFKNVTFSYPSR------------ 112 (987)
Q Consensus 89 ~--~---------------~~---------------------------~~~~~~~i~~~~~~~~y~~~------------ 112 (987)
. . .. .......+.++|+++.++..
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1560)
T PTZ00243 566 TACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGG 645 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccccccc
Confidence 0 0 00 00011246677777765310
Q ss_pred -------------------------CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 001980 113 -------------------------PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK 167 (987)
Q Consensus 113 -------------------------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 167 (987)
.+.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----- 720 (1560)
T PTZ00243 646 GHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----- 720 (1560)
T ss_pred cccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-----
Confidence 12358999999999999999999999999999999999999999999875
Q ss_pred CCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 168 TLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 168 ~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
++|+||+|+||+|++||+|||.++.+. +.+++.++++.+++.++++.+|+|++|.+|++|.+|||||||||
T Consensus 721 --------~~i~yv~Q~~~l~~~Tv~enI~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRv 791 (1560)
T PTZ00243 721 --------RSIAYVPQQAWIMNATVRGNILFFDEE-DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARV 791 (1560)
T ss_pred --------CeEEEEeCCCccCCCcHHHHHHcCChh-hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHH
Confidence 379999999999999999999998653 44567788888899999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHH-HHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQE-ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+||||||++|++||||||||+||+++++.+.+ ++....+|+|+|+|||+++.+..||+|++|++|+++++|+++++++.
T Consensus 792 aLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 792 SLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999999998777765 44444568999999999999999999999999999999999999875
Q ss_pred hhhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCch
Q 001980 327 AGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDG 406 (987)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (987)
+.|..+........+........+.................... .............+...... ...+++..+..
T Consensus 872 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l---~~~e~~~~g~v 946 (1560)
T PTZ00243 872 -SLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAK-QEGNAEGGDGAALDAAAGRL---MTREEKASGSV 946 (1560)
T ss_pred -hHHHHHHHhhcccccccccccccccccccccccccccccccccc-cccccccccccccccccchh---hhHHHHhcCcc
Confidence 34555543221111000000000000000000000000000000 00000000000000000000 01111222333
Q ss_pred HHHHHHHHhCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001980 407 YFLRLLKLNAPE--WPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQH 484 (987)
Q Consensus 407 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (987)
.|..|..|.+.. +.+.+..++..++..++.....+|++.|.. .. .......|+.+|+++.++..++.+++.
T Consensus 947 ~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~-----~~--~~~~~~~~l~~y~~~~~~~~~~~~l~~ 1019 (1560)
T PTZ00243 947 PWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWST-----RS--FKLSAATYLYVYLGIVLLGTFSVPLRF 1019 (1560)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cc--cCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 444444443321 111111111112222222223333333221 11 112234577788888777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001980 485 YFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVE 564 (987)
Q Consensus 485 ~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (987)
+.....+.+.+.++|+++|++++++|+.|||. ++.|+++|||++|++.+|..++..+..++..++.++++++++++.+
T Consensus 1020 ~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~--~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~ 1097 (1560)
T PTZ00243 1020 FLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT--TPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQ 1097 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhccC--CCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888889999999999999999999995 7999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHH
Q 001980 565 WRVSLLILGTYPLLVLANFAQQ---LSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQT 641 (987)
Q Consensus 565 ~~l~l~~l~~~pl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~ 641 (987)
|.+. ++++|+.+++.++.. +..+...+......++..+++.|+++|+++||+|++++.+.++|.+..+...+..
T Consensus 1098 p~~~---~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~ 1174 (1560)
T PTZ00243 1098 PFVL---VALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCS 1174 (1560)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 7433 333444433333333 3333333444455678899999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 642 LRRSLTAGILFGISQFALHASEALILWYGVHLV--GKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVF 719 (987)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~ 719 (987)
+.......+......++..+..+++.+++.... ..+.++++.+..++.+......++..+...+.+++..+.+++|+.
T Consensus 1175 ~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~ 1254 (1560)
T PTZ00243 1175 YLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLL 1254 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666666655555555444444444444333 344567887777777777888899999999999999999999999
Q ss_pred HHhcccCCCC-CC------------------------CCC-C---CCCCCccccEEEEeEEEECCCCCCccceeeeeEEE
Q 001980 720 STLDRSTRID-PD------------------------DPD-A---EPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRI 770 (987)
Q Consensus 720 ~~~~~~~~~~-~~------------------------~~~-~---~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I 770 (987)
++++..++++ +. ++. . .+.++..|.|+|+||+|+|+++ .++||+||||+|
T Consensus 1255 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I 1333 (1560)
T PTZ00243 1255 YYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRI 1333 (1560)
T ss_pred HHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEE
Confidence 9986433211 00 000 0 1122356899999999999754 346999999999
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCH
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATE 850 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd 850 (987)
+||||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||+++ .+++|
T Consensus 1334 ~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~-~~~sd 1412 (1560)
T PTZ00243 1334 APREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF-LEASS 1412 (1560)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcc-cCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875 57999
Q ss_pred HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001980 851 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN-PAILLLDEATSALDAESECVLQEALERL 929 (987)
Q Consensus 851 ~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~-p~ILlLDEaTS~LD~~te~~I~~~l~~~ 929 (987)
+|+|+|+++++++++|.++|+||||+|||+|.||||||||||||||||+++ |+|||||||||+||++||+.|+++|++.
T Consensus 1413 eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~ 1492 (1560)
T PTZ00243 1413 AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSA 1492 (1560)
T ss_pred HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999996 8999999999999999999999999999
Q ss_pred cCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhh
Q 001980 930 MRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 930 ~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
+++||||+||||++|+.+||+|+||++|+|+|+|+|+||+++++|.|++|++.+.
T Consensus 1493 ~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1493 FSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred CCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999877899999998764
No 8
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.5e-134 Score=1309.89 Aligned_cols=935 Identities=19% Similarity=0.269 Sum_probs=696.4
Q ss_pred HHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCC
Q 001980 17 SWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLG-QSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDE 95 (987)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~ 95 (987)
.++.++++++|.+.++ ++++.+|+++.++..+..|+. .++..+..+.++.+|++||.+||..++.. .... ..
T Consensus 316 ~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~-~~~~-----~~ 388 (1490)
T TIGR01271 316 FFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYK-TLEY-----NL 388 (1490)
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cccc-----cC
Confidence 3445566777777654 688999998877777767764 68999999999999999999999765421 1110 01
Q ss_pred CCccEEEEeEEEECCCCC-------------------------------CccceeeeeEEEeCCcEEEEEcCCCccHHHH
Q 001980 96 VNGNIEFKNVTFSYPSRP-------------------------------DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTV 144 (987)
Q Consensus 96 ~~~~i~~~~~~~~y~~~~-------------------------------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTL 144 (987)
....++++|++|.|+... ..++|+|+||+|++|++++|+||||||||||
T Consensus 389 ~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTL 468 (1490)
T TIGR01271 389 TTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSL 468 (1490)
T ss_pred CCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHH
Confidence 123589999999995310 1358999999999999999999999999999
Q ss_pred HHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhC
Q 001980 145 VSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLL 224 (987)
Q Consensus 145 l~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (987)
+++|+|+++|++|+|.++| +|+||+|+||+|++||+|||+||.+ .+.+++.++++.|++.+++..+
T Consensus 469 l~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l 534 (1490)
T TIGR01271 469 LMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALF 534 (1490)
T ss_pred HHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhc
Confidence 9999999999999999998 6999999999999999999999965 3445677777888889999999
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHH-HHHhhhCCCeEEEEcCCCCccccC
Q 001980 225 PNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE-ALDRLMVGRTTVVVAHRLSTIRNV 303 (987)
Q Consensus 225 ~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~vtH~~~~~~~~ 303 (987)
|.|++|.+|++|.+|||||||||+||||+|++|+++|||||||+||+++++.+++ ++.++.+++|+|+|||+++.+..|
T Consensus 535 ~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~a 614 (1490)
T TIGR01271 535 PEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKA 614 (1490)
T ss_pred cccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999987 567777799999999999999999
Q ss_pred CEEEEEeCCEEEEecChHHHHHhhhhHHHHHHHHHhhh----cc--------------c--c-----C-C------CCcc
Q 001980 304 DTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVR----NR--------------D--F-----A-N------PSTR 351 (987)
Q Consensus 304 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~----~~--------------~--~-----~-~------~~~~ 351 (987)
|+|++|++|++++.|+++++.+..+.|........... +. . . . . .+.+
T Consensus 615 d~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1490)
T TIGR01271 615 DKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPP 694 (1490)
T ss_pred CEEEEEECCEEEEEcCHHHHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999877666655542110000 00 0 0 0 0 0000
Q ss_pred cccccc----------------------------c-cccccccc--------------cccccccc---------ccc--
Q 001980 352 RSRSTR----------------------------L-SHSLSTKS--------------LSLRSGSL---------RNL-- 377 (987)
Q Consensus 352 ~~~~~~----------------------------~-~~~~~~~~--------------~~~~~~~~---------~~~-- 377 (987)
...... . ........ .+...... ...
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1490)
T TIGR01271 695 EFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQS 774 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccc
Confidence 000000 0 00000000 00000000 000
Q ss_pred -----cccccCC--------C--------Cc----ccc-----c-ccc-----------c------ccccCCCCCchHHH
Q 001980 378 -----SYSYSTG--------A--------DG----RIE-----M-VSN-----------A------ETDRKNPAPDGYFL 409 (987)
Q Consensus 378 -----~~~~~~~--------~--------~~----~~~-----~-~~~-----------~------~~~~~~~~~~~~~~ 409 (987)
....... . +. ... . ..+ . ..++++..+...|.
T Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~ 854 (1490)
T TIGR01271 775 VLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWN 854 (1490)
T ss_pred hhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHH
Confidence 0000000 0 00 000 0 000 0 00111223344555
Q ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h-hcC-cch-h---------hhhhHHH-HHHHHHH
Q 001980 410 RLLKLNAP--EWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVF--Y-YRN-PAS-M---------ERKTKEF-VFIYIGA 472 (987)
Q Consensus 410 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~-~~~-~---------~~~~~~~-~~~~~~~ 472 (987)
.|++|.+. .+..+++.+++.++..++.....+|+..|+... + ... ... . .....+| +.+|+++
T Consensus 855 vY~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1490)
T TIGR01271 855 TYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGT 934 (1490)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHH
Confidence 55555432 222222223333333333444444444332100 0 000 000 0 0011223 4555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001980 473 GLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTS 552 (987)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~ 552 (987)
++...++.+++.+++...+.+++.++|.+++++++++|++||++ ++.|+++|||++|++.+|..++..+..++..++.
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~ 1012 (1490)
T TIGR01271 935 ADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT--MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLI 1012 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65666777888889999999999999999999999999999986 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHH
Q 001980 553 LLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSL---KGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSL 629 (987)
Q Consensus 553 ~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~ 629 (987)
+++.++++++++|.+++ +++|++++++++..++. +...+......++..+++.|+++|+.|||+|++++++.++
T Consensus 1013 ~i~~l~~i~~~~p~l~l---~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~ 1089 (1490)
T TIGR01271 1013 VLGAIFVVSVLQPYIFI---AAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETL 1089 (1490)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHH
Confidence 99999888888886544 34444444333333333 3333444445678899999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 630 FCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEII 709 (987)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (987)
+.+..+...+..+.......|+.....++..+...+..+++ +....++.+.+..++.+......++..++..+.++.
T Consensus 1090 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~---~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le 1166 (1490)
T TIGR01271 1090 FHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIA---IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVD 1166 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999877665554444333333332222221111111111 111223444555555555566677778888888999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCC----------------CCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCC
Q 001980 710 RGGESVGSVFSTLDRSTRIDPDDP----------------DAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAG 773 (987)
Q Consensus 710 ~~~~s~~ri~~~~~~~~~~~~~~~----------------~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~G 773 (987)
..+.+++|+.++++.+++.....+ ..++.||..|.|+|+||+|+|++. .++||+|+||+|+||
T Consensus 1167 ~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~G 1245 (1490)
T TIGR01271 1167 GLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGG 1245 (1490)
T ss_pred HHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCC
Confidence 999999999999976654321100 011235677999999999999753 457999999999999
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHH
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEV 853 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei 853 (987)
||||||||||||||||+++|+|+++ ++|+|+|||+||++++++++|++|++|||||+||+||||+||++. .+++|+++
T Consensus 1246 ekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~-~~~tdeei 1323 (1490)
T TIGR01271 1246 QRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-EQWSDEEI 1323 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc-cCCCHHHH
Confidence 9999999999999999999999998 799999999999999999999999999999999999999999865 46899999
Q ss_pred HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCC
Q 001980 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR 933 (987)
Q Consensus 854 ~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~ 933 (987)
|+||+.+++++++.++|+||||+|+|+|.+|||||||||||||||||+|+|||||||||+||.+||+.|++.|++.+++|
T Consensus 1324 ~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~ 1403 (1490)
T TIGR01271 1324 WKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNC 1403 (1490)
T ss_pred HHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhh
Q 001980 934 TTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 934 TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
|||+||||++++.+||||+||++|+|+|+|+|++|+++ +|.|++|++.+.
T Consensus 1404 TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1404 TVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAAD 1453 (1490)
T ss_pred EEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhC
Confidence 99999999999999999999999999999999999975 899999998764
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-110 Score=951.03 Aligned_cols=574 Identities=38% Similarity=0.610 Sum_probs=543.8
Q ss_pred hHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 406 GYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHY 485 (987)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (987)
..+++++.+.++.|+++..+.++.++........+.+.+.+++.++...+ ..........+..++.+.+.++.+++.+
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~--~~~~~~~~~~~l~~l~~~~a~~~~~r~~ 210 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD--SADALKRACTILLGLFLIGALANAIRGG 210 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999888888899999999988776111 1233344566677777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001980 486 FFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEW 565 (987)
Q Consensus 486 ~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (987)
++.+.+.+...++|.++|++++++.++|||. +..|++++|++.|+..+.+.++..+...+.+++..++++++|++.+|
T Consensus 211 ~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~--nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~ 288 (716)
T KOG0058|consen 211 LLQYAGERVVARLRTDLFRSLLRQDIAFFDE--NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW 288 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 9999999999999999999999999999996 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHH
Q 001980 566 RVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRS 645 (987)
Q Consensus 566 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (987)
.++++.++.+|++++...++.++.++.+++.+...+.......|.+.+++|||+|+.|+...++|.+.++...+...+..
T Consensus 289 ~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a 368 (716)
T KOG0058|consen 289 RLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEA 368 (716)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001980 646 LTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRS 725 (987)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~ 725 (987)
...+++++...+..++....++|+|..++..|.++.|++..++++......++..+...+.++.++..+.+|+++++|++
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~ 448 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK 448 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEE
Q 001980 726 TRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 805 (987)
Q Consensus 726 ~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~ 805 (987)
|..++. ....|. ..+|.|+|+||+|+||.+|+.+||||+||+|+|||+||+||||||||||++++|.|||+|++|+|+
T Consensus 449 P~i~~~-G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 449 PRIPLT-GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred CCCCCC-Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 877654 222332 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 001980 806 IDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 885 (987)
Q Consensus 806 idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 885 (987)
+||+||++++.++||++||+|.|||+||+|||+|||.||.+.++||||.+|+++|++++||.++|+||||.|||+|..||
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 001980 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 886 gGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~ 965 (987)
|||||||||||||+|||+||||||||||||+++|..||++|.+..+++|||+|||||+||+.+|+|+|+++|+|+|.|+|
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h 686 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTH 686 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHhhhc
Q 001980 966 SELVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 966 ~eLl~~~~g~f~~l~~~q~~ 985 (987)
+|||++++|.|++|+++|..
T Consensus 687 ~eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 687 DELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred HHHhhCcccHHHHHHHHhcc
Confidence 99999988999999999854
No 10
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5e-97 Score=885.46 Aligned_cols=577 Identities=42% Similarity=0.678 Sum_probs=539.3
Q ss_pred chHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001980 405 DGYFLRLLKLNA-PEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQ 483 (987)
Q Consensus 405 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (987)
..++..++++.. ..+..+.++.+++++.++..|++.++++.+.+.+..............+.+.|+.+++..++..+++
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q 91 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQ 91 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666644 3567778899999999999999999999988877654422222355668888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 484 HYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIV 563 (987)
Q Consensus 484 ~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 563 (987)
..++.+.++|...++|++.+++++|++++|||.. ..|.+..|++.|++.+++.++..+..+++.+.++++++++.|+.
T Consensus 92 ~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~--~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 92 VSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN--STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc--cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999974 44999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHH
Q 001980 564 EWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR 643 (987)
Q Consensus 564 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~ 643 (987)
.|+++++++++.|+++++.....+.+.+...+.+..+++..+...|++.+++||.+|+.|++..++|.+.++...+...+
T Consensus 170 ~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~ 249 (1228)
T KOG0055|consen 170 GWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIK 249 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001980 644 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLD 723 (987)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~ 723 (987)
...+.++..++..++.++.++..+|||..++..+..+.|.++.++..++.....+++.......+.++..++.++++.++
T Consensus 250 ~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~ 329 (1228)
T KOG0055|consen 250 KGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETID 329 (1228)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhc
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCce
Q 001980 724 RSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803 (987)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~ 803 (987)
..+..++...........+|+|+|+||+|+||.||+.++|+|+||+|++||.|||||+|||||||++++|.|||+|++|+
T Consensus 330 ~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~ 409 (1228)
T KOG0055|consen 330 RKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE 409 (1228)
T ss_pred CCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce
Confidence 88877665433334445789999999999999999989999999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 001980 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883 (987)
Q Consensus 804 I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 883 (987)
|+|||.|+++++.++||++||+|.|||+||++||+|||.+|+|+++++++.+|+|.+++++||.++|+||||.|||+|..
T Consensus 410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q 489 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ 489 (1228)
T ss_pred EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEec
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~G 963 (987)
|||||||||||||||+|+|+|||||||||+||+++|+.||++|++..+|+|+|+|||||+||+++|+|+||++|+|||.|
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G 569 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQG 569 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHhhh
Q 001980 964 SHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 964 t~~eLl~~~~g~f~~l~~~q~ 984 (987)
+|+||++++ |.|++|++.|.
T Consensus 570 ~h~ELi~~~-G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 570 THDELIALG-GIYSSLVRLQE 589 (1228)
T ss_pred CHHHHHhcc-chHHHHHHHHh
Confidence 999999985 99999999884
No 11
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=7.1e-95 Score=860.77 Aligned_cols=568 Identities=31% Similarity=0.500 Sum_probs=519.6
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
+.+++....+.+..+.-.++.+++.+++..+.+++...+++.+..... ..........++.++++..++.+++.+++
T Consensus 142 ~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~---~~tL~vl~ig~~~~~l~~~~l~~lr~~~~ 218 (709)
T COG2274 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS---RSTLTVLAIGLLLAALFEALLRLLRTYLI 218 (709)
T ss_pred hHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666666666677777777777777776654322 12223344555666777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
...+.+....+-.++|+|+++.|++||.+ ++.|++++|+ +|.+.|++++...+...+..++.+++.++++++++|.+
T Consensus 219 ~~~~~rld~~l~~~~~~hll~Lpl~~f~~--r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L 295 (709)
T COG2274 219 AHLGKRLDLELSGRFFRHLLRLPLSYFEK--RSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKL 295 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCcHHHccC--CChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999974 7999999998 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
+++.++.+|++++..++..+++++..++.....+...+.+.|++.|++|||+.+.|.++..+|++.+.++.+..++....
T Consensus 296 ~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~ 375 (709)
T COG2274 296 TLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKL 375 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR 727 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 727 (987)
..+...+..++..+..++++|+|+.+|..|.+|+|.++++.+....+..|+..+...+.++.+...+.+|+.++++.++|
T Consensus 376 ~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E 455 (709)
T COG2274 376 ALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPE 455 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 728 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 728 ~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
.+.+.. ....++..|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+|+|.|+|+|++|+|++|
T Consensus 456 ~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~d 533 (709)
T COG2274 456 QEGDKT-LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533 (709)
T ss_pred cccccc-cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 543321 22345678999999999999765 3479999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 808 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 808 G~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
|+|+++++++.||++|+|||||++||+|||||||+++.|++++||+++||+.+++++||.++|.||||+|||+|.+||||
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGG 613 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhH
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~e 967 (987)
|||||+|||||++||+||||||||||||++||+.|.+.|.+..++||+|+||||++++++||||+|||+|+|+|+|+|+|
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHhhh
Q 001980 968 LVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 968 Ll~~~~g~f~~l~~~q~ 984 (987)
|++. +|.|+++|+.|.
T Consensus 694 ll~~-~g~y~~l~~~q~ 709 (709)
T COG2274 694 LLAQ-GGLYARLYQQQE 709 (709)
T ss_pred HHHh-cChHHHHHhccC
Confidence 9998 999999998873
No 12
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=8.5e-89 Score=818.92 Aligned_cols=554 Identities=34% Similarity=0.559 Sum_probs=492.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 418 EWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTR 497 (987)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (987)
.+ .+.++.++.++...+....++++...++... ........+...++++.++..++.++..++..+.+.+...+
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 86 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-----ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVAD 86 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5566666666666666666777776666554 11122233444555555567777778888888888999999
Q ss_pred HHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001980 498 VRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPL 577 (987)
Q Consensus 498 l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl 577 (987)
+|.++++++++.|++||+. ++.|.+++|+++|++.++..+......+...++.+++.+++++..+|.+++++++.+|+
T Consensus 87 lr~~~~~~l~~~~~~~~~~--~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 164 (567)
T COG1132 87 LRRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPL 164 (567)
T ss_pred HHHHHHHHHHhCCHHHhCc--CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999986 67999999999999999999999966666678888899999999999999999999898
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001980 578 LVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQF 657 (987)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (987)
+.+......++.++..+..+...++....+.|+++|+++||+|+.++...+++.+..+...+...+..........+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (567)
T COG1132 165 LALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLL 244 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877776666677788888888999999999999999999999999999999999888888887878888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC
Q 001980 658 ALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEP 737 (987)
Q Consensus 658 ~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~ 737 (987)
+.....++.+++|..++..+.+++|.+..++.+......++..+......+.....+.+|++++++.+++....+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--- 321 (567)
T COG1132 245 LSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--- 321 (567)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999976543221111
Q ss_pred CCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH
Q 001980 738 VETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 817 (987)
Q Consensus 738 ~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~ 817 (987)
.....|+|+|+||+|+|++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+||++++++
T Consensus 322 ~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~ 399 (567)
T COG1132 322 LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD 399 (567)
T ss_pred CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHH
Confidence 2344578999999999974 34699999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 818 SLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
+||++|++|||||+||+|||+|||++|+++++|||+++|++.++++|||.++|+||||+|||+|.+||||||||||||||
T Consensus 400 ~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 400 SLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARA 479 (567)
T ss_pred HHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~ 977 (987)
++++|+|||||||||+||++||+.|++++++..+++|+|+||||++|+++||+|+|||+|+|+|+|+|+||+++ +|.|+
T Consensus 480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~ 558 (567)
T COG1132 480 LLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYA 558 (567)
T ss_pred HhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999998 99999
Q ss_pred HHHHhhhc
Q 001980 978 RLLQLQHH 985 (987)
Q Consensus 978 ~l~~~q~~ 985 (987)
+||+.|..
T Consensus 559 ~l~~~~~~ 566 (567)
T COG1132 559 RLYQAQGG 566 (567)
T ss_pred HHHHHhhc
Confidence 99998854
No 13
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.2e-87 Score=813.67 Aligned_cols=570 Identities=24% Similarity=0.302 Sum_probs=482.8
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
+++++++.++.++.++++++++++..++....++++..+++.....+.. ......+..+++++.++..++.+++.++.
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP--REALLPPFILLILLFVLRALLAWLRERVG 87 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888888888888888888888765422111 11122234445555666777888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
...+.+...++|.++|+++++.|..||+. +++|++++|+++|++.++..+...+..++..++.++++++++++++|.+
T Consensus 88 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 165 (588)
T PRK11174 88 FKAGQHIRQQIRQQVLDKLQQLGPAWIQG--KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAA 165 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhcc--CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999984 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
++++++.+|+.+++.....+..++..++.++..+.....+.|.++|+++||+|++|+.+.++|.+..+...+...+..+.
T Consensus 166 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 245 (588)
T PRK11174 166 GLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRM 245 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887777777777777777788888999999999999999999999999999999998888877776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKV---------IKVFVVLVVTANSVAETVSLAPEIIRGGESVGSV 718 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri 718 (987)
......+...+..+..+++.+++...+ .|.+++|.+ +..+.+......|+..+......+.++..+.+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri 324 (588)
T PRK11174 246 AFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESL 324 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555555555544444444444333 377776653 1111233345678888888888999999999999
Q ss_pred HHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 719 FSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
.++++.+++.++.. ....+.+..+.|+|+||+|.|++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|
T Consensus 325 ~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~- 400 (588)
T PRK11174 325 VTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL- 400 (588)
T ss_pred HHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-
Confidence 99998654321111 10111123457999999988854 346999999999999999999999999999999999999
Q ss_pred CCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccC
Q 001980 799 PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVG 878 (987)
Q Consensus 799 p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vg 878 (987)
|++|+|++||+|+++++.+++|++|+||||||+||+|||||||.+++|+++|+|+++|++.+++++++.++|+||||.||
T Consensus 401 p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vg 480 (588)
T PRK11174 401 PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIG 480 (588)
T ss_pred CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCE
Q 001980 879 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGR 958 (987)
Q Consensus 879 e~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ 958 (987)
|+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++.+||+|+||++|+
T Consensus 481 e~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 481 DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQ 560 (588)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred EEEecChhHHhcCCCchHHHHHHhhhccC
Q 001980 959 IVEQGSHSELVSRPDGAYSRLLQLQHHHI 987 (987)
Q Consensus 959 ive~Gt~~eLl~~~~g~f~~l~~~q~~~~ 987 (987)
|+|.|+|+||+++ +|.|+++++.|.+++
T Consensus 561 i~e~G~~~eL~~~-~~~y~~l~~~q~~~~ 588 (588)
T PRK11174 561 IVQQGDYAELSQA-GGLFATLLAHRQEEI 588 (588)
T ss_pred EeecCCHHHHHhc-chHHHHHHHHhhcCC
Confidence 9999999999987 789999999998765
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=7.4e-87 Score=817.55 Aligned_cols=564 Identities=32% Similarity=0.503 Sum_probs=499.7
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 407 YFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF 486 (987)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (987)
.+++++++.++.++.+...+++.++.++.....+++...+++....... .......+.+++++.++..++.+++.++
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG---PPALASAIFFMCLLSIASSVSAGLRGGS 224 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777778777777777788888888888888888876543221 1111223344445556677778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001980 487 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR 566 (987)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (987)
+.+.+.+...++|.++|++++++|+.||+. ++.|++++|+++|++.+++.+...+..++..++.+++++++++.++|.
T Consensus 225 ~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~ 302 (711)
T TIGR00958 225 FNYTMARINLRIREDLFRSLLRQDLGFFDE--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPR 302 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 567 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 646 (987)
Q Consensus 567 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (987)
+++++++.+|+.+++.....++.++..++.++..++....+.|+++|+++||+|+.|+++.++|.+..++..+...+...
T Consensus 303 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 382 (711)
T TIGR00958 303 LTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKAL 382 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888887777777887888888888899999999999999999999999999999999988888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 647 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
...........+..+..++++++|.+++..|.++.|.++++..+......++..+.....++.+...+.+|+.++++.++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 462 (711)
T TIGR00958 383 AYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKP 462 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 76666666667777777888899999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE
Q 001980 727 RIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806 (987)
Q Consensus 727 ~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i 806 (987)
+.++.. ...+.+..|.|+|+||+|+||++++.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 463 ~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 463 NIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred CCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 432211 111223467899999999998766668999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 807 DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 807 dG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
||+|+++++.+++|++|+||||||++|+|||||||.++.++++|+++++|++.++++++++++|+|+||.+||+|.+|||
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChh
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~ 966 (987)
|||||||||||++++|+|||||||||+||+++|+.|++ ....+++|+|+||||++++..||+|+||++|+|+|+|+|+
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~ 698 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK 698 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHH
Confidence 99999999999999999999999999999999999999 3345789999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHH
Q 001980 967 ELVSRPDGAYSRLL 980 (987)
Q Consensus 967 eLl~~~~g~f~~l~ 980 (987)
||+++ +|.|++|+
T Consensus 699 eL~~~-~~~y~~lv 711 (711)
T TIGR00958 699 QLMED-QGCYKHLV 711 (711)
T ss_pred HHHhC-CCchHhcC
Confidence 99987 78999874
No 15
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.2e-85 Score=808.28 Aligned_cols=562 Identities=25% Similarity=0.350 Sum_probs=495.7
Q ss_pred HHHHHHH-hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKL-NAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF 486 (987)
Q Consensus 408 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (987)
+++++++ .++.++.++..++++++..++....+++...+++....... ......+...++++.++..++.+++.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 199 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLA 199 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 34556666666667777777777777777777766542211 1112234445555666677888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001980 487 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR 566 (987)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (987)
....+.+...++|.++|+++++.|+.||+. .+.|++++|++ |++.+++.+...+...+..++.+++++++++.++|.
T Consensus 200 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (686)
T TIGR03797 200 VLRLETRMDASLQAAVWDRLLRLPVSFFRQ--YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWK 276 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHCC--CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999974 79999999997 899999999988888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 567 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 646 (987)
Q Consensus 567 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (987)
+++++++++|+.+++.++..+..++..++..+..++..+.+.|+++|+++||+|+.++++.++|.+..+...+...+...
T Consensus 277 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 356 (686)
T TIGR03797 277 LALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQR 356 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888877777777777888888888999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 647 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
...+...+...+..+..++++|+|.+++..|.++.|.++++..+......++..+......+.....+.+|+.++++.++
T Consensus 357 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 436 (686)
T TIGR03797 357 IENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALP 436 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999988654
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE
Q 001980 727 RIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806 (987)
Q Consensus 727 ~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i 806 (987)
+.+... ..+.+..|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 437 e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 512 (686)
T TIGR03797 437 EVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY 512 (686)
T ss_pred ccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 432111 1122345789999999999743 357999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 807 DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 807 dG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
||+|+++++.+++|++|+||||||++|+|||||||.++.+ ++|+++++|++.+++++++.++|+|+||++||+|.+|||
T Consensus 513 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG 591 (686)
T TIGR03797 513 DGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG 591 (686)
T ss_pred CCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 9999999999999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChh
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~ 966 (987)
||||||+|||||+++|+|||||||||+||++||+.|++.|++. ++|+|+||||++++..||+|+||++|+|+|.|+|+
T Consensus 592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~ 669 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYD 669 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999999986 68999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHhh
Q 001980 967 ELVSRPDGAYSRLLQLQ 983 (987)
Q Consensus 967 eLl~~~~g~f~~l~~~q 983 (987)
||+++ +|.|++|++.|
T Consensus 670 ~Ll~~-~~~y~~l~~~q 685 (686)
T TIGR03797 670 ELMAR-EGLFAQLARRQ 685 (686)
T ss_pred HHHhC-CcHHHHHHHhc
Confidence 99987 89999999876
No 16
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-85 Score=728.66 Aligned_cols=552 Identities=27% Similarity=0.377 Sum_probs=485.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 425 GAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLA 504 (987)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 504 (987)
..++.++.+++...+.++++..+...+.... ......+...++++.++..++.+.+.....+.+.++...+|+++++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~ 81 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLD 81 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777777778877777664432 1223345666667777888888999999999999999999999999
Q ss_pred HHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001980 505 AILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFA 584 (987)
Q Consensus 505 ~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~ 584 (987)
++.+.+..|-.. .++|++...++..++.++.++...++.++.+.+..+..++.+++++|..+++++++.|++.+++++
T Consensus 82 ~l~~~gp~~~~~--~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 82 KLAKLGPAFIAQ--KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHhCChhhhcC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999998875 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 585 QQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEA 664 (987)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (987)
.....+..+++.......+..++.+.++|+.|+|+||..+...++..+..++..+..++.-+..-....+..++.++..+
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888888899999999999999999999999999999999999988888887666666666666777777766
Q ss_pred HHHHHH-HHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccc
Q 001980 665 LILWYG-VHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRG 743 (987)
Q Consensus 665 ~~~~~g-~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g 743 (987)
++..+. ..++..|.++....+.++...-=++.|+-.+.+.+.....+..+.+.++.+.+.+.+..+........+..+.
T Consensus 240 lvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (559)
T COG4988 240 LVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319 (559)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence 665444 4444437888877777766666678899999999999999988999999998876554332221111122234
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
+|+++|++|+|++++ ++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.++||+++
T Consensus 320 ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 320 EISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred eeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 567779999998653 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC
Q 001980 824 GLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 903 (987)
Q Consensus 824 ~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ 903 (987)
++|||+|++|+|||||||.+++++.+|++++++++.+++.+|+.. |+|+||++||+|.+|||||+||++|||||+++++
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhh
Q 001980 904 ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983 (987)
Q Consensus 904 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q 983 (987)
++|||||||+||.+||+.|++.|.+.++++|||+||||+..+.++|+|+|||+||++|.|+|++|.++ +|.|++|+++|
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q 555 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQ 555 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 89999999988
Q ss_pred hc
Q 001980 984 HH 985 (987)
Q Consensus 984 ~~ 985 (987)
.+
T Consensus 556 ~~ 557 (559)
T COG4988 556 EG 557 (559)
T ss_pred hc
Confidence 53
No 17
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=6e-85 Score=804.78 Aligned_cols=564 Identities=23% Similarity=0.377 Sum_probs=496.1
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 407 YFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF 486 (987)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (987)
.+++++.+.++.++.++..++++++..++....++++..+++.+..... ......+...++++.++..++.+++.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (708)
T TIGR01193 143 SLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQIFL 219 (708)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666777777777777888887776543221 1112223334444555667788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001980 487 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR 566 (987)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (987)
..+.+.+...++|.++|+++++.|+.||+. .+.|++++|++ |.+.+.+.+...+...+..++.+++.++++++++|+
T Consensus 220 ~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~--~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (708)
T TIGR01193 220 LNVLGQRLSIDIILSYIKHLFELPMSFFST--RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNML 296 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999985 79999999998 999999999888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 567 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 646 (987)
Q Consensus 567 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (987)
+++++++++|+++++.++..++.++..++.....+...+.+.|+++|+++||+||.++++.++|.+..+...+...+...
T Consensus 297 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 376 (708)
T TIGR01193 297 LFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQK 376 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888889999999999999999999999999999999999888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 647 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
.......+..++..+..++++|+|.+++..|.+++|.++++..+......|+..+......+.....+.+|+.++++.++
T Consensus 377 ~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 456 (708)
T TIGR01193 377 ADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDS 456 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77777777777777888889999999999999999999999999999999999999999999999999999999988665
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE
Q 001980 727 RIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806 (987)
Q Consensus 727 ~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i 806 (987)
+.+... ...+.++..|.|+|+||+|+|++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 457 e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i 533 (708)
T TIGR01193 457 EFINKK-KRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 (708)
T ss_pred cccccc-cccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence 432211 11112344678999999999963 346999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcccEEEccccccccccHHHHhccC-CCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 001980 807 DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 885 (987)
Q Consensus 807 dG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~-~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 885 (987)
||+|+++++.+++|++|+||||||+||+|||||||.++ .++++|+++++|++.+++++++.++|+||||++||+|.+||
T Consensus 534 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LS 613 (708)
T TIGR01193 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613 (708)
T ss_pred CCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCC
Confidence 99999999999999999999999999999999999998 57899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 001980 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 886 gGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~ 965 (987)
|||||||+||||++++|+|||||||||+||++||+.|++.|++. +++|+|+||||++++..||+|+||++|+++|.|+|
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~ 692 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSH 692 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999985 78999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHH
Q 001980 966 SELVSRPDGAYSRLLQ 981 (987)
Q Consensus 966 ~eLl~~~~g~f~~l~~ 981 (987)
++|+++ +|.|++||+
T Consensus 693 ~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 693 DELLDR-NGFYASLIH 707 (708)
T ss_pred HHHHhc-CCcHHHHhh
Confidence 999987 799999985
No 18
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=9e-85 Score=804.22 Aligned_cols=564 Identities=24% Similarity=0.353 Sum_probs=494.8
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 407 YFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF 486 (987)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (987)
.+++++.+.++.++.+...++++++..++....+++...+++........ .....+...++++.++..++.+++.++
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (710)
T TIGR03796 141 LLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ---DWLRPLLLGMGLTALLQGVLTWLQLYY 217 (710)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666666666777777777655432211 111223444455556677888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001980 487 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR 566 (987)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (987)
....+.+...+++.++|+++++.|++||+. .+.|++++|++.| +.+.+.+...+...+..++.+++.+++++.++|.
T Consensus 218 ~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~--~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 294 (710)
T TIGR03796 218 LRRLQIKLAVGMSARFLWHILRLPVRFFAQ--RHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPV 294 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999975 7999999999988 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 567 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 646 (987)
Q Consensus 567 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (987)
+++++++.+|+.+++.++..+..++..++..+..++..+.+.|+++|+++||++++++.+.++|.+...+..+...+...
T Consensus 295 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 374 (710)
T TIGR03796 295 LTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGV 374 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888777777777777888888899999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 647 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
...+...+..++..+..++++|+|.+++..|.+++|.++++..+......++..+.....++.....+++|+.++++.++
T Consensus 375 ~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 454 (710)
T TIGR03796 375 LTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCC---C-CCCC-CCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC
Q 001980 727 RIDPDDP---D-AEPV-ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801 (987)
Q Consensus 727 ~~~~~~~---~-~~~~-~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~ 801 (987)
+.+...+ . .... ++..|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++
T Consensus 455 e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred ccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4322110 0 0111 2346789999999999753 3579999999999999999999999999999999999999999
Q ss_pred ceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCC
Q 001980 802 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERG 881 (987)
Q Consensus 802 G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G 881 (987)
|+|++||+|+++++.+++|++|+||||||++|+|||||||.++.++++|+++++|++.+++++++.++|+||||++||+|
T Consensus 534 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred cEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEE
Q 001980 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVE 961 (987)
Q Consensus 882 ~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive 961 (987)
.+|||||||||||||||+++|+|||||||||+||++||+.|.+.|++ .++|+|+||||++++..||+|+||++|+|+|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999987 5899999999999999999999999999999
Q ss_pred ecChhHHhcCCCchHHHHH
Q 001980 962 QGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 962 ~Gt~~eLl~~~~g~f~~l~ 980 (987)
.|+|+||+++ +|.|++|+
T Consensus 692 ~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 692 RGTHEELWAV-GGAYARLI 709 (710)
T ss_pred ecCHHHHHHc-CCcHHHHh
Confidence 9999999987 89999987
No 19
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.8e-84 Score=777.86 Aligned_cols=567 Identities=22% Similarity=0.310 Sum_probs=484.0
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPA-SMERKTKEFVFIYIGAGLYAVVAYLIQHYF 486 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (987)
+++++++.++.++.+++++++.++..++....++++..+++........ ............+++++++..++.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566667777777777777777777766777777766654321110 000001112233444556677788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001980 487 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR 566 (987)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (987)
....+.+...++|.++|++++++|+.||+. .++|++++|+++|++.++..+...+..++..++.++++++++++++|.
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLAR--YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLT 161 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHH
Q 001980 567 VSLLILGTYPLLVLA-NFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRS 645 (987)
Q Consensus 567 l~l~~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (987)
+++++++++|+++++ .++..+..+...++.++..+.....+.|.++|+++||+|+.++++.++|.+..++..+...+..
T Consensus 162 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (574)
T PRK11160 162 LALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQA 241 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888876543 3555566666677777788889999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001980 646 LTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVV-TANSVAETVSLAPEIIRGGESVGSVFSTLDR 724 (987)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~ 724 (987)
+...+...+..++..+..++++++|.+++ .|.++.|.+++++.+... ...++..+......+.+...+.+|+.++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~ 320 (574)
T PRK11160 242 NLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQ 320 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888888888888888889999884 788999988876665433 3456666677778888899999999999987
Q ss_pred cCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceE
Q 001980 725 STRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804 (987)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I 804 (987)
+++.+... .....+..+.|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|
T Consensus 321 ~~~~~~~~--~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I 397 (574)
T PRK11160 321 KPEVTFPT--TSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397 (574)
T ss_pred CCCCCCCc--ccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 65422111 11112345789999999999753 2469999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 805 ~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
++||+|+++++.+++|++|+||||||++|+|||+|||.++.++++|++++++++.+++++++.+ |+||||++||+|.+|
T Consensus 398 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~L 476 (574)
T PRK11160 398 LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQL 476 (574)
T ss_pred EECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCC
Confidence 9999999999999999999999999999999999999999989999999999999999999999 999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecC
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt 964 (987)
|||||||||||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+
T Consensus 477 SgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGT 556 (574)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHh
Q 001980 965 HSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 965 ~~eLl~~~~g~f~~l~~~ 982 (987)
|+||+++ +|.|++||+.
T Consensus 557 ~~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 557 HQELLAQ-QGRYYQLKQR 573 (574)
T ss_pred HHHHHhc-CcHHHHHHhh
Confidence 9999987 8999999863
No 20
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-87 Score=713.65 Aligned_cols=503 Identities=29% Similarity=0.421 Sum_probs=437.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 476 AVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLT 555 (987)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~ 555 (987)
+.++.-++.+++..+.+-....+-.++|+|+..+++.|+-. ...|+++.-+.+....+. ++...+.++.-.+..+.+
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~--rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~v 348 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLN--RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGV 348 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeec--ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhh
Confidence 35666678888888888999999999999999999999965 678888888888877776 555555555555555555
Q ss_pred HHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHH
Q 001980 556 SFIVA-FIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHEL 634 (987)
Q Consensus 556 ~~~~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~ 634 (987)
+++.. ..++|+.+++++.+..++........-...++.|++.....+....-.+++-+.+|+|.||++++..++|.+..
T Consensus 349 a~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAi 428 (790)
T KOG0056|consen 349 AMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAI 428 (790)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHH
Confidence 55543 34688888887776666554443333333344555555566667777899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 635 RVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGES 714 (987)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 714 (987)
.++++...+....-.++......+..+...+...+..++|..+..++|+++.+..+++....|+.....+...+++....
T Consensus 429 l~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiD 508 (790)
T KOG0056|consen 429 LKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFID 508 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhh
Confidence 99999887766666666666666666666666666667777888999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 001980 715 VGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 715 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~ 794 (987)
+|+++++++++++.. +.|...|....+|.|+|+||+|.|. |++|||+||||+++||+.+|+|||||+||||++++|+
T Consensus 509 mEnmfdllkee~eVv-d~P~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf 585 (790)
T KOG0056|consen 509 MENMFDLLKEEPEVV-DLPGAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF 585 (790)
T ss_pred HHHHHHHhhcCchhh-cCCCCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHH
Confidence 999999998776643 2333334445689999999999995 5678999999999999999999999999999999999
Q ss_pred ccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCC
Q 001980 795 RFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYK 874 (987)
Q Consensus 795 rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gld 874 (987)
||||.++|.|.|||+||+.+..++||++||+||||.+||+.||.+||.|++|.+++||+++|++.|++||-|.++|+||+
T Consensus 586 Rffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~ 665 (790)
T KOG0056|consen 586 RFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYN 665 (790)
T ss_pred HHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEE
Q 001980 875 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVV 954 (987)
Q Consensus 875 t~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl 954 (987)
|.|||+|-.||||||||+||||++|++|.|++||||||+||..||+.||.++.+...++|.|+|||||+|+.++|.|+|+
T Consensus 666 t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi 745 (790)
T KOG0056|consen 666 TRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVI 745 (790)
T ss_pred hhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEecChhHHhcCCCchHHHHHHhhh
Q 001980 955 QDGRIVEQGSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 955 ~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
++|+|+|.|+|+||+.+++|.|++||+.|+
T Consensus 746 ~~G~IvErG~HeeLl~rdgG~Ya~MWq~qq 775 (790)
T KOG0056|consen 746 SNGRIVERGRHEELLKRDGGAYADMWQAQQ 775 (790)
T ss_pred eCCeEeecCcHHHHHhccCCcHHHHHHHHH
Confidence 999999999999999999999999997764
No 21
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.8e-83 Score=775.31 Aligned_cols=567 Identities=30% Similarity=0.474 Sum_probs=489.7
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 409 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFS 488 (987)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (987)
++++.+.++.++.++..+++.++..+.....++++..+++....... ......+...++++.++..++.+++.++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 90 (582)
T PRK11176 14 RRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD---RSVLKWMPLVVIGLMILRGITSFISSYCIS 90 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555544455444445555556655554432111 111112233344456667777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001980 489 IMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVS 568 (987)
Q Consensus 489 ~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 568 (987)
+.+.+....+|.++++++++.|..+|+. .+.|++++|+++|++.+...+...+..++..++.++++++++++++|.++
T Consensus 91 ~~~~~~~~~lr~~~~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 168 (582)
T PRK11176 91 WVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 168 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999975 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001980 569 LLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA 648 (987)
Q Consensus 569 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (987)
+++++++|+.+++.+...+..++..++.++........+.|.++|+++||+|+.++.+.++|.+..+...+...+.....
T Consensus 169 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T PRK11176 169 LILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSAS 248 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888877777777777778888888889999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001980 649 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI 728 (987)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~ 728 (987)
.+...+...+..+..++++++|..++..|.+++|.++.++.+......++..+......+.....+.+|+.++++.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 328 (582)
T PRK11176 249 SISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEK 328 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 88788888888888888899999999999999999998888888888999999999999999999999999988765432
Q ss_pred CCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 729 DPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 729 ~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
+.. ....++..+.|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 329 ~~~---~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 404 (582)
T PRK11176 329 DEG---KRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 404 (582)
T ss_pred CCC---CcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECC
Confidence 211 11122334679999999999754 35799999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCC-CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 809 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG-ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 809 ~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~-~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
+|+++++.+++|++|+||||||++|+|||||||.++.++ ++|++++++++.++++++++++|+|+||++||+|.+||||
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 999999999999999999999999999999999998654 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhH
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~e 967 (987)
|||||+|||||+++|+|||||||||+||++||+.+.+.|.+..+++|+|+||||++++..||+|++|++|+|+|.|+|++
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHhhhc
Q 001980 968 LVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 968 Ll~~~~g~f~~l~~~q~~ 985 (987)
|+++ ++.|++|++.|.+
T Consensus 565 l~~~-~~~y~~l~~~~~~ 581 (582)
T PRK11176 565 LLAQ-NGVYAQLHKMQFG 581 (582)
T ss_pred HHhC-CChHHHHHHHHhc
Confidence 9987 7899999987754
No 22
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2e-83 Score=789.50 Aligned_cols=554 Identities=26% Similarity=0.402 Sum_probs=487.0
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 409 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFS 488 (987)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (987)
.+++.+.++.++.+...++++++..++....++++..+++........ .....+...++++.++..++.+++.++..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 136 HWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAF---ETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445566666666666666666777777777777665422111 11122333344445566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001980 489 IMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVS 568 (987)
Q Consensus 489 ~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 568 (987)
+.+.+...++|.++|+|+++.|+.| + ..+.|++++|+ +|++.+++.+...+...+..++.+++.++++++++|.++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 288 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLV 288 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999998 4 36899999999 799999999999888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001980 569 LLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA 648 (987)
Q Consensus 569 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (987)
+++++.+|+++++.++..++.++..++.....++..+.+.|+++|+++||+|+.++.+.++|.+..+...+...+.....
T Consensus 289 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (694)
T TIGR03375 289 WVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLS 368 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888788888888999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001980 649 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI 728 (987)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~ 728 (987)
.+...+...+..+..++++|+|.+++..|.+++|.++++..+......++..+.....++.....+.+|+.++++.+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 448 (694)
T TIGR03375 369 NLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVER 448 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 729 DPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 729 ~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
++.. .....++..|.|+|+||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 449 ~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 526 (694)
T TIGR03375 449 PEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526 (694)
T ss_pred CCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 2211 111122345789999999999753 34699999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 809 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 809 ~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
+|+++++++++|++|+||||||++|+|||||||.++.++++++++++|++.+++++++.++|+||||.+||+|.+|||||
T Consensus 527 ~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQ 606 (694)
T TIGR03375 527 VDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQ 606 (694)
T ss_pred EEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHH
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eL 968 (987)
||||+||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|+||
T Consensus 607 rQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eL 686 (694)
T TIGR03375 607 RQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQV 686 (694)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred hcC
Q 001980 969 VSR 971 (987)
Q Consensus 969 l~~ 971 (987)
+++
T Consensus 687 l~~ 689 (694)
T TIGR03375 687 LEA 689 (694)
T ss_pred HHH
Confidence 875
No 23
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.9e-83 Score=772.79 Aligned_cols=565 Identities=23% Similarity=0.346 Sum_probs=475.9
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
+++++.+.++.++.++..+++.++.+++....++++..+++......+... .....+.++++++.++..++.+++.++.
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (592)
T PRK10790 11 LKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQSLLF 89 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666777777777777777777777776543211110 1111122334444556667778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
...+.+...++|.++|+++++.|.+||+. .+.|++++|+++|++.++..+...+..++..++.+++.++++++++|.+
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (592)
T PRK10790 90 NRAAVGVVQQLRTDVMDAALRQPLSAFDT--QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRM 167 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
++++++++|+.++.........+...++..+...+...++.|.++|+++||+|+.++.+.+++.+..+...+...+....
T Consensus 168 ~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (592)
T PRK10790 168 ALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRL 247 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888777766666667667777777788889999999999999999999999999999888777766665554
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 648 AGIL-FGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 648 ~~~~-~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
..+. ..+..+...+...+..+++.. +..|.+++|.++++..+......++..+......+.+...+.+|+.++++.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 326 (592)
T PRK10790 248 DGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPR 326 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4432 222333332222222222233 57899999999999888888999999999999999999999999999987653
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE
Q 001980 727 RIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806 (987)
Q Consensus 727 ~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i 806 (987)
+... . ...+...++|+|+||+|+|+++ .++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 327 ~~~~-~---~~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 400 (592)
T PRK10790 327 QQYG-N---DDRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 (592)
T ss_pred ccCC-C---CccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 3211 1 1112235689999999999742 46999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 807 DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 807 dG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
||+|+++++.+.+|++|+||||||++|+|||||||.++. +++|++++++++.+++++++.++|+||||.+||+|.+|||
T Consensus 401 dg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG 479 (592)
T PRK10790 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479 (592)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 999999999999999999999999999999999999987 6899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChh
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~ 966 (987)
||||||||||||+++|+|||||||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|+
T Consensus 480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~ 559 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQ 559 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHhhh
Q 001980 967 ELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 967 eLl~~~~g~f~~l~~~q~ 984 (987)
||+++ ++.|+++++.|.
T Consensus 560 ~L~~~-~~~y~~l~~~~~ 576 (592)
T PRK10790 560 QLLAA-QGRYWQMYQLQL 576 (592)
T ss_pred HHHhC-CCHHHHHHHHHh
Confidence 99988 799999998774
No 24
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.6e-82 Score=780.70 Aligned_cols=567 Identities=27% Similarity=0.417 Sum_probs=497.3
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
+.+++.+.++.+..+...++++++..++....++++..+++....... ......+...++++.++..++.+++.++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555566666666666666677777777766542211 11222334445555666778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
...+.+...++|.++|++++++|+.||+. .+.|++++|+ +|++.+++.+...+...+..++.+++.++++++++|.+
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~~--~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 280 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFES--RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTL 280 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcCC--CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985 7999999999 69999999998888888877777777788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
++++++++|+++++.++..+..++..++..+..++....+.|+++|+++||+||.++.+.++|.+..+...+...+..+.
T Consensus 281 ~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 360 (694)
T TIGR01846 281 TGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNL 360 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777777777777777777888999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR 727 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 727 (987)
..+...+..++..+..++++|+|.+++..|.+++|.++++..+......|+..+......+.....+.+|+.++++.+++
T Consensus 361 ~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 440 (694)
T TIGR01846 361 GNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTE 440 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999986654
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 728 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 728 ~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
.+.. .....+...|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++|
T Consensus 441 ~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~id 517 (694)
T TIGR01846 441 PRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVD 517 (694)
T ss_pred ccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 3221 111122345789999999999744 3469999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 808 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 808 G~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
|+|+++++.+++|++|+||||||++|+|||||||.++.++++++++++|++.+++++++.++|+||||.++++|.+||||
T Consensus 518 g~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 518 GVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred CEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhH
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~e 967 (987)
||||+||||||+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++++..||+|++|++|+|+|.|+|++
T Consensus 598 q~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~ 677 (694)
T TIGR01846 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEE 677 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHhhh
Q 001980 968 LVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 968 Ll~~~~g~f~~l~~~q~ 984 (987)
|+++ +|.|++|++.|.
T Consensus 678 l~~~-~~~y~~l~~~~~ 693 (694)
T TIGR01846 678 LLAL-QGLYARLWQQQS 693 (694)
T ss_pred HHHc-CChHHHHHHhhc
Confidence 9987 799999998764
No 25
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-82 Score=697.47 Aligned_cols=504 Identities=23% Similarity=0.342 Sum_probs=432.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001980 471 GAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNM 550 (987)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~ 550 (987)
++++...+..++..+..+....++...+|.++|+++...+..-.. ....|+++||+..|++.+|+.+-..+.+.+..+
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~ 143 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVAL 143 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHH
Confidence 456777788888888889999999999999999999988776655 378999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHH
Q 001980 551 TSLLTSFIVAFIVEWRVSLLILGTY-PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSL 629 (987)
Q Consensus 551 ~~~~~~~~~~~~~~~~l~l~~l~~~-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~ 629 (987)
....+..+...+++|.+++.+...+ .+++++..+..++-++..+......+...+++.|.++|....+.||+++++.+.
T Consensus 144 ~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~ 223 (573)
T COG4987 144 VLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA 223 (573)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence 8888888888788888877665544 344455666777777778888888899999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001980 630 FCHELRVPQSQTLRRSLTAGILFGISQFALHASEA-LILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETV-SLAPE 707 (987)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 707 (987)
+.+..+...+...+.....++...+.+++..+..+ ..+|.++ .+..|..+......+.+..+....++.-+. ....+
T Consensus 224 l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~ 302 (573)
T COG4987 224 LEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQH 302 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 99998888888888888888877777776666655 4455544 344555554333333333333333333333 44567
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChH
Q 001980 708 IIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKS 787 (987)
Q Consensus 708 ~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKS 787 (987)
..+...|+.|+.++.+++++...+.++ .+ .+.+ .++++||||+||+. ..++|+|+||++++||||||+||||||||
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~~~~~-~~-~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKS 378 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTFPDEQ-TA-TTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKS 378 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCCCccc-cC-Cccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHH
Confidence 778888999999998877665433111 11 1112 79999999999876 45799999999999999999999999999
Q ss_pred HHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHh
Q 001980 788 SVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVS 867 (987)
Q Consensus 788 TL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~ 867 (987)
|++++|.|.|+|++|+|.++|.+++.++.+++|+.|++++|.+++|++|+|+||.+++|++||||+|+++++++++++++
T Consensus 379 TllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~ 458 (573)
T COG4987 379 TLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLE 458 (573)
T ss_pred HHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc
Q 001980 868 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG 947 (987)
Q Consensus 868 ~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~ 947 (987)
+.|+||+|++||+|.+||||||||+||||+||+|++++||||||.+||++||+.|.+.|.+..+|+|+|+||||+..+..
T Consensus 459 ~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~ 538 (573)
T COG4987 459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER 538 (573)
T ss_pred hChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHh
Q 001980 948 VDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 948 ~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~ 982 (987)
||||+|||+|+++|+|+|++|+++ +|.|++|++.
T Consensus 539 ~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q~ 572 (573)
T COG4987 539 MDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQL 572 (573)
T ss_pred cCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhcc
Confidence 999999999999999999999997 8999999863
No 26
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-83 Score=700.43 Aligned_cols=544 Identities=27% Similarity=0.416 Sum_probs=460.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 001980 433 GFIGPTFAIVMACMIEVFYYRNP-ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEV 511 (987)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~ 511 (987)
.......+.++...++.....+. +.........+..|..+.+.+.++..++.+++.++.+++..+.-.++|.+.+++..
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34444445555555544421111 11112223456778888888999999999999999999999999999999999999
Q ss_pred cccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001980 512 GWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIV-AFIVEWRVSLLILGTYPLLVLANFAQQLSLK 590 (987)
Q Consensus 512 ~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~ 590 (987)
+||-. .++|.+.+...+....+...+...+..++..++.+...... ..-+.+..+++.+..+..+..+.+....+..
T Consensus 123 ~~~~~--~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn 200 (591)
T KOG0057|consen 123 SFFLS--RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRN 200 (591)
T ss_pred HhhcC--CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHH
Confidence 99975 68889988888888888888887777777666655544433 3334555555555555555555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 591 GFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYG 670 (987)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 670 (987)
++.++...+.......+.|++.+..+||+||.|++..++|+..+..+.+...+.+...+++......+.....+.+...+
T Consensus 201 ~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~ 280 (591)
T KOG0057|consen 201 RFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLG 280 (591)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888888999999999999999999999999999999999999888888888888887777778888888888
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeE
Q 001980 671 VHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHV 750 (987)
Q Consensus 671 ~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~v 750 (987)
..=+..+.+++++++.+.....+...++..+.....++.++...+...+...+....... .+.+....+|.|+|+||
T Consensus 281 ~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~---~~~~i~~~~~~I~F~dV 357 (591)
T KOG0057|consen 281 SNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE---AALPIELFGGSIEFDDV 357 (591)
T ss_pred hhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh---ccCCcccCCCcEEEEee
Confidence 888888999999999888888888888988888888888888888877765443222111 11233345678999999
Q ss_pred EEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEcccc
Q 001980 751 DFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP 830 (987)
Q Consensus 751 sf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp 830 (987)
+|.|+ |++++|+++||+|++||||||||+|||||||++++|+||+| ++|+|+|||+||++++++.+|+.||+||||.
T Consensus 358 ~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~ 434 (591)
T KOG0057|consen 358 HFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDS 434 (591)
T ss_pred EEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence 99996 34569999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 001980 831 ALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910 (987)
Q Consensus 831 ~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEa 910 (987)
.||++||.+||.||++.+++||+.++||++++||.+.++|+||+|.|||+|..||||||||++||||+|++|+|+++|||
T Consensus 435 ~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa 514 (591)
T KOG0057|consen 435 VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA 514 (591)
T ss_pred cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhhc
Q 001980 911 TSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 911 TS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~~ 985 (987)
||+||.+||+.|.++|.....++|+|+|+||++++++||+|+|||+|+|+|+|+|+||++ +.+.|+++|..|..
T Consensus 515 TS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~~ 588 (591)
T KOG0057|consen 515 TSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQTS 588 (591)
T ss_pred ccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccccc
Confidence 999999999999999999889999999999999999999999999999999999999999 58999999988753
No 27
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2e-81 Score=758.50 Aligned_cols=564 Identities=32% Similarity=0.516 Sum_probs=504.7
Q ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 411 LLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIM 490 (987)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (987)
++.+.++.++.++++++++++.+++.+..++++..+++....... ......+..+++++.++..++.+++.++..+.
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 81 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWV 81 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556677777777777777777777777777765443221 11222334456666777788888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001980 491 GENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLL 570 (987)
Q Consensus 491 ~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 570 (987)
+.+....+|..+++++++.|.++|+. .+.|++++|+++|++.++..+...+..++..++.++++++++++++|.++++
T Consensus 82 ~~~~~~~lr~~l~~~~~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i 159 (571)
T TIGR02203 82 SNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLI 159 (571)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999975 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001980 571 ILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGI 650 (987)
Q Consensus 571 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (987)
++++.|+.+++.++..+..+...++..+...+....+.|.++|+++||+++.++.+.++|.+..+...+...+..+...+
T Consensus 160 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (571)
T TIGR02203 160 VVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI 239 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888899999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 001980 651 LFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDP 730 (987)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~ 730 (987)
...+...+..+..++++++|..++..|.+++|.++++..+......|+..+......+.+...+.+|+.++++.+++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (571)
T TIGR02203 240 SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT 319 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999876543221
Q ss_pred CCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc
Q 001980 731 DDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD 810 (987)
Q Consensus 731 ~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~d 810 (987)
. ..+..+..+.|+|+||+|+|+++ +.++|+|+||+|+|||+++|+|+||||||||+++|.|+|+|++|+|++||+|
T Consensus 320 ~---~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~ 395 (571)
T TIGR02203 320 G---TRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395 (571)
T ss_pred C---CCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEe
Confidence 1 11112345689999999999754 3479999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcccEEEccccccccccHHHHhccCCC-CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 811 IRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE-GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 811 i~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~-~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
+++++.+++|++++||||||++|+|||||||.++.+ +.+|++++++++.+++++++.++|+|+||++|++|.+||||||
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqr 475 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR 475 (571)
T ss_pred HHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHH
Confidence 999999999999999999999999999999999886 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHh
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
||||||||++++|+|||||||||+||+++++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|+
T Consensus 476 QRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHhhh
Q 001980 970 SRPDGAYSRLLQLQH 984 (987)
Q Consensus 970 ~~~~g~f~~l~~~q~ 984 (987)
++ ++.|+++++.+.
T Consensus 556 ~~-~~~~~~~~~~~~ 569 (571)
T TIGR02203 556 AR-NGLYAQLHNMQF 569 (571)
T ss_pred Hc-CCHHHHHHHHhh
Confidence 87 789999988764
No 28
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.5e-80 Score=750.54 Aligned_cols=565 Identities=28% Similarity=0.429 Sum_probs=482.1
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
+++++.+.++.++.+++.++++++..++....++++..+++..... .....+..+++++.++..+..++..++.
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (588)
T PRK13657 7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK------GDIFPLLAAWAGFGLFNIIAGVLVARHA 80 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666667777777777777777777777777654321 1112223333333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
.+...+....++.++|+++++.|..+|+. .+.|++++|+++|++.+...+...+..++..++.+++.+++++.++|.+
T Consensus 81 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (588)
T PRK13657 81 DRLAHRRRLAVLTEYFERIIQLPLAWHSQ--RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRL 158 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHCc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666667779999999999999974 7999999999999999999888888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
++++++++|+.+++.+...+..+...++..+........+.|.++|+++||+|+.++.+.+++.+..+...+...+....
T Consensus 159 ~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (588)
T PRK13657 159 SLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSW 238 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888777777666667767777777788899999999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR 727 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 727 (987)
..+...+.+++..+..++++++|.+++..|.+++|.++++..+......++..+......+..+..+.+|+.+.++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~ 318 (588)
T PRK13657 239 WALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPD 318 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 77777777788888888899999999999999999999999888888999999999999999999999999998876443
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 728 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 728 ~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
.+.. +...+..+..+.|+|+||+|+|+++ .++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 319 ~~~~-~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~ 395 (588)
T PRK13657 319 VRDP-PGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395 (588)
T ss_pred cCCC-CCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 2111 1111112234679999999999743 359999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 808 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 808 G~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
|+|+++++.+++|++|+||||||++|+|||||||.++.++.+|++++++++.+++++++.++|+|+||.++++|.+||||
T Consensus 396 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred CEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhH
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~e 967 (987)
|||||||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|++
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHhhh
Q 001980 968 LVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 968 Ll~~~~g~f~~l~~~q~ 984 (987)
|+++ ++.|++|++.+.
T Consensus 556 l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 556 LVAR-GGRFAALLRAQG 571 (588)
T ss_pred HHHC-CChHHHHHHHhh
Confidence 9987 799999998663
No 29
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1e-80 Score=743.92 Aligned_cols=521 Identities=21% Similarity=0.265 Sum_probs=446.1
Q ss_pred HHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 412 LKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEF--VFIYIGAGLYAVVAYLIQHYFFSI 489 (987)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 489 (987)
+++.++.++.++..++++++..++....+++++.+++....... ....+ +..++++.+...++.++..++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (529)
T TIGR02868 5 LPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-----VLYLSVAAVAVRAFGIGRAVFRYLERLVGHD 79 (529)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666676777777777777765432211 11111 111223445566777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001980 490 MGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSL 569 (987)
Q Consensus 490 ~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 569 (987)
.+.+...++|.++|+++++.|..||++ +++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRRR--FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCcccccc--CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999975 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001980 570 LILGTYPLLVLAN-FAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA 648 (987)
Q Consensus 570 ~~l~~~pl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (987)
++++.+|++.++. ++..+..+...++.+...++...++.|.++|+++||+|++++.+.++|.+..+...+...+..+..
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877776554 444444455556666777888999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001980 649 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI 728 (987)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~ 728 (987)
.+...+..++..+..++.+|+|.+++..|.++.+.++++..+......++..+......+.+...+.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 88888888888888888899999999999999999999888888888899998888999999999999999999765542
Q ss_pred CCCCCC-CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 729 DPDDPD-AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 729 ~~~~~~-~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
+..+.. ....++..+.|+|+||+|+|+++ .++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 318 PEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 211111 11112234679999999999753 359999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 808 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 808 G~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
|+|++++ .+++|++|+||||||+||+|||||||.++.++++|+++++|++.+++++++.++|+||||++||+|.+||||
T Consensus 396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 942 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl 942 (987)
||||||||||++++|+|||||||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999988999999999996
No 30
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=5e-80 Score=746.54 Aligned_cols=567 Identities=35% Similarity=0.555 Sum_probs=491.0
Q ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 411 LLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIM 490 (987)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (987)
++++.++.++.+.+.+++.++.+++....++.+..+++..+.... ......+..+++++.++..++.+++.++....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 9 LWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS---SGLLNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455566666666677777777777777777765432211 11122234444445555666777888888999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001980 491 GENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLL 570 (987)
Q Consensus 491 ~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 570 (987)
+.+....+|..+++++++.|.++|+. .+.|++++|+++|++.+++.+...+..++..++.+++++++++.++|.++++
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL 163 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999975 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001980 571 ILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGI 650 (987)
Q Consensus 571 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (987)
+++.+|+.++..++..+..++..++...........+.|.++|+++||+|+.++.+.++|.+..+...+...+......+
T Consensus 164 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (576)
T TIGR02204 164 VLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888877777777777778888888888999999999999999999999999999999999888777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 001980 651 LFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDP 730 (987)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~ 730 (987)
...+...+.+...++++++|.+++..|.++.|.++++..+......++..+.....++.....+.+|+.++++.+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 66666666667777888899999999999999999999888889999999999999999999999999999876543221
Q ss_pred CCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc
Q 001980 731 DDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD 810 (987)
Q Consensus 731 ~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~d 810 (987)
.........+..+.|+|+||+|+|+++.+.++|+|+||+|+|||+++|+|+||||||||+++|+|+|+|++|+|++||+|
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 11111111223467999999999986433579999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 811 IRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 811 i~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
+++++.+++|++|+|+||||++|+|||||||.++.++.+|++++++++.+++.+++.++|+|+||+++|+|.+|||||||
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhc
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
||+||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++.+..+|+|++|++|+++|.|+|++|++
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred CCCchHHHHHHhh
Q 001980 971 RPDGAYSRLLQLQ 983 (987)
Q Consensus 971 ~~~g~f~~l~~~q 983 (987)
+ ++.|++|++.|
T Consensus 564 ~-~~~~~~l~~~~ 575 (576)
T TIGR02204 564 K-GGLYARLARLQ 575 (576)
T ss_pred c-CChHHHHHhhc
Confidence 6 89999999876
No 31
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1e-79 Score=739.23 Aligned_cols=565 Identities=28% Similarity=0.423 Sum_probs=484.2
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
+++++++.++.++.++..++++++..++....+++++.+++.....+. ...++.+++++.++..+..++..++.
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVAREA 80 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777888888888888888888888876543211 11122222233333444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
.....+...++|.++|++++++|++||+. +++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.+
T Consensus 81 ~~~~~~~~~~lr~~~~~~l~~l~~~~~~~--~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 158 (585)
T TIGR01192 81 DRLAHGRRATLLTEAFGRIISMPLSWHQQ--RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRL 158 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677789999999999999985 7899999999999999999999888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
++++++++|+++++.....++.++..++.....+...+.+.|+++|+++||+|+.++.+.+++.+..+...+...+..+.
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (585)
T TIGR01192 159 SIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDW 238 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998988877777777777666667777788899999999999999999999999999999988888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR 727 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 727 (987)
..+...+...+..+..++++++|.+++..|.+++|.++++..+......++..+......+..+..+.+|+.+..+.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 318 (585)
T TIGR01192 239 WALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQ 318 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 77777777777777788889999999999999999999998888888899999999999999999999999998876543
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 728 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 728 ~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
..... .....+...+.|+|+||+|+|+++ .++|+|+||+|++||++||||+||||||||+++|.|+|+|++|+|++|
T Consensus 319 ~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 395 (585)
T TIGR01192 319 REEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILID 395 (585)
T ss_pred ccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEEC
Confidence 22111 111112234679999999999743 358999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 808 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 808 G~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
|+|+++++.+++|++++||||||.+|++|++|||.++.+++++++++++++.+++++++.++|+|+||.+|++|.+||||
T Consensus 396 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG 475 (585)
T TIGR01192 396 GIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475 (585)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhH
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~e 967 (987)
|||||+|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQE 555 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHhhh
Q 001980 968 LVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 968 Ll~~~~g~f~~l~~~q~ 984 (987)
|+++ +|.|+++|+.|.
T Consensus 556 l~~~-~~~y~~l~~~~~ 571 (585)
T TIGR01192 556 LIQK-DGRFYKLLRRSG 571 (585)
T ss_pred HHHC-CChHHHHHHhCc
Confidence 9987 799999998774
No 32
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.8e-80 Score=797.76 Aligned_cols=571 Identities=28% Similarity=0.477 Sum_probs=503.9
Q ss_pred CchHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001980 404 PDGYFLRLLKLNA-PEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLI 482 (987)
Q Consensus 404 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (987)
...++..++++.. .++..++++++++++.+++.++++++++.+++.+... .....+++.+++++++.+++.++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~------~~~~~~~~~~~~~~i~~~~~~~~ 116 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG------ENVNDIIFSLVLIGIFQFILSFI 116 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777754 4667788888999999999999999999988865421 11233455666777778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 483 QHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFI 562 (987)
Q Consensus 483 ~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 562 (987)
+.+++.+.+.+...++|.++|++++++|++|||. ++.|.+.+|++.|++.+...+...+..++..++.++++++++|+
T Consensus 117 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~--~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~ 194 (1466)
T PTZ00265 117 SSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN--NPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF 194 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999996 57899999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHH
Q 001980 563 VEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTL 642 (987)
Q Consensus 563 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~ 642 (987)
++|.+++++++++|+++++.++..++++...++.+...+...+.+.|++.|+++||+|+.|+++.++|.+..+...+...
T Consensus 195 ~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~ 274 (1466)
T PTZ00265 195 KNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYIL 274 (1466)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888877777777777889999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 643 RRSLTAGILFGISQFALHASEALILWYGVHLVGKG--------VSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGES 714 (987)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 714 (987)
+.....++..++..++.++..++.+|+|.+++..| .++.+.+++++...+.....+..+...+..+..+..+
T Consensus 275 k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a 354 (1466)
T PTZ00265 275 KANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEA 354 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888999999999999999886 4778888877776666666666677777888899999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 001980 715 VGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 715 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~ 794 (987)
++|+++.++.+++.++.. .+... +..+.|+|+||+|+|+++++.++|+|+||+|++||++||||+||||||||+++|.
T Consensus 355 ~~ri~~ii~~~~~~~~~~-~~~~~-~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~ 432 (1466)
T PTZ00265 355 TNSLYEIINRKPLVENND-DGKKL-KDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432 (1466)
T ss_pred HHHHHHHHcCCCCCCCCC-CCccC-CCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999999998766543211 11111 1224799999999998665557999999999999999999999999999999999
Q ss_pred ccCCCCCceEEE-CCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCC---------------------------
Q 001980 795 RFYDPTAGKVMI-DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--------------------------- 846 (987)
Q Consensus 795 rl~~p~~G~I~i-dG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--------------------------- 846 (987)
|+|+|++|+|++ ||+|+++++.+++|++|++|||+|.||++||+|||.++..
T Consensus 433 gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1466)
T PTZ00265 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRN 512 (1466)
T ss_pred HhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccc
Confidence 999999999999 6799999999999999999999999999999999998631
Q ss_pred ------------------------------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 847 ------------------------------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 847 ------------------------------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+.+|+++++|++.+++++|+.++|+||||.+|++|.+|||||||||||||
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIAR 592 (1466)
T PTZ00265 513 SCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIAR 592 (1466)
T ss_pred cccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCC-----------------
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDG----------------- 957 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G----------------- 957 (987)
||+++|+|||||||||+||+++++.|++.|++.. +++|+|+||||+++++.||+|+||++|
T Consensus 593 All~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~ 672 (1466)
T PTZ00265 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTK 672 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccc
Confidence 9999999999999999999999999999999986 489999999999999999999999986
Q ss_pred ------------------------------EEEEecChhHHhcCCCchHHHHHHhhh
Q 001980 958 ------------------------------RIVEQGSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 958 ------------------------------~ive~Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
+|+|+|+|+||+++++|.|+.|++.|.
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 673 DNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred cccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 599999999999866999999998874
No 33
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=8.3e-80 Score=739.17 Aligned_cols=541 Identities=25% Similarity=0.380 Sum_probs=469.1
Q ss_pred HHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Q 001980 436 GPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 515 (987)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd 515 (987)
....+++++.+++........ ......|+.+++++.++..++.++..++....+.+...++|.++|+++++.|++||+
T Consensus 11 ~~~~p~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~ 88 (569)
T PRK10789 11 QLIPPKVVGIIVDGVTEQHMT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYL 88 (569)
T ss_pred HHHHHHHHHHHHHHhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence 344455566666544322111 111223444555555566677778888888899999999999999999999999997
Q ss_pred cCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001980 516 EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVA-FIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAG 594 (987)
Q Consensus 516 ~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~ 594 (987)
. +++|++++|+++|++.+...+...+..++..++.++++++++ +.++|.+++++++++|+.+++.+...+..++..+
T Consensus 89 ~--~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~ 166 (569)
T PRK10789 89 R--HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFK 166 (569)
T ss_pred C--CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 789999999999999999888888888887766666665555 5789999999999889888877777777777677
Q ss_pred HHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 595 DTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLV 674 (987)
Q Consensus 595 ~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv 674 (987)
+.+...+.....+.|.++|+++||+|+.++.+.++|.+..+...+...+..+.......+.+....+..++++++|.+++
T Consensus 167 ~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv 246 (569)
T PRK10789 167 LAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMV 246 (569)
T ss_pred HHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888999999999999999999999999999999998888888877777777767677777777788889999999
Q ss_pred HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEEC
Q 001980 675 GKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAY 754 (987)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y 754 (987)
..|.+++|.++++..+......|+..+......+.....+.+|+.++++.+++.+... .+.++..+.|+|+||+|+|
T Consensus 247 ~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~~y 323 (569)
T PRK10789 247 VNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTY 323 (569)
T ss_pred HcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEEEC
Confidence 9999999999999999988899999999999999999999999999987654322111 1112335689999999999
Q ss_pred CCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEcccccccc
Q 001980 755 PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA 834 (987)
Q Consensus 755 ~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~ 834 (987)
++. +.++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|++++||||+|++|+
T Consensus 324 ~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~ 402 (569)
T PRK10789 324 PQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS 402 (569)
T ss_pred CCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecc
Confidence 753 3469999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 001980 835 ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 914 (987)
Q Consensus 835 gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~L 914 (987)
+||||||.++.+++++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+|||||||||+|
T Consensus 403 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~L 482 (569)
T PRK10789 403 DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAV 482 (569)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccC
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhhc
Q 001980 915 DAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 915 D~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~~ 985 (987)
|+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ ++.|++|++.|..
T Consensus 483 D~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 483 DGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 999999999999998889999999999999999999999999999999999999987 7899999987643
No 34
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-82 Score=670.14 Aligned_cols=491 Identities=31% Similarity=0.449 Sum_probs=435.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 001980 485 YFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIV-AFIV 563 (987)
Q Consensus 485 ~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~ 563 (987)
.++...++.+...+--+.|.|+..+++.|.-. ..+|-+..........++..+...+...+..++-+...+++ ...+
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~--r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE--RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh--cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 45667777888888889999999999999865 34444444445555566666666666666666655554444 4457
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHH
Q 001980 564 EWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR 643 (987)
Q Consensus 564 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~ 643 (987)
+|+.+++.++++.+++++.....-..-.+.|+...+.+.......+++-+.+|+|.||.|+.+..+|...++.+.+...+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 89999888888888887776665555666778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001980 644 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLD 723 (987)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~ 723 (987)
.+....++......+...........+...+..|.++.|+++..-.++.....|+........++.++...+++.+++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 88888888888888888888888888888999999999999988888888888988888888999999999999999988
Q ss_pred ccCCCCCCCCCCCCCC-CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc
Q 001980 724 RSTRIDPDDPDAEPVE-TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802 (987)
Q Consensus 724 ~~~~~~~~~~~~~~~~-~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G 802 (987)
.+.+... .+..++.+ -..|.|.|+||+|.|. |..|+|+++||++++|+++||||+||+||||+.++|+||||+++|
T Consensus 242 ~~~~v~d-~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 242 VEAEVSD-APDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred cchhhcc-CCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 7665432 22333334 3468899999999995 456899999999999999999999999999999999999999999
Q ss_pred eEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCC
Q 001980 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGV 882 (987)
Q Consensus 803 ~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~ 882 (987)
.|.|||+||+++..+.+|+.||+||||.+||+.|+..|+.+|+|+++++|++.|++.+++++||+++|+||||.|||+|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEe
Q 001980 883 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962 (987)
Q Consensus 883 ~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~ 962 (987)
.||||||||+||||++|++|+||+||||||+||..||+.||.+|++..+++|.++|||||+||.++|.|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHH
Q 001980 963 GSHSELVSRPDGAYSRLLQ 981 (987)
Q Consensus 963 Gt~~eLl~~~~g~f~~l~~ 981 (987)
|+|+||+++ +|.|++||.
T Consensus 479 g~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred CcHHHHHHc-CChHHHHhc
Confidence 999999998 999999996
No 35
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.3e-77 Score=716.99 Aligned_cols=527 Identities=24% Similarity=0.302 Sum_probs=454.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 420 PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVR 499 (987)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 499 (987)
+.+..+++++++.+++....+++.+.+++....... .......+..++++++++..++.++..++....+.+...++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 3 RALALLGLLGALGALLIIAQAWLLARVIDGLISAGE--PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777788888887776531111 111223345556666677788888999999999999999999
Q ss_pred HHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001980 500 RMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLV 579 (987)
Q Consensus 500 ~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~ 579 (987)
.++|+++++.|..||+. .++|++++|+++|++.++..+...+..++..++.+++++++++.++|.+++++++.+|+.+
T Consensus 81 ~~l~~~l~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~ 158 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQG--RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIP 158 (529)
T ss_pred HHHHHHHHhCCchhhcc--CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999974 7999999999999999999999999999999888888899999999999999998888887
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 580 LANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFAL 659 (987)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (987)
++.+...++.+...++.+....+....+.|+++|+++||+|+.++.+.++|.+..++..+...+..+.......+..++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666667777777788899999999999999999999999999999988888877777776666666666666
Q ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCC
Q 001980 660 HASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVE 739 (987)
Q Consensus 660 ~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~ 739 (987)
.+...++..++...+..|.++++.++++..+......++..+......+.+...+.+|+.++++.+++..+. . ....
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~--~-~~~~ 315 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK--A-PVTA 315 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--c-CCCC
Confidence 665555555555666689999999998888888888899999999999999999999999999744321111 1 1111
Q ss_pred CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH
Q 001980 740 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 740 ~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l 819 (987)
+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++
T Consensus 316 ~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 316 APAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred CCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHH
Confidence 123679999999999754 3469999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 820 RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 820 R~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
|++++||||||++|+|||||||.++.++++|++++++++.++++++++++|+||||++||+|.+||||||||++||||++
T Consensus 395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~ 474 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL 474 (529)
T ss_pred HhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEE
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVV 954 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl 954 (987)
++|+|||||||||+||++|++.|++.|++..+++|+|+||||+++++.||+|+||
T Consensus 475 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 475 RDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999999988899999999999999999999986
No 36
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.2e-79 Score=688.99 Aligned_cols=481 Identities=31% Similarity=0.493 Sum_probs=371.8
Q ss_pred cEEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC----ccEEEECCEeCCCCCHHH
Q 001980 99 NIEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN----AGHVLLDNVDIKTLQLRW 173 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~-~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~----~G~i~~~g~~~~~~~~~~ 173 (987)
-++++|++..|..... ..+++||||++.+||++||||+|||||||++++|.|++++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975422 35899999999999999999999999999999999999987 899999999998887654
Q ss_pred H---h-cceEEEcCCCC-Cchh--cHHHHHhc----CCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccc--cCCCCCCC
Q 001980 174 L---R-DQIGLVNQEPA-LFAT--TILENILY----GKPEATMAEVEAAASAANAHSFITLLPNGYSTQV--GERGVQLS 240 (987)
Q Consensus 174 ~---~-~~i~~v~Q~~~-l~~~--tv~eni~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~--~~~g~~LS 240 (987)
+ | +.|+|+||+|+ .+|. ||.+-|.- ... ...++.. ..+.+.++.. |+.... ...+.+||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~-~~~~ea~-----~~a~elL~~V--gl~~~~~~~~yPheLS 156 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK-GSRAEAR-----KRAVELLEQV--GLPDPERRDRYPHQLS 156 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc-ccHHHHH-----HHHHHHHHHc--CCCChhhhccCCcccC
Confidence 3 3 46999999984 3433 66665542 111 1111111 1112223322 332222 55888999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEe
Q 001980 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVET 317 (987)
Q Consensus 241 gGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~ 317 (987)
||||||+.||+||+.+|++||+||||++||+.++..|.+.|+++. .|.++|+||||+..+.. ||||+||++|+++|.
T Consensus 157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999986 48999999999999876 899999999999999
Q ss_pred cChHHHHHhhh-hHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccc
Q 001980 318 GTHEELIAKAG-AYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAE 396 (987)
Q Consensus 318 g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (987)
|+.++++++.. .|....
T Consensus 237 G~~~~i~~~p~hpYT~~L-------------------------------------------------------------- 254 (539)
T COG1123 237 GPTEEILSNPQHPYTRGL-------------------------------------------------------------- 254 (539)
T ss_pred cCHHHHHhccCCcccHHH--------------------------------------------------------------
Confidence 99999875310 000000
Q ss_pred cccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHH
Q 001980 397 TDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYA 476 (987)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (987)
+. ..
T Consensus 255 ---------------l~---------------------------------------a~---------------------- 258 (539)
T COG1123 255 ---------------LA---------------------------------------AV---------------------- 258 (539)
T ss_pred ---------------Hh---------------------------------------hC----------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 477 VVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTS 556 (987)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~ 556 (987)
| ..+... ..
T Consensus 259 ---------------------------------p--~~~~~~-~~----------------------------------- 267 (539)
T COG1123 259 ---------------------------------P--RLGDEK-II----------------------------------- 267 (539)
T ss_pred ---------------------------------C--Cccccc-cc-----------------------------------
Confidence 0 000000 00
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhH
Q 001980 557 FIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRV 636 (987)
Q Consensus 557 ~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~ 636 (987)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 637 PQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVG 716 (987)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 716 (987)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCC--------CccceeeeeEEEeCCcEEEEEcCCCCChHH
Q 001980 717 SVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRP--------DVVVFKDFNLRIRAGQSQALVGASGSGKSS 788 (987)
Q Consensus 717 ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~--------~~~vL~~vsl~I~~Ge~vaIVG~sGsGKST 788 (987)
..+... + . +...-++++|++.+|..+. ...+++||||+|++||++||||+|||||||
T Consensus 268 ------~~~~~~-~--~------~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKST 332 (539)
T COG1123 268 ------RLPRRG-P--L------RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKST 332 (539)
T ss_pred ------cccccc-c--c------ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHH
Confidence 000000 0 0 0112489999999997421 236899999999999999999999999999
Q ss_pred HHHHHhccCCCCCceEEECCcc--CCCCCHHHHhcccEEEccccccc---cccHHHHhccCCC---C----CCHHHHHHH
Q 001980 789 VIALIERFYDPTAGKVMIDGKD--IRRLNLKSLRLKIGLVQQEPALF---AASIFDNIAYGKE---G----ATEAEVVEA 856 (987)
Q Consensus 789 L~~lL~rl~~p~~G~I~idG~d--i~~i~l~~lR~~i~~VpQdp~lF---~gTIreNL~~~~~---~----~sd~ei~~a 856 (987)
|.++|+|+++|++|+|.++|.| ++.-....+|+++-+|+|||+-. ..||+++|.-+.. . ...+.+.+.
T Consensus 333 lar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~l 412 (539)
T COG1123 333 LARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAEL 412 (539)
T ss_pred HHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHH
Confidence 9999999999999999999977 34334566889999999999742 4699999864321 1 112346666
Q ss_pred HHHcCchh-hHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CC
Q 001980 857 ARAANVHG-FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GR 933 (987)
Q Consensus 857 l~~a~l~~-~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~ 933 (987)
++.+++.. +..+- ...||||||||+||||||..+|++||+|||||+||+.+.+.|.+.|.++.+ |.
T Consensus 413 l~~VgL~~~~l~ry-----------P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~ 481 (539)
T COG1123 413 LELVGLPPEFLDRY-----------PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL 481 (539)
T ss_pred HHHcCCCHHHHhcC-----------chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCC
Confidence 77887764 33333 356999999999999999999999999999999999999999999998764 79
Q ss_pred eEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHh
Q 001980 934 TTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 934 TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~ 982 (987)
|.|+|||+++.++. ||||+||++|+|||.|+.+++.+++...|.+....
T Consensus 482 t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 482 TYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred EEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHH
Confidence 99999999999987 89999999999999999999999999999876543
No 37
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.8e-76 Score=704.22 Aligned_cols=537 Identities=24% Similarity=0.342 Sum_probs=457.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 419 WPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRV 498 (987)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 498 (987)
++.++..++++++..++....++++..+++....... ......+..+++++.++..++.+++.++....+.+...++
T Consensus 5 k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 5 KSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS---VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666667777777777765542211 1112234445555566677888888999999999999999
Q ss_pred HHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001980 499 RRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAD-RISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPL 577 (987)
Q Consensus 499 ~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl 577 (987)
|.++|+++++.|+..+ +...+++++|++.++..+.. .+..++..++.++ .+++++.++|.+++++++.+|+
T Consensus 82 r~~~~~~ll~~~~~~~-------~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l 153 (544)
T TIGR01842 82 NQPIFAASFSATLRRG-------KIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVV 153 (544)
T ss_pred HHHHHHHHhcCcccCc-------cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999998533 34678899999999998877 4455555555444 4467888999999988888887
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001980 578 LVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQF 657 (987)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (987)
++++.++..+..++..++.+...++....+.|+++|+++||+|+.++.+.++|.+..++..+...+.....+....+...
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (544)
T TIGR01842 154 LVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKY 233 (544)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666666667777778888999999999999999999999999999999998888887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC
Q 001980 658 ALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEP 737 (987)
Q Consensus 658 ~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~ 737 (987)
+..+..++++++|.+++..|.+++|.++++..+......++..+......+.....+.+|+.++++.+++..+. .+
T Consensus 234 ~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~ 309 (544)
T TIGR01842 234 FRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MP 309 (544)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CC
Confidence 77777788889999999999999999999999988899999999999999999999999999998765432211 11
Q ss_pred CCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH
Q 001980 738 VETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 817 (987)
Q Consensus 738 ~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~ 817 (987)
.++..+.|+++||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+
T Consensus 310 ~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~ 388 (544)
T TIGR01842 310 LPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE 388 (544)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHH
Confidence 12234679999999999753 34699999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 818 SLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
.+|++++||||||++|++|+||||.++.+++++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||
T Consensus 389 ~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 389 TFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred HHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998777789999999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
++++|+|||||||||+||+++++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|++|+++
T Consensus 469 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999999999999875 68999999999999999999999999999999999999753
No 38
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-76 Score=707.39 Aligned_cols=497 Identities=26% Similarity=0.381 Sum_probs=368.1
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC----------
Q 001980 99 NIEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK---------- 167 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~---------- 167 (987)
.|+++|++++|+... ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996321 246999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cceEEEcCCC--CCchh-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCc---ccccC
Q 001980 168 TLQLR---WLR-DQIGLVNQEP--ALFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYS---TQVGE 234 (987)
Q Consensus 168 ~~~~~---~~~-~~i~~v~Q~~--~l~~~-tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~---t~~~~ 234 (987)
..+.. .+| ++||||+|+| .+++. ||+||+.++.. .....+.. ..+.+.++.+ |+. .....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~ 164 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM-----VEAKRMLDQV--RIPEAQTILSR 164 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChhhHHhC
Confidence 12222 233 4799999998 57764 99999987521 11111111 1122334444 542 34577
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeC
Q 001980 235 RGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQ 311 (987)
Q Consensus 235 ~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~ 311 (987)
...+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.++++. + |+|+|+|||+++.+.. ||||++|++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence 788999999999999999999999999999999999999999999999985 3 8999999999999865 899999999
Q ss_pred CEEEEecChHHHHHhhh-hHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccc
Q 001980 312 GQVVETGTHEELIAKAG-AYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIE 390 (987)
Q Consensus 312 G~i~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (987)
|++++.|+++++..... .|..... . .... .. .
T Consensus 245 G~i~~~g~~~~~~~~~~~~~~~~l~---------~-----------~~~~-------------~~--------------~ 277 (623)
T PRK10261 245 GEAVETGSVEQIFHAPQHPYTRALL---------A-----------AVPQ-------------LG--------------A 277 (623)
T ss_pred CeecccCCHHHhhcCCCChhhhhhh---------h-----------ccCc-------------cc--------------c
Confidence 99999999887643210 0000000 0 0000 00 0
Q ss_pred cccccccccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHH
Q 001980 391 MVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYI 470 (987)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (987)
. .. .
T Consensus 278 ~------------------------------------------------------------~~--~-------------- 281 (623)
T PRK10261 278 M------------------------------------------------------------KG--L-------------- 281 (623)
T ss_pred c------------------------------------------------------------cc--c--------------
Confidence 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001980 471 GAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNM 550 (987)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~ 550 (987)
..+ .-+... ..
T Consensus 282 -------------------------------------~~~-~~~~~~--~~----------------------------- 292 (623)
T PRK10261 282 -------------------------------------DYP-RRFPLI--SL----------------------------- 292 (623)
T ss_pred -------------------------------------cCC-cccccc--cc-----------------------------
Confidence 000 000000 00
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHH
Q 001980 551 TSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLF 630 (987)
Q Consensus 551 ~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~ 630 (987)
T Consensus 293 -------------------------------------------------------------------------------- 292 (623)
T PRK10261 293 -------------------------------------------------------------------------------- 292 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 631 CHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIR 710 (987)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (987)
...
T Consensus 293 -------~~~---------------------------------------------------------------------- 295 (623)
T PRK10261 293 -------EHP---------------------------------------------------------------------- 295 (623)
T ss_pred -------ccc----------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCC--------CccceeeeeEEEeCCcEEEEEcCC
Q 001980 711 GGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRP--------DVVVFKDFNLRIRAGQSQALVGAS 782 (987)
Q Consensus 711 ~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~--------~~~vL~~vsl~I~~Ge~vaIVG~s 782 (987)
. ...+.......+ ....-|+++||+++|+.+. ..++|+||||+|++||++||+|+|
T Consensus 296 ---------~-~~~~~~~~~~~~------~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~n 359 (623)
T PRK10261 296 ---------A-KQEPPIEQDTVV------DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGES 359 (623)
T ss_pred ---------c-ccCccccccccc------CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCC
Confidence 0 000000000000 0011499999999996311 235999999999999999999999
Q ss_pred CCChHHHHHHHhccCCCCCceEEECCccCCCCCHH---HHhcccEEEccccc--ccc-ccHHHHhccCC--CCC-C----
Q 001980 783 GSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLRLKIGLVQQEPA--LFA-ASIFDNIAYGK--EGA-T---- 849 (987)
Q Consensus 783 GsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~---~lR~~i~~VpQdp~--lF~-gTIreNL~~~~--~~~-s---- 849 (987)
|||||||+++|.|+.+|++|+|.++|.++..++.. .+|++|+||||+|. ++. .|+++|+.++. ... .
T Consensus 360 GsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~ 439 (623)
T PRK10261 360 GSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAA 439 (623)
T ss_pred CCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999999999877643 46788999999983 664 59999987531 111 1
Q ss_pred HHHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001980 850 EAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER 928 (987)
Q Consensus 850 d~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~ 928 (987)
++++.+.++.+++. +.... .+ ..||||||||++|||||+.+|+|||||||||+||+.+.+.|.+.|++
T Consensus 440 ~~~~~~~L~~~gL~~~~~~~-------~~----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~ 508 (623)
T PRK10261 440 AARVAWLLERVGLLPEHAWR-------YP----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508 (623)
T ss_pred HHHHHHHHHHcCCCHHHhhC-------Cc----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 23456677777774 33322 22 46999999999999999999999999999999999999999999988
Q ss_pred HcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001980 929 LMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978 (987)
Q Consensus 929 ~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~ 978 (987)
..+ +.|+|+|||+++.+.. ||||+||++|+|+|.|++++++.++...|.+
T Consensus 509 l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 509 LQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHH
Confidence 753 7899999999999876 8999999999999999999998876666754
No 39
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-76 Score=699.36 Aligned_cols=459 Identities=23% Similarity=0.412 Sum_probs=357.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeCCCCCHHH-Hh
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP--NAGHVLLDNVDIKTLQLRW-LR 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~~ 175 (987)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++...+... ++
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999973 3589999999999999999999999999999999999996 8999999999997766543 46
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPE-----ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
+.++|++|++.+++. |++||+.++... ...++..+ .+.+.++.+ |+.........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 789999999988865 999999986431 11112111 123345554 66555677788999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
||||+.+|++|||||||++||+.++..+.+.|.++. +|+|+|++||+++.+.. ||+|++|++|+++..|+.+++....
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 234 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDD 234 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHHH
Confidence 999999999999999999999999999999998875 48999999999999875 8999999999998876533210000
Q ss_pred hhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchH
Q 001980 328 GAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGY 407 (987)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (987)
.
T Consensus 235 -----~-------------------------------------------------------------------------- 235 (506)
T PRK13549 235 -----I-------------------------------------------------------------------------- 235 (506)
T ss_pred -----H--------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
+..+
T Consensus 236 ---------------------------------------~~~~------------------------------------- 239 (506)
T PRK13549 236 ---------------------------------------ITMM------------------------------------- 239 (506)
T ss_pred ---------------------------------------HHHh-------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
+..+ .
T Consensus 240 --------------------------~~~~---~---------------------------------------------- 244 (506)
T PRK13549 240 --------------------------VGRE---L---------------------------------------------- 244 (506)
T ss_pred --------------------------hCcC---c----------------------------------------------
Confidence 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR 727 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 727 (987)
. ...+.
T Consensus 245 --------------------------------------------------------------------~------~~~~~ 250 (506)
T PRK13549 245 --------------------------------------------------------------------T------ALYPR 250 (506)
T ss_pred --------------------------------------------------------------------c------ccccc
Confidence 0 00000
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-CCCceEEE
Q 001980 728 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-PTAGKVMI 806 (987)
Q Consensus 728 ~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-p~~G~I~i 806 (987)
... + +....|+++|++++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+
T Consensus 251 ~~~--~------~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~ 322 (506)
T PRK13549 251 EPH--T------IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFI 322 (506)
T ss_pred ccc--C------CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEE
Confidence 000 0 00114899999999953223459999999999999999999999999999999999998 59999999
Q ss_pred CCccCCCCCH-HHHhcccEEEcccc---ccc-cccHHHHhccCCC-C------CCH----HHHHHHHHHcCchhhHhhCC
Q 001980 807 DGKDIRRLNL-KSLRLKIGLVQQEP---ALF-AASIFDNIAYGKE-G------ATE----AEVVEAARAANVHGFVSALP 870 (987)
Q Consensus 807 dG~di~~i~l-~~lR~~i~~VpQdp---~lF-~gTIreNL~~~~~-~------~sd----~ei~~al~~a~l~~~i~~lp 870 (987)
+|.++...+. +.+|++++||||++ .+| ..|+.+|+.++.. . .+. +++.+.++..++.+
T Consensus 323 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 396 (506)
T PRK13549 323 DGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT------ 396 (506)
T ss_pred CCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC------
Confidence 9999875543 45678899999997 355 4699999976421 0 111 23444455544421
Q ss_pred CcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-c
Q 001980 871 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-V 948 (987)
Q Consensus 871 ~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~ 948 (987)
+-.+.++ ..||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. |
T Consensus 397 ~~~~~~~----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~ 472 (506)
T PRK13549 397 ASPELAI----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLS 472 (506)
T ss_pred CCccccc----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhC
Confidence 1123333 4699999999999999999999999999999999999999999999864 58899999999998865 8
Q ss_pred CEEEEEeCCEEEEecChhHHh
Q 001980 949 DCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 949 D~Iivl~~G~ive~Gt~~eLl 969 (987)
|++++|++|+++..|+++++.
T Consensus 473 d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 473 DRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred CEEEEEECCEEEEEeccccCC
Confidence 999999999999999988773
No 40
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.3e-75 Score=695.41 Aligned_cols=469 Identities=28% Similarity=0.457 Sum_probs=360.1
Q ss_pred cEEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCCHH
Q 001980 99 NIEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTLQLR 172 (987)
Q Consensus 99 ~i~~~~~~~~y~~~-~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 172 (987)
.++++|++++|++. ...++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124689999999999999999999999999999999999987 799999999998776543
Q ss_pred ---HHh-cceEEEcCCCC--Cch-hcHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcc---cccCCCCCC
Q 001980 173 ---WLR-DQIGLVNQEPA--LFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYST---QVGERGVQL 239 (987)
Q Consensus 173 ---~~~-~~i~~v~Q~~~--l~~-~tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t---~~~~~g~~L 239 (987)
.+| ++|+|++|+|. +++ .|+++|+.++.. .....+..+ .+.+.++.+ |+.. .......+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARG-----EILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChHHHHhhCCccc
Confidence 233 57999999985 444 499999874310 111111111 112334443 4432 246677899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEE
Q 001980 240 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVE 316 (987)
Q Consensus 240 SgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~ 316 (987)
|||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. .|+|+|+|||+++.+.. ||||++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 37999999999998875 89999999999999
Q ss_pred ecChHHHHHhhhhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccc
Q 001980 317 TGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAE 396 (987)
Q Consensus 317 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (987)
.|+.+++..... . .
T Consensus 238 ~g~~~~~~~~~~-------------------------------~------------------~----------------- 251 (529)
T PRK15134 238 QNRAATLFSAPT-------------------------------H------------------P----------------- 251 (529)
T ss_pred eCCHHHHhhCCC-------------------------------C------------------H-----------------
Confidence 887765521100 0 0
Q ss_pred cccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHH
Q 001980 397 TDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYA 476 (987)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (987)
+.+ .
T Consensus 252 -----------~~~--------------------------------------~--------------------------- 255 (529)
T PRK15134 252 -----------YTQ--------------------------------------K--------------------------- 255 (529)
T ss_pred -----------HHH--------------------------------------H---------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 477 VVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTS 556 (987)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~ 556 (987)
+++ .+ +
T Consensus 256 -------------------------~~~----~~---------~------------------------------------ 261 (529)
T PRK15134 256 -------------------------LLN----SE---------P------------------------------------ 261 (529)
T ss_pred -------------------------HHH----hC---------c------------------------------------
Confidence 000 00 0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhH
Q 001980 557 FIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRV 636 (987)
Q Consensus 557 ~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~ 636 (987)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 637 PQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVG 716 (987)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 716 (987)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCC--------CCccceeeeeEEEeCCcEEEEEcCCCCChHH
Q 001980 717 SVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSR--------PDVVVFKDFNLRIRAGQSQALVGASGSGKSS 788 (987)
Q Consensus 717 ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~--------~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKST 788 (987)
...+. .+ .... ...|+++|++++|+.. .+.++|+|+||+|++||++||+|+|||||||
T Consensus 262 ------~~~~~-~~-~~~~------~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKST 327 (529)
T PRK15134 262 ------SGDPV-PL-PEPA------SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKST 327 (529)
T ss_pred ------ccccc-cc-CCCC------CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHH
Confidence 00000 00 0000 1148999999999521 1246999999999999999999999999999
Q ss_pred HHHHHhccCCCCCceEEECCccCCCCCHHH---HhcccEEEcccc--cccc-ccHHHHhccCCC----CCC----HHHHH
Q 001980 789 VIALIERFYDPTAGKVMIDGKDIRRLNLKS---LRLKIGLVQQEP--ALFA-ASIFDNIAYGKE----GAT----EAEVV 854 (987)
Q Consensus 789 L~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR~~i~~VpQdp--~lF~-gTIreNL~~~~~----~~s----d~ei~ 854 (987)
|+++|.|+++ ++|+|.+||.++..++... +|++++||||++ .+|. .|+++|+.++.. ... ++.+.
T Consensus 328 Llk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 406 (529)
T PRK15134 328 TGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVI 406 (529)
T ss_pred HHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHH
Confidence 9999999984 8999999999998776543 478899999998 3665 599999976421 011 23455
Q ss_pred HHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--
Q 001980 855 EAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-- 931 (987)
Q Consensus 855 ~al~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-- 931 (987)
++++..++. +... . ...+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+
T Consensus 407 ~~l~~~~l~~~~~~-------~----~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 475 (529)
T PRK15134 407 AVMEEVGLDPETRH-------R----YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKH 475 (529)
T ss_pred HHHHHcCCCHHHHh-------c----CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhh
Confidence 666666664 2222 2 2346999999999999999999999999999999999999999999998752
Q ss_pred CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001980 932 GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAY 976 (987)
Q Consensus 932 ~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f 976 (987)
++|||+|||+++.+.. ||+|++|++|+|++.|+++++++.+...|
T Consensus 476 ~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 521 (529)
T PRK15134 476 QLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEY 521 (529)
T ss_pred CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCCChH
Confidence 7899999999998865 89999999999999999999987654444
No 41
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-75 Score=688.00 Aligned_cols=456 Identities=21% Similarity=0.380 Sum_probs=354.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-Hhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 177 (987)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999974 34899999999999999999999999999999999999999999999999998776654 3457
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCC---------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEA---------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
|+|++|++.+++. |++||+.++.... ...+.. ..+.+.++.+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 9999999988876 9999998763210 111111 1123344444 665556777889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
+|||||+.+|++|||||||++||+.++..+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999999999885 48999999999999875 89999999999988876554311
Q ss_pred hhhhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCc
Q 001980 326 KAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPD 405 (987)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (987)
.. ...
T Consensus 235 ~~-----~~~---------------------------------------------------------------------- 239 (510)
T PRK09700 235 DD-----IVR---------------------------------------------------------------------- 239 (510)
T ss_pred HH-----HHH----------------------------------------------------------------------
Confidence 00 000
Q ss_pred hHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 406 GYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHY 485 (987)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (987)
..
T Consensus 240 -------------------------------------------~~----------------------------------- 241 (510)
T PRK09700 240 -------------------------------------------LM----------------------------------- 241 (510)
T ss_pred -------------------------------------------Hh-----------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001980 486 FFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEW 565 (987)
Q Consensus 486 ~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (987)
+.....+
T Consensus 242 ----------------------------~~~~~~~--------------------------------------------- 248 (510)
T PRK09700 242 ----------------------------VGRELQN--------------------------------------------- 248 (510)
T ss_pred ----------------------------cCCCccc---------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHH
Q 001980 566 RVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRS 645 (987)
Q Consensus 566 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (987)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK09700 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001980 646 LTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRS 725 (987)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~ 725 (987)
+ .....
T Consensus 249 -----------------------------------------------------------------------~---~~~~~ 254 (510)
T PRK09700 249 -----------------------------------------------------------------------R---FNAMK 254 (510)
T ss_pred -----------------------------------------------------------------------c---ccccc
Confidence 0 00000
Q ss_pred CCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEE
Q 001980 726 TRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 805 (987)
Q Consensus 726 ~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~ 805 (987)
+. +..+. ....|+++|+++.|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.
T Consensus 255 ~~--~~~~~------~~~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 321 (510)
T PRK09700 255 EN--VSNLA------HETVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR 321 (510)
T ss_pred cc--cccCC------CCcEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE
Confidence 00 00000 011499999999762 289999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCH-HHHhcccEEEcccc---cccc-ccHHHHhccCCCC-----------CCH----HHHHHHHHHcCchhh
Q 001980 806 IDGKDIRRLNL-KSLRLKIGLVQQEP---ALFA-ASIFDNIAYGKEG-----------ATE----AEVVEAARAANVHGF 865 (987)
Q Consensus 806 idG~di~~i~l-~~lR~~i~~VpQdp---~lF~-gTIreNL~~~~~~-----------~sd----~ei~~al~~a~l~~~ 865 (987)
++|.++...+. +.+|++++||||++ .+|. -|+++|+.++... ... +++.++++..++.
T Consensus 322 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-- 399 (510)
T PRK09700 322 LNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK-- 399 (510)
T ss_pred ECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC--
Confidence 99999876543 45778999999984 4665 5999999865210 011 2234455554442
Q ss_pred HhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchh
Q 001980 866 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLST 944 (987)
Q Consensus 866 i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~t 944 (987)
++..+.+++ .||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.
T Consensus 400 ----~~~~~~~~~----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~ 471 (510)
T PRK09700 400 ----CHSVNQNIT----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPE 471 (510)
T ss_pred ----CCCccCccc----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 022344444 599999999999999999999999999999999999999999999864 57899999999998
Q ss_pred hhc-cCEEEEEeCCEEEEecChhH
Q 001980 945 IRG-VDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 945 i~~-~D~Iivl~~G~ive~Gt~~e 967 (987)
+.. ||+|++|++|++++.+++.+
T Consensus 472 ~~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 472 IITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HHhhCCEEEEEECCEEEEEecCcc
Confidence 754 89999999999999887633
No 42
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.7e-72 Score=671.50 Aligned_cols=534 Identities=16% Similarity=0.149 Sum_probs=433.4
Q ss_pred HHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 407 YFLRLLKLNA-PEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHY 485 (987)
Q Consensus 407 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (987)
..++++++.+ +.++.++++++++++.++.....++++..+++.. .. ... ..+..++++.++..++.++..+
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~----~~--~~~--~~~~~~~~~~~~~~~~~~~~~~ 75 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEE----NF--LGQ--GSLFSFGGLCLLALLFRIGADI 75 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----Cc--ccc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777 7888888887777777776666666555554311 00 000 1122234445566677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001980 486 FFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEW 565 (987)
Q Consensus 486 ~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (987)
+....+.+...++|.++|+++++.|+.||++ +++|++++|+++|++.++..+.. +..++..++.++++++++++++|
T Consensus 76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 152 (555)
T TIGR01194 76 FPAYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSV 152 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh--cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence 8999999999999999999999999999985 79999999999999999998864 77778888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHH--HHHHHHHHHHhHHHHHHHH
Q 001980 566 RVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQN--KILSLFCHELRVPQSQTLR 643 (987)
Q Consensus 566 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~--~~~~~~~~~~~~~~~~~~~ 643 (987)
.+++++++.+|+.+++..+..++.++..++.+...+.....+.|.+.|++++|+|+.++ ...+++.+..+...+...+
T Consensus 153 ~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T TIGR01194 153 PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999988888877777666666666666777777888999999999999999999954 5567777777777666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001980 644 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLD 723 (987)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~ 723 (987)
..........+...+......+.++++... +.++.|.++++..+......|+..+......+.++..+.+|+.++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~ 309 (555)
T TIGR01194 233 EILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGE 309 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444555433 78999999999999999999999999999999999999999999976
Q ss_pred ccCCCCCC--CCCCC-----CCCCccccEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 001980 724 RSTRIDPD--DPDAE-----PVETIRGEIELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 724 ~~~~~~~~--~~~~~-----~~~~~~g~I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~ 794 (987)
.+.+.++. .+... ++....+.|+|+||+|+|++.+ ..++|+|+||+|++||++|||||||||||||+++|.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 310 RFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred hhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 32111110 01000 1112346899999999997532 236999999999999999999999999999999999
Q ss_pred ccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCC
Q 001980 795 RFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYK 874 (987)
Q Consensus 795 rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gld 874 (987)
|+|+|++|+|++||+|+++++.+++|+++++|||||++|++|+++|+ .+++++++++++++.+++++++..+|+|||
T Consensus 390 g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 466 (555)
T TIGR01194 390 GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFS 466 (555)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccC
Confidence 99999999999999999999999999999999999999999999996 356789999999999999999999999999
Q ss_pred CccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-H-cCCCeEEEEecCchhhhccCEEE
Q 001980 875 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER-L-MRGRTTVLVAHRLSTIRGVDCIG 952 (987)
Q Consensus 875 t~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~-~-~~~~TvI~IaHRl~ti~~~D~Ii 952 (987)
|. .+|||||||||+||||++++|+|||||||||+||++|++.+++.+.+ . .+++|+|+||||++++..||+|+
T Consensus 467 t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~ 541 (555)
T TIGR01194 467 TT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQII 541 (555)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE
Confidence 95 68999999999999999999999999999999999999999987753 3 36899999999999999999999
Q ss_pred EEeCCEEEEe
Q 001980 953 VVQDGRIVEQ 962 (987)
Q Consensus 953 vl~~G~ive~ 962 (987)
||++|+++|.
T Consensus 542 ~l~~G~i~~~ 551 (555)
T TIGR01194 542 KLAAGCIVKD 551 (555)
T ss_pred EEECCEEEEe
Confidence 9999999985
No 43
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.3e-74 Score=684.40 Aligned_cols=451 Identities=24% Similarity=0.387 Sum_probs=352.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-Hhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 177 (987)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 35899999999999999999999999999999999999999999999999987655433 4567
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEA------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
++|++|++.+++. |++||+.++.... ...+..+ .+.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 9999999988865 9999999864211 1111111 122344444 565556677789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhhh
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAG 328 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 328 (987)
|||+.+|++|||||||++||+.+++.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+.+++....
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~- 232 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDS- 232 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHHH-
Confidence 99999999999999999999999999999998875 47899999999999865 8999999999998776433221000
Q ss_pred hHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchHH
Q 001980 329 AYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYF 408 (987)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (987)
+
T Consensus 233 ----~--------------------------------------------------------------------------- 233 (501)
T PRK10762 233 ----L--------------------------------------------------------------------------- 233 (501)
T ss_pred ----H---------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 409 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFS 488 (987)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (987)
...+
T Consensus 234 --------------------------------------~~~~-------------------------------------- 237 (501)
T PRK10762 234 --------------------------------------IEMM-------------------------------------- 237 (501)
T ss_pred --------------------------------------HHHh--------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001980 489 IMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVS 568 (987)
Q Consensus 489 ~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 568 (987)
+...
T Consensus 238 -------------------------~~~~--------------------------------------------------- 241 (501)
T PRK10762 238 -------------------------VGRK--------------------------------------------------- 241 (501)
T ss_pred -------------------------cCCC---------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001980 569 LLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA 648 (987)
Q Consensus 569 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (987)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001980 649 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI 728 (987)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~ 728 (987)
. . ...+..
T Consensus 242 ---------------------------------------------------------------------~-~--~~~~~~ 249 (501)
T PRK10762 242 ---------------------------------------------------------------------L-E--DQYPRL 249 (501)
T ss_pred ---------------------------------------------------------------------c-c--cccccc
Confidence 0 0 000000
Q ss_pred CCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 729 DPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 729 ~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
+ .+ +..-.|+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||
T Consensus 250 -~-~~------~~~~~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g 313 (501)
T PRK10762 250 -D-KA------PGEVRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG 313 (501)
T ss_pred -c-cC------CCCcEEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 0 00 0011489999984 269999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCH-HHHhcccEEEcccc---ccc-cccHHHHhccCCCC--------CC----HHHHHHHHHHcCchhhHhhCCC
Q 001980 809 KDIRRLNL-KSLRLKIGLVQQEP---ALF-AASIFDNIAYGKEG--------AT----EAEVVEAARAANVHGFVSALPN 871 (987)
Q Consensus 809 ~di~~i~l-~~lR~~i~~VpQdp---~lF-~gTIreNL~~~~~~--------~s----d~ei~~al~~a~l~~~i~~lp~ 871 (987)
.++...+. +.+|++++||||+| .+| ..|+++|+.++... .+ ++++.++++..++.+ +
T Consensus 314 ~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~ 387 (501)
T PRK10762 314 HEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------P 387 (501)
T ss_pred EECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------C
Confidence 99987665 34678899999997 344 46999999764210 11 123444455544420 1
Q ss_pred cCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cC
Q 001980 872 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VD 949 (987)
Q Consensus 872 gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D 949 (987)
-.+.+ ...||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||
T Consensus 388 ~~~~~----~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d 463 (501)
T PRK10762 388 SMEQA----IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSD 463 (501)
T ss_pred CccCc----hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCC
Confidence 12333 34699999999999999999999999999999999999999999999875 47899999999998865 79
Q ss_pred EEEEEeCCEEEEecChhHHh
Q 001980 950 CIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 950 ~Iivl~~G~ive~Gt~~eLl 969 (987)
+|++|++|++++.|+++++.
T Consensus 464 ~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 464 RILVMHEGRISGEFTREQAT 483 (501)
T ss_pred EEEEEECCEEEEEeccccCC
Confidence 99999999999999887763
No 44
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.3e-74 Score=688.11 Aligned_cols=457 Identities=26% Similarity=0.453 Sum_probs=350.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEEC---------------
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY--DPNAGHVLLD--------------- 162 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~--~~~~G~i~~~--------------- 162 (987)
|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999963 35899999999999999999999999999999999996 7999999997
Q ss_pred --------CEeCC-------CCC---HHHHhcceEEEcCC-CCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHH
Q 001980 163 --------NVDIK-------TLQ---LRWLRDQIGLVNQE-PALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSF 220 (987)
Q Consensus 163 --------g~~~~-------~~~---~~~~~~~i~~v~Q~-~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~ 220 (987)
|.++. ..+ ...+++.++|++|+ +.+++. |++||+.++... ....+.. ..+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAV-----GRAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHH
Confidence 22221 111 12356789999998 577764 999999875321 1111111 112234
Q ss_pred HHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCC
Q 001980 221 ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLS 298 (987)
Q Consensus 221 ~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~ 298 (987)
++.+ |++........+||||||||++|||||+.+|++|||||||++||+.+++++.+.|+++. .|+|||+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 4444 66555667788999999999999999999999999999999999999999999999884 3899999999999
Q ss_pred cccc-CCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccc
Q 001980 299 TIRN-VDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNL 377 (987)
Q Consensus 299 ~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (987)
.+.. ||+|++|++|+++..|+++++.... .
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~------~------------------------------------------- 261 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEVVAVF------M------------------------------------------- 261 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCHHHHHHHH------H-------------------------------------------
Confidence 9865 8999999999998776554331100 0
Q ss_pred cccccCCCCcccccccccccccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q 001980 378 SYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPAS 457 (987)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (987)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHH
Q 001980 458 MERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKS 537 (987)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~ 537 (987)
..
T Consensus 262 ---------------------------------------------------------~~--------------------- 263 (520)
T TIGR03269 262 ---------------------------------------------------------EG--------------------- 263 (520)
T ss_pred ---------------------------------------------------------hh---------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHH
Q 001980 538 AIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTV 617 (987)
Q Consensus 538 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI 617 (987)
+ .
T Consensus 264 ---------------------------~---------------------------~------------------------ 265 (520)
T TIGR03269 264 ---------------------------V---------------------------S------------------------ 265 (520)
T ss_pred ---------------------------c---------------------------h------------------------
Confidence 0 0
Q ss_pred HHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q 001980 618 AAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANS 697 (987)
Q Consensus 618 raf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~ 697 (987)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCC--CCCccceeeeeEEEeCCcE
Q 001980 698 VAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPS--RPDVVVFKDFNLRIRAGQS 775 (987)
Q Consensus 698 ~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~--~~~~~vL~~vsl~I~~Ge~ 775 (987)
+. ..... .+ .. ...|+++|++++|++ +...++|+|+||+|++||+
T Consensus 266 -------------------~~----~~~~~-~~---~~------~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~ 312 (520)
T TIGR03269 266 -------------------EV----EKECE-VE---VG------EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEI 312 (520)
T ss_pred -------------------hh----ccccc-cC---CC------CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCE
Confidence 00 00000 00 00 114999999999953 1124699999999999999
Q ss_pred EEEEcCCCCChHHHHHHHhccCCCCCceEEEC-Cc---cCCCCC---HHHHhcccEEEcccccccc-ccHHHHhccCCC-
Q 001980 776 QALVGASGSGKSSVIALIERFYDPTAGKVMID-GK---DIRRLN---LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE- 846 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id-G~---di~~i~---l~~lR~~i~~VpQdp~lF~-gTIreNL~~~~~- 846 (987)
+||+|+||||||||+++|.|+++|++|+|.++ |. ++...+ ...+|++++|+||++.+|. .|+++|+.++..
T Consensus 313 ~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~ 392 (520)
T TIGR03269 313 FGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL 392 (520)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc
Confidence 99999999999999999999999999999996 64 344332 2356788999999998886 599999975311
Q ss_pred CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 001980 847 GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922 (987)
Q Consensus 847 ~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I 922 (987)
.. .++++.++++..++.+.- ..+-++.++ ..||||||||++|||||+.+|+||||||||++||+.+.+.+
T Consensus 393 ~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l 466 (520)
T TIGR03269 393 ELPDELARMKAVITLKMVGFDEEK--AEEILDKYP----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDV 466 (520)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCcc--chhhhhCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 11 123455666666664310 000123333 46999999999999999999999999999999999999999
Q ss_pred HHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 923 QEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 923 ~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
.+.|++.. .+.|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 467 ~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 467 THSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999875 27899999999999875 89999999999999999998864
No 45
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-74 Score=679.57 Aligned_cols=453 Identities=25% Similarity=0.394 Sum_probs=351.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ 177 (987)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999974 348999999999999999999999999999999999999999999999999875543 456778
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPE-----ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
|+|++|++.+++. |++||+.++... ....+..+ .+.+.++.+ |+.........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999988876 999999986421 11111111 123445554 5555556777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhhhh
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAGA 329 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 329 (987)
||+.+|+++||||||++||+.+++.+.+.|.++. +|+|+|+|||+++.+.. ||+|++|++|+++..++..+.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~------ 227 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQ------ 227 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCcccc------
Confidence 9999999999999999999999999999999875 48999999999999865 899999999999754321000
Q ss_pred HHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchHHH
Q 001980 330 YASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFL 409 (987)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (987)
... +
T Consensus 228 ----------------------------~~~---------------------------------~--------------- 231 (501)
T PRK11288 228 ----------------------------VDR---------------------------------D--------------- 231 (501)
T ss_pred ----------------------------CCH---------------------------------H---------------
Confidence 000 0
Q ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 410 RLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSI 489 (987)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (987)
.+ .
T Consensus 232 ~~-----------------------------------~------------------------------------------ 234 (501)
T PRK11288 232 QL-----------------------------------V------------------------------------------ 234 (501)
T ss_pred HH-----------------------------------H------------------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001980 490 MGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSL 569 (987)
Q Consensus 490 ~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 569 (987)
... .... .
T Consensus 235 --------------~~~-------~~~~---~------------------------------------------------ 242 (501)
T PRK11288 235 --------------QAM-------VGRE---I------------------------------------------------ 242 (501)
T ss_pred --------------HHh-------cCCC---c------------------------------------------------
Confidence 000 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001980 570 LILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAG 649 (987)
Q Consensus 570 ~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (987)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 001980 650 ILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRID 729 (987)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~ 729 (987)
. ..... .
T Consensus 243 ------------------------------------------------------------------~------~~~~~-~ 249 (501)
T PRK11288 243 ------------------------------------------------------------------G------DIYGY-R 249 (501)
T ss_pred ------------------------------------------------------------------c------ccccc-c
Confidence 0 00000 0
Q ss_pred CCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCc
Q 001980 730 PDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK 809 (987)
Q Consensus 730 ~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~ 809 (987)
+. + +.+..++++|++++ .+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.
T Consensus 250 ~~-~------~~~~~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~ 315 (501)
T PRK11288 250 PR-P------LGEVRLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGK 315 (501)
T ss_pred cc-C------CCCcEEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCE
Confidence 00 0 00114899999842 3899999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-HHHHhcccEEEccccc---cc-cccHHHHhccCCCCC--------C----HHHHHHHHHHcCchhhHhhCCCc
Q 001980 810 DIRRLN-LKSLRLKIGLVQQEPA---LF-AASIFDNIAYGKEGA--------T----EAEVVEAARAANVHGFVSALPNA 872 (987)
Q Consensus 810 di~~i~-l~~lR~~i~~VpQdp~---lF-~gTIreNL~~~~~~~--------s----d~ei~~al~~a~l~~~i~~lp~g 872 (987)
++...+ .+.+|++++|+||+|. +| ..|+.+|+.++.... . ++++.+.++..++. ++-
T Consensus 316 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~ 389 (501)
T PRK11288 316 PIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK------TPS 389 (501)
T ss_pred ECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc------cCC
Confidence 987543 3456789999999973 55 579999997642110 1 12344445554441 112
Q ss_pred CCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCE
Q 001980 873 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDC 950 (987)
Q Consensus 873 ldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~ 950 (987)
.+++++ +||||||||++|||||+.+|++|||||||++||+.+.+.+++.|+++. .+.|||+|||+++.+.. ||+
T Consensus 390 ~~~~~~----~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~ 465 (501)
T PRK11288 390 REQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADR 465 (501)
T ss_pred ccCccc----cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCE
Confidence 344444 699999999999999999999999999999999999999999998875 47899999999998865 799
Q ss_pred EEEEeCCEEEEecChhHHh
Q 001980 951 IGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 951 Iivl~~G~ive~Gt~~eLl 969 (987)
|++|++|++++.|++++..
T Consensus 466 i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 466 IVVMREGRIAGELAREQAT 484 (501)
T ss_pred EEEEECCEEEEEEccccCC
Confidence 9999999999999988764
No 46
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.2e-74 Score=680.23 Aligned_cols=457 Identities=23% Similarity=0.371 Sum_probs=350.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeCCCCCHHH-Hhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP--NAGHVLLDNVDIKTLQLRW-LRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~~~ 176 (987)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 3589999999999999999999999999999999999987 7999999999998766543 456
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCCCcccc-cCCCCCCChHHHHHHH
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKPE------ATMAEVEAAASAANAHSFITLLPNGYSTQV-GERGVQLSGGQKQRIA 248 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~-~~~g~~LSgGqkqRia 248 (987)
+|+|++|++.+++. |++||+.++... ...++..+ .+.+.++.+ |+.... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 79999999988865 999999886421 11111111 123344444 444332 3456789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++..|+.+++...
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH
Confidence 9999999999999999999999999999999998875 48899999999999876 899999999999865432110000
Q ss_pred hhhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCch
Q 001980 327 AGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDG 406 (987)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (987)
T Consensus 232 -------------------------------------------------------------------------------- 231 (500)
T TIGR02633 232 -------------------------------------------------------------------------------- 231 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 407 YFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF 486 (987)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (987)
.. ...+
T Consensus 232 ---~~-----------------------------------~~~~------------------------------------ 237 (500)
T TIGR02633 232 ---DI-----------------------------------ITMM------------------------------------ 237 (500)
T ss_pred ---HH-----------------------------------HHHH------------------------------------
Confidence 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001980 487 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR 566 (987)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (987)
+... .
T Consensus 238 ---------------------------~~~~---~--------------------------------------------- 242 (500)
T TIGR02633 238 ---------------------------VGRE---I--------------------------------------------- 242 (500)
T ss_pred ---------------------------hCcc---c---------------------------------------------
Confidence 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 567 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 646 (987)
Q Consensus 567 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (987)
T Consensus 243 -------------------------------------------------------------------------------- 242 (500)
T TIGR02633 243 -------------------------------------------------------------------------------- 242 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 647 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
. . ..+
T Consensus 243 ---------------------------------------------------------------------~---~--~~~- 247 (500)
T TIGR02633 243 ---------------------------------------------------------------------T---S--LYP- 247 (500)
T ss_pred ---------------------------------------------------------------------c---c--ccc-
Confidence 0 0 000
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-CCceEE
Q 001980 727 RIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-TAGKVM 805 (987)
Q Consensus 727 ~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-~~G~I~ 805 (987)
.. + .+. .+-.|+++|++++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.
T Consensus 248 ~~-~-~~~------~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~ 319 (500)
T TIGR02633 248 HE-P-HEI------GDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVF 319 (500)
T ss_pred cc-c-cCC------CCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 00 0 000 01148999999999432123589999999999999999999999999999999999995 899999
Q ss_pred ECCccCCCCCH-HHHhcccEEEcccc---cccc-ccHHHHhccCCC-------CCC----HHHHHHHHHHcCchhhHhhC
Q 001980 806 IDGKDIRRLNL-KSLRLKIGLVQQEP---ALFA-ASIFDNIAYGKE-------GAT----EAEVVEAARAANVHGFVSAL 869 (987)
Q Consensus 806 idG~di~~i~l-~~lR~~i~~VpQdp---~lF~-gTIreNL~~~~~-------~~s----d~ei~~al~~a~l~~~i~~l 869 (987)
++|.++...+. ..+|++++|+||++ .+|. .|+++|+.++.. ... .+++.++++..++.+
T Consensus 320 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 394 (500)
T TIGR02633 320 INGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT----- 394 (500)
T ss_pred ECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC-----
Confidence 99999875443 56788999999996 3554 699999976421 011 123445555554421
Q ss_pred CCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-
Q 001980 870 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG- 947 (987)
Q Consensus 870 p~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~- 947 (987)
.-.+.++ ..||||||||++|||||+++|++|||||||++||+.+...+++.|++.. ++.|||+|||+++.+..
T Consensus 395 -~~~~~~~----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~ 469 (500)
T TIGR02633 395 -ASPFLPI----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGL 469 (500)
T ss_pred -CCccCcc----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 1123444 4699999999999999999999999999999999999999999998864 57899999999999865
Q ss_pred cCEEEEEeCCEEEEecChhHH
Q 001980 948 VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 948 ~D~Iivl~~G~ive~Gt~~eL 968 (987)
||+|++|++|+++..++.+++
T Consensus 470 ~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 470 SDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred CCEEEEEECCEEEEEEccccC
Confidence 799999999999988765543
No 47
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.4e-73 Score=673.67 Aligned_cols=462 Identities=22% Similarity=0.383 Sum_probs=356.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh-cc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR-DQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~ 177 (987)
.|+++|++++|++ ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999974 3489999999999999999999999999999999999999999999999999877665544 46
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
++|++|++.+++. |++||+.++.... .+..+ .+.+.++.+ |+.........+||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASMQ-----KMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccc--hHHHH-----HHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999988876 9999999875321 11111 112334444 555556777889999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhhhhHHHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAGAYASLI 334 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 334 (987)
|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.... ..
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~-----~~ 233 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD-----II 233 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH-----HH
Confidence 99999999999999999999999999875 48999999999998865 8999999999999998877653210 00
Q ss_pred HHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchHHHHHHHH
Q 001980 335 RFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKL 414 (987)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (987)
. ... .. . ...
T Consensus 234 ~--~~~-~~-~------------~~~------------------------------------------------------ 243 (510)
T PRK15439 234 Q--AIT-PA-A------------REK------------------------------------------------------ 243 (510)
T ss_pred H--HHh-Cc-c------------ccc------------------------------------------------------
Confidence 0 000 00 0 000
Q ss_pred hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 415 NAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENL 494 (987)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (987)
T Consensus 244 -------------------------------------------------------------------------------- 243 (510)
T PRK15439 244 -------------------------------------------------------------------------------- 243 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001980 495 TTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGT 574 (987)
Q Consensus 495 ~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~ 574 (987)
.+ . ..
T Consensus 244 ---------------~~-----~--~~----------------------------------------------------- 248 (510)
T PRK15439 244 ---------------SL-----S--AS----------------------------------------------------- 248 (510)
T ss_pred ---------------cc-----c--cc-----------------------------------------------------
Confidence 00 0 00
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001980 575 YPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGI 654 (987)
Q Consensus 575 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (987)
.
T Consensus 249 ---------------------------------------------------------------~---------------- 249 (510)
T PRK15439 249 ---------------------------------------------------------------Q---------------- 249 (510)
T ss_pred ---------------------------------------------------------------c----------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 001980 655 SQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPD 734 (987)
Q Consensus 655 ~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~ 734 (987)
+. . ...+.. .+..+
T Consensus 250 --------------------------------------------------------------~~-~-~~~~~~-~~~~~- 263 (510)
T PRK15439 250 --------------------------------------------------------------KL-W-LELPGN-RRQQA- 263 (510)
T ss_pred --------------------------------------------------------------cc-c-cccccc-ccccC-
Confidence 00 0 000000 00000
Q ss_pred CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC
Q 001980 735 AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL 814 (987)
Q Consensus 735 ~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i 814 (987)
+.+-.|+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++...
T Consensus 264 -----~~~~~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~ 330 (510)
T PRK15439 264 -----AGAPVLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINAL 330 (510)
T ss_pred -----CCCceEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCC
Confidence 0011489999983 159999999999999999999999999999999999999999999999999877
Q ss_pred CHHH-HhcccEEEcccc---cccc-ccHHHHhccCC----CC--CC---HHHHHHHHHHcCchhhHhhCCCcCCCccCCC
Q 001980 815 NLKS-LRLKIGLVQQEP---ALFA-ASIFDNIAYGK----EG--AT---EAEVVEAARAANVHGFVSALPNAYKTPVGER 880 (987)
Q Consensus 815 ~l~~-lR~~i~~VpQdp---~lF~-gTIreNL~~~~----~~--~s---d~ei~~al~~a~l~~~i~~lp~gldt~vge~ 880 (987)
+... +|++|+|+||++ .+|. .|+.+|+.... +. .. ++.+.++++..++. ++..+.++
T Consensus 331 ~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~--- 401 (510)
T PRK15439 331 STAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK------FNHAEQAA--- 401 (510)
T ss_pred CHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC------CCCccCcc---
Confidence 6654 467899999996 3565 59999985320 10 01 12234444444432 12234444
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCE
Q 001980 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGR 958 (987)
Q Consensus 881 G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ 958 (987)
..||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||+|++|++|+
T Consensus 402 -~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~ 480 (510)
T PRK15439 402 -RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGE 480 (510)
T ss_pred -ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 4699999999999999999999999999999999999999999999875 47899999999999876 89999999999
Q ss_pred EEEecChhHHhc
Q 001980 959 IVEQGSHSELVS 970 (987)
Q Consensus 959 ive~Gt~~eLl~ 970 (987)
++..|+++++..
T Consensus 481 i~~~~~~~~~~~ 492 (510)
T PRK15439 481 ISGALTGAAINV 492 (510)
T ss_pred EEEEEccccCCH
Confidence 999999988754
No 48
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.9e-73 Score=598.27 Aligned_cols=471 Identities=32% Similarity=0.493 Sum_probs=366.0
Q ss_pred cEEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCCHH
Q 001980 99 NIEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTLQLR 172 (987)
Q Consensus 99 ~i~~~~~~~~y~~~-~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 172 (987)
-++++|++..|... ....++++|||+|++||.+||||+||||||-..+.++|+++. -+|+|.++|.++-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 48899999988632 245689999999999999999999999999999999999974 379999999999888776
Q ss_pred HHhc----ceEEEcCCCC--Cchh-cHHHHHh----cCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCc---ccccCCCCC
Q 001980 173 WLRD----QIGLVNQEPA--LFAT-TILENIL----YGKPEATMAEVEAAASAANAHSFITLLPNGYS---TQVGERGVQ 238 (987)
Q Consensus 173 ~~~~----~i~~v~Q~~~--l~~~-tv~eni~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---t~~~~~g~~ 238 (987)
.+|+ +|++++|+|. |-+- ||...|. +... +......+...+.++.. |+. -.+...+.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg------~~~~~Ar~r~lelL~~V--gI~~p~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRG------LSRAAARARALELLELV--GIPEPEKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHc--CCCchhhhhhhCCcc
Confidence 6553 7999999994 3232 5555443 3211 11111111122222221 332 245677889
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEE
Q 001980 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVV 315 (987)
Q Consensus 239 LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~ 315 (987)
|||||||||.||.||+.+|++||.||||.|||...+..|.+.|+++.+ |..+++||||+..+++ ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999999853 8999999999999987 7999999999999
Q ss_pred EecChHHHHHhh-hhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccc
Q 001980 316 ETGTHEELIAKA-GAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSN 394 (987)
Q Consensus 316 ~~g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (987)
|+|+.+++++.. ..|.+..
T Consensus 238 E~~~t~~lF~~PqHpYTr~L------------------------------------------------------------ 257 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKL------------------------------------------------------------ 257 (534)
T ss_pred ecCcHHHHhhCCCChHHHHH------------------------------------------------------------
Confidence 999877765431 0010000
Q ss_pred cccccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHH
Q 001980 395 AETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGL 474 (987)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (987)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 475 YAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLL 554 (987)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~ 554 (987)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHH
Q 001980 555 TSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHEL 634 (987)
Q Consensus 555 ~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~ 634 (987)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 635 RVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGES 714 (987)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 714 (987)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCC--------CccceeeeeEEEeCCcEEEEEcCCCCCh
Q 001980 715 VGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRP--------DVVVFKDFNLRIRAGQSQALVGASGSGK 786 (987)
Q Consensus 715 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~--------~~~vL~~vsl~I~~Ge~vaIVG~sGsGK 786 (987)
++.++.-.+ .+.+....--++.+||...|+-++ ...++++|||+.++||++||||+|||||
T Consensus 258 -------l~aeP~g~~----~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGK 326 (534)
T COG4172 258 -------LAAEPSGDP----PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGK 326 (534)
T ss_pred -------HhcCCCCCC----CCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCc
Confidence 000010000 000011112467777777775322 1248999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCceEEECCccCCCCCHHH---HhcccEEEcccccc-c--cccHHHHhc----cCCCCCC----HHH
Q 001980 787 SSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LRLKIGLVQQEPAL-F--AASIFDNIA----YGKEGAT----EAE 852 (987)
Q Consensus 787 STL~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR~~i~~VpQdp~l-F--~gTIreNL~----~~~~~~s----d~e 852 (987)
|||-.+|+|+.+++ |+|.++|.||..++.+. +|+++-+|+|||+= + ..||.+=|. .-.|..+ ++.
T Consensus 327 sTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~r 405 (534)
T COG4172 327 STLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQR 405 (534)
T ss_pred chHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHH
Confidence 99999999999876 99999999999998776 68999999999962 2 245555443 2233333 456
Q ss_pred HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--
Q 001980 853 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-- 930 (987)
Q Consensus 853 i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-- 930 (987)
+.+|++.+|++.-... .-...||||||||||||||++-+|++++||||||+||..-.++|.+.++++.
T Consensus 406 v~~aL~EVGLDp~~r~----------RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k 475 (534)
T COG4172 406 VIEALEEVGLDPATRN----------RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK 475 (534)
T ss_pred HHHHHHHcCCChhHhh----------cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH
Confidence 7889999998754432 1234699999999999999999999999999999999999999999999875
Q ss_pred CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHHHH
Q 001980 931 RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 931 ~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l 979 (987)
.+-+-++|+|+|..++. ||+|+||.+|+|||+|+-++++++|...|.+-
T Consensus 476 ~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 476 HGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred hCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 46799999999999976 89999999999999999999999999999764
No 49
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-73 Score=668.50 Aligned_cols=450 Identities=21% Similarity=0.356 Sum_probs=346.8
Q ss_pred EEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcceEE
Q 001980 102 FKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQIGL 180 (987)
Q Consensus 102 ~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~ 180 (987)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999974 358999999999999999999999999999999999999999999999999876554 345678999
Q ss_pred EcCCCCCchh-cHHHHHhcCCCCC-----CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 181 VNQEPALFAT-TILENILYGKPEA-----TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 181 v~Q~~~l~~~-tv~eni~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
++|++.++.. |++||+.++.... ...+.. ..+.+.++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 9999988765 9999998764210 111111 1123445554 6666667778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhhhhHHH
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAGAYAS 332 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 332 (987)
.+|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++... .
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-----~ 225 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD-----K 225 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH-----H
Confidence 9999999999999999999999999998875 48999999999998865 899999999999987654332000 0
Q ss_pred HHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchHHHHHH
Q 001980 333 LIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLL 412 (987)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (987)
.
T Consensus 226 ~------------------------------------------------------------------------------- 226 (491)
T PRK10982 226 I------------------------------------------------------------------------------- 226 (491)
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 413 KLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGE 492 (987)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (987)
...
T Consensus 227 ----------------------------------~~~------------------------------------------- 229 (491)
T PRK10982 227 ----------------------------------IAM------------------------------------------- 229 (491)
T ss_pred ----------------------------------HHH-------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001980 493 NLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLIL 572 (987)
Q Consensus 493 ~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l 572 (987)
. +...
T Consensus 230 -------------~-------~~~~------------------------------------------------------- 234 (491)
T PRK10982 230 -------------M-------VGRS------------------------------------------------------- 234 (491)
T ss_pred -------------H-------hCCC-------------------------------------------------------
Confidence 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001980 573 GTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILF 652 (987)
Q Consensus 573 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (987)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 001980 653 GISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDD 732 (987)
Q Consensus 653 ~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~ 732 (987)
. . . .. +. +..
T Consensus 235 --------------------------~------------------------------------~---~--~~-~~--~~~ 244 (491)
T PRK10982 235 --------------------------L------------------------------------T---Q--RF-PD--KEN 244 (491)
T ss_pred --------------------------c------------------------------------c---c--cc-cc--ccC
Confidence 0 0 0 00 00 000
Q ss_pred CCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC
Q 001980 733 PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 812 (987)
Q Consensus 733 ~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~ 812 (987)
+ +.+..|+++|++++| + ++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++.
T Consensus 245 ~------~~~~~i~~~~l~~~~--~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 313 (491)
T PRK10982 245 K------PGEVILEVRNLTSLR--Q---PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN 313 (491)
T ss_pred C------CCCcEEEEeCccccc--C---cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECC
Confidence 0 001248999999975 2 4899999999999999999999999999999999999999999999999998
Q ss_pred CCCHH-HHhcccEEEccccc---ccc-ccHHHH-----hccCCC--C-CCH----HHHHHHHHHcCchhhHhhCCCcCCC
Q 001980 813 RLNLK-SLRLKIGLVQQEPA---LFA-ASIFDN-----IAYGKE--G-ATE----AEVVEAARAANVHGFVSALPNAYKT 875 (987)
Q Consensus 813 ~i~l~-~lR~~i~~VpQdp~---lF~-gTIreN-----L~~~~~--~-~sd----~ei~~al~~a~l~~~i~~lp~gldt 875 (987)
..+.. .+|+.++|+||++. +|. .|+.+| +..... . .+. +++.+.++..++. .+..+.
T Consensus 314 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~ 387 (491)
T PRK10982 314 NHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK------TPGHRT 387 (491)
T ss_pred CCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCcc------CCCccc
Confidence 77654 45788999999963 554 466666 432111 1 111 2233333333331 112344
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEE
Q 001980 876 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGV 953 (987)
Q Consensus 876 ~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iiv 953 (987)
++ ..||||||||++||||++++|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. |||+++
T Consensus 388 ~~----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~ 463 (491)
T PRK10982 388 QI----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILV 463 (491)
T ss_pred cc----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEE
Confidence 44 4699999999999999999999999999999999999999999998864 58999999999998865 799999
Q ss_pred EeCCEEEEecChhHH
Q 001980 954 VQDGRIVEQGSHSEL 968 (987)
Q Consensus 954 l~~G~ive~Gt~~eL 968 (987)
|++|+++..++++++
T Consensus 464 l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 464 MSNGLVAGIVDTKTT 478 (491)
T ss_pred EECCEEEEEEccccC
Confidence 999999988877544
No 50
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.8e-71 Score=602.89 Aligned_cols=492 Identities=26% Similarity=0.349 Sum_probs=443.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001980 469 YIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQ 548 (987)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~ 548 (987)
.+++.++..++..++.++..+++.+...+++.++|...+++|..-- ..|+=. .--+|.++++.++...-+..+.
T Consensus 69 al~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~-----~~g~~~-Q~LrDL~qvR~Fltg~g~~A~f 142 (580)
T COG4618 69 ALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRR-----GSGDGL-QPLRDLDQVRQFLTGTGLTAFF 142 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhc-----CCCccc-cchhhHHHHHHHHcCCCcchhc
Confidence 3344556677888999999999999999999999999987766422 222211 2247999999999998888888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHH
Q 001980 549 NMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILS 628 (987)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~ 628 (987)
...++-+.++++|.++++++++.++...+++.+.++..+..++-.++..+.......+...+..+.++|++.|+.....+
T Consensus 143 DaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~ 222 (580)
T COG4618 143 DAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAK 222 (580)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHH
Confidence 88889999999999999999999999988888888888888887788888888888999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 629 LFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEI 708 (987)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (987)
+|.+....+.....+.+-..+.+..++..+-.+....++..|.+|+..|++|.|.+++..........|+...+..|.++
T Consensus 223 rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~ 302 (580)
T COG4618 223 RWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQF 302 (580)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHH
Confidence 99998888888777777777888888889999999999999999999999999999988888888889999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHH
Q 001980 709 IRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSS 788 (987)
Q Consensus 709 ~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKST 788 (987)
..+..+..|+.+.+...+...+ .-+.|..+|.+.++++++.-|+. ++|+|+|+||.++|||-+||+|||||||||
T Consensus 303 ~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKST 377 (580)
T COG4618 303 VAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKST 377 (580)
T ss_pred HHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHH
Confidence 9999999999999987654332 23344557899999999977655 568999999999999999999999999999
Q ss_pred HHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhh
Q 001980 789 VIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSA 868 (987)
Q Consensus 789 L~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~ 868 (987)
|.++|.|.+.|.+|.|.+||-|+++++.+.+-++|||.|||..||+|||+|||+-+.++.+++.+.+|++.++.||.|.+
T Consensus 378 LaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~ 457 (580)
T COG4618 378 LARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILR 457 (580)
T ss_pred HHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999977788999999999999999999999
Q ss_pred CCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc
Q 001980 869 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG 947 (987)
Q Consensus 869 lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~ 947 (987)
+|+||||.||++|..|||||||||+|||||+.+|++++||||.||||.+-|+.+.++|.+.. +|+|+|+||||++.+..
T Consensus 458 lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~ 537 (580)
T COG4618 458 LPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS 537 (580)
T ss_pred CcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999876 79999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhHHhcC
Q 001980 948 VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 948 ~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
+|+|+||++|++..+|+-+|.+++
T Consensus 538 ~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 538 VDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999998865
No 51
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.5e-70 Score=700.45 Aligned_cols=220 Identities=26% Similarity=0.408 Sum_probs=188.7
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..|+++|+++.|++. +..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 369999999999632 2459999999999999999999999999999999999999999999999999864 45567889
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|||||++.+++. ||+|||.++... ...++..+ .+.+.++.+ |+.........+||||||||++|||||+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999876 999999875221 11111111 123344444 6666677888899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|+|+||||||++||+.+++.+++.|+++++|+|||++||+++++.. ||||++|++|++++.|+.+++.++
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999998779999999999999976 899999999999999999998764
No 52
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-73 Score=646.70 Aligned_cols=335 Identities=49% Similarity=0.766 Sum_probs=317.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 001980 3 KGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPS 82 (987)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~ 82 (987)
.+..++.+.++.++..+.++|||++++..|.+|.|.+.+++++......++..+...++.+.++..|.+|++|+++.+|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 45567778888889999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 001980 83 IIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 162 (987)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~ 162 (987)
.+.+ ....+....+.|+|+||+|+||.+++.++|+|+||+|+|||.||+||||||||||++++|.++|+|++|+|.+|
T Consensus 451 i~~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllD 528 (716)
T KOG0058|consen 451 IPLT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLD 528 (716)
T ss_pred CCCC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEEC
Confidence 6543 22222356788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChH
Q 001980 163 NVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG 242 (987)
Q Consensus 163 g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgG 242 (987)
|+|++++++.++|++||+|.|||.||++||+|||.||.++.+++++..+++.+++++||..+|+||+|.+||+|..||||
T Consensus 529 G~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGG 608 (716)
T KOG0058|consen 529 GVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGG 608 (716)
T ss_pred CeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHH
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEE 322 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 322 (987)
|||||||||||++||.||||||+|||||++++..++++|.+..+++|||+|+||++++++||+|+|+++|+++|.|+|+|
T Consensus 609 QKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~e 688 (716)
T KOG0058|consen 609 QKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDE 688 (716)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-hhHHHHHHHHHh
Q 001980 323 LIAKA-GAYASLIRFQEM 339 (987)
Q Consensus 323 l~~~~-~~~~~~~~~~~~ 339 (987)
|+++. +.|.++.+.|..
T Consensus 689 Ll~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 689 LLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred HhhCcccHHHHHHHHhcc
Confidence 99988 799999876643
No 53
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.6e-72 Score=662.91 Aligned_cols=452 Identities=23% Similarity=0.293 Sum_probs=345.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++. .+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSDT---KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCCe---eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 38999999999743 489999999999999999999999999999999999999999999999888766666667789
Q ss_pred EEEcCCCCC--c-------hhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 179 GLVNQEPAL--F-------ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 179 ~~v~Q~~~l--~-------~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
+|++|++.+ + ..|++||+.++. ...+++.+ .++.+ |+.........+||||||||++|
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQ---------LAQQF--GITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch--hHHHHHHH---------HHHHc--CCHhhhhCCcccCCHHHHHHHHH
Confidence 999998753 1 348888886531 11122222 33333 55445566778999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
||||+.+|++|||||||++||+.+++.+.+.|.++. +|+|+|++||+++.+.. ||+|++|++|+++..|+.+++....
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 226 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA 226 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch
Confidence 999999999999999999999999999999999885 47899999999998876 8999999999999988766653210
Q ss_pred hhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchH
Q 001980 328 GAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGY 407 (987)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (987)
. ...+.. . .
T Consensus 227 ~-~~~~~~-----------------~------~----------------------------------------------- 235 (490)
T PRK10938 227 L-VAQLAH-----------------S------E----------------------------------------------- 235 (490)
T ss_pred h-hhhhhh-----------------h------h-----------------------------------------------
Confidence 0 000000 0 0
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
T Consensus 236 -------------------------------------------------------------------------------- 235 (490)
T PRK10938 236 -------------------------------------------------------------------------------- 235 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
.+ ... +.+.
T Consensus 236 ----------------------~~--~~~-~~~~---------------------------------------------- 244 (490)
T PRK10938 236 ----------------------QL--EGV-QLPE---------------------------------------------- 244 (490)
T ss_pred ----------------------cc--Ccc-ccCc----------------------------------------------
Confidence 00 000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
T Consensus 245 -------------------------------------------------------------------------------- 244 (490)
T PRK10938 245 -------------------------------------------------------------------------------- 244 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR 727 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 727 (987)
... +.
T Consensus 245 --------------------------------------------------------------------------~~~-~~ 249 (490)
T PRK10938 245 --------------------------------------------------------------------------PDE-PS 249 (490)
T ss_pred --------------------------------------------------------------------------ccc-cc
Confidence 000 00
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-CCceEEE
Q 001980 728 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-TAGKVMI 806 (987)
Q Consensus 728 ~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-~~G~I~i 806 (987)
. +.... .....|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+
T Consensus 250 ~-~~~~~-----~~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~ 320 (490)
T PRK10938 250 A-RHALP-----ANEPRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTL 320 (490)
T ss_pred c-ccccC-----CCCceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEE
Confidence 0 00000 01124999999999953 3589999999999999999999999999999999998875 6999999
Q ss_pred CCccCCC-CCHHHHhcccEEEcccccccc---ccHHHHhccCCC-------CCC---HHHHHHHHHHcCchh-hHhhCCC
Q 001980 807 DGKDIRR-LNLKSLRLKIGLVQQEPALFA---ASIFDNIAYGKE-------GAT---EAEVVEAARAANVHG-FVSALPN 871 (987)
Q Consensus 807 dG~di~~-i~l~~lR~~i~~VpQdp~lF~---gTIreNL~~~~~-------~~s---d~ei~~al~~a~l~~-~i~~lp~ 871 (987)
+|.++.. .+...+|++++|+||++.++. .|+++++..+.. ... ++++.++++..++.+ .
T Consensus 321 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 394 (490)
T PRK10938 321 FGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRT------ 394 (490)
T ss_pred ecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhh------
Confidence 9987642 234457889999999987642 467777643211 111 234566666666643 2
Q ss_pred cCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-CeEEEEecCchhhhc--
Q 001980 872 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-G-RTTVLVAHRLSTIRG-- 947 (987)
Q Consensus 872 gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~-~TvI~IaHRl~ti~~-- 947 (987)
.+.++ ..||||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ + .|||+|||+++.+..
T Consensus 395 -~~~~~----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~ 469 (490)
T PRK10938 395 -ADAPF----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACI 469 (490)
T ss_pred -ccCch----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhh
Confidence 22333 46999999999999999999999999999999999999999999998753 4 479999999999975
Q ss_pred cCEEEEEeCCEEEEec
Q 001980 948 VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 948 ~D~Iivl~~G~ive~G 963 (987)
||++++|++|+|++.-
T Consensus 470 ~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 470 THRLEFVPDGDIYRYV 485 (490)
T ss_pred heeEEEecCCceEEee
Confidence 6999999999998763
No 54
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.8e-70 Score=706.85 Aligned_cols=213 Identities=24% Similarity=0.429 Sum_probs=182.5
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC---CCCceEEECCccCCCCCHHHH
Q 001980 744 EIELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD---PTAGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~l~~l 819 (987)
.++++||+++|+.++ ++++|+|||++|+|||++||+||||||||||+++|.|+.+ |++|+|++||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999996322 3469999999999999999999999999999999999997 78899999999985 257
Q ss_pred hcccEEEccccc-cccccHHHHhccCC----C-CCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 820 RLKIGLVQQEPA-LFAASIFDNIAYGK----E-GATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 820 R~~i~~VpQdp~-lF~gTIreNL~~~~----~-~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
|++++||||++. ++..||||||.++. + +.++++ +.++++..++. +..|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHHh
Confidence 899999999875 55689999998642 1 234433 45666666654 3468899988889999999
Q ss_pred HHHHHHHHHccCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhh--hccCEEEEEeCC-EEEEecC
Q 001980 890 QRIAIARAVLKNPA-ILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTI--RGVDCIGVVQDG-RIVEQGS 964 (987)
Q Consensus 890 QrlaLARAllr~p~-ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti--~~~D~Iivl~~G-~ive~Gt 964 (987)
||++|||||+++|+ ||+||||||+||+.+...|++.|++.. +|+|||+++|+++.. ..+|+|++|++| +++++|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999874 689999999999974 578999999997 9999998
Q ss_pred hhH
Q 001980 965 HSE 967 (987)
Q Consensus 965 ~~e 967 (987)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 743
No 55
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-70 Score=653.95 Aligned_cols=480 Identities=24% Similarity=0.389 Sum_probs=345.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. .+|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999974 35899999999999999999999999999999999999999999999872 3699
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCCC----------------CHH---HHHHH----------HHHHhHHHHHHhCCCCCc
Q 001980 180 LVNQEPALFAT-TILENILYGKPEA----------------TMA---EVEAA----------ASAANAHSFITLLPNGYS 229 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~~----------------~~~---~~~~~----------~~~~~~~~~~~~~~~g~~ 229 (987)
|++|++.+++. |++||+.++.... ... .+.+. .....+.+.++.+ |+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988765 9999998753100 000 00000 0011223445555 554
Q ss_pred ccc-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEE
Q 001980 230 TQV-GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVA 307 (987)
Q Consensus 230 t~~-~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~ 307 (987)
... .....+||||||||++|||||+.+|++|||||||++||+.+++++.+.|.+ .+.|||+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 332 345789999999999999999999999999999999999999999999975 47899999999999876 89999
Q ss_pred EEeCCEE-EEecChHHHHHhhhh-HHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCC
Q 001980 308 VIQQGQV-VETGTHEELIAKAGA-YASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGA 385 (987)
Q Consensus 308 ~l~~G~i-~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (987)
+|++|++ ++.|+++++++.... +.......... ..
T Consensus 224 ~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~------------------~~------------------------- 260 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMTAATQARERLLADNAKK------------------KA------------------------- 260 (530)
T ss_pred EEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHH------------------HH-------------------------
Confidence 9999999 478988887542110 00000000000 00
Q ss_pred CcccccccccccccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHH
Q 001980 386 DGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEF 465 (987)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
. ...
T Consensus 261 --------~-------------~~~------------------------------------------------------- 264 (530)
T PRK15064 261 --------Q-------------IAE------------------------------------------------------- 264 (530)
T ss_pred --------H-------------HHH-------------------------------------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHH
Q 001980 466 VFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISV 545 (987)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~ 545 (987)
++. ... + .. ...
T Consensus 265 --------------------------------~~~-~~~---~-----~~---~~~------------------------ 276 (530)
T PRK15064 265 --------------------------------LQS-FVS---R-----FS---ANA------------------------ 276 (530)
T ss_pred --------------------------------HHH-HHH---H-----hh---ccc------------------------
Confidence 000 000 0 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHH
Q 001980 546 ILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNK 625 (987)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~ 625 (987)
...
T Consensus 277 ------------------------------------------------~~~----------------------------- 279 (530)
T PRK15064 277 ------------------------------------------------SKA----------------------------- 279 (530)
T ss_pred ------------------------------------------------hhh-----------------------------
Confidence 000
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 626 ILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLA 705 (987)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (987)
.....
T Consensus 280 ---------~~~~~------------------------------------------------------------------ 284 (530)
T PRK15064 280 ---------KQATS------------------------------------------------------------------ 284 (530)
T ss_pred ---------HHHHH------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHH-h-cccCCCCCCCC-C-CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcC
Q 001980 706 PEIIRGGESVGSVFST-L-DRSTRIDPDDP-D-AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGA 781 (987)
Q Consensus 706 ~~~~~~~~s~~ri~~~-~-~~~~~~~~~~~-~-~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~ 781 (987)
...++.+. . ........... . .......+..|+++|++++|++ .++|+|+||+|++||++||+|+
T Consensus 285 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~ 353 (530)
T PRK15064 285 --------RAKQIDKIKLEEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGE 353 (530)
T ss_pred --------HHHHHhhccccccCCccccCceeeCCCCCCCCCceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECC
Confidence 00000000 0 00000000000 0 0000011236999999999953 3599999999999999999999
Q ss_pred CCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccc--cc-cccHHHHhccCC-CCCCHHHHHHHH
Q 001980 782 SGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPA--LF-AASIFDNIAYGK-EGATEAEVVEAA 857 (987)
Q Consensus 782 sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~--lF-~gTIreNL~~~~-~~~sd~ei~~al 857 (987)
||||||||+++|.|+++|++|+|.++| +++++|+||++. ++ ..|+++|+.... ....++++.+++
T Consensus 354 NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l 422 (530)
T PRK15064 354 NGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTL 422 (530)
T ss_pred CCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHH
Confidence 999999999999999999999999998 367999999984 44 369999986432 223455677788
Q ss_pred HHcCch-hhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEE
Q 001980 858 RAANVH-GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTV 936 (987)
Q Consensus 858 ~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI 936 (987)
+..++. +.. +.++ ..||||||||++||||++++|+||||||||++||+.+...+.+.|++. +.|||
T Consensus 423 ~~~~l~~~~~-------~~~~----~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi 489 (530)
T PRK15064 423 GRLLFSQDDI-------KKSV----KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLI 489 (530)
T ss_pred HHcCCChhHh-------cCcc----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEE
Confidence 887763 222 2333 469999999999999999999999999999999999999999999886 46999
Q ss_pred EEecCchhhhc-cCEEEEEeCCEEE-EecChhHHhcC
Q 001980 937 LVAHRLSTIRG-VDCIGVVQDGRIV-EQGSHSELVSR 971 (987)
Q Consensus 937 ~IaHRl~ti~~-~D~Iivl~~G~iv-e~Gt~~eLl~~ 971 (987)
+|||+++.+.. ||+|++|++|+++ ..|+++++++.
T Consensus 490 ~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 490 FVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred EEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999876 8999999999998 78999988765
No 56
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.7e-69 Score=642.34 Aligned_cols=482 Identities=22% Similarity=0.331 Sum_probs=339.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 5899999999972 23589999999999999999999999999999999999999999999975 2469
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCC----------------CH----------HHHHHHHH-------HHhHHHHHHhC
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEA----------------TM----------AEVEAAAS-------AANAHSFITLL 224 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~----------------~~----------~~~~~~~~-------~~~~~~~~~~~ 224 (987)
+||+|+|.+++. |++||+.++.... .. .++.+.+. ...+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999876 9999998752100 00 00001110 11122334444
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-C
Q 001980 225 PNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-V 303 (987)
Q Consensus 225 ~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~ 303 (987)
|+. .......+||||||||++|||||+.+|++|||||||++||+.+..++.+.|+++. .|+|+|||+++++.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 443 2466778999999999999999999999999999999999999999999998873 599999999999876 7
Q ss_pred CEEEEEeCCEEE-EecChHHHHHhhhhHHHHHHHHHhhhccccCCCCccccccccccccccccccccccccccccccccc
Q 001980 304 DTVAVIQQGQVV-ETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYS 382 (987)
Q Consensus 304 d~i~~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (987)
|+|++|++|+++ ..|+++++.+....... ..... .
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~---~~~~~-------------------~---------------------- 263 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLEQKAKRLA---QEEKQ-------------------E---------------------- 263 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHHHHHHHHH---HHHHH-------------------H----------------------
Confidence 999999999986 78888876543110000 00000 0
Q ss_pred CCCCcccccccccccccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhh
Q 001980 383 TGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKT 462 (987)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (987)
.. ...
T Consensus 264 ----------~~-------------~~~---------------------------------------------------- 268 (556)
T PRK11819 264 ----------AA-------------RQK---------------------------------------------------- 268 (556)
T ss_pred ----------HH-------------HHH----------------------------------------------------
Confidence 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHH
Q 001980 463 KEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADR 542 (987)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~ 542 (987)
.++ ++.. |.+. .+.+
T Consensus 269 ----------------------------------~~~-~~~~--------~~~~--~~~~-------------------- 283 (556)
T PRK11819 269 ----------------------------------ALK-RELE--------WVRQ--SPKA-------------------- 283 (556)
T ss_pred ----------------------------------HHH-HHHH--------HHHH--hhhh--------------------
Confidence 000 0000 0000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhcc
Q 001980 543 ISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNA 622 (987)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~ 622 (987)
+. . ..
T Consensus 284 -----------------------------------------------~~-~-~~-------------------------- 288 (556)
T PRK11819 284 -----------------------------------------------RQ-A-KS-------------------------- 288 (556)
T ss_pred -----------------------------------------------hH-H-HH--------------------------
Confidence 00 0 00
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001980 623 QNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETV 702 (987)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (987)
+ ...
T Consensus 289 ~-~~~--------------------------------------------------------------------------- 292 (556)
T PRK11819 289 K-ARL--------------------------------------------------------------------------- 292 (556)
T ss_pred H-HHH---------------------------------------------------------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCC-CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEc
Q 001980 703 SLAPEIIRGGESVGSVFSTLDRSTRIDP-DDPD-AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVG 780 (987)
Q Consensus 703 ~~~~~~~~~~~s~~ri~~~~~~~~~~~~-~~~~-~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG 780 (987)
...++..+. .+...+. .... .......+..|+++||+++|++ .++|+|+||+|++||++||+|
T Consensus 293 ----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G 357 (556)
T PRK11819 293 ----------ARYEELLSE--EYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIG 357 (556)
T ss_pred ----------HHHHHhhcc--cccccCCCceeecCCCCCCCCeEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEEC
Confidence 000000000 0000000 0000 0000011235999999999953 359999999999999999999
Q ss_pred CCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEcccc-cccc-ccHHHHhccCCCC----CCHHHHH
Q 001980 781 ASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP-ALFA-ASIFDNIAYGKEG----ATEAEVV 854 (987)
Q Consensus 781 ~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp-~lF~-gTIreNL~~~~~~----~sd~ei~ 854 (987)
+||||||||+++|.|+++|++|+|.+++ + .+|+|+||++ .++. -|+++|+.++... ..+.+..
T Consensus 358 ~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 426 (556)
T PRK11819 358 PNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR 426 (556)
T ss_pred CCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHH
Confidence 9999999999999999999999999964 2 1699999997 5554 5999999765321 1233444
Q ss_pred HHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCe
Q 001980 855 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 934 (987)
Q Consensus 855 ~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~T 934 (987)
++++..++.+. ..+.++ ..||||||||++||||++.+|++|||||||++||+.+...+.+.|++. + .|
T Consensus 427 ~~l~~~~l~~~------~~~~~~----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~t 494 (556)
T PRK11819 427 AYVGRFNFKGG------DQQKKV----GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GC 494 (556)
T ss_pred HHHHhCCCChh------HhcCch----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-Ce
Confidence 55665555321 123333 469999999999999999999999999999999999999999999986 3 49
Q ss_pred EEEEecCchhhhc-cCEEEEEeC-CEEEE-ecChhHHhcC
Q 001980 935 TVLVAHRLSTIRG-VDCIGVVQD-GRIVE-QGSHSELVSR 971 (987)
Q Consensus 935 vI~IaHRl~ti~~-~D~Iivl~~-G~ive-~Gt~~eLl~~ 971 (987)
||+|||+++.+.. ||+|++|++ |++.+ .|+++++++.
T Consensus 495 vi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 495 AVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999998865 899999986 88874 6888877654
No 57
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3e-67 Score=684.29 Aligned_cols=471 Identities=21% Similarity=0.286 Sum_probs=381.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
.+.+.+....++..+|+++++.|..+|+. ..+|+++|++++|++.++..+ ..+..++...+.+++++++++ +.+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~--~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~l 439 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKN--FASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQL 439 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC--CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 56777888888889999999999998874 689999999999999999986 455555544444444433322 223
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHH
Q 001980 568 SLLILGTYPLLV---LANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRR 644 (987)
Q Consensus 568 ~l~~l~~~pl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 644 (987)
++..++.+++++ .+..+..+..++..++..+...+....+.|.++|+++||+|++|+.+.+++.+..+...+...+.
T Consensus 440 g~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~ 519 (1495)
T PLN03232 440 GVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKA 519 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322222211 12333445555556666677778889999999999999999999999999988776666555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001980 645 SLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDR 724 (987)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~ 724 (987)
.....+...+.... ...+..+++|.+++..+.++++.+++++.+......++..+......+.++..+.+|+.++++.
T Consensus 520 ~~~~~~~~~~~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~ 597 (1495)
T PLN03232 520 QLLSAFNSFILNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLS 597 (1495)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44443332222111 1223346788888889999999999998888888889988888889999999999999999976
Q ss_pred cCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceE
Q 001980 725 STRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804 (987)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I 804 (987)
+++.....+ +..+..+.|+|+|++|+|+++++.++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+
T Consensus 598 ~~~~~~~~~---~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i 674 (1495)
T PLN03232 598 EERILAQNP---PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674 (1495)
T ss_pred ccccccccC---CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE
Confidence 543211111 11122357999999999976444679999999999999999999999999999999999999999876
Q ss_pred EECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 805 ~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
. .+|++|+||||+|.+|+|||||||.+|.+ +++++++++++.|++.++++.+|+|++|+|||+|.+|
T Consensus 675 ~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~L 741 (1495)
T PLN03232 675 V------------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNI 741 (1495)
T ss_pred E------------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCccc
Confidence 3 46889999999999999999999999875 7999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEec
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA-LERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~-l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~G 963 (987)
|||||||||||||++++|+|+||||||||||+++++.|.+. ++...+++|+|+||||++++..||+|++|++|+|+|.|
T Consensus 742 SGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEG 821 (1495)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999988654 66666899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHhh
Q 001980 964 SHSELVSRPDGAYSRLLQLQ 983 (987)
Q Consensus 964 t~~eLl~~~~g~f~~l~~~q 983 (987)
+|++|+++ ++.|+++++.+
T Consensus 822 t~~eL~~~-~~~~~~l~~~~ 840 (1495)
T PLN03232 822 TFAELSKS-GSLFKKLMENA 840 (1495)
T ss_pred CHHHHHhc-chhHHHHHHhc
Confidence 99999986 78999998755
No 58
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=4.7e-67 Score=626.55 Aligned_cols=473 Identities=18% Similarity=0.232 Sum_probs=376.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 476 AVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLT 555 (987)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~ 555 (987)
..++.++..++..+.+.+...++|.++++++++.|++||+. +++|++++|+++|++.+...+. .++.++..++.+++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~--~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~ 137 (547)
T PRK10522 61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQ--LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLG 137 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc--cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999985 7899999999999999998765 57778888888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccH---HHHHHHHHH
Q 001980 556 SFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ---NKILSLFCH 632 (987)
Q Consensus 556 ~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~---~~~~~~~~~ 632 (987)
+++++++++|.+++++++++|+.+++.+...++.++..++.++..++....+.|.++|+++++ ++.+ +.+.+++.+
T Consensus 138 ~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~ 216 (547)
T PRK10522 138 SAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEP 216 (547)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhH
Confidence 999999999999999999998888777766666666677777788899999999999999995 4443 456777877
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 633 ELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGG 712 (987)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (987)
..+...+...+..........+.........++.++++..+ +..+.+.+..+..+......++..+......+....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 217 DAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655555444333332222222222222223333221 112333333333333345578888999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHH
Q 001980 713 ESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL 792 (987)
Q Consensus 713 ~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~l 792 (987)
.+.+|+.++.+.+.+.+.. ...+ .+..+.|+|+||+|+|+++ .++|+|+||+|+|||++||||+||||||||+++
T Consensus 294 ~a~~ri~~l~~~~~~~~~~--~~~~-~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~l 368 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEFP--RPQA-FPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAML 368 (547)
T ss_pred HHHHHHHHHhccccccccc--cccc-cCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 9999999986543221111 1111 1123579999999999743 369999999999999999999999999999999
Q ss_pred HhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCc
Q 001980 793 IERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA 872 (987)
Q Consensus 793 L~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~g 872 (987)
|+|+|+|++|+|++||+|+++++.+++|++++||||||++|++|+++| + ++.++++++++++.+++.+++. .++|
T Consensus 369 l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~ 443 (547)
T PRK10522 369 LTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDG 443 (547)
T ss_pred HhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-cccc
Confidence 999999999999999999999999999999999999999999999999 2 4578889999999998887665 3444
Q ss_pred CCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCE
Q 001980 873 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDC 950 (987)
Q Consensus 873 ldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~ 950 (987)
. .+|.+||||||||++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||++++..||+
T Consensus 444 ~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~ 518 (547)
T PRK10522 444 R-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADR 518 (547)
T ss_pred C-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCE
Confidence 2 2478999999999999999999999999999999999999999999998654 48999999999999999999
Q ss_pred EEEEeCCEEEEe-cChhHHhc
Q 001980 951 IGVVQDGRIVEQ-GSHSELVS 970 (987)
Q Consensus 951 Iivl~~G~ive~-Gt~~eLl~ 970 (987)
|++|++|+++|. |++.+-..
T Consensus 519 i~~l~~G~i~e~~~~~~~~~~ 539 (547)
T PRK10522 519 LLEMRNGQLSELTGEERDAAS 539 (547)
T ss_pred EEEEECCEEEEecCCchhhhh
Confidence 999999999987 55555443
No 59
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6e-67 Score=680.51 Aligned_cols=538 Identities=20% Similarity=0.240 Sum_probs=402.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 420 PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVR 499 (987)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 499 (987)
+.+++++++.++..++....++++..+++.+...+.. .....++.++++..++..++..-..+.....+.++...++
T Consensus 301 ~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~ 377 (1622)
T PLN03130 301 GRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA---WIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLV 377 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555556666666777666544322110 0001111111111111111111111123467777888888
Q ss_pred HHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001980 500 RMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLV 579 (987)
Q Consensus 500 ~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~ 579 (987)
..+|+++++.|..++.. ...|+++|++++|++.++..+ ..+..++...+.+++++++++..-...+++.++++.+++
T Consensus 378 ~~i~~k~L~l~~~~~~~--~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~ 454 (1622)
T PLN03130 378 AAVFRKSLRLTHEGRKK--FTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMF 454 (1622)
T ss_pred HHHHHHHhcCChhhcCC--CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999864 789999999999999999987 445555555555555544443321111222222222222
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 580 LANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFAL 659 (987)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (987)
.+..+..+++++..++......+....+.|.++|+++||.|++|+.+.+++.+..+...+...+......+...+.....
T Consensus 455 ~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 534 (1622)
T PLN03130 455 PIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIP 534 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233344455555566666677788999999999999999999999999887766654444333333333222222211
Q ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCC
Q 001980 660 HASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVE 739 (987)
Q Consensus 660 ~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~ 739 (987)
..+.+.++|.+++..|.++++.+++++.+......|+..+......+.++..+++|+.++++.++......+ +..
T Consensus 535 --~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~---~~~ 609 (1622)
T PLN03130 535 --VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP---PLE 609 (1622)
T ss_pred --HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCC---ccc
Confidence 134556788888889999999999888888888888888888889999999999999999875432211111 111
Q ss_pred CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC-ceEEECCccCCCCCHHH
Q 001980 740 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA-GKVMIDGKDIRRLNLKS 818 (987)
Q Consensus 740 ~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~-G~I~idG~di~~i~l~~ 818 (987)
+..+.|+|+||+|+|+++++.++|+|+||+|++||+++|||+||||||||+++|+|+++|++ |+|.+
T Consensus 610 ~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l------------ 677 (1622)
T PLN03130 610 PGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------------ 677 (1622)
T ss_pred CCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE------------
Confidence 12357999999999975444579999999999999999999999999999999999999999 99974
Q ss_pred HhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHH
Q 001980 819 LRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898 (987)
Q Consensus 819 lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAl 898 (987)
|.+|+||||+|.+|+|||||||.+|.+ +++++++++++.|+++++++.+|+|++|.|||+|.+||||||||||||||+
T Consensus 678 -~~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAl 755 (1622)
T PLN03130 678 -RGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV 755 (1622)
T ss_pred -cCeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999876 689999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001980 899 LKNPAILLLDEATSALDAESECVLQ-EALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977 (987)
Q Consensus 899 lr~p~ILlLDEaTS~LD~~te~~I~-~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~ 977 (987)
+++|+|+||||||||||+++++.|. +.++...+++|+|+||||++.+..+|+|++|++|+|+|.|+|++|+++ ++.|+
T Consensus 756 y~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~-~~~~~ 834 (1622)
T PLN03130 756 YSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN-GPLFQ 834 (1622)
T ss_pred hCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc-chhHH
Confidence 9999999999999999999998875 567767789999999999999999999999999999999999999976 78899
Q ss_pred HHHHhh
Q 001980 978 RLLQLQ 983 (987)
Q Consensus 978 ~l~~~q 983 (987)
++++.+
T Consensus 835 ~l~~~~ 840 (1622)
T PLN03130 835 KLMENA 840 (1622)
T ss_pred HHHHhc
Confidence 988654
No 60
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.3e-68 Score=635.85 Aligned_cols=482 Identities=24% Similarity=0.340 Sum_probs=337.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999972 23589999999999999999999999999999999999999999999975 2479
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC-----------------C-C--------HHHHHHHHHHHh-------HHHHHHhC
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE-----------------A-T--------MAEVEAAASAAN-------AHSFITLL 224 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~-----------------~-~--------~~~~~~~~~~~~-------~~~~~~~~ 224 (987)
+||+|+|++++. |++||+.++... . . ..++.+.++.++ +.+.+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999999865 999999875310 0 0 011222222221 22233333
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-C
Q 001980 225 PNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-V 303 (987)
Q Consensus 225 ~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~ 303 (987)
|+. .......+||||||||++|||||+.+|++|||||||++||+.+.+++.+.|.++ +.|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 443 245677899999999999999999999999999999999999999999999876 3599999999999876 7
Q ss_pred CEEEEEeCCEEE-EecChHHHHHhhhhHHHHHHHHHhhhccccCCCCccccccccccccccccccccccccccccccccc
Q 001980 304 DTVAVIQQGQVV-ETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYS 382 (987)
Q Consensus 304 d~i~~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (987)
|+|++|++|+++ ..|+++++.+....- . ..+... .
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~~~~~~--~-~~~~~~-------------------~---------------------- 261 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLEQKEKR--L-EQEEKE-------------------E---------------------- 261 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHHHHHHH--H-HHHHHH-------------------H----------------------
Confidence 999999999975 778888765421100 0 000000 0
Q ss_pred CCCCcccccccccccccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhh
Q 001980 383 TGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKT 462 (987)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (987)
..
T Consensus 262 --------------------------~~---------------------------------------------------- 263 (552)
T TIGR03719 262 --------------------------SA---------------------------------------------------- 263 (552)
T ss_pred --------------------------HH----------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHH
Q 001980 463 KEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADR 542 (987)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~ 542 (987)
....+ .+..
T Consensus 264 -----------------------------------~~~~~-----------------------~~~~------------- 272 (552)
T TIGR03719 264 -----------------------------------RQKAL-----------------------KREL------------- 272 (552)
T ss_pred -----------------------------------HHHHH-----------------------HHHH-------------
Confidence 00000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhcc
Q 001980 543 ISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNA 622 (987)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~ 622 (987)
.| .... .. .++. . .
T Consensus 273 ---------------------~~------------------~~~~--~~-~~~~-~--------------------~--- 286 (552)
T TIGR03719 273 ---------------------EW------------------VRSS--PK-ARQA-K--------------------S--- 286 (552)
T ss_pred ---------------------HH------------------HHhh--hh-hHHH-H--------------------H---
Confidence 00 0000 00 0000 0 0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001980 623 QNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETV 702 (987)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (987)
+ ....+
T Consensus 287 ~-~~~~~------------------------------------------------------------------------- 292 (552)
T TIGR03719 287 K-ARLAR------------------------------------------------------------------------- 292 (552)
T ss_pred H-HHHHH-------------------------------------------------------------------------
Confidence 0 00000
Q ss_pred HHHHHHHHHHHHHHHHHH-HhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcC
Q 001980 703 SLAPEIIRGGESVGSVFS-TLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGA 781 (987)
Q Consensus 703 ~~~~~~~~~~~s~~ri~~-~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~ 781 (987)
.++..+ .....++......+ ......+..|+++|++++|++ .++|+|+||+|++||++||+|+
T Consensus 293 ------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~ 356 (552)
T TIGR03719 293 ------------YEELLSQEFQKRNETAEIYIP-PGPRLGDKVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGP 356 (552)
T ss_pred ------------HHhhhhhcccccCCCceeecC-CCCCCCCeEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECC
Confidence 000000 00000000000000 000011225999999999953 3599999999999999999999
Q ss_pred CCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccc-ccc-ccHHHHhccCCCC--C--CHHHHHH
Q 001980 782 SGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPA-LFA-ASIFDNIAYGKEG--A--TEAEVVE 855 (987)
Q Consensus 782 sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~-lF~-gTIreNL~~~~~~--~--sd~ei~~ 855 (987)
||||||||+++|.|+.+|++|+|.+++ + .+|+|+||++. ++. .|+++|+.++... . .+.+..+
T Consensus 357 NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 425 (552)
T TIGR03719 357 NGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA 425 (552)
T ss_pred CCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHH
Confidence 999999999999999999999999964 2 16999999973 554 5999999865321 1 1233444
Q ss_pred HHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeE
Q 001980 856 AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 935 (987)
Q Consensus 856 al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~Tv 935 (987)
+++..++.+. -.+.++ ..||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. . .||
T Consensus 426 ~l~~~~l~~~------~~~~~~----~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~v 493 (552)
T TIGR03719 426 YVGRFNFKGS------DQQKKV----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCA 493 (552)
T ss_pred HHHhCCCChh------HhcCch----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeE
Confidence 5555554321 123333 469999999999999999999999999999999999999999999987 3 499
Q ss_pred EEEecCchhhhc-cCEEEEEeC-CEEEE-ecChhHHhc
Q 001980 936 VLVAHRLSTIRG-VDCIGVVQD-GRIVE-QGSHSELVS 970 (987)
Q Consensus 936 I~IaHRl~ti~~-~D~Iivl~~-G~ive-~Gt~~eLl~ 970 (987)
|+|||+++.+.. ||+|++|++ |++++ .|+++++++
T Consensus 494 iivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 494 VVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999876 899999997 68874 477776653
No 61
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-67 Score=631.18 Aligned_cols=200 Identities=26% Similarity=0.405 Sum_probs=167.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|.|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999953 35999999999999999999999999999999999999999999999741 369
Q ss_pred EEEcccc--ccc-cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 824 GLVQQEP--ALF-AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 824 ~~VpQdp--~lF-~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
+|+||++ .++ ..|+.+|+....+...++++.+.++..++.+- -.+.++ ..||||||||++||||+++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~------~~~~~~----~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD------KVTEET----RRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh------HhcCch----hhCCHHHHHHHHHHHHHhc
Confidence 9999985 233 34788887422233345566777777766321 123334 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEE-EecChhHHh
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIV-EQGSHSELV 969 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv-e~Gt~~eLl 969 (987)
+|++|||||||++||+.+...+.+.|++. . .|||+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999986 3 599999999999865 8999999999998 678888874
No 62
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.8e-67 Score=626.41 Aligned_cols=331 Identities=42% Similarity=0.638 Sum_probs=308.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001980 5 LGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSII 84 (987)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 84 (987)
....+..++..++.++++|+|+++|.+|.+|.|.++++.+.......|+..+...+..+++++.+.+|+.++++.++|.+
T Consensus 378 ~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~ 457 (709)
T COG2274 378 ILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQE 457 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 34556778888999999999999999999999999998888888889999999999999999999999999999887643
Q ss_pred CCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 001980 85 QDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV 164 (987)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~ 164 (987)
.+.. ....+...+.|+++||+|+|+.++ +++|+|+||+|++||++||||+||||||||+|+|+|+|+|++|+|++||.
T Consensus 458 ~~~~-~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~ 535 (709)
T COG2274 458 GDKT-LIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535 (709)
T ss_pred cccc-cccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 2221 123445678899999999998653 46999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 165 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 165 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
|+.++++..+|++||||+||+.||+|||+|||.++.|+.+++++.++|+.+++++++..+|.||+|.+||+|.+||||||
T Consensus 536 dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 536 DLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred eHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
||++|||||+++|+||||||||||||+++++.+.+.|.++..|+|+|+||||++.+++||||+||++|+|+++|+|+|++
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHH
Q 001980 325 AKAGAYASLIRFQ 337 (987)
Q Consensus 325 ~~~~~~~~~~~~~ 337 (987)
+.+|.|++++..|
T Consensus 696 ~~~g~y~~l~~~q 708 (709)
T COG2274 696 AQGGLYARLYQQQ 708 (709)
T ss_pred HhcChHHHHHhcc
Confidence 9999999887543
No 63
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.8e-65 Score=651.44 Aligned_cols=213 Identities=22% Similarity=0.391 Sum_probs=177.7
Q ss_pred cEEEEeEEEECCCC----------CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC--CCceEEECCccC
Q 001980 744 EIELRHVDFAYPSR----------PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP--TAGKVMIDGKDI 811 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~----------~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p--~~G~I~idG~di 811 (987)
.+.|+||++.++.. ....+|+|||++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 69999999997521 123699999999999999999999999999999999999763 689999999886
Q ss_pred CCCCHHHHhcccEEEcccccccc-ccHHHHhccCC----C-CCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCC
Q 001980 812 RRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGK----E-GATEAE----VVEAARAANVHGFVSALPNAYKTPVGERG 881 (987)
Q Consensus 812 ~~i~l~~lR~~i~~VpQdp~lF~-gTIreNL~~~~----~-~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G 881 (987)
++ ..+|+.++||+|++.++. .|++|||.++. + +.++++ +.++++..++.+. .|+.+|..+
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 53 456788999999987765 69999997642 1 223332 5567777766543 466676543
Q ss_pred -CCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchh--hhccCEEEEEeC-
Q 001980 882 -VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLST--IRGVDCIGVVQD- 956 (987)
Q Consensus 882 -~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~t--i~~~D~Iivl~~- 956 (987)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. +|+|||+++|+++. ...+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6799999999999999999999999999999999999999999999875 57999999999984 466899999996
Q ss_pred CEEEEecChh
Q 001980 957 GRIVEQGSHS 966 (987)
Q Consensus 957 G~ive~Gt~~ 966 (987)
|+++.+|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
No 64
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=9.3e-66 Score=622.61 Aligned_cols=200 Identities=28% Similarity=0.462 Sum_probs=165.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
-|+++||+++|++ .++|+|+||+|++|+++||+|+||||||||+++|.|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999953 35999999999999999999999999999999999999999999999 4332 59
Q ss_pred EEEcccc-cccc-ccHHHHhccCCCCC--C--HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 824 GLVQQEP-ALFA-ASIFDNIAYGKEGA--T--EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 824 ~~VpQdp-~lF~-gTIreNL~~~~~~~--s--d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
+|++|++ .++. .|+.+|+.++.+.. . +.++.+.++..++.+ +..+.+++ .||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~----~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------KRAMTPVK----ALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------HHHhChhh----hCCHHHHHHHHHHHH
Confidence 9999986 3554 49999998653321 1 334555555555421 12344443 699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEe-CCEEEEe-cChhHHh
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQ-DGRIVEQ-GSHSELV 969 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~-~G~ive~-Gt~~eLl 969 (987)
|+++|++|||||||++||+.+...+.+.|++. +.|||+|||+++.+.. ||+|++|+ +|+|+++ |++++.+
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 99999999999999999999999999999876 5699999999998865 89999998 8999875 6777664
No 65
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.9e-65 Score=617.99 Aligned_cols=199 Identities=29% Similarity=0.454 Sum_probs=165.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ +.+|
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 59999999999532 3589999999999999999999999999999999999999999999976 3579
Q ss_pred EEEccccccccccHHHHhcc----CCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 824 GLVQQEPALFAASIFDNIAY----GKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 824 ~~VpQdp~lF~gTIreNL~~----~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
+|+||++. ...++.+|... ..+..+++++.++++..++.+.. .+. ....||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~------~~~----~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL------ALQ----PMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH------hcC----CccccCHHHHHHHHHHHHHh
Confidence 99999973 22345555321 12345677888888888875321 122 23479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEE-EecChhHH
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIV-EQGSHSEL 968 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv-e~Gt~~eL 968 (987)
++|++|||||||++||+.+...+.+.+.+. + .|||+|||+++.+.. ||+|++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999999875 3 599999999999876 8999999999998 56777664
No 66
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-65 Score=575.15 Aligned_cols=457 Identities=24% Similarity=0.414 Sum_probs=357.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-HHhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR-WLRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ 177 (987)
-++++|++++|++ +++|+++||++.+||++|++|+||||||||+|+|+|.|+|++|+|.++|+++...++. .....
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999984 4699999999999999999999999999999999999999999999999999887775 45567
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCCC------HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEAT------MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
|+.|+|+..|++. ||.|||.+|.+... ..++.+.+ .+.++.+ |.+........+||+||||-|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A-----~~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRA-----RELLARL--GLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHH-----HHHHHHc--CCCCChhhhhhhCCHHHHHHHHHH
Confidence 9999999999976 99999999976432 23333222 2334444 332225666678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecCh-HHHHHhh
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTH-EELIAKA 327 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~-~~l~~~~ 327 (987)
|||..+++|+|||||||+|+....+.+++.+++++ +|.++|+|||+++++.. ||||.||+||+.+..++. .++-.
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~-- 235 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE-- 235 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH--
Confidence 99999999999999999999999999999999997 69999999999999876 899999999998865431 11000
Q ss_pred hhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchH
Q 001980 328 GAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGY 407 (987)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (987)
+
T Consensus 236 ------------------------------------------------------------------~------------- 236 (500)
T COG1129 236 ------------------------------------------------------------------D------------- 236 (500)
T ss_pred ------------------------------------------------------------------H-------------
Confidence 0
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
. ++..+.
T Consensus 237 --~-----------------------------------lv~~Mv------------------------------------ 243 (500)
T COG1129 237 --E-----------------------------------LVRLMV------------------------------------ 243 (500)
T ss_pred --H-----------------------------------HHHHhh------------------------------------
Confidence 0 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
|
T Consensus 244 ----------------------------------G--------------------------------------------- 244 (500)
T COG1129 244 ----------------------------------G--------------------------------------------- 244 (500)
T ss_pred ----------------------------------C---------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
T Consensus 245 -------------------------------------------------------------------------------- 244 (500)
T COG1129 245 -------------------------------------------------------------------------------- 244 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR 727 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 727 (987)
| +.-+..+.
T Consensus 245 ---------------------------------------------------------------------r--~~~~~~~~ 253 (500)
T COG1129 245 ---------------------------------------------------------------------R--ELEDLFPE 253 (500)
T ss_pred ---------------------------------------------------------------------c--chhhhccc
Confidence 0 00000000
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 728 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 728 ~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
.+ .+ .+..-.++++|++..- .++|+||++++||.+||.|--|||+|-++.+|+|..++.+|+|.+|
T Consensus 254 -~~-~~-----~~~~~~l~v~~l~~~~-------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~ 319 (500)
T COG1129 254 -PP-EE-----GIGEPVLEVRNLSGGG-------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLD 319 (500)
T ss_pred -cc-cc-----CCCCcEEEEecCCCCC-------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEEC
Confidence 00 00 0011136788876421 4899999999999999999999999999999999999999999999
Q ss_pred CccCCCCC-HHHHhcccEEEccccc----cccccHHHHhccCC-CCCCHH-HHHHHHHHcCchhhHhhCC---CcCCCcc
Q 001980 808 GKDIRRLN-LKSLRLKIGLVQQEPA----LFAASIFDNIAYGK-EGATEA-EVVEAARAANVHGFVSALP---NAYKTPV 877 (987)
Q Consensus 808 G~di~~i~-l~~lR~~i~~VpQdp~----lF~gTIreNL~~~~-~~~sd~-ei~~al~~a~l~~~i~~lp---~gldt~v 877 (987)
|.++.--+ .+..+..|+|||-|.- +...||++|+.++. ...+.. -+....++....+++..|. ...+.++
T Consensus 320 G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v 399 (500)
T COG1129 320 GKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI 399 (500)
T ss_pred CEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh
Confidence 99887666 4478999999999874 45779999998762 111111 2333444455556666552 2344555
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEe
Q 001980 878 GERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQ 955 (987)
Q Consensus 878 ge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~ 955 (987)
+ +||||.+|+++|||+|..+|+||||||||.++|..+.+.|.+.|+++. +|.+||+||-.+..+. .||||+||.
T Consensus 400 ~----~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~ 475 (500)
T COG1129 400 G----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMR 475 (500)
T ss_pred h----cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEE
Confidence 4 699999999999999999999999999999999999999999999986 6899999999999886 699999999
Q ss_pred CCEEEEecChhH
Q 001980 956 DGRIVEQGSHSE 967 (987)
Q Consensus 956 ~G~ive~Gt~~e 967 (987)
+|+|+..=+.++
T Consensus 476 ~Gri~~e~~~~~ 487 (500)
T COG1129 476 EGRIVGELDREE 487 (500)
T ss_pred CCEEEEEecccc
Confidence 999997544433
No 67
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.2e-64 Score=583.92 Aligned_cols=485 Identities=27% Similarity=0.394 Sum_probs=351.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|.++|++++|++ .++|+|+||++.+|+++||||+||||||||||+|+|...|++|+|...+. -+|
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 4889999999974 45999999999999999999999999999999999999999999998751 269
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCCC--HHHHHHHHH-------------------------HHhHHHHHHhCCCCCcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEAT--MAEVEAAAS-------------------------AANAHSFITLLPNGYST 230 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~~--~~~~~~~~~-------------------------~~~~~~~~~~~~~g~~t 230 (987)
+|++|++.+.+. ||.+.+..+..... ..++..+.. .+.+...+..+ |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999866 99999987753211 011111100 01222233333 4444
Q ss_pred cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEE
Q 001980 231 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVI 309 (987)
Q Consensus 231 ~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l 309 (987)
. .....+||||||.|++|||||+.+||+|||||||++||..+..++.+.|.++. | |+|+||||.+++.. |++|+.+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhheEEe
Confidence 4 56677899999999999999999999999999999999999999999998764 5 99999999999998 7999999
Q ss_pred eCCEE-EEecChHHHHHhhhhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcc
Q 001980 310 QQGQV-VETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGR 388 (987)
Q Consensus 310 ~~G~i-~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (987)
+.|++ .+.|+++...+............... . .
T Consensus 224 d~g~l~~y~Gny~~~~~~r~~~~~~~~~~~~~------------~---------------------~------------- 257 (530)
T COG0488 224 DRGKLTPYKGNYSSYLEQKAERLRQEAAAYEK------------Q---------------------Q------------- 257 (530)
T ss_pred cCCceeEecCCHHHHHHHHHHHHHHHHHHHHH------------H---------------------H-------------
Confidence 99987 56777776554321110000000000 0 0
Q ss_pred cccccccccccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHH
Q 001980 389 IEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFI 468 (987)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (987)
....+. ..|+
T Consensus 258 -----------------~~~~~~--------------------------------~~~i--------------------- 267 (530)
T COG0488 258 -----------------KELAKE--------------------------------QEWI--------------------- 267 (530)
T ss_pred -----------------HHHHHH--------------------------------HHHH---------------------
Confidence 000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001980 469 YIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQ 548 (987)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~ 548 (987)
+|+
T Consensus 268 ---------------------------------------------------------~r~-------------------- 270 (530)
T COG0488 268 ---------------------------------------------------------RRG-------------------- 270 (530)
T ss_pred ---------------------------------------------------------HHH--------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHH
Q 001980 549 NMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILS 628 (987)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~ 628 (987)
T Consensus 271 -------------------------------------------------------------------------------- 270 (530)
T COG0488 271 -------------------------------------------------------------------------------- 270 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 629 LFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEI 708 (987)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (987)
........+..
T Consensus 271 --~~~~~~~k~a~------------------------------------------------------------------- 281 (530)
T COG0488 271 --KAAASKAKKAK------------------------------------------------------------------- 281 (530)
T ss_pred --HhccchHHHHH-------------------------------------------------------------------
Confidence 00000000000
Q ss_pred HHHHHHHHHHHHH--hcccCC-CCCC--CCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCC
Q 001980 709 IRGGESVGSVFST--LDRSTR-IDPD--DPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASG 783 (987)
Q Consensus 709 ~~~~~s~~ri~~~--~~~~~~-~~~~--~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sG 783 (987)
.....++++.+. ...+.. ..+. .....+....+--++++|+++.|+++ .++++++||.|.+|++||||||||
T Consensus 282 -sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG 358 (530)
T COG0488 282 -SRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNG 358 (530)
T ss_pred -HHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCC
Confidence 000000111100 000000 0000 00000001123359999999999643 469999999999999999999999
Q ss_pred CChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEcccc-ccc-cccHHHHhccCCCCCCHHHHHHHHHHcC
Q 001980 784 SGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP-ALF-AASIFDNIAYGKEGATEAEVVEAARAAN 861 (987)
Q Consensus 784 sGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp-~lF-~gTIreNL~~~~~~~sd~ei~~al~~a~ 861 (987)
+|||||+++|.|-..|.+|+|.++-. -++||.+|+. .++ +.|+-|++....++..+.++...|.+.+
T Consensus 359 ~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 359 AGKSTLLKLLAGELGPLSGTVKVGET-----------VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCHHHHHHHHhhhcccCCceEEeCCc-----------eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 99999999999999999999998742 4699999998 444 3489999987776666889999999988
Q ss_pred chhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecC
Q 001980 862 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHR 941 (987)
Q Consensus 862 l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHR 941 (987)
+..- -..++|+ .||||||-|+.||+.++.+|.+|||||||.+||.+|...+.++|.++ .-|||+|||+
T Consensus 428 F~~~------~~~~~v~----~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHD 495 (530)
T COG0488 428 FTGE------DQEKPVG----VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHD 495 (530)
T ss_pred CChH------HHhCchh----hcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCC
Confidence 7642 3345555 59999999999999999999999999999999999999999999986 4599999999
Q ss_pred chhhhc-cCEEEEEeCCEEEEe-cChhHHhcC
Q 001980 942 LSTIRG-VDCIGVVQDGRIVEQ-GSHSELVSR 971 (987)
Q Consensus 942 l~ti~~-~D~Iivl~~G~ive~-Gt~~eLl~~ 971 (987)
...+.. |++|+++++ ++.++ |++++..+.
T Consensus 496 r~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 496 RYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred HHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999977 699999999 88887 888877654
No 68
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.2e-62 Score=595.72 Aligned_cols=529 Identities=14% Similarity=0.134 Sum_probs=432.8
Q ss_pred HHHHHHHhCCchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWP-----YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLI 482 (987)
Q Consensus 408 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (987)
+++++++..|+|. .+++.+++.++...+....+++.+.+++.....+..........+.++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777765 45566666667777777778888888776653322112111223444455555666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 483 QHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFI 562 (987)
Q Consensus 483 ~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 562 (987)
..++......++...+|++.+++....++.|||. +.|.+.+|+++|++.+...+...+..++..++.++++++.++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888899999999999988889999984 6799999999999999999999999999999999988887776
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHH
Q 001980 563 -VEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQT 641 (987)
Q Consensus 563 -~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~ 641 (987)
.+|.+++++++.+|+.+++..+..+.+.+..++.+...+.....+.|.++|+++||+|+.++.+.+++.+..+...+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999888888888889999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-c----cCCCHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHH
Q 001980 642 LRRSLTAGILFGISQFALHA--SEALILWYGVHLVG-K----GVSTFSKVIKV-FVV---LVVTANSVAETVSLAPEIIR 710 (987)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~lv~-~----~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~ 710 (987)
.+..........+..++... ..++.++.|...+. . |.++.+.++.. +.+ +.....++..+.....++.+
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777776543 22333334443332 2 67888876653 332 34557888999999999999
Q ss_pred HHHHHHHHHHHhcccCCCC------CCCCC---C-------------CCCCCccccEEEEeEEEECCCCCCccceeeeeE
Q 001980 711 GGESVGSVFSTLDRSTRID------PDDPD---A-------------EPVETIRGEIELRHVDFAYPSRPDVVVFKDFNL 768 (987)
Q Consensus 711 ~~~s~~ri~~~~~~~~~~~------~~~~~---~-------------~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl 768 (987)
...+.+|++++++.+++.. +..+. . .......+.|+++||+|+|+++ .++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceE
Confidence 9999999999987543211 00000 0 0011234679999999999743 369999999
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC---
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK--- 845 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~--- 845 (987)
+|++||++||+|+||||||||+++|.|+++|++|+|.+|+ |++++||||+|.+|++|++|||.++.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999874 67899999999999999999998864
Q ss_pred ----CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001980 846 ----EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 921 (987)
Q Consensus 846 ----~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~ 921 (987)
++.++++++++++.+++.+++.. |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 34678899999999999999987 999999986 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeC
Q 001980 922 LQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 956 (987)
Q Consensus 922 I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~ 956 (987)
+++.+++. ++|+|+||||++++..||+|++|+.
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999874 8999999999999999999999973
No 69
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7.4e-65 Score=603.06 Aligned_cols=192 Identities=23% Similarity=0.315 Sum_probs=163.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.++++|++++|.+ ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ .++
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999953 25999999999999999999999999999999999999999999986 159
Q ss_pred EEEcccccc-ccccHHHHhccCCCCCC-HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 824 GLVQQEPAL-FAASIFDNIAYGKEGAT-EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 824 ~~VpQdp~l-F~gTIreNL~~~~~~~s-d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
+|+||++.+ ++.|+++|+.++..... +..+.++++..++.+... .++ ..||||||||++|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-------~~~----~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-------KNV----KDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-------CCc----ccCCHHHHHHHHHHHHHhcC
Confidence 999999875 56799999986532222 334567777777765433 333 36999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 001980 902 PAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt 964 (987)
|+||||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++ ++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999999999999999999999998753 7899999999998865 899999965 8877776
No 70
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.6e-60 Score=622.14 Aligned_cols=540 Identities=19% Similarity=0.216 Sum_probs=403.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 420 PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVR 499 (987)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 499 (987)
+.++..++..++..++....++++..+++.+...... ......+++.++++.++..++.....+...+.+.++...++
T Consensus 317 ~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~ 394 (1522)
T TIGR00957 317 PYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAP--DWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVM 394 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555566666777666544322111 11111122223333333333333334456778889999999
Q ss_pred HHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001980 500 RMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLV 579 (987)
Q Consensus 500 ~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~ 579 (987)
..+|+|+++.+..+++. ...|+++|+++.|++.+.... ..+..++...+.+++++++++......+++.++++++++
T Consensus 395 ~~iy~K~L~l~~~~~~~--~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~ 471 (1522)
T TIGR00957 395 GAVYRKALVITNSARKS--STVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMV 471 (1522)
T ss_pred HHHHHHHHhCChhhcCC--CCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999998864 788999999999999998855 455555555555555555444332223344444444444
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 580 LANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFAL 659 (987)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (987)
.+.+...+.+++..++......+....+.|.++|+++||.|++|+.+.+++.+..+...+...+......+.........
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 551 (1522)
T TIGR00957 472 PLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTP 551 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666667777778889999999999999999999999999987766655444333333322221111111
Q ss_pred HHHHHHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC
Q 001980 660 HASEALILWYGVHLVGK--GVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEP 737 (987)
Q Consensus 660 ~~~~~~~~~~g~~lv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~ 737 (987)
..+....++.+++.. +.++.+..+..+.++.....|+..+......+.++..+.+|+.++++.+++... ......
T Consensus 552 --~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~-~~~~~~ 628 (1522)
T TIGR00957 552 --FLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPD-SIERRT 628 (1522)
T ss_pred --HHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-cccccc
Confidence 111222344455543 467888888777777777788999999999999999999999999976533211 000011
Q ss_pred CCC-ccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH
Q 001980 738 VET-IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 816 (987)
Q Consensus 738 ~~~-~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l 816 (987)
..+ ..+.|+++|++|+|++. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||
T Consensus 629 ~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------- 699 (1522)
T TIGR00957 629 IKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------- 699 (1522)
T ss_pred cCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--------
Confidence 111 12479999999999643 34699999999999999999999999999999999999999999999997
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+|+||||+|.+|++||||||.++.+ .++++..++++.+++.+.+..+|+|++|.+|++|.+||||||||++|||
T Consensus 700 -----~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLAR 773 (1522)
T TIGR00957 700 -----SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLAR 773 (1522)
T ss_pred -----EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHH
Confidence 5999999999999999999998865 5678888999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH---HcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALER---LMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~---~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
|++++|+|+|||||||+||+++++.|.+.+.+ ..+++|+|+|||+++.+..||+|++|++|+|++.|+|++++++ +
T Consensus 774 Al~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~-~ 852 (1522)
T TIGR00957 774 AVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR-D 852 (1522)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc-c
Confidence 99999999999999999999999999999964 4578999999999999999999999999999999999999986 7
Q ss_pred chHHHHHHhh
Q 001980 974 GAYSRLLQLQ 983 (987)
Q Consensus 974 g~f~~l~~~q 983 (987)
+.|+++++.+
T Consensus 853 ~~~~~l~~~~ 862 (1522)
T TIGR00957 853 GAFAEFLRTY 862 (1522)
T ss_pred hhHHHHHHhh
Confidence 8898887643
No 71
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=5.7e-63 Score=539.27 Aligned_cols=462 Identities=26% Similarity=0.460 Sum_probs=362.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ 177 (987)
.++++++++.|| ...+++||||++++||++||+|+||+|||||+++|.|+|+|++|+|.++|+++.-.++ +..+..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999998 3568999999999999999999999999999999999999999999999999987766 567778
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
||+|+|++.|++. ||.|||.+|.+......+........+.+..+.+ |++-...+....||-||||||.|-+|||++
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 9999999999977 9999999998642111111111122223334444 777778888899999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhhhhHHHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAGAYASLI 334 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 334 (987)
|++||||||||-|-|...+.+++.++++. .|+|||+|||++.++.. |||+-||++|+++..-++ .
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~--~----------- 225 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP--V----------- 225 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC--C-----------
Confidence 99999999999999999999999999986 59999999999999877 899999999998643210 0
Q ss_pred HHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchHHHHHHHH
Q 001980 335 RFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKL 414 (987)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (987)
.+ . .. . .+
T Consensus 226 -------------~~---~-----t~-----------------------------~-------------------el--- 233 (501)
T COG3845 226 -------------AE---T-----TE-----------------------------E-------------------EL--- 233 (501)
T ss_pred -------------CC---C-----CH-----------------------------H-------------------HH---
Confidence 00 0 00 0 00
Q ss_pred hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 415 NAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENL 494 (987)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (987)
...+...
T Consensus 234 --------------------------------a~lMvG~----------------------------------------- 240 (501)
T COG3845 234 --------------------------------AELMVGR----------------------------------------- 240 (501)
T ss_pred --------------------------------HHHhcCC-----------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001980 495 TTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGT 574 (987)
Q Consensus 495 ~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~ 574 (987)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T COG3845 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001980 575 YPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGI 654 (987)
Q Consensus 575 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (987)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T COG3845 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 001980 655 SQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPD 734 (987)
Q Consensus 655 ~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~ 734 (987)
.+ .......+
T Consensus 241 -----------------------~v-------------------------------------------~~~~~~~~---- 250 (501)
T COG3845 241 -----------------------EV-------------------------------------------VLRVVKPP---- 250 (501)
T ss_pred -----------------------cc-------------------------------------------ccccccCC----
Confidence 00 00000000
Q ss_pred CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccC-CC
Q 001980 735 AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI-RR 813 (987)
Q Consensus 735 ~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di-~~ 813 (987)
..|.+--++++|++..-+ + +.+.+++|||+|++||.+||.|-.|-|-+-|+.+|.|+.+|.+|+|.++|.|+ ..
T Consensus 251 ---~~pg~~vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~ 325 (501)
T COG3845 251 ---STPGEVVLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGR 325 (501)
T ss_pred ---CCCCCeEEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEecccc
Confidence 011122589999998543 2 34689999999999999999999999999999999999999999999999997 66
Q ss_pred CCHHHHh-cccEEEccccc----cccccHHHHhccCCCC---------CCHHHHHHHHHHcCchhhHhhC---CCcCCCc
Q 001980 814 LNLKSLR-LKIGLVQQEPA----LFAASIFDNIAYGKEG---------ATEAEVVEAARAANVHGFVSAL---PNAYKTP 876 (987)
Q Consensus 814 i~l~~lR-~~i~~VpQdp~----lF~gTIreNL~~~~~~---------~sd~ei~~al~~a~l~~~i~~l---p~gldt~ 876 (987)
.+...+| ..++|||.|.+ ....|+.||+.+.... ....++...++ +.++.. +.+.+++
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~~~~ 400 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSPDAP 400 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCCCcc
Confidence 6777654 57999999985 5678999999765432 11233322222 222221 3455555
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEE
Q 001980 877 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVV 954 (987)
Q Consensus 877 vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl 954 (987)
+. +||||+.||+-+||-|.++|++||..+||-+||..+.+.|++.|.+.. +|+.|++|+-+|+.+.. ||||.||
T Consensus 401 a~----~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi 476 (501)
T COG3845 401 AR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVI 476 (501)
T ss_pred hh----hcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeee
Confidence 54 699999999999999999999999999999999999999999999876 68999999999998865 8999999
Q ss_pred eCCEEEEecChhH
Q 001980 955 QDGRIVEQGSHSE 967 (987)
Q Consensus 955 ~~G~ive~Gt~~e 967 (987)
.+|+|+....+++
T Consensus 477 ~~Gri~~~~~~~~ 489 (501)
T COG3845 477 YEGRIVGIVPPEE 489 (501)
T ss_pred eCCceeccccccc
Confidence 9999998877765
No 72
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-63 Score=556.57 Aligned_cols=329 Identities=36% Similarity=0.506 Sum_probs=300.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 7 LGCTYGIACMSWALVFWYAGVFIRN-GVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
-++..++++++++++..|.+....+ |.++....+.++...--.+.|+..+...++.-..+.+|.+++..+++.+++...
T Consensus 227 s~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~ 306 (559)
T COG4988 227 SAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPG 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCC
Confidence 4567889999999999998888888 899998888888888888999999999999999999999999999988754322
Q ss_pred CCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 86 DPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
...........+..++.+|++|.|++.+ ++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||++
T Consensus 307 ~~~~~~~~~~~~~ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~ 384 (559)
T COG4988 307 SGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGID 384 (559)
T ss_pred CccccccccCCCceeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcc
Confidence 2111011122233455669999998643 68999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
+++++.+.||++++||+|+|++|++|+||||++++++.+++++.++++.+++.+++.. |+|+||.+||+|.+|||||+|
T Consensus 385 l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~Q 463 (559)
T COG4988 385 LRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQ 463 (559)
T ss_pred ccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|++|||||+++++++|||||||+||.++++.+.+.|.++.+++|+|+||||++.+..+|+|++|++|+++++|+|+++.+
T Consensus 464 RlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 464 RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHH
Q 001980 326 KAGAYASLIRFQE 338 (987)
Q Consensus 326 ~~~~~~~~~~~~~ 338 (987)
+++.|++++..|+
T Consensus 544 ~~~~y~~l~~~q~ 556 (559)
T COG4988 544 KQGLYANLLKQQE 556 (559)
T ss_pred cCcHHHHHHHHHh
Confidence 9999999987664
No 73
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.8e-62 Score=590.61 Aligned_cols=328 Identities=45% Similarity=0.720 Sum_probs=304.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
..++..++..+..++++++|++.+..+.+++|.+.+++.+......|+..+...+..+..+..|++|++++++.+++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 317 (567)
T COG1132 238 LAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED 317 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 34677788888999999999999999999999999988888888899999999999999999999999999998654322
Q ss_pred CCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 86 DPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
.... .....+.|+++||+|+|++ +.++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+||+|
T Consensus 318 ~~~~---~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~d 392 (567)
T COG1132 318 PPDP---LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGID 392 (567)
T ss_pred CCCC---CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEe
Confidence 1111 1223456999999999984 3459999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
+++++.+++|++|+||||+|+||++||+|||.+|.|+.++++++++|+.++++++++.+|+|+||.+||+|.+|||||||
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQ 472 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQ 472 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|++||||++++|+|+|||||||+||+++++.+++.+.++.++||+|+|+||++.++.||+|+||++|+|++.|+|+||++
T Consensus 473 rlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHH
Q 001980 326 KAGAYASLIRFQE 338 (987)
Q Consensus 326 ~~~~~~~~~~~~~ 338 (987)
++|.|++++..+.
T Consensus 553 ~~g~y~~l~~~~~ 565 (567)
T COG1132 553 KGGLYARLYQAQG 565 (567)
T ss_pred cCCHHHHHHHHhh
Confidence 9999999987653
No 74
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.6e-62 Score=589.75 Aligned_cols=326 Identities=29% Similarity=0.418 Sum_probs=280.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001980 8 GCTYGIACMSWALVFWYAGVFIRNGVTDGGKA---------FTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIK 78 (987)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~ 78 (987)
++..++..++.+++++++++.+. |.++.|.+ +.++.+......|+..+...+..+.+++.+++|+.++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 329 (588)
T PRK11174 251 AVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLE 329 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444455455566665544 67776643 222233344568899999999999999999999999998
Q ss_pred cCCCCCCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 001980 79 QKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158 (987)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~ 158 (987)
.+++... ......+....+.|+++||+|.|+++ .++|+|+||+|++|+++|||||||||||||+++|+|++ |++|+
T Consensus 330 ~~~~~~~-~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~ 405 (588)
T PRK11174 330 TPLAHPQ-QGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS 405 (588)
T ss_pred CCCcccC-CCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence 7543211 11101111123469999999877532 45899999999999999999999999999999999999 99999
Q ss_pred EEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCC
Q 001980 159 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQ 238 (987)
Q Consensus 159 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~ 238 (987)
|.+||+|+++++.+++|++|+||||+|+||++||+|||++|.|+.++++++++|+.++++++++.+|+|++|.+||+|.+
T Consensus 406 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~ 485 (588)
T PRK11174 406 LKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485 (588)
T ss_pred EEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEec
Q 001980 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG 318 (987)
Q Consensus 239 LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g 318 (987)
|||||||||+|||||+++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|+++++|
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G 565 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQG 565 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChHHHHHhhhhHHHHHHHHH
Q 001980 319 THEELIAKAGAYASLIRFQE 338 (987)
Q Consensus 319 ~~~~l~~~~~~~~~~~~~~~ 338 (987)
+|+|++++++.|++++..|.
T Consensus 566 ~~~eL~~~~~~y~~l~~~q~ 585 (588)
T PRK11174 566 DYAELSQAGGLFATLLAHRQ 585 (588)
T ss_pred CHHHHHhcchHHHHHHHHhh
Confidence 99999999999999886553
No 75
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.6e-61 Score=594.66 Aligned_cols=324 Identities=35% Similarity=0.465 Sum_probs=296.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
..++..++..+..++++|+|++++.+|.+|.|.++++..+......|+..+...+..+++++.+++|+.++++.+++...
T Consensus 361 ~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 440 (686)
T TIGR03797 361 LTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE 440 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 34555666778888899999999999999999999988888888899999999999999999999999999987554221
Q ss_pred CCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 86 DPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
. ...+....+.|+++||+|+|++. +.++|+|+||+|++||++||||+||||||||+|+|+|+++|++|+|.+||+|
T Consensus 441 ~---~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 516 (686)
T TIGR03797 441 A---KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQD 516 (686)
T ss_pred C---cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE
Confidence 1 11112234579999999999743 3569999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
+++++.+++|++|+||||+|++|++||+|||.++.| .++++++++++.++++++++.+|+|++|.+|++|.+|||||||
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQ 595 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQ 595 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 999999999999999999999999999999999988 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
||+|||||+++|+|||||||||+||+++++.+.+.|+++ ++|+|+||||++.++.||+|++|++|+|+++|+|+++++
T Consensus 596 RialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 596 RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999999886 689999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHH
Q 001980 326 KAGAYASLIRF 336 (987)
Q Consensus 326 ~~~~~~~~~~~ 336 (987)
+++.|++++..
T Consensus 674 ~~~~y~~l~~~ 684 (686)
T TIGR03797 674 REGLFAQLARR 684 (686)
T ss_pred CCcHHHHHHHh
Confidence 99999988754
No 76
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-62 Score=524.74 Aligned_cols=327 Identities=43% Similarity=0.613 Sum_probs=300.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 001980 11 YGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNG 90 (987)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~ 90 (987)
..+..++.+..-.+.+|++..+.+|+|+..-+..+++.+.+|+..+......++....-+++++++++++++..+.+ +.
T Consensus 450 n~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P-~a 528 (790)
T KOG0056|consen 450 NGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP-GA 528 (790)
T ss_pred hhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC-CC
Confidence 34444555555566678888999999998888889999999999999999999999999999999999887764332 22
Q ss_pred CcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC
Q 001980 91 RCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ 170 (987)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~ 170 (987)
.+.....+.|+|+||+|.|+. .+++|+||||+++||+.+|+|||||+||||++++|.++++.++|.|.+||+|++...
T Consensus 529 ~pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 529 PPLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVT 606 (790)
T ss_pred CCccccCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHH
Confidence 333445688999999999974 467999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
..++|++||.||||..|||+||..||.+++|.++.+++.++++.++.||.+..+|+|++|.+||+|-.||||||||||||
T Consensus 607 ~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiA 686 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIA 686 (790)
T ss_pred HHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh-hhh
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK-AGA 329 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~ 329 (987)
|+++++|.|++|||+|||||..+++.|+.+|.++..++|.|+|+||++.+-+||.|+++++|+|+|.|+|+|++++ .|.
T Consensus 687 RtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~ 766 (790)
T KOG0056|consen 687 RTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGA 766 (790)
T ss_pred HHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 799
Q ss_pred HHHHHHHHHhh
Q 001980 330 YASLIRFQEMV 340 (987)
Q Consensus 330 ~~~~~~~~~~~ 340 (987)
|+++++.|+.+
T Consensus 767 Ya~MWq~qqa~ 777 (790)
T KOG0056|consen 767 YADMWQAQQAM 777 (790)
T ss_pred HHHHHHHHHhc
Confidence 99999876654
No 77
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-61 Score=531.91 Aligned_cols=325 Identities=30% Similarity=0.507 Sum_probs=280.8
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001980 6 GLGCTYGIACMSWA-LVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSF-SNLGAFSKGKAAGYKLMEIIKQKPSI 83 (987)
Q Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ri~~~l~~~~~~ 83 (987)
......++..+.++ +++|.+ ..+..|..+...+..+++.++....++..+. ..+....+...|+.|+.++++++++.
T Consensus 245 ~~a~~~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~ 323 (573)
T COG4987 245 SDAILLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEV 323 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCccc
Confidence 33444444445555 334444 3345566665555555555455555555555 67788889999999999999987764
Q ss_pred CCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 84 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
..... .. +..+..++++||+|+|+++ +.++|+|+||++++||++||+|+||||||||+++|.|.++|++|+|.++|
T Consensus 324 ~~~~~--~~-~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g 399 (573)
T COG4987 324 TFPDE--QT-ATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399 (573)
T ss_pred CCCcc--cc-CCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC
Confidence 32211 11 1112279999999999975 45799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 164 VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 164 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
.++..++.+.+|+.|++++|.+++|++|+|||+.+++|++++++++++++.+++++.++..|+|++|++||.|..|||||
T Consensus 400 ~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE 479 (573)
T COG4987 400 VEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGE 479 (573)
T ss_pred cChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHH
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 323 (987)
|||+||||+|++|++++||||||.+||+.|++.+++.+.+..+|||+|+||||+..++.+|||++|++|+++++|+|+++
T Consensus 480 ~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~L 559 (573)
T COG4987 480 RRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAEL 559 (573)
T ss_pred HHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhh
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHH
Q 001980 324 IAKAGAYASLIR 335 (987)
Q Consensus 324 ~~~~~~~~~~~~ 335 (987)
++++|.|.++++
T Consensus 560 l~~~g~~~~l~q 571 (573)
T COG4987 560 LANNGRYKRLYQ 571 (573)
T ss_pred hccccHHHHHhc
Confidence 999999988763
No 78
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-61 Score=529.38 Aligned_cols=320 Identities=38% Similarity=0.572 Sum_probs=283.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 001980 12 GIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGR 91 (987)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~ 91 (987)
.+.....+.+.+.+..-+.++.+|.+.+.........+..|+..+...+..+.++..-+.-++...+....+.. ...
T Consensus 267 ~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~---~~~ 343 (591)
T KOG0057|consen 267 AIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE---AAL 343 (591)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh---ccC
Confidence 33334445555666666788899999988777777777789988988888888888777766655433222111 112
Q ss_pred cCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH
Q 001980 92 CLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL 171 (987)
Q Consensus 92 ~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~ 171 (987)
+....++.|+|+||+|+|++ ++++|+++||+|++||++||||+|||||||++|+|.++++ ++|+|++||+|+++++.
T Consensus 344 ~i~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 344 PIELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSL 420 (591)
T ss_pred CcccCCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhCh
Confidence 22334567999999999984 4569999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
+.+|+.||||||+..||++||.+||.+|++..+++++.++|+.++++|.+..+|+||+|.+||+|..|||||||||+|||
T Consensus 421 ~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaR 500 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLAR 500 (591)
T ss_pred HHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHH
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYA 331 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 331 (987)
|+++||+|+++|||||+||.++|+.+.+.+.+...+||+|+|.||+.+++.+|+|+++++|++.+.|+|+|++...+.|+
T Consensus 501 a~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~ 580 (591)
T KOG0057|consen 501 AFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYA 580 (591)
T ss_pred HHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHH
Confidence 99999999999999999999999999999999878999999999999999999999999999999999999999888888
Q ss_pred HHHHHH
Q 001980 332 SLIRFQ 337 (987)
Q Consensus 332 ~~~~~~ 337 (987)
.++..+
T Consensus 581 ~~w~~~ 586 (591)
T KOG0057|consen 581 DLWTTQ 586 (591)
T ss_pred HHhccc
Confidence 887654
No 79
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=4.7e-61 Score=593.20 Aligned_cols=326 Identities=34% Similarity=0.524 Sum_probs=295.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
...+..++..++.++++|+|++++.+|.+|+|.++++..+......|+..+...+..+++++.+++|+.++++.+++...
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 34556667777888899999999999999999999988888888899999999999999999999999999987654321
Q ss_pred CCC---C-CCcC-CCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE
Q 001980 86 DPT---N-GRCL-DEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 160 (987)
Q Consensus 86 ~~~---~-~~~~-~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~ 160 (987)
... . .... +...+.|+++||+|+|++. +.++|+|+||+|++||+++||||||||||||+++|+|+++|++|+|.
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 537 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 110 0 0111 2234579999999999853 34699999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCC
Q 001980 161 LDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240 (987)
Q Consensus 161 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LS 240 (987)
+||.|+++++.+++|++|+||||+|++|++||+|||.++.|+.++++++++++.+++++++..+|+|++|.+||+|.+||
T Consensus 538 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LS 617 (710)
T TIGR03796 538 FDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLS 617 (710)
T ss_pred ECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCC
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecCh
Q 001980 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTH 320 (987)
Q Consensus 241 gGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~ 320 (987)
|||||||+|||||+++|+|+|||||||+||+++++.+.+.|++ .++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 618 GGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~ 695 (710)
T TIGR03796 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTH 695 (710)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999986 48999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHH
Q 001980 321 EELIAKAGAYASLI 334 (987)
Q Consensus 321 ~~l~~~~~~~~~~~ 334 (987)
++++++++.|++++
T Consensus 696 ~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 696 EELWAVGGAYARLI 709 (710)
T ss_pred HHHHHcCCcHHHHh
Confidence 99999989888765
No 80
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=5.6e-61 Score=588.88 Aligned_cols=322 Identities=42% Similarity=0.670 Sum_probs=291.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 001980 8 GCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDP 87 (987)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 87 (987)
.+..++..++.++++++|++++.+|.+++|.+++++.+......|+..+...+..+++++.+.+|+.++++.+++.+...
T Consensus 389 ~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 468 (711)
T TIGR00958 389 WTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG 468 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 34445556667778899999999999999999999999888899999999999999999999999999998765432111
Q ss_pred CCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 001980 88 TNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK 167 (987)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 167 (987)
...+.+..+.|+++||+|+|+++++.++|+|+||+|++||+++||||||||||||+++|+|+++|++|+|.+||+|++
T Consensus 469 --~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 546 (711)
T TIGR00958 469 --TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLV 546 (711)
T ss_pred --CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHH
Confidence 111122345699999999998654567999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 168 TLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 168 ~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
+++.+++|++|+||+|+|++|++||+|||.+|.++.++++++++++.++++++++.+|+|++|.+|++|.+|||||||||
T Consensus 547 ~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRl 626 (711)
T TIGR00958 547 QYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRI 626 (711)
T ss_pred hcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHH
Confidence 99999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhh
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+||||++++|+|+|||||||+||+++++.+.+ . ...+++|+|+||||++.++.+|+|++|++|+|+++|+|+|+++++
T Consensus 627 alARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~ 704 (711)
T TIGR00958 627 AIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ 704 (711)
T ss_pred HHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCC
Confidence 99999999999999999999999999999998 3 234689999999999999999999999999999999999999988
Q ss_pred hhHHHH
Q 001980 328 GAYASL 333 (987)
Q Consensus 328 ~~~~~~ 333 (987)
+.|+++
T Consensus 705 ~~y~~l 710 (711)
T TIGR00958 705 GCYKHL 710 (711)
T ss_pred CchHhc
Confidence 888764
No 81
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.7e-60 Score=574.83 Aligned_cols=327 Identities=43% Similarity=0.631 Sum_probs=295.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 001980 7 LGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQD 86 (987)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 86 (987)
..+..++..++.++++++|++.+..|.+++|.+++++.+......|+..+...+..+..++.+++|+.++++.+++.+..
T Consensus 252 ~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 331 (582)
T PRK11176 252 DPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG 331 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Confidence 44556666677778889999999999999999888887777788999999999999999999999999999765432111
Q ss_pred CCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 87 PTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
. ...+...+.|+++|++|+|++. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.|+
T Consensus 332 ~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i 407 (582)
T PRK11176 332 K---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL 407 (582)
T ss_pred C---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEh
Confidence 1 1112223469999999999753 35699999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCC-CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 167 KTLQLRWLRDQIGLVNQEPALFATTILENILYGKPE-ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 167 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
++++.+++|++|+||||+|++|++||+|||.+|.++ .++++++++++.++++++++.+|+|++|.+|++|.+|||||||
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred hhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 999999999999999999999999999999999764 6889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
||+|||||+++|+|+|||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|++++.|+|+++++
T Consensus 488 Ri~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999999877899999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHH
Q 001980 326 KAGAYASLIRFQ 337 (987)
Q Consensus 326 ~~~~~~~~~~~~ 337 (987)
+++.|++++..+
T Consensus 568 ~~~~y~~l~~~~ 579 (582)
T PRK11176 568 QNGVYAQLHKMQ 579 (582)
T ss_pred CCChHHHHHHHH
Confidence 999999988654
No 82
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.2e-60 Score=586.58 Aligned_cols=324 Identities=32% Similarity=0.498 Sum_probs=294.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 001980 7 LGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQD 86 (987)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 86 (987)
.++..++..++.++++|+|++++.+|.+|+|.++++..+......|+..+...+..+++++.+.+|+.++++.+++.+..
T Consensus 382 ~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 461 (708)
T TIGR01193 382 QAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINK 461 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 34555666677788899999999999999999999888888888999999999999999999999999999876543211
Q ss_pred CCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 87 PTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
. .....+...+.|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+
T Consensus 462 ~-~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i 538 (708)
T TIGR01193 462 K-KRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL 538 (708)
T ss_pred c-cccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEH
Confidence 1 10111223457999999999974 24689999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcCCCCCchhcHHHHHhcC-CCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 167 KTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 167 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
++++.+++|++|+||||+|++|++||+|||.++ .++.++++++++++.+++++++..+|.|++|.+|++|.+|||||||
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQ 618 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQ 618 (708)
T ss_pred HHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHH
Confidence 999999999999999999999999999999998 5778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
||+||||++++|+|||||||||+||+++++.+.+.|.++ +++|+|+||||++.++.||+|++|++|++++.|+|+++++
T Consensus 619 RialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999999885 6899999999999999999999999999999999999999
Q ss_pred hhhhHHHHH
Q 001980 326 KAGAYASLI 334 (987)
Q Consensus 326 ~~~~~~~~~ 334 (987)
+++.|++++
T Consensus 698 ~~~~y~~l~ 706 (708)
T TIGR01193 698 RNGFYASLI 706 (708)
T ss_pred cCCcHHHHh
Confidence 889998775
No 83
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=5.2e-60 Score=581.94 Aligned_cols=319 Identities=34% Similarity=0.521 Sum_probs=290.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
...+..++..++.++++|+|++++.+|.+|+|.+++++.+......|+..+...+..+..++.+.+|+.++++.+++...
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 34455666667788889999999999999999999988888888899999999999999999999999999987654221
Q ss_pred CCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 86 DPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
.. .....+...+.|+++||+|+|++. +.++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|
T Consensus 451 ~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 528 (694)
T TIGR03375 451 GT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD 528 (694)
T ss_pred CC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 11 111112234579999999999753 3468999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
+++++..++|++|+||||+|++|++||+|||.++.|+.++++++++++.++++++++.+|+|++|.+||+|.+|||||||
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ 608 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|++|||||+++|+++|||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|+++++|+|+|+++
T Consensus 609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999976
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
+
T Consensus 689 ~ 689 (694)
T TIGR03375 689 A 689 (694)
T ss_pred H
Confidence 4
No 84
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.2e-56 Score=583.79 Aligned_cols=525 Identities=19% Similarity=0.214 Sum_probs=393.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 428 GSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAIL 507 (987)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 507 (987)
..++..++....++++..++..+. ............+++.++++.++..++.....+.....+.++...+...+|+|++
T Consensus 88 ~~~~~~~~~~~~P~ll~~li~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L 166 (1490)
T TIGR01271 88 LLYFGEATKAVQPLLLGRIIASYD-PFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTL 166 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666666665442 1111100111123333333334444555555666667777788888888899999
Q ss_pred hCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 508 RNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQL 587 (987)
Q Consensus 508 ~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~ 587 (987)
+.+...++. .++|.++|++++|++.+...+... ..++...+.+++++++++....+.+++.++++++++.+..+..+
T Consensus 167 ~l~~~~~~~--~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~ 243 (1490)
T TIGR01271 167 KLSSRVLDK--ISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQ 243 (1490)
T ss_pred hCCHHHhcC--CCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988874 788999999999999999976543 44445555555555555555455566666667776666666666
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 588 SLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALIL 667 (987)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (987)
++.+..++......+....+.|.++|+++||.|++|+.|.+++.+.-+...+...+......+...+..... ..+..+
T Consensus 244 ~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 321 (1490)
T TIGR01271 244 KMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSG--FFVVFL 321 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 666667777777778889999999999999999999999988887766555544444433322222222211 223344
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEE
Q 001980 668 WYGVHLVGKGVSTFSKVIKVFVVLVVTANSVA-ETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIE 746 (987)
Q Consensus 668 ~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~ 746 (987)
.++.+.+..+ .+.+.+++++.++.....++. .+......+.++..+++|+.+++..++... .. . ......|+
T Consensus 322 ~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~-~~---~--~~~~~~i~ 394 (1490)
T TIGR01271 322 SVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKT-LE---Y--NLTTTEVE 394 (1490)
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc-cc---c--cCCCCceE
Confidence 4555554444 567777776666555555553 466667777889999999999997543211 10 0 01123589
Q ss_pred EEeEEEECCCCC-------------------------------CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 747 LRHVDFAYPSRP-------------------------------DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 747 f~~vsf~Y~~~~-------------------------------~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
++|++|.|+... ..++|+|+||+|++||.++|+||+|||||||+++|+|
T Consensus 395 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G 474 (1490)
T TIGR01271 395 MVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG 474 (1490)
T ss_pred EecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 999999995310 1358999999999999999999999999999999999
Q ss_pred cCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCC
Q 001980 796 FYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT 875 (987)
Q Consensus 796 l~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt 875 (987)
+++|++|+|.+|| +|+||||+|.+|++||+|||.++.+ +++++..++++.+++.+.+..+|+|.+|
T Consensus 475 ~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t 540 (1490)
T TIGR01271 475 ELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKT 540 (1490)
T ss_pred CCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccc
Confidence 9999999999998 4999999999999999999998754 5666777888999999999999999999
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHcCCCeEEEEecCchhhhccCEEEEE
Q 001980 876 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA-LERLMRGRTTVLVAHRLSTIRGVDCIGVV 954 (987)
Q Consensus 876 ~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~-l~~~~~~~TvI~IaHRl~ti~~~D~Iivl 954 (987)
.+|++|.+|||||||||+||||++++|+|+|||||||+||+++++.|.+. +.+..+++|+|+|||+++.+..||+|++|
T Consensus 541 ~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l 620 (1490)
T TIGR01271 541 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLL 620 (1490)
T ss_pred cccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999999985 66777899999999999999999999999
Q ss_pred eCCEEEEecChhHHhcCCCchHHHHH
Q 001980 955 QDGRIVEQGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 955 ~~G~ive~Gt~~eLl~~~~g~f~~l~ 980 (987)
++|+|++.|+|+++.+. ++.|.+++
T Consensus 621 ~~g~i~~~g~~~~l~~~-~~~~~~~~ 645 (1490)
T TIGR01271 621 HEGVCYFYGTFSELQAK-RPDFSSLL 645 (1490)
T ss_pred ECCEEEEEcCHHHHHhc-ChHHHHHH
Confidence 99999999999999875 56676665
No 85
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.7e-57 Score=554.68 Aligned_cols=479 Identities=23% Similarity=0.301 Sum_probs=368.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 483 QHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFI 562 (987)
Q Consensus 483 ~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 562 (987)
..+...+.+.++-..+-..+|++.++.+-.-- ..+..|+++|-++.|++.+++.... +..+....+.+++++..++.
T Consensus 262 ~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~--~~~t~G~ivNlms~D~~ri~~~~~~-~h~~w~~Plqi~~~l~lLy~ 338 (1381)
T KOG0054|consen 262 YFFVSFRVGMRLRSALISAIYRKALRLSNSAR--GETTVGEIVNLMSVDAQRLSDAACF-LHLLWSAPLQIILALYLLYG 338 (1381)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhcCchhhc--cCCCcchhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777777788888888765533 2468999999999999999987643 34455555555555555544
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHH
Q 001980 563 VEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTL 642 (987)
Q Consensus 563 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~ 642 (987)
.--..+++.++++.+++.+..+..+..+++..+......+....++|.++|+++||.|+||+.|.++..+.-++..+...
T Consensus 339 ~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lr 418 (1381)
T KOG0054|consen 339 LLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLR 418 (1381)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444555555555566666666677788899999999999999999999988766554444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 643 RRSLTAGILFGISQFALHASEALILWYGVHL-VGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFST 721 (987)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~ 721 (987)
+.....++...+......+..++ .++.+. ...+..+....++++.+....-.|+..+-.....+.++..+++|+.++
T Consensus 419 k~~~~~~~~~~~~~~~p~lv~~~--tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~f 496 (1381)
T KOG0054|consen 419 KSAYLSALNSFLNFFSPVLVSVV--TFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEF 496 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333322 233333 345566776777777777777777777777777888899999999999
Q ss_pred hcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC
Q 001980 722 LDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801 (987)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~ 801 (987)
+..+... +......+..+.+-.|+++|.+|++.+..+.+.|+||||+|++|+.+||||++|||||||+.+|+|-.+..+
T Consensus 497 l~~~e~~-~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~s 575 (1381)
T KOG0054|consen 497 LLSEELD-PDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLS 575 (1381)
T ss_pred hcCcccC-ccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccccc
Confidence 8754322 111111122233446999999999975333459999999999999999999999999999999999999999
Q ss_pred ceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCC
Q 001980 802 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERG 881 (987)
Q Consensus 802 G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G 881 (987)
|++.++|. ++||||+|.+|+|||||||.||.| ++++.-.++++.|+|...++.||.|-.|+|||+|
T Consensus 576 G~v~v~gs-------------iaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG 641 (1381)
T KOG0054|consen 576 GSVAVNGS-------------VAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERG 641 (1381)
T ss_pred ceEEEcCe-------------EEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCc
Confidence 99999984 999999999999999999998875 8888899999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEE
Q 001980 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA-LERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960 (987)
Q Consensus 882 ~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~-l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~iv 960 (987)
.||||||||||+||||++++++|.+||.|-||+|+++-+.|.+. |+...+++|+|.|||.++.+.++|.|+||++|+|+
T Consensus 642 inLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 642 INLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred cCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEe
Confidence 99999999999999999999999999999999999998877655 55566899999999999999999999999999999
Q ss_pred EecChhHHhcCCCchHHHHHHh
Q 001980 961 EQGSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 961 e~Gt~~eLl~~~~g~f~~l~~~ 982 (987)
|.|+|+||++. ++.|.+|.+.
T Consensus 722 ~~Gty~el~~~-~~~~~~l~~~ 742 (1381)
T KOG0054|consen 722 ESGTYEELLKS-GGDFAELAHE 742 (1381)
T ss_pred cccCHHHHHhc-chhHHHHhhc
Confidence 99999999976 7888888544
No 86
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.9e-59 Score=562.98 Aligned_cols=326 Identities=29% Similarity=0.484 Sum_probs=290.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001980 5 LGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSA-IVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSI 83 (987)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~ 83 (987)
...++..++..++.++++|+|++++ +|.+++|.+++++.+. +....++..+...+..+++++.+++|+.++++.+++.
T Consensus 246 ~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~ 324 (574)
T PRK11160 246 LSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEV 324 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3445666677777778889999884 7889999887765544 3345678888889999999999999999999876542
Q ss_pred CCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 84 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
.... . .......+.|+++||+|+|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 325 ~~~~-~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g 401 (574)
T PRK11160 325 TFPT-T-STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNG 401 (574)
T ss_pred CCCc-c-cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 2111 1 1111234569999999999753 24689999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 164 VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 164 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
+++++++.+++|++|+||+|+|++|++||+|||.++.|+.++++++++++.++++++++. |+|+||.+|++|.+|||||
T Consensus 402 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGq 480 (574)
T PRK11160 402 QPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGE 480 (574)
T ss_pred EEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHH
Confidence 999999999999999999999999999999999999988899999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHH
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 323 (987)
|||++||||++++|+++|||||||+||+++++.+.+.+.++.+++|+|+||||++.++.||+|++|++|++++.|+|+|+
T Consensus 481 rqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l 560 (574)
T PRK11160 481 QRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQEL 560 (574)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHH
Q 001980 324 IAKAGAYASLIR 335 (987)
Q Consensus 324 ~~~~~~~~~~~~ 335 (987)
+++++.|+++++
T Consensus 561 ~~~~g~y~~l~~ 572 (574)
T PRK11160 561 LAQQGRYYQLKQ 572 (574)
T ss_pred HhcCcHHHHHHh
Confidence 999999998864
No 87
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5e-59 Score=563.99 Aligned_cols=311 Identities=32% Similarity=0.498 Sum_probs=282.3
Q ss_pred HHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCccE
Q 001980 21 VFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNI 100 (987)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i 100 (987)
++++++. +..|.+++|.+++++.+......|+..+...+..+.+++.+++|+.++++.+++... . . ..+...+.|
T Consensus 267 ~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~-~-~--~~~~~~~~i 341 (592)
T PRK10790 267 LLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG-N-D--DRPLQSGRI 341 (592)
T ss_pred HHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC-C-C--ccCCCCCeE
Confidence 3334444 578999999999888888888899999999999999999999999999976543111 1 1 111223569
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 001980 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 180 (987)
+++|++|+|+++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.|+++++.+++|++|+|
T Consensus 342 ~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~ 419 (592)
T PRK10790 342 DIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM 419 (592)
T ss_pred EEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEE
Confidence 999999999742 459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001980 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKIL 260 (987)
Q Consensus 181 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~il 260 (987)
|||+|++|++||+|||.++. +.++++++++++.++++++++.+|+|++|.+|++|.+|||||||||+|||||+++|+|+
T Consensus 420 v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~il 498 (592)
T PRK10790 420 VQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL 498 (592)
T ss_pred EccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999997 57889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHHHHh
Q 001980 261 LLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEM 339 (987)
Q Consensus 261 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 339 (987)
|||||||+||+++++.+.+.|+++.+++|+|+||||++.++.+|+|++|++|++++.|+|+|++++++.|+++++.+..
T Consensus 499 llDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~~ 577 (592)
T PRK10790 499 ILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLA 577 (592)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHHhh
Confidence 9999999999999999999999987789999999999999999999999999999999999999999999999876543
No 88
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.1e-58 Score=560.09 Aligned_cols=328 Identities=40% Similarity=0.616 Sum_probs=296.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 001980 7 LGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQD 86 (987)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 86 (987)
.++..++..++.++++++|++++.+|.+|+|.+++++.++.....|+..+...+..+..++.+++|+.++++.+++.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~- 321 (588)
T PRK13657 243 SVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRD- 321 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-
Confidence 3445566667777888999999999999999999988888888899999999999999999999999999876543211
Q ss_pred CCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 87 PTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
.......+...+.|+++|++|+|+++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++
T Consensus 322 ~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i 399 (588)
T PRK13657 322 PPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDI 399 (588)
T ss_pred CCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEh
Confidence 11111111223469999999999743 3589999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHH
Q 001980 167 KTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 167 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqR 246 (987)
.+++.+.+|++|+||||+|++|++|++|||+++.|+.++++++.+++.+++++++..+|+|++|.+|++|.+||||||||
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QR 479 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQR 479 (588)
T ss_pred hhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
++|||||+++|+|+|||||||+||+++++.+++.|.++.+++|+|+||||++.++.+|+|++|++|++++.|+|+++++.
T Consensus 480 ialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC
Confidence 99999999999999999999999999999999999988779999999999999999999999999999999999999998
Q ss_pred hhhHHHHHHHH
Q 001980 327 AGAYASLIRFQ 337 (987)
Q Consensus 327 ~~~~~~~~~~~ 337 (987)
.+.|.+++..+
T Consensus 560 ~~~y~~l~~~~ 570 (588)
T PRK13657 560 GGRFAALLRAQ 570 (588)
T ss_pred CChHHHHHHHh
Confidence 89999988754
No 89
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.5e-58 Score=559.03 Aligned_cols=327 Identities=45% Similarity=0.669 Sum_probs=298.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
..++..++..+..++++++|++++..|.+|+|.+++++.++.....|+..+...+..+.+++.+++|+.++++.+++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (571)
T TIGR02203 240 SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT 319 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 45566667777788889999999999999999999999888889999999999999999999999999999986554221
Q ss_pred CCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 86 DPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
.. .......+.|+++||+|+|++. +.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||++
T Consensus 320 ~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~ 395 (571)
T TIGR02203 320 GT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395 (571)
T ss_pred CC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEe
Confidence 11 1111223569999999999754 3468999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCC-CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP-EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
+++++.+++|++|+||||+|++|++|++|||.++.+ +.++++++++++.+++++++..+|+|+||.+|++|.+||||||
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqr 475 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR 475 (571)
T ss_pred HHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHH
Confidence 999999999999999999999999999999999986 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
|||+||||++++|+|+|||||||+||+++++.+.+.|.++.+++|+|+||||++.+..||+|++|++|++++.|+|++++
T Consensus 476 QRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHH
Q 001980 325 AKAGAYASLIRF 336 (987)
Q Consensus 325 ~~~~~~~~~~~~ 336 (987)
+.++.|++++..
T Consensus 556 ~~~~~~~~~~~~ 567 (571)
T TIGR02203 556 ARNGLYAQLHNM 567 (571)
T ss_pred HcCCHHHHHHHH
Confidence 888888876653
No 90
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.8e-58 Score=567.66 Aligned_cols=328 Identities=37% Similarity=0.598 Sum_probs=299.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
...+..++..++.++++|+|++++..|.+|+|.++++..+......|+..+...+..+++++.+++|+.++++.+++...
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 443 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS 443 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 34555666777888889999999999999999999988888888899999999999999999999999999987654221
Q ss_pred CCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 86 DPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
. .....+...+.|+++||+|+|++. +.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||++
T Consensus 444 ~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~ 520 (694)
T TIGR01846 444 A--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVD 520 (694)
T ss_pred C--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 1 111112234579999999999743 3458999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
+++++.+++|++|+||+|+|++|++||+|||.++.|+.++++++++|+.+++++++..+|+|++|.+|++|.+|||||||
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~q 600 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQ 600 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHH
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|++|||||+++|+|+|||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|++++.|+|+++++
T Consensus 601 ri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999878999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHH
Q 001980 326 KAGAYASLIRF 336 (987)
Q Consensus 326 ~~~~~~~~~~~ 336 (987)
+++.|++++..
T Consensus 681 ~~~~y~~l~~~ 691 (694)
T TIGR01846 681 LQGLYARLWQQ 691 (694)
T ss_pred cCChHHHHHHh
Confidence 99999998764
No 91
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.5e-58 Score=556.04 Aligned_cols=328 Identities=46% Similarity=0.727 Sum_probs=293.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 001980 9 CTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPT 88 (987)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 88 (987)
+..++..++.++++++|++++..|.+++|.++++..+......|+..++..+..+.+++.+++|+.++++.+++.+....
T Consensus 247 ~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 326 (576)
T TIGR02204 247 IVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH 326 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC
Confidence 33444556666777889999999999999998888888888899999999999999999999999999986543211111
Q ss_pred CCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC
Q 001980 89 NGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT 168 (987)
Q Consensus 89 ~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~ 168 (987)
......+..+.|+++||+|+|+++.+.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++++
T Consensus 327 ~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~ 406 (576)
T TIGR02204 327 PKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQ 406 (576)
T ss_pred CccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence 11111112346999999999985433569999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHH
Q 001980 169 LQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 169 ~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRia 248 (987)
++..++|++|+|+||+|++|++||+|||.++.|+.++++++++++.+++.++++.+|+|++|.+|++|.+||||||||++
T Consensus 407 ~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~ 486 (576)
T TIGR02204 407 LDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIA 486 (576)
T ss_pred cCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHH
Confidence 99999999999999999999999999999998877889999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhh
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAG 328 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 328 (987)
||||++++|+++|||||||+||+++++.+++.++++.+++|+|+||||++.++.+|+|++|++|++++.|+++++.++++
T Consensus 487 laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~ 566 (576)
T TIGR02204 487 IARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGG 566 (576)
T ss_pred HHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCC
Confidence 99999999999999999999999999999999999878999999999999999999999999999999999999999888
Q ss_pred hHHHHHHH
Q 001980 329 AYASLIRF 336 (987)
Q Consensus 329 ~~~~~~~~ 336 (987)
.|++++..
T Consensus 567 ~~~~l~~~ 574 (576)
T TIGR02204 567 LYARLARL 574 (576)
T ss_pred hHHHHHhh
Confidence 88887643
No 92
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.7e-58 Score=550.97 Aligned_cols=327 Identities=32% Similarity=0.518 Sum_probs=296.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 001980 8 GCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDP 87 (987)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 87 (987)
++...+..++.++++++|++++.+|.+|+|.+++++.+......|+..++..+..+..++.+.+|+.++++.+++.....
T Consensus 225 ~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~ 304 (569)
T PRK10789 225 PTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS 304 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC
Confidence 34445555667778899999999999999999998888888889999999999999999999999999998754321111
Q ss_pred CCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 001980 88 TNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK 167 (987)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 167 (987)
...+...+.|+++|++|+|+.. +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||+++.
T Consensus 305 ---~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~ 380 (569)
T PRK10789 305 ---EPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLT 380 (569)
T ss_pred ---CCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHh
Confidence 1112223569999999999753 346899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 168 TLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 168 ~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
+++..++|++|+|++|+|++|++|++|||.++.++.++++++++++.+++++++..+|+|++|.+|++|.+||||||||+
T Consensus 381 ~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi 460 (569)
T PRK10789 381 KLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRI 460 (569)
T ss_pred hCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHH
Confidence 99999999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhh
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+||||++++|+++|||||||+||+++++.+.+.|+++.+++|+|+||||++.++.+|+|++|++|++++.|+|+++++++
T Consensus 461 ~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 461 SIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcC
Confidence 99999999999999999999999999999999999887899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 001980 328 GAYASLIRFQE 338 (987)
Q Consensus 328 ~~~~~~~~~~~ 338 (987)
+.|++++..++
T Consensus 541 ~~y~~l~~~~~ 551 (569)
T PRK10789 541 GWYRDMYRYQQ 551 (569)
T ss_pred ChHHHHHHHhh
Confidence 99999887654
No 93
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6.4e-55 Score=567.54 Aligned_cols=544 Identities=19% Similarity=0.206 Sum_probs=406.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 418 EWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTR 497 (987)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (987)
.++.++..++..++..++....++++..++..+...+ ........+++.++++.++..++.....+...+.+.++...
T Consensus 242 ~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~--~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~ 319 (1560)
T PTZ00243 242 LPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADN--ATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSA 319 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666666666766665432111 11000111222222333334444444556667778888888
Q ss_pred HHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001980 498 VRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPL 577 (987)
Q Consensus 498 l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl 577 (987)
+...+|+++++.+...+..++...|+++|.++.|++.+...+. .+..++...+.+++++++++....+.+++.++++++
T Consensus 320 L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v 398 (1560)
T PTZ00243 320 LNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLV 398 (1560)
T ss_pred HHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999998877765556899999999999999999984 455666666666666666665544455555555555
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001980 578 LVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQF 657 (987)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (987)
++.+..+..+++....++...........+.|.++|+++||.+++|+.|.+++.+.-+...+...+......+...+...
T Consensus 399 ~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~ 478 (1560)
T PTZ00243 399 TLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNA 478 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555566666667777889999999999999999999999999887665555544444444443333333
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-----CCCC
Q 001980 658 ALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI-----DPDD 732 (987)
Q Consensus 658 ~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~-----~~~~ 732 (987)
...+..+ ..++.+.+..+.++++.+++++.++.....|+..+...+..+.++..+++|+.++++.++.. +..+
T Consensus 479 ~p~l~~~--~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~ 556 (1560)
T PTZ00243 479 TPTLMIA--VVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEE 556 (1560)
T ss_pred HHHHHHH--HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchh
Confidence 3322222 23456667788999999999999988888999988899999999999999999998754310 0000
Q ss_pred ---------C--C----------------CCC-------------------------CCCccccEEEEeEEEECCCC---
Q 001980 733 ---------P--D----------------AEP-------------------------VETIRGEIELRHVDFAYPSR--- 757 (987)
Q Consensus 733 ---------~--~----------------~~~-------------------------~~~~~g~I~f~~vsf~Y~~~--- 757 (987)
+ . ..+ .....+.+.++|++|.++..
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1560)
T PTZ00243 557 YWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASR 636 (1560)
T ss_pred hcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccc
Confidence 0 0 000 00012357788887765310
Q ss_pred ----------------------------------CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCce
Q 001980 758 ----------------------------------PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803 (987)
Q Consensus 758 ----------------------------------~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~ 803 (987)
.+.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~ 716 (1560)
T PTZ00243 637 HIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGR 716 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence 1235899999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 001980 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883 (987)
Q Consensus 804 I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 883 (987)
|.++ ++|+|+||+|.+|++||+|||.++.+ .++++..++++.+++.+.++.+|+|++|.++++|.+
T Consensus 717 i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~ 782 (1560)
T PTZ00243 717 VWAE-------------RSIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVN 782 (1560)
T ss_pred EEEC-------------CeEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCC
Confidence 9863 57999999999999999999998754 455678888999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEe
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA-LERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~-l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~ 962 (987)
||||||||++||||++++|+|+|||||||+||+.+.+.+.+. +....+++|+|+|||+++.+..||+|++|++|++++.
T Consensus 783 LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~ 862 (1560)
T PTZ00243 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFS 862 (1560)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999998877654 4445578999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHHh
Q 001980 963 GSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 963 Gt~~eLl~~~~g~f~~l~~~ 982 (987)
|+|+++++. +.|.++...
T Consensus 863 G~~~~l~~~--~~~~~~~~~ 880 (1560)
T PTZ00243 863 GSSADFMRT--SLYATLAAE 880 (1560)
T ss_pred cCHHHHHhC--hHHHHHHHh
Confidence 999999864 568877654
No 94
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-58 Score=489.26 Aligned_cols=322 Identities=41% Similarity=0.621 Sum_probs=293.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 001980 12 GIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGR 91 (987)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~ 91 (987)
.+...+...+...+..-+..|.+|.|++...-.++.....|+..+......+.+++.-+++.++.++.+.+....+....
T Consensus 175 ~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~ 254 (497)
T COG5265 175 AIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPP 254 (497)
T ss_pred HHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCcc
Confidence 33444445555667777889999999988888888888899999999999999999999999999987665433221111
Q ss_pred cCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH
Q 001980 92 CLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL 171 (987)
Q Consensus 92 ~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~ 171 (987)
..+...+.+.|+||+|.|.. .+++|+++||++++|+.+|||||||+||||++++|.++|++++|.|.+||+|+++...
T Consensus 255 L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq 332 (497)
T COG5265 255 LWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQ 332 (497)
T ss_pred ccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHH
Confidence 11134567999999999974 4679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
+.+|+.||.|||+..||++|+..||.+|.|..+.+++..+++.+.++++++.+|+|++|.+||+|-.||||||||+||||
T Consensus 333 ~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar 412 (497)
T COG5265 333 QSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIAR 412 (497)
T ss_pred HHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHH
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYA 331 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 331 (987)
+++++|+|++|||.||+||.++++.++..|++..+|+|.++|.||++++-.||.|+||++|+|+|.|+|++|++.+|.|+
T Consensus 413 ~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya 492 (497)
T COG5265 413 TILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYA 492 (497)
T ss_pred HHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 001980 332 SLIR 335 (987)
Q Consensus 332 ~~~~ 335 (987)
+++.
T Consensus 493 ~mw~ 496 (497)
T COG5265 493 EMWR 496 (497)
T ss_pred HHhc
Confidence 8873
No 95
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.5e-58 Score=499.38 Aligned_cols=316 Identities=31% Similarity=0.443 Sum_probs=290.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
..+++-.+-++....++..|+|+++.|++|+|.+++.-..+.-...|+-.....|.++..++.|++|+.++|...|...
T Consensus 245 ~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~- 323 (580)
T COG4618 245 FGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA- 323 (580)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-
Confidence 4455667777888899999999999999999998887666666667999999999999999999999999998765421
Q ss_pred CCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 86 DPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
.....+.+++.+.++++++.-|+. ++++++++||++++||.++||||||||||||.|+|.|.++|.+|.|++||.+
T Consensus 324 ---~~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~ 399 (580)
T COG4618 324 ---ERMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGAD 399 (580)
T ss_pred ---CCCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchh
Confidence 223445667889999999987654 5789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
+++++.+.+-++|||+||+-.||+|||+|||.-..++.+.+++.++++.++.||.|..+|+||||.+|+.|..|||||||
T Consensus 400 l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ 479 (580)
T COG4618 400 LRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ 479 (580)
T ss_pred hhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence 99999999999999999999999999999998766778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
||+||||||.||.+++||||-|+||.+.|..+.+.|...+ +|.|+|+||||++.+..+|+|++|++|++...|+.+|++
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999886 599999999999999999999999999999999999987
Q ss_pred Hh
Q 001980 325 AK 326 (987)
Q Consensus 325 ~~ 326 (987)
++
T Consensus 560 a~ 561 (580)
T COG4618 560 AK 561 (580)
T ss_pred HH
Confidence 64
No 96
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=7.7e-57 Score=541.08 Aligned_cols=328 Identities=39% Similarity=0.542 Sum_probs=295.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 001980 7 LGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQD 86 (987)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 86 (987)
..+..++..++.++++++|++++.+|.+++|.+++++.++.....|+..+...+..+..++.+.+|+.++++.+++....
T Consensus 243 ~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 322 (585)
T TIGR01192 243 SGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP 322 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Confidence 34455566677788889999999999999999998888888888899999999999999999999999999865432111
Q ss_pred CCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 87 PTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
. .....+...+.++++|++|+|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++
T Consensus 323 ~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 399 (585)
T TIGR01192 323 A-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI 399 (585)
T ss_pred c-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEh
Confidence 1 111111223469999999999743 3489999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHH
Q 001980 167 KTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 167 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqR 246 (987)
.+++.+++|++++||+|+|++|++|++|||.++.++.++++++++++.+++++++..+|+|++|.+|++|.+||||||||
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qr 479 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQR 479 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999988778899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
++|||||+++|+++|||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|++++.|+|++++++
T Consensus 480 l~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 480 LAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC
Confidence 99999999999999999999999999999999999988789999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHH
Q 001980 327 AGAYASLIRFQ 337 (987)
Q Consensus 327 ~~~~~~~~~~~ 337 (987)
++.|++++..+
T Consensus 560 ~~~y~~l~~~~ 570 (585)
T TIGR01192 560 DGRFYKLLRRS 570 (585)
T ss_pred CChHHHHHHhC
Confidence 99999888654
No 97
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.8e-57 Score=541.90 Aligned_cols=289 Identities=32% Similarity=0.493 Sum_probs=259.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
..++..++..++.++++|+|++++.+|.+++|.+++++++......|+..+...+..+.+++.+.+|+.++++.+++...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (529)
T TIGR02868 240 GAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPE 319 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCC
Confidence 34556667777778888999999999999999999888888888899999999999999999999999999987654221
Q ss_pred CCCC-CCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 001980 86 DPTN-GRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV 164 (987)
Q Consensus 86 ~~~~-~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~ 164 (987)
.... ........+.|+++||+|+|+++ .++|+|+||++++||+++||||||||||||+++|+|+++|++|+|.+||+
T Consensus 320 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~ 397 (529)
T TIGR02868 320 GVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGV 397 (529)
T ss_pred CCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 1110 00111123469999999999753 35899999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 165 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 165 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
|++++ .+++|++|+||||+|++|++||+|||.+|.|+.++++++++++.+++++++..+|+|+||.+||+|.+||||||
T Consensus 398 ~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQr 476 (529)
T TIGR02868 398 SVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGER 476 (529)
T ss_pred EhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHH
Confidence 99999 99999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCC
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 297 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~ 297 (987)
|||+|||||+++|+|+|||||||+||+++++.+++.+.++.+++|+|+||||+
T Consensus 477 QRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 477 QRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999888899999999995
No 98
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.8e-56 Score=535.32 Aligned_cols=314 Identities=32% Similarity=0.450 Sum_probs=283.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 001980 7 LGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQD 86 (987)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 86 (987)
.++..++..++.++++++|++++.+|.+|+|.+++++.++.....|+..+...+..+.+++.+.+|+.++++.+++...
T Consensus 228 ~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~- 306 (544)
T TIGR01842 228 SNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP- 306 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC-
Confidence 3444555566677788999999999999999999988888888899999999999999999999999999976543211
Q ss_pred CCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 87 PTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
. ...+...+.++++|++|+|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++
T Consensus 307 ~---~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i 382 (544)
T TIGR01842 307 A---MPLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADL 382 (544)
T ss_pred C---CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeh
Confidence 1 1112223469999999999743 34689999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHH
Q 001980 167 KTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 167 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqR 246 (987)
.+++.+++|++++||||+|++|++|++|||.++.++.++++++++++.++++++++.+|+|++|.+|++|.+||||||||
T Consensus 383 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qr 462 (544)
T TIGR01842 383 KQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQR 462 (544)
T ss_pred hhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHH
Confidence 99999999999999999999999999999998777678899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
++||||++++|+++|||||||+||+++++.+.+.+.++. +++|+|++|||++.++.||+|++|++|++++.|+|+++++
T Consensus 463 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 463 IALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999999999999885 5899999999999988899999999999999999999864
No 99
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=5.3e-55 Score=522.22 Aligned_cols=296 Identities=36% Similarity=0.515 Sum_probs=263.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001980 10 TYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTN 89 (987)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~ 89 (987)
..++..+..+++++++++.+..|.+++|.+++++.+......|+..+...+..+.+++.+++|+.++++.+++... ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~~- 311 (529)
T TIGR02857 234 LELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-KA- 311 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-Cc-
Confidence 3344445555555667777779999999998888888788889999999999999999999999999975432111 11
Q ss_pred CCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC
Q 001980 90 GRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL 169 (987)
Q Consensus 90 ~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~ 169 (987)
.......+.|+++||+|+|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+|++++
T Consensus 312 -~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~ 389 (529)
T TIGR02857 312 -PVTAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA 389 (529)
T ss_pred -CCCCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhC
Confidence 1111122469999999999854 24689999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 170 QLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 170 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
+.+++|++|+||+|+|++|++||+|||.++.++.++++++++++.++++++++.+|+|+||.+|++|.+||||||||++|
T Consensus 390 ~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~l 469 (529)
T TIGR02857 390 DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLAL 469 (529)
T ss_pred CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHH
Confidence 99999999999999999999999999999988788899999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEE
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVI 309 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l 309 (987)
|||++++|+++|||||||+||+++++.+.+.+.++.+++|+|+||||++.++.||+|++|
T Consensus 470 aRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 470 ARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999999987899999999999999999999985
No 100
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.9e-55 Score=473.93 Aligned_cols=237 Identities=23% Similarity=0.424 Sum_probs=223.8
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
|.|+|+|++++|++. +.++|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|+|||+++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 579999999999643 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
|+||||+|.+|++|+++|+++.. ..++++++++++.+++.+++..+|+++++.++++|.+||||||||+||||||+++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999997543 36789999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHh
Q 001980 903 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~ 982 (987)
+||||||||++||+.+++.+++.|++.++++|+|+||||++++..||||+||++|+++|.|+|++|+++ .+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999999999999999999999999998889999999999999999999999999999999999999996 6889998865
Q ss_pred h
Q 001980 983 Q 983 (987)
Q Consensus 983 q 983 (987)
.
T Consensus 237 ~ 237 (275)
T cd03289 237 S 237 (275)
T ss_pred c
Confidence 4
No 101
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-53 Score=413.94 Aligned_cols=218 Identities=33% Similarity=0.545 Sum_probs=189.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC-CCHHHHhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT-LQLRWLRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~-~~~~~~~~~ 177 (987)
.|+++|++++|++ ..+|+|||++|++||.++|+|||||||||||++|.|+-+|++|+|.++|.++.. .+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3899999999984 349999999999999999999999999999999999999999999999987743 377889999
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+|+|+|+..||+- ||.||+.++.-. .+.++..+. +.+.++.. |+.......+.+|||||||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~-----A~~lL~~V--GL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHH-----HHHHHHHc--CchhhhhhCccccCcHHHHHHHHHHHH
Confidence 9999999999976 999999987421 122222211 12334443 666666777789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+.+|+++|+|||||||||+....+.+.++++. .|.|.|+|||.+.+++. ||||+.|++|+|+++|+++++..+
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999986 58999999999999998 799999999999999999998765
No 102
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=4.3e-50 Score=480.18 Aligned_cols=288 Identities=21% Similarity=0.288 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCC-CC-CCC---
Q 001980 19 ALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPS--IIQD-PT-NGR--- 91 (987)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~--~~~~-~~-~~~--- 91 (987)
++++|++++. +.++.|.+++++.+......|+..+...+..++.++.+++|+.++++.+++ .... +. ...
T Consensus 253 ~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~ 329 (555)
T TIGR01194 253 GCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLL 329 (555)
T ss_pred HHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccc
Confidence 3344444433 689999999988888888899999999999999999999999999863211 1000 00 000
Q ss_pred cCCCCCccEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC
Q 001980 92 CLDEVNGNIEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL 169 (987)
Q Consensus 92 ~~~~~~~~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~ 169 (987)
........|+++||+|+|++.+ ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.+++++
T Consensus 330 ~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~ 409 (555)
T TIGR01194 330 AHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSAD 409 (555)
T ss_pred ccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC
Confidence 0111235699999999997532 23589999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 170 QLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 170 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
+..++|++++||+|+|++|++|+++|+ .++.++++++++++.+++++++..+|+|++|. .+||||||||++|
T Consensus 410 ~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlal 481 (555)
T TIGR01194 410 SRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLAL 481 (555)
T ss_pred CHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHH
Confidence 999999999999999999999999995 35567788999999999999999999999994 6899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHH-hh-hCCCeEEEEcCCCCccccCCEEEEEeCCEEEEe
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALD-RL-MVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET 317 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~-~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~ 317 (987)
|||++++|+|+|||||||+||+++++.+.+.+. .+ .+++|+|+||||++.++.||+|++|++|++++.
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999988764 34 358999999999999999999999999999864
No 103
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-50 Score=449.31 Aligned_cols=228 Identities=32% Similarity=0.544 Sum_probs=202.4
Q ss_pred CCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCC-
Q 001980 739 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIR- 812 (987)
Q Consensus 739 ~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~- 812 (987)
|+..+.|+|+|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.|||+|+.
T Consensus 75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 4566889999999999643 3469999999999999999999999999999999999997 57999999999997
Q ss_pred -CCCHHHHhcccEEEccccccccccHHHHhccCCC--CCCHHHH-----HHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 813 -RLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GATEAEV-----VEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 813 -~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~sd~ei-----~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
.+++..+|++++||||+|.+|++|+++||.++.. ..++++. .++++.++++ +++++.++++|.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW-------DEVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCc-------chhhhhhhCCcccC
Confidence 4566789999999999999999999999986532 2445544 4455666653 45567889999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
|||||||+|||||++++|+|||||||||+||+++.+.+++.|++.++++|+|+|||+++++.+ ||||+||++|+|+|.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999999889999999999999988 9999999999999999
Q ss_pred ChhHHhcCCCc
Q 001980 964 SHSELVSRPDG 974 (987)
Q Consensus 964 t~~eLl~~~~g 974 (987)
+|++++..+..
T Consensus 307 ~~~~l~~~~~~ 317 (329)
T PRK14257 307 ETKTIFIHPKN 317 (329)
T ss_pred CHHHHhcCCCc
Confidence 99999887553
No 104
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=9.2e-50 Score=436.25 Aligned_cols=194 Identities=30% Similarity=0.424 Sum_probs=164.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
-|.|+||+|.|++.+ ..+++++|-|.++++||+|||||+|||||++++.+...|+.|.|.-.-. -++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccc
Confidence 599999999997654 5899999999999999999999999999999999999999999866532 223
Q ss_pred EEEccc---cccccccHHHHhccCCCC-CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 824 GLVQQE---PALFAASIFDNIAYGKEG-ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 824 ~~VpQd---p~lF~gTIreNL~~~~~~-~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
++.-|. ...++-|.-+++..-.++ -..+++...+.+.|+..-.+ +.+++ +||+|||.||+.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q------~~p~~----~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQ------VVPMS----QLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccc------ccchh----hcccccchhHHHHHHHh
Confidence 344443 345677888888765554 66788889999999975433 34443 69999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQ 962 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~ 962 (987)
++|.||||||||++||.++-....++|.++ ..+||+|+|+...|.. +++|.+.++|.+...
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 999999999999999999999999999986 4599999999999987 599999999988764
No 105
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-50 Score=397.47 Aligned_cols=218 Identities=31% Similarity=0.565 Sum_probs=194.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC-CCCHHHHhcc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR-RLNLKSLRLK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~-~i~l~~lR~~ 822 (987)
-|+++||+.+|. +..||+|||++|++||+++|+||||||||||+++|.++-+|++|+|.|||.++. ..++..+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 489999999995 346999999999999999999999999999999999999999999999998773 3378899999
Q ss_pred cEEEcccccccc-ccHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 823 IGLVQQEPALFA-ASIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 823 i~~VpQdp~lF~-gTIreNL~~~~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
+|+|+|+..||. -|+.||+.++.- ..+. +.-.+.|+++++.+..+.-| ..|||||+||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 999999999996 699999987631 1222 23456778899988887776 4699999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
||||.-+|+++++|||||||||+.-..+.+.++++. .|.|+|+|||.+...++ +|||+.||+|+|+|+|+|+++..+|
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999999987 57899999999999988 5999999999999999999999987
Q ss_pred Cch
Q 001980 973 DGA 975 (987)
Q Consensus 973 ~g~ 975 (987)
...
T Consensus 228 ~~~ 230 (240)
T COG1126 228 KSE 230 (240)
T ss_pred CCH
Confidence 654
No 106
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-50 Score=415.11 Aligned_cols=220 Identities=40% Similarity=0.643 Sum_probs=194.2
Q ss_pred EEEEeEEEECCCC--CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC---HHHH
Q 001980 745 IELRHVDFAYPSR--PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSL 819 (987)
Q Consensus 745 I~f~~vsf~Y~~~--~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---l~~l 819 (987)
|+|++||+.|+.. +...+|+||||+|++||..||+|+||||||||++++.++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999753 1246999999999999999999999999999999999999999999999998887766 5567
Q ss_pred hcccEEEcccccccc-ccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 820 RLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 820 R~~i~~VpQdp~lF~-gTIreNL~~~~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
|++||+|+|++.|++ .|+.+|+.|+.. ..+.+ .+.+.|+.+|+.|+...-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 899999999999997 899999998743 23333 4566777888877765544 58999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+|||||..+|+||+.|||||||||+|-+.|.+.|++.- -|-|+++|||-++.+++ |||+.||++|+|+|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998764 37899999999999987 8999999999999999999999
Q ss_pred cCCCch
Q 001980 970 SRPDGA 975 (987)
Q Consensus 970 ~~~~g~ 975 (987)
.+|...
T Consensus 231 ~~Pk~~ 236 (339)
T COG1135 231 ANPKHA 236 (339)
T ss_pred cCcchH
Confidence 887543
No 107
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-50 Score=401.19 Aligned_cols=218 Identities=34% Similarity=0.540 Sum_probs=190.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++||||+|.+ ..+++|+||+|++||+++++|||||||||+||+|.++++|++|+|++||+++++++..++|++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 789999999973 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcc--cccCCCCCCChHHHHHHHHHHHhc
Q 001980 180 LVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYST--QVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t--~~~~~g~~LSgGqkqRialARal~ 254 (987)
||-|+.-||+. ||.|||.+-..- .+.+++.+. ..+.+..+ |++. ...+.+.+|||||+|||.+||||+
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r-----~~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR-----ADELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 99999999976 999999975331 122222221 22333333 5542 456778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
.+|+|+|+||||+||||.++..+++.+.++.+ ++|+|+||||+++.-+ +|||.+|++|+|+..+++++++.+.
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 99999999999999999999999999988864 8999999999998655 8999999999999999999998764
No 108
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-50 Score=413.47 Aligned_cols=223 Identities=38% Similarity=0.588 Sum_probs=190.9
Q ss_pred EEEEeEEEECCCC--CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HH
Q 001980 100 IEFKNVTFSYPSR--PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WL 174 (987)
Q Consensus 100 i~~~~~~~~y~~~--~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~ 174 (987)
|++++|++.|+.. ....+|+||||+|++||+.+|||+||+|||||++++.++-.|++|+|.+||.++..++.. ..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999852 235699999999999999999999999999999999999999999999999999888654 56
Q ss_pred hcceEEEcCCCCCch-hcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 175 RDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 175 ~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
|++||+++|++.|++ .||.+|+.|..+-....+-+...+. .+.++.. |+....+..+.+|||||||||+|||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV---~elLelV--gL~dk~~~yP~qLSGGQKQRVaIARAL 156 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRV---AELLELV--GLSDKADRYPAQLSGGQKQRVAIARAL 156 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHH---HHHHHHc--CChhhhccCchhcCcchhhHHHHHHHH
Confidence 789999999999997 5999999997542221111111112 2233333 666677788889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+.+|+|||.|||||||||++.+.|.+.|+++. .|.|+++|||.++.++. ||||.||++|+++|+|+..+++.+.
T Consensus 157 a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 157 ANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 99999999999999999999999999999885 38999999999999988 8999999999999999999998764
No 109
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-49 Score=386.65 Aligned_cols=220 Identities=35% Similarity=0.567 Sum_probs=198.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC-----ceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA-----GKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~-----G~I~idG~di~~--i~l 816 (987)
.++++|+++.|. +..+|+|||++|++++.+|++|||||||||++++|.|+.+..+ |+|.+||.||-+ ++.
T Consensus 7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 589999999995 3459999999999999999999999999999999999999876 999999999975 678
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
-.||+++|+|+|.|.-|..||+||+.+|.. ..-|+-++++|+.|.|||-+.. .| .+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL----~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RL----HKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---Hh----hCCccCCChhHHH
Confidence 899999999999999999999999998832 1224557899999999998864 33 4556679999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
||||||||.-+|+||+||||||+|||.+...|.+.|.++.++-||++|||.+.-... +|+...+-.|++||+|.-+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999999999999999987655 6999999999999999999999
Q ss_pred cCCC
Q 001980 970 SRPD 973 (987)
Q Consensus 970 ~~~~ 973 (987)
.+|.
T Consensus 237 ~~P~ 240 (253)
T COG1117 237 TNPK 240 (253)
T ss_pred cCcc
Confidence 8864
No 110
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-49 Score=382.86 Aligned_cols=219 Identities=32% Similarity=0.486 Sum_probs=196.6
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-----cEEEECCEeCCC--CC
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA-----GHVLLDNVDIKT--LQ 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~-----G~i~~~g~~~~~--~~ 170 (987)
..++++|+++.|++ ..+|+|||++|++++++|++|||||||||||+++.++.+... |+|.++|+++.+ .+
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 35899999999984 349999999999999999999999999999999999988765 999999999966 57
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPE------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
...+|++||+|+|.|.-|+.||+||+.+|... .-++.++++++.+.+++.+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 88999999999999999999999999998431 123557788888888886643 35667788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+-+|+|||||||||||||.+...|.+.+.++++.-|||+|||+++...+ .|+..++..|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999989999999999999877 599999999999999999998
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
..+
T Consensus 236 F~~ 238 (253)
T COG1117 236 FTN 238 (253)
T ss_pred hcC
Confidence 764
No 111
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.3e-47 Score=410.42 Aligned_cols=236 Identities=49% Similarity=0.792 Sum_probs=218.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|+.+ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999642 246999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
|+||++.+|+.|+++||.++.+..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999876554566777888888999999999999999998888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHh
Q 001980 905 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 905 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~ 982 (987)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++++++.+ .+.|+.+++.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~~ 236 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQL 236 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHhc
Confidence 9999999999999999999999998778999999999999988999999999999999999999987 7888887753
No 112
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.1e-47 Score=414.92 Aligned_cols=235 Identities=24% Similarity=0.395 Sum_probs=216.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|.++..++...+|++|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 48999999999643 2458999999999999999999999999999999999997 799999999999988988999999
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
+|+||+|++|++|+++|+....+ .+.++++++++.+++.+++..+|.++++.++++|.+||||||||++|||||+++|+
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999964322 35678888999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHH
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRF 336 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 336 (987)
|+||||||++||+.++..+.+.|.+...++|+|+|||+++.+..||||++|++|++++.|+++++++..+.|+++...
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 999999999999999999999999877789999999999998889999999999999999999999977777666643
No 113
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.2e-47 Score=412.57 Aligned_cols=242 Identities=33% Similarity=0.517 Sum_probs=224.1
Q ss_pred CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH
Q 001980 740 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 740 ~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l 819 (987)
...|.|+++|++++|++. +.++|+|+||+|+|||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 356789999999999642 2459999999999999999999999999999999999999999999999999999998899
Q ss_pred hcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 820 RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 820 R~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
|++++|+||+|.+|++|+++|+.+.. ...+++++++++.+++.+++..+|.|+++.+++.+.+||+|||||++|||||+
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999997542 23566788899999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHH
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l 979 (987)
++|++|||||||++||+++.+.+.+.+++..+++|+|++||+++.+..||||++|++|++++.|+++++++.+++.|+.+
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 99999999999999999999999999998777899999999999999999999999999999999999998877889988
Q ss_pred HHhh
Q 001980 980 LQLQ 983 (987)
Q Consensus 980 ~~~q 983 (987)
+..+
T Consensus 253 ~~~~ 256 (257)
T cd03288 253 VRTD 256 (257)
T ss_pred Hhcc
Confidence 8654
No 114
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-48 Score=388.14 Aligned_cols=221 Identities=35% Similarity=0.575 Sum_probs=197.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+|+|||++|. +..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccccc-ccHHHHhccCC--CCCC----HHHHHHHHHHcCch--hhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGK--EGAT----EAEVVEAARAANVH--GFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~--~~~s----d~ei~~al~~a~l~--~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
||-|.--||. .||.+||..-. ...+ ++.+.+.++.+++. +|..+.| ..|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 9999999995 79999997421 1223 44566778888886 4666666 46999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhHHhcCC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti-~~~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|||..+|+||+||||.+|||+-+...+|+-+.+..+ ++|+|+|||+++.. +-+|||.||++|+|+.+|+|++++++|
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999988654 79999999999875 568999999999999999999999998
Q ss_pred CchHHHH
Q 001980 973 DGAYSRL 979 (987)
Q Consensus 973 ~g~f~~l 979 (987)
...|-+-
T Consensus 228 an~FV~~ 234 (309)
T COG1125 228 ANDFVED 234 (309)
T ss_pred cHHHHHH
Confidence 8777543
No 115
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=9.4e-47 Score=451.46 Aligned_cols=254 Identities=24% Similarity=0.319 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEE
Q 001980 46 AIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFF 125 (987)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i 125 (987)
.+....|+..+...+..++.++.+++|+.++++.+++... . .....+ ..+.++++|++|+|+++ .++|+|+||++
T Consensus 272 ~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~-~-~~~~~~-~~~~i~~~~v~f~y~~~--~~~l~~i~~~i 346 (547)
T PRK10522 272 LLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF-P-RPQAFP-DWQTLELRNVTFAYQDN--GFSVGPINLTI 346 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-c-cccccC-cCceEEEEEEEEEeCCC--CeEEecceEEE
Confidence 3334578999999999999999999999999764332111 1 111111 12469999999999743 35899999999
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCH
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATM 205 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 205 (987)
++||+++|+||||||||||+++|+|+++|++|+|.+||+++++++..++|++|+||+|+|++|++|++|| + +..++
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~ 422 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANP 422 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 2 23444
Q ss_pred HHHHHHHHHHhHHHHHHhCCCCCcccccC---CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHH
Q 001980 206 AEVEAAASAANAHSFITLLPNGYSTQVGE---RGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALD 282 (987)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~---~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~ 282 (987)
+++.++++..++.+ .+..++ +|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.
T Consensus 423 ~~~~~~~~~~~l~~---------~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~ 493 (547)
T PRK10522 423 ALVEKWLERLKMAH---------KLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLL 493 (547)
T ss_pred HHHHHHHHHcCCch---------hhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 55555554444333 332333 378999999999999999999999999999999999999999999987
Q ss_pred hhh--CCCeEEEEcCCCCccccCCEEEEEeCCEEEEe
Q 001980 283 RLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET 317 (987)
Q Consensus 283 ~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~ 317 (987)
+.. .++|+|+||||++.++.||+|++|++|++++.
T Consensus 494 ~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 494 PLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 653 48999999999999999999999999999876
No 116
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.6e-46 Score=444.07 Aligned_cols=198 Identities=23% Similarity=0.396 Sum_probs=167.8
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC--CCceEEECCccCCCCCHHHHhcccEEEcccc-ccccc
Q 001980 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP--TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP-ALFAA 835 (987)
Q Consensus 759 ~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~i~l~~lR~~i~~VpQdp-~lF~g 835 (987)
.+..|+|||=-++||..+|++|+||||||||++.|.+-..- .+|+|+|||.+..+ +..++.+|||.|++ |+=.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 34689999999999999999999999999999999987542 47899999998876 67899999999977 55567
Q ss_pred cHHHHhccCC-----CCCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC-CEE
Q 001980 836 SIFDNIAYGK-----EGATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP-AIL 905 (987)
Q Consensus 836 TIreNL~~~~-----~~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p-~IL 905 (987)
||||-|.+.. .+.+++| +.++.+..++.++- |..||.-|..||..||.||.||--|+.|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999997642 2334443 45666666666554 44588888999999999999999999999 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchh--hhccCEEEEEe-CCEEEEecChh
Q 001980 906 LLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLST--IRGVDCIGVVQ-DGRIVEQGSHS 966 (987)
Q Consensus 906 lLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~t--i~~~D~Iivl~-~G~ive~Gt~~ 966 (987)
.||||||+||+++...|.+.+++.. .|+||++.-|.++. .+.+|+++.|+ +|+.|.+|+..
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 9999999999999999999999976 69999999999975 46789999996 57999998754
No 117
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.9e-47 Score=379.05 Aligned_cols=223 Identities=35% Similarity=0.562 Sum_probs=189.4
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HH
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WL 174 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~ 174 (987)
..|++++++|+|++ +.+++|+||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|+++.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 45999999999974 4599999999999999999999999999999999999999999999999999988764 56
Q ss_pred hcceEEEcCCCCCchh-cHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHHhCCCCCccc-ccCCCCCCChHHHHHHHH
Q 001980 175 RDQIGLVNQEPALFAT-TILENILYGKPEA---TMAEVEAAASAANAHSFITLLPNGYSTQ-VGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 175 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~t~-~~~~g~~LSgGqkqRial 249 (987)
|+++|+++|+..||+. ||+||+.|...+. ..+.+.+ .... .++.. |+... ....+.+||||+++|+||
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~-lv~~----KL~~V--GL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRE-LVLM----KLELV--GLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHH-HHHH----HHHhc--CCChhhhhhCchhhcchHHHHHHH
Confidence 8899999999999977 9999999853321 2222222 1111 12221 55544 344567999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||++.||+|+++|||||+|||.+...+.+.|++++. |.|+|+||||++.+.. ||||+++.+|+|+..|+++|+.+.
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999998864 8999999999999887 799999999999999999999886
Q ss_pred hhhH
Q 001980 327 AGAY 330 (987)
Q Consensus 327 ~~~~ 330 (987)
...|
T Consensus 237 d~P~ 240 (263)
T COG1127 237 DDPW 240 (263)
T ss_pred CCHH
Confidence 5443
No 118
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-46 Score=404.46 Aligned_cols=209 Identities=29% Similarity=0.403 Sum_probs=170.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.+++.+|+|.|+.++. +.+.++++.+..-+++++||++|+||||+++++.+-..|..|.+-+.+ |.+|
T Consensus 362 ~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 362 NLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred eeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 5999999999965432 689999999999999999999999999999999999999999998876 7899
Q ss_pred EEEccccccc-cccH--HHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 824 GLVQQEPALF-AASI--FDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 824 ~~VpQdp~lF-~gTI--reNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
+|-.|.-+=| +-.+ -+-+.--.|..+++|+++.|...|+..-+...+ + ..||||||-|+++|-....
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s------i----~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS------I----ASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc------c----cccCCcchhHHHHHHHhcC
Confidence 9999976533 2221 111111235569999999999998876554322 2 3599999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHHHH
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l 979 (987)
+|.+|||||||.+||.++-..+-++|+.+ +.-||+|||+.+.+.. |+.++|.++|+|... +-.-..|+++
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~i-------eg~~~~yKkl 570 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPI-------EGGIDKYKKL 570 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEee-------eccHHHHHHH
Confidence 99999999999999999999999999876 3479999999999976 799999999999763 1111246666
Q ss_pred HHhh
Q 001980 980 LQLQ 983 (987)
Q Consensus 980 ~~~q 983 (987)
...+
T Consensus 571 ~~~e 574 (582)
T KOG0062|consen 571 LGAE 574 (582)
T ss_pred HHHH
Confidence 6554
No 119
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-46 Score=416.37 Aligned_cols=277 Identities=25% Similarity=0.361 Sum_probs=214.4
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCccEEEEeEEEECCC
Q 001980 32 GVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPS 111 (987)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~ 111 (987)
+.+++..+|+.+..+.....++..++.. .....|+..++..++ .+..... ...+..+.|+++|++++|++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~i~~~nls~~y~~ 92 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLP-------KQKKAELKQFLNKKK-TQVDLLK--EDFNHANVFEIRNFNFWYMN 92 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhcc-------cccchhhhhcccccc-ccccccc--CCCCcCceEEEEeeEEEecC
Confidence 4566777777665444433333222111 112457777765432 1110000 01123357999999999974
Q ss_pred CCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CCHHHHhcceEEEcCC
Q 001980 112 RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQLRWLRDQIGLVNQE 184 (987)
Q Consensus 112 ~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~~~~~~~~~i~~v~Q~ 184 (987)
. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+...+|+.++||||+
T Consensus 93 ~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~ 171 (329)
T PRK14257 93 R-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQK 171 (329)
T ss_pred C-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecC
Confidence 3 3458999999999999999999999999999999999996 579999999999974 3456778899999999
Q ss_pred CCCchhcHHHHHhcCCCC--CCHHHH-----HHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 185 PALFATTILENILYGKPE--ATMAEV-----EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 185 ~~l~~~tv~eni~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
||+|++|++|||.|+... .+.++. ..+++.++ ++.++++.+++++.+||||||||++|||||+++|
T Consensus 172 ~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p 244 (329)
T PRK14257 172 PTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALSGGQQQRLCIARAIALEP 244 (329)
T ss_pred CccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 999999999999986421 222222 22233332 3445667899999999999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+||||||||++||+++...+.+.|.++.+++|+|+|||+++++.. ||||++|++|+|++.|+++++...
T Consensus 245 ~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 245 EVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999998878999999999999887 999999999999999999998754
No 120
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.1e-47 Score=394.75 Aligned_cols=214 Identities=35% Similarity=0.530 Sum_probs=188.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++|+|++ .++|+|+||++++||+++|+||||||||||||+|+|+++|.+|+|.++|+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3789999999984 4599999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCC-chhcHHHHHhcCCCCC----------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 179 GLVNQEPAL-FATTILENILYGKPEA----------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 179 ~~v~Q~~~l-~~~tv~eni~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
|||||++.. +.-||+|-+.+|+... +.+.+.++++..++.+ ...+...+||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~-----------la~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEH-----------LADRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHH-----------HhcCcccccChhHHHHH
Confidence 999999755 4569999999985321 1223445555554444 44555678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcc-ccCCEEEEEeCCEEEEecChHHHH
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
.|||||+++|+|++||||||+||...+.++++.++++. +|+|+|+|+||++.. +.||++++|++|+++.+|++++++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999986 389999999999876 559999999999999999999987
Q ss_pred Hh
Q 001980 325 AK 326 (987)
Q Consensus 325 ~~ 326 (987)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 65
No 121
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.6e-47 Score=383.29 Aligned_cols=199 Identities=36% Similarity=0.509 Sum_probs=168.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.+++++++++|++ ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999985 4599999999999999999999999999999999999999999999999887432 3479
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCCC--HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEAT--MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+||+|++.||+= ||+||+.++..... .++..+ .+.+.++.. |+...-+..+.+||||||||+||||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~-----~a~~~L~~V--gL~~~~~~~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE-----RAKELLELV--GLAGFEDKYPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHH-----HHHHHHHHc--CCcchhhcCccccChHHHHHHHHHHHHhc
Confidence 999999999986 99999999865321 111111 112333333 55555566677999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCC
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQG 312 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G 312 (987)
+|+||||||||+|||+.|+..+++.+.++. .++||++||||+++.-. +|||++|.++
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999998885 37999999999998765 8999999983
No 122
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=5e-46 Score=398.06 Aligned_cols=234 Identities=48% Similarity=0.800 Sum_probs=211.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 245899999999999999999999999999999999999999999999999988777777888999
Q ss_pred EEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 001980 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 259 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~i 259 (987)
|++|++++|+.|++||+.++.+....+++...++..++.+.+..+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999989999999986543444556666677777888899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHH
Q 001980 260 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI 334 (987)
Q Consensus 260 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 334 (987)
+||||||++||+.+++.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++....+.|..+.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 999999999999999999999998877899999999999998899999999999999999999988776665543
No 123
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-46 Score=397.21 Aligned_cols=233 Identities=58% Similarity=0.924 Sum_probs=214.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++. ..++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999643 235899999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
|+||++.+|..|++||+.++......+++.+.++..++.+++..+|.|+++........||+|||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999887655566777788888899999999999999999888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHH
Q 001980 905 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 905 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l 979 (987)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++..+ .+.|+.+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 233 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhhh
Confidence 9999999999999999999999998788999999999999988999999999999999999999876 5666543
No 124
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-46 Score=396.80 Aligned_cols=235 Identities=53% Similarity=0.839 Sum_probs=218.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 35899999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
|+||++.+|++|+++|+.++....+++++.++++.+++.+++..+|.|+++.+.....+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999887665677788888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHh
Q 001980 905 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 905 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~ 982 (987)
|||||||++||+++...+.+.|.+..++.|+|+++|+++.+..||++++|++|++++.|+++++..+ .+.|+.++..
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~~ 235 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKA 235 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHhc
Confidence 9999999999999999999999987668899999999999988999999999999999999999875 6778777654
No 125
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.7e-46 Score=392.83 Aligned_cols=221 Identities=35% Similarity=0.593 Sum_probs=207.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
|.|+++|++++|+.. +.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999643 2369999999999999999999999999999999999999999999999999998898899999
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
++|+||+|.+|++|++||+.+.. ....+++.++++..++.+++..+|.|+++..++.+.+||+|||||++|||||+++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998654 35678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 001980 903 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~ 965 (987)
++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 999999999999999999999999998778999999999999999999999999999998863
No 126
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=7.8e-46 Score=396.84 Aligned_cols=236 Identities=62% Similarity=1.002 Sum_probs=215.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++..+.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999996532346999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
|+||++.+|..|++||+.++......+++.+.++..++.+++..+|.|+++.......+||||||||++|||||+++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999887555566777888888899999999999999999888899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHH
Q 001980 905 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 981 (987)
Q Consensus 905 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~ 981 (987)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++... .+.++.++.
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 236 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLVK 236 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHhh
Confidence 9999999999999999999999987778999999999999988999999999999999999999875 555665553
No 127
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-45 Score=393.40 Aligned_cols=227 Identities=51% Similarity=0.879 Sum_probs=212.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
|.|+++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|.+|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 468999999999632 358999999999999999999999999999999999999999999999999998888889999
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
++|+||++.+|.+|+++|+.++.+...++++.++++..++.++++.+|.|+++.++.....||||||||++|||||+++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998876555677888888999999999999999999999889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 903 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999988778999999999999988999999999999999999988765
No 128
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=6.3e-46 Score=411.90 Aligned_cols=221 Identities=35% Similarity=0.598 Sum_probs=192.7
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---Hh
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR 820 (987)
|+++||+++|++.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cccEEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 821 LKIGLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 821 ~~i~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
++|+||||++.+|. .|+++|+.++.. ..+ ++.+.++++.+++.++....| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999995 799999986531 222 234667888888876654433 479999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||+.+|+|||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999999753 7899999999999965 89999999999999999999987
Q ss_pred CCCchH
Q 001980 971 RPDGAY 976 (987)
Q Consensus 971 ~~~g~f 976 (987)
++...+
T Consensus 231 ~p~~~~ 236 (343)
T TIGR02314 231 HPKTPL 236 (343)
T ss_pred CCCcHH
Confidence 765444
No 129
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-46 Score=403.19 Aligned_cols=213 Identities=33% Similarity=0.541 Sum_probs=187.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++.. +++|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|.+++++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~~---~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCce---eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 489999999998432 899999999999999999999999999999999999999999999999999999875 589
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCCC------HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEAT------MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
|+|+|+..||+. ||+|||.|+..... ++++.++++.. +++..+.+++.+|||||||||||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L-----------~l~~lL~r~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLL-----------GLEHLLNRKPLQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHc-----------CChhHHhcCcccCChhhHHHHHHHH
Confidence 999999999977 99999999865321 33444555444 4444555566799999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
||+++|+++|||||+|+||++.+..+...|+++.+ +.|+|+||||..++.. +|||.+|++|+|.+.|++.|+..+.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 99999999999999999999999999999988753 7899999999888765 8999999999999999999998654
No 130
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-46 Score=372.96 Aligned_cols=217 Identities=34% Similarity=0.551 Sum_probs=187.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---HHHHh
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ---LRWLR 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~~ 175 (987)
.|+++|+++.||+ ...+|+||||+|++||+++|+|+||||||||||+|.|+.+|++|+|.++|.++.... ...+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 356999999999999999999999999999999999999999999999999988776 45678
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCCC-----------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPEA-----------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
++|||++|++.|.+. ||.+|++.|.-.. +.++...+ .+.++.+ |+....-.+..+|||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~A------l~aLerv--gi~~~A~qra~~LSGGQ 152 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQA------LDALERV--GILDKAYQRASTLSGGQ 152 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHH------HHHHHHc--CcHHHHHHHhccCCcch
Confidence 899999999999876 9999999875321 12222211 2223333 55555666778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecCh
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTH 320 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 320 (987)
+|||+|||||+++|+|+|.|||+|+|||.+.+.+++.|++.. .|.|+|+.-|+++.++. ||||+-|++|+|+.+|+.
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999999999885 48999999999999865 899999999999999999
Q ss_pred HHHHH
Q 001980 321 EELIA 325 (987)
Q Consensus 321 ~~l~~ 325 (987)
+|+-+
T Consensus 233 ~el~~ 237 (258)
T COG3638 233 SELTD 237 (258)
T ss_pred hhhhH
Confidence 98644
No 131
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.7e-46 Score=386.84 Aligned_cols=214 Identities=34% Similarity=0.565 Sum_probs=192.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.++++|++|+|.+ .++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|++||.|+.+++.+++-+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3789999999963 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccc-ccccccHHHHhccCCCC-------CC--H-HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 824 GLVQQEP-ALFAASIFDNIAYGKEG-------AT--E-AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 824 ~~VpQdp-~lF~gTIreNL~~~~~~-------~s--d-~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+||||++ .-|.-||+|=+.+|+-. .+ | +.+.+|++..++.++..+. + ..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-------~----~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-------V----DELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-------c----cccChhHHHHH
Confidence 9999996 45677999999877421 12 3 3478889999999886542 3 35999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti-~~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
.|||||.++|+||+||||||+||......|++.+++.. +++|+|+|.|+++.. +.||++++|++|+|+.+|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999976 379999999999864 678999999999999999999988
Q ss_pred cC
Q 001980 970 SR 971 (987)
Q Consensus 970 ~~ 971 (987)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
No 132
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.7e-46 Score=353.90 Aligned_cols=210 Identities=35% Similarity=0.560 Sum_probs=188.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
+.+++|.|+|+..+ -..+++|++||++||+||||||||||+++|+|+..|.+|+|.++|+|....++.+ +-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence 56789999997432 4678999999999999999999999999999999999999999999998877754 4699
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 180 LVNQEPALFAT-TILENILYGKPE------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
+++|+..||.- ||++||.+|... ...+++..++..+++..+.+++|. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999976 999999999531 234678888999999999988886 899999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
|+++-+||+||||+|+|||.-++.+...+.++. ++.|+++|||+++.+.. +|+++++++|+|.++|+.+++....
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 999999999999999999999999999998885 48899999999999876 7999999999999999999887643
No 133
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8e-46 Score=377.57 Aligned_cols=209 Identities=36% Similarity=0.537 Sum_probs=173.1
Q ss_pred EEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HH-
Q 001980 100 IEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WL- 174 (987)
Q Consensus 100 i~~~~~~~~y~~~-~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~- 174 (987)
++++|+++.|... ....+|+++||+|++||+++|+|||||||||||++|.|+..|++|+|.++|.++..++.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 5789999999643 225689999999999999999999999999999999999999999999999999988753 33
Q ss_pred hcceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCccccc-CCCCCCChHHHHHHHHH
Q 001980 175 RDQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVG-ERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 175 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~-~~g~~LSgGqkqRialA 250 (987)
+++||||+|+..|++. |++|||.+... .....+..+ ...+.++.+ |+..... ..+.+||||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~-----~~~~l~~~l--gl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR-----AAEELLEVL--GLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHH-----HHHHHHHhc--CChhhhccCCchhcCHHHHHHHHHH
Confidence 4579999999999977 99999996321 111111111 111223333 5553343 66789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEeCCEEE
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVV 315 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~ 315 (987)
|||+.+|++++.||||++||.++.+.+++.+.++. .|+|+|+||||......|||++.|++|++.
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999984 389999999999999999999999999954
No 134
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.5e-46 Score=360.05 Aligned_cols=206 Identities=33% Similarity=0.514 Sum_probs=183.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~ 176 (987)
|+|+||+++|++. .++|+|+||+|++||++-|+||||||||||+|+|.+...|+.|+|.++|.|+..+.. -.+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999864 569999999999999999999999999999999999999999999999999987754 35899
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCC------CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKP------EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
+||+|+||..|... ||.||+.|... ..-.+++.++++.+++.+....+|. +||||||||++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 99999999998866 99999998643 1123566777777777777767765 899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccC-CEEEEEeCCEEEEec
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 318 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~-d~i~~l~~G~i~~~g 318 (987)
|||++.+|++||.||||.+|||.....|++.+.++. .|.||+++||+.+.+..+ -|++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999999999986 499999999999999886 789999999998654
No 135
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-46 Score=406.45 Aligned_cols=214 Identities=36% Similarity=0.534 Sum_probs=187.6
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..++++|++++|+ +..+++|+||+|++||+++++|||||||||||++|+|+..|++|+|.++|+++..++++. +.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~k--R~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK--RP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhh--cc
Confidence 3589999999998 345999999999999999999999999999999999999999999999999999998874 58
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCC---CCH----HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPE---ATM----AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
|++|+|+..||+- ||+|||.||... ... +++.++++.+++.+ .-.+++.+|||||||||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-----------~~~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-----------FADRKPHQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-----------hhhhChhhhChHHHHHHHH
Confidence 9999999999976 999999999651 111 24555555554444 4455667999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHHh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||||..+|++||||||+|+||.+-+..+...++++. .|.|.|+||||.++.- .+|||.+|++|+|...|+++|+...
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999998875 3999999999998865 4799999999999999999999876
Q ss_pred h
Q 001980 327 A 327 (987)
Q Consensus 327 ~ 327 (987)
.
T Consensus 228 P 228 (352)
T COG3842 228 P 228 (352)
T ss_pred c
Confidence 4
No 136
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-45 Score=370.16 Aligned_cols=226 Identities=31% Similarity=0.518 Sum_probs=191.0
Q ss_pred cEEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC-CHHHHhc
Q 001980 744 EIELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL-NLKSLRL 821 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i-~l~~lR~ 821 (987)
.++++|+++.|+.+.. .++|+||||+|.+||++||||+||||||||.++|.|+.+|++|+|++||.++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 4889999999975421 1499999999999999999999999999999999999999999999999777553 3446788
Q ss_pred ccEEEcccccc-cc--ccHHHHhccCC----CCCCHHHHHHHHHHcCchh-hHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 822 KIGLVQQEPAL-FA--ASIFDNIAYGK----EGATEAEVVEAARAANVHG-FVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 822 ~i~~VpQdp~l-F~--gTIreNL~~~~----~~~sd~ei~~al~~a~l~~-~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
.+.+|+|||.- ++ -||++-|.-+. -+..+.+++++++.+++.+ |..+.| ..||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 99999999962 22 36666554221 1234566999999999965 444444 469999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR--TTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~--TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||.-+|++||||||||+||...++.|++.+.+..+++ |.|+|||++..+.. ||||+||++|++||.++-.++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999999987654 99999999999977 89999999999999999999998
Q ss_pred CCCchHHHHH
Q 001980 971 RPDGAYSRLL 980 (987)
Q Consensus 971 ~~~g~f~~l~ 980 (987)
.+...|.+..
T Consensus 232 ~~~h~ytr~L 241 (252)
T COG1124 232 HPSHPYTREL 241 (252)
T ss_pred CCccHHHHHH
Confidence 8666777654
No 137
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.6e-46 Score=356.11 Aligned_cols=208 Identities=34% Similarity=0.562 Sum_probs=188.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---Hhc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LRL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR~ 821 (987)
|+|+||+.+|++. .++|+||||+|++||.+-++|||||||||++++|++...|+.|+|.++|.|++.++-++ ||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999865 46999999999999999999999999999999999999999999999999999887654 899
Q ss_pred ccEEEccccccc-cccHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 822 KIGLVQQEPALF-AASIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 822 ~i~~VpQdp~lF-~gTIreNL~~~~~--~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
+||+|+||..|+ +-|+.||++++.. .. -.+.+.++|+.++|.+-...+|. .|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 999999999876 5699999998742 22 24567889999999999999984 699999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhcc-CEEEEEeCCEEEEecCh
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~-D~Iivl~~G~ive~Gt~ 965 (987)
|||++.+|++||-||||-+||+++...|++.+.+.- .|.|||+.||+.+.+..+ -|++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999999865 589999999999999887 67999999999987654
No 138
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-45 Score=396.80 Aligned_cols=218 Identities=37% Similarity=0.619 Sum_probs=198.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|.+. .+|+|+||+|+.||.++|+|||||||||++++|.||.+|++|+|.|||.|++++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999532 2899999999999999999999999999999999999999999999999999999876 889
Q ss_pred EEEcccccccc-ccHHHHhccCCCC------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKEG------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~~------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
++|+|+..||. .||++||.|+... -.++++.++++..++...+++.| ..||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 99999999996 5999999987532 23567789999999999988877 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++++||||.|+||+.....+...|+++.+ +.|+|.|||+...++. +|||+||.+|+|.+.|+|.|+..+|.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999999988653 6899999999988765 79999999999999999999999987
Q ss_pred chHH
Q 001980 974 GAYS 977 (987)
Q Consensus 974 g~f~ 977 (987)
+.|-
T Consensus 227 n~fV 230 (338)
T COG3839 227 NLFV 230 (338)
T ss_pred chhh
Confidence 7664
No 139
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.7e-45 Score=364.91 Aligned_cols=226 Identities=32% Similarity=0.569 Sum_probs=197.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH---HHh
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLR 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~---~lR 820 (987)
.|++++|+++|.+ ..||+||||+|++||.+||+|+||||||||++++.|+..|++|+|.|+|.|+.+++-+ .+|
T Consensus 8 ~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5999999999953 3699999999999999999999999999999999999999999999999999998865 469
Q ss_pred cccEEEccccccccc-cHHHHhccCCCC---CCHHHHH----HHHHHcCchhh-HhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 821 LKIGLVQQEPALFAA-SIFDNIAYGKEG---ATEAEVV----EAARAANVHGF-VSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 821 ~~i~~VpQdp~lF~g-TIreNL~~~~~~---~sd~ei~----~al~~a~l~~~-i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
+++|+++|+..||+. ||+||+.++-.+ .+++++. ..++.+||..- .+..| ..||||.+.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 999999999999965 999999987543 3444443 45667777665 33334 5699999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
+||||||.-+|+||++|||||+|||.+...+-+.|+++.+ +.|+++|||+++++.. ||||+++.+|+|+-+|++++|
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988764 7899999999999877 599999999999999999999
Q ss_pred hcCCCchHHHHHHhh
Q 001980 969 VSRPDGAYSRLLQLQ 983 (987)
Q Consensus 969 l~~~~g~f~~l~~~q 983 (987)
.+.++...+++++..
T Consensus 234 ~~sd~P~v~qf~~G~ 248 (263)
T COG1127 234 LASDDPWVRQFFNGI 248 (263)
T ss_pred HhCCCHHHHHHhcCC
Confidence 998777777766543
No 140
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-45 Score=386.84 Aligned_cols=226 Identities=51% Similarity=0.869 Sum_probs=206.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++. .++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 48999999999732 3489999999999999999999999999999999999999999999999998877777788889
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
+|++|++++|+.|++||+.++.+.....++..+++..++.+.++.+|.|+++.++....+||||||||++|||||+.+|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998999999998765545566777777788888899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999988778999999999999888999999999999999998877543
No 141
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-45 Score=388.17 Aligned_cols=230 Identities=62% Similarity=0.944 Sum_probs=207.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++. +.++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999743 235899999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 001980 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 259 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~i 259 (987)
|++|++++|+.|++||+.++.+.....++...++..++.+.++.+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987654444566666777778888999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhH
Q 001980 260 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAY 330 (987)
Q Consensus 260 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 330 (987)
+||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++....+.|
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 230 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVY 230 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcch
Confidence 99999999999999999999999887789999999999999889999999999999999998887654443
No 142
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=8.2e-45 Score=384.23 Aligned_cols=220 Identities=45% Similarity=0.743 Sum_probs=203.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
|.|+++|++++|++. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 468999999999642 2469999999999999999999999999999999999999999999999999988887788899
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
++|+||++.+|..|++||+.++....+++++.++++..++.+.+..+|.|++|.+.....+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998765445666788889999999999999999999999888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEec
Q 001980 903 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~G 963 (987)
++|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999987668999999999988889999999999998764
No 143
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.5e-41 Score=387.83 Aligned_cols=473 Identities=16% Similarity=0.150 Sum_probs=354.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCh---HHHHHHHHhhHHHHHHHHHH
Q 001980 465 FVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNS---SLVAARLATDAADVKSAIAD 541 (987)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~---g~i~~r~s~D~~~i~~~l~~ 541 (987)
.+.+|..++.+..++...+.|+......+.-.-|-+.++++-+...-.|+-...-.. -..=.|+..|+..+-+.-..
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~ 167 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLD 167 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHH
Confidence 455666677777777777888877777777777777777777766533332211000 11226888998888776666
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001980 542 RISVILQNMTSLLTSFIVAF---------------IVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMI 606 (987)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (987)
....++.++++++...++++ .++..+.+++++.+++.-++.+...+.+.+.+-+..+.++.....
T Consensus 168 l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~ 247 (604)
T COG4178 168 LSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYS 247 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 66667777776666655554 222233333444444444444555666666677777777777777
Q ss_pred HHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHH
Q 001980 607 AGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIK 686 (987)
Q Consensus 607 ~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~ 686 (987)
+.-..++.+.|..|+.|+...++..+..+.......+.......+..+.....++..++-...+......|.+++|.++.
T Consensus 248 Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmq 327 (604)
T COG4178 248 LVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQ 327 (604)
T ss_pred HHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHH
Confidence 77788889999999999887777766665555544444444444444444444444455556666677899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCCCCCCCC--CCC---CCccccEEEEeEEEECCCCCC
Q 001980 687 VFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST--RIDPDDPDA--EPV---ETIRGEIELRHVDFAYPSRPD 759 (987)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~--~~~~~~~~~--~~~---~~~~g~I~f~~vsf~Y~~~~~ 759 (987)
...++.....+++.++...+.+..-.....|+.++.+... +.++..+.. ... ...+..|+|+|++..-|++
T Consensus 328 a~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-- 405 (604)
T COG4178 328 AVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-- 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--
Confidence 9999999999999999999999999999999988764322 111111111 000 1114679999999998754
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHH
Q 001980 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839 (987)
Q Consensus 760 ~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIre 839 (987)
.+.|+++||.|+|||.+-|.|+||||||||+++|.|+++-.+|+|.+=. -..+-|+||.|++-.||+||
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre 474 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLRE 474 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHH
Confidence 3689999999999999999999999999999999999999999987641 14588999999999999999
Q ss_pred HhccCCCC--CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 001980 840 NIAYGKEG--ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917 (987)
Q Consensus 840 NL~~~~~~--~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~ 917 (987)
=|+||... .+|+|+.++|.+++|.++++++.+ .+ .-..-||+|||||||+||.||++|++++|||||||||++
T Consensus 475 ~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~ 549 (604)
T COG4178 475 ALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-ED----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549 (604)
T ss_pred HHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cC----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChH
Confidence 99998764 899999999999999999998743 22 245679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEe
Q 001980 918 SECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQ 955 (987)
Q Consensus 918 te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~ 955 (987)
+|..+.+.+++...++|+|.|+||.....-.++.+-++
T Consensus 550 ~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 550 TEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999999999999998877777766554
No 144
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1e-44 Score=388.14 Aligned_cols=229 Identities=72% Similarity=1.085 Sum_probs=205.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|+++.|++..+.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997533346899999999999999999999999999999999999999999999999988777777777899
Q ss_pred EEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 001980 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 259 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~i 259 (987)
|++|++.+++.|++||+.++.+....++....++..++.+++..+|.|+++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999988999999987654444555666666777888889999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhh
Q 001980 260 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAG 328 (987)
Q Consensus 260 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 328 (987)
+||||||++||+.+++.+.+.|+++.+|+|+|++||+++.+..||++++|++|++++.|+.+++.....
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 229 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKG 229 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcCh
Confidence 999999999999999999999988777899999999999988899999999999999999888766543
No 145
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-44 Score=386.67 Aligned_cols=230 Identities=57% Similarity=0.854 Sum_probs=208.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999632 34899999999999999999999999999999999999999999999999998888777888899
Q ss_pred EEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 001980 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 259 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~i 259 (987)
|++|++++|+.|++||+.++.+......+...++..++.+.+..+|.|+++.+..++.+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987654455556666777788888899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHH
Q 001980 260 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYA 331 (987)
Q Consensus 260 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 331 (987)
+||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++......+.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~ 230 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYA 230 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHH
Confidence 999999999999999999999998866899999999999998899999999999999999988876544443
No 146
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-45 Score=376.65 Aligned_cols=210 Identities=30% Similarity=0.497 Sum_probs=180.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|+++ ++|+||||++++|++++|+||||||||||+|+|+|+++|++|+|.+.|.+.+.... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 48999999999743 49999999999999999999999999999999999999999999999987655432 3579
Q ss_pred EEEcCCC---CCchhcHHHHHhcCCCCC----------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 179 GLVNQEP---ALFATTILENILYGKPEA----------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 179 ~~v~Q~~---~l~~~tv~eni~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
|||||.. |-|+-||+|-+.+|.... +.+++.++++.+++.++ ..+...+|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~-----------~~r~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL-----------RDRQIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhh-----------hCCcccccCcHHHH
Confidence 9999965 668999999999984321 13566667766665543 34556689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
|+.|||||+++|++|+|||||+++|+.++..+++.|+++++ |+||++||||++.+.. +|+|+.|+ +++...|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999999974 9999999999998865 89999996 568899999998
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
.+.
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 764
No 147
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.9e-45 Score=378.53 Aligned_cols=215 Identities=39% Similarity=0.660 Sum_probs=195.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC-CCCHHHHhcc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR-RLNLKSLRLK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~-~i~l~~lR~~ 822 (987)
.|+++|++|+|+++ .++|+++||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.+++ ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999765 47999999999999999999999999999999999999999999999999998 5889999999
Q ss_pred cEEEcccc--ccccccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 823 IGLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 823 i~~VpQdp--~lF~gTIreNL~~~~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
+|+|+|+| .+|..||.+.+.|+.. ..+.+ .+.++++.+++.++.+.-| .+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999999 7999999999998753 23443 4677888888887754443 5799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|.+|..+|+|||||||||+||+...+.+.+.++++.+ ++|+|+|||+++.+.. |||++||++|+++.+|+|++++++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999864 4799999999999988 899999999999999999999876
No 148
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-45 Score=379.32 Aligned_cols=215 Identities=35% Similarity=0.590 Sum_probs=189.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC-CCCHHHHhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK-TLQLRWLRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~-~~~~~~~~~~ 177 (987)
.++++|++|+|++. .++|+|+||+|++|+.++|+|+||||||||++++.|+++|++|+|.++|.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999865 46999999999999999999999999999999999999999999999999988 4778889999
Q ss_pred eEEEcCCC--CCchhcHHHHHhcCCCCC--CHH----HHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 178 IGLVNQEP--ALFATTILENILYGKPEA--TMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 178 i~~v~Q~~--~l~~~tv~eni~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
||||+|+| .+|..||.|.+.||..+. ..+ ++.++++.+ |+.....+...+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~v-----------gl~~~~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELV-----------GLEELLDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHc-----------CchhhccCCccccCCcceeeHHh
Confidence 99999999 788999999999996532 222 333444444 44444556667999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|.+|+.+|++||||||||+||+..++.+.+.++++.+ |+|+|++|||++.+.. ||++++|++|+++.+|++.++.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999863 5899999999999876 999999999999999999888764
No 149
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-41 Score=358.43 Aligned_cols=475 Identities=20% Similarity=0.284 Sum_probs=354.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHH
Q 001980 465 FVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRIS 544 (987)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~ 544 (987)
++..+.++..+..+...+........+++...++|.++.++++.+|+.-+.+ .+.++++.++++|+.++. +-...++
T Consensus 50 ~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier--~~~~rlla~L~~Dvr~IS-f~~s~lp 126 (546)
T COG4615 50 VLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER--LGSARLLAGLTSDVRNIS-FAFSRLP 126 (546)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH--hcccchhhhhccccccee-ehHhhhH
Confidence 3444555555555666677778888999999999999999999999999975 799999999999999998 4455667
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHH
Q 001980 545 VILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQN 624 (987)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~ 624 (987)
.+.+..+.++++...+++.++++.+++++.+.+.++..++.....-+..+..+..+..+..+.+..++|.+.++..+--.
T Consensus 127 ~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~ 206 (546)
T COG4615 127 ELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERA 206 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHH
Confidence 78888888999999999999998888887777777777766666656566777777888889999999999988764322
Q ss_pred H--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001980 625 K--ILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETV 702 (987)
Q Consensus 625 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (987)
+ +.+.|....+...+...+............+.+.+......+|+...+. .-+.....+..+.+.+...|+.+.+
T Consensus 207 ~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~---w~st~~a~tivlvlLflr~pL~s~v 283 (546)
T COG4615 207 EYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLG---WASTNVAATIVLVLLFLRTPLLSAV 283 (546)
T ss_pred HHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHhhHHHHHH
Confidence 2 2222222222222211111111112233444555555555566655432 2233333445556666778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCC
Q 001980 703 SLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGAS 782 (987)
Q Consensus 703 ~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~s 782 (987)
...+.+.++..+.+++.++-..+...+-..+...| .. ..|+++||.|.|++.. --+..||++|++||.|-|+|.|
T Consensus 284 gilP~l~~AqvA~~kiakle~~~~~a~~~~~q~~p--~~-~~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~N 358 (546)
T COG4615 284 GILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFP--DW-KTLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGN 358 (546)
T ss_pred hhhhHHHHHHHHHHHHHHhhcCCccccCCCCCcCC--cc-cceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCC
Confidence 99999999999999998765432211111111111 22 3599999999997431 3578999999999999999999
Q ss_pred CCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCC-CCHHHHHHHHHHcC
Q 001980 783 GSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG-ATEAEVVEAARAAN 861 (987)
Q Consensus 783 GsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~-~sd~ei~~al~~a~ 861 (987)
||||||++++|.|+|.|++|+|++||.+++.=+++++|+-++-|+-|.+||+.++ +.+. ++++.+..-+++..
T Consensus 359 GsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLe 432 (546)
T COG4615 359 GSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLE 432 (546)
T ss_pred CCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998764 3333 66776666555554
Q ss_pred chhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEe
Q 001980 862 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVA 939 (987)
Q Consensus 862 l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~Ia 939 (987)
+....+ +.+|==++ ..||-|||.|+|+--|++-+.+|+++||=-+--||.=.+...+.+--.. .|+||+.||
T Consensus 433 l~~kts-l~d~~fs~-----~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIs 506 (546)
T COG4615 433 LAHKTS-LNDGRFSN-----LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS 506 (546)
T ss_pred Hhhhhc-ccCCcccc-----cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEe
Confidence 433322 22332222 3699999999999999999999999999999999999988877765443 499999999
Q ss_pred cCchhhhccCEEEEEeCCEEEEe
Q 001980 940 HRLSTIRGVDCIGVVQDGRIVEQ 962 (987)
Q Consensus 940 HRl~ti~~~D~Iivl~~G~ive~ 962 (987)
|+-.-...+||++.|++|+++|.
T Consensus 507 HDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 507 HDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred cCchhhhhHHHHHHHhcCceeec
Confidence 99999999999999999999986
No 150
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-44 Score=397.07 Aligned_cols=221 Identities=24% Similarity=0.437 Sum_probs=184.9
Q ss_pred cEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC-------
Q 001980 744 EIELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL------- 814 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i------- 814 (987)
.|+++|++|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999996421 23699999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHHhcccEEEcccc--ccccccHHHHhccCCC--CCCHHHHHHHHHHcCchhhHhhCCCcCC-CccCCC
Q 001980 815 ---------NLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAEVVEAARAANVHGFVSALPNAYK-TPVGER 880 (987)
Q Consensus 815 ---------~l~~lR~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd~ei~~al~~a~l~~~i~~lp~gld-t~vge~ 880 (987)
....+|++++||+|+| .+|++|+++|+.++.. ..++++..+ .+ .+++..+ |++ ......
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~~--~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---LA--KFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---HH--HHHHHHc--CCChhHhcCC
Confidence 3567899999999998 6899999999987532 233433321 11 1223322 332 234566
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhh-hccCEEEEEeCCE
Q 001980 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGR 958 (987)
Q Consensus 881 G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti-~~~D~Iivl~~G~ 958 (987)
+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+ ..||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 77899999999999999999999999999999999999999999998864 589999999999987 5699999999999
Q ss_pred EEEecChhHHhcC
Q 001980 959 IVEQGSHSELVSR 971 (987)
Q Consensus 959 ive~Gt~~eLl~~ 971 (987)
+++.|+|++++.+
T Consensus 254 i~~~g~~~~~~~~ 266 (320)
T PRK13631 254 ILKTGTPYEIFTD 266 (320)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999987654
No 151
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-44 Score=385.56 Aligned_cols=218 Identities=37% Similarity=0.600 Sum_probs=186.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH---HHHhc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL---KSLRL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l---~~lR~ 821 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999953 359999999999999999999999999999999999999999999999999987764 56789
Q ss_pred ccEEEccccccccc-cHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 822 KIGLVQQEPALFAA-SIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 822 ~i~~VpQdp~lF~g-TIreNL~~~~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
.++||||++.+|.+ |+++|+.++.. ..+. +++.++++..++.++... . ...||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL-------Y----PAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC-------C----hhhCCHHHHHHHH
Confidence 99999999999986 99999986521 1232 335566777766554332 2 2469999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||+++|+||||||||++||+.+...+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998753 7899999999998875 89999999999999999999986
Q ss_pred CCCchHH
Q 001980 971 RPDGAYS 977 (987)
Q Consensus 971 ~~~g~f~ 977 (987)
. ...|.
T Consensus 227 ~-~~~~~ 232 (235)
T cd03261 227 S-DDPLV 232 (235)
T ss_pred C-CChhh
Confidence 5 44443
No 152
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.7e-44 Score=385.96 Aligned_cols=236 Identities=32% Similarity=0.520 Sum_probs=211.3
Q ss_pred CCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh
Q 001980 96 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 96 ~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~ 175 (987)
..+.|+++|++++|+.. ...+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 35679999999999742 23589999999999999999999999999999999999999999999999999888888888
Q ss_pred cceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 176 DQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+.|+|++|+|++|++|++||+..... ...+++..+.+..++.+.+..+|.|+++.+++.+.+||||||||++|||||++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999975432 23455666777778888899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhh-hhHHHH
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA-GAYASL 333 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~ 333 (987)
+|+++||||||++||+.+++.+.+.+.++.++.|+|++||+++.+..||+|++|++|++++.|+++++.+.. +.+..+
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 999999999999999999999999998876789999999999999889999999999999999999987653 344443
No 153
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-45 Score=361.28 Aligned_cols=222 Identities=34% Similarity=0.565 Sum_probs=193.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC---HHHHh
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSLR 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---l~~lR 820 (987)
.|+++||+.+||+ +..+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.++..++ ++.+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999985 346999999999999999999999999999999999999999999999999998888 66789
Q ss_pred cccEEEcccccccc-ccHHHHhccCCCC-----------C---CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 001980 821 LKIGLVQQEPALFA-ASIFDNIAYGKEG-----------A---TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 885 (987)
Q Consensus 821 ~~i~~VpQdp~lF~-gTIreNL~~~~~~-----------~---sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 885 (987)
++||+|+|++.|-. -|+.+|+..|+-. . ......+||+++++.++.-. +..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCC
Confidence 99999999999875 5899999766421 2 23456788899999887643 345799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 001980 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQ 962 (987)
Q Consensus 886 gGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~ 962 (987)
|||+||++|||||.++|+|++-|||||+|||.+.+.|++.|++.. .|.|||+.-|.++..+. ||||+-|++|+|+-.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999865 57999999999999865 699999999999999
Q ss_pred cChhHHhcCCCchHHHHHH
Q 001980 963 GSHSELVSRPDGAYSRLLQ 981 (987)
Q Consensus 963 Gt~~eLl~~~~g~f~~l~~ 981 (987)
|+++||- +..+...|.
T Consensus 230 g~~~el~---~~~~~~iYg 245 (258)
T COG3638 230 GPASELT---DEALDEIYG 245 (258)
T ss_pred CChhhhh---HHHHHHHhc
Confidence 9999963 234444443
No 154
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.3e-44 Score=401.53 Aligned_cols=220 Identities=34% Similarity=0.553 Sum_probs=186.7
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHh
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~ 175 (987)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 24699999999999999999999999999999999999999999999999999887654 357
Q ss_pred cceEEEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 176 DQIGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
++|+|+||++.+|+ .|++||+.++... ....+..+ ...+.++.+ |+.......+.+||||||||++||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR-----KVTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 78999999999996 5999999985321 12222111 112233333 55556677788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+.+|++||||||||+||+.+++.+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~ 231 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence 9999999999999999999999999999999853 8999999999999866 899999999999999999998764
No 155
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.3e-44 Score=384.51 Aligned_cols=212 Identities=39% Similarity=0.629 Sum_probs=185.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccC-----CCCCceEEECCccCCCCC--HH
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY-----DPTAGKVMIDGKDIRRLN--LK 817 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~-----~p~~G~I~idG~di~~i~--l~ 817 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.++|.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 35999999999999999999999999999999999999 999999999999998776 66
Q ss_pred HHhcccEEEccccccccccHHHHhccCCCC---C----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 818 SLRLKIGLVQQEPALFAASIFDNIAYGKEG---A----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~gTIreNL~~~~~~---~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
.+|++++|+||++.+|..|++||+.++... . .++++.++++..++.+.....++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 788999999999999988999999864321 1 13456777888887665543321 3579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999998655899999999998865 899999999999999998764
No 156
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.5e-44 Score=382.10 Aligned_cols=219 Identities=53% Similarity=0.826 Sum_probs=200.1
Q ss_pred ccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHh
Q 001980 741 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 820 (987)
Q Consensus 741 ~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR 820 (987)
..|.|+++|++++|+++...++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45689999999999753234699999999999999999999999999999999999999999999999999888888888
Q ss_pred cccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 821 LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 821 ~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
++++|+||++.+|.+|+++|+.++.......++++..+...+.++++.+|.|+++.+.....+||||||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999987655445556666667788889999999899998999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEE
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~i 959 (987)
+|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998777899999999999988999999999975
No 157
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-45 Score=376.74 Aligned_cols=213 Identities=35% Similarity=0.517 Sum_probs=180.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE---eCCCCCHHHHh
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV---DIKTLQLRWLR 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~---~~~~~~~~~~~ 175 (987)
.|.++|+++.|+. ..+++|||++|+.||.+|+.|||||||||||++|+|+..|+.|.|.+||. |.+..... .
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--D 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--h
Confidence 3788999999974 34899999999999999999999999999999999999999999999999 55553332 3
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCC--------CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHH
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPE--------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqR 246 (987)
++||||+|+..||.- ||++||.||.+- ....++.+.++.+++...- ...+.+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la-----------~ryP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA-----------DRYPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh-----------hcCchhcChHHHHH
Confidence 579999999999965 999999999731 1123344444444443333 44566999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
|||||||...|++||||||+++||++.+..+.+.|.++.. |.|+++||||.++... ||||++|++|+|...|+++|+
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999988753 8999999999998755 899999999999999999999
Q ss_pred HHhh
Q 001980 324 IAKA 327 (987)
Q Consensus 324 ~~~~ 327 (987)
..+.
T Consensus 226 ~~~P 229 (345)
T COG1118 226 YDHP 229 (345)
T ss_pred hcCC
Confidence 7653
No 158
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-44 Score=372.38 Aligned_cols=217 Identities=30% Similarity=0.559 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++|+|.++ +||+||||+|++|+.+||+||||||||||+++++|+.+|++|+|.++|.++++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 59999999999643 59999999999999999999999999999999999999999999999998876543 5789
Q ss_pred EEEccccc---cccccHHHHhccCCCC----------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 824 GLVQQEPA---LFAASIFDNIAYGKEG----------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 824 ~~VpQdp~---lF~gTIreNL~~~~~~----------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
|||||... -|.-||+|=+.+|... .+.+++.+||+.+++.++.. .++|+ |||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-------r~i~~----LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-------RQIGE----LSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-------Ccccc----cCcHHHH
Confidence 99999663 4788999999876422 12478999999999998864 34664 9999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
|+.|||||+++|++|+|||||+++|+.++..+.+.|.++.+ |||||+|+|+++.+.. +|+|+.| +++++..|+|++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 99999999999999999999999999999999999999874 8999999999999876 7999988 5788999999999
Q ss_pred hcCCCchHHHHH
Q 001980 969 VSRPDGAYSRLL 980 (987)
Q Consensus 969 l~~~~g~f~~l~ 980 (987)
+.. ..+.+.+
T Consensus 226 ~~~--~~l~~~~ 235 (254)
T COG1121 226 LTE--ENLEKAF 235 (254)
T ss_pred cCH--HHHHHHh
Confidence 864 3344444
No 159
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.1e-44 Score=341.94 Aligned_cols=211 Identities=35% Similarity=0.566 Sum_probs=189.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|.+++|.|+|..-| =.++++|++||+|||+||||||||||++++.||..|.+|+|.|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56889999995332 468899999999999999999999999999999999999999999999887764 47799
Q ss_pred EEcccccccc-ccHHHHhccCCCC------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGKEG------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~~~------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
+++||..||. -||++|+.+|... ...+.+..++.++|+.++.++||+ .||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999996 5999999988531 235678899999999999999994 599999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
|+|+-+||+||||.|+||+.-.+.+...+.+.. ++.|+++|||.++.+.. +|+++++++|||++.|.-+++++.++
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 999999999999999999999999999998876 47899999999998765 79999999999999999999997744
No 160
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.8e-44 Score=364.56 Aligned_cols=206 Identities=38% Similarity=0.581 Sum_probs=176.4
Q ss_pred EEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---H-
Q 001980 745 IELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---L- 819 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---l- 819 (987)
++++||+..|..... .++|+++||+|++||.|||+||||||||||+++|.++..|++|.|.++|.|+..++-+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 679999999964322 36999999999999999999999999999999999999999999999999999998544 3
Q ss_pred hcccEEEcccccccc-ccHHHHhccCC--CCC----CHHHHHHHHHHcCchhhHh-hCCCcCCCccCCCCCCCChhHHHH
Q 001980 820 RLKIGLVQQEPALFA-ASIFDNIAYGK--EGA----TEAEVVEAARAANVHGFVS-ALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 820 R~~i~~VpQdp~lF~-gTIreNL~~~~--~~~----sd~ei~~al~~a~l~~~i~-~lp~gldt~vge~G~~LSgGQrQr 891 (987)
|++||+|+|+..|+. -|++||+.++. ... ..+...+.++..++.+... ..| ..||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 567999999999875 59999998531 111 2344566666777765544 333 4699999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEE
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVE 961 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive 961 (987)
+||||||+.+|+|++.||||.+||.+|.+.|++.+++.. .++|+|+|||+......|||++.|.+|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999985 3789999999999999999999999999543
No 161
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-44 Score=384.36 Aligned_cols=223 Identities=33% Similarity=0.530 Sum_probs=194.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC---CCCceEEECCccCCCCCHHHHh
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD---PTAGKVMIDGKDIRRLNLKSLR 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~l~~lR 820 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 359999999999999999999999999999999999985 6899999999999988888889
Q ss_pred cccEEEccccccccccHHHHhccCCC--------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 821 LKIGLVQQEPALFAASIFDNIAYGKE--------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 821 ~~i~~VpQdp~lF~gTIreNL~~~~~--------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
++++|+||+|.+|..|+++|+.++.. ...++++.++++.+++.+++..+ ..+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHH
Confidence 99999999999999999999976521 11233567778888886655432 2345568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
+|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999999877899999999999886 5899999999999999999999866
Q ss_pred CCchH
Q 001980 972 PDGAY 976 (987)
Q Consensus 972 ~~g~f 976 (987)
+...|
T Consensus 232 ~~~~~ 236 (246)
T PRK14269 232 PKQEK 236 (246)
T ss_pred CCcHH
Confidence 44333
No 162
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.3e-44 Score=377.74 Aligned_cols=219 Identities=35% Similarity=0.561 Sum_probs=201.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|+.. ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 48999999999743 23589999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
+|++|++.+++.|++||+.+... ...+++.++++..++.+.+..+|.|+++..++.+.+||||||||++|||||+.+|+
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred EEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999986543 34567777888888888999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecC
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 319 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 319 (987)
++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999998877899999999999998899999999999998775
No 163
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-44 Score=381.05 Aligned_cols=223 Identities=34% Similarity=0.602 Sum_probs=193.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccccccccccHHHHhccCCC--CCCHHHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 824 GLVQQEPALFAASIFDNIAYGKE--GATEAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 824 ~~VpQdp~lF~gTIreNL~~~~~--~~sd~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
+|+||++.+|..|+++|+.++.. ...++++.+.++..++. ++. ......||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA-----------TRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh-----------hCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999986532 12244566677776664 222 22345799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~ 977 (987)
+|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++..+...|.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 999999999999999999999999999875 37999999999999875 899999999999999999999876554565
Q ss_pred HHH
Q 001980 978 RLL 980 (987)
Q Consensus 978 ~l~ 980 (987)
+.+
T Consensus 229 ~~~ 231 (241)
T PRK14250 229 KLF 231 (241)
T ss_pred HHH
Confidence 544
No 164
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=8.7e-44 Score=376.39 Aligned_cols=219 Identities=43% Similarity=0.708 Sum_probs=198.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|++. ..++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 48899999999742 24589999999999999999999999999999999999999999999999998777776777889
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
+|++|++++++.|++||+.++.+....+++.+.++..++.+.+...|.|++|.+.....+||||||||++|||||+.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988899999988754444556677788888888888999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEec
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG 318 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g 318 (987)
++||||||++||+.++..+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999986568999999999988779999999999998654
No 165
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-44 Score=390.13 Aligned_cols=217 Identities=33% Similarity=0.565 Sum_probs=192.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999642123599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcccc--ccccccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 824 GLVQQEP--ALFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 824 ~~VpQdp--~lF~gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
+|+||+| .++..|+++||.++.. ..+ ++.+.++++.+++.++....| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 3667899999987532 122 345678888888877655443 47999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7999999999999888999999999999999999998765
No 166
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9e-44 Score=372.28 Aligned_cols=206 Identities=34% Similarity=0.575 Sum_probs=184.5
Q ss_pred CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH
Q 001980 740 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 740 ~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l 819 (987)
+..+.|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+
T Consensus 2 ~~~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 2 PEHGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 345679999999999642 2369999999999999999999999999999999999999999999999999998888889
Q ss_pred hcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 820 RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 820 R~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
|++++|+||+|.+|++|+++|+.+.. ..+++++.++++ +......|||||+||++||||++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~-~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~ 141 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFD-EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALL 141 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccC-CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999997643 345555555443 23456689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~ 965 (987)
++|++|||||||++||+++...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+|
T Consensus 142 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 142 KRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999998778999999999999988999999999999998875
No 167
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=3.4e-43 Score=426.02 Aligned_cols=263 Identities=19% Similarity=0.296 Sum_probs=220.1
Q ss_pred CccCHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---------CCCCC--------
Q 001980 32 GVTDGGKAFTA-IF---SAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ---------DPTNG-------- 90 (987)
Q Consensus 32 ~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---------~~~~~-------- 90 (987)
|.+|.|..+.. +. ++.....|+..+...+..++++.++.+|+.++++.+++... ...+.
T Consensus 358 g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (659)
T TIGR00954 358 LEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSN 437 (659)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 67888876552 22 24455789999999999999999999999999975332110 00000
Q ss_pred -----CcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 91 -----RCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 91 -----~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
.......+.|+++|++|+|+++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 438 ~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-- 513 (659)
T TIGR00954 438 LVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-- 513 (659)
T ss_pred ccccccccccCCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--
Confidence 0001123469999999999742 3589999999999999999999999999999999999999999999875
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCC-------CCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCC
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGK-------PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQ 238 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~ 238 (987)
+++++||||+|++|++|++|||.++. +..+++++.++++.+++.+++.. |.|++|..+ .+.+
T Consensus 514 ---------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~ 582 (659)
T TIGR00954 514 ---------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDV 582 (659)
T ss_pred ---------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccC
Confidence 46899999999999999999999874 23456788889999999988877 889999876 5779
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeC
Q 001980 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ 311 (987)
Q Consensus 239 LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~ 311 (987)
||||||||++|||||+++|+++|||||||+||+++++.+.+.+++. ++|+|+||||++.++.||++++|+.
T Consensus 583 LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999998774 8999999999999999999999973
No 168
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-44 Score=391.82 Aligned_cols=220 Identities=37% Similarity=0.605 Sum_probs=199.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+.+|. +..+++|+||+|++||.++++|||||||||++++|.||..|++|+|.+||.|+..++++ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 699999999995 44699999999999999999999999999999999999999999999999999999886 4889
Q ss_pred EEEcccccccc-ccHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
++|+|+..||. .||++|+.||.. ...+ +.+.++++.+++.++-.+.| ..|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 99999999995 799999999854 1222 36789999999999877766 46999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhHHhcCC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti-~~~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|||..+|++|+||||-|+||.+-...++..+++..+ |.|.|+|||+-+.. .-+|||+||.+|+|...|+|+|+..+|
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 999999999999999999999999999999988653 88999999999875 457999999999999999999999998
Q ss_pred CchHHHH
Q 001980 973 DGAYSRL 979 (987)
Q Consensus 973 ~g~f~~l 979 (987)
...|-.-
T Consensus 229 ~~~fVA~ 235 (352)
T COG3842 229 ATRFVAD 235 (352)
T ss_pred chHHHHH
Confidence 8777543
No 169
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-43 Score=397.60 Aligned_cols=223 Identities=39% Similarity=0.624 Sum_probs=190.1
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---Hh
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR 820 (987)
|+++||+++|+.+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996211 346999999999999999999999999999999999999999999999999999887654 57
Q ss_pred cccEEEcccccccc-ccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 821 LKIGLVQQEPALFA-ASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 821 ~~i~~VpQdp~lF~-gTIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
++|+||||++.+|. .|+++|+.++.. ..++ +++.+.++..++.++... ...+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADR-----------YPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 89999999999886 799999986521 1222 345666777766554432 23579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||+++|+||||||||++||+.+...+++.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999999876 89999999999999999999987
Q ss_pred CCCchHHH
Q 001980 971 RPDGAYSR 978 (987)
Q Consensus 971 ~~~g~f~~ 978 (987)
++...+.+
T Consensus 231 ~~~~~~~~ 238 (343)
T PRK11153 231 HPKHPLTR 238 (343)
T ss_pred CCCcHHHH
Confidence 65444433
No 170
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-43 Score=396.48 Aligned_cols=219 Identities=33% Similarity=0.552 Sum_probs=193.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|.+ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.+ |++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999953 3589999999999999999999999999999999999999999999999999887653 6889
Q ss_pred EEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||+|++.+|. .|++||+.++.. ..+ ++++.++++..++.++..+.| ..||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999997632 122 346677888888876654443 479999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||+.+...+++.|++..+ ++|+|+|||+++.+.. ||+|+||++|+|++.|+|+++.+++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998764 7899999999998755 89999999999999999999998877
Q ss_pred chHHH
Q 001980 974 GAYSR 978 (987)
Q Consensus 974 g~f~~ 978 (987)
..|..
T Consensus 230 ~~~~a 234 (351)
T PRK11432 230 SRFMA 234 (351)
T ss_pred chHHH
Confidence 65543
No 171
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-44 Score=358.41 Aligned_cols=218 Identities=31% Similarity=0.475 Sum_probs=179.8
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC-HHHHhc
Q 001980 99 NIEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ-LRWLRD 176 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~~ 176 (987)
.++++|+++.|+... ..++++||||+|.+||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999998532 124899999999999999999999999999999999999999999999998776543 335677
Q ss_pred ceEEEcCCCC--Cchh-cHHHHHhcCCCC----CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 177 QIGLVNQEPA--LFAT-TILENILYGKPE----ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 177 ~i~~v~Q~~~--l~~~-tv~eni~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
.|-+|+|||. |-+- ||++-|.-+... ...+++.++++.+++.+ ....+++.+|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~----------~~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPP----------SFLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCH----------HHHhcCchhcChhHHHHHHH
Confidence 8999999995 3333 787776543221 12233344443333321 34556677999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||||..+|++||||||||+||+..+..|++.+.++++ +-|.|+||||+..+.+ ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999999998865 6799999999999988 899999999999999999998776
No 172
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-43 Score=396.34 Aligned_cols=219 Identities=32% Similarity=0.520 Sum_probs=193.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|++ +.++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+++.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999942 23599999999999999999999999999999999999999999999999999887764 4789
Q ss_pred EEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||||++.+|. .|+++||.++.. ..+ ++++.++++..++.++..+.| .+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 699999987643 122 245678888888887766555 479999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+. .||+|++|++|++++.|+|+++++++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999998754 789999999999775 589999999999999999999998876
Q ss_pred chHH
Q 001980 974 GAYS 977 (987)
Q Consensus 974 g~f~ 977 (987)
..|.
T Consensus 228 ~~~~ 231 (356)
T PRK11650 228 STFV 231 (356)
T ss_pred cHHH
Confidence 6554
No 173
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-44 Score=361.34 Aligned_cols=197 Identities=38% Similarity=0.572 Sum_probs=176.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.+++++|+.+|.+ ..||+|+||+|++||.|+|+||||||||||++++.|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4899999999964 4699999999999999999999999999999999999999999999999988543 4679
Q ss_pred EEEcccccccc-ccHHHHhccCCCCC------CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKEGA------TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~~~------sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||+|++.||. -||++|+.++.... ..+...+.++.+|+.+|-+..| ..||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 99999999998 69999999875431 2346788999999999988777 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeC--CEE
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQD--GRI 959 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~-~~D~Iivl~~--G~i 959 (987)
||+.+|+||+||||.+|||+.|...+|+-+.+.. .++||++|||+++... -+|||+||.+ |+|
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999999998875 3689999999998754 5799999999 555
No 174
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-43 Score=391.28 Aligned_cols=222 Identities=27% Similarity=0.460 Sum_probs=188.2
Q ss_pred ccEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC------
Q 001980 98 GNIEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL------ 169 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~------ 169 (987)
..|+++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999997421 23599999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccC
Q 001980 170 ----------QLRWLRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS-TQVGE 234 (987)
Q Consensus 170 ----------~~~~~~~~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~ 234 (987)
....++++|+||+|+| ++|+.|++|||.++... .+.++..+ . ..+.++.+ |+. ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcC
Confidence 3456788999999998 78889999999987421 22222211 1 12344554 664 46788
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccc-cCCEEEEEeCC
Q 001980 235 RGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIR-NVDTVAVIQQG 312 (987)
Q Consensus 235 ~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G 312 (987)
.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999998874 5899999999999875 59999999999
Q ss_pred EEEEecChHHHHHh
Q 001980 313 QVVETGTHEELIAK 326 (987)
Q Consensus 313 ~i~~~g~~~~l~~~ 326 (987)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998654
No 175
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.3e-43 Score=396.56 Aligned_cols=218 Identities=33% Similarity=0.520 Sum_probs=191.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 3589999999999999999999999999999999999999999999999999887764 6789
Q ss_pred EEEcccccccc-ccHHHHhccCCCC--CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKEG--AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~~--~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||||++.+|. .|++||+.++... .+ ++.+.++++..++.++..+. ..+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~-----------~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY-----------PGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCC-----------hhhCCHHHHHHHHHHH
Confidence 99999999996 6999999876321 12 34566777777776655443 3579999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++++++.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998754 7899999999998754 89999999999999999999998877
Q ss_pred chHH
Q 001980 974 GAYS 977 (987)
Q Consensus 974 g~f~ 977 (987)
..|.
T Consensus 228 ~~~~ 231 (353)
T TIGR03265 228 TPFV 231 (353)
T ss_pred CHHH
Confidence 6653
No 176
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=381.73 Aligned_cols=225 Identities=32% Similarity=0.509 Sum_probs=192.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999963 3599999999999999999999999999999999999997 48999999999863 345
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCCC---C----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEG---A----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~---~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||++.+|..|++|||.++... . .++.+.++++.+++.+.+ ++.+++. ..+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNTN----ALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhCC----cccCCHHHH
Confidence 6788999999999999999999999865311 1 134566777777765433 2344554 457999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|++|||||||++||+.+...+++.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999855 899999999999999999999
Q ss_pred hcCCCchHHH
Q 001980 969 VSRPDGAYSR 978 (987)
Q Consensus 969 l~~~~g~f~~ 978 (987)
.+++.-.|.+
T Consensus 237 ~~~~~~~~~~ 246 (254)
T PRK14273 237 FFNPKNTKTE 246 (254)
T ss_pred HhCCCChHHH
Confidence 8765555543
No 177
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-43 Score=377.37 Aligned_cols=217 Identities=33% Similarity=0.533 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~ 176 (987)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999973 358999999999999999999999999999999999999999999999999877654 46778
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
.|+|++|++.+|+. |++||+.++.. ....++..+. +.+.++.+ |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-----VLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 89999999999886 99999987632 1122222111 12233433 55555567778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999998753 7999999999998865 899999999999999999887643
No 178
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-43 Score=387.00 Aligned_cols=218 Identities=33% Similarity=0.530 Sum_probs=185.7
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC--HHHHh
Q 001980 745 IELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN--LKSLR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--l~~lR 820 (987)
|+++||+++|++.. ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996421 136999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cccEEEcccc--ccccccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 821 LKIGLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 821 ~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
++++||||+| .+|+.|+++||.++.. ..+++ .+.++++.+++.. .+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHHH
Confidence 9999999998 5789999999986521 23333 3566677776640 0112233457999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|||+|||+++.+. .||||++|++|++++.|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 789999999999885 58999999999999999999987
Q ss_pred cC
Q 001980 970 SR 971 (987)
Q Consensus 970 ~~ 971 (987)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 53
No 179
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.1e-43 Score=378.60 Aligned_cols=223 Identities=36% Similarity=0.578 Sum_probs=190.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-----CceEEECCccCCCC--CHH
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-----AGKVMIDGKDIRRL--NLK 817 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~i--~l~ 817 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 35899999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhcccEEEccccccccccHHHHhccCCC--C-CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 818 SLRLKIGLVQQEPALFAASIFDNIAYGKE--G-AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~-~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
.+|++++|+||++.+|..|+++|+.++.. . .+ ++++.++++..++.+++.. -+ .....+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~----~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD---RL----HDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---Hh----hCCcccCCHHHHH
Confidence 77899999999999999999999976421 1 11 2456777888887644321 12 2334579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999998865 8999999999999999999998
Q ss_pred cCCCchHH
Q 001980 970 SRPDGAYS 977 (987)
Q Consensus 970 ~~~~g~f~ 977 (987)
..+...+.
T Consensus 232 ~~~~~~~~ 239 (247)
T TIGR00972 232 TNPKEKRT 239 (247)
T ss_pred hCCCChHH
Confidence 76544443
No 180
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-43 Score=380.09 Aligned_cols=225 Identities=33% Similarity=0.558 Sum_probs=192.5
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--C
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--L 814 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i 814 (987)
.+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 457999999999963 359999999999999999999999999999999999986 579999999999863 4
Q ss_pred CHHHHhcccEEEccccccccccHHHHhccCCC---CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 815 NLKSLRLKIGLVQQEPALFAASIFDNIAYGKE---GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 815 ~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~---~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
+...+|++++|+||++.+|..|+++|+.++.. ..+ +++++++++.+++.+.+.. ...+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHH
Confidence 56678999999999999999999999986532 122 2456777888877543322 233445679999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~ 966 (987)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999998865 8999999999999999999
Q ss_pred HHhcCCCchH
Q 001980 967 ELVSRPDGAY 976 (987)
Q Consensus 967 eLl~~~~g~f 976 (987)
++...+...|
T Consensus 241 ~~~~~~~~~~ 250 (260)
T PRK10744 241 TIFTKPAKKQ 250 (260)
T ss_pred HHHhCCCcHH
Confidence 9987644433
No 181
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.3e-43 Score=374.62 Aligned_cols=219 Identities=51% Similarity=0.837 Sum_probs=194.1
Q ss_pred CCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh
Q 001980 96 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 96 ~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~ 175 (987)
..+.++++|++++|++....++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34569999999999753234589999999999999999999999999999999999999999999999988777777777
Q ss_pred cceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 176 DQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
++++|++|++.+|+.|++||+.++.......++.+......+.+.++.+|.|+++.+.+.+.+||||||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 88999999999999999999998754333444444444556678888898899998999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEE
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQV 314 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i 314 (987)
+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988767899999999999988999999999874
No 182
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-43 Score=380.79 Aligned_cols=221 Identities=33% Similarity=0.567 Sum_probs=190.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~l 816 (987)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4999999999953 359999999999999999999999999999999999975 589999999999875 345
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||++.+|..|+++|+.++.. . ..++++.++++.+++.+.+.. .......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 678899999999999999999999986421 1 123456777888877654432 12344567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|||++||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767899999999999855 899999999999999999999
Q ss_pred hcCCCc
Q 001980 969 VSRPDG 974 (987)
Q Consensus 969 l~~~~g 974 (987)
.+.+..
T Consensus 236 ~~~~~~ 241 (253)
T PRK14242 236 FTRPRE 241 (253)
T ss_pred HcCCCc
Confidence 876443
No 183
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2e-43 Score=393.73 Aligned_cols=207 Identities=36% Similarity=0.574 Sum_probs=183.4
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH----hcccEEEcccccccc-
Q 001980 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL----RLKIGLVQQEPALFA- 834 (987)
Q Consensus 760 ~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l----R~~i~~VpQdp~lF~- 834 (987)
.++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|+|||.|+..++...+ |++++||||++.+|.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 358999999999999999999999999999999999999999999999999999998887 789999999999997
Q ss_pred ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 001980 835 ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD 908 (987)
Q Consensus 835 gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLD 908 (987)
.|+++|+.++.. ..+ .+.+.++++.+++.++..+.| .+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 599999986532 112 345677888888876655443 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001980 909 EATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977 (987)
Q Consensus 909 EaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti-~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~ 977 (987)
||||+||+.+.+.+++.+.+.. .++|+|+|||+++.+ ..||+|++|++|++++.|+|+++++++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999999874 379999999999986 45899999999999999999999987655554
No 184
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-43 Score=382.56 Aligned_cols=213 Identities=33% Similarity=0.588 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 3599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcccc--ccccccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 824 GLVQQEP--ALFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 824 ~~VpQdp--~lF~gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
+|+||+| .+|..|+++|+.++.. ..+ ++++.++++.+++.++..+.| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6788999999986522 122 245677888888876655444 36999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHh
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
|||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999999875 4799999999999985 58999999999999999987653
No 185
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-43 Score=394.70 Aligned_cols=217 Identities=27% Similarity=0.430 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ +..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...++. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999942 23589999999999999999999999999999999999999999999999999887664 3689
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+||+|++.+|+. ||+|||.|+... ....+..+ .+.+.++.+ |++......+.+|||||||||+|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE-----RVAEAARIL--ELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999965 999999987431 11111111 112233333 55555667778999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++.++
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999998753 8999999999998765 899999999999999999998764
No 186
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-43 Score=374.87 Aligned_cols=213 Identities=36% Similarity=0.544 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999963 359999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EEcccccccc-ccHHHHhccCCCC--C----C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGKEG--A----T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~~~--~----s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
|+||+|.+|. .|+++|+.++... . . ++++.++++..++.++... ...+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR-----------YPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 9999999885 6999999865321 1 1 2345566677766544332 23579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999998755 89999999999999999999986
Q ss_pred CCC
Q 001980 971 RPD 973 (987)
Q Consensus 971 ~~~ 973 (987)
.+.
T Consensus 227 ~~~ 229 (239)
T cd03296 227 HPA 229 (239)
T ss_pred CCC
Confidence 543
No 187
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3e-43 Score=376.46 Aligned_cols=213 Identities=31% Similarity=0.556 Sum_probs=182.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH-hccc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l-R~~i 823 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999963 359999999999999999999999999999999999999999999999999988876654 6789
Q ss_pred EEEccccccccc-cHHHHhccCCCCC------------C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKEGA------------T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~~~------------s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
+|+||++.+|.+ |+++|+.++.... . .+.+.++++..++ +.........|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL-----------ADLADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc-----------cchhhCChhhCCH
Confidence 999999999986 9999997653211 0 1123344444443 3333344567999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt 964 (987)
|||||++|||||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999999999875 68899999999999866 89999999999999999
Q ss_pred hhHHhcC
Q 001980 965 HSELVSR 971 (987)
Q Consensus 965 ~~eLl~~ 971 (987)
+++++.+
T Consensus 227 ~~~~~~~ 233 (236)
T cd03219 227 PDEVRNN 233 (236)
T ss_pred HHHhccC
Confidence 9998764
No 188
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-43 Score=384.63 Aligned_cols=216 Identities=29% Similarity=0.541 Sum_probs=184.9
Q ss_pred EEEEeEEEECCCCCC--ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC----CCHHH
Q 001980 745 IELRHVDFAYPSRPD--VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR----LNLKS 818 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~--~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~l~~ 818 (987)
|+++||+|+|+.... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999963311 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcccEEEcccc--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 819 LRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 819 lR~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd----~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
+|++++||+|+| .+|..|+.+|+.++.. ..+. +++.++++.+++. ++.. ....+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-----------KSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-----------CCcccCCHHHH
Confidence 899999999998 7899999999987532 1222 2355666666663 2322 33457999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~e 967 (987)
||++|||||+.+|+||||||||++||+.+...+.+.|+++. +++|||+|||+++.+. .||+|++|++|++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998865 4789999999999885 599999999999999999999
Q ss_pred HhcC
Q 001980 968 LVSR 971 (987)
Q Consensus 968 Ll~~ 971 (987)
+..+
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8754
No 189
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-43 Score=382.84 Aligned_cols=216 Identities=32% Similarity=0.555 Sum_probs=191.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999642 23599999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEcccc--ccccccHHHHhccCCCC--CCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 824 GLVQQEP--ALFAASIFDNIAYGKEG--ATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 824 ~~VpQdp--~lF~gTIreNL~~~~~~--~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
+|+||+| .+++.|++|||.++... .+. +++.++++..++.+++...| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 46778999999865221 222 34677788888877666544 37999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|||+.+|+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++++.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998763 7899999999999988999999999999999999998764
No 190
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-43 Score=379.60 Aligned_cols=225 Identities=31% Similarity=0.478 Sum_probs=190.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCC--CCCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIR--RLNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~--~i~l 816 (987)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999987 4999999999997 4566
Q ss_pred HHHhcccEEEccccccccc-cHHHHhccCCC--C--CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 817 KSLRLKIGLVQQEPALFAA-SIFDNIAYGKE--G--AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~g-TIreNL~~~~~--~--~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
..+|++++|+||++.+|.+ |+++|+.++.. . .. ++++.++++..++.+.+.. .+ .....+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~----~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD---RL----NDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh---hh----ccChhhCCHH
Confidence 6788999999999999975 99999976421 1 01 2345677777776544321 12 3345679999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~ 966 (987)
||||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777999999999999865 8999999999999999999
Q ss_pred HHhcCCCchHHH
Q 001980 967 ELVSRPDGAYSR 978 (987)
Q Consensus 967 eLl~~~~g~f~~ 978 (987)
++++.+...|.+
T Consensus 234 ~~~~~~~~~~~~ 245 (253)
T PRK14267 234 KVFENPEHELTE 245 (253)
T ss_pred HHHhCCCcHHHH
Confidence 998664434444
No 191
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.5e-43 Score=372.88 Aligned_cols=211 Identities=27% Similarity=0.476 Sum_probs=182.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++||+++|++. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5789999999642 146999999999999999999999999999999999999999999999999987643 66788999
Q ss_pred EEccccccc-cccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALF-AASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF-~gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+| ..|+++|+.++.. ..+ ++++.++++..++.+.. ++.+ .+||+|||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NKRA----RTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hChh----hhCCHHHHHHHHHHHH
Confidence 999999998 5799999975421 112 23456667776665443 3333 4699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999998777999999999999865 899999999999999999875
No 192
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-43 Score=381.43 Aligned_cols=217 Identities=33% Similarity=0.522 Sum_probs=190.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
-|+++||+++|++....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743234599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcccc--ccccccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 824 GLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 824 ~~VpQdp--~lF~gTIreNL~~~~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
+|+||+| .++..|+.+||.++.. ..+++ .+.++++.+++.++.... ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4678899999986422 23333 345677777776654432 347999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|||+++|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998754 7899999999999988999999999999999999998865
No 193
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=5e-43 Score=391.83 Aligned_cols=218 Identities=35% Similarity=0.542 Sum_probs=190.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+. .|+++
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3889999999963 359999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEEcccccccc-ccHHHHhccCCC------CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE------GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~------~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+||||++.+|. .|++||+.++.. ..+ ++++.++++..++.++..+.| ..||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHH
Confidence 99999999997 599999987632 112 245667778887766554433 47999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+|||||+++|++||||||||+||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+|++++
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998764 7899999999998765 8999999999999999999999
Q ss_pred cCCCchHH
Q 001980 970 SRPDGAYS 977 (987)
Q Consensus 970 ~~~~g~f~ 977 (987)
+++...|.
T Consensus 226 ~~p~~~~~ 233 (353)
T PRK10851 226 REPATRFV 233 (353)
T ss_pred hCccchHH
Confidence 88765553
No 194
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-43 Score=384.73 Aligned_cols=217 Identities=30% Similarity=0.494 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC----CHH
Q 001980 744 EIELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL----NLK 817 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~l~ 817 (987)
.|+++||+++|++.+ ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 13699999999999999999999999999999999999999999999999999753 346
Q ss_pred HHhcccEEEcccc--ccccccHHHHhccCCC--CCCHHH----HHHHHHHcCchhhHhhCCCcCCCc-cCCCCCCCChhH
Q 001980 818 SLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAE----VVEAARAANVHGFVSALPNAYKTP-VGERGVQLSGGQ 888 (987)
Q Consensus 818 ~lR~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd~e----i~~al~~a~l~~~i~~lp~gldt~-vge~G~~LSgGQ 888 (987)
.+|++|+||||+| .+|..|+++||.++.. ..+.++ +.++++.++ +++. ....+.+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~~LSgGq 150 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLG-----------FSRDVMSQSPFQMSGGQ 150 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcC-----------CChhhhhCCcccCCHHH
Confidence 7899999999998 5888999999987532 223333 333444444 3322 234567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecCh
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~ 965 (987)
|||++|||||+.+|+||||||||++||+.+...+++.|+++. .++|||+|||+++.+. .||||++|++|++++.|++
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999874 4799999999999885 5899999999999999999
Q ss_pred hHHhcC
Q 001980 966 SELVSR 971 (987)
Q Consensus 966 ~eLl~~ 971 (987)
++++++
T Consensus 231 ~~~~~~ 236 (286)
T PRK13646 231 KELFKD 236 (286)
T ss_pred HHHHhC
Confidence 998765
No 195
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-43 Score=374.32 Aligned_cols=216 Identities=37% Similarity=0.586 Sum_probs=185.8
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH---HHh
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~---~lR 820 (987)
|+++|++++|+++. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 12699999999999999999999999999999999999999999999999999877654 357
Q ss_pred cccEEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 821 LKIGLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 821 ~~i~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
++++|+||++.+|. .|++||+.++.. ..+ ++++.++++..++.+..... ..+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAY-----------PAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 89999999999997 699999975421 112 34566777777776554432 3579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||+++|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999875 37899999999999865 89999999999999999999875
Q ss_pred C
Q 001980 971 R 971 (987)
Q Consensus 971 ~ 971 (987)
.
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 4
No 196
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=5.8e-43 Score=394.75 Aligned_cols=221 Identities=28% Similarity=0.494 Sum_probs=195.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccc-ccccHHHHhccCCCC----------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 824 GLVQQEPAL-FAASIFDNIAYGKEG----------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 824 ~~VpQdp~l-F~gTIreNL~~~~~~----------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+||||++.+ |+.|++||+.++... ..++.+.++++.+++.++..+ + ...||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-------~----~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-------P----VTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-------C----hhhCCHHHHHHH
Confidence 999999987 688999999875421 123467888999998776543 2 346999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
+|||||+++|+||||||||++||+.+...+++.|+++. +++|||+++|+++.+. .||||++|++|++++.|+|++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 5789999999999995 589999999999999999999986
Q ss_pred CCCchHHHHH
Q 001980 971 RPDGAYSRLL 980 (987)
Q Consensus 971 ~~~g~f~~l~ 980 (987)
. ....+++
T Consensus 229 ~--~~l~~~~ 236 (402)
T PRK09536 229 A--DTLRAAF 236 (402)
T ss_pred c--HHHHHHh
Confidence 4 3455554
No 197
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=4.6e-43 Score=392.46 Aligned_cols=219 Identities=33% Similarity=0.543 Sum_probs=192.3
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC--ceEEECCccCCCCCHHHHh
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA--GKVMIDGKDIRRLNLKSLR 820 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~--G~I~idG~di~~i~l~~lR 820 (987)
|.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++...+. .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 67999999999963 359999999999999999999999999999999999999999 999999999987665 36
Q ss_pred cccEEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 821 LKIGLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 821 ~~i~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
++|+||+|++.+|.. |+++||.++.. ..+ ++.+.++++..++.++..+.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999965 99999987532 122 234667788888877665554 479999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC---CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR---GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~---~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
|||||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+.. ||+|+||++|++++.|+|+++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998754 6899999999998755 8999999999999999999999
Q ss_pred cCCCchHH
Q 001980 970 SRPDGAYS 977 (987)
Q Consensus 970 ~~~~g~f~ 977 (987)
+++...|.
T Consensus 228 ~~p~~~~~ 235 (362)
T TIGR03258 228 DAPADGFA 235 (362)
T ss_pred hCcCcHHH
Confidence 88765553
No 198
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.3e-43 Score=371.89 Aligned_cols=203 Identities=34% Similarity=0.568 Sum_probs=176.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH---HHhc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLRL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~---~lR~ 821 (987)
|+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999642 23599999999999999999999999999999999999999999999999999876543 4788
Q ss_pred ccEEEcccccccc-ccHHHHhccCCC------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 822 KIGLVQQEPALFA-ASIFDNIAYGKE------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 822 ~i~~VpQdp~lF~-gTIreNL~~~~~------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
+++|+||++.+|. .|++||+.++.. ...++++.++++..++.++....| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999886 599999986421 112456778888888876654433 3699999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEE
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRI 959 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~i 959 (987)
||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 47899999999999875 799999999985
No 199
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-43 Score=392.10 Aligned_cols=216 Identities=30% Similarity=0.473 Sum_probs=184.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999974 3489999999999999999999999999999999999999999999999999876653 4689
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+||+|++.+|+. ||+|||.|+... ....+..+ .+.+.++.+ |+.......+.+|||||||||+|||||+.
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~~--gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQ-----RVKEALELV--DLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999976 999999997431 11222111 112223333 55555567778999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|++++.|+++++..+
T Consensus 154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998853 8999999999998755 899999999999999999998764
No 200
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-43 Score=376.08 Aligned_cols=212 Identities=36% Similarity=0.591 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC---HHHHhc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSLRL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---l~~lR~ 821 (987)
|+++||+++|++ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999964 136999999999999999999999999999999999999999999999999998876 566889
Q ss_pred ccEEEcccccccc-ccHHHHhccCCCC--------------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 822 KIGLVQQEPALFA-ASIFDNIAYGKEG--------------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 822 ~i~~VpQdp~lF~-gTIreNL~~~~~~--------------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
+++|+||++.+|. .|+++|+.++... ..++++.++++..++.+.. ...+..|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----------YQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----------CCCcccCCH
Confidence 9999999998886 6999999764211 1123455666666654432 234467999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEec
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~G 963 (987)
|||||++|||||+++|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 3799999999999998 58999999999999999
Q ss_pred ChhHHh
Q 001980 964 SHSELV 969 (987)
Q Consensus 964 t~~eLl 969 (987)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 999874
No 201
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-43 Score=375.95 Aligned_cols=227 Identities=33% Similarity=0.503 Sum_probs=194.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCCCCHHH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRLNLKS 818 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i~l~~ 818 (987)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999963 3599999999999999999999999999999999999974 6999999999999888888
Q ss_pred HhcccEEEccccccc-cccHHHHhccCCC--C------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 819 LRLKIGLVQQEPALF-AASIFDNIAYGKE--G------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 819 lR~~i~~VpQdp~lF-~gTIreNL~~~~~--~------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
+|++++|+||+|.+| ..|++||+.++.. . ..++++.++++..++.+.+. +.+++.+ .+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~~----~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLDAPA----GKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhcCCc----ccCCHHHH
Confidence 999999999999755 6799999976421 1 11345677888888765432 2234444 46999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999885 5899999999999999999999
Q ss_pred hcCCCchHHHHH
Q 001980 969 VSRPDGAYSRLL 980 (987)
Q Consensus 969 l~~~~g~f~~l~ 980 (987)
.+.+...+.+.+
T Consensus 233 ~~~~~~~~~~~~ 244 (250)
T PRK14247 233 FTNPRHELTEKY 244 (250)
T ss_pred HcCCccHHHHHH
Confidence 876554454433
No 202
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-43 Score=382.08 Aligned_cols=219 Identities=37% Similarity=0.595 Sum_probs=187.2
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH----hc
Q 001980 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL----RL 821 (987)
Q Consensus 746 ~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l----R~ 821 (987)
.++|++++|.+ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777742 358999999999999999999999999999999999999999999999999988765543 46
Q ss_pred ccEEEcccccccc-ccHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 822 KIGLVQQEPALFA-ASIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 822 ~i~~VpQdp~lF~-gTIreNL~~~~~--~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
+++|+||++.+|. .|+++|+.++.. .. .++++.++++..++.+++...| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 8999999999884 699999976421 11 1345677888888876665544 3699999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||||+++|+||||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999875 37999999999998755 899999999999999999999876
Q ss_pred CCchHHH
Q 001980 972 PDGAYSR 978 (987)
Q Consensus 972 ~~g~f~~ 978 (987)
+...|.+
T Consensus 252 ~~~~~~~ 258 (269)
T cd03294 252 PANDYVR 258 (269)
T ss_pred cCcHHHH
Confidence 6555544
No 203
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=378.00 Aligned_cols=224 Identities=33% Similarity=0.549 Sum_probs=191.7
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCC--C
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--L 814 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i 814 (987)
.+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 3599999999999999999999999999999999999975 89999999999875 3
Q ss_pred CHHHHhcccEEEccccccccccHHHHhccCCC--C-----C-CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 815 NLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----A-TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 815 ~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~-----~-sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
+...+|++++|+||+|.+|..|+++|+.++.. . . .++++.++++.+++.+++.. .....+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCH
Confidence 55678899999999999999999999986421 1 1 13446777888887654421 12334567999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecCh
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~ 965 (987)
|||||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988777899999999999855 799999999999999999
Q ss_pred hHHhcCCCch
Q 001980 966 SELVSRPDGA 975 (987)
Q Consensus 966 ~eLl~~~~g~ 975 (987)
++++.++...
T Consensus 247 ~~~~~~~~~~ 256 (267)
T PRK14235 247 EKMFTNPDDP 256 (267)
T ss_pred HHHHhCCCCH
Confidence 9998654443
No 204
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=8.3e-43 Score=387.11 Aligned_cols=225 Identities=27% Similarity=0.390 Sum_probs=189.7
Q ss_pred cEEEEeEEEECCCCC----------CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC
Q 001980 744 EIELRHVDFAYPSRP----------DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR 813 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~----------~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 813 (987)
-|+++|++++|+.+. ..++++||||+|++||.+||+|+||||||||+++|+|+++|++|+|++||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999998
Q ss_pred CCHHH---HhcccEEEcccc--ccc-cccHHHHhccCC----CCCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCC
Q 001980 814 LNLKS---LRLKIGLVQQEP--ALF-AASIFDNIAYGK----EGATEA----EVVEAARAANVHGFVSALPNAYKTPVGE 879 (987)
Q Consensus 814 i~l~~---lR~~i~~VpQdp--~lF-~gTIreNL~~~~----~~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge 879 (987)
++.+. +|++|+||+|+| .+| ..||.+||.++. +..+.+ .+.++++.+++.+. -+ ..
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~------~~----~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN------LI----NR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH------Hh----cC
Confidence 87543 678999999999 466 579999986431 123433 34456666666321 11 22
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeC
Q 001980 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQD 956 (987)
Q Consensus 880 ~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~ 956 (987)
....||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 3457999999999999999999999999999999999999999999998753 7899999999999976 899999999
Q ss_pred CEEEEecChhHHhcCCCchHHH
Q 001980 957 GRIVEQGSHSELVSRPDGAYSR 978 (987)
Q Consensus 957 G~ive~Gt~~eLl~~~~g~f~~ 978 (987)
|+|+|.|+++++++++...|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999876666765
No 205
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=8.7e-43 Score=391.49 Aligned_cols=218 Identities=38% Similarity=0.602 Sum_probs=193.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|.+ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++..++.+ ++++
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999963 3589999999999999999999999999999999999999999999999999887764 5789
Q ss_pred EEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||+|++.+|.. ||+|||.++.. ..+ ++++.++++..++.++..+.| ..||||||||+||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 99999987642 122 235677888888887776655 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||..+...+.+.|++..+ +.|+|+|||+++.+. -+|+|++|++|+|++.|+|+++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998764 789999999999875 489999999999999999999998876
Q ss_pred chHH
Q 001980 974 GAYS 977 (987)
Q Consensus 974 g~f~ 977 (987)
..|.
T Consensus 238 ~~~~ 241 (375)
T PRK09452 238 NLFV 241 (375)
T ss_pred cHHH
Confidence 6553
No 206
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=5.3e-43 Score=371.08 Aligned_cols=213 Identities=28% Similarity=0.448 Sum_probs=179.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH-hccc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l-R~~i 823 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 359999999999999999999999999999999999999999999999999988877654 6789
Q ss_pred EEEccccccccc-cHHHHhccCCCCCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHH
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKEGATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAl 898 (987)
+|+||++.+|.+ |+++|+.++....... ++.++++.. ..+++.++ .....||||||||++|||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l~~~~~----~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRLKERRK----QLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhhhhhhh----CchhhCCHHHHHHHHHHHHH
Confidence 999999999986 9999998754322111 222222222 11222333 34457999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 899 LKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 899 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
+++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999999999999875 57899999999998765 89999999999999999988754
No 207
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.6e-43 Score=392.14 Aligned_cols=217 Identities=31% Similarity=0.493 Sum_probs=187.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...++. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 3489999999999999999999999999999999999999999999999999877654 5689
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+||+|++.+|+. ||+||+.|+.... +..+.. ..+.+.++.+ |++....+.+.+||||||||++|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 9999999874321 111111 1223445555 67667778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+|+++|||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++.++.
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999998753 8999999999998755 8999999999999999999998653
No 208
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-42 Score=376.63 Aligned_cols=224 Identities=34% Similarity=0.569 Sum_probs=190.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCCC--CH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRL--NL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 3599999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
..+|+.++|+||++.+|..|+++|+.++.. ..+. +++.++++.+++.+.+. +.++++ ...|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~----~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKSP----ALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcCC----hhhCCHHHHH
Confidence 567889999999999999999999986421 1222 34566777777654321 223433 4579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
|++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999865 8999999999999999999998
Q ss_pred cCCCchHH
Q 001980 970 SRPDGAYS 977 (987)
Q Consensus 970 ~~~~g~f~ 977 (987)
+++...|.
T Consensus 242 ~~~~~~~~ 249 (258)
T PRK14268 242 HNPREKST 249 (258)
T ss_pred cCCCCHHH
Confidence 76555443
No 209
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-43 Score=380.16 Aligned_cols=221 Identities=31% Similarity=0.500 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224589999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 GLVNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~~v~Q~~~--l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|++|+|. ++..||+|||.++... .+.++..+. +.+.++.+ |+.........+||||||||++|||||+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LSgGq~qrv~lAral~ 156 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER-----VNEALELV--GMQDFKEREPARLSGGQKQRVAIAGAVA 156 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 4566999999987431 122221111 11223333 5555556667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|++|||||||++||+.+++.+.+.|.++.+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999998853 8999999999999877999999999999999999887654
No 210
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-43 Score=373.88 Aligned_cols=221 Identities=34% Similarity=0.543 Sum_probs=187.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
++++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999641 35999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||+|.+|. .|++||+.++.. ..+ ++++.++++..++.+- ......+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999985 699999976421 111 2345566666665420 01223446799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCc
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDG 974 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g 974 (987)
|+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+++..
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 229 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPAN 229 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCCC
Confidence 9999999999999999999999999999998753 7999999999998754 899999999999999999999765433
Q ss_pred hH
Q 001980 975 AY 976 (987)
Q Consensus 975 ~f 976 (987)
.|
T Consensus 230 ~~ 231 (242)
T cd03295 230 DF 231 (242)
T ss_pred hH
Confidence 33
No 211
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.4e-43 Score=391.92 Aligned_cols=205 Identities=33% Similarity=0.506 Sum_probs=177.2
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH----hcceEEEcCCCCCchh
Q 001980 115 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL----RDQIGLVNQEPALFAT 190 (987)
Q Consensus 115 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~v~Q~~~l~~~ 190 (987)
..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++ +++|+||+|++++|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 348999999999999999999999999999999999999999999999999999888776 7789999999999975
Q ss_pred -cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 001980 191 -TILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267 (987)
Q Consensus 191 -tv~eni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts 267 (987)
||+|||.++.+.. ..++..+ .+.+.++.+ |++...++.+.+|||||||||+|||||+.+|+|+|||||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~v--gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE-----KALELLKLV--GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999864321 1111111 112233333 66666778888999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 268 ALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 268 ~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+||+.+++.+++.+.++. .++|+|+|||+++++.. ||+|++|++|++++.|++++++++
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999999875 38999999999998755 899999999999999999998765
No 212
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=8.2e-43 Score=374.85 Aligned_cols=212 Identities=32% Similarity=0.559 Sum_probs=182.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH---HHHhc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL---KSLRL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l---~~lR~ 821 (987)
|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2359999999999999999999999999999999999999999999999999987654 44788
Q ss_pred ccEEEcccccccc-ccHHHHhccCCCC--------------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 822 KIGLVQQEPALFA-ASIFDNIAYGKEG--------------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 822 ~i~~VpQdp~lF~-gTIreNL~~~~~~--------------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
+++|+||++.+|. .|+++|+.++... ..++++.++++..++.++.. ....+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCH
Confidence 9999999998886 6999999764311 11234566666666654432 33457999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
|||||++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999875 37899999999999854 8999999999999999
Q ss_pred ChhHHh
Q 001980 964 SHSELV 969 (987)
Q Consensus 964 t~~eLl 969 (987)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999873
No 213
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.3e-42 Score=372.72 Aligned_cols=220 Identities=30% Similarity=0.457 Sum_probs=195.9
Q ss_pred ccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHh
Q 001980 741 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 820 (987)
Q Consensus 741 ~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR 820 (987)
..+.|+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||
T Consensus 36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------ 98 (282)
T cd03291 36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------ 98 (282)
T ss_pred CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence 34579999999952 2599999999999999999999999999999999999999999999998
Q ss_pred cccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 821 LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 821 ~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
+++|+||++.+|.+|+++|+.++.. ..+.++.++++.+++.+.+..+|.++++.+++.+..||||||||++|||||++
T Consensus 99 -~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 99 -RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred -EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 3999999999999999999986532 34456677788889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHH
Q 001980 901 NPAILLLDEATSALDAESECVLQEAL-ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l-~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l 979 (987)
+|++|||||||++||+++...+.+.+ ++..+++|||+|||+++.+..||+|++|++|++++.|+++++.+. ...|.+.
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 255 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSSK 255 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHHH
Confidence 99999999999999999999888754 555568999999999999988999999999999999999999865 3456544
Q ss_pred H
Q 001980 980 L 980 (987)
Q Consensus 980 ~ 980 (987)
+
T Consensus 256 ~ 256 (282)
T cd03291 256 L 256 (282)
T ss_pred H
Confidence 4
No 214
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.2e-42 Score=375.25 Aligned_cols=218 Identities=32% Similarity=0.522 Sum_probs=186.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC---------
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN--------- 815 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--------- 815 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999963 35999999999999999999999999999999999999999999999999987653
Q ss_pred ----HHHHhcccEEEcccccccc-ccHHHHhccCCC---CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 001980 816 ----LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE---GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883 (987)
Q Consensus 816 ----l~~lR~~i~~VpQdp~lF~-gTIreNL~~~~~---~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 883 (987)
...+|++++|+||++.+|. .|+++|+.++.. .. .++++.++++..++.++... ....
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADH-----------MPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhc-----------Chhh
Confidence 2467899999999999885 799999986411 11 23445667777776655443 3357
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEE
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIV 960 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv 960 (987)
||||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 7899999999999854 8999999999999
Q ss_pred EecChhHHhcCCCchH
Q 001980 961 EQGSHSELVSRPDGAY 976 (987)
Q Consensus 961 e~Gt~~eLl~~~~g~f 976 (987)
+.|+++++.+.+.-.|
T Consensus 227 ~~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 227 EQGKPDEIFRQPKEER 242 (252)
T ss_pred EeCCHHHHhcCCCcHH
Confidence 9999999987654334
No 215
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-43 Score=369.19 Aligned_cols=203 Identities=38% Similarity=0.611 Sum_probs=175.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999963 359999999999999999999999999999999999999999999999999986543 577899
Q ss_pred EEcccccccc-ccHHHHhccCCCC--CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGKEG--AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~~~--~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+|. .|+++|+.++... .+ ++++.++++..++.++.... ..+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-----------PHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHHHHH
Confidence 9999998885 6999999764221 11 23456677777776554433 24799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
|+++|++|||||||++||+.+...+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999875 37899999999998765 8999999999998865
No 216
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-43 Score=377.09 Aligned_cols=223 Identities=32% Similarity=0.551 Sum_probs=189.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCCCC--HH
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRRLN--LK 817 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~i~--l~ 817 (987)
-+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999953 369999999999999999999999999999999999986 47999999999987653 34
Q ss_pred HHhcccEEEccccccccccHHHHhccCC--CC------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 818 SLRLKIGLVQQEPALFAASIFDNIAYGK--EG------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~gTIreNL~~~~--~~------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
.+|++++|+||++.+|.+|+++|+.++. .+ ..++++.++++..++.+.+. +.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 6789999999999999999999997641 11 12345667778777755322 123344567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 899999999999999999999
Q ss_pred hcCCCchHH
Q 001980 969 VSRPDGAYS 977 (987)
Q Consensus 969 l~~~~g~f~ 977 (987)
++.+...|.
T Consensus 236 ~~~~~~~~~ 244 (251)
T PRK14244 236 FKNPQSSKT 244 (251)
T ss_pred hcCCCChHH
Confidence 877655553
No 217
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=370.61 Aligned_cols=210 Identities=29% Similarity=0.464 Sum_probs=179.9
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---H
Q 001980 744 EIELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---L 819 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---l 819 (987)
.++++||+++|+++. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||.++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999996432 146999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cccEEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 820 R-LKIGLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 820 R-~~i~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
| +.++|+||++.+|.. |+++|+.++.. ... ++++.++++..++.++.. ....+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN-----------HRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHH
Confidence 3 679999999998875 99999976311 111 234566777776654433 2345799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEEecC
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt 964 (987)
++||||++++|+||||||||++||+.+...+.+.|++.. +++|+|+|||+++.+..+|++++|++|+|++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4799999999999999999999999999998775
No 218
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=392.29 Aligned_cols=218 Identities=34% Similarity=0.545 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999876653 5789
Q ss_pred EEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||||++.+|. .|++||+.++.. ..+ ++++.++++..++.++..+.| ..||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999987532 122 235677778887766544433 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998753 7899999999998765 89999999999999999999988766
Q ss_pred chHH
Q 001980 974 GAYS 977 (987)
Q Consensus 974 g~f~ 977 (987)
..|-
T Consensus 227 ~~~~ 230 (369)
T PRK11000 227 NRFV 230 (369)
T ss_pred cHHH
Confidence 5553
No 219
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-42 Score=379.99 Aligned_cols=215 Identities=28% Similarity=0.550 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC--CCCHHHHhc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSLRL 821 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~l~~lR~ 821 (987)
-|+++||+++|++ +.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999952 235999999999999999999999999999999999999999999999999984 345667899
Q ss_pred ccEEEcccc--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 822 KIGLVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 822 ~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
+++|+||+| .+|+.|+++|+.++.. ..+. +.+.++++..++.++.. ....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHH
Confidence 999999998 5789999999976421 1232 34566677777755432 334579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||+.+|+||||||||++||+.+...+.+.|++..+ ++|||++||+++.+. .||+|++|++|++++.|+++++++
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998764 799999999999986 599999999999999999999876
Q ss_pred C
Q 001980 971 R 971 (987)
Q Consensus 971 ~ 971 (987)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
No 220
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=5e-43 Score=372.36 Aligned_cols=213 Identities=35% Similarity=0.580 Sum_probs=177.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----CCCccEEEECCEeCCCCC--HH
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY-----DPNAGHVLLDNVDIKTLQ--LR 172 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-----~~~~G~i~~~g~~~~~~~--~~ 172 (987)
|+++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+ ..
T Consensus 1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 4789999999743 4899999999999999999999999999999999999 999999999999987766 45
Q ss_pred HHhcceEEEcCCCCCchhcHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHHhCCCCCcccccCC--CCCCChHHHHHH
Q 001980 173 WLRDQIGLVNQEPALFATTILENILYGKPEA---TMAEVEAAASAANAHSFITLLPNGYSTQVGER--GVQLSGGQKQRI 247 (987)
Q Consensus 173 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~--g~~LSgGqkqRi 247 (987)
.++++++|++|++.+|+.|++||+.++.... ..++..+ .+.+.++.+ |+....... +.+||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE-----RVEEALRKA--ALWDEVKDRLHALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHH-----HHHHHHHHc--CCChHHhccCCcccCCHHHHHHH
Confidence 6678899999999988779999998753211 1111111 112223333 444333444 579999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHH
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEE 322 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 322 (987)
+|||||+.+|+++||||||++||+.+++.+.+.|+++.+.+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999999999999988645899999999998765 89999999999999988765
No 221
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.8e-43 Score=373.74 Aligned_cols=221 Identities=31% Similarity=0.506 Sum_probs=185.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcce
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~i 178 (987)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999973 358999999999999999999999999999999999999999999999999987776543 5679
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCCCHHHH-------HHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEATMAEV-------EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
+|++|++.+++. |++||+.++........+ ........+.+.++.+ |++...+....+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999886 999999876421110000 0001111233455555 677777888899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999999876 58999999999999866 89999999999999999888754
No 222
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.4e-42 Score=377.41 Aligned_cols=224 Identities=29% Similarity=0.497 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH---HHh
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLR 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~---~lR 820 (987)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999953 3599999999999999999999999999999999999999999999999999876643 457
Q ss_pred cccEEEccccccccc-cHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 821 LKIGLVQQEPALFAA-SIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 821 ~~i~~VpQdp~lF~g-TIreNL~~~~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
++++|+||++.+|.+ |+++|+.++.. ..+. +.+.++++..++.+... . ....||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~----~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-------L----MPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-------C----ChhhCCHHHHHHH
Confidence 889999999999986 99999975421 1222 23445666666544322 2 2347999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999998866 8999999999999999999998
Q ss_pred cCCCchHHHHHH
Q 001980 970 SRPDGAYSRLLQ 981 (987)
Q Consensus 970 ~~~~g~f~~l~~ 981 (987)
+++...+..++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 765445555554
No 223
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-42 Score=375.62 Aligned_cols=225 Identities=31% Similarity=0.527 Sum_probs=189.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 359999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--CC-----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|+.++|++|++.+|+.|+++|+.++.. .. .++++.++++..+++... ...++ ....+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~----~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNLD----RNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHhc----cChhhCCHHHH
Confidence 667889999999999999999999986431 11 123456667777764321 11223 34467999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777999999999999866 899999999999999999999
Q ss_pred hcCCCchHHH
Q 001980 969 VSRPDGAYSR 978 (987)
Q Consensus 969 l~~~~g~f~~ 978 (987)
...+.-.|.+
T Consensus 234 ~~~~~~~~~~ 243 (251)
T PRK14251 234 FIAPKKQITS 243 (251)
T ss_pred HhCCCCHHHH
Confidence 8765444443
No 224
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-42 Score=381.98 Aligned_cols=217 Identities=32% Similarity=0.512 Sum_probs=184.3
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC----CCHHH
Q 001980 745 IELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR----LNLKS 818 (987)
Q Consensus 745 I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~l~~ 818 (987)
|+++|++++|++.. ..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996421 1359999999999999999999999999999999999999999999999999863 34667
Q ss_pred HhcccEEEcccc--ccccccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 819 LRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 819 lR~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
.|++++||||+| .+|+.|+++|+.++.. ..+.+ .+.++++.+++.+.+ .+ .....|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~----~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL------LA----RSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh------hh----CCcccCCHHHHH
Confidence 888999999998 6888999999986532 12333 345566666664211 12 234579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhH
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~e 967 (987)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|||+++.+. .||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998753 789999999999885 489999999999999999999
Q ss_pred HhcC
Q 001980 968 LVSR 971 (987)
Q Consensus 968 Ll~~ 971 (987)
+.++
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8754
No 225
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=380.08 Aligned_cols=220 Identities=30% Similarity=0.517 Sum_probs=184.7
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC--HHHHh
Q 001980 100 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ--LRWLR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~~ 175 (987)
|+++|++|+|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997422 135999999999999999999999999999999999999999999999999997653 34677
Q ss_pred cceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCc--ccccCCCCCCChHHHHHHHH
Q 001980 176 DQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS--TQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 176 ~~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~--t~~~~~g~~LSgGqkqRial 249 (987)
++|+||||+| .+|+.|++||+.++... .+.++..+. +.+.++.+ |+. +.....+.+||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 56788999999986321 122222211 12233333 554 45677788999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHHh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||||+.+|++|||||||++||+.+++.+.+.|.++.+ |+|||++||+++.+. .||||++|++|++++.|+.+++.+.
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998853 899999999999885 5999999999999999999988653
No 226
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-42 Score=381.18 Aligned_cols=217 Identities=25% Similarity=0.468 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC--------
Q 001980 744 EIELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR-------- 813 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~-------- 813 (987)
.|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999996432 1259999999999999999999999999999999999999999999999887632
Q ss_pred ----------------CCHHHHhcccEEEcccc--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcCch-hhHhh
Q 001980 814 ----------------LNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVH-GFVSA 868 (987)
Q Consensus 814 ----------------i~l~~lR~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd----~ei~~al~~a~l~-~~i~~ 868 (987)
.+...+|++|+||||+| .+|..|++|||.++.. ..+. +++.++++.+++. ++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~- 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ- 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-
Confidence 13467889999999986 6888999999987532 2233 3456667777664 3322
Q ss_pred CCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-
Q 001980 869 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR- 946 (987)
Q Consensus 869 lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~- 946 (987)
.....||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.
T Consensus 161 ----------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 161 ----------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 3345799999999999999999999999999999999999999999999875 4899999999999874
Q ss_pred ccCEEEEEeCCEEEEecChhHHhcC
Q 001980 947 GVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 947 ~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
.||||++|++|++++.|+++++.++
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 5899999999999999999998765
No 227
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2e-42 Score=369.60 Aligned_cols=212 Identities=29% Similarity=0.547 Sum_probs=181.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 789999999963 36999999999999999999999999999999999999999999999999998776544 45899
Q ss_pred EEcccccc-ccccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPAL-FAASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~l-F~gTIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+ +..|+++|+.++.. ..+. +++.+.++..++.+ ........||||||||++||||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-----------RADDKVRELNGGHRRRVEIARA 146 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHH
Confidence 99999987 56899999976421 1222 23344455444432 2334445799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|+++|+||||||||++||+.+...+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999999999875 47899999999999988999999999999999999999865
No 228
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-42 Score=375.07 Aligned_cols=224 Identities=32% Similarity=0.506 Sum_probs=190.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CC
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LN 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 815 (987)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 36999999999963 359999999999999999999999999999999999987 589999999999863 56
Q ss_pred HHHHhcccEEEccccccccccHHHHhccCCCC--C---CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEG--A---TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~--~---sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
...+|++++|+||++.+|..|++||+.++... . .++++.++++.+++.+.+. .........|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHHH
Confidence 67789999999999999999999999865321 1 1345666777777654332 1223344579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeC-----------CE
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQD-----------GR 958 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~-----------G~ 958 (987)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999998778899999999998854 899999996 67
Q ss_pred EEEecChhHHhcCCCchH
Q 001980 959 IVEQGSHSELVSRPDGAY 976 (987)
Q Consensus 959 ive~Gt~~eLl~~~~g~f 976 (987)
++|.|++++++..+...|
T Consensus 242 ~~~~~~~~~~~~~~~~~~ 259 (269)
T PRK14259 242 LVEFNETKKIFNSPKQKA 259 (269)
T ss_pred EEEeCCHHHHHhCcCChH
Confidence 999999999987644333
No 229
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=380.25 Aligned_cols=220 Identities=26% Similarity=0.501 Sum_probs=184.3
Q ss_pred EEEEeEEEECCCCCC--ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC----CCHHH
Q 001980 100 IEFKNVTFSYPSRPD--VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT----LQLRW 173 (987)
Q Consensus 100 i~~~~~~~~y~~~~~--~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 173 (987)
|+++|++|+|+.... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974321 258999999999999999999999999999999999999999999999999853 23456
Q ss_pred HhcceEEEcCCC--CCchhcHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHH
Q 001980 174 LRDQIGLVNQEP--ALFATTILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 174 ~~~~i~~v~Q~~--~l~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRia 248 (987)
+++.|+||+|+| .+|+.|+.||+.|+.... ..++... .+.+.++.+ |+. ....+.+.+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 788999999998 788889999999874321 2222211 112333333 543 3456778899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHHh
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||||+.+|+++||||||++||+.++..+.+.|.++. .|+|||++||+++.+. .||+|++|++|+++++|+++++...
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999999998875 4899999999999885 5999999999999999999998654
No 230
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=375.39 Aligned_cols=221 Identities=31% Similarity=0.509 Sum_probs=190.9
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CC
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LN 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 815 (987)
..|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 36999999999953 469999999999999999999999999999999999997 579999999999864 34
Q ss_pred HHHHhcccEEEccccccccccHHHHhccCCC--CC-----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
...+|+.++|+||++.+|.+|+++|+.++.. .. .++++.++++..++.+.+.. ........|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHH
Confidence 6678999999999999999999999986422 11 13446677778877655432 2345566899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhH
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~e 967 (987)
|||++|||||+++|++|||||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999998855 89999999999999999999
Q ss_pred HhcCCC
Q 001980 968 LVSRPD 973 (987)
Q Consensus 968 Ll~~~~ 973 (987)
+.+.+.
T Consensus 249 ~~~~~~ 254 (267)
T PRK14237 249 IFTNPK 254 (267)
T ss_pred HhcCCC
Confidence 986543
No 231
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-42 Score=377.20 Aligned_cols=216 Identities=31% Similarity=0.560 Sum_probs=188.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|+++ +.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 34699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcccc--ccccccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 824 GLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 824 ~~VpQdp--~lF~gTIreNL~~~~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
+|+||+| .++..|+++|+.++.. ..+.+ .+.++++..++.++.... ..+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4567899999986421 12333 345666777776654433 357999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 4899999999999888999999999999999999998764
No 232
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=374.06 Aligned_cols=223 Identities=33% Similarity=0.536 Sum_probs=189.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc---CCC--CCceEEECCccCCCC--CH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF---YDP--TAGKVMIDGKDIRRL--NL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl---~~p--~~G~I~idG~di~~i--~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999963 3599999999999999999999999999999999997 444 589999999998764 35
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||++.+|..|+++|+.++.. . ..+++++++++..++.+.+.. .....+..||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHH
Confidence 677899999999999999999999975421 1 123456677777777554432 22344568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999855 899999999999999999999
Q ss_pred hcCCCchH
Q 001980 969 VSRPDGAY 976 (987)
Q Consensus 969 l~~~~g~f 976 (987)
.+++...|
T Consensus 233 ~~~~~~~~ 240 (250)
T PRK14245 233 FTNPEKEA 240 (250)
T ss_pred hcCCCChH
Confidence 87654443
No 233
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-42 Score=376.15 Aligned_cols=223 Identities=33% Similarity=0.553 Sum_probs=191.6
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCC--C
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--L 814 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i 814 (987)
.+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 446999999999953 3599999999999999999999999999999999999984 89999999999875 4
Q ss_pred CHHHHhcccEEEccccccccccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 815 NLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 815 ~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
+...+|++++|+||++.+|.+|+++|+.++.. .. . ++.+.++++.+++.+.+.. .....+..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHH
Confidence 45678999999999999999999999976421 11 1 2346777777777654432 234456689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~ 966 (987)
||||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999998778999999999999865 8999999999999999999
Q ss_pred HHhcCCCc
Q 001980 967 ELVSRPDG 974 (987)
Q Consensus 967 eLl~~~~g 974 (987)
++.+++..
T Consensus 253 ~~~~~~~~ 260 (272)
T PRK14236 253 TLFTSPAK 260 (272)
T ss_pred HHhcCCCc
Confidence 99866443
No 234
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-42 Score=378.85 Aligned_cols=217 Identities=30% Similarity=0.516 Sum_probs=190.0
Q ss_pred cEEEEeEEEECCCCC---CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC-HHHH
Q 001980 744 EIELRHVDFAYPSRP---DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKSL 819 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~---~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-l~~l 819 (987)
-|+++|++++|++.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999996421 236999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hcccEEEccccc--cccccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 820 RLKIGLVQQEPA--LFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 820 R~~i~~VpQdp~--lF~gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
|++++|+||+|. +|..|+.+|+.++.. ..+ ++++.++++.+++.++..+.| ..||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 677789999986521 112 345777888888877665543 4799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHh
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
++|||||+++|++|||||||++||+.+...+.+.|++.. .++|||+|||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 378999999999999889999999999999999999997
Q ss_pred cC
Q 001980 970 SR 971 (987)
Q Consensus 970 ~~ 971 (987)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
No 235
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-42 Score=377.66 Aligned_cols=217 Identities=31% Similarity=0.549 Sum_probs=191.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC---ceEEECCccCCCCCHHHH
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA---GKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~---G~I~idG~di~~i~l~~l 819 (987)
+.|+++|++++|++. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 369999999999643 2359999999999999999999999999999999999999987 899999999988887788
Q ss_pred hcccEEEcccc--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 820 RLKIGLVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 820 R~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
|++++|+||+| .++..|++|||.++.. ..+. +++.++++.+++.++....| .+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHH
Confidence 99999999998 4678999999986522 2333 34667788888876655443 5799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHh
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|||++||+++.+..||+|++|++|++++.|++++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999998753 78999999999999889999999999999999999987
Q ss_pred cC
Q 001980 970 SR 971 (987)
Q Consensus 970 ~~ 971 (987)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 54
No 236
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=373.49 Aligned_cols=227 Identities=33% Similarity=0.535 Sum_probs=192.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCCC--CH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRL--NL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~l 816 (987)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 3589999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC---CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE---GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~---~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||+|.+|..|+++|+.++.. .. .++++.++++..++.+.+.. .......+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHH
Confidence 567889999999999999999999986421 11 23345667777777654322 13345568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998754 899999999999999999999
Q ss_pred hcCCCchHHHHH
Q 001980 969 VSRPDGAYSRLL 980 (987)
Q Consensus 969 l~~~~g~f~~l~ 980 (987)
.+++...|.+.+
T Consensus 233 ~~~~~~~~~~~~ 244 (250)
T PRK14262 233 VERPKNKLTEEY 244 (250)
T ss_pred HhCCCChHHHHH
Confidence 876544455543
No 237
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.4e-42 Score=360.68 Aligned_cols=200 Identities=36% Similarity=0.548 Sum_probs=181.7
Q ss_pred EEEEeEEEECCCCCC--ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 745 IELRHVDFAYPSRPD--VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~--~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
|+++||+++|++..+ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999964311 3599999999999999999999999999999999999999999999999 6
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
|+|+||+|.+|++|++||+.++.. .++++.+++++.+++.+++..+|.|+++.+.+.+..||+|||||++|||||+++|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987633 4566788888999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCE
Q 001980 903 AILLLDEATSALDAESECVLQE-ALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGR 958 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~-~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl~~G~ 958 (987)
+++||||||++||+++.+.+.+ .+++.. +++|||++||+++.+..||+|++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 456554 4689999999999998899999999985
No 238
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=376.07 Aligned_cols=222 Identities=30% Similarity=0.482 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999963 359999999999999999999999999999999999865 789999999999865 345
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC---C----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE---G----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~---~----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||++.+|.+|+++|+.++.. . ..++.+.++++..++.+.+.. .......+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD-------RLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH-------HHhcCcccCCHHHH
Confidence 567899999999999999999999985421 1 112345667777766432221 12334567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999876789999999999876 4899999999999999999999
Q ss_pred hcCCCch
Q 001980 969 VSRPDGA 975 (987)
Q Consensus 969 l~~~~g~ 975 (987)
+.++...
T Consensus 251 ~~~~~~~ 257 (268)
T PRK14248 251 FTSPKQQ 257 (268)
T ss_pred HhCCCCh
Confidence 8764433
No 239
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-42 Score=373.77 Aligned_cols=221 Identities=31% Similarity=0.502 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--C---CCceEEECCccCCCC--CH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--P---TAGKVMIDGKDIRRL--NL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--p---~~G~I~idG~di~~i--~l 816 (987)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 359999999999999999999999999999999999954 6 489999999998653 34
Q ss_pred HHHhcccEEEccccccccccHHHHhccCC---CC----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGK---EG----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~---~~----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|+.++|+||++.+|+.|++||+.++. +. ..++++.++++.+++.+.+.. ........||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHH
Confidence 56788999999999999999999997542 11 113445566777776543321 22344567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767999999999998765 899999999999999999999
Q ss_pred hcCCCc
Q 001980 969 VSRPDG 974 (987)
Q Consensus 969 l~~~~g 974 (987)
++.+..
T Consensus 235 ~~~~~~ 240 (252)
T PRK14239 235 FMNPKH 240 (252)
T ss_pred HhCCCC
Confidence 876543
No 240
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-42 Score=371.51 Aligned_cols=224 Identities=35% Similarity=0.599 Sum_probs=190.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCC--CC
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--LN 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~ 815 (987)
|.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 56999999999963 3599999999999999999999999999999999999863 68999999999875 45
Q ss_pred HHHHhcccEEEccccccccccHHHHhccCCC--C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
...+|++++|+||++.+|..|+++|+.++.. . ..++++.++++.+++.+.+.. ........|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHH
Confidence 6678999999999999999999999986421 1 123455666777776543321 1233455799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhH
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~e 967 (987)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998865 89999999999999999999
Q ss_pred HhcCCCchH
Q 001980 968 LVSRPDGAY 976 (987)
Q Consensus 968 Ll~~~~g~f 976 (987)
+..++...+
T Consensus 232 ~~~~~~~~~ 240 (250)
T PRK14240 232 LFTNPKDKR 240 (250)
T ss_pred HHhCCCChH
Confidence 986654444
No 241
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-42 Score=373.39 Aligned_cols=224 Identities=32% Similarity=0.494 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--C---CCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--P---TAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--i~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 359999999999999999999999999999999999997 3 58999999999864 455
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCCC---CCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEG---ATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~---~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||++.+|.+|+++|+.++... ..+ +++.++++..++.+++.. ........||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD-------RLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHH
Confidence 6788999999999999999999999764211 122 234556667776544321 12334557999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|+||||||||++||+.+...+++.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 899999999999999999999
Q ss_pred hcCCCchHH
Q 001980 969 VSRPDGAYS 977 (987)
Q Consensus 969 l~~~~g~f~ 977 (987)
+.++...|.
T Consensus 242 ~~~~~~~~~ 250 (259)
T PRK14274 242 FSNPDDQRT 250 (259)
T ss_pred hhCCCCHHH
Confidence 876554443
No 242
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-42 Score=388.66 Aligned_cols=220 Identities=38% Similarity=0.600 Sum_probs=186.7
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---Hh
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW---LR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 175 (987)
|+++|++|+|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... ++
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 346999999999999999999999999999999999999999999999999998776543 46
Q ss_pred cceEEEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 176 DQIGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
++|+|++|++.+|+ .|++||+.++... ....+..+ .+.+.++.+ |+.......+.+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 78999999999986 5999999875321 11222111 122344444 66666677788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+.+|+++||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998853 8999999999999876 899999999999999999998764
No 243
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9e-43 Score=364.16 Aligned_cols=199 Identities=28% Similarity=0.516 Sum_probs=174.4
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEE
Q 001980 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 825 (987)
Q Consensus 746 ~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~ 825 (987)
+++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.. ...|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999641 359999999999999999999999999999999999999999999999998864 456788999
Q ss_pred Ecccc--ccccccHHHHhccCCCCC--CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 826 VQQEP--ALFAASIFDNIAYGKEGA--TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 826 VpQdp--~lF~gTIreNL~~~~~~~--sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
+||+| .+|..|++||+.++.... .++++.++++..++.++....| ..||||||||++|||||+++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 467899999998754322 2357788888888877654443 36999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEE
Q 001980 902 PAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIV 960 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv 960 (987)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999874 57899999999999875 8999999999985
No 244
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.6e-42 Score=389.27 Aligned_cols=217 Identities=31% Similarity=0.506 Sum_probs=184.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 35999999999974 3489999999999999999999999999999999999999999999999999877654 467
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
|+||+|++.+|+. ||+|||.|+... ....+..+ .+.+.++.+ |+.........+|||||||||+|||||+
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~p~~LSgGq~QRVaLARaL~ 160 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP-----RVMEALRMV--QLEEFAQRKPHQLSGGQQQRVAIARAVV 160 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 9999999999976 999999987431 11111111 111223333 5555566677799999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++++.. +|+|++|++|+|++.|++++++.+
T Consensus 161 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999998853 8999999999998754 899999999999999999998764
No 245
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-42 Score=382.24 Aligned_cols=226 Identities=27% Similarity=0.437 Sum_probs=190.0
Q ss_pred cEEEEeEEEECCCCC-------CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH
Q 001980 744 EIELRHVDFAYPSRP-------DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~-------~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l 816 (987)
-|+++|++++|+.+. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2369999999999999999999999999999999999999999999999999988875
Q ss_pred H---HHhcccEEEccccc--ccc-ccHHHHhccCC---CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 001980 817 K---SLRLKIGLVQQEPA--LFA-ASIFDNIAYGK---EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883 (987)
Q Consensus 817 ~---~lR~~i~~VpQdp~--lF~-gTIreNL~~~~---~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 883 (987)
. .+|++|+||||+|. |+. -|+.+|+..+. .... .+.+.++++.+++.+ ..++... ..
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~p----~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRYP----HM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCCC----cc
Confidence 3 56889999999994 444 48888885321 1112 245677777777742 1233333 46
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEE
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIV 960 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv 960 (987)
||||||||++|||||+.+|++||+||||++||..+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 7899999999999975 8999999999999
Q ss_pred EecChhHHhcCCCchHHHH
Q 001980 961 EQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 961 e~Gt~~eLl~~~~g~f~~l 979 (987)
|.|+++++++++...|.+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EECCHHHHhcCCCCHHHHH
Confidence 9999999998776667654
No 246
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.3e-42 Score=388.84 Aligned_cols=217 Identities=28% Similarity=0.473 Sum_probs=186.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc--cEEEECCEeCCCCCHHHHh
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA--GHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~--G~i~~~g~~~~~~~~~~~~ 175 (987)
+.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...++. +
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~--~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH--K 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--H
Confidence 35899999999974 348999999999999999999999999999999999999999 9999999999776653 4
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
+.|+||+|++.+|+. ||+|||.|+... ....+..+ ...+.++.+ |++....+...+|||||||||+||||
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLARA 151 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIARA 151 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHHH
Confidence 689999999999976 999999987431 12122211 122334444 66666778888999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC---CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV---GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+.+|++||||||||+||+.+++.+.+.|+++.+ |.|+|+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998753 7899999999998765 899999999999999999999765
No 247
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-42 Score=371.42 Aligned_cols=225 Identities=29% Similarity=0.510 Sum_probs=190.5
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--C---CCceEEECCccCCCC--
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--P---TAGKVMIDGKDIRRL-- 814 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--p---~~G~I~idG~di~~i-- 814 (987)
+|.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++...
T Consensus 2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 367999999999963 359999999999999999999999999999999999986 4 689999999998653
Q ss_pred CHHHHhcccEEEcccccccc-ccHHHHhccCCC--C-CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 815 NLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--G-AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 815 ~l~~lR~~i~~VpQdp~lF~-gTIreNL~~~~~--~-~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
....+|++++|+||++.+|. .|+++|+.++.. . .+ ++.+.++++..++.+++..+ ....+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~ 151 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAMELSG 151 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCcCCH
Confidence 45577899999999999987 699999975421 1 11 23456677777776544321 2234567999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecCh
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~ 965 (987)
|||||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|+|++.|++
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998777899999999999855 899999999999999999
Q ss_pred hHHhcCCCchH
Q 001980 966 SELVSRPDGAY 976 (987)
Q Consensus 966 ~eLl~~~~g~f 976 (987)
+++...+...|
T Consensus 232 ~~~~~~~~~~~ 242 (252)
T PRK14256 232 KKIFTTPEKKQ 242 (252)
T ss_pred HHHHhCCCcHH
Confidence 99987655443
No 248
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-42 Score=376.09 Aligned_cols=222 Identities=32% Similarity=0.561 Sum_probs=189.4
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CC
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LN 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 815 (987)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35999999999963 359999999999999999999999999999999999997 689999999999865 34
Q ss_pred HHHHhcccEEEccccccccccHHHHhccCC-----CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGK-----EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~gTIreNL~~~~-----~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
...+|++++|+||++.+|..|+++|+.++. +...+++++++++..++...+... ......+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ-------LDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHH-------HhCCcccCCHHHHH
Confidence 567889999999999999899999997542 111245677788888775443221 23345679999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEE-EEeCCEEEEecChhHH
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIG-VVQDGRIVEQGSHSEL 968 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Ii-vl~~G~ive~Gt~~eL 968 (987)
|++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 89975 5799999999999999
Q ss_pred hcCCCc
Q 001980 969 VSRPDG 974 (987)
Q Consensus 969 l~~~~g 974 (987)
.+++..
T Consensus 268 ~~~~~~ 273 (285)
T PRK14254 268 FENPES 273 (285)
T ss_pred HhCcCC
Confidence 866443
No 249
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-42 Score=389.69 Aligned_cols=206 Identities=38% Similarity=0.631 Sum_probs=180.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH----hcccEEEcccccccc-c
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL----RLKIGLVQQEPALFA-A 835 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l----R~~i~~VpQdp~lF~-g 835 (987)
++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+.+++...+ |++++||||++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998876654 468999999999986 5
Q ss_pred cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 001980 836 SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 909 (987)
Q Consensus 836 TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDE 909 (987)
|++||+.++.. ..+ ++++.++++.+++.++..+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999986521 112 345677888888877655544 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001980 910 ATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977 (987)
Q Consensus 910 aTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~ 977 (987)
||++||+.+.+.+++.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++...|.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v 261 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV 261 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHH
Confidence 999999999999999999874 47899999999998865 899999999999999999999887655443
No 250
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-42 Score=364.00 Aligned_cols=203 Identities=26% Similarity=0.501 Sum_probs=178.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++||+++|++ .++|+|+||+|++| ++||+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999953 35999999999999 99999999999999999999999999999999999998777 77899999
Q ss_pred EEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||+|.+|.+ |++||+.+... ..+ ++++.++++..++.++.+ +.+ ..||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------KKI----GSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------Cch----hhCCHHHHHHHHHHHH
Confidence 99999999876 99999975311 111 345677788888765533 333 4699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
|+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. +|++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998777999999999999865 8999999999999865
No 251
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.1e-42 Score=372.93 Aligned_cols=219 Identities=29% Similarity=0.505 Sum_probs=187.2
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC-------
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL------- 814 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i------- 814 (987)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 357999999999963 3599999999999999999999999999999999999999999999999988642
Q ss_pred ------CHHHHhcccEEEcccccccc-ccHHHHhccCC---CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCC
Q 001980 815 ------NLKSLRLKIGLVQQEPALFA-ASIFDNIAYGK---EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGER 880 (987)
Q Consensus 815 ------~l~~lR~~i~~VpQdp~lF~-gTIreNL~~~~---~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~ 880 (987)
....+|++++|+||++.+|. .|++||+.++. .... ++++.++++..++.+... ...
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCC
Confidence 13467889999999999997 59999997531 1111 234566677776655431 233
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCE
Q 001980 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGR 958 (987)
Q Consensus 881 G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ 958 (987)
...||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 45799999999999999999999999999999999999999999999875 48999999999999986 89999999999
Q ss_pred EEEecChhHHhcCCC
Q 001980 959 IVEQGSHSELVSRPD 973 (987)
Q Consensus 959 ive~Gt~~eLl~~~~ 973 (987)
+++.|+++++++.+.
T Consensus 230 i~~~~~~~~~~~~~~ 244 (257)
T PRK10619 230 IEEEGAPEQLFGNPQ 244 (257)
T ss_pred EEEeCCHHHhhhCcc
Confidence 999999999986543
No 252
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.8e-42 Score=387.26 Aligned_cols=215 Identities=33% Similarity=0.522 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++ .+++|+
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 789999999974 348999999999999999999999999999999999999999999999999977654 346899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 180 LVNQEPALFAT-TILENILYGKPE------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
||+|++.+|+. |++||+.|+... .+.++..+ .+.+.++.+ |+.......+.+||||||||++||||
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalArA 150 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALARA 150 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 99999999975 999999987431 11111111 122334444 55555677788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+.+|+++||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++..+
T Consensus 151 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 151 LAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998853 7899999999998765 899999999999999999998764
No 253
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.9e-42 Score=365.70 Aligned_cols=207 Identities=26% Similarity=0.478 Sum_probs=177.9
Q ss_pred EEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 745 IELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
|+++||+++|++... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999964311 159999999999999999999999999999999999999999999999999976 456778999
Q ss_pred EEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+|+||+|.+|.+ |++||+.++.. ..+ ++++.++++..++.+.... ...+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999985 99999975321 111 3455667777777655432 34579999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
|++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. +|+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999875 47899999999998865 7999999999998865
No 254
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-42 Score=376.28 Aligned_cols=214 Identities=31% Similarity=0.534 Sum_probs=188.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
++++||+++|+++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 25999999999999999999999999999999999999999999999999998878888899999
Q ss_pred EEcccc--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 825 LVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 825 ~VpQdp--~lF~gTIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
|+||+| .+|..|+++|+.++.. ..+. +.+.++++..++.++....| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 4788999999975421 1222 34677788888776654433 479999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999998753 789999999999985 5899999999999999999999764
No 255
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-42 Score=378.97 Aligned_cols=220 Identities=31% Similarity=0.537 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC----CCHHH
Q 001980 100 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT----LQLRW 173 (987)
Q Consensus 100 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 173 (987)
++++|++|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997422 1359999999999999999999999999999999999999999999999999863 23456
Q ss_pred HhcceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHH
Q 001980 174 LRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 174 ~~~~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRia 248 (987)
++++|+||+|+| .+|+.||+|||.|+... .+.++..+. +.+.++.+ |+. ......+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK-----AREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 777899999998 57888999999986321 122222111 12334443 554 3346677899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|||||+.+|+++||||||++||+.++..+.+.|+++. .|.|||++||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999999885 38999999999999865 89999999999999999998865
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
.
T Consensus 236 ~ 236 (290)
T PRK13634 236 D 236 (290)
T ss_pred C
Confidence 4
No 256
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-42 Score=377.87 Aligned_cols=220 Identities=34% Similarity=0.572 Sum_probs=186.0
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHH
Q 001980 100 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL----QLRW 173 (987)
Q Consensus 100 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 173 (987)
++++|++|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997422 13599999999999999999999999999999999999999999999999998653 3456
Q ss_pred HhcceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCCCCChHHHHHHH
Q 001980 174 LRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYST-QVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 174 ~~~~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~~LSgGqkqRia 248 (987)
++++||||||+| .+|+.|+.|||.++... .+.++..+. +.+.+..+ |+.+ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 67888999999986321 122222221 22344444 7763 456788999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHH
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|||||+.+|+++||||||++||+.++..+.+.|+++. .|+|+|++||+++.+. .||||++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999885 3899999999999875 589999999999999999998865
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
No 257
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=372.13 Aligned_cols=217 Identities=31% Similarity=0.466 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEeCCCCCHHHHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD---PNAGHVLLDNVDIKTLQLRWLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~~ 176 (987)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+....++
T Consensus 3 ~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 3 AKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred eeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 789999999974 358999999999999999999999999999999999984 69999999999998877777788
Q ss_pred ceEEEcCCCCCchhcHHHHHhcCCCCC----C-H---HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHH
Q 001980 177 QIGLVNQEPALFATTILENILYGKPEA----T-M---AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~tv~eni~~~~~~~----~-~---~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRia 248 (987)
.|+|++|++.+|+.|++||+.++.... . . +++.+.++..++.+ .+.+...+.+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFE-------EVKDKLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCCh-------hhhHHhcCCcccCCHHHHHHHH
Confidence 999999999999999999998753210 0 0 11222222222211 1123456678899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||||+++|+++||||||++||+.++..+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++...
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999988778999999999998865 899999999999999999988653
No 258
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2e-42 Score=362.48 Aligned_cols=203 Identities=27% Similarity=0.468 Sum_probs=179.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999953 3699999999999999999999999999999999999999999999999998765 56788999
Q ss_pred EEccccccc-cccHHHHhccCC--CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 825 LVQQEPALF-AASIFDNIAYGK--EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 825 ~VpQdp~lF-~gTIreNL~~~~--~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
|+||++.+| ..|++||+.++. ...+++++.++++..++.+..... ...||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcC
Confidence 999999887 579999997642 123566788888888887655432 346999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 902 PAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999865 47899999999999865 8999999999999865
No 259
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-42 Score=374.68 Aligned_cols=221 Identities=28% Similarity=0.454 Sum_probs=191.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5999999999963 3699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcccccccc-ccHHHHhccCCC----------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE----------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~----------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+|+||++.+|. .|+++|+.++.. ...++++.++++.+++.++....| .+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence 99999987765 499999986421 112345778888888866544332 36999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 3799999999999986 58999999999999999999986
Q ss_pred cCCCchHHHHH
Q 001980 970 SRPDGAYSRLL 980 (987)
Q Consensus 970 ~~~~g~f~~l~ 980 (987)
.. .....++
T Consensus 237 ~~--~~~~~~~ 245 (265)
T PRK10575 237 RG--ETLEQIY 245 (265)
T ss_pred CH--HHHHHHh
Confidence 43 3344444
No 260
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.2e-42 Score=369.86 Aligned_cols=212 Identities=24% Similarity=0.446 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH-hccc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l-R~~i 823 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 359999999999999999999999999999999999999999999999999988776654 5679
Q ss_pred EEEccccccccc-cHHHHhccCCCC--------------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKEG--------------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~~--------------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
+|+||++.+|.+ |++||+.++... ..++++.++++..++.+. .......|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE-----------ADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHH
Confidence 999999999986 999999865321 012344555555554332 233445799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhH
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~e 967 (987)
|||++||||++++|++|||||||++||+++...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999875 89999999999999999999
Q ss_pred Hhc
Q 001980 968 LVS 970 (987)
Q Consensus 968 Ll~ 970 (987)
++.
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 875
No 261
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-42 Score=365.03 Aligned_cols=209 Identities=27% Similarity=0.509 Sum_probs=180.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999953 3599999999999999999999999999999999999999999999999988763 356788999
Q ss_pred EEccccccccc-cHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~--~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+|.. |+++|+.++.. .. .++++.++++..++.++.... + ..||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~----~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-------V----KTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-------h----hhCCHHHHHHHHHHHH
Confidence 99999998874 99999975311 11 234567778888876654332 2 3699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
++.+|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999998753 7899999999999865 899999999999999998875
No 262
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-42 Score=386.66 Aligned_cols=220 Identities=33% Similarity=0.518 Sum_probs=191.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
..|+++|++++|.+ .++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+++. .|+.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999953 358999999999999999999999999999999999999999999999999987764 4789
Q ss_pred cEEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 823 IGLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 823 i~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
++||+|++.+|.. |++|||.++.. ..+ .+++.++++..++.++.++.| .+||||||||++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999975 99999987632 122 234567777777766554443 46999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|||+++|++||||||||+||..+...+.+.|++.. .+.|+|+|||+++.+. -+|+|++|++|++++.|+|+++..++
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999998888764 3789999999999875 48999999999999999999999887
Q ss_pred CchHHH
Q 001980 973 DGAYSR 978 (987)
Q Consensus 973 ~g~f~~ 978 (987)
...|..
T Consensus 242 ~~~~~a 247 (377)
T PRK11607 242 TTRYSA 247 (377)
T ss_pred ccHHHH
Confidence 766543
No 263
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.3e-42 Score=367.00 Aligned_cols=204 Identities=35% Similarity=0.506 Sum_probs=174.1
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH----H
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS----L 819 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~----l 819 (987)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 136999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hcccEEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 820 RLKIGLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 820 R~~i~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
|++++|+||++.+|.+ |++||+.++.. ... ++++.++++..++.+... ....+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHHHHHH
Confidence 6789999999999976 99999986432 111 234566677766654433 23357999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEE
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRI 959 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~i 959 (987)
+|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 7899999999999888999999999974
No 264
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.1e-42 Score=352.58 Aligned_cols=178 Identities=34% Similarity=0.642 Sum_probs=166.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++. +.++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999643 23599999999999999999999999999999999999999999999999988776 667889999
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
|+||+|.+|+.|++||+ ...||+|||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 347999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEec
Q 001980 905 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 905 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~G 963 (987)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999889999999999999865
No 265
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.5e-42 Score=380.70 Aligned_cols=213 Identities=28% Similarity=0.512 Sum_probs=184.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.|+|.|+...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999953 35999999999999999999999999999999999999999999999999998755 4578999
Q ss_pred EEEcccccccc-ccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+|+||++.+|. .|++||+.+... ..+.. .+.++++..++. +..+++++ +||+|||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~----~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-------NKADAKVG----ELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-------hHhcCchh----hCCHHHHHHHHHHH
Confidence 99999999885 699999975321 12222 334555555543 34555554 69999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||+++|++|+|||||++||+.+...+++.|+++. +++|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999975 47899999999999865 899999999999999999999754
No 266
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-42 Score=343.63 Aligned_cols=221 Identities=30% Similarity=0.458 Sum_probs=191.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-Hhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 177 (987)
.++++|++..|+. ..+|++|||++++||+++|+|+||+|||||+|+|+|+.+|.+|+|.++|+|++..++.. .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4789999999974 45999999999999999999999999999999999999999999999999999998765 5667
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|+||||.-.+|+. ||+||+..|......++.. ....++..+.+| -+......++.+|||||||-+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~----~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ----ERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccc----cccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999977 9999999874322211111 111334556677 466778889999999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
|++|+|||||.+|-|.-.+.|++.|+++++ +.||++|.++...... +||.|+|++|+|+.+|+.+++..+.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 999999999999999999999999999974 6799999999998654 8999999999999999999997653
No 267
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-42 Score=374.05 Aligned_cols=214 Identities=30% Similarity=0.542 Sum_probs=186.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC-HHHHhccc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKSLRLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-l~~lR~~i 823 (987)
|+++|++++|++ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|+++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999953 235999999999999999999999999999999999999999999999999998775 46788899
Q ss_pred EEEccccc--cccccHHHHhccCCCC--CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 824 GLVQQEPA--LFAASIFDNIAYGKEG--AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 824 ~~VpQdp~--lF~gTIreNL~~~~~~--~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
+|+||+|. ++..|+++||.++... .+ ++.+.++++..++.++... ....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHH
Confidence 99999985 5778999999865321 22 2345666777776655433 2357999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|||+++|+||||||||++||+.+...+++.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999999865 48999999999999988999999999999999999998754
No 268
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3e-42 Score=367.77 Aligned_cols=213 Identities=26% Similarity=0.486 Sum_probs=181.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH-hccc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l-R~~i 823 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999963 359999999999999999999999999999999999999999999999999988776554 5789
Q ss_pred EEEccccccccc-cHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+|+||++.+|.+ |+++|+.++.. .... +++.+.++..++.+ .......+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-----------LRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHHHH
Confidence 999999999986 99999986432 1121 22334444444433 233445679999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 223 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcC
Confidence 9999999999999999999999999999999875 47899999999987755 899999999999999999998653
No 269
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1e-42 Score=366.95 Aligned_cols=207 Identities=28% Similarity=0.484 Sum_probs=171.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~~ 176 (987)
++++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+++
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 23589999999999999999999999999999999999999999999999998766543 3677
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+++|++|++.++.. |++||+.++... ...+... ..+.+.++.+ |+.........+||||||||++|||||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral 153 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDAN-----ERVSAALEKV--GLEGKAHALPMQLSGGEQQRVAIARAI 153 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 89999999998865 999999875211 1111111 1112233333 444455666679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEE
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQV 314 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 314 (987)
+.+|+++||||||++||+.+++.+.+.|.++. .++|+|++||+++.+.. ||++++|++|++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999875 48999999999999875 899999999974
No 270
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-42 Score=370.45 Aligned_cols=221 Identities=35% Similarity=0.557 Sum_probs=182.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---HHHHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ---LRWLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~~~ 176 (987)
++++|++++|++. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4689999999741 35899999999999999999999999999999999999999999999999988766 455677
Q ss_pred ceEEEcCCCCCch-hcHHHHHhcCCCCCC--HHHH---HHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 177 QIGLVNQEPALFA-TTILENILYGKPEAT--MAEV---EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 177 ~i~~v~Q~~~l~~-~tv~eni~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
.++|++|++.+|+ .|++||+.++..... .... ........+.+.++.+ |+.......+.+||||||||++||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHH
Confidence 8999999998887 599999987532100 0000 0000011122334444 565566778889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHH
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
|||+.+|+++||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999999875 3899999999999988 48999999999999999988863
No 271
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-42 Score=373.68 Aligned_cols=223 Identities=29% Similarity=0.510 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~l 816 (987)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 359999999999999999999999999999999999987 699999999999853 456
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--CCCH-----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GATE-----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~sd-----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||++.+|..|+++|+.++.. +.++ +.+.++++..++.+.+ .......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcccCCHHHH
Confidence 678899999999999999999999986421 1221 2234455555443222 2223445568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 899999999999999999999
Q ss_pred hcCCCchH
Q 001980 969 VSRPDGAY 976 (987)
Q Consensus 969 l~~~~g~f 976 (987)
..++...|
T Consensus 254 ~~~~~~~~ 261 (271)
T PRK14238 254 FSNPSDKR 261 (271)
T ss_pred HcCCCCHH
Confidence 87654333
No 272
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-42 Score=373.49 Aligned_cols=216 Identities=30% Similarity=0.481 Sum_probs=187.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|++. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999643 23589999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccccc--cccccHHHHhccCCCC--CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 824 GLVQQEPA--LFAASIFDNIAYGKEG--AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 824 ~~VpQdp~--lF~gTIreNL~~~~~~--~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
+|+||+|. ++..|+++|+.++... .. ++++.++++..++.++.. ....+||+|||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 4556899999765321 12 234566677777655433 23457999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 7899999999999888999999999999999999998765
No 273
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-42 Score=370.34 Aligned_cols=214 Identities=35% Similarity=0.544 Sum_probs=180.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999974 358999999999999999999999999999999999999999999999999876543 246799
Q ss_pred EEcCCCCCch-hcHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 180 LVNQEPALFA-TTILENILYGKPEA------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 180 ~v~Q~~~l~~-~tv~eni~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
|++|+|.+++ .|++||+.++.... ...+.. ..+.+.++.+ |+.........+||||||||++||||
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~a 150 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARA 150 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999999886 49999998763211 111111 1122334444 55555667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|+.+|+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 151 LAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 9999999999999999999999999999998853 7899999999998765 89999999999999999988754
No 274
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-42 Score=357.36 Aligned_cols=217 Identities=36% Similarity=0.587 Sum_probs=191.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCc---cCCCCCHHHHh
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK---DIRRLNLKSLR 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~---di~~i~l~~lR 820 (987)
.|+++|++..|+. .++++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.+||. |.+++..+ .
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--D 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--h
Confidence 4788999999963 46899999999999999999999999999999999999999999999999 87775544 4
Q ss_pred cccEEEccccccc-cccHHHHhccCCC--------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 821 LKIGLVQQEPALF-AASIFDNIAYGKE--------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 821 ~~i~~VpQdp~lF-~gTIreNL~~~~~--------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
++||+|+|+..|| ..||++||.||.. ...+..+.+.|+.+++.++-++-| ..||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 7899999999988 5799999999862 123445666788888877766555 5799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHH
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eL 968 (987)
+||||||..+|++|+||||.++||+.-.+.+++-|++... +.|+++|||+.+.+. -||||+||++|+|...|+|+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999998753 789999999998765 5899999999999999999999
Q ss_pred hcCCCchH
Q 001980 969 VSRPDGAY 976 (987)
Q Consensus 969 l~~~~g~f 976 (987)
...|++.|
T Consensus 226 ~~~P~s~f 233 (345)
T COG1118 226 YDHPASRF 233 (345)
T ss_pred hcCCCccc
Confidence 99888765
No 275
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.3e-42 Score=380.94 Aligned_cols=218 Identities=27% Similarity=0.461 Sum_probs=182.7
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 35999999999973 35999999999999999999999999999999999999999999999999987654 356788
Q ss_pred eEEEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 178 IGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 178 i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
|||+||++.++. .|++||+.+.... ....+.... +.+.++.+ |+.........+||||||||++|||||+
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFA--KLENKADAKVGELSGGMKRRLTLARALV 154 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence 999999999886 4999999863221 111222111 12233333 4444445566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|++++|||||++||+.+++.+++.|+++. +|+|+|++||+++++.. ||||++|++|++++.|+++++.+.
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999985 48999999999999976 899999999999999999998653
No 276
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-42 Score=371.64 Aligned_cols=223 Identities=31% Similarity=0.491 Sum_probs=190.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCC--CC
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--LN 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~ 815 (987)
+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36999999999953 3599999999999999999999999999999999999985 48999999999864 45
Q ss_pred HHHHhcccEEEccccccccccHHHHhccCCC------CCC-HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGKE------GAT-EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~------~~s-d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
...+|++++|+||++.+|..|++||+.++.. +.. ++.+.++++.+++.+++... + ...+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---L----NKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---h----cCCcccCCHHH
Confidence 5678899999999999999999999976421 111 23456777888876554322 2 33455799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEe-----CCEEEEe
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQ-----DGRIVEQ 962 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~-----~G~ive~ 962 (987)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999998777999999999999865 79999998 5999999
Q ss_pred cChhHHhcCCCch
Q 001980 963 GSHSELVSRPDGA 975 (987)
Q Consensus 963 Gt~~eLl~~~~g~ 975 (987)
|+++++.+.+...
T Consensus 236 ~~~~~~~~~~~~~ 248 (259)
T PRK14260 236 GVTTQIFSNPLDS 248 (259)
T ss_pred CCHHHHhcCCCCh
Confidence 9999998764443
No 277
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-42 Score=370.25 Aligned_cols=228 Identities=28% Similarity=0.511 Sum_probs=192.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCCC--CH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRL--NL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+.+| ++|+|.+||.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 3599999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
...|+.++|+||++.+|+.|++||+.++.. . ..++.+.++++.+++.+.+. +.....+..||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHH
Confidence 677889999999999999999999986521 1 11234556666666644332 223455668999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++||||++.+|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999998777999999999999865 899999999999999999999
Q ss_pred hcCCCchHHHHHH
Q 001980 969 VSRPDGAYSRLLQ 981 (987)
Q Consensus 969 l~~~~g~f~~l~~ 981 (987)
.+++...+.+.+.
T Consensus 236 ~~~~~~~~~~~~~ 248 (253)
T PRK14261 236 FENPHEELTENYI 248 (253)
T ss_pred HhCCCcHHHHHHh
Confidence 8765545555443
No 278
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.6e-42 Score=364.35 Aligned_cols=205 Identities=28% Similarity=0.489 Sum_probs=174.0
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---Hh
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR 820 (987)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 136999999999999999999999999999999999999999999999999998877654 34
Q ss_pred -cccEEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 821 -LKIGLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 821 -~~i~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
++++|+||++.+|. .|++||+.++.. ... ++++.++++..++.+... .....||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-----------HRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 68999999999985 699999976321 111 234556666666544333 23357999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEE
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G~iv 960 (987)
+|||||+++|+||||||||++||+.+...+.+.|++.. .++|+|+|||+++.+..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999875 378999999999999889999999999986
No 279
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.6e-42 Score=370.53 Aligned_cols=218 Identities=33% Similarity=0.519 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC--------H
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN--------L 816 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--------l 816 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999963 35999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcccEEEcccccccc-ccHHHHhccCC---CCCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 817 KSLRLKIGLVQQEPALFA-ASIFDNIAYGK---EGATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~-gTIreNL~~~~---~~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
..+|++++||||++.+|. .|++||+.++. ..... +.+.++++..++.+. .......|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChHH
Confidence 567889999999999885 69999997531 11222 234445555554432 233456799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~ 966 (987)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 47899999999999865 8999999999999999999
Q ss_pred HHhcCCCchH
Q 001980 967 ELVSRPDGAY 976 (987)
Q Consensus 967 eLl~~~~g~f 976 (987)
++.+.+.-.|
T Consensus 230 ~~~~~~~~~~ 239 (250)
T PRK11264 230 ALFADPQQPR 239 (250)
T ss_pred HHhcCCCCHH
Confidence 9976543333
No 280
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-42 Score=378.52 Aligned_cols=220 Identities=26% Similarity=0.478 Sum_probs=182.8
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC---------
Q 001980 100 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT--------- 168 (987)
Q Consensus 100 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~--------- 168 (987)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1358999999999999999999999999999999999999999999999877532
Q ss_pred ---------------CCHHHHhcceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCc
Q 001980 169 ---------------LQLRWLRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS 229 (987)
Q Consensus 169 ---------------~~~~~~~~~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~ 229 (987)
.+...++++||||+|+| .+|..||+|||.|+... ...++..+. +.+.++.+ |++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELV--GLD 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCC
Confidence 13456778899999986 57788999999987431 222222211 12233443 554
Q ss_pred -ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccc-cCCEE
Q 001980 230 -TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIR-NVDTV 306 (987)
Q Consensus 230 -t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~i 306 (987)
....+...+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.++. .|+|||+|||+++.+. .||||
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 45677888999999999999999999999999999999999999999999999885 4899999999999875 59999
Q ss_pred EEEeCCEEEEecChHHHHHh
Q 001980 307 AVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 307 ~~l~~G~i~~~g~~~~l~~~ 326 (987)
++|++|++++.|+.+++.+.
T Consensus 236 ~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 99999999999999998654
No 281
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-43 Score=337.98 Aligned_cols=220 Identities=32% Similarity=0.482 Sum_probs=186.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
+++.+++++|++ ...+++|+||+++.||+++|.|||||||||+|++|.+++.|++|.|++||.|... ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 688999999985 3458999999999999999999999999999999999999999999999998765 4556788999
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 180 LVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
.++-+..++.. |++|||.|...-....+-....+.+ +..+.+ ++...+..+..++|-|+||||+|||||++||+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~---~l~k~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIA---ELSKRL--QLLEYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHH---HHHHHh--ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 99977778765 9999999753211111111122222 333333 55666677788999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhC-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMV-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+++||||||+||..+.+.+.+.+.+++. |++||+.||.+++++. ||+|+++++|+++..|+.+++.+..
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 9999999999999999999999999875 9999999999999985 9999999999999999999987653
No 282
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-42 Score=370.65 Aligned_cols=223 Identities=31% Similarity=0.491 Sum_probs=190.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~l 816 (987)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999953 359999999999999999999999999999999999986 479999999999853 456
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCCC--C---CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEG--A---TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~--~---sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
..+|++++|+||++.+|+.|+++|+.++... . .++++.++++.+++.+.+... ....+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-------LKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-------hcCCcccCCHHHHHH
Confidence 6788999999999999989999999865321 1 134456667777776554321 234456799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEe---------CCEEEE
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQ---------DGRIVE 961 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~---------~G~ive 961 (987)
++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||+|++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998777899999999998755 79999998 899999
Q ss_pred ecChhHHhcCCCchH
Q 001980 962 QGSHSELVSRPDGAY 976 (987)
Q Consensus 962 ~Gt~~eLl~~~~g~f 976 (987)
.|+++++.+.+...|
T Consensus 240 ~~~~~~~~~~~~~~~ 254 (264)
T PRK14243 240 FDRTEKIFNSPQQQA 254 (264)
T ss_pred eCCHHHHHhCCCcHH
Confidence 999999987654333
No 283
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-42 Score=364.43 Aligned_cols=207 Identities=37% Similarity=0.590 Sum_probs=173.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 468999999974 358999999999999999999999999999999999999999999999999876543 356899
Q ss_pred EEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.++. .|++||+.++... .......+ .+.+.++.+ |+.........+||||||||++|||||+.+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 4999999875321 11111111 122334444 566666777789999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|+++||||||++||+.+++.+.+.|.++. .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999875 38999999999998765 8999999999998765
No 284
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-42 Score=369.09 Aligned_cols=220 Identities=35% Similarity=0.603 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-----CceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-----AGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--i~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 35999999999999999999999999999999999999997 6999999999865 345
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|+.++||||+|.+|..|++||+.++.. .. . ++.+.++++..++++.+.. .....+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHH
Confidence 678999999999999999999999986531 11 1 2334556666676554432 23445668999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987668999999999999876 699999999999999999999
Q ss_pred hcCCC
Q 001980 969 VSRPD 973 (987)
Q Consensus 969 l~~~~ 973 (987)
...+.
T Consensus 234 ~~~~~ 238 (251)
T PRK14249 234 FSRPR 238 (251)
T ss_pred HhCCC
Confidence 76543
No 285
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-42 Score=374.36 Aligned_cols=220 Identities=31% Similarity=0.509 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999742 24589999999999999999999999999999999999999999999999999887777778889
Q ss_pred EEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 GLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|++|+| .+++.|++|||.++... ....+..+ .+.+.+..+ |+...+.....+||||||||++|||||+
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE-----RVDQALRQV--GMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHH-----HHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 35567999999886321 12221111 112223332 4554556667799999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999998863 7999999999999888999999999999999999888654
No 286
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-42 Score=367.07 Aligned_cols=216 Identities=37% Similarity=0.604 Sum_probs=184.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++|+|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 3889999999974 3489999999999999999999999999999999999999999999999999877777778899
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
+|++|++.+|+.|++||+.++.......+ ..+.+.++.+ |+. ......+.+||||||||++|||||+.+|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKN-------VDVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHH-------HHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999998999999987642111110 1112333333 443 2445677899999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+++||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999875 38999999999999875 899999999999999999988653
No 287
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.7e-42 Score=367.28 Aligned_cols=214 Identities=30% Similarity=0.518 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC--CHHHHhcc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL--NLKSLRLK 822 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i--~l~~lR~~ 822 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999963 3599999999999999999999999999999999999999999999999999864 34567889
Q ss_pred cEEEcccccccc-ccHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 823 IGLVQQEPALFA-ASIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 823 i~~VpQdp~lF~-gTIreNL~~~~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
++|+||++.+|. .|+++|+.++.. ..+. +.+.++++..++.+... .....||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-----------HYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-----------cChhhcCHHHHHHHHH
Confidence 999999998885 699999976421 1122 23445555555544332 3345799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|||++++|++|||||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.+
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 999999999999999999999999999999999875 47899999999999865 8999999999999999999997653
No 288
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=7.3e-42 Score=371.27 Aligned_cols=226 Identities=30% Similarity=0.447 Sum_probs=186.6
Q ss_pred EEEEeEEEECCCC------CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH
Q 001980 745 IELRHVDFAYPSR------PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 818 (987)
Q Consensus 745 I~f~~vsf~Y~~~------~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~ 818 (987)
|+++||+++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 1346999999999999999999999999999999999999999999999999998876543
Q ss_pred ---HhcccEEEccccc--cc-cccHHHHhccCCC---C----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 001980 819 ---LRLKIGLVQQEPA--LF-AASIFDNIAYGKE---G----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 885 (987)
Q Consensus 819 ---lR~~i~~VpQdp~--lF-~gTIreNL~~~~~---~----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 885 (987)
+|+.++|+||+|. ++ ..|+++|+.++.. . ..++++.++++..++.+. .....+..||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhhCC
Confidence 6788999999983 44 4799999864311 1 123345666666665321 1223445799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 001980 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQ 962 (987)
Q Consensus 886 gGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~ 962 (987)
||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998753 7899999999999975 899999999999999
Q ss_pred cChhHHhcCCCchHHHHH
Q 001980 963 GSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 963 Gt~~eLl~~~~g~f~~l~ 980 (987)
|++++++..++..++.+.
T Consensus 233 g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred CCHHHHcCCCCHHHHHHH
Confidence 999999875333444443
No 289
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-42 Score=368.90 Aligned_cols=220 Identities=32% Similarity=0.526 Sum_probs=188.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCCC--CH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRL--NL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 3599999999999999999999999999999999999975 799999999999653 34
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||++.+|..|+++|+.++.. .. + ++++.++++.+++.+.+... .......||+|||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-------LKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-------hhCCcccCCHHHH
Confidence 567899999999999999999999986421 11 1 23456677777775433221 2334567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999865 899999999999999999999
Q ss_pred hcCCC
Q 001980 969 VSRPD 973 (987)
Q Consensus 969 l~~~~ 973 (987)
...+.
T Consensus 234 ~~~~~ 238 (251)
T PRK14270 234 FLEPQ 238 (251)
T ss_pred hcCCC
Confidence 76543
No 290
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-42 Score=374.11 Aligned_cols=216 Identities=29% Similarity=0.516 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++|+|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+..+++++|
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 3489999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 GLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|++|+| .++..|++||+.++... ....+..+. +.+.++.+ |+.........+||||||||++|||||+
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LSgG~~qrv~laraL~ 154 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR-----VEEALKAV--RMWDFRDKPPYHLSYGQKKRVAIAGVLA 154 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999998 56778999999986321 111111111 12223333 4444455566799999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHH
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 323 (987)
.+|+++||||||++||+.++..+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999885 4899999999999985 5999999999999999998654
No 291
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.3e-42 Score=364.99 Aligned_cols=216 Identities=31% Similarity=0.464 Sum_probs=179.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcce
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~i 178 (987)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999974 358999999999999999999999999999999999999999999999999987776543 5679
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
+|++|++.+|+. |++||+.++.......+.... +.+.++.++ +++......+.+||||||||++|||||+.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999886 999999886432211111111 111222221 2333456677899999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999875 48999999999998765 8999999999999999887764
No 292
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-42 Score=367.80 Aligned_cols=219 Identities=37% Similarity=0.581 Sum_probs=183.6
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHh
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~ 175 (987)
|+++|++++|++.. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997431 12589999999999999999999999999999999999999999999999998776543 346
Q ss_pred cceEEEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 176 DQIGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
+.++|++|++.+|+ .|++||+.++... ....... ..+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-----ERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 78999999999997 4999999875321 1111111 1123345554 66666677778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|+.+|+++||||||++||+.+++.+.+.|.++. + |+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999875 3 8999999999999865 89999999999999999887753
No 293
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-42 Score=368.11 Aligned_cols=224 Identities=33% Similarity=0.559 Sum_probs=192.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~l 816 (987)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.++.. .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 359999999999999999999999999999999999875 389999999999875 346
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||+|.+|.+|+++|+.++.. .. + ++.+.++++.+++.+++..+ ++ ..+..||+|||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~----~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---LD----KSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---Hh----CCcccCCHHHH
Confidence 678999999999999999999999986521 11 1 23456778888887665432 33 34557999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. +|+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998876 699999999999999999999
Q ss_pred hcCCCchHH
Q 001980 969 VSRPDGAYS 977 (987)
Q Consensus 969 l~~~~g~f~ 977 (987)
...+.+.|.
T Consensus 233 ~~~~~~~~~ 241 (250)
T PRK14266 233 FINPKDKRT 241 (250)
T ss_pred HhCCCChHH
Confidence 877666554
No 294
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-42 Score=379.94 Aligned_cols=228 Identities=25% Similarity=0.375 Sum_probs=187.8
Q ss_pred cEEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC----CCCceEEECCccCCCCCHHH
Q 001980 744 EIELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD----PTAGKVMIDGKDIRRLNLKS 818 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~----p~~G~I~idG~di~~i~l~~ 818 (987)
-|+++|++++|+.... .++|+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999964322 359999999999999999999999999999999999997 48999999999999998776
Q ss_pred Hhc----ccEEEccccc--ccc-ccHHHH----hccCCC---CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 819 LRL----KIGLVQQEPA--LFA-ASIFDN----IAYGKE---GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 819 lR~----~i~~VpQdp~--lF~-gTIreN----L~~~~~---~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
+|+ .|+||||+|. ++. -|+.+| +..... ....+.+.++++.+++.+.... .......|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchhC
Confidence 543 6999999995 332 355544 432211 1123456778888888653221 12344579
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEE
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVE 961 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive 961 (987)
|||||||++|||||+.+|++||+||||++||+.+...|.+.|+++.+ +.|+|+|||+++.+. .||||+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 789999999999985 589999999999999
Q ss_pred ecChhHHhcCCCchHHHH
Q 001980 962 QGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 962 ~Gt~~eLl~~~~g~f~~l 979 (987)
.|+++++++++...|.+.
T Consensus 235 ~g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQA 252 (326)
T ss_pred ECCHHHHhhCCCChHHHH
Confidence 999999998877677654
No 295
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4.9e-42 Score=368.83 Aligned_cols=221 Identities=32% Similarity=0.528 Sum_probs=181.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~ 176 (987)
++++|++++|+. +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2348999999999999999999999999999999999999999999999999876654 34577
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCCCCC--HHHH---HHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKPEAT--MAEV---EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
+++|++|++.+|+. |++||+.++..... .... ........+.+.++.+ |+.......+.+||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence 89999999998864 99999987632110 0000 0000011123344444 566666778889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
|||+.+|+++||||||++||+.+++.+.+.|.++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 99999999999999999999999999999999874 37999999999999865 8999999999999999988863
No 296
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-42 Score=367.44 Aligned_cols=214 Identities=29% Similarity=0.474 Sum_probs=181.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC------CCCHH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR------RLNLK 817 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~------~i~l~ 817 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .....
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999963 35999999999999999999999999999999999999999999999999873 12345
Q ss_pred HHhcccEEEccccccccc-cHHHHhccCC---CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 818 SLRLKIGLVQQEPALFAA-SIFDNIAYGK---EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~g-TIreNL~~~~---~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
.+|++++|+||++.+|.+ |++||+.++. .... .+++.+.++..++.++... ...+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADR-----------FPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHH
Confidence 678999999999999975 9999996421 1112 2234555566665544433 3357999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~e 967 (987)
||++||||++++|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 47999999999999865 89999999999999999999
Q ss_pred HhcC
Q 001980 968 LVSR 971 (987)
Q Consensus 968 Ll~~ 971 (987)
+.+.
T Consensus 228 ~~~~ 231 (242)
T PRK11124 228 FTQP 231 (242)
T ss_pred hcCc
Confidence 8654
No 297
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=5.7e-42 Score=368.77 Aligned_cols=216 Identities=32% Similarity=0.515 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEeCCCC--CHH
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-----AGHVLLDNVDIKTL--QLR 172 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~-----~G~i~~~g~~~~~~--~~~ 172 (987)
++++|++++|++. .+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECCe---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 7899999999742 4899999999999999999999999999999999999998 99999999998753 345
Q ss_pred HHhcceEEEcCCCCCchhcHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCCCc----ccccCCCCCCChHHHH
Q 001980 173 WLRDQIGLVNQEPALFATTILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYS----TQVGERGVQLSGGQKQ 245 (987)
Q Consensus 173 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~----t~~~~~g~~LSgGqkq 245 (987)
.+++.++|+||++.+|+.|++||+.++... ....+..+. ..+.++.+ |+. ......+.+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEI-----VEESLKKA--ALWDEVKDRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHH-----HHHHHHHc--CCCcchhhHhhCCcccCCHHHHH
Confidence 667889999999999989999999875321 111111111 12233333 443 4566778899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
|++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999998865 8999999999999999998876
Q ss_pred H
Q 001980 325 A 325 (987)
Q Consensus 325 ~ 325 (987)
.
T Consensus 232 ~ 232 (247)
T TIGR00972 232 T 232 (247)
T ss_pred h
Confidence 4
No 298
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.5e-42 Score=388.40 Aligned_cols=222 Identities=24% Similarity=0.419 Sum_probs=186.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999974 3589999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEcCCCCC-chhcHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPAL-FATTILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l-~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+||+|++.+ ++.|++||+.++.... ..... .......+.+.++.+ |+.........+||||||||++|||||++
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~-~~~~~~~v~~~le~v--gl~~~~~~~~~~LSgGerQRv~IArAL~~ 156 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTW-TETDRAAVERAMERT--GVAQFADRPVTSLSGGERQRVLLARALAQ 156 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCC-CHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999987 4669999999874211 00000 000001112223333 45445566778999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|++|||||||++||+.++..+++.|+++. .++|+|++||+++.+.. |||+++|++|++++.|++++++..
T Consensus 157 ~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 157 ATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 999999999999999999999999999886 48999999999999865 899999999999999999998754
No 299
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-42 Score=366.10 Aligned_cols=214 Identities=25% Similarity=0.396 Sum_probs=180.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH-Hhcc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~-lR~~ 822 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 35999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred cEEEccccccccc-cHHHHhccCCCCCCHHH----HHHHHHHc-CchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 823 IGLVQQEPALFAA-SIFDNIAYGKEGATEAE----VVEAARAA-NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 823 i~~VpQdp~lF~g-TIreNL~~~~~~~sd~e----i~~al~~a-~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
++|+||++.+|.+ |+++|+.++....+.++ +.++++.. ++.+ -.+ .....||||||||++|||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-------~~~----~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-------RRI----QRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-------HHh----CchhhCCHHHHHHHHHHH
Confidence 9999999999985 99999987532122222 22333322 1211 122 234579999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|++++|+||||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999999999875 4899999999999765 4899999999999999999999753
No 300
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.1e-42 Score=362.59 Aligned_cols=203 Identities=35% Similarity=0.595 Sum_probs=175.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999964 3599999999999999999999999999999999999999999999999999766543 57899
Q ss_pred EEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+|. .|+++|+.++.. ... ++++.++++..++.++.... ...||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRK-----------PKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCC-----------hhhCCHHHHHHHHHHHH
Confidence 9999999885 699999986421 112 23456667777776554433 24799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
++++|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999875 37899999999998876 8999999999999876
No 301
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=5.7e-42 Score=380.68 Aligned_cols=228 Identities=28% Similarity=0.463 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC---CceEEECCccCCCCCHHHH
Q 001980 744 EIELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT---AGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~---~G~I~idG~di~~i~l~~l 819 (987)
.++++|++++|+.+. ..++|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.|+.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996421 246999999999999999999999999999999999999996 9999999999999987765
Q ss_pred h----cccEEEccccc--ccc-ccHHHHhccC---CCCCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 001980 820 R----LKIGLVQQEPA--LFA-ASIFDNIAYG---KEGATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 885 (987)
Q Consensus 820 R----~~i~~VpQdp~--lF~-gTIreNL~~~---~~~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 885 (987)
| ++|+||||||. ++. .|+.+|+... ....+.+ .+.+.++.+++. ++.+ .+...+..||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~-------~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMP-------EARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-------ChHH-HhcCCcccCC
Confidence 3 47999999993 443 4777766421 1112322 344555555543 2221 2345567899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 001980 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQ 962 (987)
Q Consensus 886 gGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~ 962 (987)
||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 7899999999999874 899999999999999
Q ss_pred cChhHHhcCCCchHHHH
Q 001980 963 GSHSELVSRPDGAYSRL 979 (987)
Q Consensus 963 Gt~~eLl~~~~g~f~~l 979 (987)
|+++++++++...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999998877777764
No 302
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-42 Score=357.27 Aligned_cols=218 Identities=35% Similarity=0.521 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCC---------------------ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 001980 99 NIEFKNVTFSYPSRPD---------------------VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~---------------------~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G 157 (987)
.|+++|+++-|+.++. ...++|+||+|+.||+..|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4889999999974321 2358999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHHh----cceEEEcCCCCCchh-cHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHHhCCC
Q 001980 158 HVLLDNVDIKTLQLRWLR----DQIGLVNQEPALFAT-TILENILYGKPEA------TMAEVEAAASAANAHSFITLLPN 226 (987)
Q Consensus 158 ~i~~~g~~~~~~~~~~~~----~~i~~v~Q~~~l~~~-tv~eni~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 226 (987)
+|.++|.|+..++.+.+| +++++|+|+..|++- ||.||..||.+-. ..++..++++.+++..+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~------ 157 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGY------ 157 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhh------
Confidence 999999999999876543 479999999999976 9999999997522 12333444445544444
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-C
Q 001980 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-V 303 (987)
Q Consensus 227 g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~ 303 (987)
-...+.+||||+||||.|||||..+|+|||+|||+|||||--+..+++.|.++.+ +||+|+||||+++.-+ .
T Consensus 158 -----~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 158 -----ADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----hhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 4445569999999999999999999999999999999999999999999988753 8999999999998766 6
Q ss_pred CEEEEEeCCEEEEecChHHHHHhh
Q 001980 304 DTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 304 d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
|||.+|++|+|+..|+++|+..+.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCc
Confidence 999999999999999999998764
No 303
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=5.7e-42 Score=383.52 Aligned_cols=209 Identities=32% Similarity=0.484 Sum_probs=180.0
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCc----cCCCCCHHHH---h-cccEEEccccc
Q 001980 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK----DIRRLNLKSL---R-LKIGLVQQEPA 831 (987)
Q Consensus 760 ~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~----di~~i~l~~l---R-~~i~~VpQdp~ 831 (987)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|++||. |+...+.+.+ | ++|+||||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999995 7777766554 3 58999999999
Q ss_pred ccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 832 LFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 832 lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
+|. .|++||+.++.. ..+ .+...++++.+++.++....| .+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 799999987531 122 234567788888776644333 46999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHHHH
Q 001980 905 LLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 905 LlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l 979 (987)
||||||||+||+.+...+++.|.+..+ ++|+|+|||+++.+. .||+|++|++|++++.|++++++.++...|.+.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~ 263 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVAD 263 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHHH
Confidence 999999999999999999999998753 789999999999875 589999999999999999999998766555543
No 304
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-42 Score=385.25 Aligned_cols=217 Identities=32% Similarity=0.519 Sum_probs=185.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...++ .++.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999974 348999999999999999999999999999999999999999999999999987664 3568
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
||||+|++.+|+. ||+|||.|+... ....+..+ .+.+.++.+ |+.........+|||||||||+|||||+
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 9999999999976 999999987431 12222211 122334444 5555667778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|++||||||||+||+.+++.+.+.|+++. .+.|+|+|||+++++.. +|+|++|++|++++.|+++++..+
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999888774 37999999999998755 899999999999999999998765
No 305
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-42 Score=375.59 Aligned_cols=220 Identities=30% Similarity=0.521 Sum_probs=182.4
Q ss_pred cccEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC----C-
Q 001980 742 RGEIELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR----L- 814 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----i- 814 (987)
.+.|+++|++++|++++ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 36799999999996432 1359999999999999999999999999999999999999999999999999852 2
Q ss_pred CHHHHhcccEEEcccc--ccccccHHHHhccCCC--CCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 815 NLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 815 ~l~~lR~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
+...+|++++|+||+| .+|..|+++|+.++.. ....++ +.+.++..++ ++++ .......|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~---~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PEDY---VKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------ChhH---hcCChhhCCH
Confidence 4567889999999998 4778899999986432 123332 2334444443 2111 2234457999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEec
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~G 963 (987)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+. .||+|++|++|++++.|
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998753 789999999999875 48999999999999999
Q ss_pred ChhHHhcC
Q 001980 964 SHSELVSR 971 (987)
Q Consensus 964 t~~eLl~~ 971 (987)
++++++..
T Consensus 234 ~~~~~~~~ 241 (289)
T PRK13645 234 SPFEIFSN 241 (289)
T ss_pred CHHHHhcC
Confidence 99988654
No 306
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-42 Score=371.39 Aligned_cols=218 Identities=31% Similarity=0.523 Sum_probs=181.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 171 (987)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4899999999974 348999999999999999999999999999999999974 689999999999864 344
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C-CH----HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE--A-TM----AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~-~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
..++++++|++|++.+|+.|++||+.++... . .. +++.++++..++.+ .+.+..++.+.+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWD-------EVKDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCch-------hhhHHhhCCcccCCHHHH
Confidence 5677899999999999988999999875311 1 11 12222222222211 112345677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998768999999999999865 899999999999999999887
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 643
No 307
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-42 Score=364.29 Aligned_cols=205 Identities=38% Similarity=0.570 Sum_probs=176.0
Q ss_pred EEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 745 IELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
|+++|++++|++... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 478999999964111 469999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEcccccccc-ccHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~--~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+|+||+|.+|. .|+++|+.++.. .. .++++.++++..++.++....+ ..||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999987 699999976421 11 2345677777777766554433 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEe--CCEEEEecCh
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQ--DGRIVEQGSH 965 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~--~G~ive~Gt~ 965 (987)
||+++|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999874 37899999999998755 89999999 7999998764
No 308
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.1e-41 Score=356.47 Aligned_cols=202 Identities=34% Similarity=0.578 Sum_probs=177.6
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
+.++++|++++|+.. ..++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++++
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 459999999999743 2358999999999999999999999999999999999999999999999999987777778889
Q ss_pred eEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 178 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 178 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|+|++|+|.+|++|++||+.+... ...+++.++ +. +++++..|||||+||++|||||+.+|
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~---------l~---------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGA---------LR---------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-CCHHHHHHH---------hh---------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999976532 222222221 11 34567899999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecC
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 319 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 319 (987)
+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999999998877899999999999987799999999999998775
No 309
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=373.79 Aligned_cols=217 Identities=29% Similarity=0.533 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC----CHH
Q 001980 744 EIELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL----NLK 817 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~l~ 817 (987)
.|+++|++++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 13699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcccEEEcccc--ccccccHHHHhccCCC--CCCHH----HHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhH
Q 001980 818 SLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 818 ~lR~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd~----ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
..|+.++|+||+| .+|..|++|||.++.. ..+.+ .+.++++..++. ++. ......|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-----------SKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------hCCcccCCHHH
Confidence 6788999999998 5788899999975421 22222 345555666553 222 23345799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChh
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~ 966 (987)
|||++|||||+++|++|||||||++||+.+...+.+.|+++. ++.|||++||+++.+. -||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 4789999999999885 58999999999999999999
Q ss_pred HHhcC
Q 001980 967 ELVSR 971 (987)
Q Consensus 967 eLl~~ 971 (987)
++++.
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 98754
No 310
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-42 Score=387.20 Aligned_cols=216 Identities=30% Similarity=0.488 Sum_probs=183.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 3899999999974 3489999999999999999999999999999999999999999999999999776553 4679
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+|++|++.+|+. ||+||+.++... ....+..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999976 999999986431 11111111 122334444 56656677778999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998753 8999999999998765 899999999999999999998654
No 311
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-42 Score=373.90 Aligned_cols=227 Identities=34% Similarity=0.516 Sum_probs=190.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCCC--C
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRRL--N 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~i--~ 815 (987)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999963 359999999999999999999999999999999999865 4999999999998653 3
Q ss_pred HHHHhcccEEEccccccccccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
...+|++++|+||+|.+|.+|++|||.++.. .. + ++.+.++++..++.+.+. +.++ .....|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~----~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRLD----KNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHhh----CChhhCCHHH
Confidence 3467899999999999999999999986421 11 1 234556677776654322 1223 3445799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhH
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~e 967 (987)
|||++|||||+++|++|||||||++||+++...+.+.|+++.+++|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999999865 89999999999999999999
Q ss_pred HhcCCCchHHHH
Q 001980 968 LVSRPDGAYSRL 979 (987)
Q Consensus 968 Ll~~~~g~f~~l 979 (987)
+.+++...|.+.
T Consensus 268 ~~~~~~~~~~~~ 279 (286)
T PRK14275 268 LFTNPKDRMTED 279 (286)
T ss_pred HHhCCCcHHHHH
Confidence 987655445443
No 312
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.6e-42 Score=367.65 Aligned_cols=211 Identities=28% Similarity=0.464 Sum_probs=178.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH-Hhccc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~-lR~~i 823 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999963 36999999999999999999999999999999999999999999999999998877654 46789
Q ss_pred EEEccccccccc-cHHHHhccCCCCC--CHHH-HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKEGA--TEAE-VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~~~--sd~e-i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
+|+||++.+|.. |+++|+.++.... .+++ ..++++..+ +++.........||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 9999998653221 1222 233333332 1122223344579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
++|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999998763 7899999999999986 899999999999999999998
No 313
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-42 Score=369.47 Aligned_cols=221 Identities=26% Similarity=0.481 Sum_probs=191.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++..++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 36999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEccccccccc-cHHHHhccCCC----------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE----------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~----------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
|+||++.+|.+ |+++|+.++.. ...++++.++++..++.++... ....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHH
Confidence 99999998876 99999987521 1123456677777777654332 23579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||||++++|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 9999999999999999999999999999999999875 47899999999999865 899999999999999999998753
Q ss_pred CCchHHHHHH
Q 001980 972 PDGAYSRLLQ 981 (987)
Q Consensus 972 ~~g~f~~l~~ 981 (987)
..+.+.+.
T Consensus 229 --~~~~~~~~ 236 (255)
T PRK11231 229 --GLLRTVFD 236 (255)
T ss_pred --HHHHHHhC
Confidence 34555553
No 314
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-42 Score=367.05 Aligned_cols=204 Identities=32% Similarity=0.481 Sum_probs=179.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 4999999999963 35999999999999999999999999999999999999999999999998763 567899
Q ss_pred EEEcccccccc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
+|+||++.+|. .|++||+.++.....++++.++++..++.++... ...+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 6999999875432235667788888877654432 33579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 001980 903 AILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~ 966 (987)
++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998864 37899999999998754 8999999999999988764
No 315
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=369.92 Aligned_cols=221 Identities=29% Similarity=0.484 Sum_probs=188.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCCCC-HH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRLN-LK 817 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i~-l~ 817 (987)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999963 3699999999999999999999999999999999999986 6999999999998763 45
Q ss_pred HHhcccEEEccccccccccHHHHhccCCC---CCCHHHH----HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 818 SLRLKIGLVQQEPALFAASIFDNIAYGKE---GATEAEV----VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~gTIreNL~~~~~---~~sd~ei----~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
.+|++++|+||+|.+|..|+++|+.++.. ..++++. .+.++..++.+.. ++.......+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHH
Confidence 67899999999999999999999986531 1344443 3344555554322 22334556689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999999865 8999999999999999999998
Q ss_pred cCCCc
Q 001980 970 SRPDG 974 (987)
Q Consensus 970 ~~~~g 974 (987)
+.+..
T Consensus 251 ~~~~~ 255 (276)
T PRK14271 251 SSPKH 255 (276)
T ss_pred hCcCc
Confidence 76433
No 316
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.2e-42 Score=361.08 Aligned_cols=201 Identities=40% Similarity=0.687 Sum_probs=173.4
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEE
Q 001980 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 825 (987)
Q Consensus 746 ~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~ 825 (987)
+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999642 2469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred Ecccc--ccccccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 826 VQQEP--ALFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 826 VpQdp--~lF~gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
+||++ .++..|+++|+.++.. ..+ ++++.+.++..++.++..+ ....||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99998 3678899999976421 112 2345566676666554432 235799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCE
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGR 958 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ 958 (987)
|+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999875 47899999999999987 89999999985
No 317
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-42 Score=368.02 Aligned_cols=217 Identities=33% Similarity=0.547 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999742 34899999999999999999999999999999999999999999999999998877777788999
Q ss_pred EEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcc--cccCCCCCCChHHHHHHHHHHHhc
Q 001980 180 LVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYST--QVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 180 ~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t--~~~~~g~~LSgGqkqRialARal~ 254 (987)
|++|++.+|+ .|++||+.++... ....+. ...+.+.++.+ |+.. ...+.+.+||||||||++|||||+
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999986 5999999875321 111111 11223444544 5553 567778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
++|+++||||||++||+.+++.+.+.|.++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999885 38999999999998765 89999999999999999888754
No 318
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-42 Score=365.40 Aligned_cols=212 Identities=38% Similarity=0.607 Sum_probs=186.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|++||+++.+.+. .|+.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 479999999963 359999999999999999999999999999999999999999999999999987664 368899
Q ss_pred EEccccccccc-cHHHHhccCCC------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+|.+ |+++|+.++.. ...++++.++++..++.++....| .+||+|||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 99999975421 112446677778888876665444 4799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 9999999999999999999999999999998753 7999999999999865 7999999999999999999998653
No 319
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=369.15 Aligned_cols=225 Identities=31% Similarity=0.535 Sum_probs=191.8
Q ss_pred CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCC--
Q 001980 740 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIR-- 812 (987)
Q Consensus 740 ~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~-- 812 (987)
+..+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred CCCceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 34567999999999963 3599999999999999999999999999999999999875 7999999998874
Q ss_pred --CCCHHHHhcccEEEccccccccccHHHHhccCCC--C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 001980 813 --RLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883 (987)
Q Consensus 813 --~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 883 (987)
......+|++++|+||++.+|.+|+++|+.++.. . ..++++.++++.+++.+.+. .........
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 161 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFN 161 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCccc
Confidence 3445678899999999999999999999986421 1 12456677777777654332 223344568
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQ 962 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~ 962 (987)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999998777899999999999865 899999999999999
Q ss_pred cChhHHhcCCCc
Q 001980 963 GSHSELVSRPDG 974 (987)
Q Consensus 963 Gt~~eLl~~~~g 974 (987)
|+++++..++..
T Consensus 242 g~~~~~~~~~~~ 253 (265)
T PRK14252 242 GATDTIFIKPKN 253 (265)
T ss_pred CCHHHHHhCCCC
Confidence 999999765433
No 320
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=9.4e-42 Score=364.44 Aligned_cols=216 Identities=28% Similarity=0.487 Sum_probs=184.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999973 35899999999999999999999999999999999999999999999999987766544 35899
Q ss_pred EEcCCCCCc-hhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALF-ATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~-~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.++ ..|++||+.++... ....+.. ..+.+.++.+ |+.......+.+||||||||++|||||+++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999885 56999999875321 1111111 1123445554 677677888889999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+++||||||++||+.+++.+.+.|.++. +++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999885 48999999999999888999999999999999999888654
No 321
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.4e-42 Score=363.39 Aligned_cols=215 Identities=25% Similarity=0.466 Sum_probs=178.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 4789999999742 145899999999999999999999999999999999999999999999999986543 55677899
Q ss_pred EEcCCCCCch-hcHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFA-TTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~-~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.+++ .|++||+.+... ....++..+ .+.+.++.+ |+.........+||||||||++|||||+.+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 9999999885 599999987421 111111111 112333333 444445566779999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999998777999999999999865 899999999999999988764
No 322
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5e-41 Score=364.42 Aligned_cols=237 Identities=25% Similarity=0.412 Sum_probs=198.8
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 001980 71 YKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 71 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g 150 (987)
+.+.+.+..+++... ....+.....|+++|+++.. .++|+|+||+|++||+++|+|+||||||||+++|+|
T Consensus 15 ~~~~~~~~~~~~~~~----~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~G 85 (282)
T cd03291 15 EGFGELLEKAKQENN----DRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred HHHHHHHhccccccc----ccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356666666543221 12223344569999999962 248999999999999999999999999999999999
Q ss_pred CCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcc
Q 001980 151 FYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYST 230 (987)
Q Consensus 151 ~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 230 (987)
+++|++|+|.++| .|+|++|++++++.|++||+.++... ...++...++..++.+.+..+|.+.++
T Consensus 86 l~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 86 ELEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVSY-DEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccccc-CHHHHHHHHHHhCCHHHHHhccccccc
Confidence 9999999999998 59999999999999999999986432 223445556666777888889999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHH-HhhhCCCeEEEEcCCCCccccCCEEEEE
Q 001980 231 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL-DRLMVGRTTVVVAHRLSTIRNVDTVAVI 309 (987)
Q Consensus 231 ~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~vtH~~~~~~~~d~i~~l 309 (987)
.+++.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.+ ..+.+++|+|++||+++.+..||++++|
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l 231 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 231 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999888754 5555689999999999998889999999
Q ss_pred eCCEEEEecChHHHHHhhhhH
Q 001980 310 QQGQVVETGTHEELIAKAGAY 330 (987)
Q Consensus 310 ~~G~i~~~g~~~~l~~~~~~~ 330 (987)
++|++++.|+++++.+....+
T Consensus 232 ~~G~i~~~g~~~~~~~~~~~~ 252 (282)
T cd03291 232 HEGSSYFYGTFSELQSLRPDF 252 (282)
T ss_pred ECCEEEEECCHHHHHhcchHH
Confidence 999999999999987644333
No 323
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=373.37 Aligned_cols=217 Identities=32% Similarity=0.544 Sum_probs=182.8
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC----CHHH
Q 001980 745 IELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL----NLKS 818 (987)
Q Consensus 745 I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~l~~ 818 (987)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996431 13699999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcccEEEcccc--ccccccHHHHhccCCC--CCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 819 LRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 819 lR~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
+|++|+|+||+| .+|+.|+++|+.++.. ..+.++ +.++++..++.+. ........|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 889999999998 6888999999976421 123333 3344555555321 122334579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999875 47899999999998865 899999999999999999998
Q ss_pred hcC
Q 001980 969 VSR 971 (987)
Q Consensus 969 l~~ 971 (987)
++.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 764
No 324
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4.7e-42 Score=361.57 Aligned_cols=201 Identities=37% Similarity=0.598 Sum_probs=175.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH---HHhc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLRL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~---~lR~ 821 (987)
|+++|++++|++ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 23699999999999999999999999999999999999999999999999999887643 4688
Q ss_pred ccEEEcccccccc-ccHHHHhccCCC------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 822 KIGLVQQEPALFA-ASIFDNIAYGKE------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 822 ~i~~VpQdp~lF~-gTIreNL~~~~~------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
.++|+||+|.+|. .|+++|+.++.. ...+++++++++..++.+.....| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999985 699999976421 112456778888888776554433 4699999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCE
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGR 958 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ 958 (987)
||||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999875 48999999999999886 79999999985
No 325
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=5.4e-42 Score=361.18 Aligned_cols=202 Identities=33% Similarity=0.531 Sum_probs=174.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH---HHHhc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL---KSLRL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l---~~lR~ 821 (987)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 359999999999999999999999999999999999999999999999999987754 34788
Q ss_pred ccEEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 822 KIGLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 822 ~i~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
.++|+||++.+|. .|+++|+.++.. ..+ ++++.++++..++.+..... ..+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHH
Confidence 9999999999987 599999986421 112 33566777777776554433 24799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEE
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRI 959 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~i 959 (987)
||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 57999999999999976 799999999974
No 326
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-42 Score=372.14 Aligned_cols=213 Identities=30% Similarity=0.483 Sum_probs=182.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC--CCCHHHHhcc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSLRLK 822 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~l~~lR~~ 822 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999963 35999999999999999999999999999999999999999999999999985 3445678899
Q ss_pred cEEEccccc--cccccHHHHhccCC--CCCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 823 IGLVQQEPA--LFAASIFDNIAYGK--EGATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 823 i~~VpQdp~--lF~gTIreNL~~~~--~~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
++|+||+|. +|..|+.+|+.++. ...+. +++.++++..++.++. +++ ...||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-------HQP----IQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-------cCC----chhCCHHHHHHHHH
Confidence 999999985 57789999997641 11222 3345667777765543 222 34799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||||+.+|+||||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 47899999999999855 899999999999999999998764
No 327
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.2e-42 Score=363.96 Aligned_cols=208 Identities=35% Similarity=0.506 Sum_probs=174.3
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH----HH
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR----WL 174 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~----~~ 174 (987)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997421 13589999999999999999999999999999999999999999999999998776542 24
Q ss_pred hcceEEEcCCCCCchh-cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 175 RDQIGLVNQEPALFAT-TILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 175 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
+++++|++|++.+|+. |++||+.++.... ...... ..+.+.++.+ |++......+.+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR-----ERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHH-----HHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5689999999999876 9999998864211 111111 1223445554 6666667778899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEE
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQV 314 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i 314 (987)
||+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998854 8999999999998887899999999974
No 328
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-42 Score=363.69 Aligned_cols=214 Identities=29% Similarity=0.470 Sum_probs=180.0
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---H
Q 001980 99 NIEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW---L 174 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 174 (987)
.++++|++|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 146899999999999999999999999999999999999999999999999998876543 3
Q ss_pred h-cceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 175 R-DQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 175 ~-~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
+ +.++|++|++.+|+. |++||+.++.. .....+..+ .+.+.++.+ |+.....+...+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 579999999998876 99999987421 111111111 122334444 666667778889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEeCCEEEEecC
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 319 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 319 (987)
|||+.+|+++||||||++||+.+++.+.+.|.++. +|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999874 4899999999999998889999999999998775
No 329
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=366.83 Aligned_cols=225 Identities=31% Similarity=0.484 Sum_probs=192.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCCC--CH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRL--NL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~l 816 (987)
.+.+++.+++|.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... ..
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 3889999999953 3699999999999999999999999999999999999986 799999999998643 44
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC-----CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE-----GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~-----~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
..+|++++|+||++.+|..|++|||.++.. ...++++.++++.+++.+.+... ..+...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCcccCCHHHHHH
Confidence 567889999999999999999999986531 11235677888888876554322 234566899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEe--------CCEEEEe
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQ--------DGRIVEQ 962 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~--------~G~ive~ 962 (987)
++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998778899999999998865 89999996 8999999
Q ss_pred cChhHHhcCCCchHHH
Q 001980 963 GSHSELVSRPDGAYSR 978 (987)
Q Consensus 963 Gt~~eLl~~~~g~f~~ 978 (987)
|+++++++++...+.+
T Consensus 238 g~~~~~~~~~~~~~~~ 253 (261)
T PRK14263 238 GPTAQIFQNPREQLTS 253 (261)
T ss_pred CCHHHHHhCCCcHHHH
Confidence 9999998765434443
No 330
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=5.7e-42 Score=365.62 Aligned_cols=216 Identities=29% Similarity=0.447 Sum_probs=183.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-Hhcce
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i 178 (987)
++++|++++|++ ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999974 34899999999999999999999999999999999999999999999999988776544 35679
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+|++|++.+|+. |++||+.++.+. ....+.. ..+.+.++.+ |+.........+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999887 999999875321 1111111 1123445544 66666778888999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 48999999999987765 89999999999999999888754
No 331
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=368.65 Aligned_cols=223 Identities=28% Similarity=0.505 Sum_probs=190.6
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-----CceEEECCccCCC--CC
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-----AGKVMIDGKDIRR--LN 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--i~ 815 (987)
+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999953 25899999999999999999999999999999999999985 8999999999853 45
Q ss_pred HHHHhcccEEEccccccccccHHHHhccCC------CCCC-HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGK------EGAT-EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~gTIreNL~~~~------~~~s-d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
...+|+.++|+||++.+|..|++||+.++. +... ++.+.++++..++.+++..+ ....+..|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-------IHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHH
Confidence 567889999999999999999999997542 1111 23466777888876655422 234456799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeC-----CEEE
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQD-----GRIV 960 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~-----G~iv 960 (987)
|||++|||||+++|++|||||||++||+++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999999853 48999999999999865 799999999 9999
Q ss_pred EecChhHHhcCCCch
Q 001980 961 EQGSHSELVSRPDGA 975 (987)
Q Consensus 961 e~Gt~~eLl~~~~g~ 975 (987)
+.|+++++..++...
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (261)
T PRK14258 236 EFGLTKKIFNSPHDS 250 (261)
T ss_pred EeCCHHHHHhCCCCH
Confidence 999999998765543
No 332
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.5e-41 Score=362.75 Aligned_cols=212 Identities=37% Similarity=0.548 Sum_probs=184.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999963 359999999999999999999999999999999999999999999999999987653 478899
Q ss_pred EEccccccccc-cHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~--~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||+|.+|.+ |+++|+.+... .. .++++.++++..++.++.... ..+||+||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999975 99999976432 11 134556677777775554432 34799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|+++|+++||||||++||+++...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.+
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~ 222 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCC
Confidence 9999999999999999999999999999998654 7999999999999866 8999999999999999999998653
No 333
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=368.65 Aligned_cols=219 Identities=33% Similarity=0.524 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~l 816 (987)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999974 69999999999853 455
Q ss_pred HHHhcccEEEcccccccc-ccHHHHhccCCC---CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 817 KSLRLKIGLVQQEPALFA-ASIFDNIAYGKE---GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~-gTIreNL~~~~~---~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
..+|+.++|+||++.+|. .|+++|+.++.. ..+ ++.+.++++..++.+.+.. .......+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-------RLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHH
Confidence 678899999999999987 599999975421 111 2345667777777543321 1233445799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEe------CCEEEE
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQ------DGRIVE 961 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~-~~D~Iivl~------~G~ive 961 (987)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999998877789999999999986 489999997 899999
Q ss_pred ecChhHHhcCC
Q 001980 962 QGSHSELVSRP 972 (987)
Q Consensus 962 ~Gt~~eLl~~~ 972 (987)
.|++++++..+
T Consensus 234 ~~~~~~~~~~~ 244 (258)
T PRK14241 234 IDDTEKIFSNP 244 (258)
T ss_pred cCCHHHHHhCc
Confidence 99999998654
No 334
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-42 Score=369.20 Aligned_cols=218 Identities=29% Similarity=0.446 Sum_probs=181.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 171 (987)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999974 3489999999999999999999999999999999999997 48999999998853 234
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCCC---CH----HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TM----AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
..++++|+|++|++.+|+.|++|||.++.... .. +++.++++..++.+ ++.......+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWN-------EVKDKLNTNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCch-------hhHHHHhCCcccCCHHHH
Confidence 56778899999999999889999998863211 11 12222222222211 112234556789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 899999999999999999988
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
.++
T Consensus 237 ~~~ 239 (254)
T PRK14273 237 FFN 239 (254)
T ss_pred HhC
Confidence 653
No 335
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=365.89 Aligned_cols=221 Identities=34% Similarity=0.575 Sum_probs=188.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCC-CCCHH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIR-RLNLK 817 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~-~i~l~ 817 (987)
.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 3599999999999999999999999999999999999986 5999999999986 45667
Q ss_pred HHhcccEEEccccccccccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 818 SLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
.+|+.++|+||++.+|..|+++|+.++.. .. . ++++.++++.+++.+.+. .........|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 88999999999999999999999986521 11 1 234455666777654432 1223344579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999876 8999999999999999999987
Q ss_pred cCCCc
Q 001980 970 SRPDG 974 (987)
Q Consensus 970 ~~~~g 974 (987)
.++..
T Consensus 233 ~~~~~ 237 (249)
T PRK14253 233 SNPKD 237 (249)
T ss_pred cCCCC
Confidence 65443
No 336
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=367.97 Aligned_cols=225 Identities=33% Similarity=0.561 Sum_probs=187.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-----CceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-----AGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--i~l 816 (987)
-++++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 36999999999999999999999999999999999999874 8999999999875 345
Q ss_pred HHHhcccEEEcccccccc-ccHHHHhccCCC--CC-CHHHH----HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 817 KSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GA-TEAEV----VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~-gTIreNL~~~~~--~~-sd~ei----~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
..+|+.++|+||++.+|. .|+++|+.++.. .. .+++. .+.++..++++.+ ++.++++ ..+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTP----ATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCC----cccCCHHH
Confidence 577899999999999988 599999975421 11 23332 2334444444332 2334444 45799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhH
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~e 967 (987)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999886 89999999999999999999
Q ss_pred HhcCCCchHHH
Q 001980 968 LVSRPDGAYSR 978 (987)
Q Consensus 968 Ll~~~~g~f~~ 978 (987)
++.++...|.+
T Consensus 234 ~~~~~~~~~~~ 244 (252)
T PRK14272 234 LFTNPRDERTE 244 (252)
T ss_pred HHhCcCcHHHH
Confidence 98776555543
No 337
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-42 Score=361.46 Aligned_cols=213 Identities=27% Similarity=0.443 Sum_probs=176.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 478999999974 3589999999999999999999999999999999999999999999999988653 345677899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.+++. |++||+.++... ....+..+ .+.+.++.+ |+.........+||||||||++||||++.+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RIDELLDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998876 999999874211 11111111 112333433 444445566679999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
|+++||||||++||+.+++.+.+.|.++. + ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999875 3 7899999999999875 899999999999999887654
No 338
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-42 Score=369.39 Aligned_cols=220 Identities=32% Similarity=0.520 Sum_probs=183.6
Q ss_pred CccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--C
Q 001980 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--L 169 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~ 169 (987)
.+.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 346999999999974 358999999999999999999999999999999999986 589999999999853 3
Q ss_pred CHHHHhcceEEEcCCCCCchhcHHHHHhcCCCC---CCHH----HHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChH
Q 001980 170 QLRWLRDQIGLVNQEPALFATTILENILYGKPE---ATMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG 242 (987)
Q Consensus 170 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgG 242 (987)
+...++++|+|++|++.+|+.|++||+.++... .+.+ ++.++++..++ ..++....++...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAAL-------WNEVKDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCC-------ChhhHHHHhcCCCCCCHH
Confidence 455678899999999999989999999875321 1222 12222222221 112234566778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChH
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 321 (987)
||||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988768899999999998865 8999999999999999998
Q ss_pred HHHHh
Q 001980 322 ELIAK 326 (987)
Q Consensus 322 ~l~~~ 326 (987)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 87653
No 339
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4.7e-42 Score=361.10 Aligned_cols=198 Identities=31% Similarity=0.508 Sum_probs=170.6
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEE
Q 001980 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 825 (987)
Q Consensus 746 ~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~ 825 (987)
+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 35999999999999999999999999999999999999999999999998874 46889999
Q ss_pred Ecccccc---ccccHHHHhccCCCC----------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 826 VQQEPAL---FAASIFDNIAYGKEG----------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 826 VpQdp~l---F~gTIreNL~~~~~~----------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+||++.+ |..|++||+.++... ..++++.++++..++.++.... ..+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHH
Confidence 9999986 668999999865321 1234567788888876654432 246999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
+|||||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999875 67899999999999866 7999999986 56654
No 340
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.7e-41 Score=368.49 Aligned_cols=229 Identities=26% Similarity=0.445 Sum_probs=190.4
Q ss_pred cEEEEeEEEECCCCC------CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH
Q 001980 744 EIELRHVDFAYPSRP------DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 817 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~------~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~ 817 (987)
.|+++||+++|+... ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 489999999995311 23699999999999999999999999999999999999999999999999999766666
Q ss_pred HHhcccEEEccccc--ccc-ccHHHHhccCC---CC----CCHHHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCCh
Q 001980 818 SLRLKIGLVQQEPA--LFA-ASIFDNIAYGK---EG----ATEAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 818 ~lR~~i~~VpQdp~--lF~-gTIreNL~~~~---~~----~sd~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSg 886 (987)
..|++++|+||+|. ++. -|+.+|+.++. .. ..++++.++++.+++. +... .. ..+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-------YY----PHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-------cC----chhcCH
Confidence 66788999999985 443 38888886421 11 1234567788888874 3322 22 246999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
|||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999875 37899999999999986 8999999999999999
Q ss_pred ChhHHhcCCC-chHHHHHHhh
Q 001980 964 SHSELVSRPD-GAYSRLLQLQ 983 (987)
Q Consensus 964 t~~eLl~~~~-g~f~~l~~~q 983 (987)
+++++.+.+. ..+++++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 9999987643 4466677543
No 341
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-41 Score=365.76 Aligned_cols=213 Identities=27% Similarity=0.459 Sum_probs=186.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 35999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcccccc-ccccHHHHhccCCCCC------CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPAL-FAASIFDNIAYGKEGA------TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~l-F~gTIreNL~~~~~~~------sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+ +..|++||+.++.... .++.+.++++..++.++... ....||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99999987 6789999998653211 13456677777777654332 234799999999999999
Q ss_pred Hc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHH
Q 001980 898 VL------KNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 898 ll------r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eL 968 (987)
|+ ++|++|||||||++||+.+...+.+.|++.. +++|||++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 4789999999999886 5899999999999999999998
Q ss_pred hcC
Q 001980 969 VSR 971 (987)
Q Consensus 969 l~~ 971 (987)
...
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 753
No 342
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-41 Score=370.41 Aligned_cols=214 Identities=34% Similarity=0.600 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC--CCHHHHhcc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR--LNLKSLRLK 822 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~--i~l~~lR~~ 822 (987)
|+++||+++|++ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999963 2359999999999999999999999999999999999999999999999999853 334568899
Q ss_pred cEEEcccc--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 823 IGLVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 823 i~~VpQdp--~lF~gTIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
|+|+||+| .+|..|++||+.++.. ..+. +.+.++++..++.++.. .. ...||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-------~~----~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-------KP----PHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-------CC----hhhCCHHHHHHHHH
Confidence 99999998 4788999999976421 1222 34566777777654432 22 34699999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||||+++|++|||||||++||+.+...+.+.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 47899999999999874 899999999999999999998764
No 343
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.9e-42 Score=359.33 Aligned_cols=199 Identities=32% Similarity=0.518 Sum_probs=167.8
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 001980 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 180 (987)
+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 367999999741 358999999999999999999999999999999999999999999999998753 345678999
Q ss_pred EcCCC--CCchhcHHHHHhcCCCCCC--HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 181 VNQEP--ALFATTILENILYGKPEAT--MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 181 v~Q~~--~l~~~tv~eni~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
++|+| .+++.|++||+.++.+... .+++.++ ++.+ |+.........+||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETV---------LKDL--DLYALKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHH---------HHHc--CCchhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 99998 4567899999988643221 1223333 3333 444445566679999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEE
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVV 315 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~ 315 (987)
|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999884 58999999999999875 8999999999874
No 344
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=372.39 Aligned_cols=219 Identities=27% Similarity=0.491 Sum_probs=184.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC--CCCHHHHhc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK--TLQLRWLRD 176 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~~ 176 (987)
.|+++|++|+|++ ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+++
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 235899999999999999999999999999999999999999999999999984 234556788
Q ss_pred ceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 177 QIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 177 ~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
.++|++|+| .+++.|++||+.++... ...++..+. +.+.++.+ |+.......+.+||||||||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 56788999999875321 122221111 12223333 55555677788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHHh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+.+|++|||||||++||+.++..+.+.|.++.+ |+|+|++||+++.+. .|||+++|++|++++.|+++++.+.
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999998853 899999999999987 5999999999999999999988654
No 345
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=7e-42 Score=361.33 Aligned_cols=211 Identities=27% Similarity=0.442 Sum_probs=176.8
Q ss_pred EEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 100 IEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~~-~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
++++|++++|++... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...++++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999975311 258999999999999999999999999999999999999999999999999875 345667889
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+|++|++.+|+. |++||+.+.... ....+..+ .+.+.++.+ |++......+.+||||||||++|||||+.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999999886 999999764221 11111111 112334444 66666677888999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
+|+++||||||++||+.+++.+.+.|.++. +++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999885 48999999999998765 8999999999998754
No 346
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-41 Score=369.28 Aligned_cols=221 Identities=27% Similarity=0.443 Sum_probs=185.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|++....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334589999999999999999999999999999999999999999999999999877777778899
Q ss_pred EEEcCCCC--CchhcHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 GLVNQEPA--LFATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~~v~Q~~~--l~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|++|+|. ++..|+.|||.++.. ....++..+.+ .+.++.+ |+..........||||||||++|||||+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV-----DEALLAV--NMLDFKTREPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 557799999987532 11222221111 1122222 4433445567799999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|+++||||||++||+.+++.+.+.|.++.+ |.|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998853 8999999999999888999999999999999999988754
No 347
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=365.27 Aligned_cols=227 Identities=30% Similarity=0.496 Sum_probs=191.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC------CccCCCCCHH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID------GKDIRRLNLK 817 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id------G~di~~i~l~ 817 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++ |.++.+++..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5999999999963 358999999999999999999999999999999999999998666655 5777777888
Q ss_pred HHhcccEEEccccccccc-cHHHHhccCCC--CC-CHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 818 SLRLKIGLVQQEPALFAA-SIFDNIAYGKE--GA-TEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~g-TIreNL~~~~~--~~-sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
.+|++++|+||+|.+|.+ |+++|+.++.. .. .++ .+.++++..++.+++.. .....+..||+|||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCcccCCHHHH
Confidence 889999999999999975 99999986421 11 222 34566677777544311 12334567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++||||++++|++|||||||++||..+...+.+.|++..+++|+|+|||+++.+. .||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999995 5899999999999999999999
Q ss_pred hcCCCchHHHHH
Q 001980 969 VSRPDGAYSRLL 980 (987)
Q Consensus 969 l~~~~g~f~~l~ 980 (987)
.+.+...|.+.+
T Consensus 240 ~~~~~~~~~~~~ 251 (257)
T PRK14246 240 FTSPKNELTEKY 251 (257)
T ss_pred HhCCCcHHHHHH
Confidence 887665566554
No 348
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2e-41 Score=357.57 Aligned_cols=210 Identities=32% Similarity=0.477 Sum_probs=187.0
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH----HHHhc
Q 001980 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL----KSLRL 821 (987)
Q Consensus 746 ~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l----~~lR~ 821 (987)
.+.|++|+|+.+ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567899999743 469999999999999999999999999999999999999999999999999876542 34577
Q ss_pred ccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 822 KIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 822 ~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
.++|+||+|.+|+.|+++|+.++.+ ..+++..++++..++.+++..+|.|+++.++....+||||||||++||||++++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999987643 456677888899999998998999999999888899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH--HHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCE
Q 001980 902 PAILLLDEATSALDAESECVLQE--ALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGR 958 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~--~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl~~G~ 958 (987)
|++|||||||++||+.+...+.+ .++... .+.|+|++||+++.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887 444443 3689999999999999999999999884
No 349
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.3e-41 Score=375.99 Aligned_cols=213 Identities=29% Similarity=0.480 Sum_probs=181.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999998764 35678999
Q ss_pred EEEcccccccc-ccHHHHhccCC--CCCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGK--EGATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~--~~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+|+||++.+|. .|+++|+.+.. ...+..+ +.++++..++. +.+++.+ ..||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-------~~~~~~~----~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-------SKADVRV----ALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-------hHhcCch----hhCCHHHHHHHHHHH
Confidence 99999999885 69999997421 1123332 33444444443 3344444 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||+++|++|||||||++||+.+...+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999875 57899999999999865 899999999999999999999754
No 350
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-42 Score=359.42 Aligned_cols=207 Identities=26% Similarity=0.444 Sum_probs=172.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++|+|++ .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..++++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 478999999964 35899999999999 99999999999999999999999999999999999887665 56778899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.+|.. |++||+.+... ....++..+. +.+.++.+ |+.........+||||||||++|||||+++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 148 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKAR-----VDEVLELV--NLGDRAKKKIGSLSGGMRRRVGIAQALVGD 148 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHC--CCHHHHhCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 99999986421 1111111111 11222322 333334456678999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 149 PSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999998767999999999999865 8999999999998764
No 351
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.1e-41 Score=379.16 Aligned_cols=218 Identities=28% Similarity=0.470 Sum_probs=182.7
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...++.
T Consensus 40 ~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ 115 (340)
T PRK13536 40 VAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARAR 115 (340)
T ss_pred eeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhcc
Confidence 35999999999974 34999999999999999999999999999999999999999999999999987654 456788
Q ss_pred eEEEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 178 IGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 178 i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
|||+||++.++. .|++||+.+.... ....+..+.+ .+.++.+ |+.........+||||||||++|||||+
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~ 188 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADARVSDLSGGMKRRLTLARALI 188 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence 999999999875 4999999853211 1112222111 1223322 4444456666789999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|+++||||||++||+.+++.+++.|+++. .|+|||++||+++.+.. ||+|++|++|+++..|+.+++.+.
T Consensus 189 ~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 189 NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999885 48999999999999976 899999999999999999998653
No 352
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=367.77 Aligned_cols=214 Identities=29% Similarity=0.461 Sum_probs=188.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++++
T Consensus 7 ~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 6999999999963 3599999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEcccccccc-ccHHHHhccCC-CC---------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGK-EG---------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~-~~---------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+|+||++.+|. .|+++|+.++. +. ..++.++++++..++.++..+ ....||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence 99999998875 69999997642 10 123456778888887655332 3357999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+||||++++|++|||||||++||+.+...+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999998765 8999999999999999999987
Q ss_pred cC
Q 001980 970 SR 971 (987)
Q Consensus 970 ~~ 971 (987)
..
T Consensus 233 ~~ 234 (265)
T PRK10253 233 TA 234 (265)
T ss_pred hH
Confidence 53
No 353
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.1e-41 Score=360.52 Aligned_cols=209 Identities=30% Similarity=0.514 Sum_probs=174.8
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---Hh
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW---LR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 175 (987)
++++|++++|++.. ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+... ++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999997421 245899999999999999999999999999999999999999999999999998776543 33
Q ss_pred -cceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 176 -DQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 176 -~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
+.++|++|++.+++. |++||+.++.. .....+..+ .+.+.++.+ |++......+.+||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 679999999998864 99999987421 111111111 112344444 6666667778899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEeCCEEE
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVV 315 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~ 315 (987)
||+.+|++|||||||++||+.+++.+.+.|.++. .++|+|++||+++.+..+|+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999885 379999999999998889999999999975
No 354
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.7e-41 Score=360.87 Aligned_cols=208 Identities=27% Similarity=0.444 Sum_probs=179.0
Q ss_pred cEEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---H
Q 001980 744 EIELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---L 819 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---l 819 (987)
.|+++|++++|++... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999964211 25999999999999999999999999999999999999999999999999998887653 2
Q ss_pred -hcccEEEccccccccc-cHHHHhccCC--CCC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 820 -RLKIGLVQQEPALFAA-SIFDNIAYGK--EGA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 820 -R~~i~~VpQdp~lF~g-TIreNL~~~~--~~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
+++++|+||++.+|.. |++||+.++. ... ..+++.++++..++.++....| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3689999999999874 9999997531 111 2345677788888766554433 4699999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEecCchhhhccCEEEEEeCCEEEEe
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-R-GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~-~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~ 962 (987)
++|||||+++|++|||||||++||+.+...+.+.|++.. + ++|||+|||+++.+..||+|++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999874 2 7899999999999988999999999999874
No 355
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.3e-41 Score=344.93 Aligned_cols=172 Identities=42% Similarity=0.712 Sum_probs=162.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++. ..++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+++.+.+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999643 235999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
|++|+|.+|.+|+++|+ ||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEE
Q 001980 905 LLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959 (987)
Q Consensus 905 LlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl~~G~i 959 (987)
|||||||++||+.+...+.+.|++.. +++|+|++||+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999875 47899999999999988999999999974
No 356
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=365.58 Aligned_cols=223 Identities=30% Similarity=0.494 Sum_probs=187.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--C---CCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--P---TAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--i~l 816 (987)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999963 359999999999999999999999999999999999975 4 58999999999864 345
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||++.+|..|+++|+.++.. .. . ++++.++++.+++.+.+. ........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 567889999999999999999999975421 11 1 234556667776654332 122334457999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767899999999999865 899999999999999999999
Q ss_pred hcCCCchH
Q 001980 969 VSRPDGAY 976 (987)
Q Consensus 969 l~~~~g~f 976 (987)
..++...+
T Consensus 235 ~~~~~~~~ 242 (252)
T PRK14255 235 FLNPKEKE 242 (252)
T ss_pred hcCCCChH
Confidence 87655444
No 357
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=376.95 Aligned_cols=228 Identities=24% Similarity=0.371 Sum_probs=189.5
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC----CCCceEEECCccCCCCCHHH
Q 001980 744 EIELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD----PTAGKVMIDGKDIRRLNLKS 818 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~----p~~G~I~idG~di~~i~l~~ 818 (987)
-|+++|++++|+.+. ...+|+||||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999996421 2369999999999999999999999999999999999986 58999999999999888766
Q ss_pred Hh----cccEEEcccccc--c-cccHHHHhccCC------C----C--CCHHHHHHHHHHcCchhhHhhCCCcCCCccCC
Q 001980 819 LR----LKIGLVQQEPAL--F-AASIFDNIAYGK------E----G--ATEAEVVEAARAANVHGFVSALPNAYKTPVGE 879 (987)
Q Consensus 819 lR----~~i~~VpQdp~l--F-~gTIreNL~~~~------~----~--~sd~ei~~al~~a~l~~~i~~lp~gldt~vge 879 (987)
++ ++|+||||+|.. + ..||.+|+.... . . ..++++.++++.+++.+.-.. + ..
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----~----~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA----M----RS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH----H----hC
Confidence 53 479999999963 2 358888885310 0 0 013456788888888643211 1 12
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeC
Q 001980 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQD 956 (987)
Q Consensus 880 ~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~ 956 (987)
....||||||||++|||||+.+|+||||||||++||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 2357999999999999999999999999999999999999999999998763 7899999999999965 899999999
Q ss_pred CEEEEecChhHHhcCCCchHHHH
Q 001980 957 GRIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 957 G~ive~Gt~~eLl~~~~g~f~~l 979 (987)
|+|+|.|+++++++++...|.+.
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHH
Confidence 99999999999998776677653
No 358
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.1e-41 Score=376.38 Aligned_cols=216 Identities=28% Similarity=0.472 Sum_probs=181.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ....++++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999974 3489999999999999999999999999999999999999999999999988653 34567889
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+|++|++.+++. |++||+.+... ..+..+..+.+ .+.++.+ |+.........+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 999999998864 99999975211 11222222111 1223333 45445566677899999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
+|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999885 48999999999999875 89999999999999999998864
No 359
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-41 Score=360.88 Aligned_cols=211 Identities=33% Similarity=0.598 Sum_probs=184.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 478999999952 27999999999999999999999999999999999999999999999999987654 378999
Q ss_pred EEcccccccc-ccHHHHhccCCCC--C----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGKEG--A----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~~~--~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
++||++.+|. .|++||+.++... . .++++.++++..++.+++.+.+ ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999885 7999999864321 1 2345667788888776655433 4699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
++++|++|+|||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.+
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 9999999999999999999999999999998653 8999999999999875 8999999999999999999998764
No 360
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.9e-41 Score=353.85 Aligned_cols=200 Identities=35% Similarity=0.565 Sum_probs=178.5
Q ss_pred EEEEeEEEECCCCCC--ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 100 IEFKNVTFSYPSRPD--VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 100 i~~~~~~~~y~~~~~--~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
++++|++++|++..+ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999975321 3599999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 178 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 178 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|+|++|+|.+|+.|++||+.++... ..++..++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||+.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPF-DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCc-CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999986432 344566677777788889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHH-HHhhh-CCCeEEEEcCCCCccccCCEEEEEeCCE
Q 001980 258 KILLLDEATSALDAGSESIVQEA-LDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQ 313 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~-l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~ 313 (987)
+++||||||++||+.+.+.+.+. +..+. +++|+|++||+++.+..+|++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999999999999888874 55553 4799999999999988899999999984
No 361
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2e-41 Score=366.39 Aligned_cols=212 Identities=27% Similarity=0.440 Sum_probs=185.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999963 36999999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEccccc-cccccHHHHhccCCCC----------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 825 LVQQEPA-LFAASIFDNIAYGKEG----------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 825 ~VpQdp~-lF~gTIreNL~~~~~~----------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
|+||++. .+..|+++|+.++... ..++++.++++..++.+.... ....||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHH
Confidence 9999985 4568999999765210 112356777777777554332 33579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
||||++.+|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999999875 4789999999999995 589999999999999999999864
No 362
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-41 Score=366.32 Aligned_cols=214 Identities=23% Similarity=0.436 Sum_probs=181.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH-hcc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l-R~~ 822 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999953 369999999999999999999999999999999999999999999999999998876654 456
Q ss_pred cEEEccccccccc-cHHHHhccCCCCC-----------------C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCC
Q 001980 823 IGLVQQEPALFAA-SIFDNIAYGKEGA-----------------T----EAEVVEAARAANVHGFVSALPNAYKTPVGER 880 (987)
Q Consensus 823 i~~VpQdp~lF~g-TIreNL~~~~~~~-----------------s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~ 880 (987)
++|+||+|.+|.+ |+++|+.++.... . .+.+.+.++..++ +......
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGL-----------LEHANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCCh-----------hhhhhCC
Confidence 9999999999985 9999998642100 0 0123333344433 3333445
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCC
Q 001980 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDG 957 (987)
Q Consensus 881 G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G 957 (987)
..+||||||||++|||||+++|++|||||||++||+.+...+.+.|.+..+ ++|||++||+++.+.+ ||+|++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 568999999999999999999999999999999999999999999998753 7899999999999866 8999999999
Q ss_pred EEEEecChhHHhcC
Q 001980 958 RIVEQGSHSELVSR 971 (987)
Q Consensus 958 ~ive~Gt~~eLl~~ 971 (987)
++++.|+++++..+
T Consensus 231 ~i~~~~~~~~~~~~ 244 (255)
T PRK11300 231 TPLANGTPEEIRNN 244 (255)
T ss_pred eEEecCCHHHHhhC
Confidence 99999999998754
No 363
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=9.8e-42 Score=357.32 Aligned_cols=203 Identities=26% Similarity=0.429 Sum_probs=172.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999963 3599999999999999999999999999999999999999999999999987654 45567899
Q ss_pred EEcCCCCCch-hcHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFA-TTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~-~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.+++ .|++||+.++.. ....+++.++++.. |+.......+.+||||||||++|||||+.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVV-----------GLKDSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHc-----------CCHHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 599999987532 11223333333333 444445556778999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|+++||||||++||+.+++.+.+.|.++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999875 48999999999999865 8999999999998764
No 364
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-41 Score=356.28 Aligned_cols=201 Identities=31% Similarity=0.541 Sum_probs=175.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++. . .|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5799999999532 2 39999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccccccccc-cHHHHhccCCC-C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE-G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~-~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+|.+ |++||+.++.. . ..++++.++++..++.++....| ..||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 99999986532 1 13456788888888876655443 3699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
++++|++|||||||++||+++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 37899999999999866 8999999999998864
No 365
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.7e-41 Score=374.18 Aligned_cols=212 Identities=22% Similarity=0.435 Sum_probs=184.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
++++|++++|++ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.. ....+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999953 469999999999999999999999999999999999999999999999999977 3457889999
Q ss_pred EEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||+|.+|.+ |++|||.+... ..+ .+++.++++..++.+.. .....+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHH
Confidence 99999999876 99999975321 112 23455666666665443 23345799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|+++|++|||||||++||+.+.+.+++.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998778999999999998876 899999999999999999999754
No 366
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=368.94 Aligned_cols=218 Identities=32% Similarity=0.496 Sum_probs=181.8
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CC
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQ 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 170 (987)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 18 ~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 18 IKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred ceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 46999999999974 3589999999999999999999999999999999999975 89999999999864 34
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C--CHHHHHHHHHHHhHHHHHHhCCCCCc----ccccCCCCCCChH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPE--A--TMAEVEAAASAANAHSFITLLPNGYS----TQVGERGVQLSGG 242 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~g~~----t~~~~~g~~LSgG 242 (987)
...+++.++|++|++.+|+.|+.||+.++... . ...+..+ .+.+.++.+ |+. +..+..+.+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDE-----IVETSLRKA--GLWEEVKDRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHH-----HHHHHHHHc--CCchhhhHHhhCCcccCCHH
Confidence 55678889999999999988999999875310 0 1111111 111222222 332 2456678899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChH
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 321 (987)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988767899999999999865 8999999999999999998
Q ss_pred HHHH
Q 001980 322 ELIA 325 (987)
Q Consensus 322 ~l~~ 325 (987)
++..
T Consensus 248 ~~~~ 251 (267)
T PRK14235 248 KMFT 251 (267)
T ss_pred HHHh
Confidence 8764
No 367
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-41 Score=359.57 Aligned_cols=209 Identities=33% Similarity=0.532 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++||+++|+. . ..|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. .++.++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 789999999953 2 249999999999999999999999999999999999999999999999887654 357899
Q ss_pred EEccccccccc-cHHHHhccCC-CC-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGK-EG-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~-~~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+|.+ |+++|+.++. +. ..++++.++++..++.+++...| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 9999998642 11 12456788899998887766554 3699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
++++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998753 7899999999999865 899999999999999999999865
No 368
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-41 Score=368.88 Aligned_cols=217 Identities=28% Similarity=0.522 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC-HHHHhcce
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ-LRWLRDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~~~i 178 (987)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 6899999999632 34899999999999999999999999999999999999999999999999997765 35667789
Q ss_pred EEEcCCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 GLVNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~~v~Q~~~--l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|++|+|. +++.|++||+.++... .+..+..+. +.+.++.+ |+.......+..||||||||++|||||+
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 4567999999886321 122222111 12233444 5666667778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
.+|+++||||||++||+.++..+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+.+++..
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999875 4899999999999998899999999999999999988754
No 369
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.4e-41 Score=375.44 Aligned_cols=223 Identities=29% Similarity=0.410 Sum_probs=185.1
Q ss_pred ccEEEEeEEEECCCCC----------CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 001980 98 GNIEFKNVTFSYPSRP----------DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK 167 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~----------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 167 (987)
..|+++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 3589999999996321 246899999999999999999999999999999999999999999999999998
Q ss_pred CCCHH---HHhcceEEEcCCC--CCch-hcHHHHHhcCC----CCCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCC
Q 001980 168 TLQLR---WLRDQIGLVNQEP--ALFA-TTILENILYGK----PEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERG 236 (987)
Q Consensus 168 ~~~~~---~~~~~i~~v~Q~~--~l~~-~tv~eni~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g 236 (987)
..+.. .+|++|+||+|+| .+++ .||.|||.++. +..+.++..+.. .+.++.+ |+. ......+
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~-----~~~l~~v--gl~~~~~~~~p 159 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV-----KAMMLKV--GLLPNLINRYP 159 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHc--CCChHHhcCCc
Confidence 87654 3567899999998 4664 59999997532 112222222211 2233333 442 2456778
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCE
Q 001980 237 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQ 313 (987)
Q Consensus 237 ~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~ 313 (987)
.+|||||||||+|||||+.+|+++|+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ 239 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGH 239 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999998853 8999999999999976 89999999999
Q ss_pred EEEecChHHHHHhh
Q 001980 314 VVETGTHEELIAKA 327 (987)
Q Consensus 314 i~~~g~~~~l~~~~ 327 (987)
|++.|+.+++.++.
T Consensus 240 ive~g~~~~i~~~~ 253 (331)
T PRK15079 240 AVELGTYDEVYHNP 253 (331)
T ss_pred EEEEcCHHHHHcCC
Confidence 99999999988653
No 370
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-41 Score=367.87 Aligned_cols=220 Identities=28% Similarity=0.518 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 24589999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 GLVNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~~v~Q~~~--l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|++|+|. ++..|++||+.++... .+.++... .+.+.++.+ |+.........+||||||||++|||||+
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 4466999999875321 12222211 112334443 5555567777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+..||++++|++|++++.|+.+++.+.
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998753 5899999999999888999999999999999998887653
No 371
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.4e-41 Score=364.20 Aligned_cols=216 Identities=33% Similarity=0.551 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC--CHHHHhcc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL--QLRWLRDQ 177 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~--~~~~~~~~ 177 (987)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... +...++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999973 3489999999999999999999999999999999999999999999999998764 33566778
Q ss_pred eEEEcCCCCCch-hcHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 178 IGLVNQEPALFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 178 i~~v~Q~~~l~~-~tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
++|++|++.++. .|++||+.++.. .....+..+ .+.+.++.+ |++.........||||||||++|||||
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999998886 499999987531 111111111 123344444 666667778889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
+.+|+++||||||++||+.++..+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 99999999999999999999999999998875 48999999999999865 89999999999999999888754
No 372
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-42 Score=371.38 Aligned_cols=216 Identities=34% Similarity=0.498 Sum_probs=178.5
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH----hc
Q 001980 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL----RD 176 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----~~ 176 (987)
.++|++++|++ ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 46688888864 348999999999999999999999999999999999999999999999999887665432 35
Q ss_pred ceEEEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 177 QIGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 177 ~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+++|++|++.+|+ .|++||+.++... .......+ .+.+.++.+ |+...+.....+||||||||++|||||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREE-----RAAEALELV--GLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 7999999999985 5999999875321 11111111 112233333 555455666779999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+.+|+++||||||++||+.+++.+.+.|.++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999884 37999999999998765 899999999999999999988653
No 373
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-41 Score=361.22 Aligned_cols=214 Identities=26% Similarity=0.452 Sum_probs=181.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH-Hhcc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~-lR~~ 822 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|++
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999963 36999999999999999999999999999999999999999999999999998877644 5789
Q ss_pred cEEEcccccccc-ccHHHHhccCCC---CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 823 IGLVQQEPALFA-ASIFDNIAYGKE---GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 823 i~~VpQdp~lF~-gTIreNL~~~~~---~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
++|+||++.+|. .|++||+.++.. ..+.+ .+.+.++..++ +.........||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI-----------EHLRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCC-----------HHHhhcchhhCCHHHHHHHHH
Confidence 999999999887 499999986421 11222 23334444433 333334456799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|||++++|++|||||||++||+.+...+.+.+++.. +++|+|++||+++.+. .||+|++|++|++++.|++++++..
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 999999999999999999999999999999998865 4889999999998775 4899999999999999999999754
No 374
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.9e-41 Score=377.23 Aligned_cols=213 Identities=28% Similarity=0.481 Sum_probs=183.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++...+ ...|++|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999963 35999999999999999999999999999999999999999999999999997654 5678999
Q ss_pred EEEccccccc-cccHHHHhccCCC--CCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALF-AASIFDNIAYGKE--GATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF-~gTIreNL~~~~~--~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+|+||++.+| ..|++||+.+... ..+..+ +.++++..++ ++..++.++ +||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~~~~----~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADARVS----DLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chhhCCChh----hCCHHHHHHHHHHH
Confidence 9999999886 5799999975321 122222 3344444444 334555554 69999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||+++|++|||||||++||+.+...+++.|+++. +++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999875 48999999999999865 899999999999999999999754
No 375
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.7e-41 Score=359.26 Aligned_cols=210 Identities=25% Similarity=0.456 Sum_probs=181.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||++.|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999953 3599999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccccccccccHHHHhccCC---CC-CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 824 GLVQQEPALFAASIFDNIAYGK---EG-ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 824 ~~VpQdp~lF~gTIreNL~~~~---~~-~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
+|+||++.+|..|++||+.++. .. ..++++.+.++..++.+. .......+||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDT----------ILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChH----------HhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999997531 11 123345566666665321 123344579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEe-CCEEEEecChh
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQ-DGRIVEQGSHS 966 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~-~G~ive~Gt~~ 966 (987)
++|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999999875 3789999999999998899999995 66777888885
No 376
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-41 Score=362.06 Aligned_cols=218 Identities=25% Similarity=0.410 Sum_probs=180.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-Hhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 177 (987)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999974 35899999999999999999999999999999999999999999999999998877543 5678
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
++|++|++.+|+. |++||+.++.......+....+ .+.++.++ ++.........+||||||||++|||||+.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999975 9999998864222222221111 11122221 112223446678999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999999875 48999999999997755 89999999999999999998864
No 377
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-41 Score=382.13 Aligned_cols=221 Identities=35% Similarity=0.525 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCCC---------------------ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 001980 99 NIEFKNVTFSYPSRPD---------------------VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~---------------------~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G 157 (987)
.|+++|+++.|+..+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 3777888887764321 2379999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHH----hcceEEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcc
Q 001980 158 HVLLDNVDIKTLQLRWL----RDQIGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYST 230 (987)
Q Consensus 158 ~i~~~g~~~~~~~~~~~----~~~i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t 230 (987)
+|.++|.++...+...+ +++++|++|++.+|+. |++||+.++... ...++..+ .+.+.++.+ |++.
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~--gL~~ 156 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERRE-----KALDALRQV--GLEN 156 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCh
Confidence 99999999988776443 4579999999999975 999999986321 11111111 122334444 6666
Q ss_pred cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEE
Q 001980 231 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVA 307 (987)
Q Consensus 231 ~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~ 307 (987)
.......+||||||||++|||||+.+|++|||||||++||+.+++.+++.|.++. .++|+|++||+++++.. ||+|+
T Consensus 157 ~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~ 236 (400)
T PRK10070 157 YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIA 236 (400)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEE
Confidence 6677778999999999999999999999999999999999999999999999874 48999999999998765 89999
Q ss_pred EEeCCEEEEecChHHHHHh
Q 001980 308 VIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 308 ~l~~G~i~~~g~~~~l~~~ 326 (987)
+|++|++++.|+++++...
T Consensus 237 vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 237 IMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred EEECCEEEecCCHHHHHhC
Confidence 9999999999999998764
No 378
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=365.36 Aligned_cols=218 Identities=29% Similarity=0.436 Sum_probs=182.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCCHHH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTLQLRW 173 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~ 173 (987)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 3899999999974 3489999999999999999999999999999999999974 7999999999998877777
Q ss_pred HhcceEEEcCCCCCc-hhcHHHHHhcCCCCC----CHHHHHHHHHHHhHHHHHHhCCCCC----cccccCCCCCCChHHH
Q 001980 174 LRDQIGLVNQEPALF-ATTILENILYGKPEA----TMAEVEAAASAANAHSFITLLPNGY----STQVGERGVQLSGGQK 244 (987)
Q Consensus 174 ~~~~i~~v~Q~~~l~-~~tv~eni~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~----~t~~~~~g~~LSgGqk 244 (987)
+++.|+|++|++.++ ..|++||+.++.... ...+..+ .+.+.++.+ |+ .......+.+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE-----RVRWALEKA--QLWDEVKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHH-----HHHHHHHHc--CCCcchhhhhcCCcccCCHHHH
Confidence 888999999999766 569999998753210 1111111 112223332 32 2345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+++|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998864 899999999999999999988
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 643
No 379
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.4e-41 Score=369.72 Aligned_cols=218 Identities=26% Similarity=0.445 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHh
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLR 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~ 175 (987)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 3589999999999999999999999999999999999999999999999998766543 346
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
++++|++|++.+|+. |++||+.++... ....... ....+.++.+ |+.........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH-----STVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999976 999999864211 1111111 1112233443 5555566677899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||+.+|+++||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998753 7999999999998876 899999999999999999998754
No 380
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-41 Score=370.69 Aligned_cols=220 Identities=29% Similarity=0.516 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHH
Q 001980 100 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL----QLRW 173 (987)
Q Consensus 100 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 173 (987)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997321 13589999999999999999999999999999999999999999999999998643 2455
Q ss_pred HhcceEEEcCCC--CCchhcHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHH
Q 001980 174 LRDQIGLVNQEP--ALFATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 174 ~~~~i~~v~Q~~--~l~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRia 248 (987)
.++.|+|++|+| .+|+.|++||+.++.. ....++..+ .+.+.++.+ |+. ........+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKV--GLSEDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhhCCcccCCHHHHHHHH
Confidence 677899999998 5777899999987532 112222211 122334444 665 3456778899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||||+.+|++|||||||++||+.+++.+.+.|.++. .|.|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999885 48999999999998865 899999999999999999887643
No 381
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.7e-41 Score=357.54 Aligned_cols=204 Identities=32% Similarity=0.499 Sum_probs=174.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---Hhc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LRL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR~ 821 (987)
|+++|++++|++ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999942 235999999999999999999999999999999999999999999999999998876543 688
Q ss_pred ccEEEcccccc-ccccHHHHhccCC--CCCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 822 KIGLVQQEPAL-FAASIFDNIAYGK--EGATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 822 ~i~~VpQdp~l-F~gTIreNL~~~~--~~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
.++|+||+|.+ +..|+++|+.++. ...+++ ++.++++..++.+...+ ....||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHH
Confidence 99999999986 5679999998642 122332 34566777776654433 235799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEE
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVE 961 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive 961 (987)
|||++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999874 47899999999999976 79999999999864
No 382
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-41 Score=379.33 Aligned_cols=213 Identities=30% Similarity=0.462 Sum_probs=187.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC----CHHHHh
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL----NLKSLR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~l~~lR 820 (987)
|++ |++++|.+ . .+ |+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++... .....|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999953 2 23 99999999999999999999999999999999999999999999998653 244568
Q ss_pred cccEEEcccccccc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 821 LKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 821 ~~i~~VpQdp~lF~-gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
++++|+||++.+|. .|+++|+.++.....++++.++++..++.++....| .+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHH
Confidence 89999999999996 699999988755455667888888888876655443 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCc
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDG 974 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g 974 (987)
++|++|||||||++||+.+.+.+++.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++..
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~ 222 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcch
Confidence 99999999999999999999999999998753 6899999999998865 899999999999999999999988653
No 383
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-41 Score=364.14 Aligned_cols=220 Identities=31% Similarity=0.509 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 6999999999963 3599999999999999999999999999999999999864 58999999999864 344
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCCC-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEG-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
..+|++++|+||++.+|..|+++|+.++... ..++++.++++.+++.+.+.. -++ .....||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~----~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD---KLK----EKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH---Hhc----CCcccCCHHHHHH
Confidence 5678999999999999989999999864211 123455667777777654432 122 3445799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEe---------CCEEEE
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQ---------DGRIVE 961 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~---------~G~ive 961 (987)
++|||||+++|++|||||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||+|++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998778999999999998865 89999997 899999
Q ss_pred ecChhHHhcCCC
Q 001980 962 QGSHSELVSRPD 973 (987)
Q Consensus 962 ~Gt~~eLl~~~~ 973 (987)
.|+++++...+.
T Consensus 250 ~g~~~~~~~~~~ 261 (274)
T PRK14265 250 FSPTEQMFGSPQ 261 (274)
T ss_pred eCCHHHHHhCCC
Confidence 999999987644
No 384
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-41 Score=366.74 Aligned_cols=219 Identities=33% Similarity=0.478 Sum_probs=182.6
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CC
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQ 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 170 (987)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999974 348999999999999999999999999999999999987 699999999998853 45
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCCC--CH---HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPEA--TM---AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
...++++++|++|++.+|+.|++||+.++.... .. +++.++++..++ ..++.+.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAV-------WDECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCC-------cchhhhhhCCCcccCCHHHHH
Confidence 667788899999999999889999999864311 11 112222222211 112334556777899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeC-----------CE
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQ-----------GQ 313 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~-----------G~ 313 (987)
|++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988768999999999998865 899999996 67
Q ss_pred EEEecChHHHHHh
Q 001980 314 VVETGTHEELIAK 326 (987)
Q Consensus 314 i~~~g~~~~l~~~ 326 (987)
+++.|+.+++...
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 8999999988653
No 385
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-41 Score=355.75 Aligned_cols=201 Identities=26% Similarity=0.507 Sum_probs=172.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999953 359999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+|.+ |++||+.++.. ..+ ++++.++++..++.+... ....+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHH
Confidence 99999999875 99999975421 111 234555666666654332 2345799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
++++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999999865 47899999999998865 8999999999998864
No 386
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=100.00 E-value=1.9e-40 Score=405.31 Aligned_cols=109 Identities=32% Similarity=0.492 Sum_probs=96.2
Q ss_pred cCCC-ccCCCCCCCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh
Q 001980 872 AYKT-PVGERGVQLSGGQKQRIAIARAVLKNP---AILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR 946 (987)
Q Consensus 872 gldt-~vge~G~~LSgGQrQrlaLARAllr~p---~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~ 946 (987)
|++. .++.....||||||||++|||+|+++| +++||||||++||+.+...+.+.|+++. ++.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4543 356677889999999999999999999 9999999999999999999999999875 5889999999999999
Q ss_pred ccCEEEEE------eCCEEEEecChhHHhcCCCchHHHHH
Q 001980 947 GVDCIGVV------QDGRIVEQGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 947 ~~D~Iivl------~~G~ive~Gt~~eLl~~~~g~f~~l~ 980 (987)
.||+|++| ++|+|++.|+|+++.+++.+.-.+.+
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l 937 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYL 937 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHH
Confidence 99999999 79999999999999987655444443
No 387
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-41 Score=370.69 Aligned_cols=221 Identities=31% Similarity=0.524 Sum_probs=189.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CC
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LN 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 815 (987)
..|+++||+++|++ .++|+++||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 36999999999964 359999999999999999999999999999999999986 689999999999875 34
Q ss_pred HHHHhcccEEEccccccccccHHHHhccCCCC-------------------CCHHHHHHHHHHcCchhhHhhCCCcCCCc
Q 001980 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEG-------------------ATEAEVVEAARAANVHGFVSALPNAYKTP 876 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~-------------------~sd~ei~~al~~a~l~~~i~~lp~gldt~ 876 (987)
...+|++++|+||++.+|.+|+++|+.++... ..++++.++++.+++.+.+ ++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV-------NDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh-------hHH
Confidence 66788999999999999999999999864210 1134466667777664333 233
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEE-EEE
Q 001980 877 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCI-GVV 954 (987)
Q Consensus 877 vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~I-ivl 954 (987)
......+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 45556789999999999999999999999999999999999999999999998777899999999999865 8997 578
Q ss_pred eCCEEEEecChhHHhcCCC
Q 001980 955 QDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 955 ~~G~ive~Gt~~eLl~~~~ 973 (987)
++|++++.|+++++++.++
T Consensus 274 ~~G~i~~~g~~~~~~~~~~ 292 (305)
T PRK14264 274 TGGELVEYDDTDKIFENPE 292 (305)
T ss_pred cCCEEEEeCCHHHHHhCcc
Confidence 9999999999999986543
No 388
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=366.94 Aligned_cols=220 Identities=29% Similarity=0.406 Sum_probs=181.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCC--CCCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIK--TLQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~--~~~~ 171 (987)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. ..+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999974 3489999999999999999999999999999999999987 4999999999986 3455
Q ss_pred HHHhcceEEEcCCCCCchh-cHHHHHhcCCCC----CCHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFAT-TILENILYGKPE----ATMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqk 244 (987)
..++++++|++|++.+|+. |++||+.++... ...+...... .+.++.+ ...+.......+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 155 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERV-----EWALKKAALWDEVKDRLNDYPSNLSGGQR 155 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHH-----HHHHHHcCCccchhhhhccChhhCCHHHH
Confidence 5677889999999999976 999999875311 0111111111 1122222 11112345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767999999999998765 899999999999999999888
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14267 236 FEN 238 (253)
T ss_pred HhC
Confidence 653
No 389
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=5.6e-41 Score=363.27 Aligned_cols=224 Identities=28% Similarity=0.448 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc-----CCCCCHHH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD-----IRRLNLKS 818 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~d-----i~~i~l~~ 818 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999964 359999999999999999999999999999999999999999999999999 87776654
Q ss_pred ----HhcccEEEccccc--cc-cccHHHHhccCC---CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 819 ----LRLKIGLVQQEPA--LF-AASIFDNIAYGK---EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 819 ----lR~~i~~VpQdp~--lF-~gTIreNL~~~~---~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
+|+.++|+||++. ++ ..|+.+|+.+.. .... ++.+.++++..++.+ +.....+..|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~L 152 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTF 152 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccC
Confidence 3567999999984 33 357888875321 1111 122333344433321 2334556789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEE
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVE 961 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive 961 (987)
|||||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998653 7899999999999974 89999999999999
Q ss_pred ecChhHHhcCCCchHHHHH
Q 001980 962 QGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 962 ~Gt~~eLl~~~~g~f~~l~ 980 (987)
.|+++++..++...|.+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (258)
T PRK11701 233 SGLTDQVLDDPQHPYTQLL 251 (258)
T ss_pred eCCHHHHhcCCCCHHHHHH
Confidence 9999999876555565443
No 390
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-41 Score=365.48 Aligned_cols=220 Identities=30% Similarity=0.484 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999743 23589999999999999999999999999999999999999999999999999887777788899
Q ss_pred EEEcCCCC-Cc-hhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 GLVNQEPA-LF-ATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~~v~Q~~~-l~-~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|++|+|. +| ..|+++|+.++... ...++..+. +.+.++.+ |+.......+.+||||||||++|||||+
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRR-----VSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999995 44 55999999886321 112221111 11223333 4444556677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998753 7999999999998878999999999999999999987654
No 391
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-41 Score=362.42 Aligned_cols=217 Identities=25% Similarity=0.441 Sum_probs=184.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-Hhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 177 (987)
.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999974 35899999999999999999999999999999999999999999999999998776543 5678
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
++|++|++.+++. |++||+.+.... ...++. ...+.+.++.+ |++........+||||||||++|||||
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999998875 999999875321 111111 11223445555 666666778889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
+.+|++|||||||++||+.+++.+.+.+.++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999998875 48999999999987765 89999999999999999988754
No 392
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.8e-41 Score=369.98 Aligned_cols=214 Identities=32% Similarity=0.509 Sum_probs=182.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|+. ...+|+||||+|++|+++|++||||||||||+|+|+|++.|++|+|.++|.+...- ..+.+++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999973 23599999999999999999999999999999999999999999999999988765 66778899
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
||+||+|.+++. |++||+.|.... ...+++.+.+ +.+ |+......+...||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l---------~~~--~L~~~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL---------ELF--GLEDKANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHH---------HHc--CCchhhCcchhhcCHHHHHHHHHHH
Confidence 999999998876 999999874221 1122333333 333 4433235567789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC-C-CeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-G-RTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||+.+|++|||||||++|||.++..+.+.|+++.+ + +||+++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999864 5 799999999999987 899999999999999998887543
No 393
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-42 Score=334.13 Aligned_cols=223 Identities=26% Similarity=0.446 Sum_probs=190.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~ 177 (987)
.+.++|+.++|.. +++++++||++++||+|++.||||+||||.+.++.|+.+|++|+|.+||.|++.++.... |-.
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 4889999999974 458999999999999999999999999999999999999999999999999999998654 446
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|||+||+|.+|.+ ||+|||..-.+... .......+...+.+.++.+ .+.......+..||||||+|+.|||||+.+
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~-~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIRE-KDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcC
Confidence 9999999999987 99999986543111 1111122222333445555 677778889999999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCc-cccCCEEEEEeCCEEEEecChHHHHHhh
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLST-IRNVDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~-~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
|+.+||||||+++||.+...|++.++.++ +|..|++.-|+..+ +.-|||.|++.+|++..+|+++|+.++.
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 99999999999999999999999999886 58899999999875 5669999999999999999999997653
No 394
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-41 Score=368.69 Aligned_cols=221 Identities=28% Similarity=0.476 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCC---CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC-HHHH
Q 001980 99 NIEFKNVTFSYPSRP---DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ-LRWL 174 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~---~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~ 174 (987)
.++++|++++|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997431 245999999999999999999999999999999999999999999999999987643 3456
Q ss_pred hcceEEEcCCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 175 RDQIGLVNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 175 ~~~i~~v~Q~~~--l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
++.++|++|+|. ++..|+.||+.|+... ....+..+. +.+.++.+ |+.........+||||||||++||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~la 156 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER-----VDESLKKV--GMYEYRRHAPHLLSGGQKQRVAIA 156 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHH
Confidence 788999999984 5666999999986321 111111111 12223333 555556667789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||+.+|+++||||||++||+.++..+.+.|.++. .|.|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999999885 38999999999999888999999999999999999998654
No 395
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-41 Score=367.30 Aligned_cols=213 Identities=30% Similarity=0.474 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999974 3589999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCC-------C---HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEA-------T---MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
+|++|++.++.. |+.||+.++.... . .+++... ++.+ |+.........+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEA---------ISLV--GLKPLAHRLVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHH---------HHHc--CCHHHhcCCcccCCHHHHHHH
Confidence 999999877665 9999998753210 0 1122222 3332 444445556678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
+|||||+.+|+++||||||++||+.+++.+.+.|.++. . ++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999885 3 7999999999999865 8999999999999999988875
Q ss_pred H
Q 001980 325 A 325 (987)
Q Consensus 325 ~ 325 (987)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
No 396
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.7e-41 Score=361.67 Aligned_cols=221 Identities=27% Similarity=0.462 Sum_probs=185.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-Hhcce
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i 178 (987)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+..+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999974 35899999999999999999999999999999999999999999999999988776554 34579
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCCC--HHH---HHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEAT--MAE---VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
+|++|++.+|++ |++||+.++..... ... .........+.+.++.+ |++........+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999987 99999987532100 000 00001111233445554 66666778888999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999998778999999999999875 89999999999999999988754
No 397
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2e-41 Score=345.42 Aligned_cols=178 Identities=34% Similarity=0.629 Sum_probs=163.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999753 23589999999999999999999999999999999999999999999999988665 556778899
Q ss_pred EEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 001980 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 259 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~i 259 (987)
|++|++++++.|++||+ +.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999988999998 358999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEec
Q 001980 260 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG 318 (987)
Q Consensus 260 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g 318 (987)
+||||||++||+.+++.+.+.|.++.+++|+|++||+++.+..+|++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999886789999999999999889999999999998754
No 398
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.7e-41 Score=357.78 Aligned_cols=209 Identities=33% Similarity=0.524 Sum_probs=172.8
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH---HHHh
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL---KSLR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l---~~lR 820 (987)
|+++||+++|++.. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 1259999999999999999999999999999999999999999999999999988774 5778
Q ss_pred cccEEEcccc--ccc-cccHHHHhccCC----CCCCHHHH----HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 821 LKIGLVQQEP--ALF-AASIFDNIAYGK----EGATEAEV----VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 821 ~~i~~VpQdp--~lF-~gTIreNL~~~~----~~~sd~ei----~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
++++|+||+| .++ ..|+++|+.++. +...+++. .+.++..++.+ ........+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 9999999999 344 579999997531 11112211 13344444321 122344467999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEec
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~G 963 (987)
||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|||++||+++.+. .||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998764 789999999999987 58999999999998865
No 399
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-41 Score=366.89 Aligned_cols=219 Identities=29% Similarity=0.488 Sum_probs=183.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|+++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 2489999999999999999999999999999999999999999999999999877777778899
Q ss_pred EEEcCCCC--CchhcHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 GLVNQEPA--LFATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~~v~Q~~~--l~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|++|+|. +++.|++||+.++.. ..+.++..+ ...+.++.+ |+.......+..||||||||++|||||+
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSALHML--GLEELRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 677899999987532 112221111 112233333 4444456667799999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|+++||||||++||+.+++.+.+.++++.+ +.|+|++||+++.+. .||||++|++|++++.|+++++.+.
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999998753 899999999999985 5899999999999999999998754
No 400
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.6e-41 Score=372.84 Aligned_cols=216 Identities=24% Similarity=0.406 Sum_probs=185.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+++++|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999973 358999999999999999999999999999999999999999999999999876 3456778899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|+||++.+++. |++||+.+.... ...++..+ ...+.++.+ |++........+||||||||++|||||+++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 999999763211 11111111 122344554 676667788889999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+++||||||++||+.+++.+++.++++.+++|+|++||+++.+.. ||||++|++|+++..|+.+++.+.
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999998778999999999998876 899999999999999999998653
No 401
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-41 Score=369.74 Aligned_cols=222 Identities=28% Similarity=0.496 Sum_probs=182.1
Q ss_pred ccEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC----C-C
Q 001980 98 GNIEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT----L-Q 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~----~-~ 170 (987)
+.|+++|++++|+++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4599999999997532 1358999999999999999999999999999999999999999999999998852 1 3
Q ss_pred HHHHhcceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHH
Q 001980 171 LRWLRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQ 245 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkq 245 (987)
...+++.|+|++|+| .+++.|++||+.++... ...++..+. +.+.++.+ |+. ......+.+|||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLV--QLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCChhhCCHHHHH
Confidence 456778899999998 46778999999876321 122222111 11223333 442 3456777899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEE 322 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 322 (987)
|++|||||+.+|++|||||||++||+.+++.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999875 38999999999998765 89999999999999999988
Q ss_pred HHHh
Q 001980 323 LIAK 326 (987)
Q Consensus 323 l~~~ 326 (987)
+...
T Consensus 238 ~~~~ 241 (289)
T PRK13645 238 IFSN 241 (289)
T ss_pred HhcC
Confidence 7653
No 402
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.6e-41 Score=362.74 Aligned_cols=218 Identities=35% Similarity=0.548 Sum_probs=183.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC--------
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ-------- 170 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-------- 170 (987)
.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3889999999974 34899999999999999999999999999999999999999999999999986532
Q ss_pred HHHHhcceEEEcCCCCCch-hcHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHH
Q 001980 171 LRWLRDQIGLVNQEPALFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqR 246 (987)
...+++.++|++|++.+++ .|++||+.++.. ....++..+ .+.+.++.+ |+.......+.+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 2456778999999999886 599999986421 111111111 122344444 66655677888999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
++|||||+.+|+++||||||++||+.+++.+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999875 48999999999999865 8999999999999999998876
Q ss_pred Hh
Q 001980 325 AK 326 (987)
Q Consensus 325 ~~ 326 (987)
+.
T Consensus 233 ~~ 234 (250)
T PRK11264 233 AD 234 (250)
T ss_pred cC
Confidence 43
No 403
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.3e-41 Score=360.29 Aligned_cols=214 Identities=31% Similarity=0.487 Sum_probs=178.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-Hhcce
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i 178 (987)
|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999974 35899999999999999999999999999999999999999999999999998776654 45689
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
+|++|++.+|+. |++||+.++........ .+. ..+.++.+ +++.........+||||||||++|||||+++|
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~-~~~-----~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRS-RKI-----PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcch-HHH-----HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999976 99999987632211110 000 01112211 11233456677799999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999998753 7999999999999886 899999999999999999887
No 404
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.6e-41 Score=366.95 Aligned_cols=220 Identities=30% Similarity=0.451 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCC------CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-
Q 001980 100 IEFKNVTFSYPSR------PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR- 172 (987)
Q Consensus 100 i~~~~~~~~y~~~------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~- 172 (987)
|+++|++|+|+.. .+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 134689999999999999999999999999999999999999999999999999876653
Q ss_pred --HHhcceEEEcCCCC--Cch-hcHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHH
Q 001980 173 --WLRDQIGLVNQEPA--LFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQ 243 (987)
Q Consensus 173 --~~~~~i~~v~Q~~~--l~~-~tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGq 243 (987)
.+++.|+|++|+|. +++ .|++||+.++.. ....... ...+.+.++.+ |++ ......+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQ-----KARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 35678999999983 443 599999975321 0111111 11123344444 664 34577788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecCh
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTH 320 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 320 (987)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999998853 8999999999999875 899999999999999999
Q ss_pred HHHHHh
Q 001980 321 EELIAK 326 (987)
Q Consensus 321 ~~l~~~ 326 (987)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 998763
No 405
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-41 Score=362.12 Aligned_cols=205 Identities=31% Similarity=0.467 Sum_probs=174.8
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED 82 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence 35999999999974 34899999999999999999999999999999999999999999999998753 35678
Q ss_pred eEEEcCCCCCch-hcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
++|++|++.+++ .|++||+.++......+++. +.++.+ |+.......+.+||||||||++|||||+.+
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAAL---------QALAAV--GLADRANEWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcccchHHHHHH---------HHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999887 59999999864211112222 233333 555556677789999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 321 (987)
|+++||||||++||+.++..+.+.|.++. .++|+|++||+++.+.. ||+|++|++|+++++|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999998874 37999999999998765 8999999999999888654
No 406
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.3e-41 Score=360.22 Aligned_cols=213 Identities=35% Similarity=0.518 Sum_probs=174.7
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHh
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWLR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~ 175 (987)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999997431 1258999999999999999999999999999999999999999999999999987663 4677
Q ss_pred cceEEEcCCC--CCc-hhcHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHH
Q 001980 176 DQIGLVNQEP--ALF-ATTILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 176 ~~i~~v~Q~~--~l~-~~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRia 248 (987)
++++|++|++ .++ ..|++||+.++... ...++..+.. ..+.++.+ |+. ......+.+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 8899999999 344 45999999864211 1111111100 01334444 553 4567778899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|||||+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998853 8999999999999874 8999999999998754
No 407
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.8e-41 Score=356.91 Aligned_cols=201 Identities=34% Similarity=0.573 Sum_probs=171.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC--CCHHHHhcc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR--LNLKSLRLK 822 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~--i~l~~lR~~ 822 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999964 359999999999999999999999999999999999999999999999999853 455678899
Q ss_pred cEEEcccccccc-ccHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 823 IGLVQQEPALFA-ASIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 823 i~~VpQdp~lF~-gTIreNL~~~~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
++|+||++.+|. .|++||+.++.. ..+. +++.++++..++.+.... ...+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-----------YPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-----------CccccCHHHHHHHHH
Confidence 999999999886 699999976421 2222 234555666655444332 335799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEE
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRI 959 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~i 959 (987)
|||++++|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 47899999999999965 899999999975
No 408
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-41 Score=358.73 Aligned_cols=209 Identities=35% Similarity=0.498 Sum_probs=173.2
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
++++|++++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997421 1459999999999999999999999999999999999999999999999998763 35689
Q ss_pred EEEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+|++|++.+++ .|++||+.++... ....... ..+.+.++.+ |+.........+||||||||++|||||+.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999887 5999999875321 1111111 1122334444 55555666778999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEe--CCEEEEecCh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQ--QGQVVETGTH 320 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~--~G~i~~~g~~ 320 (987)
+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|+ +|+++++++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999874 37999999999998765 89999999 7999988764
No 409
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-41 Score=367.46 Aligned_cols=220 Identities=29% Similarity=0.519 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---cEEEECCEeCCCCCHHHHh
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA---GHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~~ 175 (987)
.|+++|++|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...++
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999743 2358999999999999999999999999999999999999998 8999999999877766777
Q ss_pred cceEEEcCCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 176 DQIGLVNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 176 ~~i~~v~Q~~~--l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
++|+|++|+|. +++.|++||+.++... .+.++..+. +.+.++.+ |+.........+||||||||++|||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~lar 156 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKI-----VRDVLADV--GMLDYIDSEPANLSGGQKQRVAIAG 156 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHH-----HHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHH
Confidence 89999999984 4577999999876332 122221111 12223333 5555566777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||+.+|+++||||||++||+.+++.+.+.|.++.+ |+|||++||+++.+..||++++|++|++++.|+++++...
T Consensus 157 al~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 157 ILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998753 8999999999999888999999999999999999887653
No 410
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2e-41 Score=356.43 Aligned_cols=207 Identities=31% Similarity=0.534 Sum_probs=173.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGNV---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECCe---eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 4789999999743 489999999999999999999999999999999999999999999999998765432 35799
Q ss_pred EEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.+++ .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 4999999875321 11122111 112233443 555556677789999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999875 38999999999998876 8999999999998765
No 411
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-41 Score=365.47 Aligned_cols=221 Identities=29% Similarity=0.430 Sum_probs=180.8
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CC
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQ 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 170 (987)
..++++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 20 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 35899999999974 348999999999999999999999999999999999864 799999999999864 33
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPEA---TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkq 245 (987)
...++++++|++|++.+|+.|++||+.++.... ......+. +.+.+..+ ..++....+..+.+|||||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEI-----VEESLTKAALWDEVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHcCCCcchHHHHhcCcccCCHHHHH
Confidence 446678899999999999889999998753211 11111111 11112222 111123456778899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
|++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998767899999999998765 8999999999999999998876
Q ss_pred Hh
Q 001980 325 AK 326 (987)
Q Consensus 325 ~~ 326 (987)
..
T Consensus 252 ~~ 253 (268)
T PRK14248 252 TS 253 (268)
T ss_pred hC
Confidence 53
No 412
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-41 Score=368.79 Aligned_cols=220 Identities=32% Similarity=0.547 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHH
Q 001980 100 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL----QLRW 173 (987)
Q Consensus 100 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 173 (987)
++++|++++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 13589999999999999999999999999999999999999999999999998753 3456
Q ss_pred HhcceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHH
Q 001980 174 LRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 174 ~~~~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRia 248 (987)
+++.|+|++|++ .+++.|++||+.++... .+.++..+. +.+.++.+ |+. ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 778899999998 57788999999875321 122222211 12334433 554 3456778899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||||+.+|++|||||||++||+.+++.+.+.|.++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999875 48999999999998865 899999999999999999887653
No 413
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-41 Score=364.40 Aligned_cols=220 Identities=29% Similarity=0.461 Sum_probs=181.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCC--H
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTLQ--L 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~--~ 171 (987)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+ .
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999973 3489999999999999999999999999999999999985 8999999999886432 3
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
..+++.++|++|++.+|+.|++||+.++... ...++..+ .+.+.++.+ ...........+.+||||||||+
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG-----VVENALRSAALWDETSDRLKSPALSLSGGQQQRL 163 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH
Confidence 4567789999999999989999999875311 11221111 111222322 00112345667789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999988768999999999998865 899999999999999999988643
No 414
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-41 Score=362.86 Aligned_cols=212 Identities=26% Similarity=0.419 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC--------CceEEECCccCCCCCH
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT--------AGKVMIDGKDIRRLNL 816 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~--------~G~I~idG~di~~i~l 816 (987)
|+++|++++|.+ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999953 35999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhcccEEEccccc-cccccHHHHhccCCC-C------C---CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 001980 817 KSLRLKIGLVQQEPA-LFAASIFDNIAYGKE-G------A---TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 885 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~-lF~gTIreNL~~~~~-~------~---sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 885 (987)
..+|+.++|+||++. +|..|++||+.++.. . . .++.++++++..++.++ .......||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATAL-----------VGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCC
Confidence 888889999999986 678999999976421 1 1 12345666666666443 333446799
Q ss_pred hhHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEE
Q 001980 886 GGQKQRIAIARAVL---------KNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGV 953 (987)
Q Consensus 886 gGQrQrlaLARAll---------r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iiv 953 (987)
||||||++|||||+ .+|++|||||||++||+.+...+.+.|++..+ ++|||+|||+++.+. .||+|++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998753 789999999999986 5899999
Q ss_pred EeCCEEEEecChhHHhc
Q 001980 954 VQDGRIVEQGSHSELVS 970 (987)
Q Consensus 954 l~~G~ive~Gt~~eLl~ 970 (987)
|++|++++.|++++++.
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999875
No 415
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.2e-41 Score=364.12 Aligned_cols=217 Identities=32% Similarity=0.537 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---------
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ--------- 170 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~--------- 170 (987)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999974 35899999999999999999999999999999999999999999999999886543
Q ss_pred ----HHHHhcceEEEcCCCCCch-hcHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChH
Q 001980 171 ----LRWLRDQIGLVNQEPALFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG 242 (987)
Q Consensus 171 ----~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgG 242 (987)
...+++.++|++|++.+++ .|+.||+.++.. ......... .+.+.++.+ |++....+.+.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2356778999999999886 599999987521 111111111 123445554 6666677788899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecC
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT 319 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 319 (987)
||||++|||||+.+|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. +|++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998753 8999999999999864 89999999999999999
Q ss_pred hHHHHHh
Q 001980 320 HEELIAK 326 (987)
Q Consensus 320 ~~~l~~~ 326 (987)
++++.+.
T Consensus 231 ~~~~~~~ 237 (252)
T TIGR03005 231 PDEIFRQ 237 (252)
T ss_pred HHHHhcC
Confidence 9888643
No 416
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-41 Score=364.30 Aligned_cols=216 Identities=30% Similarity=0.461 Sum_probs=183.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999973 35899999999999999999999999999999999999999999999999988777777778899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCCC----C--HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 180 LVNQEPALFAT-TILENILYGKPEA----T--MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
|++|++.++++ |+.||+.++.... . ..+.. ..+.+.++.+ |++......+..||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lara 152 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDN-----ARVNQAMEQT--RINHLADRRLTDLSGGQRQRAFLAMV 152 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHH-----HHHHHHHHHc--CCHHHHcCCcccCCHHHHHHHHHHHH
Confidence 99999988876 9999999863210 0 01110 0111223332 45445566778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
++.+|+++||||||++||+.+++.+.+.|.++. +++|+|++||+++.+.. +|++++|++|+++..|+.+++..
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999998875 48999999999999865 89999999999999999988754
No 417
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3.7e-41 Score=356.76 Aligned_cols=213 Identities=29% Similarity=0.430 Sum_probs=180.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5899999999974 3489999999999999999999999999999999999999999999999999888777778899
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
+|++|++.+|+.|++||+.++.......... ..+.+.++.+ |+. +.....+.+||||||||++|||||+++|
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP-----AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHH-----HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999889999998642100000000 1112344444 553 4567788899999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEe-CCEEEEecChH
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQ-QGQVVETGTHE 321 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~-~G~i~~~g~~~ 321 (987)
+++||||||++||+.+.+.+.+.|.++. .++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 157 KVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999874 3889999999999998899999994 66677778765
No 418
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3.5e-41 Score=377.19 Aligned_cols=205 Identities=29% Similarity=0.434 Sum_probs=171.7
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE----eCCCCCHHHH---h-cceEEEcCCCC
Q 001980 115 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV----DIKTLQLRWL---R-DQIGLVNQEPA 186 (987)
Q Consensus 115 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~----~~~~~~~~~~---~-~~i~~v~Q~~~ 186 (987)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...+ | ++|+|++|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35799999999999999999999999999999999999999999999996 5555554433 3 57999999999
Q ss_pred Cch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 001980 187 LFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 263 (987)
Q Consensus 187 l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlD 263 (987)
+|+ .|++||+.++... ...++.. ..+.+.++.+ |+.........+||||||||++|||||+.+|+|||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~-----~~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERR-----KRVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 997 5999999987421 1111111 1112334443 5655566677899999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHHh
Q 001980 264 EATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 264 Epts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||++||+.+++.+++.|.++.+ ++|+|+|||+++++. .+|+|++|++|++++.|+++++..+
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 99999999999999999998853 899999999999875 4899999999999999999998764
No 419
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=8.1e-41 Score=360.94 Aligned_cols=226 Identities=28% Similarity=0.414 Sum_probs=187.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC----CCceEEECCccCCCCCHHHH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP----TAGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p----~~G~I~idG~di~~i~l~~l 819 (987)
.|+++|++++| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 3 2589999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcccEEEccccc-ccc--ccHHHHhccC----CCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 820 RLKIGLVQQEPA-LFA--ASIFDNIAYG----KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 820 R~~i~~VpQdp~-lF~--gTIreNL~~~----~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
++.++||||++. .|. .|+.+|+... .....+++++++++..++.++. +.+......||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA--------RVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChh--------hhhhcCCcccCHHHHHHH
Confidence 467999999985 343 5777776431 1223456778888888876531 122344567999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+|||||+++|+||||||||++||+.+...+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|++++++
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999999865 8999999999999999999998
Q ss_pred cCCCc-hHHHHHHhh
Q 001980 970 SRPDG-AYSRLLQLQ 983 (987)
Q Consensus 970 ~~~~g-~f~~l~~~q 983 (987)
+++.. .++.++..+
T Consensus 230 ~~~~~~~~~~~~~~~ 244 (254)
T PRK10418 230 NAPKHAVTRSLVSAH 244 (254)
T ss_pred hCCCCHHHHHHHHhh
Confidence 76544 455566554
No 420
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-41 Score=361.53 Aligned_cols=218 Identities=30% Similarity=0.521 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEeCCCC--CH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-----AGHVLLDNVDIKTL--QL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~-----~G~i~~~g~~~~~~--~~ 171 (987)
.++++|++|+|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 4899999999974 34899999999999999999999999999999999999997 69999999988643 34
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C-CHHHH----HHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE--A-TMAEV----EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~-~~~~~----~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
..+++.++|++|++.+|+.|++||+.++... . ..++. .++++..++ .+++.......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAAL-------WDEVKDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCC-------chhhhhHhhCCcccCCHHHH
Confidence 5678889999999999988999999876321 1 11111 112222221 11223446678889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988668999999999999876 799999999999999999887
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 543
No 421
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-41 Score=341.76 Aligned_cols=221 Identities=29% Similarity=0.481 Sum_probs=191.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcce
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~i 178 (987)
+++++++++|++ ..+++|+||++++||+++|+||||||||||+++|+|+|+|++|+|.++|+++..+++..+ |..|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 679999999984 459999999999999999999999999999999999999999999999999999988765 4569
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCC-----------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHH
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEA-----------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqR 246 (987)
+--+|.+.+|++ ||.||+..+.... ...+..++ ...+.+.++.+ |+....++...+||+|||+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~--~e~A~~~Le~v--gL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREA--RERARELLEFV--GLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHH--HHHHHHHHHHc--CCchhhcchhhcCChhHhHH
Confidence 999999999987 9999999863211 00011111 12223455555 88888888999999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
+.|||||+.+|++|+||||.++|.+...+.+.+.|+++++ |.|+++|.||++.+.. ||||+||+.|+++.+|+++|+
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9999999999999999999999999999999999999974 5999999999999865 899999999999999999998
Q ss_pred HHhh
Q 001980 324 IAKA 327 (987)
Q Consensus 324 ~~~~ 327 (987)
.++.
T Consensus 238 ~~dp 241 (250)
T COG0411 238 RNNP 241 (250)
T ss_pred hcCH
Confidence 7653
No 422
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-41 Score=365.77 Aligned_cols=217 Identities=28% Similarity=0.425 Sum_probs=179.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC--CCCHHHHhcc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK--TLQLRWLRDQ 177 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~~~ 177 (987)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...++++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999974 34899999999999999999999999999999999999999999999999985 2334566778
Q ss_pred eEEEcCCCC--CchhcHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 178 IGLVNQEPA--LFATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 178 i~~v~Q~~~--l~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
|+|++|++. ++..|+.+|+.++.. ....++..+. +.+.++.+ |+.........+||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 999999985 566799999987421 1122221111 12223333 444344566779999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+.+|+++||||||++||+.+++.+.+.|.++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999875 48999999999999865 899999999999999999887653
No 423
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-41 Score=365.01 Aligned_cols=219 Identities=26% Similarity=0.392 Sum_probs=184.4
Q ss_pred CccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc
Q 001980 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 176 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 176 (987)
...|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++
T Consensus 5 ~~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 5 VARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred ccEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 346999999999974 35899999999999999999999999999999999999999999999999998877777778
Q ss_pred ceEEEcCCCCCch-hcHHHHHhcCCC-CC-----CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 177 QIGLVNQEPALFA-TTILENILYGKP-EA-----TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 177 ~i~~v~Q~~~l~~-~tv~eni~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
.++|++|++.++. .|++||+.++.. .. ..+.. ...+.+.++.+ |+.......+.+||||||||++|
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~l 154 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED-----EEAVTKAMQAT--GITHLADQSVDTLSGGQRQRAWI 154 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHH-----HHHHHHHHHHc--CCHHHhcCCcccCChHHHHHHHH
Confidence 8999999998875 599999987531 10 00110 01112233333 45445567778999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|||++.+|+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999999999999999998853 7899999999998765 89999999999999999988764
No 424
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=4.3e-41 Score=363.99 Aligned_cols=219 Identities=32% Similarity=0.524 Sum_probs=183.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC--------
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL-------- 169 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~-------- 169 (987)
+.++++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 45999999999974 3589999999999999999999999999999999999999999999999987532
Q ss_pred -----CHHHHhcceEEEcCCCCCchh-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccc-cCCCCCC
Q 001980 170 -----QLRWLRDQIGLVNQEPALFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQV-GERGVQL 239 (987)
Q Consensus 170 -----~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~-~~~g~~L 239 (987)
+...++++++|++|++.+++. |++||+.++.. ........ ..+.+.++.+ |+.... ...+.+|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR-----ERAVKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHc--CCChhhhhCCcccC
Confidence 124567789999999999975 99999986421 11111111 1122344444 565543 6677899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEe
Q 001980 240 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVET 317 (987)
Q Consensus 240 SgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~ 317 (987)
|||||||++|||||+++|+++||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||||++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999885 48999999999999886 899999999999999
Q ss_pred cChHHHHHh
Q 001980 318 GTHEELIAK 326 (987)
Q Consensus 318 g~~~~l~~~ 326 (987)
|+++++...
T Consensus 234 ~~~~~~~~~ 242 (257)
T PRK10619 234 GAPEQLFGN 242 (257)
T ss_pred CCHHHhhhC
Confidence 999887643
No 425
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.1e-41 Score=355.81 Aligned_cols=205 Identities=37% Similarity=0.617 Sum_probs=171.8
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 001980 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 180 (987)
+++|++++|++. ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999742 1358999999999999999999999999999999999999999999999999987777777889999
Q ss_pred EcCCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 181 VNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 181 v~Q~~~--l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
++|++. +++.|++||+.++... ....+..+ .+.+.++.+ |++..+.....+||||||||++|||||+++
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999984 5677999999875321 11111111 112334444 555556677789999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCE
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQ 313 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~ 313 (987)
|+++||||||++||+.+++.+.+.|.++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999885 48999999999999887 89999999984
No 426
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-41 Score=363.26 Aligned_cols=220 Identities=27% Similarity=0.444 Sum_probs=181.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--P---NAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--~---~~G~i~~~g~~~~~--~~~ 171 (987)
.|+++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999974 348999999999999999999999999999999999997 3 69999999999863 344
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkqR 246 (987)
..+++.++|++|++.+|+.|++||+.++.... ..++..+. +.+.++.+ .+.+.+.....+.+||||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEI-----VEKSLKDVALWDEVKDRLHTQALSLSGGQQQR 163 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHH-----HHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 56778899999999999889999998753211 11111111 11222222 1111234567788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
++|||||+.+|+++||||||++||+.++..+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 243 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFS 243 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 99999999999999999999999999999999999998778999999999998865 89999999999999999998865
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
+
T Consensus 244 ~ 244 (259)
T PRK14274 244 N 244 (259)
T ss_pred C
Confidence 3
No 427
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=5.6e-41 Score=360.72 Aligned_cols=213 Identities=24% Similarity=0.380 Sum_probs=177.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc--CCCCCceEEECCccCCCCCHHHH-hc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF--YDPTAGKVMIDGKDIRRLNLKSL-RL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~i~l~~l-R~ 821 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++...+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 3599999999999999999999999999999999999 47999999999999988877664 45
Q ss_pred ccEEEccccccccc-cHHHHhccCCCC---------CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 822 KIGLVQQEPALFAA-SIFDNIAYGKEG---------AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 822 ~i~~VpQdp~lF~g-TIreNL~~~~~~---------~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
.++|+||+|.+|.+ |+++|+.+.... .+ ++.+.++++..++.+.. .+..+. ..||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G 148 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGG 148 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHH
Confidence 69999999998875 899998643110 11 23345555555553211 122222 249999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc--cCEEEEEeCCEEEEecC
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG--VDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~--~D~Iivl~~G~ive~Gt 964 (987)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999875 47899999999999976 79999999999999999
Q ss_pred hhHHh
Q 001980 965 HSELV 969 (987)
Q Consensus 965 ~~eLl 969 (987)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 98654
No 428
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-41 Score=361.32 Aligned_cols=216 Identities=29% Similarity=0.445 Sum_probs=182.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++ ..+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999974 34899999999999999999999999999999999999999999999999988777777778899
Q ss_pred EEcCCCCC-chhcHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc--
Q 001980 180 LVNQEPAL-FATTILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML-- 254 (987)
Q Consensus 180 ~v~Q~~~l-~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~-- 254 (987)
|++|++.+ ++.|++||+.++.... ..++..+ .+.+.++.+ |+.........+||||||||++|||||+
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDA-----LVAAALAQV--DLAHLAGRDYPQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHH-----HHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 99999987 4569999998863211 1111111 112233333 5555556677899999999999999999
Q ss_pred ----cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 255 ----KNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 255 ----~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999999875 48999999999999874 89999999999999999988764
No 429
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=7.9e-41 Score=351.51 Aligned_cols=202 Identities=34% Similarity=0.580 Sum_probs=176.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
++++||+++|+. .++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999987644 4678899
Q ss_pred EEcccccccc-ccHHHHhccCC-CC-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGK-EG-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~-~~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||+|.+|. .|++||+.++. +. ..++++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999987 49999997542 11 13456777888888877665554 3699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt 964 (987)
++++|+++||||||++||+++...+.+.|++.. .++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999875 37899999999998865 89999999999999874
No 430
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=4.6e-41 Score=340.88 Aligned_cols=172 Identities=41% Similarity=0.697 Sum_probs=160.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++. ..++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999743 245899999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 001980 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 259 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~i 259 (987)
|++|++++|+.|++||+ ||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999998 999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEEEeCCEE
Q 001980 260 LLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQV 314 (987)
Q Consensus 260 lllDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i 314 (987)
+||||||++||+.++..+.+.|+++. +++|+|++||+++.+..||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999885 48999999999998888999999999974
No 431
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.7e-41 Score=355.79 Aligned_cols=205 Identities=33% Similarity=0.520 Sum_probs=169.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~~ 176 (987)
++++|++++|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 23589999999999999999999999999999999999999999999999999876543 4567
Q ss_pred ceEEEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 177 QIGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 177 ~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
.++|++|++.+|+ .|++||+.++... .......+ .+.+.++.+ |+.........+||||||||++|||||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQR-----RVGAALRQV--GLEHKADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 8999999999986 4999999875211 11111111 112233333 444344556679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCE
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQ 313 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~ 313 (987)
+.+|+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|+
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999875 48999999999999876 89999999984
No 432
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=9.9e-41 Score=352.26 Aligned_cols=210 Identities=32% Similarity=0.478 Sum_probs=183.1
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH----HHHhc
Q 001980 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL----RWLRD 176 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~~~ 176 (987)
.+.|+.|+|+.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...++
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 458999999999999999999999999999999999999999999999998865432 23456
Q ss_pred ceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 177 QIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
.++|++|+|.+++.|++||+.++.+. ..++..++++..++.+.+..+|.|+++.++....+||||||||++|||||+.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPF-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcC-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 79999999999988999999986532 34455666777777777888899999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHH--HHHhhh-CCCeEEEEcCCCCccccCCEEEEEeCCE
Q 001980 257 PKILLLDEATSALDAGSESIVQE--ALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQ 313 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~--~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~ 313 (987)
|+++||||||++||+.+++.+.+ .++.+. .+.|+|++||+++.+..+|++++|++|.
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887 455554 3799999999999988899999999873
No 433
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-41 Score=359.83 Aligned_cols=215 Identities=27% Similarity=0.458 Sum_probs=181.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC------CCHHH
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT------LQLRW 173 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~------~~~~~ 173 (987)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999974 348999999999999999999999999999999999999999999999998731 23356
Q ss_pred HhcceEEEcCCCCCchh-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 174 LRDQIGLVNQEPALFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 174 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
++++|+|++|++.+|+. |++||+.++.. .....+.. ..+.+.++.+ |++..+.....+||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 67789999999999875 99999975311 11111111 1223445554 66666777788999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
||||+.+|+++||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. +|++++|++|++++.|+++++.
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 999999999999999999999999999999999875 48999999999999865 8999999999999999988764
No 434
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.2e-40 Score=361.45 Aligned_cols=223 Identities=25% Similarity=0.428 Sum_probs=187.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC---CceEEECCccCCCC-----C
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT---AGKVMIDGKDIRRL-----N 815 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~---~G~I~idG~di~~i-----~ 815 (987)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 35999999999999999999999999999999999999986 49999999998654 3
Q ss_pred HHHHhcccEEEcccccccc-ccHHHHhccCCCC--------------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCC
Q 001980 816 LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEG--------------ATEAEVVEAARAANVHGFVSALPNAYKTPVGER 880 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~-gTIreNL~~~~~~--------------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~ 880 (987)
...+|++++|+||++.+|. .|+++|+.++... ..++++.++++..++.+.... .
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------R 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------C
Confidence 4567889999999999887 5999999764211 113356677777777554432 3
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCC
Q 001980 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDG 957 (987)
Q Consensus 881 G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~-~~D~Iivl~~G 957 (987)
...||||||||++|||||+.+|++|||||||++||.++...+.+.|++.. +++|+|+|||+++.+. .||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 34699999999999999999999999999999999999999999999875 3789999999999865 58999999999
Q ss_pred EEEEecChhHHhcCCCchHHHHHHhh
Q 001980 958 RIVEQGSHSELVSRPDGAYSRLLQLQ 983 (987)
Q Consensus 958 ~ive~Gt~~eLl~~~~g~f~~l~~~q 983 (987)
++++.|+++++ . +....+++...
T Consensus 230 ~i~~~g~~~~~-~--~~~~~~~~~~~ 252 (262)
T PRK09984 230 HVFYDGSSQQF-D--NERFDHLYRSI 252 (262)
T ss_pred EEEEeCCHHHh-c--cHHHHHHHhhh
Confidence 99999999997 2 34566666544
No 435
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-41 Score=361.00 Aligned_cols=220 Identities=31% Similarity=0.456 Sum_probs=181.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC---CCC--CccEEEECCEeCCCC--CH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF---YDP--NAGHVLLDNVDIKTL--QL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~---~~~--~~G~i~~~g~~~~~~--~~ 171 (987)
.++++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4889999999974 3489999999999999999999999999999999997 455 589999999998654 34
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE--A-TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkqR 246 (987)
..+++.++|++|++.+|+.|++||+.++... . ..+...+. ..+.++.+ +..+.+.....+.+||||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQR-----VEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHH-----HHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 5667789999999999988999999875321 1 11111111 11223322 1112344567788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999998778999999999998855 89999999999999999999865
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
.
T Consensus 235 ~ 235 (250)
T PRK14245 235 N 235 (250)
T ss_pred C
Confidence 3
No 436
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-41 Score=360.87 Aligned_cols=217 Identities=32% Similarity=0.506 Sum_probs=180.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 171 (987)
.|+++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 4899999999974 3489999999999999999999999999999999999763 69999999999864 344
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCCC---CHH----HHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
..+++.++|++|++.+|+.|++||+.++.... ..+ ++.++++..++. +++.......+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALW-------DEVKDRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-------hhhHHHHhcCCCCCCHHHH
Confidence 56778899999999998899999998763211 111 122222222111 1222345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. +|++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 899999999999999999887
Q ss_pred HH
Q 001980 324 IA 325 (987)
Q Consensus 324 ~~ 325 (987)
..
T Consensus 233 ~~ 234 (250)
T PRK14240 233 FT 234 (250)
T ss_pred Hh
Confidence 54
No 437
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.1e-41 Score=354.54 Aligned_cols=206 Identities=32% Similarity=0.506 Sum_probs=171.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~ 176 (987)
++++|++++|++. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999642 348999999999999999999999999999999999999999999999999877654 24667
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
.++|++|++.+|+. |++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELV--GLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 89999999999875 999999875321 11111111 112233333 444445566679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEE
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQV 314 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 314 (987)
+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999874 58999999999999876 899999999974
No 438
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=5.1e-41 Score=370.97 Aligned_cols=200 Identities=27% Similarity=0.478 Sum_probs=173.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccc-cHH
Q 001980 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIF 838 (987)
Q Consensus 760 ~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~g-TIr 838 (987)
.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.. ....+|++++|+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 369999999999999999999999999999999999999999999999999976 345678999999999999875 999
Q ss_pred HHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q 001980 839 DNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 912 (987)
Q Consensus 839 eNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS 912 (987)
|||.+... ..+ ++++.++++..++.+.. +..+ .+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-------DRPV----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------CCch----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99975321 112 23466677777765432 3333 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 913 ALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 913 ~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
+||+.+.+.+++.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999875 47899999999999875 899999999999999999998754
No 439
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-41 Score=361.91 Aligned_cols=222 Identities=23% Similarity=0.423 Sum_probs=185.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~ 177 (987)
.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999973 358999999999999999999999999999999999999999999999999987765443 456
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCCC----------HHHH--HHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEAT----------MAEV--EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~~----------~~~~--~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
++|++|++.+++. |++||+.++..... .... ..........+.++.+ |+.......+.+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 9999999999986 99999997531100 0000 0000111223445555 676777888899999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 321 (987)
||++|||||+.+|++|||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999998853 7899999999999865 8999999999999999988
Q ss_pred HHHH
Q 001980 322 ELIA 325 (987)
Q Consensus 322 ~l~~ 325 (987)
++..
T Consensus 240 ~~~~ 243 (255)
T PRK11300 240 EIRN 243 (255)
T ss_pred HHhh
Confidence 8754
No 440
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=362.37 Aligned_cols=222 Identities=28% Similarity=0.431 Sum_probs=183.3
Q ss_pred CccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--C
Q 001980 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--L 169 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~ 169 (987)
...|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 446999999999963 358999999999999999999999999999999999996 589999999999864 3
Q ss_pred CHHHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHH
Q 001980 170 QLRWLRDQIGLVNQEPALFATTILENILYGKPE--A-TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 170 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqk 244 (987)
+...+++.|+|++|++.+|+.|++||+.++... . ..+..... +.+.++.+ .++.++..+..+.+||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEI-----VETSLKQAALWDQVKDDLHKSALTLSGGQQ 169 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHH-----HHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence 345667889999999999989999999875321 1 11111111 11122222 11223456778889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+++|+++||||||++||+.+++.+.+.|.++.++.|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998855 899999999999999999988
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
...
T Consensus 250 ~~~ 252 (267)
T PRK14237 250 FTN 252 (267)
T ss_pred hcC
Confidence 653
No 441
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=8.3e-41 Score=355.54 Aligned_cols=212 Identities=28% Similarity=0.406 Sum_probs=174.8
Q ss_pred cEEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---H
Q 001980 99 NIEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW---L 174 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~-~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 174 (987)
.|+++|++++|++... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974321 25899999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hcceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 175 -RDQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 175 -~~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
++.++|++|++.+++. |++||+.++.. .....+.. ..+.+.++.+ |+.........+||||||||++||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSR-----NGAKALLEQL--GLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHH
Confidence 3579999999998875 99999986421 11111111 1122334443 444445566779999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCccccCCEEEEEeCCEEEEe
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRNVDTVAVIQQGQVVET 317 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~ 317 (987)
|||+.+|+++||||||++||+.+++.+.+.|+++. + ++|+|++||+++.+..||++++|++|+++++
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999874 3 7899999999998888999999999999764
No 442
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.2e-41 Score=333.88 Aligned_cols=221 Identities=29% Similarity=0.486 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH-Hhcc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~-lR~~ 822 (987)
-++++|++..|.. ..+|++|||++++||.++++||||+||||++++|+|+.+|.+|+|.++|.||...+++. .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999953 46999999999999999999999999999999999999999999999999999999887 5889
Q ss_pred cEEEcccccccc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 823 IGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 823 i~~VpQdp~lF~-gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
|+||||...+|. -||.|||.+|.....+++-++ ..+++..+-+| -|.......+.+|||||+|-+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999995 699999987632222111100 00111112223 233344566778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCC
Q 001980 902 PAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|++|+|||||.+|-|.--+.|.++|++..+ +-||+.|-++..... -+||.+||++|+|+..|+.++|.+++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 999999999999999999999999999874 569999999999765 57999999999999999999999764
No 443
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-41 Score=363.79 Aligned_cols=220 Identities=33% Similarity=0.483 Sum_probs=182.7
Q ss_pred CccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--C
Q 001980 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--L 169 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~--~ 169 (987)
...++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999974 3489999999999999999999999999999999999884 89999999999864 3
Q ss_pred CHHHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C-CHH----HHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChH
Q 001980 170 QLRWLRDQIGLVNQEPALFATTILENILYGKPE--A-TMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG 242 (987)
Q Consensus 170 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~-~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgG 242 (987)
+...+++.++|++|++.+|+.|++||+.++... . ..+ ++.++++..++ ...+.+..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAAL-------WDEVKDRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCC-------ChhHHHHhhCCcccCCHH
Confidence 445678899999999999988999999875321 1 111 12222222211 111223567778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChH
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 321 (987)
||||++|||||+++|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999998778999999999998765 8999999999999999998
Q ss_pred HHHHh
Q 001980 322 ELIAK 326 (987)
Q Consensus 322 ~l~~~ 326 (987)
++...
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 87643
No 444
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-41 Score=371.05 Aligned_cols=222 Identities=30% Similarity=0.440 Sum_probs=182.7
Q ss_pred cEEEEeEEEECCCCC-------CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH
Q 001980 99 NIEFKNVTFSYPSRP-------DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~-------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~ 171 (987)
.|+++|++++|+... ...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhcceEEEcCCC--CCchh-cHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCCh
Q 001980 172 R---WLRDQIGLVNQEP--ALFAT-TILENILYGK---PEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSG 241 (987)
Q Consensus 172 ~---~~~~~i~~v~Q~~--~l~~~-tv~eni~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSg 241 (987)
. .+|++|+||+|+| .+++. |+.+|+.... ......+.. ..+.+.++.+ |++ ......+.+|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERR-----EKALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHC--CCChHHhcCCCccCCH
Confidence 3 4677899999998 35554 9999886421 111111111 1122334443 443 234667789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 242 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 242 GqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|||||++|||||+.+|++||+||||++||+.++..+.+.|.++.+ |.|+|+|||+++.+.. ||+|++|.+|+|++.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999998853 8999999999999975 8999999999999999
Q ss_pred ChHHHHHhh
Q 001980 319 THEELIAKA 327 (987)
Q Consensus 319 ~~~~l~~~~ 327 (987)
+.++++++.
T Consensus 238 ~~~~~~~~p 246 (327)
T PRK11308 238 TKEQIFNNP 246 (327)
T ss_pred CHHHHhcCC
Confidence 999998753
No 445
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.6e-41 Score=355.52 Aligned_cols=201 Identities=29% Similarity=0.460 Sum_probs=165.4
Q ss_pred EEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 001980 102 FKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLV 181 (987)
Q Consensus 102 ~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 181 (987)
++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .++++++|+
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 6799999974 34899999999999999999999999999999999999999999999998764 356789999
Q ss_pred cCCCCC---chhcHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 182 NQEPAL---FATTILENILYGKPEA------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 182 ~Q~~~l---~~~tv~eni~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
+|++.+ ++.|++||+.++.... ..++.. ..+.+.++.+ |++........+||||||||++||||
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~a 146 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK-----AKVDEALERV--GLSELADRQIGELSGGQQQRVLLARA 146 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHH-----HHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHHH
Confidence 999876 4579999998764311 001111 1112333333 44444556677999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|+.+|+++||||||++||+.+++.+.+.|.++. +++|+|++||+++++.. ||++++|++| +++.|
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999875 58999999999999865 8999999886 55543
No 446
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-41 Score=362.58 Aligned_cols=218 Identities=31% Similarity=0.473 Sum_probs=180.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 171 (987)
.|+++|++|+|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999974 358999999999999999999999999999999999997 489999999998854 334
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhCCCCC----cccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE--A-TMAEVEAAASAANAHSFITLLPNGY----STQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~g~----~t~~~~~g~~LSgGqk 244 (987)
..+++.++|++|++.+|+.|++||+.++... . ..+...+. +.+.++.+ |+ .......+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQR-----VEESLKQA--AIWKETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHH-----HHHHHHHc--CCCcchHHHhccChhhCCHHHH
Confidence 5567789999999999989999999875321 1 11111111 11222222 22 1234667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767999999999998765 899999999999999999887
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
...
T Consensus 234 ~~~ 236 (251)
T PRK14251 234 FIA 236 (251)
T ss_pred HhC
Confidence 643
No 447
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-40 Score=363.45 Aligned_cols=218 Identities=31% Similarity=0.502 Sum_probs=181.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC--CCHHHHhcc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT--LQLRWLRDQ 177 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~~ 177 (987)
++++|++++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 6899999999632 348999999999999999999999999999999999999999999999999852 233456788
Q ss_pred eEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 178 IGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 178 i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
|+|++|+| .+++.|+.||+.++... ....+..+ .+.+.++.+ |+.......+.+||||||||++|||||
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999997 46788999999875321 11111111 112233333 454445566789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+.+|+++||||||++||+.++..+.+.|.++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999885 48999999999999874 899999999999999999988653
No 448
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=7.5e-41 Score=361.89 Aligned_cols=221 Identities=29% Similarity=0.427 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999974 35999999999999999999999999999999999999999999999999998888777777899
Q ss_pred EEcCCCCCc-hhcHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 180 LVNQEPALF-ATTILENILYGKPEA-TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 180 ~v~Q~~~l~-~~tv~eni~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|++|++.++ ..|++||+.++.... .............+.+.+..+ |+.......+..||||||||++|||||+.+|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999998654 569999998863210 000000000011123334444 4545566677899999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999885 47899999999999954 89999999999999999988754
No 449
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=361.31 Aligned_cols=218 Identities=29% Similarity=0.447 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 171 (987)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999974 358999999999999999999999999999999999986 489999999998853 345
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCCC--C---HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPEA--T---MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqR 246 (987)
..++++++|++|++.+|+.|++||+.++.... . .+++.++++.+++.+.+ .......+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHH
Confidence 66778899999999999889999998764211 1 11222233333332222 223466778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEe---------CCEEEE
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQ---------QGQVVE 316 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~---------~G~i~~ 316 (987)
++|||||+++|++|||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998767899999999998865 89999998 899999
Q ss_pred ecChHHHHHh
Q 001980 317 TGTHEELIAK 326 (987)
Q Consensus 317 ~g~~~~l~~~ 326 (987)
.|+.+++.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999998653
No 450
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.2e-41 Score=364.77 Aligned_cols=214 Identities=30% Similarity=0.534 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+.+|.. +..+|+||||+|++||.+|++||||||||||+++|.|++.|++|+|.++|.|...- ...+|+++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999962 23699999999999999999999999999999999999999999999999998765 67889999
Q ss_pred EEEcccccccc-ccHHHHhccCC-----C-CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGK-----E-GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~-----~-~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
||+||+|.++. -|++|||.+.. + ...++.+.+.++..++.+.- +.++ ..||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~----~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKKV----RTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccch----hhcCHHHHHHHHHHH
Confidence 99999999775 59999998642 1 12356788899999887621 2333 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-CeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR-G-RTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~-~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||+.+|++|||||||++||+.+...+++.|+++.+ + +||++.||.++.+.. ||+|++|++|+++.+|+++++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999875 4 799999999999987 899999999999999999998654
No 451
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1e-40 Score=375.45 Aligned_cols=213 Identities=30% Similarity=0.481 Sum_probs=181.6
Q ss_pred eEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC----HHHHhcccE
Q 001980 749 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN----LKSLRLKIG 824 (987)
Q Consensus 749 ~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----l~~lR~~i~ 824 (987)
|++++|.+ .. + |+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 79999953 23 5 999999999999999999999999999999999999999999999986542 345688999
Q ss_pred EEccccccccc-cHHHHhccCCCCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKEGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
|+||++.+|.. |+++|+.++..... ++.+.+.++..++.++... ....||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGR-----------LPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHH
Confidence 99999999975 99999987643222 2235666777666554433 33579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAY 976 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f 976 (987)
++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+++..|
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 99999999999999999999999999998753 7899999999999865 89999999999999999999998766555
Q ss_pred H
Q 001980 977 S 977 (987)
Q Consensus 977 ~ 977 (987)
.
T Consensus 228 ~ 228 (354)
T TIGR02142 228 L 228 (354)
T ss_pred c
Confidence 3
No 452
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-41 Score=363.11 Aligned_cols=220 Identities=25% Similarity=0.423 Sum_probs=182.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 171 (987)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999974 348999999999999999999999999999999999987 699999999999853 344
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCC--CCCHHH-HHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKP--EATMAE-VEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkqR 246 (987)
..++++++|++|++.+|+.|++||+.++.. ....++ .... +.+.+..+ ..++.......+.+||||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI-----VEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR 175 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence 566788999999999998899999987532 111111 1111 11112211 1133345567788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
++|||||+.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 255 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFS 255 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998778999999999999865 89999999999999999998865
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
.
T Consensus 256 ~ 256 (271)
T PRK14238 256 N 256 (271)
T ss_pred C
Confidence 3
No 453
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=360.05 Aligned_cols=220 Identities=26% Similarity=0.443 Sum_probs=181.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCC--CH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTL--QL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 171 (987)
.|+++|++|+|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999974 3489999999999999999999999999999999999763 489999999998765 44
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkqR 246 (987)
...++.++|++|++.+|+.|++||+.++.... ......+. +.+.++.+ ..++.+..++.+.+||||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTI-----VEKSLKGAALWDEVKDRLHDSALSLSGGQQQR 157 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHH-----HHHHHHHhcCchhhHHHhhcChhhCCHHHHHH
Confidence 56677899999999999889999999863211 11111111 11112211 1223345677888999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
++|||||+.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 99999999999999999999999999999999999988767999999999999865 89999999999999999988764
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
.
T Consensus 238 ~ 238 (253)
T PRK14261 238 N 238 (253)
T ss_pred C
Confidence 3
No 454
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-41 Score=353.08 Aligned_cols=205 Identities=25% Similarity=0.481 Sum_probs=172.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. .++++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 358999999999999999999999999999999999999999999999987753 4567899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.+++. |++||+.+.... ....+.. ..+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999998875 999999874211 1111111 1223445554 666666777889999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998875 47899999999998865 8999999999998754
No 455
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.1e-40 Score=352.97 Aligned_cols=208 Identities=27% Similarity=0.454 Sum_probs=172.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~~ 176 (987)
|+++|++++|++ +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 689999999942 23589999999999999999999999999999999999999999999999998776543 3677
Q ss_pred ceEEEcCCCCCc-hhcHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 177 QIGLVNQEPALF-ATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 177 ~i~~v~Q~~~l~-~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
.++|++|+|.++ +.|++||+.++.. ....++..+.+ .+.++.+ |+.........+||||||||++|||||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRV-----SAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHH-----HHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 899999999875 5699999987531 11222221111 1223333 444445667789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEE
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVE 316 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~ 316 (987)
+.+|+++||||||++||+.+++.+.+.|.++. ++.|+|++||+++++.. ||+|++|++|+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999875 47899999999999876 89999999999853
No 456
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=360.34 Aligned_cols=220 Identities=28% Similarity=0.433 Sum_probs=180.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CC---CccEEEECCEeCCCC--CH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY--DP---NAGHVLLDNVDIKTL--QL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~--~~---~~G~i~~~g~~~~~~--~~ 171 (987)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999974 34899999999999999999999999999999999985 46 599999999998643 34
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE---ATMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkqR 246 (987)
..+++.++|++|++.+|+.|++||+.++... ...+...+. +.+.++.+ ..++.+..+..+.+||||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEA-----VEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHH-----HHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 4567789999999999999999999875211 111111111 11222222 1112234567788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988667999999999998765 89999999999999999998865
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
.
T Consensus 237 ~ 237 (252)
T PRK14239 237 N 237 (252)
T ss_pred C
Confidence 4
No 457
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-41 Score=370.62 Aligned_cols=222 Identities=25% Similarity=0.356 Sum_probs=178.6
Q ss_pred cEEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCEeCCCCCHHH
Q 001980 99 NIEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD----PNAGHVLLDNVDIKTLQLRW 173 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~-~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 173 (987)
.++++|++++|+.... ..+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++..++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999975322 458999999999999999999999999999999999998 48999999999998887655
Q ss_pred Hh----cceEEEcCCCC--Cchh-cHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHhCCCCCc---ccccCCCCCCC
Q 001980 174 LR----DQIGLVNQEPA--LFAT-TILENILYGK---PEATMAEVEAAASAANAHSFITLLPNGYS---TQVGERGVQLS 240 (987)
Q Consensus 174 ~~----~~i~~v~Q~~~--l~~~-tv~eni~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---t~~~~~g~~LS 240 (987)
++ +.|+|++|+|. +.+. |+.+++.... .....++..+ .+.+.++.+ |+. ...+..+.+||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~-----~~~~~L~~~--gL~~~~~~l~~~p~~LS 155 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQ-----RAIDLLNQV--GIPDPASRLDVYPHQLS 155 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChHHHHhCCchhCC
Confidence 43 36999999984 4433 6666554221 0111111111 112333333 443 34567888999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEe
Q 001980 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVET 317 (987)
Q Consensus 241 gGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~ 317 (987)
||||||++|||||+.+|+++|+||||++||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||+|++|.+|+|++.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999985 38999999999999865 899999999999999
Q ss_pred cChHHHHHhh
Q 001980 318 GTHEELIAKA 327 (987)
Q Consensus 318 g~~~~l~~~~ 327 (987)
|+.+++.++.
T Consensus 236 g~~~~~~~~p 245 (326)
T PRK11022 236 GKAHDIFRAP 245 (326)
T ss_pred CCHHHHhhCC
Confidence 9999998653
No 458
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=363.17 Aligned_cols=219 Identities=28% Similarity=0.479 Sum_probs=180.1
Q ss_pred CccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--C
Q 001980 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--L 169 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~ 169 (987)
...|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 345999999999974 358999999999999999999999999999999999997 689999999999854 3
Q ss_pred CHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHHhCCCCC----cccccCCCCCCChHHH
Q 001980 170 QLRWLRDQIGLVNQEPALFATTILENILYGKPEA-TMAEVEAAASAANAHSFITLLPNGY----STQVGERGVQLSGGQK 244 (987)
Q Consensus 170 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~----~t~~~~~g~~LSgGqk 244 (987)
+...++++++|++|++.+|+.|++||+.++.... ......+ .+.+.++.+ |+ ...+++++.+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~i~~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDE-----RVEESLRRA--ALWDEVKDQLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHH-----HHHHHHHHc--CCCchhHHHHhCCcccCCHHHH
Confidence 4556778999999999999889999998752110 0011111 112223322 22 2345677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEE-EEeCCEEEEecChHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVA-VIQQGQVVETGTHEE 322 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~-~l~~G~i~~~g~~~~ 322 (987)
||++|||||+++|+||||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|++++.|++++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998766899999999999876 89975 579999999999888
Q ss_pred HHH
Q 001980 323 LIA 325 (987)
Q Consensus 323 l~~ 325 (987)
+..
T Consensus 267 ~~~ 269 (285)
T PRK14254 267 IFE 269 (285)
T ss_pred HHh
Confidence 754
No 459
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=374.60 Aligned_cols=211 Identities=30% Similarity=0.480 Sum_probs=179.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHHHh
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL----QLRWLR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~~ 175 (987)
|++ |++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +....+
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 999999742 23 89999999999999999999999999999999999999999999988643 233456
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
++++|++|++.+|+. |++||+.++......+++. +.++.+ |+.........+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFD---------KIVALL--GIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHH---------HHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 789999999999975 9999999875422222232 233333 5555566777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|++++.|+++++..+.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999998753 7899999999998765 8999999999999999999987653
No 460
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=358.78 Aligned_cols=217 Identities=29% Similarity=0.474 Sum_probs=181.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCC-CCCHH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIK-TLQLR 172 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~-~~~~~ 172 (987)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999973 3489999999999999999999999999999999999986 5999999999885 34556
Q ss_pred HHhcceEEEcCCCCCchhcHHHHHhcCCCC--CC-HH----HHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 173 WLRDQIGLVNQEPALFATTILENILYGKPE--AT-MA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 173 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~~-~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
.+++.++|++|++.+|+.|++||+.++... .. .+ ++.++++..++ .+++.+.....+.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAAL-------WDEVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCC-------chhhhHHhhcCcccCCHHHHH
Confidence 778889999999999989999999876321 11 11 11122222211 112224456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
|++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998767999999999999876 8999999999999999988775
Q ss_pred H
Q 001980 325 A 325 (987)
Q Consensus 325 ~ 325 (987)
.
T Consensus 233 ~ 233 (249)
T PRK14253 233 S 233 (249)
T ss_pred c
Confidence 3
No 461
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=5.5e-41 Score=353.29 Aligned_cols=205 Identities=35% Similarity=0.561 Sum_probs=172.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC--CCHHHHhcc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT--LQLRWLRDQ 177 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~~ 177 (987)
++++|++++|++ .++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999974 348999999999999999999999999999999999999999999999998853 344566788
Q ss_pred eEEEcCCCCCch-hcHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 178 IGLVNQEPALFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 178 i~~v~Q~~~l~~-~tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
++|++|++.+++ .|++||+.++.. ....++..+ .+.+.++.+ |+...+.....+||||||||++|||||
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999986 599999987532 111111111 112344444 666666777889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEE
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQV 314 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 314 (987)
+.+|+++||||||++||+.+++.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999885 47999999999999865 899999999974
No 462
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=362.38 Aligned_cols=220 Identities=30% Similarity=0.490 Sum_probs=183.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCC-HH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTLQ-LR 172 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~-~~ 172 (987)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999974 3589999999999999999999999999999999999986 7999999999987653 34
Q ss_pred HHhcceEEEcCCCCCchhcHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHHHH
Q 001980 173 WLRDQIGLVNQEPALFATTILENILYGKPE---ATMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 173 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
.++.+++|++|++.+|+.|++||+.++... .+.++..... .+.++.+ ...+.+.+...+.+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 567889999999999999999999876321 1222222111 1222322 11222445677889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|||||+.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988667899999999998765 899999999999999999998654
No 463
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-40 Score=370.57 Aligned_cols=223 Identities=26% Similarity=0.426 Sum_probs=181.1
Q ss_pred cEEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCCCHHHH
Q 001980 99 NIEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN---AGHVLLDNVDIKTLQLRWL 174 (987)
Q Consensus 99 ~i~~~~~~~~y~~~-~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~ 174 (987)
.++++|++++|+.. ....+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999642 2346899999999999999999999999999999999999996 9999999999988876654
Q ss_pred ---h-cceEEEcCCC--CCchh-cHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHh--CCCCCcccccCCCCCCChH
Q 001980 175 ---R-DQIGLVNQEP--ALFAT-TILENILYGK---PEATMAEVEAAASAANAHSFITL--LPNGYSTQVGERGVQLSGG 242 (987)
Q Consensus 175 ---~-~~i~~v~Q~~--~l~~~-tv~eni~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~t~~~~~g~~LSgG 242 (987)
| ++|+||+|+| .+++. |+.+|+.... ...+.++..+. +.+.++. ++++. ..++..+.+||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~-----~~~~L~~vgL~~~~-~~~~~~p~~LSgG 165 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEE-----SVRMLDAVKMPEAR-KRMKMYPHEFSGG 165 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCCChH-HHhcCCcccCCHH
Confidence 3 4799999998 45553 8888775321 11122221111 1122222 23222 3357788999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecC
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT 319 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 319 (987)
||||++|||||+.+|+++|+||||++||+.++..+.+.|+++.+ +.|+|+||||++.+.. ||+|++|.+|+|++.|+
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999998853 8999999999999875 89999999999999999
Q ss_pred hHHHHHhh
Q 001980 320 HEELIAKA 327 (987)
Q Consensus 320 ~~~l~~~~ 327 (987)
.+++.+..
T Consensus 246 ~~~i~~~p 253 (330)
T PRK09473 246 ARDVFYQP 253 (330)
T ss_pred HHHHHhCC
Confidence 99998753
No 464
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-40 Score=349.49 Aligned_cols=201 Identities=30% Similarity=0.509 Sum_probs=168.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 4689999999742 1 39999999999999999999999999999999999999999999999876654 346799
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCC-CC-----HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 180 LVNQEPALFAT-TILENILYGKPE-AT-----MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
|++|++.+|+. |++||+.++... .. .+++.++ ++.+ |+.........+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVA---------LARV--GLAGLEKRLPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHH---------HHHc--CCHHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999999976 999999876321 11 1122222 3333 44444555667999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|+.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 38999999999999866 8999999999998754
No 465
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=358.20 Aligned_cols=218 Identities=31% Similarity=0.449 Sum_probs=181.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCC--CH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTL--QL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 171 (987)
.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4899999999973 3489999999999999999999999999999999999875 799999999998643 33
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCCC---CHH----HHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
...++.++|++|++.+|+.|++||+.++.... ... ++.++++..++. .++.......+..||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALW-------DEVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCc-------hhhhhHhhCCcccCCHHHH
Confidence 45677899999999999999999998753211 111 122222222211 1222345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767999999999998766 899999999999999999988
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 643
No 466
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=8.5e-41 Score=369.19 Aligned_cols=204 Identities=24% Similarity=0.404 Sum_probs=172.7
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchh-cHH
Q 001980 115 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TIL 193 (987)
Q Consensus 115 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~ 193 (987)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++|+||++.+++. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 358999999999999999999999999999999999999999999999999865 345567789999999999876 999
Q ss_pred HHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCh
Q 001980 194 ENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271 (987)
Q Consensus 194 eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~ 271 (987)
||+.+.... ....+..+ ...+.++.+ |+.........+||||||||++|||||+++|+++||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEE-----RAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 999874211 11111111 122344444 555556677789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 272 GSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 272 ~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+++.+++.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999885 48999999999999876 899999999999999999988653
No 467
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=7.2e-41 Score=355.18 Aligned_cols=205 Identities=26% Similarity=0.436 Sum_probs=169.1
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC---CCCceEEECCccCCCCCHHHHh
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD---PTAGKVMIDGKDIRRLNLKSLR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~l~~lR 820 (987)
+.|+||+|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67999999997542 2569999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cccEEEccccccccc-cHHHHhccCCC----CCCHHH-----HHH-HHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 821 LKIGLVQQEPALFAA-SIFDNIAYGKE----GATEAE-----VVE-AARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 821 ~~i~~VpQdp~lF~g-TIreNL~~~~~----~~sd~e-----i~~-al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
++++|+||++.+|.+ |++||+.++.. ....++ +.+ .++..++ +.........||||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLAL-----------TRIGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcc-----------hhhhcccccCcCHHHH
Confidence 999999999999987 99999986421 111111 111 2222222 2222334567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCc-hhh-hccCEEEEEeCCEEEEec
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRL-STI-RGVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl-~ti-~~~D~Iivl~~G~ive~G 963 (987)
||++|||||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||++ +.+ ..||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999875 478999999998 455 568999999999999875
No 468
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-41 Score=361.58 Aligned_cols=217 Identities=30% Similarity=0.506 Sum_probs=179.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCCC--HH
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKTLQ--LR 172 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~--~~ 172 (987)
-+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 358999999999999999999999999999999999986 47999999999886543 23
Q ss_pred HHhcceEEEcCCCCCchhcHHHHHhcCCC--CC--CHHHHHHHHHHHhHHHHHHhCCCCCc----ccccCCCCCCChHHH
Q 001980 173 WLRDQIGLVNQEPALFATTILENILYGKP--EA--TMAEVEAAASAANAHSFITLLPNGYS----TQVGERGVQLSGGQK 244 (987)
Q Consensus 173 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~g~~----t~~~~~g~~LSgGqk 244 (987)
.+++.++|++|++.+|+.|++||+.++.. .. ......+ ...+.++.+ |+. +.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDE-----IVEKSLTSV--GLWEELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHc--CCCchhhhHhhcChhhCCHHHH
Confidence 56778999999999998899999987521 11 1111111 111223333 332 345667889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+++|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 899999999999999999887
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
.+.
T Consensus 236 ~~~ 238 (251)
T PRK14244 236 FKN 238 (251)
T ss_pred hcC
Confidence 643
No 469
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-40 Score=357.90 Aligned_cols=219 Identities=29% Similarity=0.502 Sum_probs=180.4
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCEeCCCC--C
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--P---NAGHVLLDNVDIKTL--Q 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--~---~~G~i~~~g~~~~~~--~ 170 (987)
+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 45899999999973 348999999999999999999999999999999999986 4 689999999998643 3
Q ss_pred HHHHhcceEEEcCCCCCchh-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCCCc----ccccCCCCCCChH
Q 001980 171 LRWLRDQIGLVNQEPALFAT-TILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYS----TQVGERGVQLSGG 242 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~----t~~~~~g~~LSgG 242 (987)
...+++.++|++|++.+|+. |++||+.++... ...++..+. ..+.++.+ |++ ...+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEI-----VESSLKRV--ALWDEVKDRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHH-----HHHHHHHc--CCchhhhHHhhCCcCcCCHH
Confidence 45677889999999999875 999999875211 111111111 11222222 222 2345677899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChH
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 321 (987)
||||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999865 8999999999999999998
Q ss_pred HHHHh
Q 001980 322 ELIAK 326 (987)
Q Consensus 322 ~l~~~ 326 (987)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14256 233 KIFTT 237 (252)
T ss_pred HHHhC
Confidence 87643
No 470
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.8e-40 Score=360.46 Aligned_cols=224 Identities=27% Similarity=0.436 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCC------CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH-
Q 001980 744 EIELRHVDFAYPSR------PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL- 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~------~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l- 816 (987)
.|+++||+++|+.. .+.++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999631 02469999999999999999999999999999999999999999999999999988765
Q ss_pred --HHHhcccEEEccccc--cc-cccHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCC-ccCCCCCC
Q 001980 817 --KSLRLKIGLVQQEPA--LF-AASIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKT-PVGERGVQ 883 (987)
Q Consensus 817 --~~lR~~i~~VpQdp~--lF-~gTIreNL~~~~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt-~vge~G~~ 883 (987)
..+|+.++|+||++. ++ ..|+++|+.++.. ..+. +.+.+.++..+ +++ ........
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~ 151 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVD-----------LDDSVLDKRPPQ 151 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcC-----------CChhHhhCCCcc
Confidence 347889999999983 33 4789999864211 1111 12334444433 332 23445568
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEE
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIV 960 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv 960 (987)
||||||||++|||||+++|+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|+++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999998753 7899999999999975 8999999999999
Q ss_pred EecChhHHhcCCCchHHHH
Q 001980 961 EQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 961 e~Gt~~eLl~~~~g~f~~l 979 (987)
+.|+++++... ++.|..-
T Consensus 232 ~~g~~~~~~~~-~~~~~~~ 249 (268)
T PRK10419 232 ETQPVGDKLTF-SSPAGRV 249 (268)
T ss_pred eeCChhhccCC-CCHHHHH
Confidence 99999999865 5555443
No 471
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-40 Score=359.69 Aligned_cols=221 Identities=24% Similarity=0.377 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC--------ccEEEECCEeCCCCCH
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN--------AGHVLLDNVDIKTLQL 171 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~--------~G~i~~~g~~~~~~~~ 171 (987)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999964 35899999999999999999999999999999999999998 9999999999987777
Q ss_pred HHHhcceEEEcCCCC-CchhcHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 172 RWLRDQIGLVNQEPA-LFATTILENILYGKPEA-TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~-l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
..+++.++|++|++. +++.|++||+.++.... ...............+.++.+ |+.+..+....+||||||||++|
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA--GATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHH
Confidence 777778999999986 46779999998763110 000000000011122334444 67777788889999999999999
Q ss_pred HHHhc---------cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEe
Q 001980 250 ARAML---------KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVET 317 (987)
Q Consensus 250 ARal~---------~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~ 317 (987)
||||+ .+|++|||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999 59999999999999999999999999998753 7999999999999864 899999999999999
Q ss_pred cChHHHHH
Q 001980 318 GTHEELIA 325 (987)
Q Consensus 318 g~~~~l~~ 325 (987)
|+.+++..
T Consensus 237 g~~~~~~~ 244 (272)
T PRK13547 237 GAPADVLT 244 (272)
T ss_pred cCHHHHcC
Confidence 99988754
No 472
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-40 Score=357.59 Aligned_cols=202 Identities=30% Similarity=0.474 Sum_probs=172.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999963 3599999999999999999999999999999999999999999999999998653 34689
Q ss_pred EEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+|. .|+++|+.++.. ... ++++.++++..++.+.... ...+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999887 699999976421 112 2345666777766544332 335799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEe--CCEEEEecCh
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQ--DGRIVEQGSH 965 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~--~G~ive~Gt~ 965 (987)
|+++|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|+|++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999999863 37999999999998865 89999998 5999998764
No 473
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.5e-40 Score=349.53 Aligned_cols=204 Identities=31% Similarity=0.472 Sum_probs=175.3
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH---HHh
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~---~lR 820 (987)
++++|++++|++.. ..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|++||.++...+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 14699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cccEEEcccccccc-ccHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 821 LKIGLVQQEPALFA-ASIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 821 ~~i~~VpQdp~lF~-gTIreNL~~~~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+.++|+||+|.+|. .|+.+|+.++.. ..+. +.+.++++..++.++....| .+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999987 799999986431 1222 24556666666655554433 47999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEE
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRI 959 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~i 959 (987)
+|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999998763 7999999999998777999999999986
No 474
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.5e-40 Score=357.93 Aligned_cols=220 Identities=27% Similarity=0.399 Sum_probs=180.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCC-----C
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN---AGHVLLDNVDIKTL-----Q 170 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~-----~ 170 (987)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999974 35899999999999999999999999999999999999986 49999999988653 2
Q ss_pred HHHHhcceEEEcCCCCCchh-cHHHHHhcCCCCCCH--HH---HHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 171 LRWLRDQIGLVNQEPALFAT-TILENILYGKPEATM--AE---VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
...++++++|++|++.+|+. |++||+.++...... .. .........+.+.++.+ |+.......+.+||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence 34567789999999998875 999999876321100 00 00000111223344444 555556677789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 321 (987)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999885 37999999999998654 8999999999999999998
Q ss_pred HH
Q 001980 322 EL 323 (987)
Q Consensus 322 ~l 323 (987)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 86
No 475
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-40 Score=350.55 Aligned_cols=214 Identities=29% Similarity=0.462 Sum_probs=176.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|+.. ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +..++
T Consensus 2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 6899999999732 2489999999999999999999999999999999999999999999998765442 45799
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 180 LVNQEPALFAT-TILENILYGKPEA-TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|++|++.++++ |+.||+.++.... ..... ....+.+.++.+ |++..+......||||||||++||||++++|
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p 148 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAA----QREKLHAIARQM--GIEDLLARLPGQLSGGQRQRVALARCLVREQ 148 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHH----HHHHHHHHHHHc--CcHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999876 9999998753111 10000 011112233333 4544556666799999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 ~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 149 PILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999998743 7899999999999865 899999999999999999888654
No 476
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-40 Score=361.46 Aligned_cols=221 Identities=29% Similarity=0.437 Sum_probs=180.3
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCC--C
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKTL--Q 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~--~ 170 (987)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 45899999999974 348999999999999999999999999999999999864 4999999999988643 2
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPE--A-TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkq 245 (987)
...++++++|++|++.+|+.|++||+.++... . ......+.+ .+.++.+ ..++.......+..|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIV-----EKSLRKAALWDEVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHH-----HHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence 34567789999999999988999999975321 1 111111111 1112222 011123446677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
|++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999999865 8999999999999999999886
Q ss_pred Hh
Q 001980 325 AK 326 (987)
Q Consensus 325 ~~ 326 (987)
+.
T Consensus 270 ~~ 271 (286)
T PRK14275 270 TN 271 (286)
T ss_pred hC
Confidence 53
No 477
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=359.10 Aligned_cols=220 Identities=30% Similarity=0.450 Sum_probs=179.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 171 (987)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999974 3489999999999999999999999999999999999974 79999999998853 345
Q ss_pred HHHhcceEEEcCCCCCchh-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHH
Q 001980 172 RWLRDQIGLVNQEPALFAT-TILENILYGKPE---ATMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkq 245 (987)
..+++.++|++|++.+|+. |++||+.++... .......+. +.+.++.+ ..+........+.+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL-----VEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 5677889999999999875 999999865311 111111111 11222222 001123456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEe------CCEEEEec
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQ------QGQVVETG 318 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~------~G~i~~~g 318 (987)
|++|||||+.+|+++||||||++||+.++..+.+.|.++.+++|+|++||+++.+.. ||+|++|+ +|+|++.|
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~ 235 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID 235 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecC
Confidence 999999999999999999999999999999999999988767999999999998864 89999997 89999999
Q ss_pred ChHHHHHh
Q 001980 319 THEELIAK 326 (987)
Q Consensus 319 ~~~~l~~~ 326 (987)
+++++...
T Consensus 236 ~~~~~~~~ 243 (258)
T PRK14241 236 DTEKIFSN 243 (258)
T ss_pred CHHHHHhC
Confidence 99988653
No 478
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=356.82 Aligned_cols=218 Identities=29% Similarity=0.488 Sum_probs=180.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCC--CH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTL--QL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 171 (987)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999973 3589999999999999999999999999999999999984 899999999988653 23
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC---CCHHH----HHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE---ATMAE----VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
..+++.++|++|++.+++.|++||+.++... ...+. +.++++..++.+ .++...+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD-------EVKSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCc-------hhHHHHhCChhhcCHHHH
Confidence 4567789999999999989999999875311 11111 122222221111 112345677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+.+|+++||||||++||+.++..+.+.|.++.+++|+|++||+++.+.. +|++++|++|++++.|+.+++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999988778999999999997654 899999999999999999887
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14262 233 VER 235 (250)
T ss_pred HhC
Confidence 653
No 479
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=358.68 Aligned_cols=217 Identities=32% Similarity=0.457 Sum_probs=180.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 171 (987)
.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 5899999999974 3489999999999999999999999999999999999985 48999999998854 344
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC---CCH----HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE---ATM----AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
..++.+|+|++|++.+|+.|++||+.++... ... +.+.++++..++.+. +.......+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQE-------VKDKLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-------hhhHhcCCcccCCHHHH
Confidence 5677889999999999999999999875211 011 122223332222111 12234667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEe-----CCEEEEec
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQ-----QGQVVETG 318 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~-----~G~i~~~g 318 (987)
||++|||||+++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999988777999999999999876 89999997 59999999
Q ss_pred ChHHHHH
Q 001980 319 THEELIA 325 (987)
Q Consensus 319 ~~~~l~~ 325 (987)
+++++.+
T Consensus 237 ~~~~~~~ 243 (259)
T PRK14260 237 VTTQIFS 243 (259)
T ss_pred CHHHHhc
Confidence 9998864
No 480
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-40 Score=357.12 Aligned_cols=220 Identities=29% Similarity=0.448 Sum_probs=179.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-----AGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~-----~G~i~~~g~~~~~--~~~ 171 (987)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999973 35899999999999999999999999999999999999874 8999999999864 334
Q ss_pred HHHhcceEEEcCCCCCchh-cHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHH
Q 001980 172 RWLRDQIGLVNQEPALFAT-TILENILYGKPE--A-TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkq 245 (987)
..+++.++|++|++.+|+. |++||+.++... . ..++..+.+. +.+..+ ..++.......+.+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE-----RSLRGAALWDEVKDRLKTPATGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHHcCcchhhhhhhcCCcccCCHHHHH
Confidence 5667889999999999875 999999865321 1 1222222111 111111 111222335567789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
|++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988768999999999999875 8999999999999999999886
Q ss_pred Hh
Q 001980 325 AK 326 (987)
Q Consensus 325 ~~ 326 (987)
..
T Consensus 236 ~~ 237 (252)
T PRK14272 236 TN 237 (252)
T ss_pred hC
Confidence 54
No 481
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.6e-40 Score=355.56 Aligned_cols=214 Identities=26% Similarity=0.353 Sum_probs=175.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEeCCCCCHHHH-hc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY--DPNAGHVLLDNVDIKTLQLRWL-RD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~-~~ 176 (987)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999973 35899999999999999999999999999999999994 7999999999999987776554 44
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCCCC---------CHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCC-CCChHHH
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKPEA---------TMAEVEAAASAANAHSFITLLPNGYST-QVGERGV-QLSGGQK 244 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~-~LSgGqk 244 (987)
.++|++|++.++++ |++||+.+..... +..+.. ..+.+.++.+ |+.. ....... +||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 59999999999876 9999997642110 111111 1122334443 4442 2344444 5999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc--CCEEEEEeCCEEEEecChH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN--VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~~ 321 (987)
||++|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999999885 47999999999999875 7999999999999999887
Q ss_pred HH
Q 001980 322 EL 323 (987)
Q Consensus 322 ~l 323 (987)
++
T Consensus 231 ~~ 232 (243)
T TIGR01978 231 LA 232 (243)
T ss_pred Hh
Confidence 54
No 482
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.7e-40 Score=356.90 Aligned_cols=218 Identities=28% Similarity=0.433 Sum_probs=181.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe-----CCCCCHHH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD-----IKTLQLRW 173 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~-----~~~~~~~~ 173 (987)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 358999999999999999999999999999999999999999999999998 76665543
Q ss_pred ----HhcceEEEcCCCC--Cch-hcHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChH
Q 001980 174 ----LRDQIGLVNQEPA--LFA-TTILENILYGK---PEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGG 242 (987)
Q Consensus 174 ----~~~~i~~v~Q~~~--l~~-~tv~eni~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgG 242 (987)
+++.++|++|++. ++. .|+.+|+.+.. ......+... ...+.++.+ |+. +..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 443 48899986421 0111112111 223455665 454 4677888999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecC
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT 319 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 319 (987)
||||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+ |.|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 7899999999999975 89999999999999999
Q ss_pred hHHHHHh
Q 001980 320 HEELIAK 326 (987)
Q Consensus 320 ~~~l~~~ 326 (987)
++++..+
T Consensus 236 ~~~~~~~ 242 (258)
T PRK11701 236 TDQVLDD 242 (258)
T ss_pred HHHHhcC
Confidence 9887643
No 483
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=9.4e-40 Score=353.01 Aligned_cols=224 Identities=25% Similarity=0.411 Sum_probs=182.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc-----CCCCCHHH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD-----IRRLNLKS 818 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~d-----i~~i~l~~ 818 (987)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999988 77766553
Q ss_pred ----HhcccEEEcccccc---ccccHHHHhccC-----CCC--CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 819 ----LRLKIGLVQQEPAL---FAASIFDNIAYG-----KEG--ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 819 ----lR~~i~~VpQdp~l---F~gTIreNL~~~-----~~~--~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
+++.++|+||++.+ +..|+.+|+... ... ..++++.+.++..++.+ +........|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~L 149 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAF 149 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhc
Confidence 34679999999852 345888887431 111 11233344444444321 2334455689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEE
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVE 961 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive 961 (987)
|||||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. .+.|+|+|||+++.+.. ||++++|++|++++
T Consensus 150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999864 37899999999999985 89999999999999
Q ss_pred ecChhHHhcCCCchHHHHH
Q 001980 962 QGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 962 ~Gt~~eLl~~~~g~f~~l~ 980 (987)
.|+++++..++...|.+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~ 248 (253)
T TIGR02323 230 SGLTDQVLDDPQHPYTQLL 248 (253)
T ss_pred ECCHHHHhcCCCCHHHHHH
Confidence 9999999876555565543
No 484
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=5.4e-40 Score=356.81 Aligned_cols=221 Identities=26% Similarity=0.437 Sum_probs=179.6
Q ss_pred cEEEEeEEEECCCC------CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH
Q 001980 99 NIEFKNVTFSYPSR------PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR 172 (987)
Q Consensus 99 ~i~~~~~~~~y~~~------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~ 172 (987)
.|+++|++++|+.. ...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124589999999999999999999999999999999999999999999999998765555
Q ss_pred HHhcceEEEcCCCC--Cchh-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHH
Q 001980 173 WLRDQIGLVNQEPA--LFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQ 245 (987)
Q Consensus 173 ~~~~~i~~v~Q~~~--l~~~-tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkq 245 (987)
..++.++|++|++. +++. |+.+|+.+... .....+..+ .+.+.++.+ |++ ........+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~~q 156 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREK-----QIIETLRQV--GLLPDHASYYPHMLAPGQKQ 156 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CCChHHHhcCchhcCHHHHH
Confidence 56678999999985 4444 99999875321 111111111 112233333 442 2234456789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEE 322 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 322 (987)
|++|||||+.+|+++||||||++||+.+++.+.+.|.++. .|+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 236 (267)
T PRK15112 157 RLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTAD 236 (267)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999999999885 38899999999999886 89999999999999999999
Q ss_pred HHHh
Q 001980 323 LIAK 326 (987)
Q Consensus 323 l~~~ 326 (987)
+...
T Consensus 237 ~~~~ 240 (267)
T PRK15112 237 VLAS 240 (267)
T ss_pred HhcC
Confidence 8764
No 485
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-40 Score=357.02 Aligned_cols=219 Identities=32% Similarity=0.457 Sum_probs=181.3
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CC
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQ 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 170 (987)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999974 3489999999999999999999999999999999999863 69999999998854 33
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCC-----HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPEAT-----MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
...++++|+|++|++.+|+.|+.||+.++..... .+.+.++++.+++.+ ++.......+.+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWE-------EVKDKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccch-------hhHHHhcCCcccCCHHHHH
Confidence 4456788999999999998899999987632111 111222222222211 1223455677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEe---------CCEEE
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQ---------QGQVV 315 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~---------~G~i~ 315 (987)
|++|||||+.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999998777899999999998865 89999997 89999
Q ss_pred EecChHHHHHh
Q 001980 316 ETGTHEELIAK 326 (987)
Q Consensus 316 ~~g~~~~l~~~ 326 (987)
+.|+.+++...
T Consensus 249 ~~g~~~~~~~~ 259 (274)
T PRK14265 249 EFSPTEQMFGS 259 (274)
T ss_pred EeCCHHHHHhC
Confidence 99999998653
No 486
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-41 Score=316.50 Aligned_cols=217 Identities=32% Similarity=0.541 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC---------
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL--------- 169 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~--------- 169 (987)
.++++|+.++|+... +|++|||+.++|+.+.|+|.|||||||+|+||.=+-.|+.|+|.++|++++-.
T Consensus 6 ~l~v~dlHK~~G~~e---VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEHE---VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccch---hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 589999999998543 89999999999999999999999999999999999999999999999987421
Q ss_pred -C---HHHHhcceEEEcCCCCCchh-cHHHHHhcCCCC---CC-HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCC
Q 001980 170 -Q---LRWLRDQIGLVNQEPALFAT-TILENILYGKPE---AT-MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240 (987)
Q Consensus 170 -~---~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LS 240 (987)
+ .+.+|.+.++|+|+..|++- ||.||+.-+.-. .+ .+.++++ ..++... |+.......+..||
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~A------e~~L~kV--Gi~ek~~~YP~~LS 154 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERA------EKYLAKV--GIAEKADAYPAHLS 154 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHH------HHHHHHh--CchhhhhcCccccC
Confidence 2 34678899999999999965 999999753210 11 1222221 2233333 66666677788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 241 gGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|||+||+||||||..+|+++|+|||||+|||+-.-++.+.+.++. .|+|.++|||.+.+.+. ..+|+.+.+|.|-|+|
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccC
Confidence 999999999999999999999999999999999999999999886 59999999999999998 5999999999999999
Q ss_pred ChHHHHHh
Q 001980 319 THEELIAK 326 (987)
Q Consensus 319 ~~~~l~~~ 326 (987)
++++++.+
T Consensus 235 ~P~qvf~n 242 (256)
T COG4598 235 PPEQVFGN 242 (256)
T ss_pred ChHHHhcC
Confidence 99999764
No 487
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-40 Score=355.22 Aligned_cols=206 Identities=28% Similarity=0.429 Sum_probs=172.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 689999999974 3589999999999999999999999999999999999999999999999987642 23689
Q ss_pred EEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.+++ .|++||+.++... ....+.. ..+.+.++.+ |+.......+.+||||||||++|||||+.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRL-----EIAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999887 4999999875321 1111111 1123344444 555556677889999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEe--CCEEEEecCh
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQ--QGQVVETGTH 320 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~--~G~i~~~g~~ 320 (987)
|++|||||||++||+.+++.+.+.|.++. .|+|+|++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999873 38999999999998865 89999998 5999988754
No 488
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=4e-40 Score=351.74 Aligned_cols=214 Identities=33% Similarity=0.495 Sum_probs=180.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ .++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999974 348999999999999999999999999999999999999999999999999876543 356899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|+||+|.+|++ |++||+.++... ....... ..+.+.++.+ |+.........+|||||+||++|||||+++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 999999876431 1111111 1223445554 444445566779999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999999998753 7999999999998766 89999999999999999988764
No 489
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.6e-40 Score=345.69 Aligned_cols=202 Identities=33% Similarity=0.502 Sum_probs=169.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|+. .++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+ .+++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999962 468999999999999999999999999999999999999999999999986543 3567899
Q ss_pred EEcCCCCCchh-cHHHHHhcCC-CCC--C---HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 180 LVNQEPALFAT-TILENILYGK-PEA--T---MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~-~~~--~---~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
|++|+|.+|.. |++||+.++. +.. . .+++.+++ +.+ |+.........+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA---------QQV--GIADYLDRLPEQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHH---------HHc--CcHHHhhCCcccCCHHHHHHHHHHHH
Confidence 99999999875 9999998642 111 1 11222233 333 44444555667999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecC
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT 319 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 319 (987)
|+.+|+++||||||++||+.+++.+.+.|.++. .+.|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999875 37899999999998765 89999999999998874
No 490
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.5e-41 Score=313.61 Aligned_cols=195 Identities=32% Similarity=0.501 Sum_probs=167.4
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHH
Q 001980 114 DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTIL 193 (987)
Q Consensus 114 ~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 193 (987)
+.++|+++||++.+||+++|+||||||||||+|.++-+.+|++|++++.|++++.++++.+|++|+||.|.|.||.+||+
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHH
Q 001980 194 ENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 273 (987)
Q Consensus 194 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~ 273 (987)
||+.|...-. ..+.... ...+++..+. -.++.+..+..+||||||||+||+|-|.--|+|||||||||+||+.+
T Consensus 95 DNlifP~~~r-~rr~dr~----aa~~llar~~-l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~n 168 (223)
T COG4619 95 DNLIFPWQIR-NRRPDRA----AALDLLARFA-LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168 (223)
T ss_pred hccccchHHh-ccCCChH----HHHHHHHHcC-CchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhh
Confidence 9999863200 0001111 1123344331 12356778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh--CCCeEEEEcCCCCc-cccCCEEEEEeCCEE
Q 001980 274 ESIVQEALDRLM--VGRTTVVVAHRLST-IRNVDTVAVIQQGQV 314 (987)
Q Consensus 274 ~~~i~~~l~~~~--~~~tvi~vtH~~~~-~~~~d~i~~l~~G~i 314 (987)
++.|.+.|.++- ++..+++|||+.+. ++.+|+++-+..|++
T Consensus 169 kr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 169 KRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred HHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 999999998874 47899999999998 778999999999876
No 491
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=4.7e-40 Score=348.37 Aligned_cols=205 Identities=27% Similarity=0.457 Sum_probs=178.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
++++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999963 36999999999999999999999999999999999999999999999999876422 35799
Q ss_pred EEcccccccc-ccHHHHhccCC--CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 825 LVQQEPALFA-ASIFDNIAYGK--EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~--~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
|+||++.+|. .|+++|+.++. ....++++.++++..++.+.... ....||||||||++||||++++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 69999997532 12346678888888888765433 2346999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhH
Q 001980 902 PAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~e 967 (987)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|++.+
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999875 4789999999999985 589999999999999999875
No 492
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-40 Score=367.19 Aligned_cols=227 Identities=24% Similarity=0.376 Sum_probs=182.4
Q ss_pred cEEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCEeCCCCCHHH
Q 001980 99 NIEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD----PNAGHVLLDNVDIKTLQLRW 173 (987)
Q Consensus 99 ~i~~~~~~~~y~~~-~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 173 (987)
.|+++|++++|+.. ....+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..++...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37899999999632 13458999999999999999999999999999999999986 58999999999998877654
Q ss_pred H----hcceEEEcCCCC--Cch-hcHHHHHhcCCC---C-----CCHHHHHHHHHHHhHHHHHHhCCCCCc---ccccCC
Q 001980 174 L----RDQIGLVNQEPA--LFA-TTILENILYGKP---E-----ATMAEVEAAASAANAHSFITLLPNGYS---TQVGER 235 (987)
Q Consensus 174 ~----~~~i~~v~Q~~~--l~~-~tv~eni~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~---t~~~~~ 235 (987)
+ ++.|+||+|+|. +.+ .||.+|+..... . ....+.. ..+.+.++.+ |+. ......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~~~--gL~~~~~~~~~~ 155 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRK-----RRAIELLHRV--GIKDHKDAMRSF 155 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHH-----HHHHHHHHHC--CCCChHHHHhCC
Confidence 3 247999999996 344 399999864210 0 0001111 1122344444 443 234667
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCC
Q 001980 236 GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQG 312 (987)
Q Consensus 236 g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G 312 (987)
+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 789999999999999999999999999999999999999999999998853 8999999999999965 8999999999
Q ss_pred EEEEecChHHHHHhh-hhHHH
Q 001980 313 QVVETGTHEELIAKA-GAYAS 332 (987)
Q Consensus 313 ~i~~~g~~~~l~~~~-~~~~~ 332 (987)
+|++.|+.+++.+.. ..|.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHH
Confidence 999999999987653 33443
No 493
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-40 Score=332.78 Aligned_cols=171 Identities=56% Similarity=0.918 Sum_probs=161.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++. ..++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999643 225899999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
|+||++.+|+.|++||+ ||+|||||++||||++++|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCE
Q 001980 905 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGR 958 (987)
Q Consensus 905 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ 958 (987)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999998877899999999999998899999999985
No 494
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-40 Score=357.28 Aligned_cols=218 Identities=29% Similarity=0.471 Sum_probs=181.9
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC----
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT---- 168 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~---- 168 (987)
+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 15 ~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 15 QKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred ceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 45999999999974 3589999999999999999999999999999999999875 79999999987742
Q ss_pred CCHHHHhcceEEEcCCCCCchhcHHHHHhcCCC--CCC-----HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCCh
Q 001980 169 LQLRWLRDQIGLVNQEPALFATTILENILYGKP--EAT-----MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSG 241 (987)
Q Consensus 169 ~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg 241 (987)
.+...+++.++|++|++.+|+.|++||+.++.. ... .+++..+++.+++. .++.+..++.+.+|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALW-------DEVKDRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCc-------hhhhHHHhCCcccCCH
Confidence 334567788999999999998899999987531 111 12222222222211 1333456677889999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecCh
Q 001980 242 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTH 320 (987)
Q Consensus 242 GqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 320 (987)
|||||++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+.
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988767899999999999865 899999999999999999
Q ss_pred HHHHH
Q 001980 321 EELIA 325 (987)
Q Consensus 321 ~~l~~ 325 (987)
+++..
T Consensus 245 ~~~~~ 249 (265)
T PRK14252 245 DTIFI 249 (265)
T ss_pred HHHHh
Confidence 88764
No 495
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-40 Score=341.44 Aligned_cols=191 Identities=20% Similarity=0.360 Sum_probs=163.1
Q ss_pred cEEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC---CCCceEEECCccCCCCCHHHH
Q 001980 744 EIELRHVDFAYPSR-PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD---PTAGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~-~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~l~~l 819 (987)
.+.++||+|.|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999753 34579999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hcccEEEcccccccc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHH
Q 001980 820 RLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898 (987)
Q Consensus 820 R~~i~~VpQdp~lF~-gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAl 898 (987)
|++++|+||++.+|. .|+++||.++.. . . .+ +....||+|||||++|||||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~------~----~--------------~~----~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR------C----K--------------GN----EFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh------h----c--------------cc----cchhhCCHHHHHHHHHHHHH
Confidence 889999999998886 599999975421 0 0 22 23346999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEe-cCchhh-hccCEEEEEeCCEEEEec
Q 001980 899 LKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVA-HRLSTI-RGVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 899 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~Ia-HRl~ti-~~~D~Iivl~~G~ive~G 963 (987)
+++|++|||||||++||+++.+.+.+.|++..+ ++|+|+++ |+++.+ ..||+|++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998754 56766665 455665 558999999999999865
No 496
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-40 Score=333.74 Aligned_cols=170 Identities=35% Similarity=0.649 Sum_probs=157.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
++++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999963 35999999999999999999999999999999999999999999999999998766 67789999
Q ss_pred EEccccccccc-cHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 903 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ 903 (987)
|+||++.+|.+ |+++|+. ||||||||++|||||+++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999998886 9999983 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEE
Q 001980 904 ILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRI 959 (987)
Q Consensus 904 ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~i 959 (987)
+|||||||++||+.+...+.+.|++.. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999875 4689999999999887 5899999999974
No 497
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.5e-40 Score=349.93 Aligned_cols=214 Identities=24% Similarity=0.391 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEeCCCCCHHHHh
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD---PNAGHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 175 (987)
+.++|++++|++.+ ..++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67899999997542 3569999999999999999999999999999999999999 99999999999875 24567
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHH-HHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHS-FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+.++|++|++.+|+. |++||+.++...................+ .+..+ ++.....+...+||||||||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 789999999999987 99999987522110000000000001111 23322 444445667789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCC-cc-ccCCEEEEEeCCEEEEec
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLS-TI-RNVDTVAVIQQGQVVETG 318 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~i~~l~~G~i~~~g 318 (987)
+++|+++||||||++||+.++..+.+.+.++. +++|+|++||++. .+ ..||++++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998875 4789999999983 55 458999999999998765
No 498
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=5.4e-40 Score=369.64 Aligned_cols=211 Identities=32% Similarity=0.489 Sum_probs=178.5
Q ss_pred eEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHHhcceE
Q 001980 104 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ----LRWLRDQIG 179 (987)
Q Consensus 104 ~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~~~~i~ 179 (987)
|++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....+++++
T Consensus 4 ~l~~~~~~~----~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF----SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE----EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 899999632 24 999999999999999999999999999999999999999999999986532 234567899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 180 LVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
|++|++.+|+. |++||+.++.......+. ...+.+.++.+ |++......+.+||||||||++|||||+.+|+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999976 999999987432211111 11123344444 66667778888999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 9999999999999999999999998753 7999999999998865 899999999999999999998764
No 499
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-40 Score=344.74 Aligned_cols=228 Identities=30% Similarity=0.518 Sum_probs=186.8
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-C----CCceEEECCccCCCCCHHH
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-P----TAGKVMIDGKDIRRLNLKS 818 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-p----~~G~I~idG~di~~i~l~~ 818 (987)
++++|++..|.... ...+++||||+|++||.+||||.|||||||+.++++|+.+ | .+|+|.++|.|+-+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999996532 2469999999999999999999999999999999999998 4 5799999999999999876
Q ss_pred Hh----cccEEEccccc-cccc--cHHH----HhccCCCCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 001980 819 LR----LKIGLVQQEPA-LFAA--SIFD----NIAYGKEGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883 (987)
Q Consensus 819 lR----~~i~~VpQdp~-lF~g--TIre----NL~~~~~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 883 (987)
+| +.|++|||||. -|+- ||.+ -+..-....+ .+...+.++.+++.+--.. +..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~--------~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERR--------LKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHH--------HhhCCcc
Confidence 43 47999999985 2332 3333 3322111001 3357788888888753111 1122357
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEE
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIV 960 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv 960 (987)
||||||||+.||-||+.+|++||.||||+|||..++++|.+.|++..+ +.|+|+|||++..+.. ||||+||.+|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999998874 8999999999998865 8999999999999
Q ss_pred EecChhHHhcCCCchHHHHH
Q 001980 961 EQGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 961 e~Gt~~eLl~~~~g~f~~l~ 980 (987)
|.|+.++++.+|.-.|.+..
T Consensus 234 E~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999999999988887654
No 500
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-40 Score=354.15 Aligned_cols=218 Identities=29% Similarity=0.522 Sum_probs=181.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCC--CH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKTL--QL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~--~~ 171 (987)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999973 358999999999999999999999999999999999864 4899999999998653 34
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C-CHH----HHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE--A-TMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~-~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
..++++++|+||++++|+.|++||+.++... . ..+ ++.+.++.+++.+.+ ....++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEV-------KDKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhH-------HHHHhCCcccCCHHHH
Confidence 5677889999999999989999999875321 1 111 223333333332222 1234567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+++|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. +|++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998876 799999999999999999988
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 543
Done!