Query 001980
Match_columns 987
No_of_seqs 603 out of 4337
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 07:16:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 3E-169 1E-173 1635.0 101.1 978 4-985 320-1318(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 7E-148 2E-152 1432.1 93.3 977 4-985 292-1272(1284)
3 4f4c_A Multidrug resistance pr 100.0 4.2E-93 1.4E-97 923.1 73.0 580 402-984 56-654 (1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 2.3E-86 7.8E-91 796.2 69.6 569 409-985 12-580 (587)
5 3qf4_B Uncharacterized ABC tra 100.0 5.6E-86 1.9E-90 795.4 64.0 571 405-985 22-592 (598)
6 4a82_A Cystic fibrosis transme 100.0 1.4E-85 4.6E-90 789.8 66.7 572 408-984 2-577 (578)
7 2yl4_A ATP-binding cassette SU 100.0 5.9E-84 2E-88 778.9 74.5 575 408-985 7-585 (595)
8 3g5u_A MCG1178, multidrug resi 100.0 4.7E-86 1.6E-90 855.0 59.2 577 405-984 32-626 (1284)
9 3b5x_A Lipid A export ATP-bind 100.0 1.7E-83 5.9E-88 772.9 76.1 568 407-984 12-580 (582)
10 3b60_A Lipid A export ATP-bind 100.0 2.4E-83 8.1E-88 771.7 72.0 569 406-984 11-580 (582)
11 3bk7_A ABC transporter ATP-bin 100.0 3.5E-68 1.2E-72 634.6 24.8 199 744-970 357-563 (607)
12 2iw3_A Elongation factor 3A; a 100.0 3.2E-66 1.1E-70 634.6 41.8 197 98-325 434-635 (986)
13 1yqt_A RNAse L inhibitor; ATP- 100.0 8E-68 2.8E-72 626.1 23.2 199 744-970 287-493 (538)
14 3ux8_A Excinuclease ABC, A sub 100.0 1.4E-65 4.7E-70 627.8 36.3 201 115-324 31-297 (670)
15 3nh6_A ATP-binding cassette SU 100.0 1.9E-65 6.5E-70 559.6 27.1 277 705-985 15-291 (306)
16 3ozx_A RNAse L inhibitor; ATP 100.0 4.6E-65 1.6E-69 600.2 28.1 199 744-969 269-476 (538)
17 3j16_B RLI1P; ribosome recycli 100.0 5.3E-64 1.8E-68 597.0 25.7 198 748-971 350-560 (608)
18 4a82_A Cystic fibrosis transme 100.0 3.1E-61 1.1E-65 578.3 38.9 330 5-336 246-575 (578)
19 3qf4_A ABC transporter, ATP-bi 100.0 5.3E-61 1.8E-65 576.3 40.7 330 6-337 249-578 (587)
20 3qf4_B Uncharacterized ABC tra 100.0 1.4E-60 4.7E-65 574.5 32.2 331 4-338 261-591 (598)
21 3b5x_A Lipid A export ATP-bind 100.0 3E-59 1E-63 562.1 41.2 329 5-337 250-579 (582)
22 3b60_A Lipid A export ATP-bind 100.0 2.8E-59 9.5E-64 562.4 40.1 329 5-337 250-579 (582)
23 2yl4_A ATP-binding cassette SU 100.0 2.7E-59 9.1E-64 564.0 38.7 331 6-337 248-583 (595)
24 3nh6_A ATP-binding cassette SU 100.0 6.9E-60 2.4E-64 515.7 27.9 277 59-338 14-290 (306)
25 2ff7_A Alpha-hemolysin translo 100.0 3.6E-55 1.2E-59 467.4 31.8 240 743-983 6-245 (247)
26 2ghi_A Transport protein; mult 100.0 7.5E-54 2.6E-58 460.9 29.0 241 743-985 16-256 (260)
27 2ixe_A Antigen peptide transpo 100.0 2.8E-53 9.6E-58 458.8 28.1 241 742-983 14-257 (271)
28 1mv5_A LMRA, multidrug resista 100.0 7.3E-54 2.5E-58 457.3 21.1 236 745-983 2-238 (243)
29 2vf7_A UVRA2, excinuclease ABC 100.0 1.1E-52 3.7E-57 511.7 31.5 214 743-974 501-831 (842)
30 2ff7_A Alpha-hemolysin translo 100.0 7.1E-52 2.4E-56 442.0 31.6 237 98-335 6-243 (247)
31 3gd7_A Fusion complex of cysti 100.0 4.4E-52 1.5E-56 468.1 27.0 238 739-979 14-251 (390)
32 3pih_A Uvrabc system protein A 100.0 3.5E-51 1.2E-55 502.4 35.0 219 743-979 588-911 (916)
33 2ghi_A Transport protein; mult 100.0 3.9E-51 1.3E-55 439.7 30.2 239 98-337 16-254 (260)
34 2ixe_A Antigen peptide transpo 100.0 7E-51 2.4E-55 440.1 28.3 238 98-335 15-255 (271)
35 1mv5_A LMRA, multidrug resista 100.0 2.9E-51 1E-55 437.2 19.5 233 100-334 2-235 (243)
36 2cbz_A Multidrug resistance-as 100.0 6.2E-50 2.1E-54 424.6 24.1 226 744-985 3-231 (237)
37 2pze_A Cystic fibrosis transme 100.0 2.3E-49 7.9E-54 418.3 26.5 222 743-980 5-227 (229)
38 2cbz_A Multidrug resistance-as 100.0 2.4E-48 8.3E-53 412.4 25.8 223 99-336 3-228 (237)
39 3tui_C Methionine import ATP-b 100.0 1.2E-48 4.1E-53 433.2 24.2 226 743-979 23-262 (366)
40 3gd7_A Fusion complex of cysti 100.0 2.7E-48 9.4E-53 437.2 25.8 228 97-327 17-244 (390)
41 2pze_A Cystic fibrosis transme 100.0 3.4E-48 1.1E-52 409.4 24.8 220 98-332 5-225 (229)
42 2r6f_A Excinuclease ABC subuni 100.0 5.8E-48 2E-52 468.6 30.0 211 744-973 629-945 (972)
43 3gfo_A Cobalt import ATP-bindi 100.0 4.3E-48 1.5E-52 417.5 22.7 215 744-971 7-234 (275)
44 3tif_A Uncharacterized ABC tra 100.0 3.4E-48 1.2E-52 410.7 20.1 215 745-969 2-233 (235)
45 3gfo_A Cobalt import ATP-bindi 100.0 1.8E-47 6.2E-52 412.6 24.0 221 99-328 7-236 (275)
46 3tui_C Methionine import ATP-b 100.0 1.4E-47 5E-52 424.6 23.2 224 97-327 22-255 (366)
47 2ygr_A Uvrabc system protein A 100.0 2.7E-46 9.3E-51 455.8 36.0 211 744-973 647-963 (993)
48 3tif_A Uncharacterized ABC tra 100.0 7.4E-48 2.5E-52 408.1 19.0 217 100-323 2-232 (235)
49 2olj_A Amino acid ABC transpor 100.0 7.7E-47 2.6E-51 405.4 25.9 220 744-977 24-255 (263)
50 1ji0_A ABC transporter; ATP bi 100.0 5.4E-47 1.8E-51 403.2 24.3 215 744-971 6-229 (240)
51 3fvq_A Fe(3+) IONS import ATP- 100.0 9.9E-47 3.4E-51 418.1 25.7 223 744-980 4-238 (359)
52 4g1u_C Hemin import ATP-bindin 100.0 9E-47 3.1E-51 406.4 24.6 214 744-971 11-238 (266)
53 3rlf_A Maltose/maltodextrin im 100.0 9.6E-47 3.3E-51 420.9 23.5 221 744-980 3-233 (381)
54 1ji0_A ABC transporter; ATP bi 100.0 1.4E-46 4.9E-51 399.8 23.7 219 99-326 6-229 (240)
55 1vpl_A ABC transporter, ATP-bi 100.0 2.2E-46 7.5E-51 400.7 23.2 213 743-970 14-235 (256)
56 3fvq_A Fe(3+) IONS import ATP- 100.0 2E-46 6.7E-51 415.7 23.5 219 99-327 4-230 (359)
57 1b0u_A Histidine permease; ABC 100.0 3.9E-46 1.3E-50 401.3 25.0 219 744-976 6-248 (262)
58 2yz2_A Putative ABC transporte 100.0 6.2E-46 2.1E-50 400.9 24.4 213 745-971 3-228 (266)
59 4g1u_C Hemin import ATP-bindin 100.0 3.6E-46 1.2E-50 401.7 22.4 214 99-326 11-238 (266)
60 2olj_A Amino acid ABC transpor 100.0 7.8E-46 2.7E-50 397.6 24.9 218 99-326 24-249 (263)
61 1g6h_A High-affinity branched- 100.0 9.9E-46 3.4E-50 397.6 25.2 214 99-322 7-239 (257)
62 2bbs_A Cystic fibrosis transme 100.0 4.4E-46 1.5E-50 405.0 22.5 217 742-979 38-255 (290)
63 3rlf_A Maltose/maltodextrin im 100.0 3.1E-46 1.1E-50 416.8 21.8 217 99-327 3-225 (381)
64 2yyz_A Sugar ABC transporter, 100.0 1.1E-45 3.8E-50 411.4 26.2 219 744-978 3-231 (359)
65 2pcj_A ABC transporter, lipopr 100.0 5.8E-46 2E-50 390.9 22.2 208 744-965 4-223 (224)
66 1g6h_A High-affinity branched- 100.0 8.6E-46 2.9E-50 398.1 23.9 210 744-967 7-239 (257)
67 1z47_A CYSA, putative ABC-tran 100.0 8.3E-46 2.9E-50 411.3 23.8 221 743-978 13-243 (355)
68 2it1_A 362AA long hypothetical 100.0 7.2E-46 2.5E-50 413.4 22.9 219 744-978 3-231 (362)
69 2onk_A Molybdate/tungstate ABC 100.0 8E-46 2.7E-50 392.8 22.0 209 745-972 2-218 (240)
70 2ihy_A ABC transporter, ATP-bi 100.0 6.7E-46 2.3E-50 402.1 21.8 214 744-971 21-253 (279)
71 2pcj_A ABC transporter, lipopr 100.0 1E-45 3.4E-50 389.1 21.6 211 99-319 4-222 (224)
72 1v43_A Sugar-binding transport 100.0 2.6E-45 8.9E-50 410.4 26.2 219 744-978 11-239 (372)
73 1vpl_A ABC transporter, ATP-bi 100.0 1.6E-45 5.5E-50 394.0 23.1 216 99-325 15-235 (256)
74 3d31_A Sulfate/molybdate ABC t 100.0 2E-45 6.9E-50 408.2 23.7 217 745-978 2-225 (348)
75 1oxx_K GLCV, glucose, ABC tran 100.0 1.2E-45 4.1E-50 411.8 21.7 221 744-978 3-238 (353)
76 2qi9_C Vitamin B12 import ATP- 100.0 3E-45 1E-49 390.2 23.8 208 744-970 4-222 (249)
77 1b0u_A Histidine permease; ABC 100.0 2.6E-45 9E-50 394.8 23.4 218 99-326 6-243 (262)
78 2yyz_A Sugar ABC transporter, 100.0 3.2E-45 1.1E-49 407.8 24.5 219 99-327 3-225 (359)
79 1z47_A CYSA, putative ABC-tran 100.0 3.1E-45 1.1E-49 406.7 21.9 218 98-327 13-237 (355)
80 2bbs_A Cystic fibrosis transme 100.0 4.5E-45 1.5E-49 397.0 22.7 211 98-328 39-250 (290)
81 2ihy_A ABC transporter, ATP-bi 100.0 2.3E-45 7.7E-50 397.9 20.2 217 98-325 20-252 (279)
82 2yz2_A Putative ABC transporte 100.0 7.5E-45 2.6E-49 392.5 24.0 213 100-326 3-228 (266)
83 2it1_A 362AA long hypothetical 100.0 3.1E-45 1E-49 408.4 21.5 216 99-326 3-224 (362)
84 2d2e_A SUFC protein; ABC-ATPas 100.0 2.1E-45 7.3E-50 393.3 19.1 210 744-967 3-230 (250)
85 1g29_1 MALK, maltose transport 100.0 4.6E-45 1.6E-49 409.5 22.4 219 744-978 3-237 (372)
86 1v43_A Sugar-binding transport 100.0 7.1E-45 2.4E-49 406.9 23.8 217 99-327 11-233 (372)
87 2onk_A Molybdate/tungstate ABC 100.0 9.4E-45 3.2E-49 384.6 22.9 212 100-326 2-217 (240)
88 3d31_A Sulfate/molybdate ABC t 100.0 8.8E-45 3E-49 403.1 23.0 211 100-327 2-219 (348)
89 1oxx_K GLCV, glucose, ABC tran 100.0 5.5E-45 1.9E-49 406.5 21.1 219 99-327 3-232 (353)
90 2qi9_C Vitamin B12 import ATP- 100.0 2.1E-44 7.3E-49 383.7 23.3 208 99-325 4-222 (249)
91 1g29_1 MALK, maltose transport 100.0 1E-44 3.5E-49 406.7 21.7 216 99-326 3-230 (372)
92 2zu0_C Probable ATP-dependent 100.0 1.4E-44 4.8E-49 390.2 20.7 215 744-970 20-254 (267)
93 2d2e_A SUFC protein; ABC-ATPas 100.0 2.4E-44 8.3E-49 385.1 19.7 214 99-322 3-230 (250)
94 2pjz_A Hypothetical protein ST 100.0 2.8E-44 9.7E-49 385.5 20.1 207 745-970 2-215 (263)
95 2zu0_C Probable ATP-dependent 100.0 3.3E-43 1.1E-47 379.5 26.6 216 99-324 20-253 (267)
96 2nq2_C Hypothetical ABC transp 100.0 6.7E-44 2.3E-48 381.5 20.9 208 744-980 4-225 (253)
97 2pjz_A Hypothetical protein ST 100.0 9.2E-44 3.1E-48 381.5 19.9 207 100-325 2-215 (263)
98 2nq2_C Hypothetical ABC transp 100.0 2.8E-43 9.7E-48 376.6 19.7 204 99-325 4-217 (253)
99 1sgw_A Putative ABC transporte 100.0 4.7E-43 1.6E-47 364.2 16.5 194 99-314 10-210 (214)
100 1sgw_A Putative ABC transporte 100.0 2.8E-43 9.5E-48 365.9 14.7 196 743-959 9-210 (214)
101 1tf7_A KAIC; homohexamer, hexa 100.0 2.4E-38 8.1E-43 376.1 -5.2 170 745-958 258-444 (525)
102 2v9p_A Replication protein E1; 100.0 1.7E-39 5.9E-44 353.1 -17.3 220 695-984 55-276 (305)
103 3bk7_A ABC transporter ATP-bin 100.0 9.4E-35 3.2E-39 346.6 16.5 202 98-325 356-563 (607)
104 1yqt_A RNAse L inhibitor; ATP- 100.0 7.2E-35 2.4E-39 344.5 14.1 202 98-325 286-493 (538)
105 3ozx_A RNAse L inhibitor; ATP 100.0 2.8E-34 9.6E-39 338.2 16.5 201 98-325 268-477 (538)
106 3j16_B RLI1P; ribosome recycli 100.0 6.2E-33 2.1E-37 330.1 16.3 198 103-326 350-560 (608)
107 3ux8_A Excinuclease ABC, A sub 100.0 5.9E-33 2E-37 339.3 15.6 206 761-980 32-308 (670)
108 2iw3_A Elongation factor 3A; a 100.0 8.5E-32 2.9E-36 330.5 25.3 197 743-970 434-635 (986)
109 2v9p_A Replication protein E1; 100.0 1.8E-36 6.2E-41 329.4 -18.4 236 30-335 36-273 (305)
110 3pih_A Uvrabc system protein A 100.0 5.3E-30 1.8E-34 314.9 17.9 205 117-332 599-909 (916)
111 4aby_A DNA repair protein RECN 100.0 1.3E-29 4.3E-34 293.5 14.2 201 762-963 50-381 (415)
112 2r6f_A Excinuclease ABC subuni 100.0 5.9E-29 2E-33 302.4 17.7 214 98-330 628-947 (972)
113 2vf7_A UVRA2, excinuclease ABC 100.0 5E-29 1.7E-33 303.8 17.0 214 98-327 501-829 (842)
114 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.2E-32 4E-37 317.9 -15.6 192 743-970 117-338 (460)
115 4aby_A DNA repair protein RECN 100.0 2.7E-28 9.2E-33 282.4 19.2 200 117-317 50-380 (415)
116 2ygr_A Uvrabc system protein A 100.0 2.1E-28 7.2E-33 298.8 17.3 215 98-331 646-966 (993)
117 2npi_A Protein CLP1; CLP1-PCF1 99.9 2.1E-30 7.2E-35 299.1 -8.5 184 119-325 129-338 (460)
118 1e69_A Chromosome segregation 99.9 2.2E-26 7.4E-31 256.2 15.3 203 764-968 16-311 (322)
119 1e69_A Chromosome segregation 99.9 3E-26 1E-30 255.1 16.1 195 119-314 16-301 (322)
120 3b85_A Phosphate starvation-in 99.9 4.4E-28 1.5E-32 250.9 -4.8 158 761-959 14-172 (208)
121 3b85_A Phosphate starvation-in 99.9 1.2E-27 4.1E-32 247.6 -6.1 156 116-312 14-170 (208)
122 1z6g_A Guanylate kinase; struc 99.9 3.6E-28 1.2E-32 254.9 -14.4 166 761-956 11-193 (218)
123 4gp7_A Metallophosphoesterase; 99.9 1.4E-25 4.7E-30 226.0 2.5 149 765-951 1-168 (171)
124 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4.8E-24 1.6E-28 240.6 14.9 82 880-961 276-364 (365)
125 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4.5E-24 1.5E-28 240.8 14.1 84 233-316 274-364 (365)
126 2pt7_A CAG-ALFA; ATPase, prote 99.9 3.8E-26 1.3E-30 253.8 -4.6 141 747-959 151-292 (330)
127 4gp7_A Metallophosphoesterase; 99.9 4.6E-25 1.6E-29 222.2 2.4 149 120-306 1-168 (171)
128 1ye8_A Protein THEP1, hypothet 99.9 7.4E-25 2.5E-29 221.3 0.8 147 130-316 2-159 (178)
129 1ye8_A Protein THEP1, hypothet 99.9 5.2E-25 1.8E-29 222.4 -0.9 148 775-962 2-160 (178)
130 2dpy_A FLII, flagellum-specifi 99.9 2.6E-25 8.7E-30 255.4 -8.3 196 743-971 130-345 (438)
131 1z6g_A Guanylate kinase; struc 99.9 8.1E-26 2.8E-30 237.0 -13.1 166 117-311 12-193 (218)
132 1tq4_A IIGP1, interferon-induc 99.9 1.2E-24 4.2E-29 246.3 -6.6 167 761-952 37-248 (413)
133 1tq4_A IIGP1, interferon-induc 99.9 1.8E-24 6.2E-29 244.9 -8.8 166 116-306 37-247 (413)
134 2dpy_A FLII, flagellum-specifi 99.9 7.5E-24 2.6E-28 243.2 -6.0 192 98-323 130-342 (438)
135 2pt7_A CAG-ALFA; ATPase, prote 99.8 3E-23 1E-27 230.4 -2.6 131 117-313 160-291 (330)
136 3b9q_A Chloroplast SRP recepto 99.8 7.7E-23 2.6E-27 223.9 -2.2 176 763-960 90-285 (302)
137 2o5v_A DNA replication and rep 99.8 7.3E-21 2.5E-25 212.2 12.3 81 238-323 265-354 (359)
138 3aez_A Pantothenate kinase; tr 99.8 1.6E-23 5.3E-28 230.5 -9.2 176 741-958 40-246 (312)
139 3sop_A Neuronal-specific septi 99.8 1E-22 3.4E-27 219.6 -2.9 147 775-946 4-154 (270)
140 2o5v_A DNA replication and rep 99.8 1.2E-20 4E-25 210.6 12.6 82 883-969 265-355 (359)
141 3sop_A Neuronal-specific septi 99.8 1.2E-22 4E-27 219.1 -3.8 146 130-300 4-153 (270)
142 2f1r_A Molybdopterin-guanine d 99.8 2.7E-23 9.1E-28 207.7 -8.3 110 774-904 3-124 (171)
143 3b9q_A Chloroplast SRP recepto 99.8 1.7E-22 5.9E-27 221.1 -2.6 175 118-314 90-284 (302)
144 2eyu_A Twitching motility prot 99.8 3.8E-24 1.3E-28 229.6 -17.8 174 761-943 15-241 (261)
145 2og2_A Putative signal recogni 99.8 6.2E-22 2.1E-26 220.3 -1.1 174 764-959 148-341 (359)
146 3aez_A Pantothenate kinase; tr 99.8 3.3E-23 1.1E-27 227.8 -12.6 142 96-271 40-209 (312)
147 2ewv_A Twitching motility prot 99.8 1.9E-23 6.4E-28 236.0 -16.3 175 761-944 126-353 (372)
148 1znw_A Guanylate kinase, GMP k 99.8 1E-22 3.5E-27 211.8 -9.8 167 115-310 9-202 (207)
149 2i3b_A HCR-ntpase, human cance 99.8 5.8E-22 2E-26 201.7 -4.3 172 773-981 1-182 (189)
150 2og2_A Putative signal recogni 99.8 1.6E-21 5.6E-26 216.9 -1.7 174 119-314 148-341 (359)
151 1znw_A Guanylate kinase, GMP k 99.8 4.5E-22 1.5E-26 207.0 -7.3 167 761-955 10-202 (207)
152 1lvg_A Guanylate kinase, GMP k 99.8 1.1E-22 3.9E-27 209.8 -12.0 159 770-956 1-173 (198)
153 2obl_A ESCN; ATPase, hydrolase 99.8 6.7E-21 2.3E-25 212.2 -0.9 194 98-323 44-253 (347)
154 2obl_A ESCN; ATPase, hydrolase 99.8 7.6E-21 2.6E-25 211.8 -2.6 195 744-970 45-255 (347)
155 3qkt_A DNA double-strand break 99.8 1.7E-18 5.7E-23 193.9 16.0 76 235-310 245-327 (339)
156 4ad8_A DNA repair protein RECN 99.8 4.1E-19 1.4E-23 210.3 11.6 77 236-312 394-473 (517)
157 4ad8_A DNA repair protein RECN 99.8 1.2E-18 4.1E-23 206.3 11.8 76 882-957 395-473 (517)
158 2i3b_A HCR-ntpase, human cance 99.8 6.6E-21 2.3E-25 193.9 -6.9 158 128-317 1-168 (189)
159 1cr0_A DNA primase/helicase; R 99.8 4.8E-19 1.7E-23 194.9 7.2 181 761-959 23-237 (296)
160 2eyu_A Twitching motility prot 99.7 9.8E-20 3.4E-24 195.2 0.8 131 117-311 16-147 (261)
161 3qkt_A DNA double-strand break 99.7 1.3E-17 4.5E-22 186.6 17.1 78 881-958 246-332 (339)
162 1cr0_A DNA primase/helicase; R 99.7 6.2E-19 2.1E-23 194.0 5.4 181 116-314 23-237 (296)
163 2o8b_B DNA mismatch repair pro 99.7 1E-18 3.6E-23 219.0 8.1 170 98-320 749-937 (1022)
164 1tf7_A KAIC; homohexamer, hexa 99.7 3.9E-18 1.3E-22 202.3 12.3 152 122-313 275-444 (525)
165 2f1r_A Molybdopterin-guanine d 99.7 1.6E-20 5.6E-25 187.5 -6.9 111 129-260 3-125 (171)
166 2o8b_B DNA mismatch repair pro 99.7 4.2E-18 1.4E-22 213.5 12.6 172 743-967 749-939 (1022)
167 1lw7_A Transcriptional regulat 99.7 4.4E-20 1.5E-24 209.1 -4.9 148 762-911 157-329 (365)
168 2jeo_A Uridine-cytidine kinase 99.7 2E-19 6.7E-24 192.2 -3.0 167 759-970 11-187 (245)
169 3asz_A Uridine kinase; cytidin 99.7 3.9E-20 1.3E-24 192.9 -9.3 140 770-942 3-161 (211)
170 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 1.7E-17 5.7E-22 161.3 9.9 81 233-313 52-141 (148)
171 1pzn_A RAD51, DNA repair and r 99.7 8.7E-19 3E-23 196.2 0.8 166 762-969 119-314 (349)
172 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 4.1E-17 1.4E-21 158.5 10.5 80 880-959 54-142 (148)
173 1w1w_A Structural maintenance 99.7 5.1E-17 1.7E-21 188.1 12.7 73 238-310 333-410 (430)
174 4a74_A DNA repair and recombin 99.7 5.2E-18 1.8E-22 179.2 3.8 152 124-312 21-200 (231)
175 3thx_A DNA mismatch repair pro 99.7 6E-17 2.1E-21 200.4 13.7 167 98-323 630-811 (934)
176 1w1w_A Structural maintenance 99.7 1.9E-16 6.4E-21 183.4 16.1 73 883-955 333-410 (430)
177 1ewq_A DNA mismatch repair pro 99.7 5.9E-18 2E-22 205.9 3.0 147 97-303 548-704 (765)
178 2ehv_A Hypothetical protein PH 99.7 2.3E-18 8E-23 184.3 -0.6 180 745-955 7-206 (251)
179 2ewv_A Twitching motility prot 99.7 1E-19 3.4E-24 205.5 -12.3 174 117-299 127-353 (372)
180 2jeo_A Uridine-cytidine kinase 99.7 1.4E-18 4.7E-23 185.6 -2.9 166 114-325 11-187 (245)
181 2gza_A Type IV secretion syste 99.7 2.6E-19 8.9E-24 201.6 -9.2 148 746-896 137-300 (361)
182 1ewq_A DNA mismatch repair pro 99.7 1.9E-17 6.5E-22 201.5 6.4 147 742-948 548-704 (765)
183 3thx_A DNA mismatch repair pro 99.7 8.6E-17 2.9E-21 199.1 11.3 167 743-968 630-811 (934)
184 4a74_A DNA repair and recombin 99.7 3.5E-17 1.2E-21 172.8 6.6 148 769-958 21-201 (231)
185 1rj9_A FTSY, signal recognitio 99.7 2.4E-17 8.1E-22 180.3 5.1 163 772-958 101-284 (304)
186 3jvv_A Twitching mobility prot 99.7 1.2E-17 4.2E-22 186.4 2.8 146 748-956 92-245 (356)
187 1pui_A ENGB, probable GTP-bind 99.7 3.4E-18 1.2E-22 177.8 -2.5 170 745-931 4-198 (210)
188 1pzn_A RAD51, DNA repair and r 99.7 1.7E-17 5.7E-22 185.8 2.8 162 117-320 119-310 (349)
189 2qnr_A Septin-2, protein NEDD5 99.7 3.1E-18 1.1E-22 188.0 -3.8 162 103-298 2-168 (301)
190 1rj9_A FTSY, signal recognitio 99.7 9.8E-17 3.4E-21 175.4 8.2 151 127-299 101-260 (304)
191 3szr_A Interferon-induced GTP- 99.6 2E-18 6.9E-23 207.1 -5.9 188 99-322 10-234 (608)
192 2qag_C Septin-7; cell cycle, c 99.6 1E-17 3.5E-22 190.5 -0.1 166 743-945 10-180 (418)
193 3szr_A Interferon-induced GTP- 99.6 1E-18 3.5E-23 209.7 -9.1 190 744-969 10-236 (608)
194 1lw7_A Transcriptional regulat 99.6 9.1E-19 3.1E-23 198.3 -9.8 162 118-309 158-341 (365)
195 2ehv_A Hypothetical protein PH 99.6 1.8E-17 6.1E-22 177.4 0.6 179 100-311 7-207 (251)
196 3asz_A Uridine kinase; cytidin 99.6 1E-18 3.4E-23 182.2 -9.4 140 125-297 3-161 (211)
197 3jvv_A Twitching mobility prot 99.6 5.1E-17 1.7E-21 181.4 1.0 147 103-312 92-246 (356)
198 2gza_A Type IV secretion syste 99.6 2.8E-20 9.5E-25 209.5 -26.0 222 23-251 53-300 (361)
199 1odf_A YGR205W, hypothetical 3 99.6 3.8E-18 1.3E-22 185.6 -8.5 121 772-918 30-169 (290)
200 3kta_B Chromosome segregation 99.6 1.8E-15 6.2E-20 150.8 11.2 78 882-959 63-146 (173)
201 1lvg_A Guanylate kinase, GMP k 99.6 2.2E-19 7.4E-24 185.1 -17.8 158 126-311 2-173 (198)
202 2qnr_A Septin-2, protein NEDD5 99.6 3E-17 1E-21 180.1 -2.2 163 748-944 2-169 (301)
203 1pui_A ENGB, probable GTP-bind 99.6 1.6E-17 5.5E-22 172.8 -4.3 168 100-285 4-197 (210)
204 2qag_C Septin-7; cell cycle, c 99.6 4.1E-17 1.4E-21 185.5 -1.5 166 98-300 10-180 (418)
205 3thx_B DNA mismatch repair pro 99.6 2.4E-16 8.1E-21 194.5 4.5 159 99-306 640-805 (918)
206 3kta_B Chromosome segregation 99.6 2.4E-15 8E-20 150.0 9.7 80 235-314 61-146 (173)
207 2w0m_A SSO2452; RECA, SSPF, un 99.6 4.4E-16 1.5E-20 164.6 3.2 165 115-312 9-192 (235)
208 2w0m_A SSO2452; RECA, SSPF, un 99.6 1.1E-15 3.9E-20 161.4 4.7 164 760-957 9-192 (235)
209 3thx_B DNA mismatch repair pro 99.6 2.5E-15 8.4E-20 185.5 7.9 157 743-950 639-804 (918)
210 1s96_A Guanylate kinase, GMP k 99.6 5.1E-16 1.7E-20 161.8 1.4 143 768-970 11-160 (219)
211 1wb9_A DNA mismatch repair pro 99.5 8.9E-16 3.1E-20 188.0 3.0 167 99-317 577-750 (800)
212 2qag_B Septin-6, protein NEDD5 99.5 1.5E-15 5E-20 171.6 2.9 181 744-941 16-218 (427)
213 1s96_A Guanylate kinase, GMP k 99.5 3.9E-16 1.3E-20 162.7 -2.2 144 122-325 10-160 (219)
214 1nij_A Hypothetical protein YJ 99.5 6.9E-17 2.4E-21 178.9 -8.7 149 774-942 5-189 (318)
215 1nlf_A Regulatory protein REPA 99.5 1.4E-14 4.9E-19 157.5 9.9 151 124-300 26-184 (279)
216 3c8u_A Fructokinase; YP_612366 99.5 5.9E-18 2E-22 176.0 -16.5 146 770-943 19-184 (208)
217 1nlf_A Regulatory protein REPA 99.5 2.3E-14 7.9E-19 155.9 10.7 151 769-945 26-184 (279)
218 2qag_B Septin-6, protein NEDD5 99.5 1.6E-15 5.6E-20 171.2 1.2 180 99-295 16-217 (427)
219 1odf_A YGR205W, hypothetical 3 99.5 1.6E-16 5.3E-21 172.8 -7.4 130 126-273 29-169 (290)
220 2cvh_A DNA repair and recombin 99.5 1.8E-14 6.2E-19 150.7 7.6 151 761-957 7-185 (220)
221 1zp6_A Hypothetical protein AT 99.5 1.2E-15 4.1E-20 156.1 -1.7 138 769-928 5-146 (191)
222 1wb9_A DNA mismatch repair pro 99.5 7.6E-15 2.6E-19 179.8 4.8 166 743-962 576-750 (800)
223 1nij_A Hypothetical protein YJ 99.5 8.5E-17 2.9E-21 178.1 -12.7 155 129-300 5-192 (318)
224 1zp6_A Hypothetical protein AT 99.5 1.3E-15 4.4E-20 155.8 -4.7 151 124-296 5-159 (191)
225 2cvh_A DNA repair and recombin 99.5 1.6E-13 5.6E-18 143.4 11.1 151 116-312 7-185 (220)
226 1n0w_A DNA repair protein RAD5 99.4 1.6E-13 5.4E-18 145.9 8.6 146 769-957 20-209 (243)
227 2qm8_A GTPase/ATPase; G protei 99.4 1E-15 3.4E-20 170.5 -9.0 172 745-930 30-259 (337)
228 2yhs_A FTSY, cell division pro 99.4 8.3E-14 2.9E-18 159.0 4.7 158 764-944 284-450 (503)
229 3c8u_A Fructokinase; YP_612366 99.4 7.9E-16 2.7E-20 159.8 -12.6 134 125-299 19-160 (208)
230 1n0w_A DNA repair protein RAD5 99.4 3.1E-13 1.1E-17 143.6 7.1 146 124-312 20-209 (243)
231 2yhs_A FTSY, cell division pro 99.4 2.3E-13 7.7E-18 155.4 5.6 149 119-295 284-447 (503)
232 2bdt_A BH3686; alpha-beta prot 99.3 1.8E-16 6.2E-21 162.0 -20.8 165 773-968 2-182 (189)
233 2oap_1 GSPE-2, type II secreti 99.3 3.2E-15 1.1E-19 174.7 -13.6 171 761-947 248-455 (511)
234 2bdt_A BH3686; alpha-beta prot 99.3 4.2E-15 1.4E-19 151.9 -11.7 161 128-323 2-182 (189)
235 2bbw_A Adenylate kinase 4, AK4 99.3 4.9E-14 1.7E-18 150.3 -4.1 137 127-285 26-197 (246)
236 1htw_A HI0065; nucleotide-bind 99.3 1E-13 3.5E-18 136.4 -1.7 86 748-842 11-96 (158)
237 3auy_A DNA double-strand break 99.3 4.2E-12 1.4E-16 143.7 11.0 74 882-955 279-359 (371)
238 1p9r_A General secretion pathw 99.3 7.2E-15 2.5E-19 167.2 -12.1 142 745-906 144-314 (418)
239 3auy_A DNA double-strand break 99.3 3.3E-12 1.1E-16 144.6 9.6 74 237-310 279-359 (371)
240 3e70_C DPA, signal recognition 99.3 2.5E-12 8.5E-17 141.8 8.0 165 770-960 126-307 (328)
241 1sxj_E Activator 1 40 kDa subu 99.3 1.9E-12 6.6E-17 145.8 7.0 137 776-945 39-177 (354)
242 2qm8_A GTPase/ATPase; G protei 99.3 6E-14 2E-18 156.2 -5.6 177 102-285 32-259 (337)
243 1htw_A HI0065; nucleotide-bind 99.3 6.8E-14 2.3E-18 137.6 -4.6 87 103-198 11-97 (158)
244 2rcn_A Probable GTPase ENGC; Y 99.3 1.9E-12 6.5E-17 143.4 6.5 121 117-253 205-328 (358)
245 3lda_A DNA repair protein RAD5 99.3 2.5E-12 8.5E-17 145.5 7.0 147 769-958 174-364 (400)
246 1p9r_A General secretion pathw 99.3 5.3E-15 1.8E-19 168.4 -15.8 129 117-262 158-315 (418)
247 3e70_C DPA, signal recognition 99.3 8.5E-12 2.9E-16 137.6 9.4 142 124-296 125-278 (328)
248 2rcn_A Probable GTPase ENGC; Y 99.2 7.9E-12 2.7E-16 138.4 8.9 122 762-899 205-329 (358)
249 3lda_A DNA repair protein RAD5 99.2 3.4E-12 1.2E-16 144.4 5.9 146 124-312 174-363 (400)
250 2kjq_A DNAA-related protein; s 99.2 9.2E-12 3.1E-16 121.4 8.2 92 762-942 30-125 (149)
251 2bbw_A Adenylate kinase 4, AK4 99.2 2.5E-13 8.6E-18 144.8 -4.1 146 772-930 26-197 (246)
252 2kjq_A DNAA-related protein; s 99.2 7.6E-12 2.6E-16 122.0 6.7 91 117-296 30-124 (149)
253 2oap_1 GSPE-2, type II secreti 99.2 3.6E-14 1.2E-18 165.8 -12.4 172 116-302 248-455 (511)
254 1sxj_E Activator 1 40 kDa subu 99.2 6.8E-12 2.3E-16 141.3 5.6 138 130-300 38-177 (354)
255 3ec2_A DNA replication protein 99.2 4.3E-12 1.5E-16 128.3 1.0 112 122-299 32-145 (180)
256 1udx_A The GTP-binding protein 99.1 9.8E-12 3.4E-16 141.2 2.8 153 763-940 147-306 (416)
257 2yv5_A YJEQ protein; hydrolase 99.1 4E-12 1.4E-16 139.4 -0.5 114 124-251 161-300 (302)
258 2x8a_A Nuclear valosin-contain 99.1 5.3E-14 1.8E-18 152.1 -16.0 143 116-281 34-190 (274)
259 2x8a_A Nuclear valosin-contain 99.1 2.5E-13 8.6E-18 146.9 -10.9 143 761-926 34-190 (274)
260 1sq5_A Pantothenate kinase; P- 99.1 7.8E-13 2.7E-17 145.7 -7.2 140 742-916 35-199 (308)
261 2yv5_A YJEQ protein; hydrolase 99.1 1E-11 3.5E-16 136.1 1.7 114 769-896 161-300 (302)
262 3ec2_A DNA replication protein 99.1 6.3E-11 2.1E-15 119.7 7.3 111 767-943 32-144 (180)
263 3lnc_A Guanylate kinase, GMP k 99.1 2.6E-13 8.7E-18 143.3 -12.6 176 762-959 16-213 (231)
264 1sq5_A Pantothenate kinase; P- 99.1 8E-13 2.7E-17 145.6 -9.2 139 98-271 36-199 (308)
265 1ls1_A Signal recognition part 99.0 2.1E-10 7.2E-15 125.1 7.9 142 745-939 77-219 (295)
266 1udx_A The GTP-binding protein 99.0 4.5E-11 1.6E-15 135.7 2.1 154 118-296 147-307 (416)
267 1cke_A CK, MSSA, protein (cyti 99.0 7.4E-12 2.5E-16 131.5 -5.9 128 773-912 5-151 (227)
268 1vma_A Cell division protein F 99.0 8.5E-10 2.9E-14 120.3 8.7 98 766-912 97-197 (306)
269 1u0l_A Probable GTPase ENGC; p 99.0 6.9E-11 2.4E-15 129.5 -0.2 94 123-217 164-280 (301)
270 3euj_A Chromosome partition pr 98.9 3.4E-10 1.1E-14 130.1 5.3 65 746-816 8-72 (483)
271 1u0l_A Probable GTPase ENGC; p 98.9 1.4E-10 4.7E-15 127.2 1.6 102 768-870 164-289 (301)
272 3lnc_A Guanylate kinase, GMP k 98.9 6.8E-13 2.3E-17 140.0 -16.4 145 117-284 16-176 (231)
273 4e22_A Cytidylate kinase; P-lo 98.9 1.1E-10 3.9E-15 124.5 -1.0 99 761-869 18-134 (252)
274 2px0_A Flagellar biosynthesis 98.9 1.2E-09 4.1E-14 118.9 6.5 138 771-961 103-246 (296)
275 1vma_A Cell division protein F 98.8 1.5E-09 5.1E-14 118.4 5.4 112 121-284 97-211 (306)
276 1ls1_A Signal recognition part 98.8 4.9E-09 1.7E-13 114.2 9.0 132 100-284 77-209 (295)
277 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 1.3E-11 4.3E-16 138.9 -12.0 169 769-965 16-208 (392)
278 1t9h_A YLOQ, probable GTPase E 98.8 1.7E-10 5.9E-15 125.4 -3.1 73 123-197 168-248 (307)
279 3euj_A Chromosome partition pr 98.8 9.6E-10 3.3E-14 126.3 2.8 51 117-168 19-69 (483)
280 3tr0_A Guanylate kinase, GMP k 98.8 4.6E-10 1.6E-14 115.7 -0.2 73 122-198 1-74 (205)
281 1t9h_A YLOQ, probable GTPase E 98.8 3.3E-10 1.1E-14 123.2 -1.5 93 770-864 170-287 (307)
282 1in4_A RUVB, holliday junction 98.8 2.8E-12 9.7E-17 143.1 -18.4 159 102-285 21-193 (334)
283 2px0_A Flagellar biosynthesis 98.8 3.4E-09 1.2E-13 115.4 6.2 139 126-317 103-247 (296)
284 2ius_A DNA translocase FTSK; n 98.8 3.7E-10 1.3E-14 130.7 -3.2 158 765-943 159-343 (512)
285 3a00_A Guanylate kinase, GMP k 98.8 6.9E-10 2.3E-14 112.7 -0.9 128 773-909 1-169 (186)
286 1iy2_A ATP-dependent metallopr 98.8 8.7E-12 3E-16 135.4 -16.0 132 101-259 51-190 (278)
287 3ney_A 55 kDa erythrocyte memb 98.7 1.4E-09 4.9E-14 110.2 1.2 81 770-859 16-109 (197)
288 3tr0_A Guanylate kinase, GMP k 98.7 2.4E-09 8.3E-14 110.2 2.9 72 767-842 1-73 (205)
289 1in4_A RUVB, holliday junction 98.7 2.2E-11 7.4E-16 135.9 -13.6 141 761-930 32-193 (334)
290 2dy1_A Elongation factor G; tr 98.7 6.8E-09 2.3E-13 125.8 6.9 76 767-843 3-80 (665)
291 2dr3_A UPF0273 protein PH0284; 98.7 7.7E-09 2.6E-13 109.7 6.4 167 761-956 10-196 (247)
292 1oix_A RAS-related protein RAB 98.7 3.4E-10 1.2E-14 115.4 -4.0 140 775-929 31-189 (191)
293 1ixz_A ATP-dependent metallopr 98.7 1.2E-11 4.2E-16 132.3 -16.1 137 100-265 26-170 (254)
294 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 5.3E-12 1.8E-16 141.9 -19.8 166 124-321 16-209 (392)
295 1iy2_A ATP-dependent metallopr 98.7 2.9E-11 9.8E-16 131.3 -13.5 137 746-911 51-195 (278)
296 3k1j_A LON protease, ATP-depen 98.7 4.8E-10 1.6E-14 135.0 -4.9 156 116-283 48-227 (604)
297 2dr3_A UPF0273 protein PH0284; 98.7 3.7E-09 1.3E-13 112.1 2.1 166 117-311 11-196 (247)
298 2zr9_A Protein RECA, recombina 98.7 5.9E-08 2E-12 108.0 11.4 143 769-964 57-237 (349)
299 1qhl_A Protein (cell division 98.7 5.2E-10 1.8E-14 116.4 -5.1 75 99-184 9-91 (227)
300 2zr9_A Protein RECA, recombina 98.7 2.4E-08 8.3E-13 111.2 8.0 143 124-318 57-236 (349)
301 3a00_A Guanylate kinase, GMP k 98.7 1.3E-09 4.5E-14 110.5 -2.3 43 128-172 1-56 (186)
302 1oix_A RAS-related protein RAB 98.7 3.1E-09 1E-13 108.3 0.4 141 130-283 31-188 (191)
303 1ixz_A ATP-dependent metallopr 98.7 4.3E-11 1.5E-15 128.1 -14.4 139 745-912 26-172 (254)
304 1cke_A CK, MSSA, protein (cyti 98.6 2.2E-10 7.4E-15 120.2 -9.2 128 127-266 4-150 (227)
305 2ius_A DNA translocase FTSK; n 98.6 7.3E-10 2.5E-14 128.2 -5.7 158 120-298 159-343 (512)
306 1qhl_A Protein (cell division 98.6 9.8E-10 3.3E-14 114.3 -5.0 75 744-829 9-91 (227)
307 4e22_A Cytidylate kinase; P-lo 98.6 1.4E-09 4.8E-14 116.0 -4.2 72 126-197 25-114 (252)
308 3k1j_A LON protease, ATP-depen 98.6 1.8E-09 6.3E-14 129.9 -3.8 157 761-929 48-228 (604)
309 2r6a_A DNAB helicase, replicat 98.6 1.1E-07 3.6E-12 110.5 10.8 177 761-959 191-401 (454)
310 1kgd_A CASK, peripheral plasma 98.6 8.9E-09 3E-13 103.8 1.5 80 772-858 4-94 (180)
311 2qt1_A Nicotinamide riboside k 98.6 9.2E-09 3.2E-13 106.1 0.9 52 768-845 16-67 (207)
312 2r6a_A DNAB helicase, replicat 98.5 2.1E-08 7.2E-13 116.4 2.9 177 116-314 191-401 (454)
313 1svm_A Large T antigen; AAA+ f 98.5 1.3E-09 4.4E-14 122.2 -9.2 136 761-912 157-312 (377)
314 3ney_A 55 kDa erythrocyte memb 98.4 1.2E-08 4.1E-13 103.4 -2.6 74 122-201 13-99 (197)
315 2f9l_A RAB11B, member RAS onco 98.4 3.5E-08 1.2E-12 101.0 0.8 138 775-929 7-165 (199)
316 2f9l_A RAB11B, member RAS onco 98.4 1.2E-07 4.1E-12 96.9 3.9 36 247-284 130-165 (199)
317 3tau_A Guanylate kinase, GMP k 98.4 5.2E-08 1.8E-12 100.6 0.6 80 771-857 6-96 (208)
318 2dy1_A Elongation factor G; tr 98.4 7.2E-08 2.5E-12 116.8 2.0 135 122-300 3-139 (665)
319 1svm_A Large T antigen; AAA+ f 98.4 1.9E-09 6.6E-14 120.7 -10.9 132 116-267 157-312 (377)
320 2ce7_A Cell division protein F 98.3 4.9E-07 1.7E-11 104.3 7.8 113 117-300 40-167 (476)
321 3kta_A Chromosome segregation 98.3 9.6E-08 3.3E-12 96.2 1.1 99 764-863 18-136 (182)
322 2ce7_A Cell division protein F 98.3 9.3E-07 3.2E-11 102.0 9.0 113 762-945 40-167 (476)
323 2qtf_A Protein HFLX, GTP-bindi 98.3 3.3E-07 1.1E-11 102.6 4.9 144 128-284 178-351 (364)
324 3t34_A Dynamin-related protein 98.3 6E-07 2.1E-11 100.9 6.4 45 116-163 25-71 (360)
325 4eun_A Thermoresistant glucoki 98.3 9.2E-08 3.1E-12 98.1 -0.4 59 122-185 23-81 (200)
326 3nwj_A ATSK2; P loop, shikimat 98.3 7.8E-08 2.7E-12 101.7 -1.5 52 744-797 17-72 (250)
327 2j41_A Guanylate kinase; GMP, 98.2 1.9E-07 6.5E-12 96.0 1.4 84 768-858 1-95 (207)
328 4eun_A Thermoresistant glucoki 98.2 2.5E-07 8.4E-12 94.8 1.6 62 767-833 23-84 (200)
329 3uie_A Adenylyl-sulfate kinase 98.2 4.4E-08 1.5E-12 100.5 -4.1 51 761-812 13-65 (200)
330 1kgd_A CASK, peripheral plasma 98.2 8E-08 2.7E-12 96.7 -2.3 35 126-160 3-38 (180)
331 1zu4_A FTSY; GTPase, signal re 98.2 3E-07 1E-11 100.9 1.9 69 762-830 94-172 (320)
332 2dhr_A FTSH; AAA+ protein, hex 98.2 2.1E-08 7.1E-13 116.5 -7.7 127 116-268 54-188 (499)
333 2e87_A Hypothetical protein PH 98.2 3E-06 1E-10 95.0 9.7 123 774-943 168-293 (357)
334 3vaa_A Shikimate kinase, SK; s 98.2 4.8E-07 1.6E-11 92.6 2.9 45 753-797 5-49 (199)
335 3t34_A Dynamin-related protein 98.2 7E-07 2.4E-11 100.3 4.4 45 761-808 25-71 (360)
336 3nwj_A ATSK2; P loop, shikimat 98.2 1.2E-07 4.2E-12 100.2 -1.8 52 99-152 17-72 (250)
337 2j41_A Guanylate kinase; GMP, 98.2 6.7E-07 2.3E-11 91.8 3.2 35 123-157 1-35 (207)
338 1zu4_A FTSY; GTPase, signal re 98.1 6E-07 2.1E-11 98.6 2.4 71 118-188 95-175 (320)
339 3cr8_A Sulfate adenylyltranfer 98.1 1.6E-07 5.6E-12 110.3 -2.4 88 769-861 365-468 (552)
340 2qt1_A Nicotinamide riboside k 98.1 3.1E-07 1.1E-11 94.6 -0.0 50 124-199 17-66 (207)
341 3uie_A Adenylyl-sulfate kinase 98.1 5.8E-08 2E-12 99.6 -5.6 59 104-166 4-64 (200)
342 2qtf_A Protein HFLX, GTP-bindi 98.1 1.1E-06 3.7E-11 98.4 3.4 137 776-930 182-352 (364)
343 2dhr_A FTSH; AAA+ protein, hex 98.1 6.6E-08 2.3E-12 112.2 -6.8 138 746-912 42-187 (499)
344 3kta_A Chromosome segregation 98.1 5.5E-07 1.9E-11 90.6 0.3 66 119-185 18-89 (182)
345 3vaa_A Shikimate kinase, SK; s 98.1 1.4E-06 4.9E-11 89.0 3.5 45 108-152 5-49 (199)
346 3hr8_A Protein RECA; alpha and 98.1 1.5E-06 5.1E-11 96.3 3.6 58 124-184 57-115 (356)
347 2z43_A DNA repair and recombin 98.0 3.7E-06 1.3E-10 92.9 6.0 128 769-942 103-258 (324)
348 1jjv_A Dephospho-COA kinase; P 98.0 2.7E-06 9.1E-11 87.4 4.3 69 239-310 60-131 (206)
349 2vp4_A Deoxynucleoside kinase; 98.0 4.7E-07 1.6E-11 94.9 -1.5 62 769-834 16-87 (230)
350 3ice_A Transcription terminati 98.0 7.6E-07 2.6E-11 97.8 -0.1 56 741-798 130-199 (422)
351 3hr8_A Protein RECA; alpha and 98.0 1.8E-05 6.1E-10 87.7 10.7 60 769-831 57-117 (356)
352 2xau_A PRE-mRNA-splicing facto 98.0 4.2E-06 1.4E-10 103.0 5.7 65 883-947 190-257 (773)
353 2e87_A Hypothetical protein PH 97.9 9.6E-06 3.3E-10 90.9 7.6 61 236-297 229-292 (357)
354 1jjv_A Dephospho-COA kinase; P 97.9 2.9E-06 9.9E-11 87.1 2.9 69 885-956 61-132 (206)
355 2xau_A PRE-mRNA-splicing facto 97.9 6.9E-06 2.4E-10 101.1 6.3 66 236-301 188-256 (773)
356 2ffh_A Protein (FFH); SRP54, s 97.9 1.9E-05 6.4E-10 89.6 8.3 161 747-940 79-246 (425)
357 3kl4_A SRP54, signal recogniti 97.8 1.6E-05 5.3E-10 90.4 6.5 41 772-812 96-136 (433)
358 3m6a_A ATP-dependent protease 97.8 3.5E-06 1.2E-10 99.7 0.4 58 747-808 86-143 (543)
359 4a1f_A DNAB helicase, replicat 97.8 5.5E-05 1.9E-09 83.2 9.6 38 761-798 34-71 (338)
360 1rz3_A Hypothetical protein rb 97.7 9.2E-06 3.1E-10 83.1 2.7 48 770-817 19-66 (201)
361 4a1f_A DNAB helicase, replicat 97.7 3.4E-05 1.2E-09 84.8 7.3 122 117-294 35-163 (338)
362 1knq_A Gluconate kinase; ALFA/ 97.7 4.2E-06 1.4E-10 83.4 -0.2 38 126-167 6-43 (175)
363 1knq_A Gluconate kinase; ALFA/ 97.7 1.1E-05 3.9E-10 80.3 2.5 54 771-830 6-60 (175)
364 1v5w_A DMC1, meiotic recombina 97.7 2.7E-05 9.4E-10 86.5 5.8 41 769-809 118-165 (343)
365 3tau_A Guanylate kinase, GMP k 97.7 1E-05 3.6E-10 83.1 2.0 29 126-154 6-34 (208)
366 3ice_A Transcription terminati 97.7 6.6E-06 2.3E-10 90.4 0.1 54 97-152 131-198 (422)
367 2vp4_A Deoxynucleoside kinase; 97.6 1.4E-05 4.7E-10 83.6 2.4 39 124-166 16-54 (230)
368 1rz3_A Hypothetical protein rb 97.6 1.1E-05 3.7E-10 82.6 1.4 43 125-167 19-61 (201)
369 1fnn_A CDC6P, cell division co 97.6 0.00015 5.2E-09 81.8 10.8 44 255-299 124-171 (389)
370 2z43_A DNA repair and recombin 97.6 1.8E-05 6E-10 87.4 2.7 29 124-152 103-131 (324)
371 1fnn_A CDC6P, cell division co 97.6 0.00022 7.4E-09 80.5 11.5 45 900-945 124-172 (389)
372 3tqc_A Pantothenate kinase; bi 97.5 1.3E-05 4.4E-10 87.6 0.3 43 762-804 75-125 (321)
373 3kl4_A SRP54, signal recogniti 97.5 7E-05 2.4E-09 85.0 6.3 37 127-163 96-132 (433)
374 2ffh_A Protein (FFH); SRP54, s 97.5 9.5E-05 3.3E-09 83.8 7.2 60 101-167 78-137 (425)
375 2z4s_A Chromosomal replication 97.5 3.1E-05 1.1E-09 89.2 2.9 66 901-966 194-264 (440)
376 3tqc_A Pantothenate kinase; bi 97.5 1.1E-05 3.9E-10 88.0 -1.3 42 117-158 75-124 (321)
377 1uf9_A TT1252 protein; P-loop, 97.5 6.5E-06 2.2E-10 84.1 -3.0 32 774-810 9-40 (203)
378 2pez_A Bifunctional 3'-phospho 97.5 1.5E-05 5.1E-10 79.8 -0.4 42 771-813 3-46 (179)
379 3cr8_A Sulfate adenylyltranfer 97.5 2.7E-05 9.2E-10 91.5 1.6 42 124-165 365-408 (552)
380 1v5w_A DMC1, meiotic recombina 97.4 0.00018 6.1E-09 79.9 7.3 28 124-151 118-145 (343)
381 3lxx_A GTPase IMAP family memb 97.4 0.00069 2.4E-08 70.9 11.2 29 130-158 31-59 (239)
382 3b9p_A CG5977-PA, isoform A; A 97.4 0.00049 1.7E-08 74.7 10.3 70 885-954 97-186 (297)
383 1sxj_C Activator 1 40 kDa subu 97.4 2.7E-05 9.2E-10 86.6 -0.2 42 761-802 32-75 (340)
384 3b9p_A CG5977-PA, isoform A; A 97.3 0.00077 2.6E-08 73.1 11.2 70 240-309 97-186 (297)
385 2z4s_A Chromosomal replication 97.3 0.00023 7.8E-09 81.9 7.4 44 255-298 193-238 (440)
386 3llm_A ATP-dependent RNA helic 97.3 0.00026 8.9E-09 74.1 7.0 135 770-936 73-212 (235)
387 3lxx_A GTPase IMAP family memb 97.3 0.00097 3.3E-08 69.8 11.0 28 775-802 31-58 (239)
388 1ypw_A Transitional endoplasmi 97.3 5.7E-05 2E-09 93.5 1.7 31 769-799 234-264 (806)
389 1mky_A Probable GTP-binding pr 97.3 0.0001 3.4E-09 85.0 3.3 61 774-834 181-253 (439)
390 3m6a_A ATP-dependent protease 97.3 3.7E-05 1.3E-09 90.9 -0.4 48 116-164 97-144 (543)
391 1ypw_A Transitional endoplasmi 97.3 0.00022 7.4E-09 88.3 6.3 47 765-813 503-549 (806)
392 1ega_A Protein (GTP-binding pr 97.2 0.00026 8.9E-09 77.1 6.2 145 772-946 7-163 (301)
393 1f6b_A SAR1; gtpases, N-termin 97.2 5.9E-05 2E-09 76.7 0.8 56 751-809 6-69 (198)
394 3bh0_A DNAB-like replicative h 97.2 0.00033 1.1E-08 76.7 6.9 35 761-795 56-90 (315)
395 2p67_A LAO/AO transport system 97.2 3.7E-05 1.2E-09 85.5 -0.9 52 761-812 44-95 (341)
396 2qby_A CDC6 homolog 1, cell di 97.2 9E-05 3.1E-09 83.5 2.3 30 771-800 43-72 (386)
397 3bh0_A DNAB-like replicative h 97.2 0.00037 1.2E-08 76.4 7.0 127 117-295 57-189 (315)
398 1mky_A Probable GTP-binding pr 97.2 0.00018 6.2E-09 82.8 4.3 60 129-188 181-252 (439)
399 2www_A Methylmalonic aciduria 97.2 0.00011 3.6E-09 81.9 2.3 43 772-814 73-115 (349)
400 3r20_A Cytidylate kinase; stru 97.2 9.2E-05 3.2E-09 76.9 1.5 70 773-842 9-96 (233)
401 1lv7_A FTSH; alpha/beta domain 97.1 0.0018 6.1E-08 68.6 11.4 46 762-811 36-81 (257)
402 1kag_A SKI, shikimate kinase I 97.1 0.00015 5.1E-09 71.8 2.7 28 127-154 3-30 (173)
403 1ega_A Protein (GTP-binding pr 97.1 0.00016 5.4E-09 78.8 3.1 140 127-300 7-162 (301)
404 1sxj_C Activator 1 40 kDa subu 97.1 4.7E-05 1.6E-09 84.6 -1.3 42 116-157 32-75 (340)
405 2qby_A CDC6 homolog 1, cell di 97.1 0.00038 1.3E-08 78.3 6.1 30 126-155 43-72 (386)
406 2pez_A Bifunctional 3'-phospho 97.1 8.4E-05 2.9E-09 74.2 0.4 38 126-164 3-42 (179)
407 1m2o_B GTP-binding protein SAR 97.1 0.00025 8.5E-09 71.4 3.6 33 762-795 13-45 (190)
408 1lv7_A FTSH; alpha/beta domain 97.1 0.0017 5.8E-08 68.7 10.3 42 118-163 37-78 (257)
409 4eaq_A DTMP kinase, thymidylat 97.0 0.00024 8E-09 74.1 3.2 45 763-808 13-60 (229)
410 1m7g_A Adenylylsulfate kinase; 97.0 0.0001 3.4E-09 75.9 0.3 44 768-811 20-65 (211)
411 2qor_A Guanylate kinase; phosp 97.0 0.00013 4.4E-09 74.6 1.1 54 769-822 8-72 (204)
412 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.0003 1E-08 68.0 3.6 30 119-149 15-44 (149)
413 1kag_A SKI, shikimate kinase I 97.0 0.00022 7.6E-09 70.5 2.8 33 772-808 3-35 (173)
414 2p67_A LAO/AO transport system 97.0 6.1E-05 2.1E-09 83.6 -1.5 47 117-163 45-91 (341)
415 1u94_A RECA protein, recombina 97.0 0.0028 9.5E-08 70.3 11.7 48 761-808 49-99 (356)
416 4eaq_A DTMP kinase, thymidylat 97.0 0.00023 8E-09 74.1 2.8 43 118-161 13-58 (229)
417 2gj8_A MNME, tRNA modification 97.0 0.00036 1.2E-08 69.0 3.7 27 771-797 2-28 (172)
418 3llm_A ATP-dependent RNA helic 97.0 0.00041 1.4E-08 72.5 4.3 123 125-283 73-204 (235)
419 3cf0_A Transitional endoplasmi 97.0 0.0012 4.2E-08 71.7 8.3 31 123-153 44-74 (301)
420 2w58_A DNAI, primosome compone 97.0 0.00084 2.9E-08 68.2 6.3 26 129-154 55-80 (202)
421 1l8q_A Chromosomal replication 96.9 0.001 3.5E-08 73.1 7.3 44 899-942 96-141 (324)
422 2www_A Methylmalonic aciduria 96.9 0.00019 6.5E-09 79.8 1.2 41 126-166 72-112 (349)
423 1m7g_A Adenylylsulfate kinase; 96.9 0.00015 5.2E-09 74.5 0.1 41 123-163 20-62 (211)
424 4dcu_A GTP-binding protein ENG 96.9 0.0012 4.2E-08 76.2 7.7 58 886-945 87-144 (456)
425 1l8q_A Chromosomal replication 96.9 0.0011 3.7E-08 72.9 6.9 44 254-297 96-141 (324)
426 1f6b_A SAR1; gtpases, N-termin 96.8 0.00027 9.1E-09 71.8 1.2 42 106-150 6-47 (198)
427 2qor_A Guanylate kinase; phosp 96.8 0.00018 6.3E-09 73.4 -0.3 30 124-153 8-37 (204)
428 2w58_A DNAI, primosome compone 96.8 0.0013 4.6E-08 66.7 6.1 27 774-800 55-81 (202)
429 3h4m_A Proteasome-activating n 96.8 0.0022 7.7E-08 68.9 8.2 28 125-152 48-75 (285)
430 1m2o_B GTP-binding protein SAR 96.8 0.00083 2.8E-08 67.5 4.5 33 117-150 13-45 (190)
431 3bos_A Putative DNA replicatio 96.8 0.00057 1.9E-08 71.2 3.2 27 127-153 51-77 (242)
432 2gj8_A MNME, tRNA modification 96.7 0.00094 3.2E-08 66.0 4.4 27 126-152 2-28 (172)
433 1j8m_F SRP54, signal recogniti 96.7 0.00028 9.5E-09 76.5 0.5 51 764-815 89-140 (297)
434 2jaq_A Deoxyguanosine kinase; 96.7 0.00011 3.6E-09 74.9 -2.8 69 775-843 2-86 (205)
435 3h4m_A Proteasome-activating n 96.7 0.003 1E-07 67.8 8.6 28 770-797 48-75 (285)
436 4fcw_A Chaperone protein CLPB; 96.7 0.0016 5.5E-08 70.9 6.4 30 774-803 48-77 (311)
437 2i1q_A DNA repair and recombin 96.6 0.00093 3.2E-08 73.5 3.9 27 769-795 94-120 (322)
438 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.001 3.6E-08 64.1 3.8 31 764-795 15-45 (149)
439 3bos_A Putative DNA replicatio 96.6 0.0012 4.2E-08 68.6 4.6 28 772-799 51-78 (242)
440 1u94_A RECA protein, recombina 96.6 0.0034 1.2E-07 69.6 8.4 28 125-152 60-87 (356)
441 3cf0_A Transitional endoplasmi 96.6 0.0032 1.1E-07 68.3 7.7 38 768-807 44-81 (301)
442 1y63_A LMAJ004144AAA protein; 96.6 0.00092 3.2E-08 66.9 3.0 32 120-151 2-33 (184)
443 2ohf_A Protein OLA1, GTP-bindi 96.6 0.00096 3.3E-08 74.6 3.3 41 769-809 18-69 (396)
444 3r20_A Cytidylate kinase; stru 96.5 0.00012 4.2E-09 76.0 -3.8 33 127-159 8-43 (233)
445 2qag_A Septin-2, protein NEDD5 96.5 0.00026 9E-09 79.1 -1.6 58 742-808 15-72 (361)
446 3lxw_A GTPase IMAP family memb 96.5 0.0034 1.2E-07 66.0 6.9 59 885-944 86-151 (247)
447 1njg_A DNA polymerase III subu 96.4 0.0013 4.3E-08 68.3 3.4 45 900-945 125-169 (250)
448 3n70_A Transport activator; si 96.4 0.0068 2.3E-07 57.9 8.2 30 126-155 22-51 (145)
449 1y63_A LMAJ004144AAA protein; 96.4 0.0012 4.1E-08 66.1 3.0 32 765-796 2-33 (184)
450 1np6_A Molybdopterin-guanine d 96.4 0.0014 4.7E-08 64.9 3.2 37 774-810 7-46 (174)
451 1sxj_D Activator 1 41 kDa subu 96.4 0.0012 3.9E-08 73.5 2.9 44 901-945 133-176 (353)
452 2wji_A Ferrous iron transport 96.4 0.0021 7E-08 62.9 4.4 24 774-797 4-27 (165)
453 3qks_A DNA double-strand break 96.4 0.0016 5.4E-08 66.4 3.6 30 119-149 15-44 (203)
454 2yvu_A Probable adenylyl-sulfa 96.4 0.00088 3E-08 67.1 1.7 35 125-159 10-44 (186)
455 4fcw_A Chaperone protein CLPB; 96.4 0.0035 1.2E-07 68.3 6.5 31 129-159 48-78 (311)
456 3n70_A Transport activator; si 96.4 0.0078 2.7E-07 57.5 8.2 27 773-799 24-50 (145)
457 2ohf_A Protein OLA1, GTP-bindi 96.3 0.0017 5.7E-08 72.7 3.5 40 124-163 18-68 (396)
458 2q6t_A DNAB replication FORK h 96.3 0.0048 1.6E-07 70.9 7.4 38 761-798 188-225 (444)
459 1j8m_F SRP54, signal recogniti 96.3 0.00043 1.5E-08 74.9 -1.3 60 101-166 76-136 (297)
460 2wjg_A FEOB, ferrous iron tran 96.3 0.0017 5.8E-08 64.8 3.1 23 774-796 8-30 (188)
461 2wji_A Ferrous iron transport 96.3 0.0035 1.2E-07 61.2 5.2 24 130-153 5-28 (165)
462 2yvu_A Probable adenylyl-sulfa 96.3 0.0015 5.3E-08 65.3 2.7 39 770-808 10-49 (186)
463 1np6_A Molybdopterin-guanine d 96.2 0.0014 4.9E-08 64.8 2.1 35 129-163 7-44 (174)
464 3dm5_A SRP54, signal recogniti 96.2 0.015 5.3E-07 65.8 10.7 35 772-806 99-133 (443)
465 2p5t_B PEZT; postsegregational 96.2 0.0015 5.1E-08 69.1 2.0 41 770-812 29-69 (253)
466 3t61_A Gluconokinase; PSI-biol 96.2 0.0016 5.3E-08 66.2 2.0 35 773-811 18-52 (202)
467 1sxj_D Activator 1 41 kDa subu 96.1 0.0013 4.3E-08 73.1 1.3 43 256-299 133-175 (353)
468 2qag_A Septin-2, protein NEDD5 96.1 0.00048 1.6E-08 77.0 -2.3 57 97-162 15-71 (361)
469 2wjg_A FEOB, ferrous iron tran 96.1 0.0029 9.9E-08 63.0 3.7 22 130-151 9-30 (188)
470 1njg_A DNA polymerase III subu 96.1 0.0015 5.1E-08 67.8 1.5 45 255-300 125-169 (250)
471 3lxw_A GTPase IMAP family memb 96.1 0.011 3.8E-07 62.0 8.1 58 241-299 87-151 (247)
472 3t61_A Gluconokinase; PSI-biol 96.0 0.0014 4.8E-08 66.6 0.9 32 128-163 18-49 (202)
473 4dcu_A GTP-binding protein ENG 96.0 0.0075 2.5E-07 69.6 7.2 56 241-298 87-142 (456)
474 2if2_A Dephospho-COA kinase; a 96.0 0.0026 8.7E-08 64.7 2.9 21 130-150 3-23 (204)
475 1xp8_A RECA protein, recombina 96.0 0.015 5.2E-07 64.6 8.9 28 769-796 70-97 (366)
476 2zej_A Dardarin, leucine-rich 95.9 0.0035 1.2E-07 62.5 3.3 25 775-799 4-28 (184)
477 2v1u_A Cell division control p 95.9 0.012 4.2E-07 65.8 8.0 28 126-153 42-69 (387)
478 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.024 8.1E-07 59.7 9.7 25 128-152 39-63 (262)
479 2zej_A Dardarin, leucine-rich 95.9 0.0037 1.3E-07 62.2 3.2 26 130-155 4-29 (184)
480 2if2_A Dephospho-COA kinase; a 95.8 0.004 1.4E-07 63.2 3.4 21 775-795 3-23 (204)
481 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.043 1.5E-06 57.7 11.4 25 773-797 39-63 (262)
482 2q6t_A DNAB replication FORK h 95.8 0.023 7.9E-07 65.2 9.9 127 117-294 189-317 (444)
483 2v1u_A Cell division control p 95.8 0.0047 1.6E-07 69.3 4.0 28 771-798 42-69 (387)
484 1jal_A YCHF protein; nucleotid 95.8 0.0063 2.2E-07 67.3 4.9 36 773-808 2-48 (363)
485 2p5t_B PEZT; postsegregational 95.8 0.0033 1.1E-07 66.4 2.5 40 125-166 29-68 (253)
486 3ihw_A Centg3; RAS, centaurin, 95.8 0.0067 2.3E-07 60.4 4.6 35 775-809 22-65 (184)
487 3d8b_A Fidgetin-like protein 1 95.7 0.033 1.1E-06 61.9 10.6 26 772-797 116-141 (357)
488 3d8b_A Fidgetin-like protein 1 95.7 0.027 9.1E-07 62.7 9.7 27 126-152 115-141 (357)
489 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.018 6.3E-07 62.1 8.0 28 124-151 119-146 (331)
490 3qks_A DNA double-strand break 95.7 0.0057 1.9E-07 62.2 3.8 30 764-794 15-44 (203)
491 2chg_A Replication factor C sm 95.7 0.031 1.1E-06 56.7 9.4 44 900-944 101-144 (226)
492 3cm0_A Adenylate kinase; ATP-b 95.7 0.0045 1.5E-07 61.7 2.8 27 126-152 2-28 (186)
493 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0015 5.2E-08 71.6 -0.7 37 117-153 11-49 (359)
494 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.073 2.5E-06 58.2 12.8 117 126-310 43-177 (322)
495 1ko7_A HPR kinase/phosphatase; 95.7 0.0061 2.1E-07 65.8 4.0 46 762-808 134-183 (314)
496 2b8t_A Thymidine kinase; deoxy 95.7 0.012 4.1E-07 60.5 6.0 50 901-954 89-149 (223)
497 1qhx_A CPT, protein (chloramph 95.7 0.0058 2E-07 60.4 3.6 26 128-153 3-28 (178)
498 2vhj_A Ntpase P4, P4; non- hyd 95.6 0.014 4.6E-07 63.1 6.4 28 768-795 118-145 (331)
499 3uk6_A RUVB-like 2; hexameric 95.6 0.013 4.5E-07 65.3 6.5 41 771-811 68-108 (368)
500 3cm0_A Adenylate kinase; ATP-b 95.5 0.0056 1.9E-07 61.0 2.9 27 771-797 2-28 (186)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.3e-169 Score=1635.02 Aligned_cols=978 Identities=38% Similarity=0.636 Sum_probs=823.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001980 4 GLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSI 83 (987)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~ 83 (987)
+...++..++..+++++++|+|++++.+|.+++|.+++++.++.....|+..++..+..+.++.+|++|++++++.+++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 399 (1321)
T 4f4c_A 320 GISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVI 399 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 34566777888889999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 84 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
+........+...++.|+++||+|+||++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 400 ~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG 479 (1321)
T 4f4c_A 400 DSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDG 479 (1321)
T ss_dssp SCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCC
Confidence 33222222233445689999999999977777899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 164 VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 164 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
+|+++++.+++|++||||+|+||||++||+|||+||.|+.++++++++|+.++++++++.+|+|++|.+||+|.+|||||
T Consensus 480 ~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQ 559 (1321)
T 4f4c_A 480 VDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQ 559 (1321)
T ss_dssp EETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHH
T ss_pred ccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHH
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 323 (987)
||||+||||+|+||+|||||||||+||+++++.++++|.++.+|+|+|+||||++.++.||+|++|++|+|+++|+|+||
T Consensus 560 kQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL 639 (1321)
T 4f4c_A 560 KQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRAL 639 (1321)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHhhhccccC---CCCccc--ccccccccccccccccccccccccccccc-------cC-CC-C---
Q 001980 324 IAKAGAYASLIRFQEMVRNRDFA---NPSTRR--SRSTRLSHSLSTKSLSLRSGSLRNLSYSY-------ST-GA-D--- 386 (987)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~-~--- 386 (987)
++++|.|++++..|......+.. ....+. .............. +............. .. .. +
T Consensus 640 ~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1321)
T 4f4c_A 640 MAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQA-SEMDDIMNRVRSSTIGSITNGPVIDEKEERI 718 (1321)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCC---------------------------------------------------CCC
T ss_pred HHhhhHHHHHHHhhhccccccccccccccccccccccccccccccccc-ccccchhhhhhccccccccCCcchhHHHhhc
Confidence 99999999999877543221100 000000 00000000000000 00000000000000 00 00 0
Q ss_pred cccccccccccccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHH
Q 001980 387 GRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFV 466 (987)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
.........++.+........+++++.+.++.+..++++++++.+.++..+.+.+++..++..+... +........+|.
T Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 797 (1321)
T 4f4c_A 719 GKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGN-PADFLSQGHFWA 797 (1321)
T ss_dssp CCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSC-SSTTTTTHHHHH
T ss_pred cchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHH
Confidence 0000000000111222234456677778888888888888888888888898888888887765432 233334456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001980 467 FIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVI 546 (987)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~ 546 (987)
++|++++++..++.++..+++.+.+.++..++|.++|++++++|++|||..++++|+++||+++|++.++..++..+..+
T Consensus 798 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~ 877 (1321)
T 4f4c_A 798 LMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTV 877 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHH
Q 001980 547 LQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKI 626 (987)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~ 626 (987)
+..++.++++++++++++|.+++++++++|+++++.++..+..+....+.....++....+.|+++|+++||+|++++.+
T Consensus 878 ~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~ 957 (1321)
T 4f4c_A 878 ITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTF 957 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHH
T ss_pred HHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHH
Confidence 99999999999999999999999999999998887777665555444445555677778889999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHH--HHHHHHHHHHHHHHHHHHHHHH
Q 001980 627 LSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFS--KVIKVFVVLVVTANSVAETVSL 704 (987)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 704 (987)
.++|.+..+...+..++.....++...+...+.++..++++|+|..++..+..+.+ .++.++.++.....++..+...
T Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1037 (1321)
T 4f4c_A 958 YENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSY 1037 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888998888899999999999999988876554 3444444444445567777788
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCC
Q 001980 705 APEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGS 784 (987)
Q Consensus 705 ~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGs 784 (987)
..++.+...+++|++++++.+++.+... ...+.++..|.|+|+||+|+||++++.|||+||||+|+|||+|||||||||
T Consensus 1038 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~-~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGs 1116 (1321)
T 4f4c_A 1038 FPEYAKATFAGGIIFGMLRKISKIDSLS-LAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGC 1116 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSSCTTC-CCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTS
T ss_pred HHHHHHHHHHHHHHHHHhhCcccCCCcc-CCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCC
Confidence 8899999999999999998876654322 223345678999999999999988777899999999999999999999999
Q ss_pred ChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC--CCCCHHHHHHHHHHcCc
Q 001980 785 GKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK--EGATEAEVVEAARAANV 862 (987)
Q Consensus 785 GKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~--~~~sd~ei~~al~~a~l 862 (987)
|||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||.+|. ++++|+|+|+||+.+++
T Consensus 1117 GKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l 1196 (1321)
T 4f4c_A 1117 GKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANI 1196 (1321)
T ss_dssp STTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999873 57899999999999999
Q ss_pred hhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 001980 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 942 (987)
Q Consensus 863 ~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl 942 (987)
++||.++|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.||++|++.+++||+|+|||||
T Consensus 1197 ~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRL 1276 (1321)
T 4f4c_A 1197 HNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRL 1276 (1321)
T ss_dssp HHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSS
T ss_pred hHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhhc
Q 001980 943 STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 943 ~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~~ 985 (987)
+|+++||||+|||+|||+|+|+|+||+++ +|.|++||+.|..
T Consensus 1277 sTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1277 NTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQMT 1318 (1321)
T ss_dssp STTTTCSEEEEESSSSEEEEECHHHHHHC-C------------
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHHh
Confidence 99999999999999999999999999998 8999999999864
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=7.2e-148 Score=1432.09 Aligned_cols=977 Identities=41% Similarity=0.701 Sum_probs=828.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001980 4 GLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSI 83 (987)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~ 83 (987)
+...++..++..+++++++|+|++++..|.+++|.+++++++++....|+..+...+..+..+..+++|+.++++.+++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 371 (1284)
T 3g5u_A 292 NISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSI 371 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 34556777788888999999999999999999999998888888888899999999999999999999999999876654
Q ss_pred CCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 84 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
+........++...+.|+++|++|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||
T Consensus 372 ~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g 451 (1284)
T 3g5u_A 372 DSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG 451 (1284)
T ss_dssp SSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETT
T ss_pred CcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 32111112223345679999999999865556799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 164 VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 164 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
+|+++++.+++|++||||+|+|++|++||+|||.+|.++.++++++++++.+++++++..+|+|++|.+|++|.+|||||
T Consensus 452 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 531 (1284)
T 3g5u_A 452 QDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQ 531 (1284)
T ss_dssp EEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHH
T ss_pred EEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHH
Confidence 99999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHH
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 323 (987)
||||+|||||+++|+|||||||||+||+++++.+.+.++++.+|+|+|+||||++.+..||+|++|++|+|+++|+|+++
T Consensus 532 ~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l 611 (1284)
T 3g5u_A 532 KQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDEL 611 (1284)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccC-CCCcccccccccccccCCC
Q 001980 324 IAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYST-GADGRIEMVSNAETDRKNP 402 (987)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 402 (987)
++.++.|.+++..+.................... ........ ............... ........... ++.....
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 687 (1284)
T 3g5u_A 612 MREKGIYFKLVMTQTAGNEIELGNEACKSKDEID-NLDMSSKD--SGSSLIRRRSTRKSICGPHDQDRKLST-KEALDED 687 (1284)
T ss_dssp HHTTSHHHHHHHHTC-------------------------------------------------------------CCCC
T ss_pred HhCCCHHHHHHHHhhhcccccccccccccccccc-cccccccc--cccccccccccccccccccccccccch-hhhhhcc
Confidence 9999999888765433211110000000000000 00000000 000000000000000 00000000000 0111111
Q ss_pred CCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-chhhhhhHHHHHHHHHHHHHHHHHHH
Q 001980 403 APDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNP-ASMERKTKEFVFIYIGAGLYAVVAYL 481 (987)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (987)
.....+++++++.++.|++++++++++++.+.+.+.+++++..+++.+....+ .........|..+|++++++..++.+
T Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 767 (1284)
T 3g5u_A 688 VPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFF 767 (1284)
T ss_dssp CSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233455566666667777788888888888888888888888876654332 22233455678888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 482 IQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAF 561 (987)
Q Consensus 482 ~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 561 (987)
++.+++.+.+.++..++|.++|++++++|++|||.+.+++|++++|+++|++.++..++..+..++..++.+++++++++
T Consensus 768 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~ 847 (1284)
T 3g5u_A 768 LQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISL 847 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHH
Q 001980 562 IVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQT 641 (987)
Q Consensus 562 ~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~ 641 (987)
+++|.+++++++++|+++++.++..++.+....+..+........+.|+++|+++||+|++++++.++|.+..+...+..
T Consensus 848 ~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~ 927 (1284)
T 3g5u_A 848 IYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNA 927 (1284)
T ss_dssp SSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888877777777777777888899999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 642 LRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFST 721 (987)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~ 721 (987)
.+...+.++..++.+.+.++..++.+|+|.+++..+.++++.++.++.++.....++..+......+.+...+++|+.++
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 1007 (1284)
T 3g5u_A 928 MKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRI 1007 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999998888888888888888888878888899999999999
Q ss_pred hcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC
Q 001980 722 LDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801 (987)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~ 801 (987)
++.+++.++..+...++++..|.|+|+||+|+|+++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++
T Consensus 1008 l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~ 1087 (1284)
T 3g5u_A 1008 IEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087 (1284)
T ss_dssp HHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSE
T ss_pred HcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 98766543322222233445789999999999986555579999999999999999999999999999999999999999
Q ss_pred ceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCC--CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCC
Q 001980 802 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GATEAEVVEAARAANVHGFVSALPNAYKTPVGE 879 (987)
Q Consensus 802 G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge 879 (987)
|+|.+||+|+++++++++|++|+||||||.+|++||+|||.++.+ ..++++++++++.+++++++.++|+||||++||
T Consensus 1088 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp EEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred CEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCC
Confidence 999999999999999999999999999999999999999998865 478999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEE
Q 001980 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959 (987)
Q Consensus 880 ~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~i 959 (987)
+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+|+|+|+||||++++.+||||+||++|+|
T Consensus 1168 ~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i 1247 (1284)
T 3g5u_A 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKV 1247 (1284)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEE
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred EEecChhHHhcCCCchHHHHHHhhhc
Q 001980 960 VEQGSHSELVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 960 ve~Gt~~eLl~~~~g~f~~l~~~q~~ 985 (987)
+|+|+|+||+++ +|.|++||+.|..
T Consensus 1248 ~~~g~~~~l~~~-~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1248 KEHGTHQQLLAQ-KGIYFSMVSVQAG 1272 (1284)
T ss_dssp EEEECHHHHHHS-CSHHHHHHHHHC-
T ss_pred EEECCHHHHHhC-CCHHHHHHHHHhh
Confidence 999999999997 8999999998854
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.2e-93 Score=923.07 Aligned_cols=580 Identities=36% Similarity=0.577 Sum_probs=530.8
Q ss_pred CCCchHHHHHHHHhCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------------------cchhhhhh
Q 001980 402 PAPDGYFLRLLKLNAPE-WPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRN------------------PASMERKT 462 (987)
Q Consensus 402 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~ 462 (987)
..++.+++++++|..+. +..++++++++++.++..|++.++++.+++.+.... ........
T Consensus 56 ~~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (1321)
T 4f4c_A 56 VVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDV 135 (1321)
T ss_dssp CSSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHH
T ss_pred ccCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHH
Confidence 34566788888886653 556677888888889999998888887776542110 01112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHH
Q 001980 463 KEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADR 542 (987)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~ 542 (987)
..+++.+++++++..++.+++.+++.+.+++...++|.++|++++++|++|||+ +++|++++|+++|++.++..+...
T Consensus 136 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~--~~~G~l~sr~~~D~~~i~~~~~~~ 213 (1321)
T 4f4c_A 136 MNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT--NHSGTLATKLFDNLERVKEGTGDK 213 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH--TCCTTHHHHHHHHHHHHHHTSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CChHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888889999999999999999999999999999999999999996 789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhcc
Q 001980 543 ISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNA 622 (987)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~ 622 (987)
+..++..++.++++++++++++|.+++++++++|+++++.++..++.++..++.+...+.....+.|+++|+++||+|++
T Consensus 214 l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 293 (1321)
T 4f4c_A 214 IGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNG 293 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 99999999999999999999999999999999999999888888888888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001980 623 QNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETV 702 (987)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (987)
|+.+.++|.+..+...+...+.....++..++..++.++..++++|+|.+++..|.++++.+++++.++.....++..+.
T Consensus 294 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~ 373 (1321)
T 4f4c_A 294 LRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAG 373 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCC
Q 001980 703 SLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGAS 782 (987)
Q Consensus 703 ~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~s 782 (987)
.....+.++..+++|++++++.+++.+........+.+.+|.|+|+||+|+||++++.++|+|+||+|+|||++||||||
T Consensus 374 ~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~s 453 (1321)
T 4f4c_A 374 PQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSS 453 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecC
Confidence 99999999999999999999987665443333334445678999999999999887889999999999999999999999
Q ss_pred CCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCc
Q 001980 783 GSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANV 862 (987)
Q Consensus 783 GsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l 862 (987)
|||||||+++|+|+|+|++|+|.+||+|++++++++||++|+||||||+||+|||||||.+|.++++++++++||+.+++
T Consensus 454 GsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l 533 (1321)
T 4f4c_A 454 GCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANA 533 (1321)
T ss_dssp SSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 001980 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 942 (987)
Q Consensus 863 ~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl 942 (987)
++||+.||+|+||+|||+|.+||||||||||||||++++|+|||||||||+||++||+.|+++|++..+++|+|+||||+
T Consensus 534 ~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrl 613 (1321)
T 4f4c_A 534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRL 613 (1321)
T ss_dssp HHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCT
T ss_pred hhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhh
Q 001980 943 STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 943 ~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
+++++||+|+||++|+|+|+|+|+||+++ +|.|++|++.|.
T Consensus 614 s~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 614 STIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp TTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 99999999999999999999999999997 899999998874
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.3e-86 Score=796.25 Aligned_cols=569 Identities=24% Similarity=0.379 Sum_probs=508.2
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 409 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFS 488 (987)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (987)
++++++.++.++.+++++++.++.+++....++++..+++....... ......+..+++++.++..++.++..++..
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (587)
T 3qf4_A 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD---FSLVLKTGILMLIVALIGAVGGIGCTVFAS 88 (587)
T ss_dssp CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667778888888888888888888888888888876543211 112233455556666677788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001980 489 IMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVS 568 (987)
Q Consensus 489 ~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 568 (987)
+.+.+...++|.++|+++++.|+.||++ +++|++++|+++|++.++..+...+..++..++.+++++++++.++|.++
T Consensus 89 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 166 (587)
T 3qf4_A 89 YASQNFGADLRRDLFRKVLSFSISNVNR--FHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLS 166 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001980 569 LLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA 648 (987)
Q Consensus 569 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (987)
+++++++|+++++.++..+..++..++.++..++....+.|+++|+++||+|++++.+.++|.+..+...+...+.....
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (587)
T 3qf4_A 167 SVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLI 246 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888877777777788888888899999999999999999999999999999999999888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001980 649 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI 728 (987)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~ 728 (987)
.+...+..++..+..++++|+|.+++..|.++++.+++++.+......++..+......+.++..+++|+.++++.+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 326 (587)
T 3qf4_A 247 VFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAI 326 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888888888888889999999999999999999999999998888899999888899999999999999999876543
Q ss_pred CCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 729 DPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 729 ~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
++.. ...+.++..|.|+|+||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||
T Consensus 327 ~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 404 (587)
T 3qf4_A 327 EEAD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE 404 (587)
T ss_dssp CCCT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS
T ss_pred CCCC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECC
Confidence 2211 111223456789999999999743 45799999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 809 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 809 ~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
+|+++++.+++|++|+||||||.+|++||+|||.++.+..++++++++++.+++++++..+|+|+||.++++|.+|||||
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHH
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eL 968 (987)
|||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||+||++|+|+|+|+|+||
T Consensus 485 rQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el 564 (587)
T 3qf4_A 485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564 (587)
T ss_dssp HHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHHHhhhc
Q 001980 969 VSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 969 l~~~~g~f~~l~~~q~~ 985 (987)
+++ ++.|+++++.|..
T Consensus 565 ~~~-~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 565 LEH-CKPYREIYESQFG 580 (587)
T ss_dssp HHH-CHHHHHHHHHHC-
T ss_pred HhC-CcHHHHHHHHHhc
Confidence 987 7899999988743
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.6e-86 Score=795.43 Aligned_cols=571 Identities=29% Similarity=0.449 Sum_probs=516.8
Q ss_pred chHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001980 405 DGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQH 484 (987)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (987)
...+++++++.++.++.++.++++.++.+++....++++..+++....... ......++.+++++.++..++.++..
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR---FDLLPRYMLILGTIYALTSLLFWLQG 98 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888888888888888888888876543221 12234466677777788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001980 485 YFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVE 564 (987)
Q Consensus 485 ~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (987)
++....+.++..++|.++|++++++|++||++ +++|++++|+++|++.++..+...+..++..++.+++++++++.++
T Consensus 99 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 176 (598)
T 3qf4_B 99 KIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR--TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVN 176 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHH--SCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHH
Q 001980 565 WRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRR 644 (987)
Q Consensus 565 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 644 (987)
|.+++++++++|+++++.....+..++..++.++..++....+.|+++|+++||+|++++.+.++|.+..+...+...+.
T Consensus 177 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 256 (598)
T 3qf4_B 177 VILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKA 256 (598)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888877888878888888889999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001980 645 SLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDR 724 (987)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~ 724 (987)
.....+...+..++..+..++++|+|.+++..|.+++|.+++++.+......++..+......+.++..+++|+.++++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 336 (598)
T 3qf4_B 257 QIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL 336 (598)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888888999999999999999999999888888888899999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceE
Q 001980 725 STRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804 (987)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I 804 (987)
+++.+. +...+.++..|.|+++||+|+|++ +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|
T Consensus 337 ~~~~~~--~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 412 (598)
T 3qf4_B 337 EEEKDD--PDAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412 (598)
T ss_dssp CCCCCC--SSCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE
T ss_pred CCCCCC--CCCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE
Confidence 654322 112223345688999999999964 3469999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 805 ~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
.+||+|+++++.+++|++|++|||||.+|++||+|||.++.+..++++++++++.++++++++.+|+|+||.+|++|.+|
T Consensus 413 ~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~L 492 (598)
T 3qf4_B 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL 492 (598)
T ss_dssp EETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTS
T ss_pred EECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCC
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecC
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt 964 (987)
|||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|+|+
T Consensus 493 SgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 572 (598)
T 3qf4_B 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGK 572 (598)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHhhhc
Q 001980 965 HSELVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 965 ~~eLl~~~~g~f~~l~~~q~~ 985 (987)
|+||+++ +|.|++++..|..
T Consensus 573 ~~~l~~~-~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 573 HDELIQK-RGFYYELFTSQYG 592 (598)
T ss_dssp HHHHHHT-TCHHHHHHHHHHG
T ss_pred HHHHHhC-CCHHHHHHHHHhh
Confidence 9999987 7999999988754
No 6
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.4e-85 Score=789.77 Aligned_cols=572 Identities=31% Similarity=0.460 Sum_probs=510.5
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhh----HHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKT----KEFVFIYIGAGLYAVVAYLIQ 483 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 483 (987)
+++++++.++.++.++.+++++++.+++....++++..+++.............. ..+..+++++.++..++.++.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888888888887777888888888888766533221101111 233444555566677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 484 HYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIV 563 (987)
Q Consensus 484 ~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 563 (987)
.++..+.+.+...++|.++|++++++|++||+. +++|++++|+++|++.++..+...+..++..++.+++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT--SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999985 799999999999999999999988888888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHH
Q 001980 564 EWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR 643 (987)
Q Consensus 564 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~ 643 (987)
+|.+++++++++|+++++.....+..++..++.+...++....+.|+++|+++||+|++++.+.++|.+..+...+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888877778887888888888999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001980 644 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLD 723 (987)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~ 723 (987)
..+.......+...+..+..++++|+|.+++..|.+++|.+++++.+......++..+......+.++..+++|+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888888888888999999999999999999999999998888899999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCce
Q 001980 724 RSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803 (987)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~ 803 (987)
.+++.++.. ...+.++..|.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 765533211 112223456789999999999753 346999999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 001980 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883 (987)
Q Consensus 804 I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 883 (987)
|.+||+|+++++.+++|++++||||||.+|++||+|||.++.+..++++++++++.+++++++.++|+|+||.+|++|.+
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEec
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~G 963 (987)
||||||||+||||||+++|+|||||||||+||+++++.+++.+++..+++|+|+||||++++..||+|+||++|+|+|.|
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHhhh
Q 001980 964 SHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 964 t~~eLl~~~~g~f~~l~~~q~ 984 (987)
+|+||+++ ++.|+++++.|.
T Consensus 558 ~~~el~~~-~~~~~~~~~~q~ 577 (578)
T 4a82_A 558 THRELIAK-QGAYEHLYSIQN 577 (578)
T ss_dssp CHHHHHHT-TSHHHHHHTTTT
T ss_pred CHHHHHhC-CcHHHHHHHhhc
Confidence 99999987 789999998774
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=5.9e-84 Score=778.91 Aligned_cols=575 Identities=34% Similarity=0.529 Sum_probs=492.0
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
+++++.+.++.++.++.++++.++.+++....++++..+++................+..+++++.++..++.+++.++.
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (595)
T 2yl4_A 7 ARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLM 86 (595)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777777777777777777654321111111122334445556666777788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
.+.+.+...++|.++|++++++|++||+. +++|++++|+++|++.++..+...+..++..++.+++++++++.++|.+
T Consensus 87 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 164 (595)
T 2yl4_A 87 QTSGQRIVNRLRTSLFSSILRQEVAFFDK--TRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNL 164 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHH--SCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
++++++.+|+++++.+...+..++..++.++..++....+.|+++|+++||+|++++.+.++|.+..+...+...+....
T Consensus 165 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 244 (595)
T 2yl4_A 165 ATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFA 244 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887777777777778888888888999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR 727 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 727 (987)
..+...+..++..+..++++|+|.+++..|.+++|.+++++.+......++..+......+.++..+++|+.++++.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 324 (595)
T 2yl4_A 245 RAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPK 324 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999986554
Q ss_pred CCCCCCCCCCCCCcccc-EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE
Q 001980 728 IDPDDPDAEPVETIRGE-IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806 (987)
Q Consensus 728 ~~~~~~~~~~~~~~~g~-I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i 806 (987)
.+... ...+..+..|. |+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+
T Consensus 325 ~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 403 (595)
T 2yl4_A 325 LPFNE-GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISL 403 (595)
T ss_dssp SCSSC-SBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEE
T ss_pred cCCCC-CCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEE
Confidence 32211 11111234577 99999999997543457999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCC---CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 001980 807 DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG---ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883 (987)
Q Consensus 807 dG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~---~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 883 (987)
||+|+++++.+++|++|+||||+|.+|++||+|||.++.+. .++++++++++.++++++++++|+|+||++|++|.+
T Consensus 404 ~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~ 483 (595)
T 2yl4_A 404 DGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483 (595)
T ss_dssp TTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCC
T ss_pred CCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCc
Confidence 99999999999999999999999999999999999988765 789999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEec
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~G 963 (987)
||||||||+||||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|+||++|+|+|.|
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 563 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYG 563 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHhhhc
Q 001980 964 SHSELVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 964 t~~eLl~~~~g~f~~l~~~q~~ 985 (987)
+|+||++++++.|+++++.|..
T Consensus 564 ~~~~l~~~~~~~~~~~~~~q~~ 585 (595)
T 2yl4_A 564 KHEELLSKPNGIYRKLMNKQSF 585 (595)
T ss_dssp CSCC------C-----------
T ss_pred CHHHHHhCCChHHHHHHHHhhc
Confidence 9999998668999999988753
No 8
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.7e-86 Score=855.04 Aligned_cols=577 Identities=37% Similarity=0.625 Sum_probs=519.3
Q ss_pred chHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-----------------chhhhhhHHHH
Q 001980 405 DGYFLRLLKLNAP-EWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNP-----------------ASMERKTKEFV 466 (987)
Q Consensus 405 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 466 (987)
...+.+++++..+ .+..++++++++++.++..++++++++.+++.+..... .........|.
T Consensus 32 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1284)
T 3g5u_A 32 AVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYA 111 (1284)
T ss_dssp -CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHH
Confidence 3446666666543 45667778888888888888888888887766532110 00112334577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001980 467 FIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVI 546 (987)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~ 546 (987)
++|++++++..++.+++.+++.+.+.+...++|.++|++++++|++|||+ +++|++++|+++|++.++..++..+..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~--~~~G~l~sr~~~D~~~i~~~~~~~~~~~ 189 (1284)
T 3g5u_A 112 YYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV--HDVGELNTRLTDDVSKINEGIGDKIGMF 189 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS--CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999996 7899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHH
Q 001980 547 LQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKI 626 (987)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~ 626 (987)
+..++.++++++++++++|++++++++++|+++++..+..+..++..++.+...++...++.|+++|+++||+|++|+++
T Consensus 190 ~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~ 269 (1284)
T 3g5u_A 190 FQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKE 269 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHH
Confidence 99999999999999999999999999999999998888888888888888888899999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 627 LSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAP 706 (987)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (987)
.++|.+..+...+...+.....++..++..++.++..++++|+|.+++..|.+++|.+++++.+......++..+...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1284)
T 3g5u_A 270 LERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE 349 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888999999999999999999999999999999998888777777888888888899
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCh
Q 001980 707 EIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGK 786 (987)
Q Consensus 707 ~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGK 786 (987)
.+.++..+++|++++++.+++.++..+...++++.+|.|+|+||+|+|+++++.++|+|+||+|+|||++||||||||||
T Consensus 350 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGK 429 (1284)
T 3g5u_A 350 AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGK 429 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCH
Confidence 99999999999999998766543322222223345789999999999987655679999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhH
Q 001980 787 SSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFV 866 (987)
Q Consensus 787 STL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i 866 (987)
|||+++|+|+|+|++|+|.+||+|+++++++++|++|++|||||.+|++||+|||.++.+++++++++++++.+++++++
T Consensus 430 STl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i 509 (1284)
T 3g5u_A 430 STTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI 509 (1284)
T ss_dssp HHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred hhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh
Q 001980 867 SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR 946 (987)
Q Consensus 867 ~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~ 946 (987)
.++|+|+||.+|++|.+|||||||||||||||+++|+|||||||||+||+++++.|++.+++..+++|+|+||||++++.
T Consensus 510 ~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~ 589 (1284)
T 3g5u_A 510 MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR 589 (1284)
T ss_dssp HHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHT
T ss_pred HhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred ccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhh
Q 001980 947 GVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 947 ~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
+||+|+||++|+|+|.|+|+||+++ ++.|++++..|.
T Consensus 590 ~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 590 NADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQT 626 (1284)
T ss_dssp TCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC
T ss_pred cCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhh
Confidence 9999999999999999999999987 799999987763
No 9
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.7e-83 Score=772.86 Aligned_cols=568 Identities=27% Similarity=0.422 Sum_probs=505.4
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 407 YFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF 486 (987)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (987)
.+++++.+.++.++.+++++++.++.+++....++++..+++....... . ....++..+++++.++..++.++..++
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (582)
T 3b5x_A 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--S-NFLRILPFMILGLMFVRGLSGFASSYC 88 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666777777777777777777778888877776542111 1 111122233556667777888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001980 487 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR 566 (987)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (987)
..+.+.+...++|.++|+++++.|+.||+. +++|++++|+++|++.++..+...+..++..++.+++++++++.++|.
T Consensus 89 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b5x_A 89 LSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 567 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 646 (987)
Q Consensus 567 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (987)
+++++++++|+++++.....+..++..++.+...++....+.|.++|+++||+|++++.+.++|.+..+...+...+..+
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b5x_A 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888777777777777788888888999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 647 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
...+...+..++..+..++++|+|.+++..|.+++|.+++++.+......++..+......+.++..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b5x_A 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE
Q 001980 727 RIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806 (987)
Q Consensus 727 ~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i 806 (987)
+.++ ...+.++..|.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+
T Consensus 327 ~~~~---~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 327 ERDN---GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred cCCC---CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 4321 111122345789999999999643 246999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC-CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 001980 807 DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK-EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 885 (987)
Q Consensus 807 dG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~-~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 885 (987)
||+|+++++.+++|++++||||||.+|++||+|||.++. ++.++++++++++.++++++++++|+|+||.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LS 482 (582)
T 3b5x_A 403 DGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482 (582)
T ss_pred CCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCC
Confidence 999999999999999999999999999999999999987 6788999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 001980 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 886 gGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~ 965 (987)
||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|
T Consensus 483 gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHhhh
Q 001980 966 SELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 966 ~eLl~~~~g~f~~l~~~q~ 984 (987)
+||+++ ++.|+++++.|.
T Consensus 563 ~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b5x_A 563 ADLLAQ-DGAYAQLHRIQF 580 (582)
T ss_pred HHHHhC-CcHHHHHHHHhh
Confidence 999987 789999999874
No 10
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.4e-83 Score=771.66 Aligned_cols=569 Identities=30% Similarity=0.470 Sum_probs=505.2
Q ss_pred hHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 406 GYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHY 485 (987)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (987)
..+++++++.++.++.++.++++.++.+++....++++..+++...... .. ....++..+++++.++..++.++..+
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b60_A 11 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT--DR-SVLLWMPLVVIGLMILRGITSYISSY 87 (582)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST--TH-HHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--ch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777777777777777777766443211 11 11111223355666677788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001980 486 FFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEW 565 (987)
Q Consensus 486 ~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (987)
+..+.+.+...++|.++|++++++|++||+. +++|++++|+++|++.++..+...+..++..++.+++++++++.++|
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b60_A 88 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 165 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999986 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHH
Q 001980 566 RVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRS 645 (987)
Q Consensus 566 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (987)
.+++++++++|+++++.....+..++..++.+...++....+.|+++|+++||+|++++.+.++|.+..+...+...+..
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3b60_A 166 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 245 (582)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888877777777777788888888899999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001980 646 LTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRS 725 (987)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~ 725 (987)
+...+...+..++..+..++++|+|.+++..|.+++|.+++++.+......++..+......+.++..+++|+.++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~ 325 (582)
T 3b60_A 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 325 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEE
Q 001980 726 TRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 805 (987)
Q Consensus 726 ~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~ 805 (987)
++.++ . ..+.++..|.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.
T Consensus 326 ~~~~~-~--~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 401 (582)
T 3b60_A 326 QEKDE-G--KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401 (582)
T ss_dssp CSCCC-C--CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred CCccC-C--CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE
Confidence 54321 1 11122345789999999999642 24699999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC-CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 806 IDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK-EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 806 idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~-~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
+||+|+++++.+++|++++||||||.+|++||+|||.++. ++.++++++++++.++++++++++|+|+||.++++|.+|
T Consensus 402 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~L 481 (582)
T 3b60_A 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481 (582)
T ss_dssp ETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred ECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCC
Confidence 9999999999999999999999999999999999999987 678899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecC
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt 964 (987)
|||||||+||||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+
T Consensus 482 SgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b60_A 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGT 561 (582)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHhhh
Q 001980 965 HSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 965 ~~eLl~~~~g~f~~l~~~q~ 984 (987)
|+||+++ ++.|+++++.|.
T Consensus 562 ~~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b60_A 562 HSELLAQ-HGVYAQLHKMQF 580 (582)
T ss_dssp HHHHHHH-TSSHHHHHHHTC
T ss_pred HHHHHHc-CCHHHHHHHHhc
Confidence 9999987 789999999874
No 11
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.5e-68 Score=634.63 Aligned_cols=199 Identities=25% Similarity=0.360 Sum_probs=168.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.+ +.++
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 5899999999942 3699999999999999999999999999999999999999999986 2469
Q ss_pred EEEcccccc-ccccHHHHhccC-CCC-CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 824 GLVQQEPAL-FAASIFDNIAYG-KEG-ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 824 ~~VpQdp~l-F~gTIreNL~~~-~~~-~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
+|+||++.+ +..|+++|+... ... ...+.+.++++..++.++ .+.++ .+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL-------YDRNV----EDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTT-------TTSBG----GGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchH-------hcCCh----hhCCHHHHHHHHHHHHHHh
Confidence 999999865 678999998643 111 123445666666666443 23333 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeC--CEEEEecChhHHhc
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQD--GRIVEQGSHSELVS 970 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~--G~ive~Gt~~eLl~ 970 (987)
+|++|||||||++||+.+...+.+.|+++. .+.|||+|+|+++.+.. ||||++|++ |++++.|+|++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999874 48999999999999875 899999986 88889999998875
No 12
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.2e-66 Score=634.57 Aligned_cols=197 Identities=22% Similarity=0.350 Sum_probs=157.3
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..+...|++++|++ ..+|+|+||++++|++++|+||||||||||+|+|+| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 35888899999974 358999999999999999999999999999999996 443 4433211 124
Q ss_pred eEEEcCCC-CCch-hcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHHHHHHhc
Q 001980 178 IGLVNQEP-ALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 178 i~~v~Q~~-~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRialARal~ 254 (987)
++|++|++ .++. .|+.||+.+..... .+++.+.++.. |+. ........+||||||||++|||||+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~l-----------gL~~~~~~~~~~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEF-----------GFTDEMIAMPISALSGGWKMKLALARAVL 564 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHT-----------TCCHHHHHSBGGGCCHHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHc-----------CCChhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 78999986 4554 49999998621111 33343333333 442 2345556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEE-EecChHHHHH
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVV-ETGTHEELIA 325 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~ 325 (987)
.+|++|||||||++||+.+++++.+.|++ .|+|+|+|||+++++.. ||+|++|++|+++ ..|+++++.+
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999999988 58999999999999876 8999999999997 6899887653
No 13
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=8e-68 Score=626.12 Aligned_cols=199 Identities=23% Similarity=0.351 Sum_probs=166.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.++++|++++|.+ ..|+++||+|++||++||+|+||||||||+++|.|+++|++|+|.+ +.+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 4899999999942 3699999999999999999999999999999999999999999986 2469
Q ss_pred EEEcccccc-ccccHHHHhccC-CCC-CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 824 GLVQQEPAL-FAASIFDNIAYG-KEG-ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 824 ~~VpQdp~l-F~gTIreNL~~~-~~~-~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
+||||++.. +..|+.+|+... .+. ...+.+.++++..++.+. .+.++ .+||||||||++|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDL-------YDREV----NELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGG-------TTSBG----GGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhh-------hcCCh----hhCCHHHHHHHHHHHHHHh
Confidence 999999976 678999998642 111 123344555555554332 23333 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeC--CEEEEecChhHHhc
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQD--GRIVEQGSHSELVS 970 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~--G~ive~Gt~~eLl~ 970 (987)
+|++|||||||++||+.+...|.+.|+++. .+.|||+|||+++.+.. ||||++|++ |++++.|+|++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999999874 38999999999999875 899999986 78999999998875
No 14
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.4e-65 Score=627.81 Aligned_cols=201 Identities=25% Similarity=0.377 Sum_probs=136.2
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCccHHHHH---------------------HHHHcCCCCC-------ccEEEECCEeC
Q 001980 115 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVV---------------------SLIERFYDPN-------AGHVLLDNVDI 166 (987)
Q Consensus 115 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl---------------------~~l~g~~~~~-------~G~i~~~g~~~ 166 (987)
..+|+||||+|++||+++|+||||||||||+ +++.|+..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3489999999999999999999999999998 8889999998 45556666544
Q ss_pred CCCCHHHHhcceEEEcCCCCC-------------------c-hhcHHHHHhcCCCC-CC--HHH-----HHHHHHHHhHH
Q 001980 167 KTLQLRWLRDQIGLVNQEPAL-------------------F-ATTILENILYGKPE-AT--MAE-----VEAAASAANAH 218 (987)
Q Consensus 167 ~~~~~~~~~~~i~~v~Q~~~l-------------------~-~~tv~eni~~~~~~-~~--~~~-----~~~~~~~~~~~ 218 (987)
.. ..+..++|++|.+.+ + ..|++||+.+.... .. ..+ ..+..+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 32 123456666665432 2 34899999874211 00 001 11111111
Q ss_pred HHHHhCCCCCccc-ccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEc
Q 001980 219 SFITLLPNGYSTQ-VGERGVQLSGGQKQRIAIARAMLKNPK--ILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVA 294 (987)
Q Consensus 219 ~~~~~~~~g~~t~-~~~~g~~LSgGqkqRialARal~~~~~--illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vt 294 (987)
+.++.+ |+... ......+|||||||||+|||||+.+|+ +|||||||++||+.+..++.+.|+++. +|+|+|+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 224444 55433 466778999999999999999999998 999999999999999999999999885 589999999
Q ss_pred CCCCccccCCEEEEE------eCCEEEEecChHHHH
Q 001980 295 HRLSTIRNVDTVAVI------QQGQVVETGTHEELI 324 (987)
Q Consensus 295 H~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~ 324 (987)
|+++.+..||+|++| ++|++++.|+++++.
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999988889999999 899999999888764
No 15
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.9e-65 Score=559.62 Aligned_cols=277 Identities=44% Similarity=0.699 Sum_probs=251.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCC
Q 001980 705 APEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGS 784 (987)
Q Consensus 705 ~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGs 784 (987)
+.++.++..+++|++++++.+++..... ...+.++..|.|+|+||+|+|++ ..++|+||||+|++||++||||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCc
Confidence 3445566778899999988665432211 11122234678999999999964 34699999999999999999999999
Q ss_pred ChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchh
Q 001980 785 GKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHG 864 (987)
Q Consensus 785 GKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~ 864 (987)
|||||+++|+|+|+|++|+|.+||+|+.+++.+.+|++|+||||+|.+|++||+|||.++.+.+++++++++++.+++.+
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~ 171 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHD 171 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred hHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchh
Q 001980 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLST 944 (987)
Q Consensus 865 ~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~t 944 (987)
++..+|+||+|.++++|.+||||||||+||||||+++|+|||||||||+||+.+++.|++.|++..+++|+|+||||+++
T Consensus 172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHH
T ss_pred HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred hhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhhc
Q 001980 945 IRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 945 i~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~~ 985 (987)
+..||+|+||++|+|+|.|+|++|+++ ++.|++||+.|..
T Consensus 252 ~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 252 VVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 999999999999999999999999987 8999999988753
No 16
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.6e-65 Score=600.24 Aligned_cols=199 Identities=20% Similarity=0.263 Sum_probs=166.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.++++|++++|.+ ..|+++||+|++||++||+|+||||||||+++|.|+++|++|+|.++| ..+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 4899999999942 368899999999999999999999999999999999999999999876 468
Q ss_pred EEEcccccc-ccccHHHHhccCCCC---CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 824 GLVQQEPAL-FAASIFDNIAYGKEG---ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 824 ~~VpQdp~l-F~gTIreNL~~~~~~---~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
+++||++.. |..|+++|+...... ...+.+.++++..++.++. +.++ .+||||||||++|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLL-------ESNV----NDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCT-------TSBG----GGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHh-------cCCh----hhCCHHHHHHHHHHHHHH
Confidence 999999864 578999999753221 1233455666666665432 2333 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeC--CEEEEecChhHHh
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQD--GRIVEQGSHSELV 969 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~--G~ive~Gt~~eLl 969 (987)
++|+||||||||++||+.+...|++.|+++. .++|||+|||+++.+.. ||||+||++ |++...++|.++.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999999874 48899999999999876 899999986 6677777776654
No 17
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-64 Score=596.95 Aligned_cols=198 Identities=23% Similarity=0.358 Sum_probs=165.0
Q ss_pred EeEEEECCCCCCccceeeeeEEEeCC-----cEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 748 RHVDFAYPSRPDVVVFKDFNLRIRAG-----QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 748 ~~vsf~Y~~~~~~~vL~~vsl~I~~G-----e~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
++++|+|++. ..+++|+||++++| |++||+|+||||||||+++|.|+.+|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5677888632 35799999999999 7899999999999999999999999999962 21 346
Q ss_pred cEEEccccc-cccccHHHHhccCC--CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 823 IGLVQQEPA-LFAASIFDNIAYGK--EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 823 i~~VpQdp~-lF~gTIreNL~~~~--~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
++++||++. .|.+|+++|+.... .....+...++++..++.++ .+.++ ..||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~----~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-------IDQEV----QHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-------SSSBS----SSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-------hcCCh----hhCCHHHHHHHHHHHHHH
Confidence 999999975 57889999985321 11234555667777776543 23333 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeC--CEEEEecChhHHhcC
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQD--GRIVEQGSHSELVSR 971 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~--G~ive~Gt~~eLl~~ 971 (987)
++|+||||||||++||+.+...+.+.|+++. .++|||+|||+++.+.. ||||+||++ |+++..|+|++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999999864 48999999999999876 899999996 999999999999865
No 18
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.1e-61 Score=578.33 Aligned_cols=330 Identities=43% Similarity=0.623 Sum_probs=300.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001980 5 LGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSII 84 (987)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 84 (987)
...++..++..++.++++|+|++++..|.+++|.+++++.++.....|+..++..+..+.++..|++|+.++++.+++..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 325 (578)
T 4a82_A 246 YSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIK 325 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 34556666777788889999999999999999999999888888889999999999999999999999999998765432
Q ss_pred CCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 001980 85 QDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV 164 (987)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~ 164 (987)
... .....+...+.|+++|++|+|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+
T Consensus 326 ~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 403 (578)
T 4a82_A 326 NGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH 403 (578)
T ss_dssp CCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTE
T ss_pred CCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCE
Confidence 211 111112234679999999999753 346999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 165 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 165 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
|+++++.+++|++|+||||+|++|++||+|||.+|.+..+++++.++++.++++++++.+|+|++|.+|++|.+||||||
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~ 483 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 483 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHH
Confidence 99999999999999999999999999999999999888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
||++|||||+++|+++|||||||+||+++++.+.+.++++.+++|+|+||||++.++.||+|++|++|+|+++|+|+|++
T Consensus 484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~ 563 (578)
T 4a82_A 484 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 563 (578)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHH
Q 001980 325 AKAGAYASLIRF 336 (987)
Q Consensus 325 ~~~~~~~~~~~~ 336 (987)
+.++.|.+++..
T Consensus 564 ~~~~~~~~~~~~ 575 (578)
T 4a82_A 564 AKQGAYEHLYSI 575 (578)
T ss_dssp HTTSHHHHHHTT
T ss_pred hCCcHHHHHHHh
Confidence 998888887643
No 19
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.3e-61 Score=576.27 Aligned_cols=330 Identities=35% Similarity=0.555 Sum_probs=300.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
..++..++..++.++++|+|++++..|.+++|.+++++.+......|+..++..+..+.++..|++|+.++++.+++...
T Consensus 249 ~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 328 (587)
T 3qf4_A 249 ALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEE 328 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCC
Confidence 44556667777888899999999999999999999998888888899999999999999999999999999987654322
Q ss_pred CCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 86 DPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
.. .....+...+.|+++|++|+|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+|
T Consensus 329 ~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~ 406 (587)
T 3qf4_A 329 AD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELD 406 (587)
T ss_dssp CT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSB
T ss_pred CC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEE
Confidence 11 111122335679999999999753 3569999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
+++++.+++|++|+||||+|++|++||+|||.++.+..+++++.++++.+++++++..+|+|++|.++++|.+|||||||
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQ 486 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQ 486 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHH
T ss_pred cccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHH
Confidence 99999999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|++|||||+++|+|+|||||||+||+++++.+.+.++++.+|+|+|+||||++.+..||+|++|++|+|+++|+|+|+++
T Consensus 487 rv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 487 RLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHH
Q 001980 326 KAGAYASLIRFQ 337 (987)
Q Consensus 326 ~~~~~~~~~~~~ 337 (987)
+.+.|.+++..+
T Consensus 567 ~~~~~~~~~~~~ 578 (587)
T 3qf4_A 567 HCKPYREIYESQ 578 (587)
T ss_dssp HCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 989998887654
No 20
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-60 Score=574.45 Aligned_cols=331 Identities=38% Similarity=0.584 Sum_probs=301.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001980 4 GLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSI 83 (987)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~ 83 (987)
+...++..++..++.++++|+|++++..|.+++|.+++++.+......|+..++..+..+.++..|++|+.++++.+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 340 (598)
T 3qf4_B 261 GVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEK 340 (598)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34556677778888889999999999999999999999888888888999999999999999999999999999876543
Q ss_pred CCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 84 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
... .....+...+.|+++|++|+|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 341 ~~~--~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 416 (598)
T 3qf4_B 341 DDP--DAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDG 416 (598)
T ss_dssp CCS--SCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETT
T ss_pred CCC--CCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECC
Confidence 211 11112233467999999999974 34589999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 164 VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 164 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
+|+.+++.+++|++|+||||+|++|++||+|||.++.+..+++++.++++.++++++++.+|+|++|.+|++|.+|||||
T Consensus 417 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 496 (598)
T 3qf4_B 417 IDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQ 496 (598)
T ss_dssp EEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHH
T ss_pred EEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHH
Confidence 99999999999999999999999999999999999988777788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHH
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 323 (987)
|||++|||||+++|+++|||||||+||+++++.+.+.++++.+|+|+|+||||++.++.||+|++|++|+|+++|+|+|+
T Consensus 497 ~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 497 RQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp HHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHH
Q 001980 324 IAKAGAYASLIRFQE 338 (987)
Q Consensus 324 ~~~~~~~~~~~~~~~ 338 (987)
+++++.|.+++..+.
T Consensus 577 ~~~~~~~~~~~~~~~ 591 (598)
T 3qf4_B 577 IQKRGFYYELFTSQY 591 (598)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHh
Confidence 999999998887654
No 21
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3e-59 Score=562.13 Aligned_cols=329 Identities=39% Similarity=0.560 Sum_probs=298.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001980 5 LGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSII 84 (987)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 84 (987)
...++..++..++.++++|+|++++..|.+++|.+++++.++.....|+..+...+..+.++..+++|+.++++.+++..
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b5x_A 250 IADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 34556667777888889999999999999999999999999999999999999999999999999999999998765422
Q ss_pred CCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 001980 85 QDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV 164 (987)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~ 164 (987)
. . ....+...+.|+++|++|+|+++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+
T Consensus 330 ~-~--~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 405 (582)
T 3b5x_A 330 N-G--KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGH 405 (582)
T ss_pred C-C--CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCE
Confidence 1 1 11112224569999999999743 245899999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCC-CCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 165 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK-PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 165 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
|+.+.+..++|++|+||||+|++|++||+|||.++. +..++++++++++.++++++++.+|+|++|.+|++|.+|||||
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred EhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence 999999999999999999999999999999999987 5667788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHH
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 323 (987)
|||++|||||+++|+++|||||||+||+++++.+.+.|+++.+|+|+|+||||++.++.||+|++|++|++++.|+++++
T Consensus 486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b5x_A 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADL 565 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999998779999999999999988999999999999999999999
Q ss_pred HHhhhhHHHHHHHH
Q 001980 324 IAKAGAYASLIRFQ 337 (987)
Q Consensus 324 ~~~~~~~~~~~~~~ 337 (987)
+++.+.|+++++.|
T Consensus 566 ~~~~~~~~~~~~~q 579 (582)
T 3b5x_A 566 LAQDGAYAQLHRIQ 579 (582)
T ss_pred HhCCcHHHHHHHHh
Confidence 99888898887654
No 22
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.8e-59 Score=562.42 Aligned_cols=329 Identities=43% Similarity=0.638 Sum_probs=298.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001980 5 LGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSII 84 (987)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 84 (987)
...++..++..++.++++|+|++++..|.+++|.+++++.+......|+..+...+..+.++..+++|+.++++.+++..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b60_A 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD 329 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 34556667777788888999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 001980 85 QDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV 164 (987)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~ 164 (987)
. .....+...+.|+++|++|+|+++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+
T Consensus 330 ~---~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~ 405 (582)
T 3b60_A 330 E---GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGH 405 (582)
T ss_dssp C---CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTE
T ss_pred C---CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCE
Confidence 1 111112224569999999999742 245899999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCC-CCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 165 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK-PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 165 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
|+.+++..++|++|+||||+|++|++||+|||.++. +..++++++++++.++++++++.+|+|++|.+|++|.+|||||
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq 485 (582)
T 3b60_A 406 DLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485 (582)
T ss_dssp ETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred EccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence 999999999999999999999999999999999987 5667888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHH
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 323 (987)
|||++|||||+++|+++|||||||+||+++++.+.+.++++.+|+|+|+||||++.++.||+|++|++|++++.|+++|+
T Consensus 486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b60_A 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 565 (582)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999998789999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHH
Q 001980 324 IAKAGAYASLIRFQ 337 (987)
Q Consensus 324 ~~~~~~~~~~~~~~ 337 (987)
+++++.|++++..|
T Consensus 566 ~~~~~~~~~~~~~q 579 (582)
T 3b60_A 566 LAQHGVYAQLHKMQ 579 (582)
T ss_dssp HHHTSSHHHHHHHT
T ss_pred HHcCCHHHHHHHHh
Confidence 99888898887654
No 23
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.7e-59 Score=564.01 Aligned_cols=331 Identities=49% Similarity=0.730 Sum_probs=286.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
..++..++..++.++++|+|++++..|.+++|.+++++.+......|+..+...+..+.++..+++|+.++++.+++...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 327 (595)
T 2yl4_A 248 FFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPF 327 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCC
Confidence 44556666777788889999999999999999999988888888899999999999999999999999999987654321
Q ss_pred CCCCCCcCCCCCcc-EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 001980 86 DPTNGRCLDEVNGN-IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV 164 (987)
Q Consensus 86 ~~~~~~~~~~~~~~-i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~ 164 (987)
. ......+...+. |+++|++|+|+++++.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+
T Consensus 328 ~-~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~ 406 (595)
T 2yl4_A 328 N-EGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGH 406 (595)
T ss_dssp S-CSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTE
T ss_pred C-CCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCE
Confidence 1 111111123456 99999999997543356999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCCh
Q 001980 165 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSG 241 (987)
Q Consensus 165 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg 241 (987)
|+.+++..++|++|+||||+|++|++||+|||.++.+. .++++++++++.++++++++.+|+|++|.+|++|.+|||
T Consensus 407 ~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSg 486 (595)
T 2yl4_A 407 DIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSG 486 (595)
T ss_dssp ETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCH
T ss_pred EhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCH
Confidence 99999999999999999999999999999999998765 567889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChH
Q 001980 242 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 242 GqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~ 321 (987)
|||||++|||||+++|+++|||||||+||+++++.+.+.++++.+++|+|+||||++.++.||+|++|++|++++.|+++
T Consensus 487 Gq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 566 (595)
T 2yl4_A 487 GQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHE 566 (595)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSC
T ss_pred HHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999987799999999999999889999999999999999999
Q ss_pred HHHHh-hhhHHHHHHHH
Q 001980 322 ELIAK-AGAYASLIRFQ 337 (987)
Q Consensus 322 ~l~~~-~~~~~~~~~~~ 337 (987)
|++++ ++.|.+++..+
T Consensus 567 ~l~~~~~~~~~~~~~~q 583 (595)
T 2yl4_A 567 ELLSKPNGIYRKLMNKQ 583 (595)
T ss_dssp C------C---------
T ss_pred HHHhCCChHHHHHHHHh
Confidence 99884 77888776554
No 24
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6.9e-60 Score=515.69 Aligned_cols=277 Identities=45% Similarity=0.675 Sum_probs=248.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCC
Q 001980 59 NLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSG 138 (987)
Q Consensus 59 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sG 138 (987)
.+..++++.++++|++++++.+++..... .....+...+.|+++||+|+|++ ..++|+|+||+|++||+++|+||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSC
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCC
Confidence 34556778899999999998755432111 11111223457999999999974 2459999999999999999999999
Q ss_pred ccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHH
Q 001980 139 SGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAH 218 (987)
Q Consensus 139 sGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~ 218 (987)
||||||+++|+|+++|++|+|.++|+++..++..++|++|+||||+|++|++||+|||.++.+....++++++++.+++.
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999998877888999999999999
Q ss_pred HHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCC
Q 001980 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 298 (987)
Q Consensus 219 ~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~ 298 (987)
+++..+|+|++|.++++|.+|||||||||+|||||+++|+|||||||||+||+.++..+++.|.++.+++|+|+||||++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred ccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHHHH
Q 001980 299 TIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQE 338 (987)
Q Consensus 299 ~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 338 (987)
.+..||+|++|++|+|++.|+++++++..+.|..++..+.
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~ 290 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQ 290 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHH
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHH
Confidence 9988999999999999999999999999999999887664
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=3.6e-55 Score=467.42 Aligned_cols=240 Identities=47% Similarity=0.769 Sum_probs=226.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
..|+++||+++|++. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 369999999999421 2469999999999999999999999999999999999999999999999999999998889999
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
|+||||+|.+|++|++|||.++.+..++++++++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876666788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHh
Q 001980 903 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~ 982 (987)
++||||||||+||+.+++.+++.|++..+++|||+|||+++.+..||+|++|++|++++.|+++++++.+.+.|++++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999999999999999999999999877899999999999998899999999999999999999998767899999876
Q ss_pred h
Q 001980 983 Q 983 (987)
Q Consensus 983 q 983 (987)
|
T Consensus 245 ~ 245 (247)
T 2ff7_A 245 Q 245 (247)
T ss_dssp H
T ss_pred h
Confidence 5
No 26
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=7.5e-54 Score=460.85 Aligned_cols=241 Identities=43% Similarity=0.753 Sum_probs=224.9
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
+.|+++||+|+|++....++|+|+||+|++||++||+||||||||||+++|.|+++| +|+|.+||.|+.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999643224699999999999999999999999999999999999987 8999999999998888889999
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
|+||||+|.+|++|++|||.++....+++++.++++.+++.+++..+|+++++.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999876556778899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHh
Q 001980 903 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~ 982 (987)
+|||||||||+||+.+++.+++.|++..+++|+|+|||+++.+..||+|++|++|++++.|+|+++++. .+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHh
Confidence 999999999999999999999999998778999999999999988999999999999999999999876 6889999987
Q ss_pred hhc
Q 001980 983 QHH 985 (987)
Q Consensus 983 q~~ 985 (987)
|..
T Consensus 254 ~~~ 256 (260)
T 2ghi_A 254 QSG 256 (260)
T ss_dssp HHC
T ss_pred hhh
Confidence 743
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.8e-53 Score=458.84 Aligned_cols=241 Identities=39% Similarity=0.687 Sum_probs=222.0
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhc
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~ 821 (987)
.+.|+++||+++|++..+.++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35799999999996422246999999999999999999999999999999999999999999999999999888888999
Q ss_pred ccEEEccccccccccHHHHhccCCCCCCH-HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 822 KIGLVQQEPALFAASIFDNIAYGKEGATE-AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 822 ~i~~VpQdp~lF~gTIreNL~~~~~~~sd-~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
+|+||||+|.+|.+|++|||.++.+...+ +++.++++..++.+++..+|.|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999987654444 67788888999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~ 978 (987)
+|+|||||||||+||+.+...+.+.|++..+ ++|||+|||+++.+..||+|++|++|+|++.|+++++++. .+.|.+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 252 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRS 252 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHH
Confidence 9999999999999999999999999998754 8999999999999988999999999999999999999876 688999
Q ss_pred HHHhh
Q 001980 979 LLQLQ 983 (987)
Q Consensus 979 l~~~q 983 (987)
+++.+
T Consensus 253 ~~~~~ 257 (271)
T 2ixe_A 253 MVEAL 257 (271)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 98766
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=7.3e-54 Score=457.28 Aligned_cols=236 Identities=44% Similarity=0.764 Sum_probs=221.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 246999999999999999999999999999999999999999999999999999888778899999
Q ss_pred EEccccccccccHHHHhccC-CCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC
Q 001980 825 LVQQEPALFAASIFDNIAYG-KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 903 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~-~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ 903 (987)
||||+|.+|.+|++|||.++ .+..++++++++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987 45567888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhh
Q 001980 904 ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983 (987)
Q Consensus 904 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q 983 (987)
+||||||||+||+.+.+.+.+.|++..+++|||+|||+++.+..||+|++|++|++++.|+|++++++ .+.|.+++..+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~~ 238 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHHhh
Confidence 99999999999999999999999987788999999999999988999999999999999999999876 57788888765
No 29
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.1e-52 Score=511.73 Aligned_cols=214 Identities=25% Similarity=0.383 Sum_probs=160.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHH-HhccCC-------C---------------
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL-IERFYD-------P--------------- 799 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~l-L~rl~~-------p--------------- 799 (987)
..|+++|+++ .+|+||||+|++||++||+|+||||||||++. |.++.. |
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 3599999986 15999999999999999999999999999996 765531 2
Q ss_pred ---CCc-------eEEECCccCCCCCH----------HHHhcccEEEccc------------------------------
Q 001980 800 ---TAG-------KVMIDGKDIRRLNL----------KSLRLKIGLVQQE------------------------------ 829 (987)
Q Consensus 800 ---~~G-------~I~idG~di~~i~l----------~~lR~~i~~VpQd------------------------------ 829 (987)
.+| .|.+||.++..-+. +.+|..++.+|++
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 356 78999998865432 4455544444431
Q ss_pred -cccc-------------------------cccHHHHhcc--------CCCCCCHHHHHHHHHHcCchhhHhhCCCcCCC
Q 001980 830 -PALF-------------------------AASIFDNIAY--------GKEGATEAEVVEAARAANVHGFVSALPNAYKT 875 (987)
Q Consensus 830 -p~lF-------------------------~gTIreNL~~--------~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt 875 (987)
-.++ .-||.||+.+ .......+++.++++..++...
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~---------- 722 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYL---------- 722 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTS----------
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcc----------
Confidence 1111 1245555532 2111111223344444443211
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEE
Q 001980 876 PVGERGVQLSGGQKQRIAIARAVLKN---PAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCI 951 (987)
Q Consensus 876 ~vge~G~~LSgGQrQrlaLARAllr~---p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~I 951 (987)
.++.....||||||||++|||||+++ |+||||||||++||+.+.+.|.+.|+++. +|.|||+|+|+++.+..||+|
T Consensus 723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDri 802 (842)
T 2vf7_A 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWV 802 (842)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEE
Confidence 23555668999999999999999996 69999999999999999999999999875 689999999999999889999
Q ss_pred EEE------eCCEEEEecChhHHhcCCCc
Q 001980 952 GVV------QDGRIVEQGSHSELVSRPDG 974 (987)
Q Consensus 952 ivl------~~G~ive~Gt~~eLl~~~~g 974 (987)
++| ++|+|++.|+|+++++.+.+
T Consensus 803 i~L~p~~g~~~G~Iv~~g~~~el~~~~~~ 831 (842)
T 2vf7_A 803 LDIGPGAGEDGGRLVAQGTPAEVAQAAGS 831 (842)
T ss_dssp EEECSSSGGGCCSEEEEECHHHHTTCTTC
T ss_pred EEECCCCCCCCCEEEEEcCHHHHHhCchh
Confidence 999 69999999999999987544
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.1e-52 Score=441.97 Aligned_cols=237 Identities=44% Similarity=0.770 Sum_probs=218.3
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..|+++|++|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 469999999999421 2458999999999999999999999999999999999999999999999999998888888889
Q ss_pred eEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 178 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 178 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|+||||+|.+|+.||+||+.++.+....+++.++++..++.+++..+|.|+++.+++++.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999889999999986555567788888899999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh-hhhHHHHHH
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK-AGAYASLIR 335 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 335 (987)
+++||||||++||+.+++.+.+.|+++.+|+|+|+|||+++.+..||+|++|++|++++.|+++++.+. .+.|..++.
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 999999999999999999999999988778999999999999888999999999999999999999876 667766654
No 31
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.4e-52 Score=468.07 Aligned_cols=238 Identities=23% Similarity=0.414 Sum_probs=223.2
Q ss_pred CCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH
Q 001980 739 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 818 (987)
Q Consensus 739 ~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~ 818 (987)
++..+.|+++||+++|+.. +.++|+||||+|++||.++|+||||||||||+++|.|+++ ++|+|.+||.|+.+++.+.
T Consensus 14 ~~~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp SSSSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 4556789999999999633 3469999999999999999999999999999999999998 8999999999999999999
Q ss_pred HhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHH
Q 001980 819 LRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898 (987)
Q Consensus 819 lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAl 898 (987)
+|++|+||||++.+|.+|+++|+.+.. ...+++++++++.+++.+++.+.|.++++.++++|.+||||||||+||||||
T Consensus 92 ~rr~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp HHHTEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred HhCCEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998543 4578899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001980 899 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978 (987)
Q Consensus 899 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~ 978 (987)
+++|+|||||||||+||+.+...+++.|++..+++|+|+|||+++.+..||||+||++|+|++.|+|+++++++...|..
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 99999999999999999999999999999877789999999999999889999999999999999999999998877765
Q ss_pred H
Q 001980 979 L 979 (987)
Q Consensus 979 l 979 (987)
-
T Consensus 251 ~ 251 (390)
T 3gd7_A 251 G 251 (390)
T ss_dssp H
T ss_pred h
Confidence 4
No 32
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-51 Score=502.38 Aligned_cols=219 Identities=27% Similarity=0.414 Sum_probs=165.4
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHH---------HHHhccCCCC------C------
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVI---------ALIERFYDPT------A------ 801 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~---------~lL~rl~~p~------~------ 801 (987)
+.+++++++ ...|+||||+|++|+.+||+|+||||||||+ +++.+...+. +
T Consensus 588 ~~l~v~~~~--------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~ 659 (916)
T 3pih_A 588 ASLKIKGVR--------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENID 659 (916)
T ss_dssp SEEEEEEEC--------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCC
T ss_pred ceEEEeeec--------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhcccccccccccccccccccc
Confidence 357777663 1369999999999999999999999999997 3444433332 2
Q ss_pred ceEEECCccCCCCCH----------HHHh-------------------------------cccEEEccccccc-------
Q 001980 802 GKVMIDGKDIRRLNL----------KSLR-------------------------------LKIGLVQQEPALF------- 833 (987)
Q Consensus 802 G~I~idG~di~~i~l----------~~lR-------------------------------~~i~~VpQdp~lF------- 833 (987)
+.|.+|+.++...+. +.+| +..++++|+..++
T Consensus 660 ~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c 739 (916)
T 3pih_A 660 KMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVEC 739 (916)
T ss_dssp EEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEEC
T ss_pred ceEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeec
Confidence 246677666643321 1112 2356777776554
Q ss_pred --------------------------cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 834 --------------------------AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 834 --------------------------~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
..|+++|+.+.......++..++++.+++.. ..+++.+.+||||
T Consensus 740 ~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~----------~~lgq~~~~LSGG 809 (916)
T 3pih_A 740 DVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGY----------VKLGQPATTLSGG 809 (916)
T ss_dssp TTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGG----------SBTTCCSTTCCHH
T ss_pred ccccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCch----------hhccCCccCCCHH
Confidence 3467777776543333345566666666632 2356677889999
Q ss_pred HHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEE------eCC
Q 001980 888 QKQRIAIARAVLKNP---AILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVV------QDG 957 (987)
Q Consensus 888 QrQrlaLARAllr~p---~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl------~~G 957 (987)
||||++|||||+++| +||||||||++||+.+.+.+++.|+++. +|+|||+|+|+++.+..||+|++| ++|
T Consensus 810 ErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G 889 (916)
T 3pih_A 810 EAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGG 889 (916)
T ss_dssp HHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCC
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCC
Confidence 999999999999876 7999999999999999999999999875 589999999999999999999999 899
Q ss_pred EEEEecChhHHhcCCCchHHHH
Q 001980 958 RIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 958 ~ive~Gt~~eLl~~~~g~f~~l 979 (987)
+|++.|+|+++++++++...++
T Consensus 890 ~Iv~~Gtpeel~~~~~syt~~~ 911 (916)
T 3pih_A 890 YIVATGTPEEIAKNPHSYTGRF 911 (916)
T ss_dssp EEEEEESHHHHHSCTTCHHHHH
T ss_pred EEEEEcCHHHHHhCCchHHHHH
Confidence 9999999999998865433333
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.9e-51 Score=439.68 Aligned_cols=239 Identities=44% Similarity=0.743 Sum_probs=218.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..|+++|++|+|++....++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++...+...++++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 359999999999753224589999999999999999999999999999999999987 8999999999988888888889
Q ss_pred eEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 178 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 178 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|+|++|+|.+|+.||+||+.++......+++.++++.+++.+++..+|+|++|.+++++.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999889999999976544566777888888888888899999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHHH
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 337 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 337 (987)
++|||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+..+.|..++..+
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 254 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQ 254 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHhh
Confidence 99999999999999999999999999877899999999999988899999999999999999999988777777766544
No 34
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=7e-51 Score=440.09 Aligned_cols=238 Identities=40% Similarity=0.718 Sum_probs=214.6
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..|+++|++|+|++..+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999974222458999999999999999999999999999999999999999999999999988877778889
Q ss_pred eEEEcCCCCCchhcHHHHHhcCCCCCCH-HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPALFATTILENILYGKPEATM-AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|+||+|+|.+|+.||+|||.++.+.... +++.+++...++.++++.+|.|+++.+++++.+|||||||||+|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999988999999998653333 556666667777888999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI 334 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 334 (987)
|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+..||+|++|++|++++.|+++++.+..+.|..++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 254 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHH
Confidence 999999999999999999999999999853 899999999999888899999999999999999999988777777665
Q ss_pred H
Q 001980 335 R 335 (987)
Q Consensus 335 ~ 335 (987)
.
T Consensus 255 ~ 255 (271)
T 2ixe_A 255 E 255 (271)
T ss_dssp H
T ss_pred H
Confidence 4
No 35
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-51 Score=437.17 Aligned_cols=233 Identities=48% Similarity=0.744 Sum_probs=212.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 245899999999999999999999999999999999999999999999999998776666788899
Q ss_pred EEcCCCCCchhcHHHHHhcC-CCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 180 LVNQEPALFATTILENILYG-KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
|+||+|.+|+.||+|||.++ .+....+++.++++..++.+++..+|.|+++.+++++.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999989999999997 44455677888888888888889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHH
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI 334 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 334 (987)
++||||||++||+.+++.+.+.|+++.+|+|+|++||+++.+..||+|++|++|++++.|+++++.+....|..++
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 235 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence 9999999999999999999999998877899999999999887899999999999999999999987665565554
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6.2e-50 Score=424.62 Aligned_cols=226 Identities=34% Similarity=0.520 Sum_probs=204.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| ++
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 34699999999999999999999999999999999999999999999999 49
Q ss_pred EEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC
Q 001980 824 GLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 903 (987)
Q Consensus 824 ~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ 903 (987)
+||||+|.+|+.|++|||.++.. ..+++..++++.+++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998653 33445677788888888888889999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHH---HHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHH
Q 001980 904 ILLLDEATSALDAESECVLQEALE---RLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 904 ILlLDEaTS~LD~~te~~I~~~l~---~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~ 980 (987)
|||||||||+||+.++..+.+.|. +..+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.+++
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 226 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFL 226 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHH
Confidence 999999999999999999999994 33468999999999999888999999999999999999999886 78899999
Q ss_pred Hhhhc
Q 001980 981 QLQHH 985 (987)
Q Consensus 981 ~~q~~ 985 (987)
..|..
T Consensus 227 ~~~~~ 231 (237)
T 2cbz_A 227 RTYAS 231 (237)
T ss_dssp HHTCC
T ss_pred HHHHh
Confidence 88743
No 37
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.3e-49 Score=418.27 Aligned_cols=222 Identities=29% Similarity=0.458 Sum_probs=199.9
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
+.|+++||+++|+++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 34699999999999999999999999999999999999999999999998 4
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
|+||||+|.+|++|++||+.++.. ..+....++++.+++.+++..+|.+.++++++.+.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998643 3455566778888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHH
Q 001980 903 AILLLDEATSALDAESECVLQEAL-ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~l-~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~ 980 (987)
++||||||||+||+.+++.+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|++++++++ .+.|.+++
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 227 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSKL 227 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHh
Confidence 999999999999999999999974 555568999999999999888999999999999999999999876 45676654
No 38
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.4e-48 Score=412.36 Aligned_cols=223 Identities=33% Similarity=0.540 Sum_probs=198.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++|+|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 24589999999999999999999999999999999999999999999998 59
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
+|++|+|++++.||+|||.++... ..+...++.+.+++.+.+..+|.|++|.+++++.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999888999999997542 2234455566666667788889999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHH---hhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHH
Q 001980 259 ILLLDEATSALDAGSESIVQEALD---RLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 335 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~---~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 335 (987)
++||||||++||+.++..+.+.+. ++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+..+.|..++.
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 227 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHH
Confidence 999999999999999999999984 44458999999999999888999999999999999999999887777776654
Q ss_pred H
Q 001980 336 F 336 (987)
Q Consensus 336 ~ 336 (987)
.
T Consensus 228 ~ 228 (237)
T 2cbz_A 228 T 228 (237)
T ss_dssp H
T ss_pred H
Confidence 3
No 39
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.2e-48 Score=433.24 Aligned_cols=226 Identities=31% Similarity=0.539 Sum_probs=196.8
Q ss_pred ccEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---
Q 001980 743 GEIELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS--- 818 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~--- 818 (987)
.-|+++||+++|+.+. ..++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+..++.+.
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3699999999996432 246999999999999999999999999999999999999999999999999999998765
Q ss_pred HhcccEEEccccccccc-cHHHHhccCC--CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 819 LRLKIGLVQQEPALFAA-SIFDNIAYGK--EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 819 lR~~i~~VpQdp~lF~g-TIreNL~~~~--~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
+|++|+||||++.+|.. ||+||+.++. ...+ ++.+.++++.+++.++..+. ..+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~-----------~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY-----------PSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC-----------TTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHH
Confidence 47899999999998865 9999998652 1122 23467788888887654433 34799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
++|||||+.+|+|||||||||+||+.+...|++.|++.. .|+|||+|||+++.+.. ||||+||++|+|++.|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999875 38999999999999876 999999999999999999999
Q ss_pred hcCCCchHHHH
Q 001980 969 VSRPDGAYSRL 979 (987)
Q Consensus 969 l~~~~g~f~~l 979 (987)
+.++...|.+-
T Consensus 252 ~~~p~~~~~~~ 262 (366)
T 3tui_C 252 FSHPKTPLAQK 262 (366)
T ss_dssp HSSCCSHHHHH
T ss_pred HhCCCcHHHHH
Confidence 98877666543
No 40
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-48 Score=437.22 Aligned_cols=228 Identities=26% Similarity=0.414 Sum_probs=212.0
Q ss_pred CccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc
Q 001980 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 176 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 176 (987)
...|+++|++|+|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+...+++
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 3569999999999632 3458999999999999999999999999999999999998 9999999999999999988889
Q ss_pred ceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 177 QIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
+|+||+|++.+|+.||+||+.+... ...+++.++++.+++.+++...|.++++.+++.|.+|||||||||+|||||+++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~~-~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNAA-HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTCC-SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCcccCccCHHHHhhhccc-cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999986433 456788899999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhh
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
|++||||||||+||+.++..+.+.|+++..++|+|+|||+++.+..||||++|++|+|++.|++++++...
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999887789999999999988889999999999999999999998754
No 41
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.4e-48 Score=409.40 Aligned_cols=220 Identities=25% Similarity=0.425 Sum_probs=194.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..|+++|++|+|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 359999999999632 24589999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 178 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 178 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|+|+||+|++|+.||+||+.++... ...+..+.++.+++.+.+..+|.++++.+++++.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSCC-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCCc-ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999999989999999997532 233455566667777888889999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHH-HhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHH
Q 001980 258 KILLLDEATSALDAGSESIVQEAL-DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYAS 332 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 332 (987)
+++||||||++||+.+++.+.+.+ .++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+..+.|..
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 225 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSS 225 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHH
Confidence 999999999999999999999874 555568999999999998877999999999999999999998765444433
No 42
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=5.8e-48 Score=468.62 Aligned_cols=211 Identities=24% Similarity=0.371 Sum_probs=156.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh-ccC----C---CCCc-------------
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE-RFY----D---PTAG------------- 802 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~-rl~----~---p~~G------------- 802 (987)
.++++|++. .+|+||||+|++||.+||+|+||||||||+++|+ +.. . +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 589999852 2699999999999999999999999999999854 221 1 1233
Q ss_pred eEEECCccCCCCC---H-------HHHh---------cccEEEcccccc---------------------c---------
Q 001980 803 KVMIDGKDIRRLN---L-------KSLR---------LKIGLVQQEPAL---------------------F--------- 833 (987)
Q Consensus 803 ~I~idG~di~~i~---l-------~~lR---------~~i~~VpQdp~l---------------------F--------- 833 (987)
.|.+||.++..-+ + +.+| +.++|+||...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4889998885322 1 1222 335777775321 0
Q ss_pred -------------------------cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCC-ccCCCCCCCChh
Q 001980 834 -------------------------AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT-PVGERGVQLSGG 887 (987)
Q Consensus 834 -------------------------~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt-~vge~G~~LSgG 887 (987)
..|+.+|+.+........+..++++..+ ++. ..+.....||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~g-----------L~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVG-----------LGYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTT-----------CSSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcC-----------CCcccccCchhhCCHH
Confidence 1245555554321111112233444433 333 345556689999
Q ss_pred HHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEE------eCC
Q 001980 888 QKQRIAIARAVLKNP---AILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVV------QDG 957 (987)
Q Consensus 888 QrQrlaLARAllr~p---~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl------~~G 957 (987)
||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. +|.|||+|+|+++.+..||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999999875 589999999999999889999999 789
Q ss_pred EEEEecChhHHhcCCC
Q 001980 958 RIVEQGSHSELVSRPD 973 (987)
Q Consensus 958 ~ive~Gt~~eLl~~~~ 973 (987)
+|++.|+|+++++.+.
T Consensus 930 ~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 930 QIVAVGTPEEVAEVKE 945 (972)
T ss_dssp SEEEEESHHHHHTCTT
T ss_pred EEEEecCHHHHHhCch
Confidence 9999999999987644
No 43
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.3e-48 Score=417.48 Aligned_cols=215 Identities=28% Similarity=0.522 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC--CCCHHHHhc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSLRL 821 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~l~~lR~ 821 (987)
.|+++||+++|++. .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 49999999999643 35999999999999999999999999999999999999999999999999994 344567899
Q ss_pred ccEEEcccc--ccccccHHHHhccCC--CCCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 822 KIGLVQQEP--ALFAASIFDNIAYGK--EGATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 822 ~i~~VpQdp--~lF~gTIreNL~~~~--~~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
+|+||||+| .+|..|++||+.++. ...+. +.+.++++.+++.++... ...+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDK-----------PTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------CcccCCHHHHHHHH
Confidence 999999998 578899999998652 12233 346677888887655332 23469999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||+.+|++||||||||+||+.+...+.+.|+++. +|+|||+|||+++.+.. ||||++|++|++++.|+++++++
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999999875 38999999999999865 89999999999999999999986
Q ss_pred C
Q 001980 971 R 971 (987)
Q Consensus 971 ~ 971 (987)
+
T Consensus 234 ~ 234 (275)
T 3gfo_A 234 E 234 (275)
T ss_dssp H
T ss_pred C
Confidence 5
No 44
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.4e-48 Score=410.67 Aligned_cols=215 Identities=31% Similarity=0.465 Sum_probs=182.5
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH----
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL---- 819 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l---- 819 (987)
|+++||+++|+.+. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+..++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2369999999999999999999999999999999999999999999999999999987764
Q ss_pred hcccEEEccccccccc-cHHHHhccCC-----CCCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 820 RLKIGLVQQEPALFAA-SIFDNIAYGK-----EGATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 820 R~~i~~VpQdp~lF~g-TIreNL~~~~-----~~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
|++|+||||+|.+|.. |++||+.++. ...+. +++.++++.+++.+.. .+ .....||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~----~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF------AN----HKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG------TT----CCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh------hh----CChhhCCHHHH
Confidence 4579999999999986 9999997631 12222 3456667777665432 12 23457999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~e 967 (987)
||++|||||+++|++||||||||+||+.+...+.+.|++..+ ++|||+|||+++.+..||+|++|++|+|++.+++++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999998753 899999999999887899999999999999998877
Q ss_pred Hh
Q 001980 968 LV 969 (987)
Q Consensus 968 Ll 969 (987)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 64
No 45
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.8e-47 Score=412.60 Aligned_cols=221 Identities=27% Similarity=0.475 Sum_probs=188.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC--CCHHHHhc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT--LQLRWLRD 176 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~ 176 (987)
.|+++|++|+|++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...+++
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 58999999999743 348999999999999999999999999999999999999999999999999852 23456788
Q ss_pred ceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 177 QIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 177 ~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
+||||||+| .+|..||+||+.++... ...++..+.+ .+.++.+ |+.....+.+.+||||||||++||||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRV-----DNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHH-----HHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhcCCcccCCHHHHHHHHHHHH
Confidence 999999998 57778999999986321 2222222211 2334444 66666778888999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhhh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAG 328 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 328 (987)
|+.+|++||||||||+||+.+++.+.+.|+++. + |+|+|+|||+++.+.. ||+|++|++|+++++|++++++....
T Consensus 158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~ 236 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 236 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCHH
Confidence 999999999999999999999999999999885 3 8999999999999875 99999999999999999999876543
No 46
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.4e-47 Score=424.59 Aligned_cols=224 Identities=33% Similarity=0.533 Sum_probs=190.4
Q ss_pred CccEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH--
Q 001980 97 NGNIEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-- 173 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-- 173 (987)
...|+++|++++|+... ...+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++...
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 34699999999997432 246899999999999999999999999999999999999999999999999999887654
Q ss_pred -HhcceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 174 -LRDQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 174 -~~~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
+|++||||||++.+|+. ||+||+.++.. ....++..+.. .+.++.+ |+.......+.+|||||||||+|
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v-----~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaI 174 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV-----TELLSLV--GLGDKHDSYPSNLSGGQKQRVAI 174 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHH-----HHHHHHH--TCGGGTTCCTTTSCHHHHHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCchHhcCChhhCCHHHHHHHHH
Confidence 46789999999999876 99999998632 11222222111 1223333 66666778889999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||||+.+|++||||||||+||+.+++.+.+.|+++. .|.|+|+|||+++.+.. ||||++|++|+++++|++++++..
T Consensus 175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 175 ARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999999885 38999999999999876 999999999999999999999865
Q ss_pred h
Q 001980 327 A 327 (987)
Q Consensus 327 ~ 327 (987)
.
T Consensus 255 p 255 (366)
T 3tui_C 255 P 255 (366)
T ss_dssp C
T ss_pred C
Confidence 3
No 47
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=2.7e-46 Score=455.84 Aligned_cols=211 Identities=23% Similarity=0.350 Sum_probs=153.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh-c----cCC---CCCce------------
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE-R----FYD---PTAGK------------ 803 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~-r----l~~---p~~G~------------ 803 (987)
.++++|++. .+|+||||+|++||++||+|+||||||||+++|+ + .+. +..|.
T Consensus 647 ~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 647 QLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp EEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred eEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 589999852 2699999999999999999999999999999853 2 221 22343
Q ss_pred -EEECCccCCCCC---H-------HHHh---------cccEEEcccccc---------------------c---------
Q 001980 804 -VMIDGKDIRRLN---L-------KSLR---------LKIGLVQQEPAL---------------------F--------- 833 (987)
Q Consensus 804 -I~idG~di~~i~---l-------~~lR---------~~i~~VpQdp~l---------------------F--------- 833 (987)
|.+||.++..-+ + +.+| +..+|+||...+ |
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 566776664221 1 1222 345777775321 0
Q ss_pred -------------------------cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCC-ccCCCCCCCChh
Q 001980 834 -------------------------AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT-PVGERGVQLSGG 887 (987)
Q Consensus 834 -------------------------~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt-~vge~G~~LSgG 887 (987)
..|+.+|+.+........+..++++..++ .. ..+.....||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~lgL-----------~~~~l~~~~~~LSGG 867 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHRYLRTLVDVGL-----------GYVRLGQPAPTLSGG 867 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCHHHHHHHHHHHHTTG-----------GGSBTTCCGGGSCHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcchHHHHHHHHHHHcCC-----------CcccccCccccCCHH
Confidence 12344454433211111222334444443 22 345556689999
Q ss_pred HHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEE------eCC
Q 001980 888 QKQRIAIARAVLKNP---AILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVV------QDG 957 (987)
Q Consensus 888 QrQrlaLARAllr~p---~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl------~~G 957 (987)
||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. .|.|||+|+|+++.+..||+|++| ++|
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G 947 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGG 947 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCS
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCC
Confidence 999999999999875 9999999999999999999999999875 589999999999999889999999 689
Q ss_pred EEEEecChhHHhcCCC
Q 001980 958 RIVEQGSHSELVSRPD 973 (987)
Q Consensus 958 ~ive~Gt~~eLl~~~~ 973 (987)
+|++.|+|+++++.+.
T Consensus 948 ~Iv~~G~~~el~~~~~ 963 (993)
T 2ygr_A 948 TVVAQGTPEDVAAVPA 963 (993)
T ss_dssp EEEEEECHHHHHHCTT
T ss_pred EEEEecCHHHHHhCCH
Confidence 9999999999988744
No 48
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=7.4e-48 Score=408.12 Aligned_cols=217 Identities=32% Similarity=0.464 Sum_probs=181.0
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH----
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL---- 174 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---- 174 (987)
|+++|++|+|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2458999999999999999999999999999999999999999999999999998887543
Q ss_pred hcceEEEcCCCCCchh-cHHHHHhcCCC-----CCCHHHHHHHHHHHhHHHHHHhCCCCCccc-ccCCCCCCChHHHHHH
Q 001980 175 RDQIGLVNQEPALFAT-TILENILYGKP-----EATMAEVEAAASAANAHSFITLLPNGYSTQ-VGERGVQLSGGQKQRI 247 (987)
Q Consensus 175 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~-~~~~g~~LSgGqkqRi 247 (987)
+++||||+|+|.+++. ||+||+.++.. ....++..+. +.+.++.+ |+... ..+.+.+||||||||+
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgGq~QRv 154 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR-----ALECLKMA--ELEERFANHKPNQLSGGQQQRV 154 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHH-----HHHHHHHT--TCCGGGTTCCGGGSCHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHH-----HHHHHHHC--CCChhhhhCChhhCCHHHHHHH
Confidence 3469999999999987 99999987421 1122222111 12233333 55443 3778889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHH
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 323 (987)
+|||||+.+|++|||||||++||+.+++.+.+.|+++. + |+|+|+|||+++....||+|++|++|++++.++.+++
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 99999999999999999999999999999999999885 3 8999999999997777999999999999999887665
No 49
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=7.7e-47 Score=405.44 Aligned_cols=220 Identities=33% Similarity=0.514 Sum_probs=190.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC--CCCHHHHhc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSLRL 821 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~l~~lR~ 821 (987)
.|+++||+++|.+ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999952 46999999999999999999999999999999999999999999999999985 345567889
Q ss_pred ccEEEccccccccc-cHHHHhccCC---CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 822 KIGLVQQEPALFAA-SIFDNIAYGK---EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 822 ~i~~VpQdp~lF~g-TIreNL~~~~---~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
+|+||||++.+|.. |++||+.++. ...+ ++++.++++..++.++..+ ...+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA-----------YPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHHHHHHHH
Confidence 99999999999876 9999998742 1222 2456778888887665332 23479999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|||||+.+|++||||||||+||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++++++++
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999875 48999999999999874 899999999999999999999876
Q ss_pred CCchHH
Q 001980 972 PDGAYS 977 (987)
Q Consensus 972 ~~g~f~ 977 (987)
+...|.
T Consensus 250 ~~~~~~ 255 (263)
T 2olj_A 250 PQHERT 255 (263)
T ss_dssp CCSHHH
T ss_pred cccHHH
Confidence 554443
No 50
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-47 Score=403.16 Aligned_cols=215 Identities=25% Similarity=0.441 Sum_probs=183.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH-hcc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l-R~~ 822 (987)
-|+++||+++|.+ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 469999999999999999999999999999999999999999999999999998887665 556
Q ss_pred cEEEccccccccc-cHHHHhccCC-CCCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 823 IGLVQQEPALFAA-SIFDNIAYGK-EGATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 823 i~~VpQdp~lF~g-TIreNL~~~~-~~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
|+||||+|.+|.+ |++||+.++. +..+.+ .+.++++..+ |++........+||||||||++|||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LSgGq~qrv~lAr 152 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFP----------RLKERLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCH----------HHHTTTTSBSSSSCHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcc----------cHhhHhcCChhhCCHHHHHHHHHHH
Confidence 9999999999987 9999998753 211222 2333444332 2222334455689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||+++|++||||||||+||+.+.+.+.+.|++.. +++|+|+|||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 153 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999999999999875 6899999999998775 5899999999999999999999854
No 51
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=9.9e-47 Score=418.12 Aligned_cols=223 Identities=30% Similarity=0.531 Sum_probs=193.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC--CCHHHHhc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR--LNLKSLRL 821 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~--i~l~~lR~ 821 (987)
.|+++||+++|. +.++|+||||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.|+.+ ......|+
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 489999999995 3469999999999999999999999999999999999999999999999999932 22334578
Q ss_pred ccEEEcccccccc-ccHHHHhccCCCC--C----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 822 KIGLVQQEPALFA-ASIFDNIAYGKEG--A----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 822 ~i~~VpQdp~lF~-gTIreNL~~~~~~--~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
+|+||||++.+|. .|++|||.++... . .++.+.++++.+++.++..+.| ..||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHH
Confidence 8999999999996 5999999987431 1 1345778888888877654443 4699999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||||+++|++||||||||+||+.+...+++.|.+.. .++|+|+|||+++.+.. ||||+||++|+|++.|+|++++++
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999998777653 48999999999998865 899999999999999999999998
Q ss_pred CCchHHHHH
Q 001980 972 PDGAYSRLL 980 (987)
Q Consensus 972 ~~g~f~~l~ 980 (987)
+...|...+
T Consensus 230 p~~~~~a~~ 238 (359)
T 3fvq_A 230 PADLDAALF 238 (359)
T ss_dssp CSCHHHHHH
T ss_pred cccHHHHHh
Confidence 877766544
No 52
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=9e-47 Score=406.39 Aligned_cols=214 Identities=25% Similarity=0.424 Sum_probs=190.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++...+.+.+|+.+
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 599999999995 34699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccc-ccccHHHHhccCCC----CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHH
Q 001980 824 GLVQQEPAL-FAASIFDNIAYGKE----GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898 (987)
Q Consensus 824 ~~VpQdp~l-F~gTIreNL~~~~~----~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAl 898 (987)
+|+||++.+ |..|++||+.++.. ...++.+.++++..++.++..+ .+ .+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-------DY----RVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-------BG----GGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-------Cc----ccCCHHHHHHHHHHHHH
Confidence 999999976 67899999987642 2234567888888887654332 22 46999999999999999
Q ss_pred cc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHh
Q 001980 899 LK------NPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 899 lr------~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
++ +|++||||||||+||+.+...+.+.|++..+ ++|||+|||+++.+. .||||++|++|++++.|++++++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999998753 579999999999986 48999999999999999999997
Q ss_pred cC
Q 001980 970 SR 971 (987)
Q Consensus 970 ~~ 971 (987)
..
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 53
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=9.6e-47 Score=420.89 Aligned_cols=221 Identities=33% Similarity=0.518 Sum_probs=194.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|. +.++|+||||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+.. +++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 489999999995 34699999999999999999999999999999999999999999999999999988765 4789
Q ss_pred EEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||+|++.+|.. ||+|||.++.. ..+ ++.+.++++.+++.++..+.| .+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----------~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hHCCHHHHHHHHHHH
Confidence 999999999965 99999987521 223 245677888888876544433 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||+.+...+++.|+++.+ +.|+|+|||+++.+.. ||||+||++|+|++.|+|++++.++.
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence 99999999999999999999999999999998753 8999999999998865 89999999999999999999999887
Q ss_pred chHHHHH
Q 001980 974 GAYSRLL 980 (987)
Q Consensus 974 g~f~~l~ 980 (987)
..|...+
T Consensus 227 ~~~v~~~ 233 (381)
T 3rlf_A 227 DRFVAGF 233 (381)
T ss_dssp BHHHHHH
T ss_pred cHHHHHh
Confidence 7776543
No 54
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-46 Score=399.83 Aligned_cols=219 Identities=25% Similarity=0.435 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~ 177 (987)
.++++|++|+|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+ +++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 458999999999999999999999999999999999999999999999999988776544 456
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCC-CCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 178 IGLVNQEPALFAT-TILENILYGK-PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
|+|+||++.+|+. |++||+.++. +....++..+.+ .+.++.++ |+....++.+.+||||||||++|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 9999999864 211112222211 22344442 35556677888999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHHh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999999885 5899999999998775 4999999999999999999988653
No 55
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-46 Score=400.67 Aligned_cols=213 Identities=23% Similarity=0.399 Sum_probs=188.5
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
+.|+++||+++|. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++.. ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 5799999999995 3469999999999999999999999999999999999999999999999999976 55678899
Q ss_pred cEEEccccccccc-cHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 823 IGLVQQEPALFAA-SIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 823 i~~VpQdp~lF~g-TIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
|+||||+|.+|.+ |++||+.++.. ..+. +++.++++..++.++..+ + ..+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-------~----~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-------R----VSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-------B----GGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcC-------C----hhhCCHHHHHHHHHH
Confidence 9999999998876 99999976421 1222 456778888888765443 2 346999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||+++|+|||||||||+||+.+...+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999875 58999999999999876 89999999999999999999975
No 56
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2e-46 Score=415.72 Aligned_cols=219 Identities=29% Similarity=0.496 Sum_probs=183.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC--CHHHHhc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL--QLRWLRD 176 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~--~~~~~~~ 176 (987)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .....++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999963 4599999999999999999999999999999999999999999999999998321 2223456
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+||||+|++.+|+. ||+|||.|+.... ..++..+.. .+.++.+ |+.....+.+.+|||||||||+|||||
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v-----~~~l~~~--gL~~~~~r~~~~LSGGq~QRValArAL 153 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRI-----EAMLELT--GISELAGRYPHELSGGQQQRAALARAL 153 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHH-----HHHHHHH--TCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHH-----HHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 89999999999976 9999999985421 112221111 1222332 666667788889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+.+|++||||||||+||+..+..+.+.+.++. .|+|+|+|||+++++.. ||||++|++|+|++.|+++++....
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 99999999999999999999999998887663 48999999999998865 9999999999999999999998754
No 57
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.9e-46 Score=401.28 Aligned_cols=219 Identities=28% Similarity=0.478 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC----------
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR---------- 813 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~---------- 813 (987)
.|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 499999999995 2469999999999999999999999999999999999999999999999999862
Q ss_pred CCH---HHHhcccEEEccccccccc-cHHHHhccCC---CCCC----HHHHHHHHHHcCchhh-HhhCCCcCCCccCCCC
Q 001980 814 LNL---KSLRLKIGLVQQEPALFAA-SIFDNIAYGK---EGAT----EAEVVEAARAANVHGF-VSALPNAYKTPVGERG 881 (987)
Q Consensus 814 i~l---~~lR~~i~~VpQdp~lF~g-TIreNL~~~~---~~~s----d~ei~~al~~a~l~~~-i~~lp~gldt~vge~G 881 (987)
++. ..+|++++||||++.+|.. |++||+.++. ...+ ++++.++++..++.++ .... .
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-----------P 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-----------G
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-----------c
Confidence 443 3568899999999998876 9999998632 1122 3456778888888776 4332 3
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEE
Q 001980 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRI 959 (987)
Q Consensus 882 ~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~i 959 (987)
.+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|++.. +++|||+|||+++.+. .||+|++|++|++
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4699999999999999999999999999999999999999999999875 4899999999999986 4899999999999
Q ss_pred EEecChhHHhcCCCchH
Q 001980 960 VEQGSHSELVSRPDGAY 976 (987)
Q Consensus 960 ve~Gt~~eLl~~~~g~f 976 (987)
++.|+++++++++...|
T Consensus 232 ~~~g~~~~~~~~~~~~~ 248 (262)
T 1b0u_A 232 EEEGDPEQVFGNPQSPR 248 (262)
T ss_dssp EEEECHHHHHHSCCSHH
T ss_pred EEeCCHHHHHhCcchHH
Confidence 99999999987654444
No 58
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=6.2e-46 Score=400.92 Aligned_cols=213 Identities=30% Similarity=0.550 Sum_probs=188.1
Q ss_pred EEEEeEEEECCCCCC--ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 745 IELRHVDFAYPSRPD--VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~--~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
|+++||+++|+.... .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999952111 4699999999999999999999999999999999999999999999999998642 67889
Q ss_pred cEEEcccc--ccccccHHHHhccCCC-----CCCHHHHHHHHHHcCch--hhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 823 IGLVQQEP--ALFAASIFDNIAYGKE-----GATEAEVVEAARAANVH--GFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 823 i~~VpQdp--~lF~gTIreNL~~~~~-----~~sd~ei~~al~~a~l~--~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
|+||||+| .+|..|++||+.++.. ...++++.++++.+++. ++..+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999997 5678999999987632 12356788899999987 7655433 469999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|||||+++|+|||||||||+||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++++++++
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999875 58999999999999876 899999999999999999999765
No 59
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.6e-46 Score=401.73 Aligned_cols=214 Identities=25% Similarity=0.385 Sum_probs=186.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5899999999974 4599999999999999999999999999999999999999999999999999999988888899
Q ss_pred EEEcCCCCCc-hhcHHHHHhcCCCCCC----HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 179 GLVNQEPALF-ATTILENILYGKPEAT----MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 179 ~~v~Q~~~l~-~~tv~eni~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+|++|++.++ +.||+||+.++..... .+++.++ ++.+ |+.........+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQV---------MAQT--DCLALAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHH---------HHHT--TCSTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHH---------HHHc--CChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 9999999874 5699999998753211 1222222 3333 555555667789999999999999999
Q ss_pred cc------CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 254 LK------NPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 254 ~~------~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
+. +|++||||||||+||+.+++.+.+.|+++. + ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 999999999999999999999999999885 3 5799999999999875 9999999999999999999986
Q ss_pred Hh
Q 001980 325 AK 326 (987)
Q Consensus 325 ~~ 326 (987)
..
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 60
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=7.8e-46 Score=397.64 Aligned_cols=218 Identities=33% Similarity=0.519 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC--CCCHHHHhc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK--TLQLRWLRD 176 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~~ 176 (987)
.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+...+++
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 5999999999963 35899999999999999999999999999999999999999999999999985 334456677
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCC-C--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 177 QIGLVNQEPALFAT-TILENILYGK-P--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
+|+||+|++.+|+. ||+||+.++. . ....++..+ .+.+.++.+ |+.......+.+||||||||++||||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAra 173 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEA-----KAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARA 173 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHH
Confidence 89999999999877 9999998852 1 112221111 122344444 66666777888999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 174 L~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999885 48999999999999875 899999999999999999998654
No 61
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=9.9e-46 Score=397.58 Aligned_cols=214 Identities=28% Similarity=0.442 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ 177 (987)
.|+++|++|+|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..++++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 358999999999999999999999999999999999999999999999999987664 345678
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCC--CC-------------HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCCh
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPE--AT-------------MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSG 241 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg 241 (987)
|+||+|++.+|+. ||+||+.++... .. ..+. ...+.+.++.+ |++....+.+.+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHc--CCchhhCCCchhCCH
Confidence 9999999998875 999999986422 11 1111 11223455555 777778888999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecC
Q 001980 242 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT 319 (987)
Q Consensus 242 GqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 319 (987)
|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999999999999885 48999999999999865 89999999999999999
Q ss_pred hHH
Q 001980 320 HEE 322 (987)
Q Consensus 320 ~~~ 322 (987)
+++
T Consensus 237 ~~~ 239 (257)
T 1g6h_A 237 GEE 239 (257)
T ss_dssp SHH
T ss_pred HHH
Confidence 988
No 62
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4.4e-46 Score=404.96 Aligned_cols=217 Identities=29% Similarity=0.450 Sum_probs=180.8
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhc
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~ 821 (987)
.+.|+++||+|.| .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3569999999864 2589999999999999999999999999999999999999999999998
Q ss_pred ccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 822 KIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 822 ~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
+|+||||+|.+|.+|++||+. +.. ..+..+.++++..++.+++..+|.++++.+++.+.+||||||||++|||||+++
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 499999999999999999998 532 345556677888899999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHH
Q 001980 902 PAILLLDEATSALDAESECVLQEAL-ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l-~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l 979 (987)
|++||||||||+||+.++..+.+.+ ++..+++|||+|||+++.+..||+|++|++|++++.|+|+++++. ...|.+.
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~ 255 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-RPDFSSK 255 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH-CHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh-cHHHHHH
Confidence 9999999999999999999999874 444468999999999999988999999999999999999999764 3445443
No 63
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.1e-46 Score=416.76 Aligned_cols=217 Identities=28% Similarity=0.461 Sum_probs=187.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. ++.|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 3899999999973 4599999999999999999999999999999999999999999999999999887765 3579
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
|||+|++.+|+. ||+|||.|+.. ....++..+. ..+.++.+ |+.....+...+|||||||||+|||||+.
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHH-----HHHHHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence 999999999976 99999998632 1122222211 12334444 66667788889999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+|++||||||||+||+..+..+.+.|+++. + |.|+|+|||+++++.. ||||++|++|+|++.|+++++....
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 999999999999999999999999999885 3 8999999999998765 8999999999999999999997653
No 64
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-45 Score=411.42 Aligned_cols=219 Identities=31% Similarity=0.543 Sum_probs=193.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|. +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..++.. +++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 389999999995 34699999999999999999999999999999999999999999999999999887754 6789
Q ss_pred EEEccccccccc-cHHHHhccCCCC--CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKEG--AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~~--~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||||++.+|.. |++||+.++... .+ ++++.++++..++.++..+.| .+||||||||+||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 999999886421 12 245778888998877655443 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+. .||||++|++|+|++.|+|+++++++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999998753 899999999999875 589999999999999999999998877
Q ss_pred chHHH
Q 001980 974 GAYSR 978 (987)
Q Consensus 974 g~f~~ 978 (987)
..|..
T Consensus 227 ~~~~~ 231 (359)
T 2yyz_A 227 NMFVA 231 (359)
T ss_dssp BHHHH
T ss_pred cHHHH
Confidence 66644
No 65
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=5.8e-46 Score=390.94 Aligned_cols=208 Identities=26% Similarity=0.408 Sum_probs=180.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---Hh
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LR 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR 820 (987)
.|+++|++++|.+ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999953 46999999999999999999999999999999999999999999999999998887653 44
Q ss_pred -cccEEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 821 -LKIGLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 821 -~~i~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
++|+||||+|.+|. .|++||+.++.. ... ++++.++++..++.++.. ....+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS-----------RKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-----------CCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHH
Confidence 78999999999886 599999976421 111 245667777777655432 22347999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~ 965 (987)
+|||||+.+|++||||||||+||+.+...+.+.|++.. +++|||+|||+++.+..||+|++|++|++++.|+.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999999875 58999999999998877999999999999999863
No 66
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=8.6e-46 Score=398.06 Aligned_cols=210 Identities=21% Similarity=0.380 Sum_probs=182.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH-HHhcc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK-SLRLK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~-~lR~~ 822 (987)
.|+++||+++|.+ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 3699999999999999999999999999999999999999999999999999887653 46788
Q ss_pred cEEEcccccccc-ccHHHHhccCCCC---------------CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCC
Q 001980 823 IGLVQQEPALFA-ASIFDNIAYGKEG---------------AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGV 882 (987)
Q Consensus 823 i~~VpQdp~lF~-gTIreNL~~~~~~---------------~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~ 882 (987)
|+||||++.+|. .|++||+.++... .. .+++.++++..++.++. .....
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-----------DRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-----------TSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh-----------CCCch
Confidence 999999999886 6999999875321 11 23455666666665443 23345
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEE
Q 001980 883 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIV 960 (987)
Q Consensus 883 ~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~iv 960 (987)
+||||||||++|||||+++|++||||||||+||+.+.+.+.+.|++.. +++|||+|||+++.+. .||+|++|++|+++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 799999999999999999999999999999999999999999999875 4899999999999886 58999999999999
Q ss_pred EecChhH
Q 001980 961 EQGSHSE 967 (987)
Q Consensus 961 e~Gt~~e 967 (987)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999999
No 67
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=8.3e-46 Score=411.27 Aligned_cols=221 Identities=32% Similarity=0.544 Sum_probs=193.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
..|+++|++++|++ +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 36999999999942 2359999999999999999999999999999999999999999999999999987654 4788
Q ss_pred cEEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 823 IGLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 823 i~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
|+||||++.+|.. |++||+.++.. ..+ ++++.++++..++.++..+.| .+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHH
Confidence 9999999999974 99999987521 122 345778888888877655443 46999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+++++++
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999998753 8999999999998865 8999999999999999999999887
Q ss_pred CchHHH
Q 001980 973 DGAYSR 978 (987)
Q Consensus 973 ~g~f~~ 978 (987)
...|..
T Consensus 238 ~~~~~~ 243 (355)
T 1z47_A 238 GTLFVA 243 (355)
T ss_dssp SSHHHH
T ss_pred cchHHH
Confidence 666543
No 68
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.2e-46 Score=413.42 Aligned_cols=219 Identities=38% Similarity=0.599 Sum_probs=191.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|.+ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+++.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999952 3699999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||||++.+|.. |++||+.++.. ..+ ++++.++++..++.++..+.| .+||||||||+||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 99999987521 122 245677888888876554433 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+. .||+|++|++|+|++.|+|+++++++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK 226 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998753 899999999999875 589999999999999999999998876
Q ss_pred chHHH
Q 001980 974 GAYSR 978 (987)
Q Consensus 974 g~f~~ 978 (987)
..|..
T Consensus 227 ~~~~~ 231 (362)
T 2it1_A 227 YKFVG 231 (362)
T ss_dssp BHHHH
T ss_pred chHHH
Confidence 66644
No 69
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=8e-46 Score=392.79 Aligned_cols=209 Identities=33% Similarity=0.503 Sum_probs=182.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++||+++|. + +|+|+||+|++ |.+||+||||||||||+++|.|+++|++|+|.+||.++.+.+ ..|++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999994 2 59999999999 999999999999999999999999999999999999997643 3578899
Q ss_pred EEccccccccc-cHHHHhccCCCCC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKEGA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
||||++.+|.. |++||+.++.... .++++.++++..++.++... ...+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDR-----------KPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTC-----------CGGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcC-----------ChhhCCHHHHHHHHHHHHHH
Confidence 99999999876 9999998764321 13456777777777654332 23479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCC
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
++|++||||||||+||+.+.+.+.+.|++..+ ++|||+|||+++.+. .||+|++|++|++++.|+++++++++
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999999999998753 899999999999875 58999999999999999999998765
No 70
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=6.7e-46 Score=402.05 Aligned_cols=214 Identities=24% Similarity=0.370 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC--CCCHHHHhc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSLRL 821 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~l~~lR~ 821 (987)
.|+++||+++|.+ .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999953 46999999999999999999999999999999999999999999999999998 778888999
Q ss_pred ccEEEcccccc-ccc--cHHHHhccCCC-------CCC---HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 822 KIGLVQQEPAL-FAA--SIFDNIAYGKE-------GAT---EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 822 ~i~~VpQdp~l-F~g--TIreNL~~~~~-------~~s---d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
+|+||||++.+ |.. |++||+.++.. ... .+++.++++..++.++.. .. ..+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~----~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-------QY----IGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT-------SB----GGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc-------CC----hhhCCHHH
Confidence 99999999875 555 99999987531 112 234667777777765432 22 34699999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeE--EEEecCchhhh-ccCEEEEEeCCEEEEecC
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTT--VLVAHRLSTIR-GVDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~~Tv--I~IaHRl~ti~-~~D~Iivl~~G~ive~Gt 964 (987)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|| |+|||+++.+. .||+|++|++|++++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998753 7899 99999999985 589999999999999999
Q ss_pred hhHHhcC
Q 001980 965 HSELVSR 971 (987)
Q Consensus 965 ~~eLl~~ 971 (987)
+++++++
T Consensus 247 ~~~~~~~ 253 (279)
T 2ihy_A 247 VEDILTS 253 (279)
T ss_dssp HHHHCSH
T ss_pred HHHHhcc
Confidence 9999753
No 71
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1e-45 Score=389.11 Aligned_cols=211 Identities=27% Similarity=0.412 Sum_probs=179.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---Hh
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW---LR 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 175 (987)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... ++
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999963 45899999999999999999999999999999999999999999999999998776542 33
Q ss_pred -cceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 176 -DQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 176 -~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
++|+|++|++.+|+. |++||+.++.. .....+.. ..+.+.++.+ |+.........+||||||||++|||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK-----ERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 679999999998875 99999987531 11111111 1122344544 6666677788899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEEEeCCEEEEecC
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 319 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 319 (987)
||+.+|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+..||+|++|++|+++++|+
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999885 5899999999999886799999999999999885
No 72
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.6e-45 Score=410.43 Aligned_cols=219 Identities=30% Similarity=0.521 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|. +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..++.. +++|
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 499999999995 24699999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEcccccccc-ccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||||++.+|. .|++|||.++.. ..+. +++.++++..++.++..+.| .+||||||||+||||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999986 599999998743 1232 35678888888877655443 479999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+. .||+|++|++|+|++.|+|++++.++.
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 234 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 234 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999998753 799999999999875 589999999999999999999998877
Q ss_pred chHHH
Q 001980 974 GAYSR 978 (987)
Q Consensus 974 g~f~~ 978 (987)
..|..
T Consensus 235 ~~~~a 239 (372)
T 1v43_A 235 SVFVA 239 (372)
T ss_dssp BHHHH
T ss_pred cHHHH
Confidence 66644
No 73
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-45 Score=393.99 Aligned_cols=216 Identities=25% Similarity=0.401 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....++++|
T Consensus 15 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i 90 (256)
T 1vpl_A 15 AVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90 (256)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred eEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence 5999999999963 459999999999999999999999999999999999999999999999999876 455677889
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+|+||++.+++. ||+||+.++.. ....++..+ .+.+.++.+ |+.......+.+||||||||++|||||+.
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~~ 163 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE-----MVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMV 163 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999877 99999987521 111111111 112223333 66666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 164 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 164 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999885 58999999999999876 89999999999999999998864
No 74
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2e-45 Score=408.21 Aligned_cols=217 Identities=30% Similarity=0.543 Sum_probs=191.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++||+++|. +. +|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+++. .|++|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999994 24 8999999999999999999999999999999999999999999999999987654 478899
Q ss_pred EEccccccccc-cHHHHhccCCC---CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE---GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~---~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
||||++.+|.. |++||+.++.. ...++++.++++..++.++..+.| .+||||||||+||||||++
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 99999999975 99999987521 112367888899988876654433 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~ 977 (987)
+|++||||||||+||+.+...+++.|++.. .+.|+|+|||+++.+. .||+|++|++|+|++.|+|+++++++...|.
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~ 224 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHH
Confidence 999999999999999999999999999875 3899999999999875 5899999999999999999999988766664
Q ss_pred H
Q 001980 978 R 978 (987)
Q Consensus 978 ~ 978 (987)
.
T Consensus 225 a 225 (348)
T 3d31_A 225 A 225 (348)
T ss_dssp H
T ss_pred H
Confidence 3
No 75
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.2e-45 Score=411.83 Aligned_cols=221 Identities=29% Similarity=0.491 Sum_probs=192.4
Q ss_pred cEEEEeEEEECCCCCCcc--ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC---HHH
Q 001980 744 EIELRHVDFAYPSRPDVV--VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKS 818 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~--vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---l~~ 818 (987)
.|+++||+++|.+ .+ +|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999952 35 999999999999999999999999999999999999999999999999987621 334
Q ss_pred HhcccEEEccccccccc-cHHHHhccCCCC--CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 819 LRLKIGLVQQEPALFAA-SIFDNIAYGKEG--AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 819 lR~~i~~VpQdp~lF~g-TIreNL~~~~~~--~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
.|++|+||||++.+|.. |++||+.++... .+ ++++.++++..++.++..+.| .+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 57899999999999975 999999886431 22 345778888888877655443 4699999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
++|||||+++|++||||||||+||+.+...+++.|++..+ ++|+|+|||+++.+.. ||||++|++|+|++.|+|+++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999998753 8999999999998765 899999999999999999999
Q ss_pred hcCCCchHHH
Q 001980 969 VSRPDGAYSR 978 (987)
Q Consensus 969 l~~~~g~f~~ 978 (987)
++++...|..
T Consensus 229 ~~~p~~~~~~ 238 (353)
T 1oxx_K 229 YDNPVSIQVA 238 (353)
T ss_dssp HHSCSSHHHH
T ss_pred HhCcccHHHH
Confidence 9887666643
No 76
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3e-45 Score=390.20 Aligned_cols=208 Identities=24% Similarity=0.382 Sum_probs=188.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
-|+++||+++ ++|+|+||+|++||.+||+||||||||||+++|.|+++|+ |+|.++|.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 3899999985 3899999999999999999999999999999999999999 9999999999988888999999
Q ss_pred EEEccccccccc-cHHHHhccCCC-CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKE-GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~-~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
+||||++.+|.+ |++||+.++.. ..+++++.++++..++.++... ...+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----------STNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTS-----------BGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998865 99999987642 2247778899999988765432 2357999999999999999999
Q ss_pred CC-------EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhHHhc
Q 001980 902 PA-------ILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 902 p~-------ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti-~~~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|+ +||||||||+||+.+.+.+.+.|++.. +++|+|+|||+++.+ ..||+|++|++|++++.|+++++++
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999999875 589999999999998 4689999999999999999999975
No 77
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-45 Score=394.78 Aligned_cols=218 Identities=30% Similarity=0.506 Sum_probs=184.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC----------
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT---------- 168 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~---------- 168 (987)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4899999999963 458999999999999999999999999999999999999999999999999862
Q ss_pred CCH---HHHhcceEEEcCCCCCchh-cHHHHHhcCC-C--CCCHHHHHHHHHHHhHHHHHHhCCCCCccc-ccCCCCCCC
Q 001980 169 LQL---RWLRDQIGLVNQEPALFAT-TILENILYGK-P--EATMAEVEAAASAANAHSFITLLPNGYSTQ-VGERGVQLS 240 (987)
Q Consensus 169 ~~~---~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~-~~~~g~~LS 240 (987)
.+. ..++++|+||+|++.+|+. ||+||+.++. . ....++..+ .+.+.++.+ |+... ....+.+||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARE-----RALKYLAKV--GIDERAQGKYPVHLS 155 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHH-----HHHHHHHHT--TCCHHHHTSCGGGSC
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHH-----HHHHHHHHc--CCCchhhcCCcccCC
Confidence 333 3456789999999999877 9999998842 1 112111111 122334444 66655 677788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 241 gGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999885 48999999999999865 8999999999999999
Q ss_pred ChHHHHHh
Q 001980 319 THEELIAK 326 (987)
Q Consensus 319 ~~~~l~~~ 326 (987)
+++++...
T Consensus 236 ~~~~~~~~ 243 (262)
T 1b0u_A 236 DPEQVFGN 243 (262)
T ss_dssp CHHHHHHS
T ss_pred CHHHHHhC
Confidence 99998754
No 78
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-45 Score=407.80 Aligned_cols=219 Identities=31% Similarity=0.481 Sum_probs=186.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999963 4589999999999999999999999999999999999999999999999999877653 4689
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|||+|++.+|+. ||+|||.|+.......+-. ....+.+.++.+ |+.........+||||||||++|||||+.+|
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~---~~~~v~~~l~~~--~L~~~~~r~~~~LSgGq~QRvalArAL~~~P 152 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDE---VEKRVVEIARKL--LIDNLLDRKPTQLSGGQQQRVALARALVKQP 152 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHH---TTHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999999976 9999999975322111100 001122334444 6666677788899999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++++.. ||+|++|++|+|++.|+++++..+.
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 153 KVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999998853 8999999999998754 8999999999999999999997653
No 79
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.1e-45 Score=406.71 Aligned_cols=218 Identities=31% Similarity=0.474 Sum_probs=186.3
Q ss_pred ccEEEEeEEEEC-CCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc
Q 001980 98 GNIEFKNVTFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 176 (987)
Q Consensus 98 ~~i~~~~~~~~y-~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 176 (987)
..|+++|++++| ++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++ .++
T Consensus 13 ~~l~~~~l~~~y~g~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r 87 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG---ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKR 87 (355)
T ss_dssp EEEEEEEEEECCTTS---TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGS
T ss_pred ceEEEEEEEEEEcCC---CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhC
Confidence 359999999999 53 348999999999999999999999999999999999999999999999999977654 357
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+|+||+|++.+|+. ||+|||.|+.. ....++..+ .+.+.++.+ |+.........+||||||||++|||||
T Consensus 88 ~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL 160 (355)
T 1z47_A 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA-----RVRELLRFM--RLESYANRFPHELSGGQQQRVALARAL 160 (355)
T ss_dssp SEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 89999999999976 99999998632 112121111 122334444 666667778889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+.+|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++++.. ||+|++|++|+|++.|+++++..+.
T Consensus 161 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 161 APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp TTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999998853 8999999999998765 8999999999999999999997653
No 80
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4.5e-45 Score=397.01 Aligned_cols=211 Identities=26% Similarity=0.432 Sum_probs=174.7
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..++++|++|.+ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 39 ~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp -----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred ceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 469999999964 2489999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 178 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 178 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|+|+||++.+|+.||+||+. +.. ....+..+.++..++.+.+..+|.++++.+++++.+||||||||++|||||+++|
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p 178 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred EEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence 99999999999899999998 542 2233445566667777888899999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHH-HhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhh
Q 001980 258 KILLLDEATSALDAGSESIVQEAL-DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAG 328 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 328 (987)
+++||||||++||+.+++.+.+.+ .++.+++|+|++||+++.+..||+|++|++|++++.|+++++.....
T Consensus 179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 250 (290)
T 2bbs_A 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRP 250 (290)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHCH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhcH
Confidence 999999999999999999999864 45556899999999999887899999999999999999999875433
No 81
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.3e-45 Score=397.94 Aligned_cols=217 Identities=24% Similarity=0.364 Sum_probs=185.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC--CCCHHHHh
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK--TLQLRWLR 175 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~ 175 (987)
..|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. ..+...++
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 35999999999963 35899999999999999999999999999999999999999999999999987 66777788
Q ss_pred cceEEEcCCCCC-chh--cHHHHHhcCCCC-------CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 176 DQIGLVNQEPAL-FAT--TILENILYGKPE-------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 176 ~~i~~v~Q~~~l-~~~--tv~eni~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
++|+|++|++.+ +.. ||+||+.++... ...+. . ..+.+.++.+ |+.........+|||||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI-R-----NEAHQLLKLV--GMSAKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHH-H-----HHHHHHHHHT--TCGGGTTSBGGGSCHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHH-H-----HHHHHHHHHc--CChhHhcCChhhCCHHHHH
Confidence 899999999864 444 999999986421 01111 1 1122344554 6766777888899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC-CCeE--EEEcCCCCcccc-CCEEEEEeCCEEEEecChH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-GRTT--VVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tv--i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 321 (987)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+ |+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 248 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998853 8999 999999999865 8999999999999999999
Q ss_pred HHHH
Q 001980 322 ELIA 325 (987)
Q Consensus 322 ~l~~ 325 (987)
++.+
T Consensus 249 ~~~~ 252 (279)
T 2ihy_A 249 DILT 252 (279)
T ss_dssp HHCS
T ss_pred HHhc
Confidence 8864
No 82
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=7.5e-45 Score=392.47 Aligned_cols=213 Identities=29% Similarity=0.510 Sum_probs=181.1
Q ss_pred EEEEeEEEECCCCCC--ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 100 IEFKNVTFSYPSRPD--VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 100 i~~~~~~~~y~~~~~--~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
|+++|++|+|+.... .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... .++++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4589999999999999999999999999999999999999999999999988642 56778
Q ss_pred eEEEcCCC--CCchhcHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHHhCCCCCc--ccccCCCCCCChHHHHHHH
Q 001980 178 IGLVNQEP--ALFATTILENILYGKPE-----ATMAEVEAAASAANAHSFITLLPNGYS--TQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 178 i~~v~Q~~--~l~~~tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~--t~~~~~g~~LSgGqkqRia 248 (987)
|+|++|+| .+++.|++||+.++... ...+++.++++.. |++ ........+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFV-----------GLDFDSFKDRVPFFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHT-----------TCCHHHHTTCCGGGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHc-----------CcCCcccccCChhhCCHHHHHHHH
Confidence 99999996 45677999999987421 1123344444333 444 4455666799999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999885 58999999999999876 899999999999999999988654
No 83
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.1e-45 Score=408.37 Aligned_cols=216 Identities=34% Similarity=0.535 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999963 3589999999999999999999999999999999999999999999999999877654 4679
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
|||+|++.+|+. ||+|||.|+.. ....++..+ .+.+.++.+ |+.........+||||||||++|||||+.
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDK-----KVREVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVK 150 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999976 99999998632 111222111 122334444 66666778888999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|++||||||||+||+..++.+.+.|+++.+ |+|+|+|||+++++.. ||+|++|++|+|++.|++++++.+
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998853 8999999999998754 899999999999999999998765
No 84
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.1e-45 Score=393.29 Aligned_cols=210 Identities=23% Similarity=0.361 Sum_probs=175.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc--CCCCCceEEECCccCCCCCHHHH-h
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF--YDPTAGKVMIDGKDIRRLNLKSL-R 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~i~l~~l-R 820 (987)
-|+++||+++|.+ .++|+|+||+|++||.+||+||||||||||+++|.|+ ++|++|+|.+||.++...+.... |
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 3899999999953 4699999999999999999999999999999999999 89999999999999998887665 5
Q ss_pred cccEEEccccccccc-cHHHHhccCC----C-CCC----HHHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCC-CChhH
Q 001980 821 LKIGLVQQEPALFAA-SIFDNIAYGK----E-GAT----EAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQ-LSGGQ 888 (987)
Q Consensus 821 ~~i~~VpQdp~lF~g-TIreNL~~~~----~-~~s----d~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~-LSgGQ 888 (987)
..++||||+|.+|.+ |++||+.++. . ... ++++.++++..++. ++.. .++ .. |||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~~~----~~~LSgGq 148 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS-------RYL----NEGFSGGE 148 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG-------SBT----TCC----H
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc-------CCc----ccCCCHHH
Confidence 569999999999875 9999997532 1 111 23456677777763 3332 222 24 99999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc--cCEEEEEeCCEEEEecCh
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG--VDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~--~D~Iivl~~G~ive~Gt~ 965 (987)
|||++|||||+++|++||||||||+||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999875 47899999999999886 599999999999999999
Q ss_pred hH
Q 001980 966 SE 967 (987)
Q Consensus 966 ~e 967 (987)
+.
T Consensus 229 ~~ 230 (250)
T 2d2e_A 229 EL 230 (250)
T ss_dssp HH
T ss_pred HH
Confidence 83
No 85
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=4.6e-45 Score=409.50 Aligned_cols=219 Identities=29% Similarity=0.502 Sum_probs=191.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC------CCHH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR------LNLK 817 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~------i~l~ 817 (987)
.|+++||+++|. +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+ ++.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 389999999995 3469999999999999999999999999999999999999999999999999876 554
Q ss_pred HHhcccEEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 818 SLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
.+++|+||||++.+|. .|++||+.++.. ..+ ++.+.++++..++.++..+.| .+|||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~Q 146 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQ 146 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHH
Confidence 3678999999999986 599999987521 122 245677888888876654433 469999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhH
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~e 967 (987)
|+||||||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+. .||+|++|++|+|++.|+|++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998753 899999999999886 589999999999999999999
Q ss_pred HhcCCCchHHH
Q 001980 968 LVSRPDGAYSR 978 (987)
Q Consensus 968 Ll~~~~g~f~~ 978 (987)
+++++...|..
T Consensus 227 l~~~p~~~~~~ 237 (372)
T 1g29_1 227 VYDKPANTFVA 237 (372)
T ss_dssp HHHSCSBHHHH
T ss_pred HHhCcccHHHH
Confidence 99887766644
No 86
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=7.1e-45 Score=406.91 Aligned_cols=217 Identities=27% Similarity=0.440 Sum_probs=181.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...++. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999963 4589999999999999999999999999999999999999999999999999877654 4679
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
|||+|++.+|+. ||+|||.|+... ...++..+ .+.+.++.+ |+.........+||||||||++|||||+.
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK-----RVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHH-----HHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999976 999999998542 12222111 122344444 66667778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHHhh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+|++||||||||+||+..++.+.+.|+++.+ |.|+|+|||+++++. .||+|++|++|+|++.|+++++..+.
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999998853 899999999999875 48999999999999999999997653
No 87
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=9.4e-45 Score=384.58 Aligned_cols=212 Identities=30% Similarity=0.442 Sum_probs=181.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ +|+|+||++++ |+++|+||||||||||+|+|+|+++|++|+|.++|.++...+ ..+++|+
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999962 49999999999 999999999999999999999999999999999999986543 2366899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 180 LVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
|+||++.+|+. |++||+.++........- ...+.+.++.+ |+.........+||||||||++|||||+.+|+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVER-----DRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHH-----HHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchH-----HHHHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999987 999999997532221111 11223445555 66666677888999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
++||||||++||+.+++.+.+.|+++. + |+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999884 3 8999999999998755 899999999999999999988653
No 88
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=8.8e-45 Score=403.08 Aligned_cols=211 Identities=30% Similarity=0.499 Sum_probs=183.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++ . +|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. +++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchh--hCcEE
Confidence 789999999963 3 89999999999999999999999999999999999999999999999999876543 56899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 180 LVNQEPALFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
||+|++.+|+. ||+||+.|+.. ....+++. +.++.+ |++........+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~---------~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVL---------DTARDL--KIEHLLDRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHH---------HHHHHT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHH---------HHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999987 99999998631 11112222 233333 55556677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+|++||||||||+||+.+++.+.+.|+++. .|+|+|+|||+++++.. ||+|++|++|++++.|+++++..+.
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999884 38999999999998754 8999999999999999999997653
No 89
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.5e-45 Score=406.54 Aligned_cols=219 Identities=29% Similarity=0.431 Sum_probs=185.6
Q ss_pred cEEEEeEEEECCCCCCcc--ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---HHH
Q 001980 99 NIEFKNVTFSYPSRPDVI--IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ---LRW 173 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~--~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~---~~~ 173 (987)
.|+++|++++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999963 45 899999999999999999999999999999999999999999999999986521 222
Q ss_pred HhcceEEEcCCCCCchh-cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 174 LRDQIGLVNQEPALFAT-TILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 174 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
.+++||||+|++.+|+. ||+||+.|+.... ..++..+ .+.+.++.+ |+.........+||||||||++||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK-----RVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHH
Confidence 46789999999999976 9999999975321 2222111 122334444 666667778889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
|||+.+|++||||||||+||+..++.+.+.|+++.+ |+|+|+|||+++++.. ||+|++|++|++++.|+++++..+.
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999998853 8999999999998765 8999999999999999999998653
No 90
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.1e-44 Score=383.66 Aligned_cols=208 Identities=21% Similarity=0.329 Sum_probs=182.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++|+ ++|+|+||++++||+++|+||||||||||+|+|+|+++|+ |+|.++|.++...+...++++|
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 3899999986 3899999999999999999999999999999999999999 9999999999888888888899
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC-CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE-ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
+|++|++.+|.. ||+||+.++... ...+++.+ .++.+ |+.......+.+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLND---------VAGAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHH---------HHHHT--TCGGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHH---------HHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998876 999999987421 12223333 23333 566666778889999999999999999999
Q ss_pred CC-------EEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHH
Q 001980 257 PK-------ILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 257 ~~-------illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|+ +|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999999884 5899999999999985 599999999999999999998864
No 91
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1e-44 Score=406.67 Aligned_cols=216 Identities=27% Similarity=0.473 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC------CCHH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT------LQLR 172 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~------~~~~ 172 (987)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .++.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 3899999999963 458999999999999999999999999999999999999999999999999865 4433
Q ss_pred HHhcceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 173 WLRDQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 173 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
+++||||+|++.+|+. ||+||+.|+.. ....++..+. +.+.++.+ |+.........+||||||||++|
T Consensus 80 --~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR-----VREVAELL--GLTELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp --GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHH-----HHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHH
T ss_pred --HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCCcccCCHHHHHHHHH
Confidence 5689999999999976 99999998632 1122221111 12223333 66666677888999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||||+.+|++||||||||+||+..++.+.+.|+++.+ |.|+|+|||+++++.. ||+|++|++|++++.|++++++.+
T Consensus 151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999998853 8999999999998865 899999999999999999998764
No 92
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.4e-44 Score=390.24 Aligned_cols=215 Identities=24% Similarity=0.350 Sum_probs=180.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc--CCCCCceEEECCccCCCCCHHHH-h
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF--YDPTAGKVMIDGKDIRRLNLKSL-R 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~i~l~~l-R 820 (987)
.|+++||+++|. +.++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.+||.++...+.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999994 34699999999999999999999999999999999999 57899999999999988887665 4
Q ss_pred cccEEEccccccccc-cHHHHhccCC---------CCCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 821 LKIGLVQQEPALFAA-SIFDNIAYGK---------EGATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 821 ~~i~~VpQdp~lF~g-TIreNL~~~~---------~~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
..++||||+|.+|.+ |+++|+.++. +..++ +.+.++++..++.+. -.+.+++ .+|||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~---~~LSg 167 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED------LLTRSVN---VGFSG 167 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTT------TTTSBTT---TTCCH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChh------HhcCCcc---cCCCH
Confidence 569999999998876 8999986421 11232 235566666655321 1122221 25999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc--cCEEEEEeCCEEEEec
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG--VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~--~D~Iivl~~G~ive~G 963 (987)
|||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g 247 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999875 47999999999999876 7999999999999999
Q ss_pred ChhHHhc
Q 001980 964 SHSELVS 970 (987)
Q Consensus 964 t~~eLl~ 970 (987)
+++++..
T Consensus 248 ~~~~~~~ 254 (267)
T 2zu0_C 248 DFTLVKQ 254 (267)
T ss_dssp CTTHHHH
T ss_pred CHHHHhh
Confidence 9998743
No 93
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.4e-44 Score=385.13 Aligned_cols=214 Identities=25% Similarity=0.358 Sum_probs=173.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEeCCCCCHHHH-h
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF--YDPNAGHVLLDNVDIKTLQLRWL-R 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~-~ 175 (987)
.++++|++|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++...+.... +
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 3899999999963 4599999999999999999999999999999999998 88999999999999988776554 4
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCC---C--CCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCC-CChHHHHHH
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKP---E--ATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQ-LSGGQKQRI 247 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~-LSgGqkqRi 247 (987)
..++|++|+|.+|+. |++||+.++.. . ....+..+ .+.+.++.+ |++ ........+ ||||||||+
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWT-----KVKKALELL--DWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHH--TCCGGGGGSBTTCC----HHHHH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHHHHHH
Confidence 569999999999876 99999987421 0 11111111 112233333 553 344556667 999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc--CCEEEEEeCCEEEEecChHH
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN--VDTVAVIQQGQVVETGTHEE 322 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 322 (987)
+|||||+++|+++||||||++||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999999885 48999999999999876 49999999999999999873
No 94
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.8e-44 Score=385.52 Aligned_cols=207 Identities=21% Similarity=0.379 Sum_probs=181.8
Q ss_pred EEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 745 IELRHVDFAYPSR-PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~-~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
|+++|++++|++. ...++|+|+||+|+ ||++||+||||||||||+++|.|++ |++|+|.++|.++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999531 01469999999999 9999999999999999999999999 9999999999998765 33 7889
Q ss_pred E-EEccccccccccHHHHhccCCC--CCCHHHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 824 G-LVQQEPALFAASIFDNIAYGKE--GATEAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 824 ~-~VpQdp~lF~gTIreNL~~~~~--~~sd~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
+ ||||+|.+ ..|++||+.++.. ...++++.++++..++. +... ....+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR-----------RKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGG-----------SBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 9999999986432 34567788888888776 5432 234579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccC-EEEEEeCCEEEEecChhHHhc
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVD-CIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~-~~D-~Iivl~~G~ive~Gt~~eLl~ 970 (987)
++|++|||||||++||+.+.+.+.+.|++..+ |+|+|||+++.+. .|| +|++|++|++++.|+++++.+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999998754 9999999999875 589 999999999999999999974
No 95
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.3e-43 Score=379.51 Aligned_cols=216 Identities=23% Similarity=0.299 Sum_probs=180.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEeCCCCCHHHH-h
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF--YDPNAGHVLLDNVDIKTLQLRWL-R 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~-~ 175 (987)
.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++...+.... +
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999963 4599999999999999999999999999999999999 57999999999999987776554 4
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCC---------CCCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCC-CCChHH
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGK---------PEATMAEVEAAASAANAHSFITLLPNGYST-QVGERGV-QLSGGQ 243 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~-~LSgGq 243 (987)
..|+|++|+|.+|+. |++||+.++. +....++..+ .+.+.++.+ |+.+ ....... +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 469999999999877 9999997531 1111111111 123345554 6654 3445554 599999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc--CCEEEEEeCCEEEEecCh
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN--VDTVAVIQQGQVVETGTH 320 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~ 320 (987)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999999885 48999999999999875 799999999999999998
Q ss_pred HHHH
Q 001980 321 EELI 324 (987)
Q Consensus 321 ~~l~ 324 (987)
+++.
T Consensus 250 ~~~~ 253 (267)
T 2zu0_C 250 TLVK 253 (267)
T ss_dssp THHH
T ss_pred HHHh
Confidence 8764
No 96
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=6.7e-44 Score=381.48 Aligned_cols=208 Identities=25% Similarity=0.385 Sum_probs=178.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|. +|++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 4899999999951 23699999999999999999999999999999999999999999998 36789
Q ss_pred EEEccccccc-cccHHHHhccCCC---C----CC---HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 824 GLVQQEPALF-AASIFDNIAYGKE---G----AT---EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 824 ~~VpQdp~lF-~gTIreNL~~~~~---~----~s---d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+||||+|.+| ..|++||+.++.. . .. ++++.++++..++.++..+ ...+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR-----------EFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcC-----------ChhhCCHHHHHHH
Confidence 9999999887 6799999987531 0 12 3457788888888765433 2347999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+|||||+++|+|||||||||+||+.+...+.+.|++..+ ++|||+|||+++.+. .||+|++|++|+ ++.|++++++
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999999999998753 899999999999985 589999999999 9999999997
Q ss_pred cCCCchHHHHH
Q 001980 970 SRPDGAYSRLL 980 (987)
Q Consensus 970 ~~~~g~f~~l~ 980 (987)
+. ..+.+.+
T Consensus 217 ~~--~~~~~~~ 225 (253)
T 2nq2_C 217 TS--ENLTALF 225 (253)
T ss_dssp CH--HHHHHHH
T ss_pred Cc--HHHHHHh
Confidence 53 2344444
No 97
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=9.2e-44 Score=381.55 Aligned_cols=207 Identities=17% Similarity=0.300 Sum_probs=178.0
Q ss_pred EEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 100 IEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~-~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
++++|++++|++. ...++|+|+||+++ |++++|+||||||||||+|+|+|++ |++|+|.++|.++... .. +++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01458999999999 9999999999999999999999999 9999999999988654 22 6689
Q ss_pred E-EEcCCCCCchhcHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 G-LVNQEPALFATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~-~v~Q~~~l~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+ |+||+|.+ +.|++||+.++.+ ....+++. +.++.+ |++ ...++++.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFL---------EMLKAL--KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHH---------HHHHHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHH---------HHHHHc--CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 7799999987532 12222332 334444 676 7778888999999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccc-cCC-EEEEEeCCEEEEecChHHHHH
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIR-NVD-TVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d-~i~~l~~G~i~~~g~~~~l~~ 325 (987)
.+|+++||||||++||+.+++.+.+.|+++.+ |+|++||+++.+. .|| ++++|++|++++.|+++++.+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999998854 9999999999876 489 999999999999999998864
No 98
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.8e-43 Score=376.60 Aligned_cols=204 Identities=27% Similarity=0.399 Sum_probs=172.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+ +++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------CSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------eccE
Confidence 4899999999962 235899999999999999999999999999999999999999999983 4579
Q ss_pred EEEcCCCCCc-hhcHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 179 GLVNQEPALF-ATTILENILYGKPE------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 179 ~~v~Q~~~l~-~~tv~eni~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
+|+||++.++ ..||+||+.++... .......+ .+.+.++.+ |+.......+.+||||||||++|||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAr 141 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ-----VAMQALDYL--NLTHLAKREFTSLSGGQRQLILIAR 141 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHH-----HHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHH-----HHHHHHHHc--CChHHhcCChhhCCHHHHHHHHHHH
Confidence 9999999888 45999999986421 00111111 112334444 6666677788899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHH
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
||+.+|++|||||||++||+.+++.+.+.|.++. + |+|+|++||+++.+. .||++++|++|+ ++.|+++++..
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 142 AIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 9999999999999999999999999999999885 3 899999999999885 599999999999 99999998864
No 99
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4.7e-43 Score=364.16 Aligned_cols=194 Identities=16% Similarity=0.295 Sum_probs=164.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.|
T Consensus 10 ~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 5999999999963 5999999999999999999999999999999999999999999999999885 257789
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCC----CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 179 GLVNQEPALFAT-TILENILYGKP----EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+|+||+|.+|+. ||+||+.++.. ....+++.+ .++.+ |++.. ++.+.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~---------~l~~~--gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMD---------ALESV--EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHH---------HHHHT--TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHH---------HHHHc--CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999877 99999987521 111222322 33444 66666 778889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEE
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQV 314 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 314 (987)
+.+|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999999875 48999999999999887 56655 555655
No 100
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-43 Score=365.92 Aligned_cols=196 Identities=19% Similarity=0.335 Sum_probs=167.9
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
..|+++||+++|+ + ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|++
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~ 79 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGK 79 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGG
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCc
Confidence 3699999999994 3 6999999999999999999999999999999999999999999999999986 36889
Q ss_pred cEEEccccccccc-cHHHHhccCC---C-CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 823 IGLVQQEPALFAA-SIFDNIAYGK---E-GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 823 i~~VpQdp~lF~g-TIreNL~~~~---~-~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
++||||+|.+|.+ |++||+.++. . ...++++.++++..++.++ ...+.+||||||||++||||
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~------------~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL------------KKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT------------TSBGGGSCHHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC------------CCChhhCCHHHHHHHHHHHH
Confidence 9999999999876 9999998642 1 2235677788887766543 23345799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEE
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl~~G~i 959 (987)
|+++|++|||||||++||+.+...+.+.|++.. +++|||++||+++.+..++..+++..|+|
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~ 210 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKI 210 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC--
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCcc
Confidence 999999999999999999999999999999875 47899999999999987544445666766
No 101
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=100.00 E-value=2.4e-38 Score=376.07 Aligned_cols=170 Identities=16% Similarity=0.031 Sum_probs=123.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
++.+++++.|++- ..+|.+ .|++|+.++|+|++|||||||++.+++...|. |. +.+.
T Consensus 258 ~~~~~l~~g~~~l--d~vL~g---~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~ 314 (525)
T 1tf7_A 258 SSNVRVSSGVVRL--DEMCGG---GFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAIL 314 (525)
T ss_dssp CCCCEECCSCHHH--HHHTTS---SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEE
T ss_pred cccceeecChHHH--HHHhCC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEE
Confidence 3456777666320 124444 89999999999999999999999999998875 43 1245
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
+++|++. .+++.|.... ..+-++ +...++..+. ......|||||+||+++||++..+|++
T Consensus 315 ~~~ee~~---~~l~~~~~~~--g~~~~~----~~~~g~~~~~-----------~~~p~~LS~g~~q~~~~a~~l~~~p~l 374 (525)
T 1tf7_A 315 FAYEESR---AQLLRNAYSW--GMDFEE----MERQNLLKIV-----------CAYPESAGLEDHLQIIKSEINDFKPAR 374 (525)
T ss_dssp EESSSCH---HHHHHHHHTT--SCCHHH----HHHTTSEEEC-----------CCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEeCCH---HHHHHHHHHc--CCCHHH----HHhCCCEEEE-----------EeccccCCHHHHHHHHHHHHHhhCCCE
Confidence 6677762 2455554211 122222 1222222221 223356999999999999999999999
Q ss_pred EEEeCCCCCCCHH-----HHHHHHHHHHHHc-CCCeEEEEecCc----------hhhhc-cCEEEEEeCCE
Q 001980 905 LLLDEATSALDAE-----SECVLQEALERLM-RGRTTVLVAHRL----------STIRG-VDCIGVVQDGR 958 (987)
Q Consensus 905 LlLDEaTS~LD~~-----te~~I~~~l~~~~-~~~TvI~IaHRl----------~ti~~-~D~Iivl~~G~ 958 (987)
||+| ||++||.. ..+.+.+.++... .++|+|+|+|.. ..+.. ||+|++|++|+
T Consensus 375 lilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 375 IAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999 99999999 8888888887764 589999999998 66654 79999999886
No 102
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=1.7e-39 Score=353.09 Aligned_cols=220 Identities=19% Similarity=0.259 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCc
Q 001980 695 ANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQ 774 (987)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge 774 (987)
..++..+...+..+.++..+.+|+.++++.+++.... . ....+..+.|+++||+|+|+ .++|+|+||+|++|+
T Consensus 55 ~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~--~-~~~~~~~~~i~~~~vs~~y~----~~vL~~vsl~i~~Ge 127 (305)
T 2v9p_A 55 AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG--E-GSWKSILTFFNYQNIELITF----INALKLWLKGIPKKN 127 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS--S-CCTHHHHHHHHHTTCCHHHH----HHHHHHHHHTCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC--C-CcccccCCeEEEEEEEEEcC----hhhhccceEEecCCC
Confidence 4677788888888889999999999998765432211 1 11122345699999999995 369999999999999
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHH-HhccCCCCCCHHHH
Q 001980 775 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD-NIAYGKEGATEAEV 853 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIre-NL~~~~~~~sd~ei 853 (987)
++|||||||||||||+++|.|++ +|+| +++++|+|.+|.+|+++ ||.++ +++++
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~-~~~~~--- 182 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALV-DDATH--- 182 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEE-EEECH---
T ss_pred EEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccC-ccccH---
Confidence 99999999999999999999999 8998 45789999999999998 99875 34443
Q ss_pred HHHHHHcCchhhHhh-CCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC
Q 001980 854 VEAARAANVHGFVSA-LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG 932 (987)
Q Consensus 854 ~~al~~a~l~~~i~~-lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~ 932 (987)
++++++.. +|+|+| |.+|||||||| |||++++|+||| ||+||+.+++.|+.
T Consensus 183 -------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-------- 234 (305)
T 2v9p_A 183 -------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-------- 234 (305)
T ss_dssp -------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------
T ss_pred -------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------
Confidence 23456666 888988 67899999999 999999999999 99999999998862
Q ss_pred CeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhh
Q 001980 933 RTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 933 ~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
++||++++..||+| ||++|+|++.|+|++| ++.|+++|..+.
T Consensus 235 -----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~~ 276 (305)
T 2v9p_A 235 -----LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRLD 276 (305)
T ss_dssp -----GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTTT
T ss_pred -----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHcc
Confidence 29999999999999 9999999999999999 578999987653
No 103
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=9.4e-35 Score=346.63 Aligned_cols=202 Identities=24% Similarity=0.323 Sum_probs=167.3
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..++++|++++|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ .+
T Consensus 356 ~~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~ 418 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LT 418 (607)
T ss_dssp EEEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CC
T ss_pred eEEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eE
Confidence 35899999999963 26899999999999999999999999999999999999999999762 37
Q ss_pred eEEEcCCCCC-chhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPAL-FATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|+|+||++.+ ++.||.||+..... ..... .....+.++.+ |+.........+||||||||++|||||+++
T Consensus 419 i~~v~Q~~~~~~~~tv~e~~~~~~~----~~~~~---~~~~~~~l~~~--~l~~~~~~~~~~LSGGe~QRv~iAraL~~~ 489 (607)
T 3bk7_A 419 VAYKPQYIKAEYEGTVYELLSKIDS----SKLNS---NFYKTELLKPL--GIIDLYDRNVEDLSGGELQRVAIAATLLRD 489 (607)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHHH----HHHHC---HHHHHHTHHHH--TCTTTTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEEEecCccCCCCCcHHHHHHhhhc----cCCCH---HHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 9999999876 45699999875300 00000 00112223333 555556777889999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeC--CEEEEecChHHHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQ--GQVVETGTHEELIA 325 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 325 (987)
|++|||||||++||+.++..+.+.|+++. .|+|+|+|||+++++.. ||||++|++ |++...|++++++.
T Consensus 490 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999999999999874 48999999999999875 899999986 88888999988765
No 104
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7.2e-35 Score=344.53 Aligned_cols=202 Identities=24% Similarity=0.321 Sum_probs=168.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..++++|+++.|++ ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++ .+
T Consensus 286 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~ 348 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LT 348 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CC
T ss_pred eEEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ce
Confidence 35899999999963 26899999999999999999999999999999999999999999862 36
Q ss_pred eEEEcCCCCC-chhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPAL-FATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|+|+||++.. ++.||.||+..... .... ......+.++.+ |+.........+||||||||++|||||+.+
T Consensus 349 i~~v~Q~~~~~~~~tv~~~~~~~~~----~~~~---~~~~~~~~l~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 349 VAYKPQYIKADYEGTVYELLSKIDA----SKLN---SNFYKTELLKPL--GIIDLYDREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHHH----HHHT---CHHHHHHTTTTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEEEecCCcCCCCCcHHHHHHhhhc----cCCC---HHHHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 9999999876 45699998864200 0000 001112334444 666667788889999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeC--CEEEEecChHHHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQ--GQVVETGTHEELIA 325 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 325 (987)
|++|||||||++||+.++..+.+.|+++. .|+|+|+|||+++++.. ||||++|++ |+++..|++++++.
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999874 48999999999999875 899999986 78888999988764
No 105
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.8e-34 Score=338.23 Aligned_cols=201 Identities=18% Similarity=0.227 Sum_probs=167.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..++++|+++.|++ ..|++.||++++||+++|+||||||||||+++|+|+++|++|+|.+++ ..
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~ 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QI 331 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CC
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------ee
Confidence 35899999999963 358888999999999999999999999999999999999999999876 36
Q ss_pred eEEEcCCCCC-chhcHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 178 IGLVNQEPAL-FATTILENILYGKPEA---TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 178 i~~v~Q~~~l-~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
++|++|++.. +..||+||+.+..... ....+ .+.++.+ |+.........+|||||||||+|||||
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~~~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFF---------EEVTKRL--NLHRLLESNVNDLSGGELQKLYIAATL 400 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHH---------HHTTTTT--TGGGCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred eEeechhcccccCCCHHHHHHHhhhhccchhHHHH---------HHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999865 4679999998642211 11111 1223333 666667778889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeC--CEEEEecChHHHHH
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQ--GQVVETGTHEELIA 325 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 325 (987)
+.+|++|||||||++||+.++..+.+.|+++. .|+|+|+||||++++.. ||||++|++ |.+...+++.++..
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 99999999999999999999999999999885 48999999999999876 899999986 55666777666543
No 106
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-33 Score=330.09 Aligned_cols=198 Identities=24% Similarity=0.352 Sum_probs=162.4
Q ss_pred EeEEEECCCCCCccceeeeeEEEeCC-----cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 103 KNVTFSYPSRPDVIIFRDFSIFFPAG-----KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 103 ~~~~~~y~~~~~~~~l~~i~l~i~~G-----~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
++++|+|++. ..+++++||++.+| |+++|+||||||||||+++|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5677888642 34789999999998 7899999999999999999999999999973 11 236
Q ss_pred eEEEcCCCCC-chhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 178 IGLVNQEPAL-FATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 178 i~~v~Q~~~l-~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
++|++|++.. |+.|+++|+...... ...+...++ ++.+ |+.........+|||||||||+|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~---------l~~l--~l~~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDV---------VKPL--RIDDIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHT---------HHHH--TSTTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHH---------HHHc--CChhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999754 577999998643221 122222222 2222 5555567788899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeC--CEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQ--GQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~~ 326 (987)
.+|+||||||||++||+.++..+.+.|+++. .|+|+|+|||+++++.. ||||++|++ |+++..|++++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999999874 48999999999999876 899999986 899999999999875
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.98 E-value=5.9e-33 Score=339.32 Aligned_cols=206 Identities=26% Similarity=0.380 Sum_probs=140.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHH---------------------HHHhccCCCC-------CceEEECCccCC
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVI---------------------ALIERFYDPT-------AGKVMIDGKDIR 812 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~---------------------~lL~rl~~p~-------~G~I~idG~di~ 812 (987)
.+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++.
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 589999999999999999999999999998 8889999998 556677776654
Q ss_pred CCCHHHHhcccEEEccccccc--------------------cccHHHHhccCCC-CCC--HHHH-----HH------HHH
Q 001980 813 RLNLKSLRLKIGLVQQEPALF--------------------AASIFDNIAYGKE-GAT--EAEV-----VE------AAR 858 (987)
Q Consensus 813 ~i~l~~lR~~i~~VpQdp~lF--------------------~gTIreNL~~~~~-~~s--d~ei-----~~------al~ 858 (987)
.. .|+.+++|+|.+.++ ..|++||+.+... ... +.+. .+ .++
T Consensus 112 ~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 112 RN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp -------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred cc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 32 255667777765432 4589999976421 001 1111 11 122
Q ss_pred HcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeE
Q 001980 859 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA--ILLLDEATSALDAESECVLQEALERLM-RGRTT 935 (987)
Q Consensus 859 ~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~--ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~Tv 935 (987)
..++.+. -++.++ ..||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +++||
T Consensus 188 ~~gL~~~------~~~~~~----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tv 257 (670)
T 3ux8_A 188 NVGLDYL------TLSRSA----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL 257 (670)
T ss_dssp HTTCTTC------CTTCBG----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEE
T ss_pred HcCCchh------hhcCCc----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 2222211 123334 4699999999999999999988 999999999999999999999999875 58999
Q ss_pred EEEecCchhhhccCEEEEE------eCCEEEEecChhHHhcCCCchHHHHH
Q 001980 936 VLVAHRLSTIRGVDCIGVV------QDGRIVEQGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 936 I~IaHRl~ti~~~D~Iivl------~~G~ive~Gt~~eLl~~~~g~f~~l~ 980 (987)
|+|+|+++.+..||+|++| ++|++++.|+++++.+.+...+....
T Consensus 258 i~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 308 (670)
T 3ux8_A 258 IVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYL 308 (670)
T ss_dssp EEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHHH
T ss_pred EEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHHh
Confidence 9999999998889999999 89999999999999987554444433
No 108
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.98 E-value=8.5e-32 Score=330.48 Aligned_cols=197 Identities=25% Similarity=0.396 Sum_probs=164.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
..|...|++++|.+ .++|+|+||+|++||++||+|+||||||||+++|.| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 36888899999953 469999999999999999999999999999999995 554 5655421 124
Q ss_pred cEEEcccc-cc-ccccHHHHhccCCCCCCHHHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 823 IGLVQQEP-AL-FAASIFDNIAYGKEGATEAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 823 i~~VpQdp-~l-F~gTIreNL~~~~~~~sd~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
++|++|++ .+ ...|+++|+.+..... ++++.++++..++. +...+ ++ ..||||||||++|||||+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~-------~~----~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAM-------PI----SALSGGWKMKLALARAVL 564 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHS-------BG----GGCCHHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcC-------Cc----ccCCHHHHHHHHHHHHHh
Confidence 78999986 34 4569999997521112 77888999999884 44332 23 359999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEE-EecChhHHhc
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIV-EQGSHSELVS 970 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv-e~Gt~~eLl~ 970 (987)
++|+||||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999999998 68999999999999875 8999999999997 5799999874
No 109
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.97 E-value=1.8e-36 Score=329.36 Aligned_cols=236 Identities=15% Similarity=0.228 Sum_probs=185.5
Q ss_pred HcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCccEEEEeEEEEC
Q 001980 30 RNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSY 109 (987)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y 109 (987)
..+..+-+.+.+++.+... ..++..+...+..+.++..+.+|+.++++.+++... .. .. .+...+.|+++||+|+|
T Consensus 36 a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~-~~-~~-~~~~~~~i~~~~vs~~y 111 (305)
T 2v9p_A 36 ALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT-GE-GS-WKSILTFFNYQNIELIT 111 (305)
T ss_dssp HHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC-SS-CC-THHHHHHHHHTTCCHHH
T ss_pred HHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CC-Cc-ccccCCeEEEEEEEEEc
Confidence 3344455566665555444 478889999999999999999999999976432211 10 00 01112348899999999
Q ss_pred CCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCch
Q 001980 110 PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA 189 (987)
Q Consensus 110 ~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~ 189 (987)
+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|+|++|+
T Consensus 112 ~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~ 166 (305)
T 2v9p_A 112 F----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWL 166 (305)
T ss_dssp H----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGG
T ss_pred C----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccc
Confidence 6 35899999999999999999999999999999999999 7888 467899999999
Q ss_pred hcHHH-HHhcCCCCCCHHHHHHHHHHHhHHHHHHh-CCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 001980 190 TTILE-NILYGKPEATMAEVEAAASAANAHSFITL-LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267 (987)
Q Consensus 190 ~tv~e-ni~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts 267 (987)
+|+++ ||.++. ..+. .++++++. +|+|++ |.+|||||||| ||||+++|+||| ||
T Consensus 167 ~ti~~~ni~~~~-~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts 222 (305)
T 2v9p_A 167 ASLADTRAALVD-DATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TS 222 (305)
T ss_dssp GGGTTCSCEEEE-EECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EE
T ss_pred ccHHHHhhccCc-cccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----EC
Confidence 99998 999863 2222 23456666 888887 77999999999 999999999999 99
Q ss_pred CCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHH
Q 001980 268 ALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 335 (987)
Q Consensus 268 ~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 335 (987)
+||+.+++.+.. +|||++.+..||+| +|++|++++.|+++++ .+.|.+++.
T Consensus 223 ~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~ 273 (305)
T 2v9p_A 223 NIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWG 273 (305)
T ss_dssp SSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTT
T ss_pred CCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHH
Confidence 999999887752 29999999999999 9999999999999999 566766543
No 110
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=5.3e-30 Score=314.93 Aligned_cols=205 Identities=29% Similarity=0.441 Sum_probs=152.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHH---------HHHHcCCCCC------cc------EEEECCEeCCCCC---HH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVV---------SLIERFYDPN------AG------HVLLDNVDIKTLQ---LR 172 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl---------~~l~g~~~~~------~G------~i~~~g~~~~~~~---~~ 172 (987)
.|+|+||+|++|++++|+|+||||||||+ +.+.|...+. +| .+.++..++.... +.
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 69999999999999999999999999997 3444443332 23 3455555543211 00
Q ss_pred -------HH-------------------------------hcceEEEcCCCCCch-------------------------
Q 001980 173 -------WL-------------------------------RDQIGLVNQEPALFA------------------------- 189 (987)
Q Consensus 173 -------~~-------------------------------~~~i~~v~Q~~~l~~------------------------- 189 (987)
.+ .+..||++|+..+++
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 00 123577777765543
Q ss_pred --------hcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCCCCChHHHHHHHHHHHhccCC---
Q 001980 190 --------TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYST-QVGERGVQLSGGQKQRIAIARAMLKNP--- 257 (987)
Q Consensus 190 --------~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~~LSgGqkqRialARal~~~~--- 257 (987)
.|+.|++.|.... ....+ ..+.+..+ |+.. .+++.+.+|||||||||+|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~---~~~~~------~~~~L~~v--GL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNI---PSIKR------TLQVLHDV--GLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTC---HHHHH------HHHHHHHT--TGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred CCHHHHhhCCHHHHHHHHhcc---hhHHH------HHHHHHHc--CCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 3566666554321 11111 12234444 5543 468899999999999999999999876
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEEE------eCCEEEEecChHHHHHhhhhH
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGAY 330 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~ 330 (987)
+||||||||++||+.+++.+++.|+++. +|+|||+|||+++.+..||+|++| ++|+|+++|+++++.+..+.|
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~sy 907 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSY 907 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchH
Confidence 7999999999999999999999999885 589999999999999899999999 899999999999998876655
Q ss_pred HH
Q 001980 331 AS 332 (987)
Q Consensus 331 ~~ 332 (987)
..
T Consensus 908 t~ 909 (916)
T 3pih_A 908 TG 909 (916)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 111
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=1.3e-29 Score=293.55 Aligned_cols=201 Identities=18% Similarity=0.246 Sum_probs=151.8
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--------------------------------------CCCce
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--------------------------------------PTAGK 803 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--------------------------------------p~~G~ 803 (987)
+|+++||++++| +++|+|+||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 699999999999 999999999999999999966553 45788
Q ss_pred EEECCccCCCCCHHHHhcc-cEEEccccccccccHHHHhccCCCCCCH--------------------------------
Q 001980 804 VMIDGKDIRRLNLKSLRLK-IGLVQQEPALFAASIFDNIAYGKEGATE-------------------------------- 850 (987)
Q Consensus 804 I~idG~di~~i~l~~lR~~-i~~VpQdp~lF~gTIreNL~~~~~~~sd-------------------------------- 850 (987)
+++||.+++..++.+++.. +++++|++.++-++..++..+-......
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999987777887777 7999999988766655443321111100
Q ss_pred ----------------------------------HHHHHHHHHcCchh--hHhh-------CCCcCCC---ccCCCCCC-
Q 001980 851 ----------------------------------AEVVEAARAANVHG--FVSA-------LPNAYKT---PVGERGVQ- 883 (987)
Q Consensus 851 ----------------------------------~ei~~al~~a~l~~--~i~~-------lp~gldt---~vge~G~~- 883 (987)
+.+.+.++..++.+ +... -+.|++. .+..++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 11111122211111 0000 0112222 23333333
Q ss_pred -------CChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEE
Q 001980 884 -------LSGGQKQRIAIARAVLKNP--AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVV 954 (987)
Q Consensus 884 -------LSgGQrQrlaLARAllr~p--~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl 954 (987)
||||||||++|||+|+++| ++|||||||++||+.+...|.+.|++..+++|||+|||+++.+..||+|+||
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 7999999999999999999 9999999999999999999999999988889999999999998889999999
Q ss_pred ----eCCEEEEec
Q 001980 955 ----QDGRIVEQG 963 (987)
Q Consensus 955 ----~~G~ive~G 963 (987)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999987653
No 112
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=5.9e-29 Score=302.43 Aligned_cols=214 Identities=24% Similarity=0.351 Sum_probs=160.4
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCC-------CCCcc------------
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIE-RFY-------DPNAG------------ 157 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~-g~~-------~~~~G------------ 157 (987)
..++++|++. ..|+|+||+|++|++++|+|+||||||||++.|+ |.+ .+..|
T Consensus 628 ~~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 699 (972)
T 2r6f_A 628 RWLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLD 699 (972)
T ss_dssp CEEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCS
T ss_pred eEEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccc
Confidence 3588888852 2689999999999999999999999999999864 211 12233
Q ss_pred -EEEECCEeCCCC---CHH-------HH---------hcceEEEcCCCCCc-----------------------------
Q 001980 158 -HVLLDNVDIKTL---QLR-------WL---------RDQIGLVNQEPALF----------------------------- 188 (987)
Q Consensus 158 -~i~~~g~~~~~~---~~~-------~~---------~~~i~~v~Q~~~l~----------------------------- 188 (987)
.|.+++.++... ++. .+ .+.+||++|.+.+-
T Consensus 700 ~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~c 779 (972)
T 2r6f_A 700 KVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPC 779 (972)
T ss_dssp EEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEEC
T ss_pred eEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccc
Confidence 478888887432 111 11 12468888853210
Q ss_pred --------------------------hhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCCCCCh
Q 001980 189 --------------------------ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYST-QVGERGVQLSG 241 (987)
Q Consensus 189 --------------------------~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~~LSg 241 (987)
..|+.||+.|.... ....+ ..+.++.+ |+.. ..+....+|||
T Consensus 780 e~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~---~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSG 848 (972)
T 2r6f_A 780 EVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI---PKIKR------KLETLYDV--GLGYMKLGQPATTLSG 848 (972)
T ss_dssp TTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC---HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCH
T ss_pred cccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc---hhHHH------HHHHHHHc--CCCcccccCchhhCCH
Confidence 12556666553211 11111 12345555 6665 67888899999
Q ss_pred HHHHHHHHHHHhccCC---CEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEEE------eC
Q 001980 242 GQKQRIAIARAMLKNP---KILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVI------QQ 311 (987)
Q Consensus 242 GqkqRialARal~~~~---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l------~~ 311 (987)
||||||+|||||+++| ++|||||||++||+.+.+.+.+.|.++. .|+|||+|||+++.+..||+|++| ++
T Consensus 849 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~ 928 (972)
T 2r6f_A 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRG 928 (972)
T ss_dssp HHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSC
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCC
Confidence 9999999999999875 9999999999999999999999999885 589999999999998889999999 68
Q ss_pred CEEEEecChHHHHHhhhhH
Q 001980 312 GQVVETGTHEELIAKAGAY 330 (987)
Q Consensus 312 G~i~~~g~~~~l~~~~~~~ 330 (987)
|+|+..|+++++.+....|
T Consensus 929 G~Iv~~g~~~el~~~~~~~ 947 (972)
T 2r6f_A 929 GQIVAVGTPEEVAEVKESH 947 (972)
T ss_dssp CSEEEEESHHHHHTCTTCH
T ss_pred CEEEEecCHHHHHhCchhH
Confidence 9999999999998754444
No 113
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=5e-29 Score=303.84 Aligned_cols=214 Identities=27% Similarity=0.381 Sum_probs=156.9
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHH-HHcCC-------CC---------------
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSL-IERFY-------DP--------------- 154 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~-l~g~~-------~~--------------- 154 (987)
..++++|+++. .|+|+||+|++|++++|+|+||||||||++. |.|.+ +|
T Consensus 501 ~~L~v~~l~~~--------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTRN--------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEET--------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeeec--------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 45999999861 5999999999999999999999999999996 66543 23
Q ss_pred ---Ccc-------EEEECCEeCCCCCH----------HHHhc---------ceEEEcCCC--------------------
Q 001980 155 ---NAG-------HVLLDNVDIKTLQL----------RWLRD---------QIGLVNQEP-------------------- 185 (987)
Q Consensus 155 ---~~G-------~i~~~g~~~~~~~~----------~~~~~---------~i~~v~Q~~-------------------- 185 (987)
.+| .|.+++.++...+. +.+|. ..+|.++..
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 456 67889888754321 12222 122322210
Q ss_pred --CC------------------------ch-hcHHHHHhcCCC-----CCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cc
Q 001980 186 --AL------------------------FA-TTILENILYGKP-----EATMAEVEAAASAANAHSFITLLPNGYST-QV 232 (987)
Q Consensus 186 --~l------------------------~~-~tv~eni~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~ 232 (987)
.+ +. .||.||+.+... ....... ....+.++.+ |+.. .+
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~------~~~~~~L~~~--gL~~~~l 724 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAI------FRALDTLREV--GLGYLRL 724 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHH------HHHHHHHHHT--TCTTSBT
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHH------HHHHHHHHHc--CCCcccc
Confidence 00 11 255555543210 0000111 1123445555 6655 46
Q ss_pred cCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEE
Q 001980 233 GERGVQLSGGQKQRIAIARAMLKN---PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAV 308 (987)
Q Consensus 233 ~~~g~~LSgGqkqRialARal~~~---~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~ 308 (987)
+....+|||||||||+|||+|+++ |+||||||||++||+...+.+.+.|+++. .|+|||+|||+++++..||+|++
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~ 804 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLD 804 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE
Confidence 888899999999999999999996 79999999999999999999999999885 58999999999999977999999
Q ss_pred E------eCCEEEEecChHHHHHhh
Q 001980 309 I------QQGQVVETGTHEELIAKA 327 (987)
Q Consensus 309 l------~~G~i~~~g~~~~l~~~~ 327 (987)
| ++|+|+..|+++++.+..
T Consensus 805 L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 805 IGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp ECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred ECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 9 699999999999987654
No 114
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-32 Score=317.89 Aligned_cols=192 Identities=14% Similarity=0.053 Sum_probs=155.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc-e-EEECCccCCCCCHHHHh
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG-K-VMIDGKDIRRLNLKSLR 820 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G-~-I~idG~di~~i~l~~lR 820 (987)
+.++++||+++|+ ++||+|++|++++|+||||||||||+++|.|++.|++| + |++|| +.|
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg---------~~~ 178 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL---------DPQ 178 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC---------CTT
T ss_pred chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC---------Ccc
Confidence 3578888988882 79999999999999999999999999999999999999 9 99998 137
Q ss_pred cccEEEcccccccc----ccHHHHhccCCCC---C-CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 821 LKIGLVQQEPALFA----ASIFDNIAYGKEG---A-TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 821 ~~i~~VpQdp~lF~----gTIreNL~~~~~~---~-sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+.++++||++.+|. .|+++|+ ++... . .++.+.++++.. |++.... ..+||||||||+
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrl 244 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQL 244 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHH
Confidence 88999999996553 4899999 65321 1 111111222222 3443332 568999999999
Q ss_pred HHHHH--HccCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCch------hh-hccCE-----EEE
Q 001980 893 AIARA--VLKNPAI----LLLDE-ATSALDAESECVLQEALERLMRGRTTVLVAHRLS------TI-RGVDC-----IGV 953 (987)
Q Consensus 893 aLARA--llr~p~I----LlLDE-aTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~------ti-~~~D~-----Iiv 953 (987)
+|||| |+++|++ ||||| ||++||+. ...+.+.+++. +.|+|+|+|+.+ .+ ..||+ |++
T Consensus 245 alAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~ 321 (460)
T 2npi_A 245 GQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFF 321 (460)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEE
T ss_pred HHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEE
Confidence 99999 9999999 99999 99999999 77777777664 789999999987 44 34799 999
Q ss_pred Ee-CCEEEEecChhHHhc
Q 001980 954 VQ-DGRIVEQGSHSELVS 970 (987)
Q Consensus 954 l~-~G~ive~Gt~~eLl~ 970 (987)
|+ +|+|+ .|+++++.+
T Consensus 322 l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 322 IPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp ECCCTTCC-CCCHHHHHH
T ss_pred EeCCCcEE-ECCHHHHhh
Confidence 99 99999 999998853
No 115
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=2.7e-28 Score=282.42 Aligned_cols=200 Identities=20% Similarity=0.250 Sum_probs=148.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--------------------------------------CCccE
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--------------------------------------PNAGH 158 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--------------------------------------~~~G~ 158 (987)
++++++|++.+| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 789999999999 999999999999999999977664 45789
Q ss_pred EEECCEeCCCCCHHHHhcc-eEEEcCCCCCchhcHHHHHhcCCCCCC---------HHHHHHHHH---------------
Q 001980 159 VLLDNVDIKTLQLRWLRDQ-IGLVNQEPALFATTILENILYGKPEAT---------MAEVEAAAS--------------- 213 (987)
Q Consensus 159 i~~~g~~~~~~~~~~~~~~-i~~v~Q~~~l~~~tv~eni~~~~~~~~---------~~~~~~~~~--------------- 213 (987)
+.+||.+++..+...+... +++++|++.++..+..++..|-..... +..+.++.+
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999876666666665 899999987765544443332111110 000000000
Q ss_pred ---------------------------------HHhHHHHHHhC--CC----------------CCcc---cccCCCCC-
Q 001980 214 ---------------------------------AANAHSFITLL--PN----------------GYST---QVGERGVQ- 238 (987)
Q Consensus 214 ---------------------------------~~~~~~~~~~~--~~----------------g~~t---~~~~~g~~- 238 (987)
...+.+.+..+ |. |.+. .+..++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 00111122222 11 1111 23333333
Q ss_pred -------CChHHHHHHHHHHHhccCC--CEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEE
Q 001980 239 -------LSGGQKQRIAIARAMLKNP--KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVI 309 (987)
Q Consensus 239 -------LSgGqkqRialARal~~~~--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l 309 (987)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.+|+|||+|||+++.+..||++++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999987789999999999988889999999
Q ss_pred ----eCCEEEEe
Q 001980 310 ----QQGQVVET 317 (987)
Q Consensus 310 ----~~G~i~~~ 317 (987)
++|+++..
T Consensus 369 ~k~~~~G~~~~~ 380 (415)
T 4aby_A 369 EKQVEDGRTVSH 380 (415)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCceEEE
Confidence 99998754
No 116
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=2.1e-28 Score=298.84 Aligned_cols=215 Identities=26% Similarity=0.356 Sum_probs=158.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-c----CCC---CCccE-----------
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIE-R----FYD---PNAGH----------- 158 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~-g----~~~---~~~G~----------- 158 (987)
..++++|++. ..|+|+||+|++|++++|+|+||||||||+++|+ | .+. +..|.
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 3589999862 1689999999999999999999999999999854 2 222 23443
Q ss_pred --EEECCEeCCCC---CHH-------HH---------hcceEEEcCCCCCc-----------------------------
Q 001980 159 --VLLDNVDIKTL---QLR-------WL---------RDQIGLVNQEPALF----------------------------- 188 (987)
Q Consensus 159 --i~~~g~~~~~~---~~~-------~~---------~~~i~~v~Q~~~l~----------------------------- 188 (987)
|.+++.++... ++. .+ .+..+|++|...+-
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 45555555321 111 11 13468888853210
Q ss_pred --------------------------hhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCCCCCh
Q 001980 189 --------------------------ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYST-QVGERGVQLSG 241 (987)
Q Consensus 189 --------------------------~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~~LSg 241 (987)
..|+.|++.|.... ....+ ..+.++.+ |+.. .++....+|||
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~---~~~~~------~~~~L~~l--gL~~~~l~~~~~~LSG 866 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI---AGVHR------YLRTLVDV--GLGYVRLGQPAPTLSG 866 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC---HHHHH------HHHHHHHT--TGGGSBTTCCGGGSCH
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc---hHHHH------HHHHHHHc--CCCcccccCccccCCH
Confidence 11445555543211 11111 12345555 6665 67888999999
Q ss_pred HHHHHHHHHHHhccCC---CEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEEE------eC
Q 001980 242 GQKQRIAIARAMLKNP---KILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVI------QQ 311 (987)
Q Consensus 242 GqkqRialARal~~~~---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l------~~ 311 (987)
||||||+|||+|+++| ++|||||||++||+.+.+.+.+.|.++. .|+|||+|||+++.+..||+|++| ++
T Consensus 867 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~ 946 (993)
T 2ygr_A 867 GEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGG 946 (993)
T ss_dssp HHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSC
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCC
Confidence 9999999999999875 9999999999999999999999999885 589999999999998889999999 68
Q ss_pred CEEEEecChHHHHHhhhhHH
Q 001980 312 GQVVETGTHEELIAKAGAYA 331 (987)
Q Consensus 312 G~i~~~g~~~~l~~~~~~~~ 331 (987)
|+|+..|+++++.+....|.
T Consensus 947 G~Iv~~G~~~el~~~~~~~t 966 (993)
T 2ygr_A 947 GTVVAQGTPEDVAAVPASYT 966 (993)
T ss_dssp SEEEEEECHHHHHHCTTCHH
T ss_pred CEEEEecCHHHHHhCCHHHH
Confidence 99999999999987654443
No 117
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-30 Score=299.12 Aligned_cols=184 Identities=13% Similarity=0.120 Sum_probs=144.9
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-E-EEECCEeCCCCCHHHHhcceEEEcCCCCCch----hcH
Q 001980 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-H-VLLDNVDIKTLQLRWLRDQIGLVNQEPALFA----TTI 192 (987)
Q Consensus 119 ~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G-~-i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~----~tv 192 (987)
.++||++++|++++|+||||||||||+|+|+|+++|++| + |.+||. .++.++|+||++.+|. .|+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccCCeeeeccchhhcccccccch
Confidence 368999999999999999999999999999999999999 9 999981 2568999999985432 489
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH--hccCCCE----EEEeC-C
Q 001980 193 LENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA--MLKNPKI----LLLDE-A 265 (987)
Q Consensus 193 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa--l~~~~~i----lllDE-p 265 (987)
+||+ |+......... .....+.+..+ |+..... +.+||||||||++|||| |+.+|++ +|||| |
T Consensus 200 ~eni-~~~~~~~~~~~-----~~~~~~ll~~~--gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 200 QLPT-WGQSLTSGATL-----LHNKQPMVKNF--GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp TCTT-CSCBCBSSCCS-----SCCBCCEECCC--CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred hhhh-cccccccCcch-----HHHHHHHHHHh--CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 9999 75421000000 00001112222 5555443 67899999999999999 9999999 99999 9
Q ss_pred CCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCC------ccc-cCCE-----EEEEe-CCEEEEecChHHHHH
Q 001980 266 TSALDAGSESIVQEALDRLMVGRTTVVVAHRLS------TIR-NVDT-----VAVIQ-QGQVVETGTHEELIA 325 (987)
Q Consensus 266 ts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~------~~~-~~d~-----i~~l~-~G~i~~~g~~~~l~~ 325 (987)
|++||+. .+.+.+.++++ ++|+|+|||+.+ ++. .||+ |++|+ +|+++ .|+++++.+
T Consensus 270 ts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 270 ISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp GGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred ccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 9999999 66777776664 789999999988 544 4899 99999 99999 999988743
No 118
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=2.2e-26 Score=256.24 Aligned_cols=203 Identities=18% Similarity=0.230 Sum_probs=144.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc-----------------------------------------------
Q 001980 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERF----------------------------------------------- 796 (987)
Q Consensus 764 ~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl----------------------------------------------- 796 (987)
+++++++.+| .++|+|+||||||||+.+|..+
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678899999 9999999999999999999843
Q ss_pred ---CCCCCceEEECCccCCCCCHHHHhcccEEEccccccc-cccHHHHhccCCCCC----------------CHHHHHHH
Q 001980 797 ---YDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF-AASIFDNIAYGKEGA----------------TEAEVVEA 856 (987)
Q Consensus 797 ---~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF-~gTIreNL~~~~~~~----------------sd~ei~~a 856 (987)
+.+.+|.+++||.+++.-++..++..+++.||+..++ .|++.+|+... |.. +-+++.+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~ 173 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNES 173 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2344578999999886556667777899999998765 89999998642 210 00112221
Q ss_pred HHHc------------Cch-hhHhhCCCcCCCccC------CCCCCCChhHHHHHHHHHHHc----cCCCEEEEeCCCCC
Q 001980 857 ARAA------------NVH-GFVSALPNAYKTPVG------ERGVQLSGGQKQRIAIARAVL----KNPAILLLDEATSA 913 (987)
Q Consensus 857 l~~a------------~l~-~~i~~lp~gldt~vg------e~G~~LSgGQrQrlaLARAll----r~p~ILlLDEaTS~ 913 (987)
+... .+. .....++.|+++.++ .....||+|||||++|||||+ ++|++|||||||++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~ 253 (322)
T 1e69_A 174 FNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP 253 (322)
T ss_dssp HHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS
T ss_pred HHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 1110 000 001224446655432 234589999999999999996 78999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEE--EEEeCCEE-EEecChhHH
Q 001980 914 LDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCI--GVVQDGRI-VEQGSHSEL 968 (987)
Q Consensus 914 LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~I--ivl~~G~i-ve~Gt~~eL 968 (987)
||+.+...+.+.|++..+++|+|+|||+.+.+..||++ ++|++|+. +...+.++.
T Consensus 254 LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 254 LDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp CCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 99999999999999987788999999999888889987 88888864 444444443
No 119
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=3e-26 Score=255.05 Aligned_cols=195 Identities=20% Similarity=0.248 Sum_probs=140.8
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC----------------------------------------------
Q 001980 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY---------------------------------------------- 152 (987)
Q Consensus 119 ~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~---------------------------------------------- 152 (987)
+++++++.+| +++|+||||||||||+++|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578888999 99999999999999999998543
Q ss_pred ----CCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCc-hhcHHHHHhcCCCC---------------CCHHHHHHHH
Q 001980 153 ----DPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF-ATTILENILYGKPE---------------ATMAEVEAAA 212 (987)
Q Consensus 153 ----~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-~~tv~eni~~~~~~---------------~~~~~~~~~~ 212 (987)
.+.+|.+.+||.+++..+...+...+++.+|+..++ .+++.+|+.....+ ..++++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334578899999875555566666789999988766 78999998753211 0112222221
Q ss_pred HHHh------------H-HHHHHhCCCCCcccc------cCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCC
Q 001980 213 SAAN------------A-HSFITLLPNGYSTQV------GERGVQLSGGQKQRIAIARAML----KNPKILLLDEATSAL 269 (987)
Q Consensus 213 ~~~~------------~-~~~~~~~~~g~~t~~------~~~g~~LSgGqkqRialARal~----~~~~illlDEpts~L 269 (987)
...- + ......++.|+++.+ ...+..||||||||++|||||+ .+|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 1100 0 000123444555432 2345789999999999999996 689999999999999
Q ss_pred ChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEE--EEEeCCEE
Q 001980 270 DAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTV--AVIQQGQV 314 (987)
Q Consensus 270 D~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i--~~l~~G~i 314 (987)
|+...+.+.+.+.++.+++|+|++||+.+.+..||++ ++|++|+.
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 9999999999999886688999999998877789987 78888854
No 120
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=4.4e-28 Score=250.87 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=102.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHH
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreN 840 (987)
++|+|+ ++||++||+||||||||||+++|.|+ +|++|+|. +.++.. +...+|++++|+||++ ++|
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 589996 89999999999999999999999999 99999994 333331 2234688999999998 566
Q ss_pred h-ccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 001980 841 I-AYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919 (987)
Q Consensus 841 L-~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te 919 (987)
+ .++.+. .+.+........+.+.++. | | |||||++|||||+.+|++||||||||+ +.
T Consensus 79 l~~~~~~~--~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 79 IDPYLRPL--HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp -CTTTHHH--HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHHHHH--HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 6 332100 0000000000011112211 1 2 999999999999999999999999999 88
Q ss_pred HHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEE
Q 001980 920 CVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959 (987)
Q Consensus 920 ~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~i 959 (987)
..+.+.|++..+++|+| |||+++.+. ++...++|..
T Consensus 137 ~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 137 AQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp HHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred HHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 89999998874578999 999998654 3445666653
No 121
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=1.2e-27 Score=247.58 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=100.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHH
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILEN 195 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 195 (987)
.+|+|+ ++|++++|+||||||||||+++|+|+ +|++|+|.. .++. .+...++++|+|+||++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~-~~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILT-RPAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEE-ECSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEec-CCchhhhcceEEecCCH-------HHH
Confidence 478885 89999999999999999999999999 999999943 2332 11223467899999997 566
Q ss_pred H-hcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHH
Q 001980 196 I-LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274 (987)
Q Consensus 196 i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~ 274 (987)
+ .++.+. ...+........+.+.++. | | |||||++|||||+.+|++|||||||++ ++
T Consensus 79 l~~~~~~~--~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 79 IDPYLRPL--HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp -CTTTHHH--HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHHHHH--HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 6 332100 0000000000111222221 1 1 999999999999999999999999999 88
Q ss_pred HHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCC
Q 001980 275 SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQG 312 (987)
Q Consensus 275 ~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G 312 (987)
+.+.+.|.++.+|+|+| +||+++.+.. +...++|
T Consensus 137 ~~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G 170 (208)
T 3b85_A 137 AQMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSG 170 (208)
T ss_dssp HHHHHHHTTBCTTCEEE-EEEC---------------C
T ss_pred HHHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCc
Confidence 89999998874588999 9999876543 3344555
No 122
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.91 E-value=3.6e-28 Score=254.91 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=123.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH-HHHhcccEEEcccccccc-----
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL-KSLRLKIGLVQQEPALFA----- 834 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l-~~lR~~i~~VpQdp~lF~----- 834 (987)
..|+||||+|++|+.+||+||||||||||+++|.|++ | |+|.+ |+++.+.+. ...|..++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 888765432 335788999999986663
Q ss_pred ------ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH-----HHHHccCCC
Q 001980 835 ------ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI-----ARAVLKNPA 903 (987)
Q Consensus 835 ------gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL-----ARAllr~p~ 903 (987)
+++++| .++. +++++.++++..... .+. .+||||||||++| ||+++++|+
T Consensus 87 ~~~l~~~~~~~~-~~g~---~~~~i~~~l~~~~~~------------il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT---LKSEYDKAKEQNKIC------------LFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEE---EHHHHHHHHHTTCEE------------EEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCC---cHHHHHHHHhCCCcE------------EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 444555 2332 345666666553321 111 4699999999999 999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeC
Q 001980 904 ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 956 (987)
Q Consensus 904 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~ 956 (987)
+++|||||+++|.+++..|++.+.+..+++| ++| +..+|+|+|+++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999999988776777 678 577899888765
No 123
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=1.4e-25 Score=226.02 Aligned_cols=149 Identities=18% Similarity=0.223 Sum_probs=108.1
Q ss_pred eeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccc--cccccHHHHhc
Q 001980 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPA--LFAASIFDNIA 842 (987)
Q Consensus 765 ~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~--lF~gTIreNL~ 842 (987)
||||+|++||.++|+|+||||||||++++++ |... ++.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 2111 2334454 67788862 44454444442
Q ss_pred cCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH---
Q 001980 843 YGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE--- 919 (987)
Q Consensus 843 ~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te--- 919 (987)
. ...... ..|+...+.. -...|+|||||++||||+..+|++|+|||||++||+.++
T Consensus 64 ~---------~~~~~~-----------~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y---------IVSKRL-----------QLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H---------HHHHHH-----------HTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H---------HHHHHH-----------hCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 111111 1233333322 234699999999999999999999999999999999944
Q ss_pred -------------HHHHHHHHHHc-CCCeEEEEecCchhhhccCEE
Q 001980 920 -------------CVLQEALERLM-RGRTTVLVAHRLSTIRGVDCI 951 (987)
Q Consensus 920 -------------~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~I 951 (987)
+.+++.|++.. +|.|+|+|+|+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 77777766543 489999999999999887765
No 124
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.90 E-value=4.8e-24 Score=240.60 Aligned_cols=82 Identities=24% Similarity=0.329 Sum_probs=75.6
Q ss_pred CCCCCChhHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEE
Q 001980 880 RGVQLSGGQKQRIAIARAVL------KNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIG 952 (987)
Q Consensus 880 ~G~~LSgGQrQrlaLARAll------r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Ii 952 (987)
....||||||||++|||||+ ++|++|||||||++||+.+...+.+.|++.. .|+|||+|+|+++.+..||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 34579999999999999999 7999999999999999999999999999875 5799999999999988899999
Q ss_pred EEeCCEEEE
Q 001980 953 VVQDGRIVE 961 (987)
Q Consensus 953 vl~~G~ive 961 (987)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999976
No 125
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.90 E-value=4.5e-24 Score=240.81 Aligned_cols=84 Identities=26% Similarity=0.355 Sum_probs=77.1
Q ss_pred cCCCCCCChHHHHHHHHHHHhc------cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCE
Q 001980 233 GERGVQLSGGQKQRIAIARAML------KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDT 305 (987)
Q Consensus 233 ~~~g~~LSgGqkqRialARal~------~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~ 305 (987)
+....+||||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|.++. .|+|||+|||+++....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 3466789999999999999999 7999999999999999999999999999885 48999999999998778999
Q ss_pred EEEEeCCEEEE
Q 001980 306 VAVIQQGQVVE 316 (987)
Q Consensus 306 i~~l~~G~i~~ 316 (987)
|++|++|++++
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999875
No 126
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.90 E-value=3.8e-26 Score=253.77 Aligned_cols=141 Identities=17% Similarity=0.189 Sum_probs=118.0
Q ss_pred EEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEE
Q 001980 747 LRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 826 (987)
Q Consensus 747 f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~V 826 (987)
|++++| | .++++++||.|++|+.++|+|+||||||||+++|.|+++|++|.|.++|.+ ++.+..+|+.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 666666 6 248999999999999999999999999999999999999999999999976 33333345555554
Q ss_pred ccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 001980 827 QQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILL 906 (987)
Q Consensus 827 pQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILl 906 (987)
+| |||+||++|||||.++|++||
T Consensus 223 ~g---------------------------------------------------------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 223 FG---------------------------------------------------------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp CB---------------------------------------------------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred eC---------------------------------------------------------CChhHHHHHHHHhhhCCCEEE
Confidence 30 799999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCC-eEEEEecCchhhhccCEEEEEeCCEE
Q 001980 907 LDEATSALDAESECVLQEALERLMRGR-TTVLVAHRLSTIRGVDCIGVVQDGRI 959 (987)
Q Consensus 907 LDEaTS~LD~~te~~I~~~l~~~~~~~-TvI~IaHRl~ti~~~D~Iivl~~G~i 959 (987)
|||||+. .+++.|+....++ |+|+++|+++....+|||++|++|+.
T Consensus 246 ldE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 246 LGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp ECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 9999982 2456676666665 79999999998888999999998853
No 127
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=4.6e-25 Score=222.15 Aligned_cols=149 Identities=17% Similarity=0.223 Sum_probs=107.7
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCC--CchhcHHHHHh
Q 001980 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPA--LFATTILENIL 197 (987)
Q Consensus 120 ~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~~tv~eni~ 197 (987)
|+||++++||+++|+||||||||||++++.+ |...++ .+.++ ++++|++. .+.+++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~--------~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS--------SDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE--------HHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc--------cHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 222222 12222 67788763 23334433322
Q ss_pred cCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChH-----
Q 001980 198 YGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG----- 272 (987)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~----- 272 (987)
. .. .. .+..|+.+.+... ...|||||||++||||+..+|++++|||||++||+.
T Consensus 64 ~------------~~-----~~---~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y------------IV-----SK---RLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H------------HH-----HH---HHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H------------HH-----HH---HHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 00 01 1122555555443 356999999999999999999999999999999999
Q ss_pred -----------HHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEE
Q 001980 273 -----------SESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTV 306 (987)
Q Consensus 273 -----------~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i 306 (987)
..+.+.+.++++. +|.|+|++||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 4577888877664 489999999999988776654
No 128
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=7.4e-25 Score=221.31 Aligned_cols=147 Identities=14% Similarity=0.166 Sum_probs=106.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHH
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVE 209 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 209 (987)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+. +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~-------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK-------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh--------
Confidence 689999999999999999999985 556665543322113466899999986 2223331 100
Q ss_pred HHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH-----hccCCCEEEEeC--CCCCCChHHHHHHHHHHH
Q 001980 210 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA-----MLKNPKILLLDE--ATSALDAGSESIVQEALD 282 (987)
Q Consensus 210 ~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa-----l~~~~~illlDE--pts~LD~~~~~~i~~~l~ 282 (987)
.++ .+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.+.
T Consensus 63 -------------~~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 63 -------------FFT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp -------------TCC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred -------------cCC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 000 1135677788999999999999996 999999999999 999999999999999887
Q ss_pred hhhCCCeEEEEcC---CCCcccc-CCEEEEEeCCEEEE
Q 001980 283 RLMVGRTTVVVAH---RLSTIRN-VDTVAVIQQGQVVE 316 (987)
Q Consensus 283 ~~~~~~tvi~vtH---~~~~~~~-~d~i~~l~~G~i~~ 316 (987)
+ .+.|+|++|| +.+++.. +|+ .+|++++
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 6 3677999996 6666655 566 4566654
No 129
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=5.2e-25 Score=222.42 Aligned_cols=148 Identities=13% Similarity=0.127 Sum_probs=109.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHH
Q 001980 775 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVV 854 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~ 854 (987)
+++|+||||||||||+++|.|++. |.++|.+..+......++++++++|++ +..+|+. +.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~-------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK-------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh--------
Confidence 689999999999999999999985 667887765443224678999999997 3334431 100
Q ss_pred HHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 001980 855 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA-----VLKNPAILLLDE--ATSALDAESECVLQEALE 927 (987)
Q Consensus 855 ~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA-----llr~p~ILlLDE--aTS~LD~~te~~I~~~l~ 927 (987)
+ .+ -+..++..+.+||||||||++|||| ++.+|++||||| ||+++|+.+.+.+.+.++
T Consensus 63 ------~-------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 63 ------F-------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp ------T-------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred ------c-------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 0 00 0123556667899999999999996 999999999999 999999999999999997
Q ss_pred HHcCCCeEEEEec---Cchhhhc-cCEEEEEeCCEEEEe
Q 001980 928 RLMRGRTTVLVAH---RLSTIRG-VDCIGVVQDGRIVEQ 962 (987)
Q Consensus 928 ~~~~~~TvI~IaH---Rl~ti~~-~D~Iivl~~G~ive~ 962 (987)
+ .+.|+|+++| +.+.+.. +|+ .+|+|++.
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEEC
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEEe
Confidence 6 4677999986 6666654 566 56777763
No 130
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.88 E-value=2.6e-25 Score=255.41 Aligned_cols=196 Identities=18% Similarity=0.198 Sum_probs=158.6
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCc---cCCCCC----
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK---DIRRLN---- 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~---di~~i~---- 815 (987)
+.++++|+++.|.. +.++|+++ |+|.+||++||+|+||||||||+++|.|+++|+.|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 35889999999953 34699999 999999999999999999999999999999999999999998 565432
Q ss_pred -HHHHhcccEEEccc--cccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 816 -LKSLRLKIGLVQQE--PALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 816 -l~~lR~~i~~VpQd--p~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
...+++.+++++|+ +....-|+.+|+.+. .+.... +...+..++ +...+||+|| ||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~------ae~~~~-~~~~v~~~l------------d~l~~lS~g~-qrv 266 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRI------AEDFRD-RGQHVLLIM------------DSLTRYAMAQ-REI 266 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHH------HHHHHT-TTCEEEEEE------------ECHHHHHHHH-HHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHH------HHHHHh-CCCCHHHHH------------HhHHHHHHHH-HHH
Confidence 45688999999995 344567899998642 122211 111111221 2245799999 999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-----CC-----eEEEEecCchhhhccCEEEEEeCCEEEEe
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-----GR-----TTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-----~~-----TvI~IaHRl~ti~~~D~Iivl~~G~ive~ 962 (987)
+|| +++|++ |+++|+.+...+++.+++..+ |+ ||+++||+++ ...||++++|.+|+|++.
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 999 999998 999999999999999988754 54 9999999999 677899999999999999
Q ss_pred cChhHHhcC
Q 001980 963 GSHSELVSR 971 (987)
Q Consensus 963 Gt~~eLl~~ 971 (987)
|++.++...
T Consensus 337 ~~~~~~~~~ 345 (438)
T 2dpy_A 337 RRLAEAGHY 345 (438)
T ss_dssp HHHHHTTCS
T ss_pred CCHHHccCC
Confidence 999988653
No 131
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.87 E-value=8.1e-26 Score=237.00 Aligned_cols=166 Identities=13% Similarity=0.152 Sum_probs=116.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcceEEEcCCCCCchhcH--H
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQIGLVNQEPALFATTI--L 193 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~v~Q~~~l~~~tv--~ 193 (987)
.|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++...++ ...++.++|++|++.+|+.-+ .
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 589999999999999999999999999999999999 6 99999 877654332 234568999999987775421 1
Q ss_pred HHHh--------cCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH-----HHHhccCCCEE
Q 001980 194 ENIL--------YGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI-----ARAMLKNPKIL 260 (987)
Q Consensus 194 eni~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial-----ARal~~~~~il 260 (987)
+++. +|.+ ..++.+++ +. +....++ .+||||||||++| ||+++.+|+++
T Consensus 88 ~~l~~~~~~~~~~g~~---~~~i~~~l---------~~---~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 88 DFLEYDNYANNFYGTL---KSEYDKAK---------EQ---NKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp CEEEEEEETTEEEEEE---HHHHHHHH---------HT---TCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred chhhhhhcccccCCCc---HHHHHHHH---------hC---CCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 2221 2211 22222222 21 2222232 5799999999999 89999999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeC
Q 001980 261 LLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ 311 (987)
Q Consensus 261 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~ 311 (987)
+|||||+++|..++..+.+.+.+..+++| ++| +..+|.|+++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999999999999988766666 678 567899988764
No 132
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.87 E-value=1.2e-24 Score=246.32 Aligned_cols=167 Identities=17% Similarity=0.169 Sum_probs=134.1
Q ss_pred cceeeeeEEEeCCc--------------------EEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHh
Q 001980 761 VVFKDFNLRIRAGQ--------------------SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 820 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge--------------------~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR 820 (987)
.+|++|||+|++|+ .+||+||||||||||+++|.|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999998764 2
Q ss_pred cccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh--HHHHHHHHHHH
Q 001980 821 LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG--QKQRIAIARAV 898 (987)
Q Consensus 821 ~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG--QrQrlaLARAl 898 (987)
.++++|++....-|++||+.++.+ ++.+.+.++..++.+. +..+ .||+| ||||++|||||
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~---~~~~~~~L~~~~L~~~--------~~~~-----~lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST---NFPPDTYLEKMKFYEY--------DFFI-----IISATRFKKNDIDIAKAI 171 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS---SCCHHHHHHHTTGGGC--------SEEE-----EEESSCCCHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch---HHHHHHHHHHcCCCcc--------CCeE-----EeCCCCccHHHHHHHHHH
Confidence 278999986557799999876643 2346667777776542 2112 28999 99999999999
Q ss_pred cc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc------C----CCeEEEEecCchh--hhc-cCEEE
Q 001980 899 LK----------NPAILLLDEATSALDAESECVLQEALERLM------R----GRTTVLVAHRLST--IRG-VDCIG 952 (987)
Q Consensus 899 lr----------~p~ILlLDEaTS~LD~~te~~I~~~l~~~~------~----~~TvI~IaHRl~t--i~~-~D~Ii 952 (987)
.+ +|++++|||||++||+.+...+.+.|++.. . ..++++-||.++. +.. +|+|.
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99 999999999999999999999999888763 1 2567778998875 544 56663
No 133
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.86 E-value=1.8e-24 Score=244.90 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=127.2
Q ss_pred cceeeeeEEEeCCc--------------------EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh
Q 001980 116 IIFRDFSIFFPAGK--------------------TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 116 ~~l~~i~l~i~~G~--------------------~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~ 175 (987)
.+|+++||++++|+ +++|+||||||||||+|+|+|+++|++|+|.++|.+..
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------- 108 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------- 108 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC------------
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc--------
Confidence 48999999999999 99999999999999999999999999999999997653
Q ss_pred cceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChH--HHHHHHHHHHh
Q 001980 176 DQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG--QKQRIAIARAM 253 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgG--qkqRialARal 253 (987)
+.+|++|++...+.|+.||+.++.+.. ++.+.++..++. ..+..+ . |||| ||||++|||||
T Consensus 109 -~~~~v~q~~~~~~ltv~D~~g~~~~~~---~~~~~L~~~~L~--------~~~~~~----~-lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 109 -MERHPYKHPNIPNVVFWDLPGIGSTNF---PPDTYLEKMKFY--------EYDFFI----I-ISATRFKKNDIDIAKAI 171 (413)
T ss_dssp -CCCEEEECSSCTTEEEEECCCGGGSSC---CHHHHHHHTTGG--------GCSEEE----E-EESSCCCHHHHHHHHHH
T ss_pred -eeEEeccccccCCeeehHhhcccchHH---HHHHHHHHcCCC--------ccCCeE----E-eCCCCccHHHHHHHHHH
Confidence 128899997544569999987764322 233333333211 111111 2 9999 99999999999
Q ss_pred cc----------CCCEEEEeCCCCCCChHHHHHHHHHHHhhh------C----CCeEEEEcCCCCc--ccc-CCEE
Q 001980 254 LK----------NPKILLLDEATSALDAGSESIVQEALDRLM------V----GRTTVVVAHRLST--IRN-VDTV 306 (987)
Q Consensus 254 ~~----------~~~illlDEpts~LD~~~~~~i~~~l~~~~------~----~~tvi~vtH~~~~--~~~-~d~i 306 (987)
.+ +|++++|||||++||+.+++.+.+.++++. . ..++++.||.++. ++. +|+|
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99 999999999999999999999988887762 1 2567788998876 443 4554
No 134
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.85 E-value=7.5e-24 Score=243.22 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=153.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE---eCCCC-----
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV---DIKTL----- 169 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~---~~~~~----- 169 (987)
..++++|+++.|+. ...+|+++ |++.+|++++|+||||||||||+++|+|+.+|+.|.|.++|+ ++.++
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999963 24589999 999999999999999999999999999999999999999998 55432
Q ss_pred CHHHHhcceEEEcCC-CCCc-hhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHH
Q 001980 170 QLRWLRDQIGLVNQE-PALF-ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQR 246 (987)
Q Consensus 170 ~~~~~~~~i~~v~Q~-~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqR 246 (987)
....+++.++|++|+ ..++ ..|+.+|+.+.. ++.. . .+.+ ..+-+....||||| ||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~------------~--~~~~v~~~ld~l~~lS~g~-qr 265 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFR------------D--RGQHVLLIMDSLTRYAMAQ-RE 265 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHH------------T--TTCEEEEEEECHHHHHHHH-HH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHH------------h--CCCCHHHHHHhHHHHHHHH-HH
Confidence 134577889999995 3444 459999987631 1110 0 0111 01112356799999 99
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC-----CC-----eEEEEcCCCCccccCCEEEEEeCCEEEE
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-----GR-----TTVVVAHRLSTIRNVDTVAVIQQGQVVE 316 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-----~~-----tvi~vtH~~~~~~~~d~i~~l~~G~i~~ 316 (987)
++|| +.+|++ |++||+.+...+.+.+.++.+ |+ ||+++|||++ ...||++++|.+|+|+.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 9999 888888 999999999999999988754 53 9999999999 56689999999999999
Q ss_pred ecChHHH
Q 001980 317 TGTHEEL 323 (987)
Q Consensus 317 ~g~~~~l 323 (987)
+|+++++
T Consensus 336 ~~~~~~~ 342 (438)
T 2dpy_A 336 SRRLAEA 342 (438)
T ss_dssp CHHHHHT
T ss_pred eCCHHHc
Confidence 9887765
No 135
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.85 E-value=3e-23 Score=230.41 Aligned_cols=131 Identities=20% Similarity=0.278 Sum_probs=108.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENI 196 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni 196 (987)
+++++||.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+. +.....++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe--------------
Confidence 78999999999999999999999999999999999999999999998642 21112233455443
Q ss_pred hcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHH
Q 001980 197 LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 276 (987)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~ 276 (987)
| |||+||++|||||..+|++++|||||+. .
T Consensus 224 ------------------------------g-------------gg~~~r~~la~aL~~~p~ilildE~~~~-------e 253 (330)
T 2pt7_A 224 ------------------------------G-------------GNITSADCLKSCLRMRPDRIILGELRSS-------E 253 (330)
T ss_dssp ------------------------------B-------------TTBCHHHHHHHHTTSCCSEEEECCCCST-------H
T ss_pred ------------------------------C-------------CChhHHHHHHHHhhhCCCEEEEcCCChH-------H
Confidence 0 8999999999999999999999999982 3
Q ss_pred HHHHHHhhhCCC-eEEEEcCCCCccccCCEEEEEeCCE
Q 001980 277 VQEALDRLMVGR-TTVVVAHRLSTIRNVDTVAVIQQGQ 313 (987)
Q Consensus 277 i~~~l~~~~~~~-tvi~vtH~~~~~~~~d~i~~l~~G~ 313 (987)
+.+.++.+..|. |+|++||+.+....+||+++|.+|+
T Consensus 254 ~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 254 AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 455666665554 7999999999767799999998874
No 136
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.84 E-value=7.7e-23 Score=223.88 Aligned_cols=176 Identities=18% Similarity=0.241 Sum_probs=126.7
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC----HHHH--hcccEEEccccc-cc-c
Q 001980 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN----LKSL--RLKIGLVQQEPA-LF-A 834 (987)
Q Consensus 763 L~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----l~~l--R~~i~~VpQdp~-lF-~ 834 (987)
++++||++++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..+++++|++. ++ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688899999999999999999999999999999999999999999987653 2344 457999999997 65 4
Q ss_pred ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCC
Q 001980 835 ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA--ILLLDEATS 912 (987)
Q Consensus 835 gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~--ILlLDEaTS 912 (987)
.|+++|+.++.....+. ..++.+++.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d~---~lldt~gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDV---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCSE---EEECCCCCSSC-------CHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCcc---hHHhcCCCCcc-------hhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 58999997532100000 00111111111 11122 2488 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEec---------Cchhhhc-cCEEEEEeCCEEE
Q 001980 913 ALDAESECVLQEALERLMRGRTTVLVAH---------RLSTIRG-VDCIGVVQDGRIV 960 (987)
Q Consensus 913 ~LD~~te~~I~~~l~~~~~~~TvI~IaH---------Rl~ti~~-~D~Iivl~~G~iv 960 (987)
++|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99998653 22322 23789999999 3333333 4789999999753
No 137
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.83 E-value=7.3e-21 Score=212.25 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=74.9
Q ss_pred CCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEE
Q 001980 238 QLSGGQKQRIAIARAML---------KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAV 308 (987)
Q Consensus 238 ~LSgGqkqRialARal~---------~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~ 308 (987)
.||||||||++|||+|+ .+|+|||||||||+||+..++.+.+.+.++. .|+|++|| ++. .+|++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998874 79999999 444 7899999
Q ss_pred EeCCEEEEecChHHH
Q 001980 309 IQQGQVVETGTHEEL 323 (987)
Q Consensus 309 l~~G~i~~~g~~~~l 323 (987)
|++|++++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999988775
No 138
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.83 E-value=1.6e-23 Score=230.45 Aligned_cols=176 Identities=14% Similarity=0.165 Sum_probs=131.0
Q ss_pred ccccEEEEeEEEECCCCCCccceeeeeEE-----------------------EeCCcEEEEEcCCCCChHHHHHHHhccC
Q 001980 741 IRGEIELRHVDFAYPSRPDVVVFKDFNLR-----------------------IRAGQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 741 ~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~-----------------------I~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.++.|+++||++.|. |+++++++. +++|+.+||+|+||||||||+++|.|++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456799999999993 577887775 8999999999999999999999999999
Q ss_pred CCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC----CC-CCHHHHHHHHHHcCchhhHhhCCCc
Q 001980 798 DPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK----EG-ATEAEVVEAARAANVHGFVSALPNA 872 (987)
Q Consensus 798 ~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~----~~-~sd~ei~~al~~a~l~~~i~~lp~g 872 (987)
+|..|. .++++|+||+++|..|+++|+.+.. +. ...+.+.+.++..+ .|
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~---------~~ 168 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK---------SG 168 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH---------TT
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC---------CC
Confidence 997663 5699999999999889999996532 21 12233444444332 23
Q ss_pred CC-CccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh--ccC
Q 001980 873 YK-TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR--GVD 949 (987)
Q Consensus 873 ld-t~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~--~~D 949 (987)
.. ..+ ..|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.+ + .+|+|.|..+... ..+
T Consensus 169 ~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~ 237 (312)
T 3aez_A 169 SDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVS 237 (312)
T ss_dssp CSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHH
T ss_pred cccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHH
Confidence 22 333 3699999999999999999999999999999998622 1233333 3 4577888776642 245
Q ss_pred EEEEEeCCE
Q 001980 950 CIGVVQDGR 958 (987)
Q Consensus 950 ~Iivl~~G~ 958 (987)
|.+.+.+|+
T Consensus 238 R~~~~rd~~ 246 (312)
T 3aez_A 238 RFLAMRTTA 246 (312)
T ss_dssp HHHHHTTTG
T ss_pred HHHHHHhcc
Confidence 655554543
No 139
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.83 E-value=1e-22 Score=219.64 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=97.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccc-cHHHHhccCCCCCC---H
Q 001980 775 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGAT---E 850 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~g-TIreNL~~~~~~~s---d 850 (987)
++|||||||||||||+++|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. ||.||+.++..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999998743 3356889999999988754 99999988754221 1
Q ss_pred HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 001980 851 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 930 (987)
Q Consensus 851 ~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~ 930 (987)
+.+.+.++ .++...++ ..||||||||+++|||++. +++|||||++||+.. ..+.+.+.+
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~-- 139 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSK-- 139 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHT--
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHh--
Confidence 23333332 33333322 2599999999999999886 999999999999876 344444443
Q ss_pred CCCeEEEEecCchhhh
Q 001980 931 RGRTTVLVAHRLSTIR 946 (987)
Q Consensus 931 ~~~TvI~IaHRl~ti~ 946 (987)
.+++|+|.|+.+++.
T Consensus 140 -~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 140 -VVNIIPVIAKADTMT 154 (270)
T ss_dssp -TSEEEEEETTGGGSC
T ss_pred -cCcEEEEEeccccCC
Confidence 389999999988763
No 140
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.83 E-value=1.2e-20 Score=210.58 Aligned_cols=82 Identities=22% Similarity=0.238 Sum_probs=76.3
Q ss_pred CCChhHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEE
Q 001980 883 QLSGGQKQRIAIARAVL---------KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGV 953 (987)
Q Consensus 883 ~LSgGQrQrlaLARAll---------r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iiv 953 (987)
.||||||||++|||+|+ .+|+|||||||||+||+.....+.+.|.+.. .|+|++|| ++. .+|+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998863 79999999 454 8899999
Q ss_pred EeCCEEEEecChhHHh
Q 001980 954 VQDGRIVEQGSHSELV 969 (987)
Q Consensus 954 l~~G~ive~Gt~~eLl 969 (987)
|++|+|++.|+|+++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999883
No 141
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.83 E-value=1.2e-22 Score=219.11 Aligned_cols=146 Identities=18% Similarity=0.200 Sum_probs=94.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchh-cHHHHHhcCCCCCC---H
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEAT---M 205 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~---~ 205 (987)
.++|+||||||||||+++|+|+..|++|+|.++|.++... ..++.++|++|++.++.. ||.||+.||..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 4899999999999999999999999999999999887432 235679999999988866 99999999864221 2
Q ss_pred HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 001980 206 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 285 (987)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 285 (987)
+.+.+... .++...++ .+||||||||+++|||++. +++||||+++||+...+ + ++.+.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-~---l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-F---MKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-H---HHHHH
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-H---HHHHH
Confidence 23333222 12222221 2699999999999999886 99999999999998732 3 33333
Q ss_pred CCCeEEEEcCCCCcc
Q 001980 286 VGRTTVVVAHRLSTI 300 (987)
Q Consensus 286 ~~~tvi~vtH~~~~~ 300 (987)
+..++|+|.|+.+.+
T Consensus 139 ~~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 139 KVVNIIPVIAKADTM 153 (270)
T ss_dssp TTSEEEEEETTGGGS
T ss_pred hcCcEEEEEeccccC
Confidence 338999999987665
No 142
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.83 E-value=2.7e-23 Score=207.70 Aligned_cols=110 Identities=18% Similarity=0.219 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCC---CceEEECCccCCCCC---HHHHh-cccE----EEccccccccccHHHHhc
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPT---AGKVMIDGKDIRRLN---LKSLR-LKIG----LVQQEPALFAASIFDNIA 842 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~---~G~I~idG~di~~i~---l~~lR-~~i~----~VpQdp~lF~gTIreNL~ 842 (987)
++++|||+||||||||+++|.|+|+|+ .|.|++||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988887 77888 5788 899999988 222
Q ss_pred cCCCCCCHHHHHHHHHHcCchhhHhh-CCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 843 YGKEGATEAEVVEAARAANVHGFVSA-LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 843 ~~~~~~sd~ei~~al~~a~l~~~i~~-lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
+ . +++ .+++++++.. +| |+||.++|+ |||||||||+||||++++|+|
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGG
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCcc
Confidence 1 1 222 7899999999 99 999999995 999999999999999999987
No 143
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.83 E-value=1.7e-22 Score=221.06 Aligned_cols=175 Identities=18% Similarity=0.217 Sum_probs=125.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHH--hcceEEEcCCCC-Cchh
Q 001980 118 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ----LRWL--RDQIGLVNQEPA-LFAT 190 (987)
Q Consensus 118 l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~--~~~i~~v~Q~~~-l~~~ 190 (987)
++++||++++|++++|+||||||||||++.|+|+++|++|+|.++|.|+.... ...+ +..|+|++|++. +++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688999999999999999999999999999999999999999998876542 1223 357999999998 7755
Q ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCC
Q 001980 191 -TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK--ILLLDEATS 267 (987)
Q Consensus 191 -tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~--illlDEpts 267 (987)
|++||+.++.....+ . ..++.. |..........+|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d---------~---~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD---------V---VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCS---------E---EEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCc---------c---hHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 999999764210000 0 011111 33322233344688 999999999999999 99999 999
Q ss_pred CCChHHHHHHHHHHHhhhCCCeEEEEcCCCC---------cccc-CCEEEEEeCCEE
Q 001980 268 ALDAGSESIVQEALDRLMVGRTTVVVAHRLS---------TIRN-VDTVAVIQQGQV 314 (987)
Q Consensus 268 ~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~---------~~~~-~d~i~~l~~G~i 314 (987)
+||+.... +.+.+ ..+.|+|++||.-. .+.. .+.|.++..|+.
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99998542 12221 13889999999322 2222 467888888854
No 144
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.82 E-value=3.8e-24 Score=229.57 Aligned_cols=174 Identities=20% Similarity=0.187 Sum_probs=144.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-CceEEECCccCCCCCHHHHhcccEEEcc-----cccccc
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-AGKVMIDGKDIRRLNLKSLRLKIGLVQQ-----EPALFA 834 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~i~l~~lR~~i~~VpQ-----dp~lF~ 834 (987)
++|+++| +++|+.++|+||||||||||+++|.|+++|+ +|+|.++|.++..+. +..+++++| ++..|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 4899999 9999999999999999999999999999998 999999999886553 455778899 666778
Q ss_pred ccHHHHhccCCCCC-------CHHHHHHHHHHcCch----------------hhH-------------hhCCCcCCCccC
Q 001980 835 ASIFDNIAYGKEGA-------TEAEVVEAARAANVH----------------GFV-------------SALPNAYKTPVG 878 (987)
Q Consensus 835 gTIreNL~~~~~~~-------sd~ei~~al~~a~l~----------------~~i-------------~~lp~gldt~vg 878 (987)
.+|+.+|.. .|+. +.+.++.+++.+... +.+ ..+++++++.|+
T Consensus 89 ~~la~aL~~-~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~ 167 (261)
T 2eyu_A 89 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 167 (261)
T ss_dssp HHHHHHHHH-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEE
Confidence 889999875 3433 666666666554211 111 124578999999
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHHHcCCCeEEEEecCch
Q 001980 879 ERGVQLSGGQKQRIAIARAVLKNPAI--LLLDEATSALDAES---------ECVLQEALERLMRGRTTVLVAHRLS 943 (987)
Q Consensus 879 e~G~~LSgGQrQrlaLARAllr~p~I--LlLDEaTS~LD~~t---------e~~I~~~l~~~~~~~TvI~IaHRl~ 943 (987)
+++..+|+| ||+++||+++.+|+| +|+||+|+++|... +..++++++...+|+|.+.++||++
T Consensus 168 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 168 QRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 241 (261)
T ss_dssp EEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHHC
T ss_pred EEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHHh
Confidence 999999999 899999999999999 99999999999873 4578999999899999999999986
No 145
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.82 E-value=6.2e-22 Score=220.32 Aligned_cols=174 Identities=18% Similarity=0.244 Sum_probs=126.7
Q ss_pred eeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC----HHHH--hcccEEEccccc-cc-cc
Q 001980 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN----LKSL--RLKIGLVQQEPA-LF-AA 835 (987)
Q Consensus 764 ~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----l~~l--R~~i~~VpQdp~-lF-~g 835 (987)
+.+||++++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..+++++|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3477889999999999999999999999999999999999999999987653 2333 568999999987 55 56
Q ss_pred cHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCCC
Q 001980 836 SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA--ILLLDEATSA 913 (987)
Q Consensus 836 TIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~--ILlLDEaTS~ 913 (987)
|+++|+.++.....+. ..++.+++... .+..+ ..|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d~---~lldt~Gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSE---EEEECCCCSSC-------CHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHH---HHHHhcCCChh-------hhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 8999997532100000 00111111111 11112 2488 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEec---------Cchhhhc-cCEEEEEeCCEE
Q 001980 914 LDAESECVLQEALERLMRGRTTVLVAH---------RLSTIRG-VDCIGVVQDGRI 959 (987)
Q Consensus 914 LD~~te~~I~~~l~~~~~~~TvI~IaH---------Rl~ti~~-~D~Iivl~~G~i 959 (987)
+|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|..+..|+.
T Consensus 290 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9998663 22322 23789999999 3344433 478999999974
No 146
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.81 E-value=3.3e-23 Score=227.83 Aligned_cols=142 Identities=20% Similarity=0.250 Sum_probs=110.5
Q ss_pred CCccEEEEeEEEECCCCCCccceeeeeEE-----------------------EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 96 VNGNIEFKNVTFSYPSRPDVIIFRDFSIF-----------------------FPAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 96 ~~~~i~~~~~~~~y~~~~~~~~l~~i~l~-----------------------i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+..|+++||++.|. ++++++++. +++|++++|+||||||||||+++|.|++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345699999999994 366777764 8999999999999999999999999999
Q ss_pred CCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCC----CCC-CHHHHHHHHHHHhHHHHHHhCCCC
Q 001980 153 DPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK----PEA-TMAEVEAAASAANAHSFITLLPNG 227 (987)
Q Consensus 153 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~g 227 (987)
+|+.|. .+++||+|++.+++.|++||+.+.. +.. ..+.+. +.++.+..|
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~---------~~L~~l~~~ 168 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALM---------RFVTSVKSG 168 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHH---------HHHHHHHTT
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHH---------HHHHHhCCC
Confidence 998663 3699999999988889999997532 211 112222 223322223
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCh
Q 001980 228 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271 (987)
Q Consensus 228 ~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~ 271 (987)
.. ......|||||+||+++|||++.+|+|+|||||++.+|+
T Consensus 169 ~~---~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 169 SD---YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp CS---CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cc---cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 32 122357999999999999999999999999999999986
No 147
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.81 E-value=1.9e-23 Score=235.98 Aligned_cols=175 Identities=20% Similarity=0.210 Sum_probs=147.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-CceEEECCccCCCCCHHHHhcccEEEcc-----cccccc
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-AGKVMIDGKDIRRLNLKSLRLKIGLVQQ-----EPALFA 834 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~i~l~~lR~~i~~VpQ-----dp~lF~ 834 (987)
++|++++ +++|+.++|+|||||||||++++|.|+++|+ +|+|.+.|.++. + .+|..+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3678776 8999999999999999999999999999998 899988776664 2 36788999999 899999
Q ss_pred ccHHHHhccCCCCC-------CHHHHHHHHHHcCchhh-------------H----------------hhCCCcCCCccC
Q 001980 835 ASIFDNIAYGKEGA-------TEAEVVEAARAANVHGF-------------V----------------SALPNAYKTPVG 878 (987)
Q Consensus 835 gTIreNL~~~~~~~-------sd~ei~~al~~a~l~~~-------------i----------------~~lp~gldt~vg 878 (987)
++|++||.. .|+. +++.++.+++.++.... + ..+++++++.|+
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999986 4554 67778888887654211 1 124678999999
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHHcCCCeEEEEecCchh
Q 001980 879 ERGVQLSGGQKQRIAIARAVLKNPAI--LLLDEATSALDAE----S-----ECVLQEALERLMRGRTTVLVAHRLST 944 (987)
Q Consensus 879 e~G~~LSgGQrQrlaLARAllr~p~I--LlLDEaTS~LD~~----t-----e~~I~~~l~~~~~~~TvI~IaHRl~t 944 (987)
+++..+|+| ||+++||+++.+|+| +|+||+|+++|.. + +..++++++...+|+|.+.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 988889999 899999999999999 9999999999965 3 45688888888899999999999973
No 148
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.80 E-value=1e-22 Score=211.84 Aligned_cols=167 Identities=20% Similarity=0.116 Sum_probs=107.7
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcceEEEcCCCCCchh-cH
Q 001980 115 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQIGLVNQEPALFAT-TI 192 (987)
Q Consensus 115 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~v~Q~~~l~~~-tv 192 (987)
.++++| .++++|++++|+||||||||||+++|+|+++. +.+++ ++...++ ...++.++|++|++.+|+. |+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcc-cccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 347788 79999999999999999999999999999863 44443 2211111 1235679999999988765 77
Q ss_pred HHHHhcCC------C--CCCHHHHHHH----------HHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 193 LENILYGK------P--EATMAEVEAA----------ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 193 ~eni~~~~------~--~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
.+|+.... . .....+..+. ++..++.+.....| ..|| ||+
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~ 139 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFL 139 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEE
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEE
Confidence 77764210 0 0011222211 11222222222222 2344 899
Q ss_pred cCCCEEEEeCCCCCC----ChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEe
Q 001980 255 KNPKILLLDEATSAL----DAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQ 310 (987)
Q Consensus 255 ~~~~illlDEpts~L----D~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~ 310 (987)
.+|++++|||||+++ |+..++.+.+.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 140 ~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 140 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp ECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred ECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999999999998 6778889999998875 37999999999998875 89999984
No 149
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.80 E-value=5.8e-22 Score=201.70 Aligned_cols=172 Identities=15% Similarity=0.176 Sum_probs=128.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHH
Q 001980 773 GQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAE 852 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~e 852 (987)
|++++|+|+||||||||+++|.|+++ ++| |.+||.++.++. .+++++++++|+. +|+ +.|+.......+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999999 999 999999886543 5789999999996 444 344432110000
Q ss_pred HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHH
Q 001980 853 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI-AIAR---AVLKNPAILLLDE--ATSALDAESECVLQEAL 926 (987)
Q Consensus 853 i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl-aLAR---Allr~p~ILlLDE--aTS~LD~~te~~I~~~l 926 (987)
+...+.++++.+..+|+|||+++ +++| |++++|+|||||| ||...|....+.+.+.+
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 11123468888889999999998 5566 7899999999999 89889998888887777
Q ss_pred HHHcCCCeEE----EEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHH
Q 001980 927 ERLMRGRTTV----LVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 981 (987)
Q Consensus 927 ~~~~~~~TvI----~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~ 981 (987)
+. ..|+| +|+||.+ ..-+|+|..+++|+|++... ++.+..|..+++
T Consensus 133 ~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~-----~nr~~~~~~i~~ 182 (189)
T 2i3b_A 133 ST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTK-----ENRNHLLPDIVT 182 (189)
T ss_dssp HC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCS-----SSGGGHHHHHHH
T ss_pred hC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeCh-----HhHHHHHHHHHH
Confidence 63 34555 3459876 44568888889999988542 123445555543
No 150
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.80 E-value=1.6e-21 Score=216.93 Aligned_cols=174 Identities=19% Similarity=0.223 Sum_probs=126.1
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHH--hcceEEEcCCCC-Cchh-
Q 001980 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ----LRWL--RDQIGLVNQEPA-LFAT- 190 (987)
Q Consensus 119 ~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~--~~~i~~v~Q~~~-l~~~- 190 (987)
+++||++++|++++|+||||||||||++.|+|+++|++|+|.++|.|+.... ...+ +..|+|++|++. +++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4678899999999999999999999999999999999999999998875532 1222 457999999997 7654
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCC
Q 001980 191 TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK--ILLLDEATSA 268 (987)
Q Consensus 191 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~--illlDEpts~ 268 (987)
|++||+.++.....+ . ..++.. |..........+|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d---------~---~lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD---------V---VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCS---------E---EEEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCH---------H---HHHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 999999864210000 0 011111 33322233344688 999999999999999 99999 9999
Q ss_pred CChHHHHHHHHHHHhhhCCCeEEEEcCCC---------Ccccc-CCEEEEEeCCEE
Q 001980 269 LDAGSESIVQEALDRLMVGRTTVVVAHRL---------STIRN-VDTVAVIQQGQV 314 (987)
Q Consensus 269 LD~~~~~~i~~~l~~~~~~~tvi~vtH~~---------~~~~~-~d~i~~l~~G~i 314 (987)
||+..+.. .+.+ ..+.|+|++||.- +.+.. .+.|.++..|+.
T Consensus 290 lD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99986531 1211 1388999999932 22222 467888888853
No 151
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.80 E-value=4.5e-22 Score=207.03 Aligned_cols=167 Identities=17% Similarity=0.113 Sum_probs=109.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEcccccccc-ccHHH
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFD 839 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~-gTIre 839 (987)
++++| .+|++||.+||+||||||||||+++|.|+++ .|.+++.....-+....|+.++|++|++.+|. -|+++
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcC
Confidence 58898 7999999999999999999999999999985 35555422221111234678999999998775 35666
Q ss_pred HhccCC---C-----CCCHHHHHHHHHH----------cCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 840 NIAYGK---E-----GATEAEVVEAARA----------ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 840 NL~~~~---~-----~~sd~ei~~al~~----------a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
|+.... . ..+.+++.+.++. .++.++....| ..|| ||+.+
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~~ 141 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLAP 141 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEEC
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEEC
Confidence 653110 0 1223444433332 22322222222 1244 89999
Q ss_pred CCEEEEeCCCCCC----CHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEe
Q 001980 902 PAILLLDEATSAL----DAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQ 955 (987)
Q Consensus 902 p~ILlLDEaTS~L----D~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~ 955 (987)
|++++|||||+++ |+.+.+.+++.+++.. .++|+|+|+|+++.+.. ||+|++|.
T Consensus 142 p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 142 PSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp SCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 9999999999998 6778889999988874 37899999999998865 89999984
No 152
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.79 E-value=1.1e-22 Score=209.76 Aligned_cols=159 Identities=17% Similarity=0.222 Sum_probs=126.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCC-------------CCCceEEECCccCCCCCHHHHhcccEEEcccccccccc
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYD-------------PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAAS 836 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gT 836 (987)
+++|++++||||||||||||+++|.|+++ |..|+ +||+++..++.+.+|+.+ +|++++|.++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 78897 699999999999999876 8999999999
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH-HHccCCCEEEEeCCCCCCC
Q 001980 837 IFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR-AVLKNPAILLLDEATSALD 915 (987)
Q Consensus 837 IreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR-Allr~p~ILlLDEaTS~LD 915 (987)
+++|+ ++. ++++++++++.....-+ .-.++|+++.... ++ .|| +++++|++++|||+|+++|
T Consensus 76 ~~~n~-~g~---~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d 138 (198)
T 1lvg_A 76 FSGNL-YGT---SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRN 138 (198)
T ss_dssp ETTEE-EEE---EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHT
T ss_pred ecCcc-CCC---CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcC
Confidence 99998 653 68889999876432211 1134565554321 12 677 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeC
Q 001980 916 AESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 956 (987)
Q Consensus 916 ~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~ 956 (987)
.++++.|++.|.+..++ +.++| ++ ..+|+|+|+++
T Consensus 139 ~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 139 TETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 99999999999887654 45678 55 88999999885
No 153
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.78 E-value=6.7e-21 Score=212.24 Aligned_cols=194 Identities=16% Similarity=0.182 Sum_probs=144.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC-------CC
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT-------LQ 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~-------~~ 170 (987)
..++++++++.|+. ...+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++..+ ..
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 35788999999973 24589999 9999999999999999999999999999999999999998865211 12
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCCCCChHHHHHHHH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYST-QVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~~LSgGqkqRial 249 (987)
...+++.+.+++|... +. .+++..+.....+.+.... .|.+. .+-+...+||+|| ||+++
T Consensus 121 ~~~~~~~v~~~~~~~~----~~------------~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDR----PA------------LERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HHHHTTEEEEEECTTS----CH------------HHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhhceEEEEECCCC----CH------------HHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHH
Confidence 2234455777776431 11 2233333333333333322 13321 1123466899999 99999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh---CCC-----eEEEEcCCCCccccCCEEEEEeCCEEEEecChH
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM---VGR-----TTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~---~~~-----tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~ 321 (987)
| +.+|++ |++||+.....+.+.+.++. .|. ||+++||+++ -..||++++|.+|+|+.+++.+
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~ 251 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELA 251 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHH
Confidence 9 578887 99999999999999998875 266 8999999998 4458999999999999988766
Q ss_pred HH
Q 001980 322 EL 323 (987)
Q Consensus 322 ~l 323 (987)
++
T Consensus 252 ~~ 253 (347)
T 2obl_A 252 EE 253 (347)
T ss_dssp TT
T ss_pred Hc
Confidence 54
No 154
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.77 E-value=7.6e-21 Score=211.81 Aligned_cols=195 Identities=17% Similarity=0.184 Sum_probs=146.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC-------CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR-------LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~-------i~l 816 (987)
.++.+++++.|.. +..+|+++ |+|.+||++||+|+||||||||+++|.|+.+|+.|.|.++|.+.++ +..
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4788999999953 34699999 9999999999999999999999999999999999999999975321 222
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCc-cCCCCCCCChhHHHHHHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTP-VGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~-vge~G~~LSgGQrQrlaLA 895 (987)
..+++.+.+++|.+. + ..+.+..++....+.++... .|.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~----~------------~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----P------------ALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp HHHTTEEEEEECTTS----C------------HHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred hhhhceEEEEECCCC----C------------HHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 335555666666421 1 12233333333333333222 122210 012345799999 999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc---CCC-----eEEEEecCchhhhccCEEEEEeCCEEEEecChhH
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLM---RGR-----TTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~---~~~-----TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~e 967 (987)
+.+|++ |+++|+.....+.+.+++.. +|. ||++++|+++ -.-||++++|.+|+|+..|++++
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHH
Confidence 688988 99999999999999998875 266 8999999999 45589999999999999999888
Q ss_pred Hhc
Q 001980 968 LVS 970 (987)
Q Consensus 968 Ll~ 970 (987)
+..
T Consensus 253 ~~~ 255 (347)
T 2obl_A 253 ENH 255 (347)
T ss_dssp TTC
T ss_pred cCC
Confidence 754
No 155
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.77 E-value=1.7e-18 Score=193.89 Aligned_cols=76 Identities=25% Similarity=0.323 Sum_probs=68.5
Q ss_pred CCCCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEE
Q 001980 235 RGVQLSGGQKQ------RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVA 307 (987)
Q Consensus 235 ~g~~LSgGqkq------RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~ 307 (987)
....||||||| |+++||||+.+|++|||||||++||+.....+.+.|.++. .++|+|+|||+.+....||+++
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 45689999999 6788899999999999999999999999999999998875 4789999999987777799999
Q ss_pred EEe
Q 001980 308 VIQ 310 (987)
Q Consensus 308 ~l~ 310 (987)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 156
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.77 E-value=4.1e-19 Score=210.33 Aligned_cols=77 Identities=21% Similarity=0.300 Sum_probs=71.7
Q ss_pred CCCC-ChHHHHHHHHHHHhccCC--CEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCC
Q 001980 236 GVQL-SGGQKQRIAIARAMLKNP--KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQG 312 (987)
Q Consensus 236 g~~L-SgGqkqRialARal~~~~--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G 312 (987)
...| |||||||++|||||+.+| ++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+..||++++|+++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 3557 999999999999999999 9999999999999999999999999887789999999999988889999999655
No 157
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.76 E-value=1.2e-18 Score=206.31 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=71.3
Q ss_pred CCC-ChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCC
Q 001980 882 VQL-SGGQKQRIAIARAVLKNP--AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDG 957 (987)
Q Consensus 882 ~~L-SgGQrQrlaLARAllr~p--~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G 957 (987)
..| |||||||++|||||+.+| ++|||||||++||+.+...|.+.|++..+++|||+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 456 999999999999999999 9999999999999999999999999987789999999999999889999999554
No 158
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.75 E-value=6.6e-21 Score=193.88 Aligned_cols=158 Identities=15% Similarity=0.185 Sum_probs=116.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHH
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAE 207 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 207 (987)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..+++ .++++++|++|+. .++ ++|+..- ....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~--~~~~-- 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRV--GLEP-- 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEEC--CCCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcc--cccC--
Confidence 78999999999999999999999999 999 999998875543 3577899999986 222 1222110 0000
Q ss_pred HHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH-HHHH---HhccCCCEEEEeC--CCCCCChHHHHHHHHHH
Q 001980 208 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI-AIAR---AMLKNPKILLLDE--ATSALDAGSESIVQEAL 281 (987)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi-alAR---al~~~~~illlDE--pts~LD~~~~~~i~~~l 281 (987)
-+...+..+++.+..+|||||+++ ++++ |+..+|+++|||| |+..+|+...+.+.+.+
T Consensus 69 ----------------~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 69 ----------------PPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp ----------------CSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred ----------------CccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 000122368888899999999998 5566 6899999999999 89999998777777766
Q ss_pred HhhhCCCeEEE--Ec--CCCCccccCCEEEEEeCCEEEEe
Q 001980 282 DRLMVGRTTVV--VA--HRLSTIRNVDTVAVIQQGQVVET 317 (987)
Q Consensus 282 ~~~~~~~tvi~--vt--H~~~~~~~~d~i~~l~~G~i~~~ 317 (987)
.+ .+++|+ ++ |+.+ ...+|+|..+++|+|++-
T Consensus 133 ~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 133 ST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp HC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred hC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence 53 345554 34 9876 455788888888998764
No 159
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.75 E-value=4.8e-19 Score=194.85 Aligned_cols=181 Identities=15% Similarity=0.113 Sum_probs=121.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc-eEEECCccCCCCCHHHHhcccEEEccccccccccHHH
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG-KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIre 839 (987)
++|+++++.+++|+.++|+||||||||||++.|.+...|.+| .|.+.+.+ .+.+.+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999878 77655443 3556677776666655432 2233
Q ss_pred HhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH-HHHHHHHHHHccCCCEEEEeCCCC---C--
Q 001980 840 NIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ-KQRIAIARAVLKNPAILLLDEATS---A-- 913 (987)
Q Consensus 840 NL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ-rQrlaLARAllr~p~ILlLDEaTS---~-- 913 (987)
|+..+. .++++..++.+. ++...+-. +.+...++|.+| +||+. |+|+..+|++|||||||+ +
T Consensus 97 ~l~~~~--~~~~~~~~~~~~-----~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREI--IENGKFDQWFDE-----LFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHH--HHHTHHHHHHHH-----HHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCC--CCHHHHHHHHHH-----HhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 443211 122233222222 11111111 122223689999 67777 999999999999999999 4
Q ss_pred -CCH-HHHHHHHHHHHHHc--CCCeEEEEecCc--h--------------------hhh-ccCEEEEEeCCEE
Q 001980 914 -LDA-ESECVLQEALERLM--RGRTTVLVAHRL--S--------------------TIR-GVDCIGVVQDGRI 959 (987)
Q Consensus 914 -LD~-~te~~I~~~l~~~~--~~~TvI~IaHRl--~--------------------ti~-~~D~Iivl~~G~i 959 (987)
+|. .....+.+.|+++. .++|||+++|.. + .+. .||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 55567778887764 289999999995 4 444 5899999999875
No 160
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.75 E-value=9.8e-20 Score=195.25 Aligned_cols=131 Identities=16% Similarity=0.203 Sum_probs=100.2
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILEN 195 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 195 (987)
+|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++ .|++|++.-+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i------------~~~~~~~~~~------- 74 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI------------EYVFKHKKSI------- 74 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC------------CSCCCCSSSE-------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc------------eeecCCccee-------
Confidence 899999 8999999999999999999999999999998 99999998654 3444433110
Q ss_pred HhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHH
Q 001980 196 ILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275 (987)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~ 275 (987)
. +. .+.|++ ...| |++|||||..+|+++++|||| |+++..
T Consensus 75 --v--~q---------------------~~~gl~------~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~ 114 (261)
T 2eyu_A 75 --V--NQ---------------------REVGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE 114 (261)
T ss_dssp --E--EE---------------------EEBTTT------BSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred --e--eH---------------------HHhCCC------HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence 0 00 001221 1122 899999999999999999999 998765
Q ss_pred HHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeC
Q 001980 276 IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ 311 (987)
Q Consensus 276 ~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~ 311 (987)
.+.+ ....|.++++++|+.+....+||+++|..
T Consensus 115 ~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 115 TALR---AAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHHH---HHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 4443 33458999999999886666899888754
No 161
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.74 E-value=1.3e-17 Score=186.63 Aligned_cols=78 Identities=28% Similarity=0.387 Sum_probs=69.1
Q ss_pred CCCCChhHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEE
Q 001980 881 GVQLSGGQKQ------RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGV 953 (987)
Q Consensus 881 G~~LSgGQrQ------rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iiv 953 (987)
...||||||| |+++|||++.+|++|||||||++||+.+...+.+.|++.. .++|+|+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3569999999 6788899999999999999999999999999999998864 46899999999887777999999
Q ss_pred Ee--CCE
Q 001980 954 VQ--DGR 958 (987)
Q Consensus 954 l~--~G~ 958 (987)
|+ +|.
T Consensus 326 l~~~~g~ 332 (339)
T 3qkt_A 326 ISLENGS 332 (339)
T ss_dssp EEEETTE
T ss_pred EEecCCc
Confidence 85 454
No 162
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.74 E-value=6.2e-19 Score=193.97 Aligned_cols=181 Identities=16% Similarity=0.146 Sum_probs=119.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHH
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILE 194 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 194 (987)
++|+++++.+++|++++|+||||||||||++.|+|.+.|++| .|.+.+.+ .+...+++++.++.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 379999999999999999999999999999999999999888 67554432 2444555555555554322 2223
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH-HHHHHHHHHhccCCCEEEEeCCCC---C--
Q 001980 195 NILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ-KQRIAIARAMLKNPKILLLDEATS---A-- 268 (987)
Q Consensus 195 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq-kqRialARal~~~~~illlDEpts---~-- 268 (987)
++..+.. +.++..+.. .+.+...+ + .+.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~~~--~~~~~~~~~-----~~~l~~~~--l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREII--ENGKFDQWF-----DELFGNDT--F--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHHH--HHTHHHHHH-----HHHHSSSC--E--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCCC--CHHHHHHHH-----HHHhccCC--E--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 3332210 011111111 11222221 1 1333345789999 67777 999999999999999999 4
Q ss_pred -CCh-HHHHHHHHHHHhhh--CCCeEEEEcCCC--C--------------------ccc-cCCEEEEEeCCEE
Q 001980 269 -LDA-GSESIVQEALDRLM--VGRTTVVVAHRL--S--------------------TIR-NVDTVAVIQQGQV 314 (987)
Q Consensus 269 -LD~-~~~~~i~~~l~~~~--~~~tvi~vtH~~--~--------------------~~~-~~d~i~~l~~G~i 314 (987)
+|. .....+.+.|+++. .+.|||++||+. + .+. .||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455 55677888888774 289999999995 4 454 4899999998864
No 163
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.74 E-value=1e-18 Score=218.96 Aligned_cols=170 Identities=20% Similarity=0.173 Sum_probs=121.4
Q ss_pred ccEEEEe-----EEEECCCCCCccceeeeeEEEeC-------CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 98 GNIEFKN-----VTFSYPSRPDVIIFRDFSIFFPA-------GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 98 ~~i~~~~-----~~~~y~~~~~~~~l~~i~l~i~~-------G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
..|+++| +++.|++ +..+++|++|++++ |++++|+||||||||||+|.+ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4599999 9999943 23589999999987 999999999999999999999 98763
Q ss_pred CCCCCHHHHhcceE-EEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 166 IKTLQLRWLRDQIG-LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 166 ~~~~~~~~~~~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
..++| ||||++. ..|+.|||... .++.+.+ ..+..++|++++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r---------------ig~~d~~-----------~~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR---------------LGASDRI-----------MSGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE---------------CC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH---------------cCCHHHH-----------hhchhhhHHHHH
Confidence 23566 9999873 44677776421 0111111 112245777776
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHH-HHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEE--Eec
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGS-ESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVV--ETG 318 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~-~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~--~~g 318 (987)
+ +++|++++.+|+++|||||++|+|+.. ...++..++.+. + |.|+|++||+++.+.. +|++.++ +|++. +.|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 999999999999999999999999986 455677777774 3 8999999999998876 7988776 58876 445
Q ss_pred Ch
Q 001980 319 TH 320 (987)
Q Consensus 319 ~~ 320 (987)
+.
T Consensus 936 ~~ 937 (1022)
T 2o8b_B 936 EC 937 (1022)
T ss_dssp --
T ss_pred Cc
Confidence 43
No 164
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.74 E-value=3.9e-18 Score=202.34 Aligned_cols=152 Identities=18% Similarity=0.138 Sum_probs=119.2
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHh-cCC
Q 001980 122 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENIL-YGK 200 (987)
Q Consensus 122 ~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~-~~~ 200 (987)
+..+++|++++|+|+||||||||++.++|...|. |+ +.+.|++|++ ...+.++.. ++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~---~~~l~~~~~~~g~ 333 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEES---RAQLLRNAYSWGM 333 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSC---HHHHHHHHHTTSC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCC---HHHHHHHHHHcCC
Confidence 3478999999999999999999999999998874 43 1256677876 335666543 221
Q ss_pred CCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChH-----HHH
Q 001980 201 PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-----SES 275 (987)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~-----~~~ 275 (987)
+.+ +.. . .|...........|||||+||+++||++..+|+++|+| ||++||.. .++
T Consensus 334 ---~~~------------~~~-~--~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 334 ---DFE------------EME-R--QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp ---CHH------------HHH-H--TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred ---CHH------------HHH-h--CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 111 111 1 14444556667789999999999999999999999999 99999999 888
Q ss_pred HHHHHHHhhh-CCCeEEEEcCCC----------Ccccc-CCEEEEEeCCE
Q 001980 276 IVQEALDRLM-VGRTTVVVAHRL----------STIRN-VDTVAVIQQGQ 313 (987)
Q Consensus 276 ~i~~~l~~~~-~~~tvi~vtH~~----------~~~~~-~d~i~~l~~G~ 313 (987)
.+.+.++.++ .|.|+|++||+. ..+.. ||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8888887775 589999999998 66665 79999999886
No 165
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.74 E-value=1.6e-20 Score=187.46 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=86.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCCC---HHHHh-cceE----EEcCCCCCchhcHHHHHh
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFYDPN---AGHVLLDNVDIKTLQ---LRWLR-DQIG----LVNQEPALFATTILENIL 197 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~---~~~~~-~~i~----~v~Q~~~l~~~tv~eni~ 197 (987)
++++|+|+||||||||+++|+|+++|+ .|+|.++|.++.+++ .+.+| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999998 899999999987775 55666 4688 899999877 111
Q ss_pred cCCCCCCHHHHHHHHHHHhHHHHHHh-CCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001980 198 YGKPEATMAEVEAAASAANAHSFITL-LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKIL 260 (987)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~il 260 (987)
+ . ++. .+++++++.. +| |++|.++|+ |||||||||+||||++++|++.
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 111 5678889998 99 999999995 9999999999999999999873
No 166
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.73 E-value=4.2e-18 Score=213.51 Aligned_cols=172 Identities=13% Similarity=0.146 Sum_probs=123.3
Q ss_pred ccEEEEe-----EEEECCCCCCccceeeeeEEEeC-------CcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc
Q 001980 743 GEIELRH-----VDFAYPSRPDVVVFKDFNLRIRA-------GQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD 810 (987)
Q Consensus 743 g~I~f~~-----vsf~Y~~~~~~~vL~~vsl~I~~-------Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~d 810 (987)
+.|+++| |++.|++ +..|++|++|++++ |+.++|+|||||||||+++++ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 9999943 23699999999988 999999999999999999999 99863
Q ss_pred CCCCCHHHHhcccE-EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 811 IRRLNLKSLRLKIG-LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 811 i~~i~l~~lR~~i~-~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
+.++| +|||++. .-|+.+||. .. .++.+.+. .+-..+|++++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~-~r--------------ig~~d~~~-----------~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVF-TR--------------LGASDRIM-----------SGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEE-EE--------------CC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHH-HH--------------cCCHHHHh-----------hchhhhHHHHH
Confidence 34566 9999984 557777773 11 12222111 11235788777
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHc-C-CCeEEEEecCchhhhc-cCEEEEEeCCEEE--Eec
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAES-ECVLQEALERLM-R-GRTTVLVAHRLSTIRG-VDCIGVVQDGRIV--EQG 963 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~t-e~~I~~~l~~~~-~-~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv--e~G 963 (987)
+ +++||+++.+|++|||||||+++|+.. ...++..|+.+. + ++|+|++||+++.+.. +|++.|+ +|++. +.|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 999999999999999999999999987 466777787764 3 8999999999998865 7998887 58887 556
Q ss_pred ChhH
Q 001980 964 SHSE 967 (987)
Q Consensus 964 t~~e 967 (987)
++++
T Consensus 936 ~~~~ 939 (1022)
T 2o8b_B 936 ECED 939 (1022)
T ss_dssp ----
T ss_pred Cccc
Confidence 5543
No 167
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.73 E-value=4.4e-20 Score=209.11 Aligned_cols=148 Identities=17% Similarity=0.302 Sum_probs=98.7
Q ss_pred ceeeeeEEEeC--CcEEEEEcCCCCChHHHHHHHhccCCCCC----ceEEE----CCccCCCCCHHHHhcccEEEccccc
Q 001980 762 VFKDFNLRIRA--GQSQALVGASGSGKSSVIALIERFYDPTA----GKVMI----DGKDIRRLNLKSLRLKIGLVQQEPA 831 (987)
Q Consensus 762 vL~~vsl~I~~--Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~----G~I~i----dG~di~~i~l~~lR~~i~~VpQdp~ 831 (987)
+.+.|+++|++ |++++|+|+||||||||+++|.|+++|++ |+|.+ +|.++ .++..++ .+|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 99987 46666 5566666 56999999999
Q ss_pred cccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCc--CCC--------ccCCCCCCCChhHHHHHHHHHHH---
Q 001980 832 LFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA--YKT--------PVGERGVQLSGGQKQRIAIARAV--- 898 (987)
Q Consensus 832 lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~g--ldt--------~vge~G~~LSgGQrQrlaLARAl--- 898 (987)
+|.+|+++||.++..+..+...+..+.......++..++.+ ++. |..++|.++|+||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999998765544444444444333334444433322 221 22244555666666666666666
Q ss_pred cc--CCCEEEEeCCC
Q 001980 899 LK--NPAILLLDEAT 911 (987)
Q Consensus 899 lr--~p~ILlLDEaT 911 (987)
++ +++|+++||||
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 44 56666666664
No 168
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.71 E-value=2e-19 Score=192.15 Aligned_cols=167 Identities=12% Similarity=0.109 Sum_probs=107.3
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHH
Q 001980 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF 838 (987)
Q Consensus 759 ~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIr 838 (987)
+.++|+|+||++++|+.+||+|+||||||||+++|.+++ |.+.+| ..++.+++++||++...-|++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 446999999999999999999999999999999999976 666555 367889999999754456898
Q ss_pred HHhccCCC-------C-CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 001980 839 DNIAYGKE-------G-ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910 (987)
Q Consensus 839 eNL~~~~~-------~-~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEa 910 (987)
+|+.+... + ...+++.+.++. +..+.+..+ ..||+||+||+++ ++++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 88754221 1 122333333332 223344444 3699999999988 688999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh-hcc-CEEEEEeCCEEEEecChhHHhc
Q 001980 911 TSALDAESECVLQEALERLMRGRTTVLVAHRLSTI-RGV-DCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 911 TS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti-~~~-D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
....|.. +.+. .+.|++++||....+ +.+ +.+ ++|+ +++++++
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 8877754 2222 378999999974433 333 323 6675 5666653
No 169
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.71 E-value=3.9e-20 Score=192.95 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=111.1
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccc---cHHHHhccCC-
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA---SIFDNIAYGK- 845 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~g---TIreNL~~~~- 845 (987)
.++|+++||+|+||||||||+++|.|++.| ++++|+||+++++. |+++|+.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 58999999998854 5777654332
Q ss_pred -C-CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH----HHHHHHHHHHccCCCEEEEeCCCCC------
Q 001980 846 -E-GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ----KQRIAIARAVLKNPAILLLDEATSA------ 913 (987)
Q Consensus 846 -~-~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ----rQrlaLARAllr~p~ILlLDEaTS~------ 913 (987)
+ ....+.+.++++..++.+.+.. | . ..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~---------~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-V---------YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-C---------EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-c---------ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 2 2345677788877766555432 2 2 3466664 5799999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHHc--CCCeEEEEecCc
Q 001980 914 -LDAESECVLQEALERLM--RGRTTVLVAHRL 942 (987)
Q Consensus 914 -LD~~te~~I~~~l~~~~--~~~TvI~IaHRl 942 (987)
||+.++..+++.+.+.. +|+|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999998753 589999999985
No 170
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.71 E-value=1.7e-17 Score=161.27 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=71.8
Q ss_pred cCCCCCCChHHHHHHHHH------HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCE
Q 001980 233 GERGVQLSGGQKQRIAIA------RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDT 305 (987)
Q Consensus 233 ~~~g~~LSgGqkqRialA------Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~ 305 (987)
...+.+||||||||++|| |||+.+|+++||||||++||+.+++.+.+.+.++. .|+|+|++||+++....||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 345678999999999876 99999999999999999999999999999999875 48999999999966666999
Q ss_pred EEEE--eCCE
Q 001980 306 VAVI--QQGQ 313 (987)
Q Consensus 306 i~~l--~~G~ 313 (987)
+++| ++|.
T Consensus 132 ii~l~~~~g~ 141 (148)
T 1f2t_B 132 VIRISLENGS 141 (148)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEcCCCe
Confidence 9999 4564
No 171
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.71 E-value=8.7e-19 Score=196.21 Aligned_cols=166 Identities=17% Similarity=0.193 Sum_probs=121.2
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCCChHHHHHHHhccC--CCCC----ce-EEECCccCCCCCHHHHhcccEEEccccccc
Q 001980 762 VFKDF-NLRIRAGQSQALVGASGSGKSSVIALIERFY--DPTA----GK-VMIDGKDIRRLNLKSLRLKIGLVQQEPALF 833 (987)
Q Consensus 762 vL~~v-sl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~--~p~~----G~-I~idG~di~~i~l~~lR~~i~~VpQdp~lF 833 (987)
.|+.+ ++.|++|+.++|+|++|||||||++.|.+.+ +|++ |+ |+||+.+.- .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 56665 6899999999999999999999999999998 6665 67 999998752 257788999999988
Q ss_pred cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc-------cCCCEEE
Q 001980 834 AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL-------KNPAILL 906 (987)
Q Consensus 834 ~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll-------r~p~ILl 906 (987)
..++.+|+.+... .+ |.+|+|++.++++++ .+|++||
T Consensus 193 ~~~v~~ni~~~~~-~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 193 PDEVLKHIYVARA-FN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HHHHGGGEEEEEC-CS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HHHHhhCEEEEec-CC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 8899999876432 11 456788888888888 6899999
Q ss_pred EeCCCCCCCHHH-------H-----HHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 907 LDEATSALDAES-------E-----CVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 907 LDEaTS~LD~~t-------e-----~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+||||+.+|++. + ..+.+.|.+.. .++|||+++|....... ++.+.+...|++++++.+..|.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 999999999863 1 33444444433 38999999998875542 3456778889998888877664
No 172
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.69 E-value=4.1e-17 Score=158.49 Aligned_cols=80 Identities=26% Similarity=0.349 Sum_probs=71.1
Q ss_pred CCCCCChhHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEE
Q 001980 880 RGVQLSGGQKQRIAIA------RAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIG 952 (987)
Q Consensus 880 ~G~~LSgGQrQrlaLA------RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Ii 952 (987)
...+||||||||++|| |||+++|++|||||||++||+++...+.+.|++.. +++|+|+|||+++....||+|+
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii 133 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 133 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEE
Confidence 4568999999999876 99999999999999999999999999999999875 4789999999997666789999
Q ss_pred EE--eCCEE
Q 001980 953 VV--QDGRI 959 (987)
Q Consensus 953 vl--~~G~i 959 (987)
+| ++|..
T Consensus 134 ~l~~~~g~s 142 (148)
T 1f2t_B 134 RISLENGSS 142 (148)
T ss_dssp EEEEETTEE
T ss_pred EEEcCCCeE
Confidence 99 56643
No 173
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.69 E-value=5.1e-17 Score=188.10 Aligned_cols=73 Identities=22% Similarity=0.288 Sum_probs=67.2
Q ss_pred CCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC-CCeEEEEcCCCCccccCCEEEEEe
Q 001980 238 QLSGGQKQRIAIARAML----KNPKILLLDEATSALDAGSESIVQEALDRLMV-GRTTVVVAHRLSTIRNVDTVAVIQ 310 (987)
Q Consensus 238 ~LSgGqkqRialARal~----~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~~d~i~~l~ 310 (987)
.||||||||++||++|+ .+|+++||||||++||+.....+.+.|.++.. +.++|++||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999988753 789999999988778899999885
No 174
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.69 E-value=5.2e-18 Score=179.18 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=101.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-------CccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHH
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-------NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENI 196 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-------~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni 196 (987)
-+++|++++|+||||||||||+++|+|.+.| ..|.+++++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 5899999999999999999999999996655 445788887542 11 2357788888888878999998
Q ss_pred hcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCCCCCCChH--
Q 001980 197 LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM--LKNPKILLLDEATSALDAG-- 272 (987)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal--~~~~~illlDEpts~LD~~-- 272 (987)
.+.......+.. .... .+.+.+. +++ ..+|+++++|||++.+|+.
T Consensus 95 ~~~~~~~~~~~~-~~~~--~~~~~~~----------------------------~~~~~~~~~~llilDe~~~~l~~~~~ 143 (231)
T 4a74_A 95 YVARAFNSNHQM-LLVQ--QAEDKIK----------------------------ELLNTDRPVKLLIVDSLTSHFRSEYI 143 (231)
T ss_dssp EEEECCSHHHHH-HHHH--HHHHHHH----------------------------HHTTSSSCEEEEEEETSSHHHHHHSC
T ss_pred EEEecCChHHHH-HHHH--HHHHHHH----------------------------HhcccCCceeEEEECChHHHhccccC
Confidence 875432211111 1000 0111111 111 3589999999999999984
Q ss_pred -----H-----HHHHHHHHHhhh--CCCeEEEEcCCCC----cccc-CCEEEEEeCC
Q 001980 273 -----S-----ESIVQEALDRLM--VGRTTVVVAHRLS----TIRN-VDTVAVIQQG 312 (987)
Q Consensus 273 -----~-----~~~i~~~l~~~~--~~~tvi~vtH~~~----~~~~-~d~i~~l~~G 312 (987)
. ...+.+.|.++. .|.|||++||... .+.. +|++++|++|
T Consensus 144 ~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 144 GRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 1 125666666553 3899999999544 4665 7999999875
No 175
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.69 E-value=6e-17 Score=200.40 Aligned_cols=167 Identities=14% Similarity=0.112 Sum_probs=119.0
Q ss_pred ccEEEEeEEEECCCC--CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHH--------HcCCCCCccEEEECCEeCC
Q 001980 98 GNIEFKNVTFSYPSR--PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLI--------ERFYDPNAGHVLLDNVDIK 167 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~--~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l--------~g~~~~~~G~i~~~g~~~~ 167 (987)
..+.+++...-+-.. ....+++|++|++++|++++|+||||||||||+|++ .|.+.|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 358888766544221 134688999999999999999999999999999999 66665554321
Q ss_pred CCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 168 TLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 168 ~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
++++. .+|. .+|. .+.+ ...+|+|++++.
T Consensus 702 ----------~~~~d---~i~~-------~ig~-----------------~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVGA-----------------GDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcCc-----------------hhhH--------------HHhHhhhHHHHH
Confidence 11110 0010 0110 0111 125788888888
Q ss_pred HHHHHh--ccCCCEEEEeCCCCCCChHHHHHH-HHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHH
Q 001980 248 AIARAM--LKNPKILLLDEATSALDAGSESIV-QEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEE 322 (987)
Q Consensus 248 alARal--~~~~~illlDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 322 (987)
.+|+++ +.+|+++||||||+|+|+.....+ +..++.+. .|.|+|++||+.+....+|++..+++|++...++.++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 999999999999999999877666 55555554 3899999999988888899999999999988776554
Q ss_pred H
Q 001980 323 L 323 (987)
Q Consensus 323 l 323 (987)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 3
No 176
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.68 E-value=1.9e-16 Score=183.35 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=67.9
Q ss_pred CCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhccCEEEEEe
Q 001980 883 QLSGGQKQRIAIARAVL----KNPAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVAHRLSTIRGVDCIGVVQ 955 (987)
Q Consensus 883 ~LSgGQrQrlaLARAll----r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~~TvI~IaHRl~ti~~~D~Iivl~ 955 (987)
.||||||||++|||+|+ ++|+++||||||++||+.....+.+.|++..+ +.++|+|||+...+..||++++|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999998753 689999999998888899999985
No 177
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.68 E-value=5.9e-18 Score=205.94 Aligned_cols=147 Identities=18% Similarity=0.183 Sum_probs=112.0
Q ss_pred CccEEEEeEEEECCCC--CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECCEeCCCCCHHH
Q 001980 97 NGNIEFKNVTFSYPSR--PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-PNAGHVLLDNVDIKTLQLRW 173 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~--~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~ 173 (987)
.+.+++++.. +|-- .+..+++|+||+ |++++|+||||||||||+|+|+|+.. ++.|.+.-.
T Consensus 548 ~~~i~i~~~r--HP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa----------- 611 (765)
T 1ewq_A 548 GDRLQIRAGR--HPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA----------- 611 (765)
T ss_dssp SSSEEEEEEC--CTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-----------
T ss_pred CCcEEEEEeE--CceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh-----------
Confidence 3458888873 4421 134689999998 99999999999999999999999874 677865310
Q ss_pred HhcceEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 174 LRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 174 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
.+..+++++| +|.. ++.||+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 1346888877 4543 66665432 268999999999999
Q ss_pred h--ccCCCEEEEeCC---CCCCChHHH-HHHHHHHHhhhCCCeEEEEcCCCCccccC
Q 001980 253 M--LKNPKILLLDEA---TSALDAGSE-SIVQEALDRLMVGRTTVVVAHRLSTIRNV 303 (987)
Q Consensus 253 l--~~~~~illlDEp---ts~LD~~~~-~~i~~~l~~~~~~~tvi~vtH~~~~~~~~ 303 (987)
+ +.+|+++||||| |++||+.+. ..+.+.+.+ .|.|+|++||+.+....+
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 9 999999999999 999999875 568888876 489999999998776554
No 178
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.68 E-value=2.3e-18 Score=184.34 Aligned_cols=180 Identities=17% Similarity=0.122 Sum_probs=113.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh--ccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE--RFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~--rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
+++++++..|+.- + .+|.+ .|++|+.++|+||||||||||+++|. ++.++.+|.+.+++.+... .....+++
T Consensus 7 ~~~~~i~tg~~~l-D-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGF-D-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTT-G-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhH-H-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 5566676666421 1 13333 79999999999999999999999999 7756778888888754321 22334567
Q ss_pred cEEEcccccccc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 823 IGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 823 i~~VpQdp~lF~-gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
+++++|++..+. -++.++....... ...+... .. ...+.++.+....+..-..+
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------------~~----~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGL-PSEEKFV--------------------LE----DRFNVDNFLRYIYRVVKAIN 135 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC--------------------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred cCCChHHHhhcCCEEEEEcccccccc-cccccee--------------------cc----CcccHHHHHHHHHHHHHhhC
Confidence 889988865432 2333333211000 0000000 00 01234454444444444579
Q ss_pred CCEEEEeCCCCCCC-----HHHHHHHHHHHHHHc-CCCeEEEEecCchhh----------hcc-CEEEEEe
Q 001980 902 PAILLLDEATSALD-----AESECVLQEALERLM-RGRTTVLVAHRLSTI----------RGV-DCIGVVQ 955 (987)
Q Consensus 902 p~ILlLDEaTS~LD-----~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti----------~~~-D~Iivl~ 955 (987)
|++|+|||||+.+| ....+.+.+.++... .|+|||+++|.++.+ ..| |+|++|+
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 99999999999998 666676888877654 489999999999886 457 9999995
No 179
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.67 E-value=1e-19 Score=205.50 Aligned_cols=174 Identities=20% Similarity=0.270 Sum_probs=136.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEeCCCCCHHHHhcceEEEcC-----CCCCchh
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-AGHVLLDNVDIKTLQLRWLRDQIGLVNQ-----EPALFAT 190 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~Q-----~~~l~~~ 190 (987)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++. + .++..++|++| ++..|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHHH
Confidence 466655 7899999999999999999999999999998 899987765553 2 24668999999 8889999
Q ss_pred cHHHHHhcCCCCC-------CHHHHHHHHHHHhH-----------------HHHHH------------hCCCCCcccccC
Q 001980 191 TILENILYGKPEA-------TMAEVEAAASAANA-----------------HSFIT------------LLPNGYSTQVGE 234 (987)
Q Consensus 191 tv~eni~~~~~~~-------~~~~~~~~~~~~~~-----------------~~~~~------------~~~~g~~t~~~~ 234 (987)
++++|+... |+. +.+.+..+++.++. ...+. .++.++++.+++
T Consensus 201 ~l~~~L~~~-pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 201 ALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHTTSC-CSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHhhhC-cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 999999974 433 45555555554321 11111 235578889999
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCE--EEEeCCCCCCChH----H-----HHHHHHHHHhhhCCCeEEEEcCCCCc
Q 001980 235 RGVQLSGGQKQRIAIARAMLKNPKI--LLLDEATSALDAG----S-----ESIVQEALDRLMVGRTTVVVAHRLST 299 (987)
Q Consensus 235 ~g~~LSgGqkqRialARal~~~~~i--lllDEpts~LD~~----~-----~~~i~~~l~~~~~~~tvi~vtH~~~~ 299 (987)
++..+||| ||+++||+++.+|++ +|+||+|++||.. + +....+.+..+.+|+|.+.+.||+..
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 88899999 899999999999999 9999999999965 2 23466667777789999999999874
No 180
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.67 E-value=1.4e-18 Score=185.60 Aligned_cols=166 Identities=14% Similarity=0.150 Sum_probs=102.7
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCch-hcH
Q 001980 114 DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTI 192 (987)
Q Consensus 114 ~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv 192 (987)
..++|+|+||++++|++++|+||||||||||+++|+|++ |.+.++ ..++.++|++|++ ++. -|+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCc-CccccCH
Confidence 345899999999999999999999999999999999976 554443 2467899999996 443 489
Q ss_pred HHHHhcCCCC--------CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 001980 193 LENILYGKPE--------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 264 (987)
Q Consensus 193 ~eni~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDE 264 (987)
.+|+.+.... ...+.+.+. ++.+..+.+. ....||+||+||+++ +++..+|+++||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------L~~l~~~~~~----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg 141 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHPDAFDNDLMHRT---------LKNIVEGKTV----EVPTYDFVTHSRLPE-TTVVYPADVVLFEG 141 (245)
T ss_dssp HHHHHHHTTCCCTTSGGGBCHHHHHHH---------HHHHHTTCCE----EECCEETTTTEECSS-CEEECCCSEEEEEC
T ss_pred hHhhhhhccCCCCCCcccccHHHHHHH---------HHHHHCCCCe----ecccccccccCccCc-eEEecCCCEEEEeC
Confidence 9988653211 111112211 2211122222 335799999999988 68899999999999
Q ss_pred CCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcc-ccC-CEEEEEeCCEEEEecChHHHHH
Q 001980 265 ATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI-RNV-DTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 265 pts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~-~~~-d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|....|.. +.++ .+.|++++||+...+ +.+ +++ ++|+ +.+++.+
T Consensus 142 ~~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 142 ILVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred ccccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 98877764 2222 378999999974333 333 333 5564 5666543
No 181
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.67 E-value=2.6e-19 Score=201.57 Aligned_cols=148 Identities=11% Similarity=0.080 Sum_probs=117.0
Q ss_pred EEEeEEEE---CCCCCCccce---------eeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC
Q 001980 746 ELRHVDFA---YPSRPDVVVF---------KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR 813 (987)
Q Consensus 746 ~f~~vsf~---Y~~~~~~~vL---------~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 813 (987)
+|+||+|+ |++. +.++| +++||.|++|+.++|+|+||||||||+++|.|+++|++|.|+|+|. .+
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PE 213 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cc
Confidence 89999999 8532 23466 9999999999999999999999999999999999999999999985 46
Q ss_pred CCHHHHhcccEEEc-ccccc---ccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 814 LNLKSLRLKIGLVQ-QEPAL---FAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 814 i~l~~lR~~i~~Vp-Qdp~l---F~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
+.+..+|+.+++++ |++.+ +..|+++||..+....+|..+...++.+.+.+++..+|.|++|.+++-+.+-..+..
T Consensus 214 ~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~ 293 (361)
T 2gza_A 214 LFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTF 293 (361)
T ss_dssp CCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHH
T ss_pred cCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 66666789999999 99886 888999999876554444444444445566778888899999999988888888999
Q ss_pred HHHHHHH
Q 001980 890 QRIAIAR 896 (987)
Q Consensus 890 QrlaLAR 896 (987)
+|+....
T Consensus 294 ~Rl~~l~ 300 (361)
T 2gza_A 294 ERLALMV 300 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998775
No 182
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.67 E-value=1.9e-17 Score=201.48 Aligned_cols=147 Identities=19% Similarity=0.204 Sum_probs=114.2
Q ss_pred cccEEEEeEEEECCCC--CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-CCCceEEECCccCCCCCHHH
Q 001980 742 RGEIELRHVDFAYPSR--PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-PTAGKVMIDGKDIRRLNLKS 818 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~--~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-p~~G~I~idG~di~~i~l~~ 818 (987)
.+.|++++. +||-- .+..|++|+||+ |+.++|+|||||||||+++++.++.. ++.|.+.- .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------h
Confidence 457999987 56531 134689999999 99999999999999999999999874 67776521 1
Q ss_pred HhcccEEEcccccccc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 819 LRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 819 lR~~i~~VpQdp~lF~-gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
.+.++++++| +|. -++.+|+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 2467888887 454 366666531 268999999999999
Q ss_pred H--ccCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHcCCCeEEEEecCchhhhcc
Q 001980 898 V--LKNPAILLLDEA---TSALDAESE-CVLQEALERLMRGRTTVLVAHRLSTIRGV 948 (987)
Q Consensus 898 l--lr~p~ILlLDEa---TS~LD~~te-~~I~~~l~~~~~~~TvI~IaHRl~ti~~~ 948 (987)
+ +.+|+++||||| |+++|..+. ..+.+.|.+ .++|+|++||+.+....+
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 9 999999999999 999999886 478888877 589999999998876544
No 183
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.67 E-value=8.6e-17 Score=199.06 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=118.0
Q ss_pred ccEEEEeEEEECCCC--CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHH--------hccCCCCCceEEECCccCC
Q 001980 743 GEIELRHVDFAYPSR--PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALI--------ERFYDPTAGKVMIDGKDIR 812 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~--~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL--------~rl~~p~~G~I~idG~di~ 812 (987)
+.|++++..--+-.. ....|++|++|++++|+.++|+|||||||||+++++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 468888764333211 123689999999999999999999999999999998 44443332211
Q ss_pred CCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 813 RLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 813 ~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
++++ ..+|. ..++.+.+ ...+|+|++++.
T Consensus 702 ----------~~~~---d~i~~------------------------~ig~~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIV---DCILA------------------------RVGAGDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECC---SEEEE------------------------ECC-----------------------CHHHHHHH
T ss_pred ----------chHH---HHHHH------------------------hcCchhhH--------------HHhHhhhHHHHH
Confidence 0000 00110 01111111 124788888888
Q ss_pred HHHHHH--ccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhH
Q 001980 893 AIARAV--LKNPAILLLDEATSALDAESECVL-QEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 893 aLARAl--lr~p~ILlLDEaTS~LD~~te~~I-~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~e 967 (987)
.+|+++ +.+|++|||||||+++|+.....+ +..++... .++|+|++||..+....+|++..+.+|++...+++++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 999999999999999999887777 55555543 3899999999998888899999999999998887776
Q ss_pred H
Q 001980 968 L 968 (987)
Q Consensus 968 L 968 (987)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 5
No 184
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.67 E-value=3.5e-17 Score=172.81 Aligned_cols=148 Identities=17% Similarity=0.195 Sum_probs=104.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCC-------CCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHh
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDP-------TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI 841 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-------~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL 841 (987)
-|++||.++|+||||||||||+++|.+.+.+ ..|.|++++.+.. . ++++++++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997665 4558889887531 1 2457777888877777899998
Q ss_pred ccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc-------CCCEEEEeCCCCCC
Q 001980 842 AYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK-------NPAILLLDEATSAL 914 (987)
Q Consensus 842 ~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr-------~p~ILlLDEaTS~L 914 (987)
.+.... +. ..|++++..+++++. +|++|+|||||+.+
T Consensus 95 ~~~~~~-~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 YVARAF-NS-----------------------------------NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp EEEECC-SH-----------------------------------HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred EEEecC-Ch-----------------------------------HHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 754321 11 123333444444444 89999999999999
Q ss_pred CHH-------HH-----HHHHHHHHHHc--CCCeEEEEecCc----hhhhc-cCEEEEEeCCE
Q 001980 915 DAE-------SE-----CVLQEALERLM--RGRTTVLVAHRL----STIRG-VDCIGVVQDGR 958 (987)
Q Consensus 915 D~~-------te-----~~I~~~l~~~~--~~~TvI~IaHRl----~ti~~-~D~Iivl~~G~ 958 (987)
|++ .+ ..+.+.|.+.. .++|||+|+|.. ..+.. +|++++|++|+
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 984 22 24555555543 389999999944 44655 79999998753
No 185
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.66 E-value=2.4e-17 Score=180.34 Aligned_cols=163 Identities=28% Similarity=0.302 Sum_probs=111.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC----HHHH--hcccEEEcccccccc-ccHHHHhccC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN----LKSL--RLKIGLVQQEPALFA-ASIFDNIAYG 844 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----l~~l--R~~i~~VpQdp~lF~-gTIreNL~~~ 844 (987)
+|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..+++|+|++.++. .|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999997654 2333 467999999998765 4788888532
Q ss_pred CCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHH
Q 001980 845 KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA--ILLLDEATSALDAESECVL 922 (987)
Q Consensus 845 ~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~--ILlLDEaTS~LD~~te~~I 922 (987)
. ..+.+..+-..++..+.. ...++..++||.+||||+..+|+ +|+|| |+++.| +
T Consensus 181 ~-------------~~~~d~~llDt~G~~~~~----~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~ 236 (304)
T 1rj9_A 181 K-------------ARGYDLLFVDTAGRLHTK----HNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------G 236 (304)
T ss_dssp H-------------HHTCSEEEECCCCCCTTC----HHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------H
T ss_pred H-------------hCCCCEEEecCCCCCCch----HHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------H
Confidence 1 111111111122222211 12256677999999999999999 55666 444443 3
Q ss_pred HHHHHHHc--CCCeEEEEecCchhhhcc----------CEEEEEeCCE
Q 001980 923 QEALERLM--RGRTTVLVAHRLSTIRGV----------DCIGVVQDGR 958 (987)
Q Consensus 923 ~~~l~~~~--~~~TvI~IaHRl~ti~~~----------D~Iivl~~G~ 958 (987)
.+.+++.. .+.|+|++||...+...- -.|..+..|+
T Consensus 237 ~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 237 LEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp HHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 33333332 278999999976543221 3566666665
No 186
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.66 E-value=1.2e-17 Score=186.38 Aligned_cols=146 Identities=21% Similarity=0.220 Sum_probs=107.4
Q ss_pred EeEEEECCCCCCccceeeeeE-------EEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-CceEEECCccCCCCCHHHH
Q 001980 748 RHVDFAYPSRPDVVVFKDFNL-------RIRAGQSQALVGASGSGKSSVIALIERFYDPT-AGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 748 ~~vsf~Y~~~~~~~vL~~vsl-------~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~i~l~~l 819 (987)
.+++++|... ..+.|+++.+ .+.+|+.++|+|||||||||++++|.|+++|+ +|.|...+.++. +. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 5788888543 3456777776 78899999999999999999999999999987 566655443332 22 2
Q ss_pred hcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 820 RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 820 R~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
+...++++|.+.-... ++-.+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~~------------------------------------------------~~~~~----~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRDT------------------------------------------------LGFSE----ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTTB------------------------------------------------SCHHH----HHHHHTT
T ss_pred hccccceeeeeecccc------------------------------------------------CCHHH----HHHHHhh
Confidence 3445666665432110 01111 9999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeC
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 956 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~ 956 (987)
.+|++|++|||| |.++...+.++ ...|+|||+++|+.+.+..+||+++|..
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcC
Confidence 999999999999 77776555544 3358999999999999988899887744
No 187
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.66 E-value=3.4e-18 Score=177.85 Aligned_cols=170 Identities=16% Similarity=0.240 Sum_probs=106.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccC-----CCCCceEEE-------CCccC-
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY-----DPTAGKVMI-------DGKDI- 811 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~-----~p~~G~I~i-------dG~di- 811 (987)
|+++|++|+|. .++|++ |.+++|++++|+|++|||||||++.|.|.. .|+.|.+.+ ++..+
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999994 247888 889999999999999999999999999998 788887654 22222
Q ss_pred --CCCC--------HHHHhcccEEEccccccccc-cHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCC
Q 001980 812 --RRLN--------LKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGER 880 (987)
Q Consensus 812 --~~i~--------l~~lR~~i~~VpQdp~lF~g-TIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~ 880 (987)
.... .+.+|+.++.+.|++..+++ ++..++..+.. ..++++.+.++..++... .++..
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~~~~~~~----------~v~nK 146 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVDSNIAVL----------VLLTK 146 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHTTCCEE----------EEEEC
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHHHHHHHcCCCeE----------EEEec
Confidence 2221 13456666666665433332 33344432211 112344444433322111 12334
Q ss_pred CCCCChhHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC
Q 001980 881 GVQLSGGQKQR-IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 931 (987)
Q Consensus 881 G~~LSgGQrQr-laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~ 931 (987)
-..+|+||||| +..+|+++++|+++++|||||++|......+.+.|.+..+
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 44699999999 8999999999999999999999999999999999988653
No 188
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.66 E-value=1.7e-17 Score=185.78 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=112.3
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCc----cE-EEECCEeCCCCCHHHHhcceEEEcCCCCCc
Q 001980 117 IFRDF-SIFFPAGKTVAVVGGSGSGKSTVVSLIERFY--DPNA----GH-VLLDNVDIKTLQLRWLRDQIGLVNQEPALF 188 (987)
Q Consensus 117 ~l~~i-~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~--~~~~----G~-i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 188 (987)
.|+++ ++.+++|++++|+||||||||||++.+++.+ +|+. |+ |++++.+.. .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 56665 6899999999999999999999999999998 6666 68 899986641 145688999999888
Q ss_pred hhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc-------cCCCEEE
Q 001980 189 ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML-------KNPKILL 261 (987)
Q Consensus 189 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~-------~~~~ill 261 (987)
..++.+||.+.... . |++|+|++.++++++ .+|+++|
T Consensus 193 ~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 193 PDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 88999999876431 1 234555555555555 6899999
Q ss_pred EeCCCCCCChHH------------HHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecCh
Q 001980 262 LDEATSALDAGS------------ESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTH 320 (987)
Q Consensus 262 lDEpts~LD~~~------------~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 320 (987)
+||||+.+|+.. ...+.+.|.++. .+.|+|+++|....... ++...+...|++++.+.+
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCS
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCc
Confidence 999999999862 234445555553 38999999998765443 234556666776655543
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.65 E-value=3.1e-18 Score=187.98 Aligned_cols=162 Identities=15% Similarity=0.076 Sum_probs=80.4
Q ss_pred EeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC-CCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 001980 103 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF-YDPNAGHVLLDNVDIKTLQLRWLRDQIGLV 181 (987)
Q Consensus 103 ~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 181 (987)
+|++++|+. ..++++++|+| +|+|+||+|||||++.|.|. ..|++| +.++|.++... .. .+.++|+
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t--~~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT--VQ-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc--ce-EeeEEEE
Confidence 478889974 34899999988 99999999999999999998 889999 88888776431 11 3468999
Q ss_pred cCCCCCc-hhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001980 182 NQEPALF-ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKIL 260 (987)
Q Consensus 182 ~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~il 260 (987)
+|++.++ .-|+.|+..++......++....... +.+... ....++|||||||+.+|||+. ++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~-----------~~~~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFE-----------RYLHDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHH--HHHHHH-----------HHHHHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHH-----------HHHHHhCHHhhhhhhhhhhhh----ee
Confidence 9987665 44888888776431110111111110 111111 122369999999999999986 99
Q ss_pred EEeCCCCC-CChHHHHHHHHHHHhhhC--CCeEEEEcCCCC
Q 001980 261 LLDEATSA-LDAGSESIVQEALDRLMV--GRTTVVVAHRLS 298 (987)
Q Consensus 261 llDEpts~-LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~ 298 (987)
++||||++ ||+... +.++++.. +.++|+.+||+.
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 99999985 999874 33444432 567888889874
No 190
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.65 E-value=9.8e-17 Score=175.44 Aligned_cols=151 Identities=24% Similarity=0.235 Sum_probs=105.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHH--hcceEEEcCCCCCchh-cHHHHHhcC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ----LRWL--RDQIGLVNQEPALFAT-TILENILYG 199 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~--~~~i~~v~Q~~~l~~~-tv~eni~~~ 199 (987)
+|++++|+||||||||||++.|+|+++|++|+|.++|.|+.... ...+ +..++|++|++.+++. |+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999986543 1222 4579999999988865 899998643
Q ss_pred CCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHH
Q 001980 200 KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279 (987)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~ 279 (987)
.. .+....+-..+ |... .....++..++||++||||+..+|+.++| .||+.+...+.+
T Consensus 181 ~~-------------~~~d~~llDt~-G~~~---~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~ 238 (304)
T 1rj9_A 181 KA-------------RGYDLLFVDTA-GRLH---TKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLE 238 (304)
T ss_dssp HH-------------HTCSEEEECCC-CCCT---TCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHH
T ss_pred Hh-------------CCCCEEEecCC-CCCC---chHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHH
Confidence 10 00000000011 1110 01112466779999999999999994444 455554445555
Q ss_pred HHHhhh--CCCeEEEEcCCCCc
Q 001980 280 ALDRLM--VGRTTVVVAHRLST 299 (987)
Q Consensus 280 ~l~~~~--~~~tvi~vtH~~~~ 299 (987)
.++.+. .+.|+|++||....
T Consensus 239 ~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 239 QAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHcCCcEEEEECCccc
Confidence 555543 28899999998554
No 191
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.65 E-value=2e-18 Score=207.14 Aligned_cols=188 Identities=18% Similarity=0.227 Sum_probs=118.7
Q ss_pred cEEEEeEEEECCCCCCccceeee----------eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEeCC
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDF----------SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-NAGHVLLDNVDIK 167 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i----------~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-~~G~i~~~g~~~~ 167 (987)
.++++|+++.|+.. ..++|+.+ +++++. ++|+||||||||||+++|+|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47899999999632 12344433 366665 999999999999999999999988 8999999999863
Q ss_pred CC---CHHHHhcceEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 168 TL---QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 168 ~~---~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
.. ....+++.++|++|++.+++. ||++||.+.. ..+..... .+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------------~~~~~~~~-----------~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------------NAIAGEGM-----------GIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------------HHHHCSSS-----------CCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------------HHhcCCcc-----------ccc---
Confidence 21 234567899999999988765 9999986421 00111111 111
Q ss_pred HHHHHHHHHhccCCCEEEEeCC------CCCCChHHHHHHHHHHHhhh-C--CCeEEEEcCCCCccc-------------
Q 001980 244 KQRIAIARAMLKNPKILLLDEA------TSALDAGSESIVQEALDRLM-V--GRTTVVVAHRLSTIR------------- 301 (987)
Q Consensus 244 kqRialARal~~~~~illlDEp------ts~LD~~~~~~i~~~l~~~~-~--~~tvi~vtH~~~~~~------------- 301 (987)
++++.++.+....|+++|+||| |++||+..+..+.+.+.++. + +.+++++||+++...
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 2334445555668999999999 99999999999999999863 2 578889999987431
Q ss_pred cCCEEEEEeCCEEEEecChHH
Q 001980 302 NVDTVAVIQQGQVVETGTHEE 322 (987)
Q Consensus 302 ~~d~i~~l~~G~i~~~g~~~~ 322 (987)
....|+|+.++.++..|+.++
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTC
T ss_pred CCceEEEecchhhcCcccHHH
Confidence 125688888887777776443
No 192
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=1e-17 Score=190.49 Aligned_cols=166 Identities=13% Similarity=0.163 Sum_probs=102.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
+.|+++|++++|.. .++++|+||+| +|||+||||||||+++|+|...|..| .+|.++...+ ...+..
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 46999999999953 35999999998 99999999999999999999876555 2444433211 112467
Q ss_pred cEEEccccccc-cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 823 IGLVQQEPALF-AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 823 i~~VpQdp~lF-~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
+++++|++.++ ..||.||+.++.. ...++.|+.+ .+++.. .++.+.+||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~-~~~~~~~~~i-----~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA-VDNSNCWQPV-----IDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHHH-----HHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhh-ccchhhHHHH-----HHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998776 6799999876643 2222333322 122321 2556777899999999999
Q ss_pred CC---EEEEeCCC-CCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 001980 902 PA---ILLLDEAT-SALDAESECVLQEALERLMRGRTTVLVAHRLSTI 945 (987)
Q Consensus 902 p~---ILlLDEaT-S~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti 945 (987)
|+ +|++|||| +++|+... .+.+.| ..+.++|.|.|+.+++
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~-~~lk~L---~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDI-EFMKRL---HEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHH-HHHHHH---TTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHH-HHHHHH---hccCcEEEEEEcccCc
Confidence 99 99999999 69998763 333333 4578999999988764
No 193
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.65 E-value=1e-18 Score=209.74 Aligned_cols=190 Identities=17% Similarity=0.234 Sum_probs=121.9
Q ss_pred cEEEEeEEEECCCCCCccceeee----------eEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-CCceEEECCccCC
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDF----------NLRIRAGQSQALVGASGSGKSSVIALIERFYDP-TAGKVMIDGKDIR 812 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~v----------sl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-~~G~I~idG~di~ 812 (987)
.++++|+++.|+.. ..++|+.+ +++++. +||||+||||||||+++|.|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 48899999999532 12455544 366665 999999999999999999999988 7999999999963
Q ss_pred C---CCHHHHhcccEEEcccccccc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 813 R---LNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 813 ~---i~l~~lR~~i~~VpQdp~lF~-gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
. -....+|.++++++|++.+++ .||++|+..+ .... ..... .+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~------------~~~~------~~~~~-----------~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA------------QNAI------AGEGM-----------GIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH------------HHHH------HCSSS-----------CCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHH------------HHHh------cCCcc-----------ccc---
Confidence 2 124568899999999998775 5899998532 1110 00011 112
Q ss_pred HHHHHHHHHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHcC---CCeEEEEecCchhh--------hc----
Q 001980 889 KQRIAIARAVLKNPAILLLDEA------TSALDAESECVLQEALERLMR---GRTTVLVAHRLSTI--------RG---- 947 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEa------TS~LD~~te~~I~~~l~~~~~---~~TvI~IaHRl~ti--------~~---- 947 (987)
++++.++++....|+++++||| |+++|+.+.+.+.+.++++.+ +.++++++|+++.. ..
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 2334445555668999999999 999999999999999998642 45677889987632 22
Q ss_pred -cCEEEEEeCCEEEEecChhHHh
Q 001980 948 -VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 948 -~D~Iivl~~G~ive~Gt~~eLl 969 (987)
...|+|+.++.+++.|++++++
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCC
T ss_pred CCceEEEecchhhcCcccHHHHH
Confidence 3569999999999888876544
No 194
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.64 E-value=9.1e-19 Score=198.28 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=110.6
Q ss_pred eeeeeEEEeC--CcEEEEEcCCCccHHHHHHHHHcCCCCCc----cEEEEC----CEeCCCCCHHHHhcceEEEcCCCCC
Q 001980 118 FRDFSIFFPA--GKTVAVVGGSGSGKSTVVSLIERFYDPNA----GHVLLD----NVDIKTLQLRWLRDQIGLVNQEPAL 187 (987)
Q Consensus 118 l~~i~l~i~~--G~~~~ivG~sGsGKSTLl~~l~g~~~~~~----G~i~~~----g~~~~~~~~~~~~~~i~~v~Q~~~l 187 (987)
.+.|++++++ |++++|+||||||||||+++|+|+++|++ |++.++ |.++ .++..++ .+|+|++|++.+
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHH
Confidence 4679999999 99999999999999999999999999999 998873 5554 4444444 459999999888
Q ss_pred chhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc-cCCCEEEEeC--
Q 001980 188 FATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML-KNPKILLLDE-- 264 (987)
Q Consensus 188 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~-~~~~illlDE-- 264 (987)
|..|++|||.++.......... .+|+|++||..+++++. .+|++++|||
T Consensus 236 ~~~t~~~nl~~~~~~~~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~lllLdE~~ 287 (365)
T 1lw7_A 236 YAVRHSHKIAFIDTDFITTQAF----------------------------CIQYEGKAHPFLDSMIKEYPFDVTILLKNN 287 (365)
T ss_dssp HHHHHCSSEEEESSCHHHHHHH----------------------------HHHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred HHHhccCCEEEEeCCchHHHHH----------------------------HHHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 8899999998875321111110 13445566666666664 4777777777
Q ss_pred -CC------CCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEE
Q 001980 265 -AT------SALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVI 309 (987)
Q Consensus 265 -pt------s~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l 309 (987)
|+ +++|+..+..+.+.+.++.+ +.++|+++|.-..-+.+|++.++
T Consensus 288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i 341 (365)
T 1lw7_A 288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVI 341 (365)
T ss_dssp CC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 54 46777777777777766533 67777777653222224544444
No 195
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.64 E-value=1.8e-17 Score=177.44 Aligned_cols=179 Identities=18% Similarity=0.195 Sum_probs=107.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeE--EEeCCcEEEEEcCCCccHHHHHHHHH--cCCCCCccEEEECCEeCCCCCHHHHh
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSI--FFPAGKTVAVVGGSGSGKSTVVSLIE--RFYDPNAGHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l--~i~~G~~~~ivG~sGsGKSTLl~~l~--g~~~~~~G~i~~~g~~~~~~~~~~~~ 175 (987)
+++++++..|+ .|+++ + .|++|++++|+||||||||||+++|+ |..++.+|.+.+++.+... ......
T Consensus 7 ~~~~~i~tg~~------~lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 78 (251)
T 2ehv_A 7 QPVRRVKSGIP------GFDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREM 78 (251)
T ss_dssp -CCCEECCSCT------TTGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHH
T ss_pred cccceeecCCH------hHHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHH
Confidence 44556665554 23333 2 68999999999999999999999999 7656778888887643211 112233
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+.++|.+|++..+.. ++.++..... .... .. .. . .....+-++.++...+..-.
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~----~~--~~-~------------~~~~~~~~~~~~~~~~~l~~ 133 (251)
T 2ehv_A 79 ASFGWDFEKYEKEGKIAIVDGVSSVV------GLPS----EE--KF-V------------LEDRFNVDNFLRYIYRVVKA 133 (251)
T ss_dssp HTTTCCHHHHHHTTSEEEEC--------------------------------------------CCHHHHHHHHHHHHHH
T ss_pred HHcCCChHHHhhcCCEEEEEcccccc------cccc----cc--ce-e------------ccCcccHHHHHHHHHHHHHh
Confidence 457777765422111 2222211100 0000 00 00 0 00112344544444444445
Q ss_pred cCCCEEEEeCCCCCCC-----hHHHHHHHHHHHhhh-CCCeEEEEcCCCCcc----------ccC-CEEEEEeC
Q 001980 255 KNPKILLLDEATSALD-----AGSESIVQEALDRLM-VGRTTVVVAHRLSTI----------RNV-DTVAVIQQ 311 (987)
Q Consensus 255 ~~~~illlDEpts~LD-----~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~----------~~~-d~i~~l~~ 311 (987)
.+|++++|||||+++| +..++.+.+.++.++ .|+|+|++||+++.. ..| |+|++|++
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 7999999999999997 566667888887775 489999999998886 347 99999963
No 196
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.63 E-value=1e-18 Score=182.23 Aligned_cols=140 Identities=17% Similarity=0.187 Sum_probs=105.7
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCch---hcHHHHHhcCC-
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA---TTILENILYGK- 200 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~---~tv~eni~~~~- 200 (987)
.++|++++|+||||||||||+++|+|++.| +++|++|++.+++ -|+++|+.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998864 4899999998763 27888776532
Q ss_pred -CC-CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH----HHHHHHHHHhccCCCEEEEeCCCCC------
Q 001980 201 -PE-ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ----KQRIAIARAMLKNPKILLLDEATSA------ 268 (987)
Q Consensus 201 -~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq----kqRialARal~~~~~illlDEpts~------ 268 (987)
+. ...+++.+.++..+ ....+...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALL-----------RGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHH-----------TTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHH-----------cCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 21 12334444433221 1122333466788886 5799999999999999999999999
Q ss_pred -CChHHHHHHHHHHHhh--hCCCeEEEEcCCC
Q 001980 269 -LDAGSESIVQEALDRL--MVGRTTVVVAHRL 297 (987)
Q Consensus 269 -LD~~~~~~i~~~l~~~--~~~~tvi~vtH~~ 297 (987)
||+..+..+.+.+.+. .+|+|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999899888765 2589999999974
No 197
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.61 E-value=5.1e-17 Score=181.41 Aligned_cols=147 Identities=22% Similarity=0.269 Sum_probs=103.4
Q ss_pred EeEEEECCCCCCccceeeeeE-------EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEeCCCCCHHHH
Q 001980 103 KNVTFSYPSRPDVIIFRDFSI-------FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-AGHVLLDNVDIKTLQLRWL 174 (987)
Q Consensus 103 ~~~~~~y~~~~~~~~l~~i~l-------~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~ 174 (987)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.++ ++. .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 4677777433 3446677766 67899999999999999999999999999997 56665433222 111 1
Q ss_pred hcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 175 RDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 175 ~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+...++++|.+.-.. . ++-.+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~------------------------------------~~~~~----~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------T------------------------------------LGFSE----ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------B------------------------------------SCHHH----HHHHHTT
T ss_pred hccccceeeeeeccc------------c------------------------------------CCHHH----HHHHHhh
Confidence 223445555431110 0 11111 9999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCC
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQG 312 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G 312 (987)
.+|+++++|||| |+++.+.+.+. ...|+|+++++|+.+.+..+||++.|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77775555444 23599999999999998778999888554
No 198
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.61 E-value=2.8e-20 Score=209.54 Aligned_cols=222 Identities=12% Similarity=0.007 Sum_probs=136.4
Q ss_pred HHHHHHHHc-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCccE-
Q 001980 23 WYAGVFIRN-GVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNI- 100 (987)
Q Consensus 23 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i- 100 (987)
++|++.+.. +.++.+.+..++.++.....+ .+......+..+..+..|+++++ +|..................+
T Consensus 53 ~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~it 128 (361)
T 2gza_A 53 RASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRRT 128 (361)
T ss_dssp ETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCCC
T ss_pred ECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCCC
Confidence 345544454 678888877665544432222 11111111222233456777666 222111000000000011234
Q ss_pred --------EEEeEEEE---CCCCCCccce---------eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE
Q 001980 101 --------EFKNVTFS---YPSRPDVIIF---------RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 160 (987)
Q Consensus 101 --------~~~~~~~~---y~~~~~~~~l---------~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~ 160 (987)
+|++++|+ |+.. +.++| +++||.+++|+.++|+||||||||||+++|+|+++|++|.|.
T Consensus 129 l~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ 207 (361)
T 2gza_A 129 LEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLIT 207 (361)
T ss_dssp HHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEE
T ss_pred HHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEE
Confidence 78899998 8531 12355 999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcceEEEc-CCCCC---chhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCC
Q 001980 161 LDNVDIKTLQLRWLRDQIGLVN-QEPAL---FATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERG 236 (987)
Q Consensus 161 ~~g~~~~~~~~~~~~~~i~~v~-Q~~~l---~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g 236 (987)
++|. .++.....++.++|++ |++.+ +..|+++||..+.....+..+...++...+.+++..+|.|.+|.+++-.
T Consensus 208 ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H 285 (361)
T 2gza_A 208 IEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCH 285 (361)
T ss_dssp EESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEE
T ss_pred ECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEEC
Confidence 9974 3444444567899999 88875 6679999999864422211111111223345677777889999888877
Q ss_pred CCCChHHHHHHHHHH
Q 001980 237 VQLSGGQKQRIAIAR 251 (987)
Q Consensus 237 ~~LSgGqkqRialAR 251 (987)
.+-..+..+|+....
T Consensus 286 ~~~~~~~~~Rl~~l~ 300 (361)
T 2gza_A 286 AGSCELTFERLALMV 300 (361)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 777899999998775
No 199
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.61 E-value=3.8e-18 Score=185.55 Aligned_cols=121 Identities=13% Similarity=0.081 Sum_probs=93.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC------
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK------ 845 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~------ 845 (987)
++.+|||+|+||||||||+++|.+++.+. | . . ++.+.+|+||+++|++++++|+.++.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 46789999999999999999999999864 2 1 1 45566779999999999999986542
Q ss_pred -----CCCCHHHHHHHHHHcCchhhHhhCCCcCCCc------cCCCCCCCChhHHHHHHHH--HHHccCCCEEEEeCCCC
Q 001980 846 -----EGATEAEVVEAARAANVHGFVSALPNAYKTP------VGERGVQLSGGQKQRIAIA--RAVLKNPAILLLDEATS 912 (987)
Q Consensus 846 -----~~~sd~ei~~al~~a~l~~~i~~lp~gldt~------vge~G~~LSgGQrQrlaLA--RAllr~p~ILlLDEaTS 912 (987)
|++.| ...+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|||+||+|+
T Consensus 94 ~~~g~p~a~d--------~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~ 163 (290)
T 1odf_A 94 QGRGLPGTHD--------MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFL 163 (290)
T ss_dssp SSSCSTTSBC--------HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESST
T ss_pred hhccCcchhH--------HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccc
Confidence 33222 234567788889998764 3456789999999999998 666 999999999999
Q ss_pred CCCHHH
Q 001980 913 ALDAES 918 (987)
Q Consensus 913 ~LD~~t 918 (987)
++|+++
T Consensus 164 ~ld~~~ 169 (290)
T 1odf_A 164 GFNPIL 169 (290)
T ss_dssp TCCCCC
T ss_pred cCCccc
Confidence 999865
No 200
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.61 E-value=1.8e-15 Score=150.83 Aligned_cols=78 Identities=23% Similarity=0.275 Sum_probs=71.0
Q ss_pred CCCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEE--e
Q 001980 882 VQLSGGQKQRIAIARAVL----KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVV--Q 955 (987)
Q Consensus 882 ~~LSgGQrQrlaLARAll----r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl--~ 955 (987)
..||||||||++|||+++ ++|+++||||||++||+.+...+.+.|++..++.++|+|+||..+...||+|+++ +
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~ 142 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMR 142 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEec
Confidence 469999999999999996 5679999999999999999999999999988888999999999999999999855 5
Q ss_pred CCEE
Q 001980 956 DGRI 959 (987)
Q Consensus 956 ~G~i 959 (987)
+|..
T Consensus 143 ~g~s 146 (173)
T 3kta_B 143 DGVS 146 (173)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 7754
No 201
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.61 E-value=2.2e-19 Score=185.11 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=114.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC-------------CCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcH
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYD-------------PNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTI 192 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~-------------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv 192 (987)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|+++++.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999886 78887 588888888888888765 79999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH-HhccCCCEEEEeCCCCCCCh
Q 001980 193 LENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR-AMLKNPKILLLDEATSALDA 271 (987)
Q Consensus 193 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR-al~~~~~illlDEpts~LD~ 271 (987)
.+|+ +|. +.+++.++++..... .+...|.|+++.... ++ .|| +++.+|++++|||+|+++|.
T Consensus 77 ~~n~-~g~---~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 77 SGNL-YGT---SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp TTEE-EEE---EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred cCcc-CCC---CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 9998 664 345566555431100 011123344443221 12 567 78999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeC
Q 001980 272 GSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ 311 (987)
Q Consensus 272 ~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~ 311 (987)
++++.+.+.|.+..++ +.++| +. ..+|+|+++++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999998776543 24456 22 67899988764
No 202
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.60 E-value=3e-17 Score=180.14 Aligned_cols=163 Identities=15% Similarity=0.175 Sum_probs=79.6
Q ss_pred EeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc-CCCCCceEEECCccCCCCCHHHHhcccEEE
Q 001980 748 RHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF-YDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 826 (987)
Q Consensus 748 ~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl-~~p~~G~I~idG~di~~i~l~~lR~~i~~V 826 (987)
+|++++|.. ..++++++|+| +|+|+||+|||||++.|++. ..|.+| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 478888853 35999999998 99999999999999999998 888999 9999988754 11 1 4668999
Q ss_pred ccccccc-cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEE
Q 001980 827 QQEPALF-AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAIL 905 (987)
Q Consensus 827 pQdp~lF-~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~IL 905 (987)
+|++.++ .-|+.||..++... ...+-++. +.+.+.. -++..+ .++|||||||+++|||+. +|
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~-~~~e~~~~-----l~~~l~~---~~~~~~----~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAI-NCRDCFKT-----IISYIDE---QFERYL----HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC------------CTT-----HHHHHHH---HHHHHH----HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhc-CcHHHHHH-----HHHHHHH---HHHHHH----HHhCHHhhhhhhhhhhhh----ee
Confidence 9987554 56888887654321 11111110 0011110 011112 258999999999999986 99
Q ss_pred EEeCCCCC-CCHHHHHHHHHHHHHHcC--CCeEEEEecCchh
Q 001980 906 LLDEATSA-LDAESECVLQEALERLMR--GRTTVLVAHRLST 944 (987)
Q Consensus 906 lLDEaTS~-LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~t 944 (987)
++||||++ ||+... +.+++..+ +.++|+..|++.+
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 99999985 999874 33444333 4577777898753
No 203
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.60 E-value=1.6e-17 Score=172.75 Aligned_cols=168 Identities=14% Similarity=0.160 Sum_probs=98.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----CCCccEEEEC-------CEeCC
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY-----DPNAGHVLLD-------NVDIK 167 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-----~~~~G~i~~~-------g~~~~ 167 (987)
|+++|++|.|+. +++++ |++++|..++|+|+||||||||++.|+|.. .|+.|.+... +..+.
T Consensus 4 l~~~~~~~~~~~----~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMSA----PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEEE----SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheeec----CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 789999999962 36787 889999999999999999999999999998 7888877542 22221
Q ss_pred C---CC--------HHHHhcceEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccC
Q 001980 168 T---LQ--------LRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYST-QVGE 234 (987)
Q Consensus 168 ~---~~--------~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~ 234 (987)
+ .. .+.++..++++.|+....++ .+..++..+ .+... .+. .+.+... +... .++.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~-~~~------~~~~~~~--~~~~~~v~n 145 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP---LKDLD-QQM------IEWAVDS--NIAVLVLLT 145 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC---CCHHH-HHH------HHHHHHT--TCCEEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC---CchhH-HHH------HHHHHHc--CCCeEEEEe
Confidence 1 10 01222233333333222221 221222111 11111 111 1122221 3333 2466
Q ss_pred CCCCCChHHHHH-HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 001980 235 RGVQLSGGQKQR-IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 285 (987)
Q Consensus 235 ~g~~LSgGqkqR-ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 285 (987)
+...+|+||||| +..+|+++.+|+++++|||||++|....+.+++.|.++.
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 677899999999 899999999999999999999999999999999998764
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=4.1e-17 Score=185.50 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=99.5
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
+.|.++|++++|+. ..+++++||+| +|+|+||||||||++.|+|...|..| .+|.++... ....+..
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeee
Confidence 35889999999974 34899999998 99999999999999999999886655 133222111 1111346
Q ss_pred eEEEcCCCCCc-hhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPALF-ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
++|++|++.++ ..||.||+.++..... ...+.. +.+++.. .++.+++||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAVDN-SNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhccc-hhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998876 4599999988754211 111111 1122221 3455677899999999999
Q ss_pred CC---EEEEeCCC-CCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcc
Q 001980 257 PK---ILLLDEAT-SALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300 (987)
Q Consensus 257 ~~---illlDEpt-s~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~ 300 (987)
|+ ++++|||| ++||+..... ++.+..+.++|+|.|..+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDIEF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHHHH----HHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHHHH----HHHHhccCcEEEEEEcccCc
Confidence 99 99999999 6999876433 33344578899999887654
No 205
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.60 E-value=2.4e-16 Score=194.50 Aligned_cols=159 Identities=15% Similarity=0.160 Sum_probs=103.1
Q ss_pred cEEEEeEEEECC----CCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH
Q 001980 99 NIEFKNVTFSYP----SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL 174 (987)
Q Consensus 99 ~i~~~~~~~~y~----~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 174 (987)
.+.+++...-.= ...+..+++|+||++++|++++|+||||||||||+|++.+.....
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------- 700 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------- 700 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------------------
Confidence 577776543220 112356899999999999999999999999999999987532110
Q ss_pred hcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 175 RDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 175 ~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+.-.++|++..-+ .+.+++. . .+ |....+..+..++|+|++|+..++++ +
T Consensus 701 -q~g~~vpa~~~~i--~~~d~i~-~-----------------------~i--g~~d~l~~~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 701 -QIGSYVPAEEATI--GIVDGIF-T-----------------------RM--GAADNIYKGRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp -HHTCCBSSSEEEE--ECCSEEE-E-----------------------EC------------CCHHHHHHHHHHHHHH-C
T ss_pred -hcCccccchhhhh--hHHHHHH-H-----------------------hC--ChHHHHHHhHHHhhHHHHHHHHHHHh-c
Confidence 0011222221000 0000000 0 00 11111122235789999999999999 8
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHH-HHHHhhh--CCCeEEEEcCCCCccccCCEE
Q 001980 255 KNPKILLLDEATSALDAGSESIVQ-EALDRLM--VGRTTVVVAHRLSTIRNVDTV 306 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~-~~l~~~~--~~~tvi~vtH~~~~~~~~d~i 306 (987)
.+|+++||||||+|||+.....+. ..++.+. .|.|+|++||+++....+|+.
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 999999999999999999877776 5555553 489999999998887666543
No 206
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.59 E-value=2.4e-15 Score=150.00 Aligned_cols=80 Identities=24% Similarity=0.302 Sum_probs=71.1
Q ss_pred CCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEE-
Q 001980 235 RGVQLSGGQKQRIAIARAML----KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVI- 309 (987)
Q Consensus 235 ~g~~LSgGqkqRialARal~----~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l- 309 (987)
....||||||||++|||+++ ++|+++||||||++||+.++..+.+.|+++.++.++|+|||+...+..||+++.+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 34679999999999999996 5679999999999999999999999999887778999999998888889999855
Q ss_pred -eCCEE
Q 001980 310 -QQGQV 314 (987)
Q Consensus 310 -~~G~i 314 (987)
++|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 57753
No 207
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.57 E-value=4.4e-16 Score=164.55 Aligned_cols=165 Identities=12% Similarity=0.053 Sum_probs=110.5
Q ss_pred ccceeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc---ceEEEcCCCCCchh
Q 001980 115 VIIFRDFSI-FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD---QIGLVNQEPALFAT 190 (987)
Q Consensus 115 ~~~l~~i~l-~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~---~i~~v~Q~~~l~~~ 190 (987)
.+.|+++.. .+++|++++|+||||||||||++.|++...+.+|.+.+.+.+. +...++. .+++.+|+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 81 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI---- 81 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh----
Confidence 346888887 8999999999999999999999999998888888877654332 1222111 2233222210
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCC
Q 001980 191 TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK--ILLLDEATSA 268 (987)
Q Consensus 191 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~--illlDEpts~ 268 (987)
.+++.+-... . ... + ...+. ...|.+|.++...+.+...+|+ ++++||||+.
T Consensus 82 --~~~~~~~~~~-~--------------~~~-----~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 82 --EKKLIIIDAL-M--------------KEK-----E-DQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp --TTTEEEEECC-C------------------------CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred --hCCEEEEecc-c--------------ccc-----C-ceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 0011100000 0 000 0 00011 1349999998888888778999 9999999988
Q ss_pred C--ChHHHHHHHHHHHhhh--CCCeEEEEcCCC--------Ccccc-CCEEEEEeCC
Q 001980 269 L--DAGSESIVQEALDRLM--VGRTTVVVAHRL--------STIRN-VDTVAVIQQG 312 (987)
Q Consensus 269 L--D~~~~~~i~~~l~~~~--~~~tvi~vtH~~--------~~~~~-~d~i~~l~~G 312 (987)
+ |+.....+.+.|+++. .+.|+|++||.. ..+.. ||+|++|++.
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 8 9988888888888774 488999999998 44555 8999999764
No 208
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.56 E-value=1.1e-15 Score=161.35 Aligned_cols=164 Identities=13% Similarity=0.023 Sum_probs=114.2
Q ss_pred ccceeeeeE-EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhc---ccEEEccccccccc
Q 001980 760 VVVFKDFNL-RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL---KIGLVQQEPALFAA 835 (987)
Q Consensus 760 ~~vL~~vsl-~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~---~i~~VpQdp~lF~g 835 (987)
.+.|+++.. .+++|+.++|+|++|||||||++.|.+...+.+|.+.+.+.+. +.+.++. .+++.+|+...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh---
Confidence 357899988 8999999999999999999999999998888888888876554 2333332 34444443211
Q ss_pred cHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCC-CccCCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCC
Q 001980 836 SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYK-TPVGERGVQLSGGQKQRIAIARAVLKNPA--ILLLDEATS 912 (987)
Q Consensus 836 TIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~~LSgGQrQrlaLARAllr~p~--ILlLDEaTS 912 (987)
+++..-.. .. ..++ ..+- ...|.+|.++.+.+.+...+|+ +||+||||+
T Consensus 83 ---~~~~~~~~-~~---------------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 83 ---KKLIIIDA-LM---------------------KEKEDQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp ---TTEEEEEC-CC-------------------------CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred ---CCEEEEec-cc---------------------cccCceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 01110000 00 0000 0011 1348999998888888778999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHc--CCCeEEEEecCc--------hhhh-ccCEEEEEeCC
Q 001980 913 AL--DAESECVLQEALERLM--RGRTTVLVAHRL--------STIR-GVDCIGVVQDG 957 (987)
Q Consensus 913 ~L--D~~te~~I~~~l~~~~--~~~TvI~IaHRl--------~ti~-~~D~Iivl~~G 957 (987)
.+ |+.....+.+.|++.. .++|+|+++|.. ..+. .||+|++|+..
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 9988888888888764 489999999998 3354 48999999864
No 209
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.55 E-value=2.5e-15 Score=185.48 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=103.9
Q ss_pred ccEEEEeEEEECC------CCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH
Q 001980 743 GEIELRHVDFAYP------SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 816 (987)
Q Consensus 743 g~I~f~~vsf~Y~------~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l 816 (987)
+.|.+++. ++| ...+..|++|+||++++|+.++|+|||||||||+++++.++.-
T Consensus 639 ~~i~i~~~--rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~------------------ 698 (918)
T 3thx_B 639 RKIVIKNG--RHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI------------------ 698 (918)
T ss_dssp CEEEEEEE--CCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH------------------
T ss_pred CcEEEEec--cchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH------------------
Confidence 45777764 343 1113469999999999999999999999999999999865321
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+.+.-+++|++..-+ .+.+++. ...++.+. +..+-..||+|++|+..++|
T Consensus 699 --~aq~g~~vpa~~~~i--~~~d~i~---------------~~ig~~d~-----------l~~~~stfs~em~~~~~il~ 748 (918)
T 3thx_B 699 --MAQIGSYVPAEEATI--GIVDGIF---------------TRMGAADN-----------IYKGRSTFMEELTDTAEIIR 748 (918)
T ss_dssp --HHHHTCCBSSSEEEE--ECCSEEE---------------EEC---------------------CCHHHHHHHHHHHHH
T ss_pred --HhhcCccccchhhhh--hHHHHHH---------------HhCChHHH-----------HHHhHHHhhHHHHHHHHHHH
Confidence 111122344433111 0001110 01111111 11222468999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHc--CCCeEEEEecCchhhhccCE
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQ-EALERLM--RGRTTVLVAHRLSTIRGVDC 950 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~-~~l~~~~--~~~TvI~IaHRl~ti~~~D~ 950 (987)
+ +.+|++|||||||+++|+.....+. ..++.+. .++|+|++||.++....+|+
T Consensus 749 ~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 749 K-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp H-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred h-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 9 8999999999999999998887776 5555542 48999999999887765544
No 210
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.55 E-value=5.1e-16 Score=161.82 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=105.7
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhccCCC--CCceEEECCccCCCCCHHHHhcccEEEccccccccc-cH----HHH
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDP--TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SI----FDN 840 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~g-TI----reN 840 (987)
-+.++|+.++|+||||||||||+++|.++++| ..|.|.+++.+.+. ..+..++|+||++.+|.. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 45789999999999999999999999999986 68999998877643 246789999999988864 33 455
Q ss_pred hccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001980 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 920 (987)
Q Consensus 841 L~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~ 920 (987)
+.+... +.|-.++ -++.++.+++++||| ||+.+..
T Consensus 87 ~~~~~~-------------------------------------~yg~~~~---~v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 87 AEVFGN-------------------------------------YYGTSRE---AIEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp EEETTE-------------------------------------EEEEEHH---HHHHHHTTTCEEEEE-----CCHHHHH
T ss_pred HHHHhc-------------------------------------cCCCCHH---HHHHHHhcCCeEEEE-----ECHHHHH
Confidence 543210 0000011 134455667999999 9999999
Q ss_pred HHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhc
Q 001980 921 VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 921 ~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
.+.+.+. +++||++++|+++.+.. |+ +.+| .++++++.+
T Consensus 122 ~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 122 QIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 9998876 57899999999998876 43 6777 678888754
No 211
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.55 E-value=8.9e-16 Score=187.96 Aligned_cols=167 Identities=12% Similarity=0.134 Sum_probs=108.6
Q ss_pred cEEEEeEEEECCC--CCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEeCCCCCHHHHh
Q 001980 99 NIEFKNVTFSYPS--RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-NAGHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~--~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-~~G~i~~~g~~~~~~~~~~~~ 175 (987)
.+.+++...-.-. ..+..+++|++|+ ++|++++|+||||||||||+|+|+|+..+ ..|. .+.. -+
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa-----~~ 644 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA-----QK 644 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----SE
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----hc
Confidence 4777765421100 0134589999999 99999999999999999999999997432 2221 1110 02
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
..+++++| +|.. ++.||+..+ ..++|+|+++ ++.+...+
T Consensus 645 ~~i~~~~~---i~~~~~~~d~l~~~------------------------------------~stf~~e~~~-~~~il~~a 684 (800)
T 1wb9_A 645 VEIGPIDR---IFTRVGAADDLASG------------------------------------RSTFMVEMTE-TANILHNA 684 (800)
T ss_dssp EEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHHHHC
T ss_pred ccceeHHH---HHhhCCHHHHHHhh------------------------------------hhhhhHHHHH-HHHHHHhc
Confidence 34666655 3433 454544321 1245677664 44444568
Q ss_pred cCCCEEEEeCCCCCCChHHHHHH-HHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEeCCEEEEe
Q 001980 255 KNPKILLLDEATSALDAGSESIV-QEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET 317 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~ 317 (987)
.+|+++|||||++|+|+.....+ ...++.+. .|.|+|++||+.+....+|++..+++|++...
T Consensus 685 ~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 685 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred cCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 99999999999999999755544 56666664 38999999999988777888777788877543
No 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=1.5e-15 Score=171.57 Aligned_cols=181 Identities=13% Similarity=0.168 Sum_probs=115.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcE--EEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQS--QALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~--vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~ 821 (987)
.+++++ +++|++ .+ |+++||+|++|+. +|||||||||||||+++|+|+. ++|.++........++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 355666 778853 35 9999999999999 9999999999999999999983 5666665544445577
Q ss_pred ccEEEccccccc-cccHHHHhccCCCCCCHHHHHHHHH---HcCchhhHhh-------CCCcCCCcc-------CCCCCC
Q 001980 822 KIGLVQQEPALF-AASIFDNIAYGKEGATEAEVVEAAR---AANVHGFVSA-------LPNAYKTPV-------GERGVQ 883 (987)
Q Consensus 822 ~i~~VpQdp~lF-~gTIreNL~~~~~~~sd~ei~~al~---~a~l~~~i~~-------lp~gldt~v-------ge~G~~ 883 (987)
.+++++|++.++ .-|+.||+.++.. .+.+..|..+. ...+.+++.. ++..-|+.| .+.+..
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred eEEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 899999999877 5699999987753 33332222210 0011122221 122233331 233445
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-Hc-CCCeEEEEecC
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER-LM-RGRTTVLVAHR 941 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~-~~-~~~TvI~IaHR 941 (987)
|+..+ +.++|+|-.+++|+++||+|..|.+.--..+.+.|++ +. .|.+|+.|+..
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 77666 7899999999999999999999998777777777876 33 57788888854
No 213
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.53 E-value=3.9e-16 Score=162.70 Aligned_cols=144 Identities=13% Similarity=0.109 Sum_probs=101.4
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchh-cH----HH
Q 001980 122 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP--NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TI----LE 194 (987)
Q Consensus 122 ~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv----~e 194 (987)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+... ..+..++|++|++.+|.. ++ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 446799999999999999999999999999986 68999888765432 124579999999877765 55 45
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHH
Q 001980 195 NILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274 (987)
Q Consensus 195 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~ 274 (987)
|+.+.... .|-.+++ ++.++..++++||| ||+.+.
T Consensus 86 ~~~~~~~~-------------------------------------yg~~~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 86 HAEVFGNY-------------------------------------YGTSREA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EEEETTEE-------------------------------------EEEEHHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHHHhcc-------------------------------------CCCCHHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 55432110 0000111 22333446999999 999999
Q ss_pred HHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 275 SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 275 ~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
..+.+.+. ++.||+++||+++.+.. |+ +.+| .++.+++.+
T Consensus 121 ~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 121 QQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 99988765 57899999999988765 32 5666 567777754
No 214
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.52 E-value=6.9e-17 Score=178.89 Aligned_cols=149 Identities=18% Similarity=0.172 Sum_probs=110.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccC--------CCCCceEEECCccCCCCC---------------HHHHhcccEEE---c
Q 001980 774 QSQALVGASGSGKSSVIALIERFY--------DPTAGKVMIDGKDIRRLN---------------LKSLRLKIGLV---Q 827 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~--------~p~~G~I~idG~di~~i~---------------l~~lR~~i~~V---p 827 (987)
+.++|+|++|||||||++.|.|++ .|+.|+|.|||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 579999999999999999999998 789999999999998763 35678889988 7
Q ss_pred cccc-cccccHHHHhccCCCCCCHHHHHHHH-------HHcCchhhHhh--CCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 828 QEPA-LFAASIFDNIAYGKEGATEAEVVEAA-------RAANVHGFVSA--LPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 828 Qdp~-lF~gTIreNL~~~~~~~sd~ei~~al-------~~a~l~~~i~~--lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|++. .|+.++.||+.++.| ..+.+.+ +...+...+.- +.+..+.. .++|+||+||.+.+|+
T Consensus 85 q~~~~~~~~~v~E~~~l~~p----~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~-----~~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP----GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM-----NQFTIAQSQVGYADRI 155 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH----HHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH-----HHCHHHHHHHHTCSEE
T ss_pred hcCCCCCCEEEEeCCCCCCH----HHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH-----hhchHHHHHHHhCCEE
Confidence 8876 478899999977643 2222211 11222211110 01111111 1589999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 942 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl 942 (987)
++.+|+++ ||| +.+.+.|++..++.|+++++|+.
T Consensus 156 ll~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 156 LLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp EEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred EEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 99999987 888 67788888877789999999964
No 215
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.52 E-value=1.4e-14 Score=157.54 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=98.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHh-cCCCC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENIL-YGKPE 202 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~-~~~~~ 202 (987)
.+++|++++|+||||||||||++.+++... .|++. .|.+... ...+.|+..+... ..+.+++. ++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~- 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAH- 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTT-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhh-
Confidence 378999999999999999999999998654 46553 3433211 2367888766432 22322221 2211
Q ss_pred CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC--CCChHHH---HHH
Q 001980 203 ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS--ALDAGSE---SIV 277 (987)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts--~LD~~~~---~~i 277 (987)
........ .++.+ ++....+.....||+||+|++ |+++.+|+++++||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~---------~~~~l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQA---------VADGL--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHH---------HHHHE--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhh---------ccCce--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 11111111 11222 233334566788999998875 68889999999999999 9998544 677
Q ss_pred HHHHHhhh--CCCeEEEEcCCCCcc
Q 001980 278 QEALDRLM--VGRTTVVVAHRLSTI 300 (987)
Q Consensus 278 ~~~l~~~~--~~~tvi~vtH~~~~~ 300 (987)
.+.|.++. .|.|||+++|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 77787774 389999999997654
No 216
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.52 E-value=5.9e-18 Score=175.96 Aligned_cols=146 Identities=18% Similarity=0.196 Sum_probs=104.7
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhcc----CC
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAY----GK 845 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~----~~ 845 (987)
.++|+++||+|+||||||||+++|.|+++|. | ..+++|+||.+.++.+.++|+.. +.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 4689999999999999999999999999976 4 35788888888888888777631 11
Q ss_pred CC-CCHHHHHHHHHHcCchhhHhhCCC--cCCCccCCCCCCCChhHHHHHHHH-HHHccCCCEEEEeCCC----------
Q 001980 846 EG-ATEAEVVEAARAANVHGFVSALPN--AYKTPVGERGVQLSGGQKQRIAIA-RAVLKNPAILLLDEAT---------- 911 (987)
Q Consensus 846 ~~-~sd~ei~~al~~a~l~~~i~~lp~--gldt~vge~G~~LSgGQrQrlaLA-RAllr~p~ILlLDEaT---------- 911 (987)
+. ...+.+. +++..++. .+++++.+.+..+|+||+|++++| |+++.++.++++|||.
T Consensus 80 ~~~~~~~~~~---------~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~ 150 (208)
T 3c8u_A 80 PETFDFEGFQ---------RLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDV 150 (208)
T ss_dssp GGGBCHHHHH---------HHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSE
T ss_pred CchhhHHHHH---------HHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCE
Confidence 11 1222222 22333333 377888999999999999999999 9999999999999985
Q ss_pred -CCCCHHHHHHHHHHHHHHc-CCCeEEEEecCch
Q 001980 912 -SALDAESECVLQEALERLM-RGRTTVLVAHRLS 943 (987)
Q Consensus 912 -S~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ 943 (987)
.-+|...+..+++.+++.. +|.|.-.+.||..
T Consensus 151 ~i~vd~~~~~~~~R~~~R~~~~g~t~~~~~~~~~ 184 (208)
T 3c8u_A 151 SIRLEVPMADLEARLVQRWLDHGLNHDAAVARAQ 184 (208)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3356666666666665543 3455444444443
No 217
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.52 E-value=2.3e-14 Score=155.91 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=100.8
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhc-cCCCC
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIA-YGKEG 847 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~-~~~~~ 847 (987)
.+++|+.++|+|++|||||||++.+.+... .|.+ +.|.+... +..+.|++.+... ..+..++. ++. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 478999999999999999999999998664 5766 34544321 3457777766532 22323321 121 2
Q ss_pred CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHHH---HHH
Q 001980 848 ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS--ALDAESE---CVL 922 (987)
Q Consensus 848 ~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS--~LD~~te---~~I 922 (987)
..+.+..++++...+.+ ..+.....||+||+|++ |+++++|++||+||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~l~l~~-----------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADGLLIQP-----------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHHEEECC-----------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCceEEee-----------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 33444444455544332 12334557999998865 78899999999999999 9998554 667
Q ss_pred HHHHHHHc--CCCeEEEEecCchhh
Q 001980 923 QEALERLM--RGRTTVLVAHRLSTI 945 (987)
Q Consensus 923 ~~~l~~~~--~~~TvI~IaHRl~ti 945 (987)
.+.|.+.. .++|||+|+|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 77777764 389999999987654
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=1.6e-15 Score=171.18 Aligned_cols=180 Identities=12% Similarity=0.111 Sum_probs=113.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKT--VAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 176 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~--~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 176 (987)
.+++++ ++.|++ .+ |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++....+...++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 356667 888863 34 8999999999999 9999999999999999999984 3444443322223345
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCCCCCH---HHHHHHHHHHhHHHHHHhC-------CCCCccc-------ccCCCCC
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKPEATM---AEVEAAASAANAHSFITLL-------PNGYSTQ-------VGERGVQ 238 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~g~~t~-------~~~~g~~ 238 (987)
.++|++|++.++.. |+.||+.+|...... ..+.+... ....+.+... +...++. +-..+..
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred eEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 79999999988754 999999998642211 11111111 1112223222 1111221 1233446
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHh-hh-CCCeEEEEcC
Q 001980 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDR-LM-VGRTTVVVAH 295 (987)
Q Consensus 239 LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~vtH 295 (987)
|+-.. +.++++|..+++|+++|+|+..|.+.....+.+.+.+ +. .|.+++.++.
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 77666 7999999999999999999999999887888888876 54 4788888775
No 219
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.51 E-value=1.6e-16 Score=172.80 Aligned_cols=130 Identities=11% Similarity=0.011 Sum_probs=92.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCC--
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEA-- 203 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~-- 203 (987)
+++.+++|+|++|||||||++.|.+++.+. | . . ++.+.+|+|++++++.++++|+.++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 356799999999999999999999998764 2 0 0 33466669999999999999998753210
Q ss_pred -CHHHHHHHHHHHhHHHHHHhCCCCCccc------ccCCCCCCChHHHHHHHHH--HHhccCCCEEEEeCCCCCCChHH
Q 001980 204 -TMAEVEAAASAANAHSFITLLPNGYSTQ------VGERGVQLSGGQKQRIAIA--RAMLKNPKILLLDEATSALDAGS 273 (987)
Q Consensus 204 -~~~~~~~~~~~~~~~~~~~~~~~g~~t~------~~~~g~~LSgGqkqRialA--Ral~~~~~illlDEpts~LD~~~ 273 (987)
.......+.....+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+|||++++|+..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000001111233456778888886653 5667789999999999998 665 999999999999999864
No 220
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.50 E-value=1.8e-14 Score=150.69 Aligned_cols=151 Identities=14% Similarity=0.091 Sum_probs=98.7
Q ss_pred cceeeeeE-EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHH
Q 001980 761 VVFKDFNL-RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839 (987)
Q Consensus 761 ~vL~~vsl-~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIre 839 (987)
+.|+++.. -+++|+.++|+|++|||||||++.|.+ .+..+.++++..+ ..+.+.+++.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~~----------------- 65 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQM----------------- 65 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHHH-----------------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHHH-----------------
Confidence 46777765 799999999999999999999999999 4444555555432 1222222221
Q ss_pred HhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh--HHHHHHHHHHHccC-CCEEEEeCCCCCCCH
Q 001980 840 NIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG--QKQRIAIARAVLKN-PAILLLDEATSALDA 916 (987)
Q Consensus 840 NL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG--QrQrlaLARAllr~-p~ILlLDEaTS~LD~ 916 (987)
... .....+++ ++ .+. +. ..|++ |+|+++.+|+++++ |+++|+||||+.+|.
T Consensus 66 -~~~--~~~~~~~~---~~---------~~~------~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 66 -AET--RGLNPEEA---LS---------RFI------LF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp -HHT--TTCCHHHH---HH---------HEE------EE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred -HHh--cCCChHHH---hh---------cEE------EE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 100 00111221 11 110 11 12333 47899999999986 999999999999998
Q ss_pred HHH--------HHHHHHHHHHcC--CCeEEEEecCch-------------hh-hccCEEEEEeCC
Q 001980 917 ESE--------CVLQEALERLMR--GRTTVLVAHRLS-------------TI-RGVDCIGVVQDG 957 (987)
Q Consensus 917 ~te--------~~I~~~l~~~~~--~~TvI~IaHRl~-------------ti-~~~D~Iivl~~G 957 (987)
..+ ..+.+.|++..+ ++|+|+++|... .+ ..||+|++|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 543 334444655543 899999999865 33 358999999764
No 221
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.49 E-value=1.2e-15 Score=156.12 Aligned_cols=138 Identities=16% Similarity=0.055 Sum_probs=92.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCC
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGA 848 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~ 848 (987)
.+++|+.++|+|+|||||||++++|.+. |..|.|.+||.++..... -++.+++++|++. ...|+.+|+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 678999999987643221 1345788898775 4668888885321
Q ss_pred CHHHHHHHHHHcCchhhHhhCCC--cCCCc--cCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 001980 849 TEAEVVEAARAANVHGFVSALPN--AYKTP--VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924 (987)
Q Consensus 849 sd~ei~~al~~a~l~~~i~~lp~--gldt~--vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~ 924 (987)
.. .. ..+....++.... +++.. .+.....+|+|++|++++||++.++|+++ +|++..+.+.+
T Consensus 77 ---~~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GR--YA-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HH--HH-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HH--Hh-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 11 11 1111111111100 11000 02233569999999999999999999987 58876666666
Q ss_pred HHHH
Q 001980 925 ALER 928 (987)
Q Consensus 925 ~l~~ 928 (987)
.++.
T Consensus 143 ~~~~ 146 (191)
T 1zp6_A 143 QFAD 146 (191)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 6544
No 222
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.49 E-value=7.6e-15 Score=179.76 Aligned_cols=166 Identities=15% Similarity=0.146 Sum_probs=108.6
Q ss_pred ccEEEEeEEEECCCC----CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-CCceEEECCccCCCCCHH
Q 001980 743 GEIELRHVDFAYPSR----PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-TAGKVMIDGKDIRRLNLK 817 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~----~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-~~G~I~idG~di~~i~l~ 817 (987)
+.|++++. ++|-- .+..+++|+||+ ++|+.++|+|||||||||+++++.++.-+ +.| ..+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 35777764 34311 134589999999 99999999999999999999999997532 222 11111
Q ss_pred HHhcccEEEcccccccc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 818 SLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~-gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
-+.++++++| +|. -++.+|+..+ -..+|+++++ ++.+.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~------------------------------------~stf~~e~~~-~~~il 681 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG------------------------------------RSTFMVEMTE-TANIL 681 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh------------------------------------hhhhhHHHHH-HHHHH
Confidence 1244666655 332 2444443211 1236777765 44444
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEEe
Q 001980 897 AVLKNPAILLLDEATSALDAESECVL-QEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I-~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~ 962 (987)
..+.+|++|||||||+++|+.....+ +..++... .++|+|++||+.+....+|++..+.+|++...
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 56899999999999999888655544 56666553 38999999999988777888777777776543
No 223
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.48 E-value=8.5e-17 Score=178.14 Aligned_cols=155 Identities=21% Similarity=0.178 Sum_probs=108.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC--------CCCccEEEECCEeCCCCC---------------HHHHhcceEEE---c
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFY--------DPNAGHVLLDNVDIKTLQ---------------LRWLRDQIGLV---N 182 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~--------~~~~G~i~~~g~~~~~~~---------------~~~~~~~i~~v---~ 182 (987)
++++|+|+||||||||++.|+|+. .|+.|+|.+||.++...+ ...+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999987653 23456678888 6
Q ss_pred CCCCC-chhcHHHHHhcCCCCCCHHHHHHHH-HHHhHHHHHHhCCCCCcccccC-----CCCCCChHHHHHHHHHHHhcc
Q 001980 183 QEPAL-FATTILENILYGKPEATMAEVEAAA-SAANAHSFITLLPNGYSTQVGE-----RGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 183 Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~t~~~~-----~g~~LSgGqkqRialARal~~ 255 (987)
|++.+ ++.++.||..++.|. .+.... ........ ..+ .+.-+.++- ...+|||||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~~~~~~~-~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPG----PIIQTFFSHEVLCQR-YLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHH----HHHHHHHHSHHHHHH-EEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHH----HHHHHHhcCccccCe-EEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 88764 567999999887542 221111 00000000 000 011122221 112689999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcc
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~ 300 (987)
+|+++ ||| +.+.+.++++..+.|++++||+...+
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDL 192 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCG
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCH
Confidence 99987 888 67777777776789999999975433
No 224
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.46 E-value=1.3e-15 Score=155.84 Aligned_cols=151 Identities=14% Similarity=0.025 Sum_probs=94.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEA 203 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 203 (987)
.+++|++++|+||||||||||+++|+|. |+.|.|.++|.++..... .+..++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 788999999866422110 1234678888654 3458888886421
Q ss_pred CHHHHHHHHHHHhHHHHHHhCC--CCCcccc--cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHH
Q 001980 204 TMAEVEAAASAANAHSFITLLP--NGYSTQV--GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279 (987)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~--~g~~t~~--~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~ 279 (987)
... . ..+....++... .+++... +.....+|+|++||+++||++.++|+++ +|+...+.+.+
T Consensus 77 ---~~~--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GRY--A-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HHH--H-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HHH--h-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 000 0 000000000000 0111111 2334579999999999999999999876 58877777777
Q ss_pred HHHhhhCCCeEEEEcCC
Q 001980 280 ALDRLMVGRTTVVVAHR 296 (987)
Q Consensus 280 ~l~~~~~~~tvi~vtH~ 296 (987)
.+..+..-..+++.|++
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 66554321233444543
No 225
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.45 E-value=1.6e-13 Score=143.38 Aligned_cols=151 Identities=13% Similarity=0.097 Sum_probs=95.3
Q ss_pred cceeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHH
Q 001980 116 IIFRDFSI-FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILE 194 (987)
Q Consensus 116 ~~l~~i~l-~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 194 (987)
+.|+++.. .+++|++++|+||||||||||++.+++ .+..+ +.|+..+..+-...+.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~--------------------v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKK--------------------VAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSE--------------------EEEEESSCCCCHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCc--------------------EEEEECCCCCCHHHHHH
Confidence 35666654 689999999999999999999999999 33223 33333333221222222
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChH--HHHHHHHHHHhccC-CCEEEEeCCCCCCCh
Q 001980 195 NILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG--QKQRIAIARAMLKN-PKILLLDEATSALDA 271 (987)
Q Consensus 195 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgG--qkqRialARal~~~-~~illlDEpts~LD~ 271 (987)
..... ....++ ..+.+ .+ ..+|++ |+|+++.+|+++++ |+++++||||+.+|+
T Consensus 65 ~~~~~--~~~~~~------------~~~~~------~~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAETR--GLNPEE------------ALSRF------IL----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHTT--TCCHHH------------HHHHE------EE----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHhc--CCChHH------------HhhcE------EE----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 21110 011111 11111 01 133444 46789999999986 999999999999997
Q ss_pred HHH--------HHHHHHHHhhhC--CCeEEEEcCCCCc-------------cc-cCCEEEEEeCC
Q 001980 272 GSE--------SIVQEALDRLMV--GRTTVVVAHRLST-------------IR-NVDTVAVIQQG 312 (987)
Q Consensus 272 ~~~--------~~i~~~l~~~~~--~~tvi~vtH~~~~-------------~~-~~d~i~~l~~G 312 (987)
... ..+.+.|+++.+ +.|+|+++|.... +. .||+|++|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 432 334445666543 8999999998763 33 48999999754
No 226
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.42 E-value=1.6e-13 Score=145.91 Aligned_cols=146 Identities=20% Similarity=0.288 Sum_probs=91.4
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhc--cCCC-----CCceEEECCccCCC-CCHHHHhcccEEEccccccccccHHHH
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIER--FYDP-----TAGKVMIDGKDIRR-LNLKSLRLKIGLVQQEPALFAASIFDN 840 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~r--l~~p-----~~G~I~idG~di~~-i~l~~lR~~i~~VpQdp~lF~gTIreN 840 (987)
-|++|+.++|+||+|||||||++.|.+ ..+| ..|.+++++.+.-. -.+..+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 4554 57899999876311 1133455567766654 4555
Q ss_pred hccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHH-
Q 001980 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL--KNPAILLLDEATSALDAE- 917 (987)
Q Consensus 841 L~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll--r~p~ILlLDEaTS~LD~~- 917 (987)
+.+..+ .+.++..+. +.-+++++ .+|++|++||+|+.+|..
T Consensus 93 ~~~~~~-~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC-CSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec-CCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 543221 222222211 22222222 589999999999999986
Q ss_pred ------HHH-----HHHHHHHHHc--CCCeEEEEecCchhhh--------------------ccCEEEEEeCC
Q 001980 918 ------SEC-----VLQEALERLM--RGRTTVLVAHRLSTIR--------------------GVDCIGVVQDG 957 (987)
Q Consensus 918 ------te~-----~I~~~l~~~~--~~~TvI~IaHRl~ti~--------------------~~D~Iivl~~G 957 (987)
+++ .+.+.|.+.. .++|||+++|-..... .||.|++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 432 2333344332 3899999999654332 47999999875
No 227
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.42 E-value=1e-15 Score=170.54 Aligned_cols=172 Identities=15% Similarity=0.165 Sum_probs=119.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC----HHHHh
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN----LKSLR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----l~~lR 820 (987)
|+++|++++|. ...+|+++||++++|+.++|+|++|||||||+++|.|++.|++|+|.|.|.|+.... ....|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 44556667773 235899999999999999999999999999999999999999999999999986533 23457
Q ss_pred cccEEEcccccccc----------cc---HHHHhc--------------cCCCCCCHHHHHHHHHHcC------------
Q 001980 821 LKIGLVQQEPALFA----------AS---IFDNIA--------------YGKEGATEAEVVEAARAAN------------ 861 (987)
Q Consensus 821 ~~i~~VpQdp~lF~----------gT---IreNL~--------------~~~~~~sd~ei~~al~~a~------------ 861 (987)
.++++++|++.+|. || +++.+. .|.. .++..+. +.+.
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~-~~~~~v~---~~~d~vl~v~d~~~~~ 182 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVG-QSETAVA---DLTDFFLVLMLPGAGD 182 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSS-SCHHHHH---TTSSEEEEEECSCC--
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCC-cchhhHH---hhCCEEEEEEcCCCcc
Confidence 88999999998884 22 222220 0100 0111111 1111
Q ss_pred ----chhhHhhCCC-----cCCCccCCCCCCCChhHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHH
Q 001980 862 ----VHGFVSALPN-----AYKTPVGERGVQLSGGQKQRIAIARAVLK------NPAILLLDEATSALDAESECVLQEAL 926 (987)
Q Consensus 862 ----l~~~i~~lp~-----gldt~vge~G~~LSgGQrQrlaLARAllr------~p~ILlLDEaTS~LD~~te~~I~~~l 926 (987)
+...+...|. +.|.. ....+|+|++|+++.|++++. +|+++. ||++|.+.-..+.+.|
T Consensus 183 ~~~~i~~~i~~~~~ivvlNK~Dl~---~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I 255 (337)
T 2qm8_A 183 ELQGIKKGIFELADMIAVNKADDG---DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRI 255 (337)
T ss_dssp ----CCTTHHHHCSEEEEECCSTT---CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHH
T ss_pred cHHHHHHHHhccccEEEEEchhcc---CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHH
Confidence 0001111111 11210 113479999999999999998 688887 9999999999999998
Q ss_pred HHHc
Q 001980 927 ERLM 930 (987)
Q Consensus 927 ~~~~ 930 (987)
.+..
T Consensus 256 ~~~~ 259 (337)
T 2qm8_A 256 EDHR 259 (337)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 228
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.40 E-value=8.3e-14 Score=158.97 Aligned_cols=158 Identities=22% Similarity=0.316 Sum_probs=104.6
Q ss_pred eeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC----HHH--HhcccEEEccccccc-ccc
Q 001980 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN----LKS--LRLKIGLVQQEPALF-AAS 836 (987)
Q Consensus 764 ~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----l~~--lR~~i~~VpQdp~lF-~gT 836 (987)
+++||++++|+.++|||+||||||||+++|.|++.|++|+|.++|.|+.... +.. .|+++++|+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5788899999999999999999999999999999999999999988876532 223 478899999998755 568
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC-C-CEEEEeCCCCCC
Q 001980 837 IFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN-P-AILLLDEATSAL 914 (987)
Q Consensus 837 IreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~-p-~ILlLDEaTS~L 914 (987)
+++|+.++.. .+.+-.+-...+.++. -.++-.--+|++.++|++... | .+|+..+||++.
T Consensus 364 V~e~l~~a~~-------------~~~DvVLIDTaGrl~~-----~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 364 IFDAIQAAKA-------------RNIDVLIADTAGRLQN-----KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHH-------------TTCSEEEECCCCSCCC-----HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHh-------------cCCCEEEEeCCCccch-----hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 9999975421 1111111111111111 011222335788899987643 5 355555588876
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEEecCchh
Q 001980 915 DAESECVLQEALERLMRGRTTVLVAHRLST 944 (987)
Q Consensus 915 D~~te~~I~~~l~~~~~~~TvI~IaHRl~t 944 (987)
|.... .+.+.+. -+.|.+++|| ++.
T Consensus 426 ~al~~---ak~f~~~-~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 426 NAVSQ---AKLFHEA-VGLTGITLTK-LDG 450 (503)
T ss_dssp HHHHH---HHHHHHH-TCCSEEEEEC-GGG
T ss_pred HHHHH---HHHHHhh-cCCCEEEEEc-CCC
Confidence 54422 2223322 3689999999 443
No 229
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.38 E-value=7.9e-16 Score=159.84 Aligned_cols=134 Identities=18% Similarity=0.228 Sum_probs=93.2
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhc----CC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILY----GK 200 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~----~~ 200 (987)
.++|++++|+||||||||||+++|+|+++|+ | ..+++++|+...++.+..+|+.. +.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 4789999999999999999999999999875 4 15778888877777766666531 11
Q ss_pred CCC-CHHHHHHHHHHHhHHHHHHhCCCC--CcccccCCCCCCChHHHHHHHHH-HHhccCCCEEEEeCCCCCCChHHHHH
Q 001980 201 PEA-TMAEVEAAASAANAHSFITLLPNG--YSTQVGERGVQLSGGQKQRIAIA-RAMLKNPKILLLDEATSALDAGSESI 276 (987)
Q Consensus 201 ~~~-~~~~~~~~~~~~~~~~~~~~~~~g--~~t~~~~~g~~LSgGqkqRialA-Ral~~~~~illlDEpts~LD~~~~~~ 276 (987)
+.. ....+ .+.+..++.| +.+.+.+++..+|+||+||+++| |+++.++.++++|||...
T Consensus 80 ~~~~~~~~~---------~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~-------- 142 (208)
T 3c8u_A 80 PETFDFEGF---------QRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWR-------- 142 (208)
T ss_dssp GGGBCHHHH---------HHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGG--------
T ss_pred CchhhHHHH---------HHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhH--------
Confidence 111 11111 2223333334 56677889999999999999998 888888888888888410
Q ss_pred HHHHHHhhhCCCeEEEEcCCCCc
Q 001980 277 VQEALDRLMVGRTTVVVAHRLST 299 (987)
Q Consensus 277 i~~~l~~~~~~~tvi~vtH~~~~ 299 (987)
.+.+. -..+|++.+..+.
T Consensus 143 ---~l~~~--~d~~i~vd~~~~~ 160 (208)
T 3c8u_A 143 ---DLTAI--WDVSIRLEVPMAD 160 (208)
T ss_dssp ---GGGGT--CSEEEEECCCHHH
T ss_pred ---HHHHh--cCEEEEEeCCHHH
Confidence 11111 2467888887765
No 230
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.38 E-value=3.1e-13 Score=143.63 Aligned_cols=146 Identities=18% Similarity=0.251 Sum_probs=86.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc--CCCC-----CccEEEECCEeCCC-CCHHHHhcceEEEcCCCCCchhcHHHH
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIER--FYDP-----NAGHVLLDNVDIKT-LQLRWLRDQIGLVNQEPALFATTILEN 195 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g--~~~~-----~~G~i~~~g~~~~~-~~~~~~~~~i~~v~Q~~~l~~~tv~en 195 (987)
-+++|++++|+||||||||||++.|++ ..+| ..|.+++++.+... .....+.+++++.+| .+.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~-------~~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS-------DVLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH-------HHhhC
Confidence 478999999999999999999999999 5655 57788888754211 111223334444433 24455
Q ss_pred HhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCChH-
Q 001980 196 ILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML--KNPKILLLDEATSALDAG- 272 (987)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~--~~~~illlDEpts~LD~~- 272 (987)
+.+..+. +.++..+. +.-++.++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~~-~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARAF-NTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEECC-SHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEecC-CHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 5443221 11111111 11111222 589999999999999985
Q ss_pred ------H-----HHHHHHHHHhhh--CCCeEEEEcCCCCc-------------------cc-cCCEEEEEeCC
Q 001980 273 ------S-----ESIVQEALDRLM--VGRTTVVVAHRLST-------------------IR-NVDTVAVIQQG 312 (987)
Q Consensus 273 ------~-----~~~i~~~l~~~~--~~~tvi~vtH~~~~-------------------~~-~~d~i~~l~~G 312 (987)
. ...+...|.++. .+.|||+++|.... +. .||++++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 233444454443 38999999996543 22 47999999865
No 231
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.37 E-value=2.3e-13 Score=155.42 Aligned_cols=149 Identities=19% Similarity=0.289 Sum_probs=102.1
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHH--HhcceEEEcCCCCCch-hc
Q 001980 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ----LRW--LRDQIGLVNQEPALFA-TT 191 (987)
Q Consensus 119 ~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~----~~~--~~~~i~~v~Q~~~l~~-~t 191 (987)
+++||++++|++++|+|+||||||||++.|+|++.|++|+|.++|.+..... ... .|.+|+|++|++.++. .|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 6889999999999999999999999999999999999999999887764321 122 3668999999987764 49
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccc-cCCCC-----CCChHHHHHHHHHHHhcc-CC-CEEEEe
Q 001980 192 ILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV-GERGV-----QLSGGQKQRIAIARAMLK-NP-KILLLD 263 (987)
Q Consensus 192 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~-~~~g~-----~LSgGqkqRialARal~~-~~-~illlD 263 (987)
+++|+.++... |++..+ ..-|. +|-.--+|++.++|++.. .| .++|..
T Consensus 364 V~e~l~~a~~~------------------------~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 364 IFDAIQAAKAR------------------------NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHT------------------------TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHhc------------------------CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 99999764210 111111 11110 122233578899998754 45 366666
Q ss_pred CCCCCCChHHHHHHHHHHHhhhCCCeEEEEcC
Q 001980 264 EATSALDAGSESIVQEALDRLMVGRTTVVVAH 295 (987)
Q Consensus 264 Epts~LD~~~~~~i~~~l~~~~~~~tvi~vtH 295 (987)
+|+++.|.... .+.+.+ ..+.|.|++||
T Consensus 420 DattGq~al~~---ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAVSQ---AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHHHH---HHHHHH-HTCCSEEEEEC
T ss_pred cCcccHHHHHH---HHHHHh-hcCCCEEEEEc
Confidence 68877655421 111221 13789999999
No 232
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.33 E-value=1.8e-16 Score=162.02 Aligned_cols=165 Identities=17% Similarity=0.100 Sum_probs=108.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccc-cccHHHHhccCCCCCCHH
Q 001980 773 GQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF-AASIFDNIAYGKEGATEA 851 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF-~gTIreNL~~~~~~~sd~ 851 (987)
|+.++|+|+|||||||++++|.+ |.+|.+.+||.++... ..+++++|++..+ ..|+++|+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68899999999999999999987 5689999999766432 2467788876433 45788887421
Q ss_pred HHHHHHHHcCchhhHhhCCCcCCCccCC----CCCCC--ChhHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHH
Q 001980 852 EVVEAARAANVHGFVSALPNAYKTPVGE----RGVQL--SGGQKQRIAIAR------AVLKNPAILLLDEATSALDAESE 919 (987)
Q Consensus 852 ei~~al~~a~l~~~i~~lp~gldt~vge----~G~~L--SgGQrQrlaLAR------Allr~p~ILlLDEaTS~LD~~te 919 (987)
....+ ..+.. .+ +|...+. .-..+ |+|++|++.++. +++++++...+|+ ++|+...
T Consensus 66 -~~~~~-~~~~~-~i------ld~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 66 -TVNFL-LAQND-VV------LDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp -HHHHH-HTTCE-EE------EESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred -HHHHH-hcCCc-EE------EeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 11111 11110 00 1110010 00124 888888888888 8888888888884 7999887
Q ss_pred HHHHHHHHHHc-CCCeEEEEecC-chhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 920 CVLQEALERLM-RGRTTVLVAHR-LSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 920 ~~I~~~l~~~~-~~~TvI~IaHR-l~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
.. ++.+++.. .+.|+|..+|. ++++.. ||+|+ ++|+++..|+++-|
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 77 77777664 35799999999 988866 79998 99999999998766
No 233
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.32 E-value=3.2e-15 Score=174.74 Aligned_cols=171 Identities=18% Similarity=0.179 Sum_probs=119.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEcccccccc--ccHH
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA--ASIF 838 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~--gTIr 838 (987)
.+++++++.+++|+.++|+|+|||||||++++|.|+++|++|.|+|+|.+--.++. +..+++++|++. .. .|++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 47899999999999999999999999999999999999999999999876333221 456778888766 33 2666
Q ss_pred HHhccC---C------CCCCHHHHHHHHHHcCc-------------hhhHhhC---CCcCCCccC-------CCCCCCCh
Q 001980 839 DNIAYG---K------EGATEAEVVEAARAANV-------------HGFVSAL---PNAYKTPVG-------ERGVQLSG 886 (987)
Q Consensus 839 eNL~~~---~------~~~sd~ei~~al~~a~l-------------~~~i~~l---p~gldt~vg-------e~G~~LSg 886 (987)
+++... + .+..+.|...+++.++. .+.+.++ |.|+...+. .....+|+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 665321 1 24566666666665431 1222222 222222111 12335799
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEE--EecCchhhhc
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVL--VAHRLSTIRG 947 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~--IaHRl~ti~~ 947 (987)
|||||.|+|. + | |+++|+++...+++.|.++. .++|++. +||+++.+..
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 9999988762 1 7 99999988877777776654 3788875 8999998754
No 234
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.32 E-value=4.2e-15 Score=151.86 Aligned_cols=161 Identities=14% Similarity=0.078 Sum_probs=106.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCc-hhcHHHHHhcCCCCCCHH
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF-ATTILENILYGKPEATMA 206 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~ 206 (987)
|++++|+||||||||||++.|++ |.+|.+.++|.++... ..+++++|.+... ..++++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68999999999999999999997 7789999988554221 2457777765333 337777765310
Q ss_pred HHHHHHHHHhHHHHHHhCCCCCcccccC--------CCCCC--ChHHHHHHHHHH------HhccCCCEEEEeCCCCCCC
Q 001980 207 EVEAAASAANAHSFITLLPNGYSTQVGE--------RGVQL--SGGQKQRIAIAR------AMLKNPKILLLDEATSALD 270 (987)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~g~~t~~~~--------~g~~L--SgGqkqRialAR------al~~~~~illlDEpts~LD 270 (987)
.. ... .|....+.. ....+ |+|++|++.++. +++.+|+...+|+ ++|
T Consensus 67 ------~~-----~~~---~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld 129 (189)
T 2bdt_A 67 ------VN-----FLL---AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMG 129 (189)
T ss_dssp ------HH-----HHH---TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------C
T ss_pred ------HH-----HHh---cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCC
Confidence 00 000 011111110 00124 888888888887 8888888877884 799
Q ss_pred hHHHHHHHHHHHhhh-CCCeEEEEcCC-CCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 271 AGSESIVQEALDRLM-VGRTTVVVAHR-LSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 271 ~~~~~~i~~~l~~~~-~~~tvi~vtH~-~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
+...+. ++.+..+. .+.++|.+||. ++.+.. ||+|+ ++|+++.+|+++-+
T Consensus 130 ~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 130 ERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 987777 77777764 36899999998 888876 79998 99999999987665
No 235
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.31 E-value=4.9e-14 Score=150.34 Aligned_cols=137 Identities=19% Similarity=0.233 Sum_probs=96.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHH---cCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCch-hcHHHHHhcC---
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIE---RFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG--- 199 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~---g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~--- 199 (987)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+.. ..+...+.+++|++.+++ .++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988765432 123345666778877665 4899988641
Q ss_pred ----------CCCCCHHHHHHHHHHHhHHHHHHhC-CCC------------CcccccCCCCCCChHHHHHHHHHHHh-cc
Q 001980 200 ----------KPEATMAEVEAAASAANAHSFITLL-PNG------------YSTQVGERGVQLSGGQKQRIAIARAM-LK 255 (987)
Q Consensus 200 ----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~g------------~~t~~~~~g~~LSgGqkqRialARal-~~ 255 (987)
.+ ....+... +..+ ..+ ..-...+....||| |+ ||+ +.
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~----------l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEA----------LDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHH----------HHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred cCCCeEEEECCC-CCHHHHHH----------HHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence 11 11111111 1111 111 11112345567999 66 888 99
Q ss_pred CCCEEEEe----CCCCCCChHHHHHHHHHHHhhh
Q 001980 256 NPKILLLD----EATSALDAGSESIVQEALDRLM 285 (987)
Q Consensus 256 ~~~illlD----Epts~LD~~~~~~i~~~l~~~~ 285 (987)
+|++++|| |||++||+.+++.+.+.+.++.
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 99999999 9999999999999999887764
No 236
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.31 E-value=1e-13 Score=136.38 Aligned_cols=86 Identities=10% Similarity=0.033 Sum_probs=71.8
Q ss_pred EeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEc
Q 001980 748 RHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQ 827 (987)
Q Consensus 748 ~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~Vp 827 (987)
+|++++|. ...+++++||+|++|+.++|+||||||||||+++|.|++ |++|+|.++|.++.+. ...+ + +++
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~-~--~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA-G--KMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET-T--EEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC-C--cce
Confidence 44566663 235899999999999999999999999999999999999 9999999999988531 1112 2 799
Q ss_pred cccccccccHHHHhc
Q 001980 828 QEPALFAASIFDNIA 842 (987)
Q Consensus 828 Qdp~lF~gTIreNL~ 842 (987)
|++.+|.-|+.+|+.
T Consensus 82 q~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 82 YHFDLYRLADPEELE 96 (158)
T ss_dssp EEEECTTCSCTTHHH
T ss_pred eccccccCCcHHHHH
Confidence 999999889999984
No 237
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.30 E-value=4.2e-12 Score=143.71 Aligned_cols=74 Identities=28% Similarity=0.373 Sum_probs=67.4
Q ss_pred CCCChhHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEE
Q 001980 882 VQLSGGQKQRI------AIARAVLKN-PAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVV 954 (987)
Q Consensus 882 ~~LSgGQrQrl------aLARAllr~-p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl 954 (987)
..|||||+||+ |+|||+..+ |++|||||||++||+.+...+.+.|.+..+++|||+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 46999999987 678999999 99999999999999999999999999865567999999999866678999999
Q ss_pred e
Q 001980 955 Q 955 (987)
Q Consensus 955 ~ 955 (987)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 238
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.30 E-value=7.2e-15 Score=167.22 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=100.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC----CCHHHHh
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR----LNLKSLR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~l~~lR 820 (987)
++++++++.|. ...+|+++ + .++|+.++|+|||||||||++++|.+++.|++|+|.++|.++.. ++...++
T Consensus 144 ~~l~~Lg~~~~---~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 144 LDLHSLGMTAH---NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCGGGSCCCHH---HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCHHHcCCCHH---HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 45666666663 23478888 5 38999999999999999999999999999999999999988742 1112345
Q ss_pred cccEEEc---------cccccc--c-----ccHHHHhccCC---------CCCCHHHHHHHHHHcCchhhHhhCCCcCCC
Q 001980 821 LKIGLVQ---------QEPALF--A-----ASIFDNIAYGK---------EGATEAEVVEAARAANVHGFVSALPNAYKT 875 (987)
Q Consensus 821 ~~i~~Vp---------Qdp~lF--~-----gTIreNL~~~~---------~~~sd~ei~~al~~a~l~~~i~~lp~gldt 875 (987)
+++++.+ |+|.++ . .|+++|+..+. ...+..+..+.+...++..+.
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--------- 289 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--------- 289 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH---------
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH---------
Confidence 5565544 998653 2 37888886431 111223444456666654432
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 001980 876 PVGERGVQLSGGQKQRIAIARAVLKNPAILL 906 (987)
Q Consensus 876 ~vge~G~~LSgGQrQrlaLARAllr~p~ILl 906 (987)
...+|||||+|| |||+++.+|++..
T Consensus 290 ----~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 ----ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp ----HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred ----HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 123699999999 9999999999976
No 239
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.30 E-value=3.3e-12 Score=144.59 Aligned_cols=74 Identities=24% Similarity=0.382 Sum_probs=67.3
Q ss_pred CCCChHHHHHH------HHHHHhccC-CCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEE
Q 001980 237 VQLSGGQKQRI------AIARAMLKN-PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVI 309 (987)
Q Consensus 237 ~~LSgGqkqRi------alARal~~~-~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l 309 (987)
..||||||||+ ++|||+..+ |+++||||||++||+..+..+.+.|.++..+.+||++||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999988 668999999 99999999999999999999999998876567999999999865668999999
Q ss_pred e
Q 001980 310 Q 310 (987)
Q Consensus 310 ~ 310 (987)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 240
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.29 E-value=2.5e-12 Score=141.83 Aligned_cols=165 Identities=16% Similarity=0.120 Sum_probs=108.1
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH----HHhcc--cEEEcccccccc-ccHHHHhc
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK----SLRLK--IGLVQQEPALFA-ASIFDNIA 842 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~----~lR~~--i~~VpQdp~lF~-gTIreNL~ 842 (987)
.++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+...... .++++ +.+++|++.++. .|+++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999876633 34444 459999987764 58899986
Q ss_pred cCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 001980 843 YGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922 (987)
Q Consensus 843 ~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I 922 (987)
++. + .+.+-.+ +||. |-.. .-..=-+++-.++|++..++++++||.+|. .|....
T Consensus 206 ~~~------------~-~~~d~vl------iDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~--- 260 (328)
T 3e70_C 206 HAK------------A-RGIDVVL------IDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQ--- 260 (328)
T ss_dssp HHH------------H-HTCSEEE------EEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHH---
T ss_pred HHH------------h-ccchhhH------Hhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHH---
Confidence 431 0 0110000 1111 1000 001123455569999999999999996665 322211
Q ss_pred HHHHHHHcCCCeEEEEecCchhh---------h-ccCEEEEEeCCEEE
Q 001980 923 QEALERLMRGRTTVLVAHRLSTI---------R-GVDCIGVVQDGRIV 960 (987)
Q Consensus 923 ~~~l~~~~~~~TvI~IaHRl~ti---------~-~~D~Iivl~~G~iv 960 (987)
.+.+.+ ..+.|+|++||--.+. . .--.|..+..|+-+
T Consensus 261 ~~~~~~-~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 261 ARQFNE-AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHH-HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHH-hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 122222 1378999999943221 1 12468888888754
No 241
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=1.9e-12 Score=145.80 Aligned_cols=137 Identities=18% Similarity=0.278 Sum_probs=80.9
Q ss_pred EEEEcCCCCChHHHHHHHhc-cCCCCCceEEECCccCCCCCHHHHhcccEEEccccccc-cccHHHHhccCCCCCCHHHH
Q 001980 776 QALVGASGSGKSSVIALIER-FYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF-AASIFDNIAYGKEGATEAEV 853 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~r-l~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF-~gTIreNL~~~~~~~sd~ei 853 (987)
+.|+||+|+||||++++|.+ ++.|..|.|.++|.++..... -+..+++++|++++. +.+- .+ ......+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~ 109 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MG--NNDRIVI 109 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cC--CcchHHH
Confidence 99999999999999999999 899999999999988764332 267899999998753 2110 01 0112233
Q ss_pred HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCC
Q 001980 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR 933 (987)
Q Consensus 854 ~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~ 933 (987)
.+.++.+.. . .+++..+ .||| +..+|+++|||||++ ||.++...+.+.+++..+++
T Consensus 110 ~~~i~~~~~-----~--~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 110 QELLKEVAQ-----M--EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp HHHHHHHTT-----T--TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTE
T ss_pred HHHHHHHHH-----h--ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCC
Confidence 333332211 0 1111111 4666 788999999999999 99999999999999877788
Q ss_pred eEEEEecCchhh
Q 001980 934 TTVLVAHRLSTI 945 (987)
Q Consensus 934 TvI~IaHRl~ti 945 (987)
++|++||+++.+
T Consensus 166 ~~Il~t~~~~~l 177 (354)
T 1sxj_E 166 RLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEESCSCSS
T ss_pred EEEEEeCCHHHH
Confidence 999999998654
No 242
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.28 E-value=6e-14 Score=156.18 Aligned_cols=177 Identities=13% Similarity=0.118 Sum_probs=114.8
Q ss_pred EEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHHhcc
Q 001980 102 FKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ----LRWLRDQ 177 (987)
Q Consensus 102 ~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~~~~ 177 (987)
++|+++.|+. ..+|+++||++++|++++|+|+||||||||++.|+|++.|++|+|.+.|.++.... ....+.+
T Consensus 32 ~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 32 SRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp CSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred eCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 3455556642 34899999999999999999999999999999999999999999999998875432 1234567
Q ss_pred eEEEcCCCCCch----------h---cHHHHHh-c---CCC---------CCCHHHHHHHHH-------------HHhHH
Q 001980 178 IGLVNQEPALFA----------T---TILENIL-Y---GKP---------EATMAEVEAAAS-------------AANAH 218 (987)
Q Consensus 178 i~~v~Q~~~l~~----------~---tv~eni~-~---~~~---------~~~~~~~~~~~~-------------~~~~~ 218 (987)
++|++|++.+|. | +++|.+. + +.+ ......+.+.+. ...+.
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 999999998874 2 2333321 0 000 000011100000 00000
Q ss_pred HHHHhCCCCC-cccccC-CCCCCChHHHHHHHHHHHhcc------CCCEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 001980 219 SFITLLPNGY-STQVGE-RGVQLSGGQKQRIAIARAMLK------NPKILLLDEATSALDAGSESIVQEALDRLM 285 (987)
Q Consensus 219 ~~~~~~~~g~-~t~~~~-~g~~LSgGqkqRialARal~~------~~~illlDEpts~LD~~~~~~i~~~l~~~~ 285 (987)
+.+...|.-+ -+..+. ....+|+|++|++..|++++. +|+++. +|++|......+++.|.++.
T Consensus 189 ~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 189 KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0000111100 011121 123579999999999999987 688876 99999999999999987753
No 243
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.28 E-value=6.8e-14 Score=137.64 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=70.5
Q ss_pred EeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEc
Q 001980 103 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVN 182 (987)
Q Consensus 103 ~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 182 (987)
+|++++|+. ..+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++... ...+ .|++
T Consensus 11 ~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 355666752 35899999999999999999999999999999999999 9999999999876421 0111 2899
Q ss_pred CCCCCchhcHHHHHhc
Q 001980 183 QEPALFATTILENILY 198 (987)
Q Consensus 183 Q~~~l~~~tv~eni~~ 198 (987)
|++.++.-|+.||+.+
T Consensus 82 q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 82 YHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEECTTCSCTTHHHH
T ss_pred eccccccCCcHHHHHH
Confidence 9998886699999853
No 244
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.28 E-value=1.9e-12 Score=143.41 Aligned_cols=121 Identities=13% Similarity=0.092 Sum_probs=81.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEEC-CEeCCCCCHHHHhcceEEEcCCCCCchh-cHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-PNAGHVLLD-NVDIKTLQLRWLRDQIGLVNQEPALFAT-TIL 193 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-~~~G~i~~~-g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~ 193 (987)
-++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.++ |.+.. ...+..+++++|++++++. +++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46677764 4899999999999999999999999999 999999987 65432 1234579999999988865 999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 194 ENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 194 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
++-+. ....+++... ..++++.+ |+....+....+|| ||+||++||+++
T Consensus 280 e~~l~---~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGLW---HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCCC---CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhhc---CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 96332 2233333221 12333433 55555667778999 999999999975
No 245
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.28 E-value=2.5e-12 Score=145.48 Aligned_cols=147 Identities=18% Similarity=0.257 Sum_probs=95.7
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHH--HhccCCCCC-----ceEEECCccC-CCCCHHHHhcccEEEccccccccccHHHH
Q 001980 769 RIRAGQSQALVGASGSGKSSVIAL--IERFYDPTA-----GKVMIDGKDI-RRLNLKSLRLKIGLVQQEPALFAASIFDN 840 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~l--L~rl~~p~~-----G~I~idG~di-~~i~l~~lR~~i~~VpQdp~lF~gTIreN 840 (987)
-|++|+.++|+||+|||||||++. +....+++. +.|+||+.+. +...+..+++++++.|| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 588999999999999999999994 456666543 4899999763 22223345566777665 56677
Q ss_pred hccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH
Q 001980 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL--KNPAILLLDEATSALDAES 918 (987)
Q Consensus 841 L~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll--r~p~ILlLDEaTS~LD~~t 918 (987)
+.+..+ .+-+ .+.+++.-+++++ .+|++|++||+|+.+|.+.
T Consensus 247 i~~~~~-~~~~-----------------------------------~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARA-YNAD-----------------------------------HQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEEC-CSHH-----------------------------------HHHHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEecc-CChH-----------------------------------HHHHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 755432 1111 1223333333333 4699999999999999764
Q ss_pred H------------HHHHHHHHHHc--CCCeEEEEecCch-------------------hhhc-cCEEEEEeCCE
Q 001980 919 E------------CVLQEALERLM--RGRTTVLVAHRLS-------------------TIRG-VDCIGVVQDGR 958 (987)
Q Consensus 919 e------------~~I~~~l~~~~--~~~TvI~IaHRl~-------------------ti~~-~D~Iivl~~G~ 958 (987)
. ..+.+.|+++. .++|||+|+|-.. .+.+ +|.+++|+.|+
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 4 45566666554 3899999999832 1233 69999998763
No 246
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.26 E-value=5.3e-15 Score=168.36 Aligned_cols=129 Identities=19% Similarity=0.151 Sum_probs=87.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHHHhcceEEEc---------C
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL----QLRWLRDQIGLVN---------Q 183 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~~~~i~~v~---------Q 183 (987)
+|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.+.++... +...++.++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45555 3 378999999999999999999999999999999999988776421 1112344566655 9
Q ss_pred CCCCc--h-----hcHHHHHhcCCC---------CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 184 EPALF--A-----TTILENILYGKP---------EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 184 ~~~l~--~-----~tv~eni~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
+|.++ . .|+++|+.++.. ..+..+....+... |+.... ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~l-----------gl~~~~--~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDM-----------GIEPFL--ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHH-----------TCCHHH--HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHc-----------CCcHHH--HHHHHHHHHHHH-
Confidence 99763 2 489999875311 11112222222211 222211 345799999999
Q ss_pred HHHHHhccCCCEEEE
Q 001980 248 AIARAMLKNPKILLL 262 (987)
Q Consensus 248 alARal~~~~~illl 262 (987)
|||+|+.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999999763
No 247
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.25 E-value=8.5e-12 Score=137.56 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=96.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH----HHhc--ceEEEcCCCCCchh-cHHHHH
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR----WLRD--QIGLVNQEPALFAT-TILENI 196 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~----~~~~--~i~~v~Q~~~l~~~-tv~eni 196 (987)
..++|++++|+||||||||||++.|+|+++|++|+|.+.|.|+...... .+++ .+.|++|++.+++. +++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999998765532 2333 46699999988865 999999
Q ss_pred hcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCC-C-CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHH
Q 001980 197 LYGKPEATMAEVEAAASAANAHSFITLLPNGYST-QVGERGV-Q-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 273 (987)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~-~-LSgGqkqRialARal~~~~~illlDEpts~LD~~~ 273 (987)
.++.. . +.+. .+...|. . -.-=.++--.++|++..++++++||.++. .
T Consensus 205 ~~~~~-------------~-----------~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~---- 255 (328)
T 3e70_C 205 QHAKA-------------R-----------GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-N---- 255 (328)
T ss_dssp HHHHH-------------H-----------TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-T----
T ss_pred HHHHh-------------c-----------cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-H----
Confidence 75310 0 1110 0111110 0 01112233348999998888888885554 2
Q ss_pred HHHHHHHHHhhh--CCCeEEEEcCC
Q 001980 274 ESIVQEALDRLM--VGRTTVVVAHR 296 (987)
Q Consensus 274 ~~~i~~~l~~~~--~~~tvi~vtH~ 296 (987)
.+.+.++.+. .+.|.|++||-
T Consensus 256 --~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 256 --AIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --HHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHhcCCCEEEEeCc
Confidence 3333333333 37899999994
No 248
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.25 E-value=7.9e-12 Score=138.44 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=79.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-CCCceEEEC-CccCCCCCHHHHhcccEEEccccccccc-cHH
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-PTAGKVMID-GKDIRRLNLKSLRLKIGLVQQEPALFAA-SIF 838 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-p~~G~I~id-G~di~~i~l~~lR~~i~~VpQdp~lF~g-TIr 838 (987)
-++++++. .+|++++|+|+||||||||+++|.|+.. |..|+|.++ |.+.. ...+..++++||++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 36777764 4899999999999999999999999999 999999997 76642 2346789999999988754 899
Q ss_pred HHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 839 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 839 eNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
++-. ...+.+++.+ .+.++...+ |+.........++| ||+||++||++++
T Consensus 280 e~~l---~~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGL---WHLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCC---CCCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhh---cCCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 8632 2345555432 222333322 22222233345799 9999999999863
No 249
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.24 E-value=3.4e-12 Score=144.35 Aligned_cols=146 Identities=17% Similarity=0.227 Sum_probs=91.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHH--HHHcCCCCCcc-----EEEECCEeCC-CCCHHHHhcceEEEcCCCCCchhcHHHH
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVS--LIERFYDPNAG-----HVLLDNVDIK-TLQLRWLRDQIGLVNQEPALFATTILEN 195 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~--~l~g~~~~~~G-----~i~~~g~~~~-~~~~~~~~~~i~~v~Q~~~l~~~tv~en 195 (987)
-|++|++++|+||||||||||++ ++.+..+++.| .+++++.+.. ......+.+++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 47899999999999999999999 44677776444 7888876521 1112223344554433 67777
Q ss_pred HhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCCCCCCChHH
Q 001980 196 ILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM--LKNPKILLLDEATSALDAGS 273 (987)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal--~~~~~illlDEpts~LD~~~ 273 (987)
+.+..+.. .+.. .+.+.-++.+ -.+|+++++|||++.+|+..
T Consensus 247 i~~~~~~~-~~~~-----------------------------------~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAYN-ADHQ-----------------------------------LRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECCS-HHHH-----------------------------------HHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccCC-hHHH-----------------------------------HHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 76654321 1111 1111111111 24799999999999999753
Q ss_pred H------------HHHHHHHHhhh--CCCeEEEEcCCCC-------------------cccc-CCEEEEEeCC
Q 001980 274 E------------SIVQEALDRLM--VGRTTVVVAHRLS-------------------TIRN-VDTVAVIQQG 312 (987)
Q Consensus 274 ~------------~~i~~~l~~~~--~~~tvi~vtH~~~-------------------~~~~-~d~i~~l~~G 312 (987)
. ..+.+.|+++. .+.|||+|+|... .+.+ +|.+++|+++
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 2 45666666664 3899999999832 1233 6888888765
No 250
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.24 E-value=9.2e-12 Score=121.43 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=71.8
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc--eEEECCccCCCCCHHHHhcccEEEccccccccccHHH
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG--KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G--~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIre 839 (987)
+|+++ +|+.++|+|++|||||||++++.+.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 57777 8999999999999999999999999987 57 666666543221
Q ss_pred HhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 001980 840 NIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919 (987)
Q Consensus 840 NL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te 919 (987)
+++.+|++|+||||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 2367899999999998 665558
Q ss_pred HHHHHHHHHHc-CCCe-EEEEecCc
Q 001980 920 CVLQEALERLM-RGRT-TVLVAHRL 942 (987)
Q Consensus 920 ~~I~~~l~~~~-~~~T-vI~IaHRl 942 (987)
+.+.+.+.+.. +++| +|+++|+.
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCC
Confidence 88888887765 4677 77777753
No 251
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.23 E-value=2.5e-13 Score=144.81 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=96.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHh---ccCCCCCceEEECCccCCCCCHHHHhcccEEEcccccccc-ccHHHHhcc----
Q 001980 772 AGQSQALVGASGSGKSSVIALIE---RFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAY---- 843 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~---rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~-gTIreNL~~---- 843 (987)
++++++|+|++||||||++++|. |+..|+.|+|.++|.+.. ..++..+..++|++.++. .++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999 999999999999887642 134556677788876554 478888743
Q ss_pred ---------CCCCCCHHHHHHHHHHcCch--hhHhhCCC-c-CCCccCCCCCCCChhHHHHHHHHHHH-ccCCCEEEEe-
Q 001980 844 ---------GKEGATEAEVVEAARAANVH--GFVSALPN-A-YKTPVGERGVQLSGGQKQRIAIARAV-LKNPAILLLD- 908 (987)
Q Consensus 844 ---------~~~~~sd~ei~~al~~a~l~--~~i~~lp~-g-ldt~vge~G~~LSgGQrQrlaLARAl-lr~p~ILlLD- 908 (987)
+.+ .+.++.....+..... -++. .|. - ++-........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~l~~~~~~~~vi~L~-~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~ 172 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEALDKICEVDLVISLN-IPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDD 172 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHHHHTTCCCCEEEEEE-CCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred cCCCeEEEECCC-CCHHHHHHHHhhcCCCEEEEEE-CCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccc
Confidence 111 1222222111111110 0000 000 0 00001122345888 55 888 9999999999
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHHc
Q 001980 909 ---EATSALDAESECVLQEALERLM 930 (987)
Q Consensus 909 ---EaTS~LD~~te~~I~~~l~~~~ 930 (987)
|||+++|..+...+++.++++.
T Consensus 173 ~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 173 VTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999998764
No 252
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.23 E-value=7.6e-12 Score=122.01 Aligned_cols=91 Identities=18% Similarity=0.277 Sum_probs=69.0
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG--HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILE 194 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G--~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 194 (987)
+|+++ +|+.++|+||+|||||||+++++|++.+ +| .+++++.++.. .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~--------------------~----- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL--------------------T----- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC--------------------C-----
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH--------------------H-----
Confidence 46666 8999999999999999999999999877 46 44444321110 0
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHH
Q 001980 195 NILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274 (987)
Q Consensus 195 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~ 274 (987)
+++.+|++|++|||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 3467899999999998 666668
Q ss_pred HHHHHHHHhhh-CCCe-EEEEcCC
Q 001980 275 SIVQEALDRLM-VGRT-TVVVAHR 296 (987)
Q Consensus 275 ~~i~~~l~~~~-~~~t-vi~vtH~ 296 (987)
+.+++.+..+. +|++ +|++||.
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 88888887764 4788 7888885
No 253
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.22 E-value=3.6e-14 Score=165.84 Aligned_cols=172 Identities=15% Similarity=0.150 Sum_probs=111.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCch-hcHHH
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILE 194 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~e 194 (987)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+--..+. ...++++.|...... .|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 46788999999999999999999999999999999999999999998865222211 235777777655222 26776
Q ss_pred HHhcC---CC------CCCHHHHHHHHHHHh-------------HHH---HHHhCCCCCccccc-------CCCCCCChH
Q 001980 195 NILYG---KP------EATMAEVEAAASAAN-------------AHS---FITLLPNGYSTQVG-------ERGVQLSGG 242 (987)
Q Consensus 195 ni~~~---~~------~~~~~~~~~~~~~~~-------------~~~---~~~~~~~g~~t~~~-------~~g~~LSgG 242 (987)
++... .| +.+..+...+.+... ..+ .+...|.|....+. .....+|||
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 66432 22 222223333332221 112 22222333332211 223458999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEE--EcCCCCcccc
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVV--VAHRLSTIRN 302 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~--vtH~~~~~~~ 302 (987)
||||.++|. + | |++||+...+.+.+.+.++. .++|+++ +||+++.+..
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 999987651 1 6 99999987776666666664 3788875 8999887654
No 254
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=6.8e-12 Score=141.29 Aligned_cols=138 Identities=15% Similarity=0.228 Sum_probs=79.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCc-hhcHHHHHhcCCCCCCHHH
Q 001980 130 TVAVVGGSGSGKSTVVSLIER-FYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF-ATTILENILYGKPEATMAE 207 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~ 207 (987)
.+.|+||+|+||||++++++| ++.|+.|.+.++|.+...... .+..+++++|.+++. +.+- .+. .....
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MGN--NDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cCC--cchHH
Confidence 389999999999999999999 789999999999977653222 256789999987642 1110 000 01111
Q ss_pred HHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCC
Q 001980 208 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG 287 (987)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~ 287 (987)
+.+..+ +..... +++..+ .||| +..+|+++|+|||++ ||+.+.+.+.+.+.+...+
T Consensus 109 ~~~~i~-----~~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLK-----EVAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHH-----HHTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHH-----HHHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 222111 111111 122111 5676 778999999999999 9999999999999887778
Q ss_pred CeEEEEcCCCCcc
Q 001980 288 RTTVVVAHRLSTI 300 (987)
Q Consensus 288 ~tvi~vtH~~~~~ 300 (987)
.++|++||+++.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999998765
No 255
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.16 E-value=4.3e-12 Score=128.31 Aligned_cols=112 Identities=14% Similarity=0.106 Sum_probs=75.8
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCC
Q 001980 122 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP 201 (987)
Q Consensus 122 ~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~ 201 (987)
+|++++|+.++|+||+|||||||++++++.+.|..|.. +.|+ +..+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~~------ 78 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKDL------ 78 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHHH------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHHH------
Confidence 46678899999999999999999999999987666521 1111 11111
Q ss_pred CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCChHHHHHHHHH
Q 001980 202 EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS-ALDAGSESIVQEA 280 (987)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts-~LD~~~~~~i~~~ 280 (987)
...... .... +. .. -....+.+|++|+||||++ ++|+...+.+.+.
T Consensus 79 -------~~~~~~-----~~~~---~~----------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 79 -------IFRLKH-----LMDE---GK----------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -------HHHHHH-----HHHH---TC----------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -------HHHHHH-----HhcC---ch----------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 110000 0100 00 00 0122345999999999996 8999999999998
Q ss_pred HHhhh-CCCeEEEEcCCCCc
Q 001980 281 LDRLM-VGRTTVVVAHRLST 299 (987)
Q Consensus 281 l~~~~-~~~tvi~vtH~~~~ 299 (987)
+.... .++++|++||....
T Consensus 126 l~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHTTCEEEEECCCCSC
T ss_pred HHHHHHcCCCEEEEcCCChh
Confidence 87764 68999999998653
No 256
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.14 E-value=9.8e-12 Score=141.18 Aligned_cols=153 Identities=22% Similarity=0.229 Sum_probs=95.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhc
Q 001980 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIA 842 (987)
Q Consensus 763 L~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~ 842 (987)
-++++|+++.|+.|+|||++|||||||+++|.+..+ .+.+.+..++ ...+++|+|+.. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 489999999999999999999999999999999843 4555555443 456788887651 1112222221
Q ss_pred cCC-----CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 001980 843 YGK-----EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917 (987)
Q Consensus 843 ~~~-----~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~ 917 (987)
+.. ..... ...+..+.+...=++-.+. +.++ .+||+||+||+++||+|..+|.||++ +.+|..
T Consensus 215 li~~a~~~~~L~~-~fl~~~era~~lL~vvDls---~~~~----~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGL-EFLRHIARTRVLLYVLDAA---DEPL----KTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCH-HHHHHHTSSSEEEEEEETT---SCHH----HHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhH-HHHHHHHHHHhhhEEeCCc---cCCH----HHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 100 00111 1112122221111111111 2222 35999999999999999999999999 999987
Q ss_pred HHHHHHHHHHHHc--CCCeEEEEec
Q 001980 918 SECVLQEALERLM--RGRTTVLVAH 940 (987)
Q Consensus 918 te~~I~~~l~~~~--~~~TvI~IaH 940 (987)
... ..+.+.+.. .+.+++.||.
T Consensus 283 ~~~-~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEE-AVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHH-HHHHHHHHHHTTTSCEEECCT
T ss_pred hHH-HHHHHHHHHHhcCCeEEEEEC
Confidence 663 334443332 3668887753
No 257
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.13 E-value=4e-12 Score=139.37 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=73.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEeCCCCCHHHHh-cceEEEcCCCCCc-----h-hcHH
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL---DNVDIKTLQLRWLR-DQIGLVNQEPALF-----A-TTIL 193 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~-~~i~~v~Q~~~l~-----~-~tv~ 193 (987)
++.+|++++|+||||||||||+++|+ +.+|++|+|.+ +|.++..... ..+ ..+||++|+|.+. + -|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 44679999999999999999999999 99999999999 8988765432 222 3689999999653 3 388
Q ss_pred HHH--hcCC------------C-CCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCCCCChHHHHHHHHHH
Q 001980 194 ENI--LYGK------------P-EATMAEVEAAASAANAHSFITLLPNGYST-QVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 194 eni--~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~~LSgGqkqRialAR 251 (987)
||+ .|+. + ......+.++++.. |+.. ........|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~-----------~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNG-----------EISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTT-----------SSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcC-----------CCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888 4431 0 01112233333332 3332 233344579999999999987
No 258
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.12 E-value=5.3e-14 Score=152.14 Aligned_cols=143 Identities=15% Similarity=0.180 Sum_probs=99.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCC-CCchh-cHH
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEP-ALFAT-TIL 193 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~-~l~~~-tv~ 193 (987)
.+++++++++++| ++|+||||||||||+++|+|++.+ |.|.++|.++........++.+++++|++ ..++. ++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 3789999999999 999999999999999999999887 79999998886654445566788999875 33433 666
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC------
Q 001980 194 ENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS------ 267 (987)
Q Consensus 194 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts------ 267 (987)
||+....+........ . ....+.+....|||||+||+.+++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~~-~----------------~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRETG-A----------------SVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC--------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcch-H----------------HHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 7776533211110000 0 000111122369999999999999999999974 99864
Q ss_pred ------CCChHHHHHHHHHH
Q 001980 268 ------ALDAGSESIVQEAL 281 (987)
Q Consensus 268 ------~LD~~~~~~i~~~l 281 (987)
--|...+..+++.+
T Consensus 171 ~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHH
Confidence 23556666666554
No 259
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.12 E-value=2.5e-13 Score=146.85 Aligned_cols=143 Identities=17% Similarity=0.220 Sum_probs=104.6
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEcccc-ccc-cccHH
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP-ALF-AASIF 838 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp-~lF-~gTIr 838 (987)
.+++++++.+++| ++|+||+|||||||+++|.+...+ |.|.++|.++.+......++++++++|++ ..+ .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4799999999999 999999999999999999999876 79999999998776677788899999986 333 23677
Q ss_pred HHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC------
Q 001980 839 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS------ 912 (987)
Q Consensus 839 eNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS------ 912 (987)
||++...+...+.+. ......+..+ + ..|||||+||..+++|+..+|++| |||..
T Consensus 110 Deid~~~~~r~~~~~------~~~~~~~~~~-------l----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRET------GASVRVVNQL-------L----TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC---------------CTTHHHHH-------H----HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcc------hHHHHHHHHH-------H----HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 888754332211110 0111222222 1 258999999999999999999985 99975
Q ss_pred ------CCCHHHHHHHHHHH
Q 001980 913 ------ALDAESECVLQEAL 926 (987)
Q Consensus 913 ------~LD~~te~~I~~~l 926 (987)
--|.+....|.+.+
T Consensus 171 ~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHH
Confidence 23566666666554
No 260
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.12 E-value=7.8e-13 Score=145.68 Aligned_cols=140 Identities=17% Similarity=0.215 Sum_probs=97.0
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEE-------------------eCCcEEEEEcCCCCChHHHHHHHhccCC--CC
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRI-------------------RAGQSQALVGASGSGKSSVIALIERFYD--PT 800 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I-------------------~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--p~ 800 (987)
++.|+++||++.|. ++++++|+.+ ++|+++||+|+||||||||+++|.+++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 46799999999992 5899999988 8999999999999999999999999998 99
Q ss_pred CceEEE---CCccCCCCCHHHHhcccEEEccccccc-cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCc
Q 001980 801 AGKVMI---DGKDIRRLNLKSLRLKIGLVQQEPALF-AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTP 876 (987)
Q Consensus 801 ~G~I~i---dG~di~~i~l~~lR~~i~~VpQdp~lF-~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~ 876 (987)
+|+|.+ ||.+.. ...|+.++++ |+..++ .-|+.+|+.+.. .+ ..-.+.+ ..| -++
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~----------~l--~~~~~~i-~~P-~~~-- 168 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVS----------DL--KSGVPNV-TAP-VYS-- 168 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHH----------HH--TTTCSCE-EEC-CEE--
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHH----------HH--hCCCCce-ecc-ccc--
Confidence 999999 998752 2456778888 766543 346777764310 00 0000000 011 111
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 001980 877 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916 (987)
Q Consensus 877 vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~ 916 (987)
.+.+ +|+..+.+.+.+++++|+|.|....|.
T Consensus 169 -------~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 169 -------HLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp -------TTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred -------cccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 1222 233333355678999999999887763
No 261
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.12 E-value=1e-11 Score=136.13 Aligned_cols=114 Identities=16% Similarity=0.124 Sum_probs=80.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE---CCccCCCCCHHHHh-cccEEEcccccc------ccccHH
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI---DGKDIRRLNLKSLR-LKIGLVQQEPAL------FAASIF 838 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~i~l~~lR-~~i~~VpQdp~l------F~gTIr 838 (987)
.+.+|+.++|+|+||||||||+++|. +.+|..|+|.+ +|.++..... ..+ +.+++|+|+|-+ ..-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 34569999999999999999999999 99999999999 9998876442 223 379999999954 24578
Q ss_pred HHh--ccC--------CCC-----CCHHHHHHHHHHcCchh-hHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 839 DNI--AYG--------KEG-----ATEAEVVEAARAANVHG-FVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 839 eNL--~~~--------~~~-----~sd~ei~~al~~a~l~~-~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+|+ .++ ..+ .....+.++++..++.+ ...+.| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 443 111 12346788888888875 444333 248998888999987
No 262
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.11 E-value=6.3e-11 Score=119.65 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=76.0
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCC
Q 001980 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE 846 (987)
Q Consensus 767 sl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~ 846 (987)
+|.+++|+.++|+||+|+|||||++++.+.+.|.+|... .++ +..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------------------~~~---------~~~-------- 76 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------------------YFF---------DTK-------- 76 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------------------CEE---------EHH--------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------------------EEE---------EHH--------
Confidence 466788999999999999999999999999876666310 010 111
Q ss_pred CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHH
Q 001980 847 GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS-ALDAESECVLQEA 925 (987)
Q Consensus 847 ~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS-~LD~~te~~I~~~ 925 (987)
++.+.+... ... + ... -....+.+|++|+||||++ ++|+.....+.+.
T Consensus 77 -----~~~~~~~~~-----~~~---~----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 77 -----DLIFRLKHL-----MDE---G----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -----HHHHHHHHH-----HHH---T----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -----HHHHHHHHH-----hcC---c----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 111111110 000 0 000 1122345999999999996 8999999999999
Q ss_pred HHHHc-CCCeEEEEecCch
Q 001980 926 LERLM-RGRTTVLVAHRLS 943 (987)
Q Consensus 926 l~~~~-~~~TvI~IaHRl~ 943 (987)
+.+.. +++|+|++||+..
T Consensus 126 l~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHcCCCEEEEcCCCh
Confidence 98765 6899999999874
No 263
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.08 E-value=2.6e-13 Score=143.31 Aligned_cols=176 Identities=14% Similarity=0.107 Sum_probs=74.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh-ccC------------CCCCceEEECCccCCCCCHHHHhcccEEEcc
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIE-RFY------------DPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQ 828 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~-rl~------------~p~~G~I~idG~di~~i~l~~lR~~i~~VpQ 828 (987)
-.+++||++++|+.+||+||||||||||+++|. +++ +|..|.+ +|+++...+...++.. +.+
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CSN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HHT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hhc
Confidence 578999999999999999999999999999999 998 5555544 4544443343333321 123
Q ss_pred ccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH-HHHH-HHccCCCEEE
Q 001980 829 EPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI-AIAR-AVLKNPAILL 906 (987)
Q Consensus 829 dp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl-aLAR-Allr~p~ILl 906 (987)
+.+++.+++..|+ ++.+. +++.++++.... .+ +|.++. -...-++++ .-++ .++..|+..+
T Consensus 91 ~~~~~~~~~~~~~-~~~~~---~~i~~~~~~~~~--vi------ld~~~~-----g~~~~~~~~~~~~~~v~v~~~~~~~ 153 (231)
T 3lnc_A 91 GEIIEHAEVFGNF-YGVPR---KNLEDNVDKGVS--TL------LVIDWQ-----GAFKFMEMMREHVVSIFIMPPSMEE 153 (231)
T ss_dssp TCEEEEEEETTEE-EEEEC---TTHHHHHHHTCE--EE------EECCHH-----HHHHHHHHSGGGEEEEEEECSCHHH
T ss_pred Cceehhhhhcccc-CCCCH---HHHHHHHHcCCe--EE------EEcCHH-----HHHHHHHhcCCCeEEEEEECCcHHH
Confidence 3333344444444 33222 233333333110 01 010000 001113333 2222 3456778888
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcC------CCeEEEEecCchhh-hccCEEEEEeCCEE
Q 001980 907 LDEATSALDAESECVLQEALERLMR------GRTTVLVAHRLSTI-RGVDCIGVVQDGRI 959 (987)
Q Consensus 907 LDEaTS~LD~~te~~I~~~l~~~~~------~~TvI~IaHRl~ti-~~~D~Iivl~~G~i 959 (987)
+||..++.|..+++.+++.|+.... ..+.+++.|.++.+ ...++++....++.
T Consensus 154 l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~ 213 (231)
T 3lnc_A 154 LRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKT 213 (231)
T ss_dssp HHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBG
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhcc
Confidence 8999999999999888877765432 34555555655433 23344443333443
No 264
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.08 E-value=8e-13 Score=145.57 Aligned_cols=139 Identities=16% Similarity=0.198 Sum_probs=96.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEE-------------------eCCcEEEEEcCCCccHHHHHHHHHcCCC--CCc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFF-------------------PAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA 156 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i-------------------~~G~~~~ivG~sGsGKSTLl~~l~g~~~--~~~ 156 (987)
..|+++||++.|. ++++++++.+ ++|++++|+||||||||||+++|.|++. |++
T Consensus 36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 4588999999993 4889999988 8999999999999999999999999998 999
Q ss_pred cEEEE---CCEeCCCCCHHHHhcceEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccc
Q 001980 157 GHVLL---DNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV 232 (987)
Q Consensus 157 G~i~~---~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 232 (987)
|+|.+ ||.... . ..++.++++ |+..++.. |+.+|+.+.. .+..|.. .+
T Consensus 111 G~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~----------------------~l~~~~~-~i 162 (308)
T 1sq5_A 111 RRVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKFVS----------------------DLKSGVP-NV 162 (308)
T ss_dssp CCEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHHHH----------------------HHTTTCS-CE
T ss_pred CeEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHHHH----------------------HHhCCCC-ce
Confidence 99999 886642 2 334568888 87666544 7777765421 0001111 00
Q ss_pred cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCh
Q 001980 233 GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271 (987)
Q Consensus 233 ~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~ 271 (987)
.......+.+ +|+..+.+...+++++|+|.|....+.
T Consensus 163 ~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 163 TAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp EECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred eccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 0001111222 333333355678999999999988774
No 265
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.04 E-value=2.1e-10 Score=125.05 Aligned_cols=142 Identities=18% Similarity=0.159 Sum_probs=101.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
+.++++++.|... + ++++|+ +|+.++++|++|+||||++..|.+++.+.+|+|.+.+.|+..-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 5566777788422 1 678888 99999999999999999999999999999999999998876421110
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
++....+..++.- +|.+ ..-...+-||.+|+++..+++++
T Consensus 144 ---------------------------ql~~~~~~~~l~~----~~~~---------~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 144 ---------------------------QLRLLGEKVGVPV----LEVM---------DGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp ---------------------------HHHHHHHHHTCCE----EECC---------TTCCHHHHHHHHHHHHHHHTCCE
T ss_pred ---------------------------HHHHhcccCCeEE----EEcC---------CCCCHHHHHHHHHHHHHhCCCCE
Confidence 0000111122211 1111 11234456789999998899999
Q ss_pred EEEeCC-CCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Q 001980 905 LLLDEA-TSALDAESECVLQEALERLMRGRTTVLVA 939 (987)
Q Consensus 905 LlLDEa-TS~LD~~te~~I~~~l~~~~~~~TvI~Ia 939 (987)
+|+||| |+++|...-..+.+..+....+.+++++.
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 999999 99999988888888877766666766654
No 266
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.03 E-value=4.5e-11 Score=135.72 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=91.1
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHh
Q 001980 118 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENIL 197 (987)
Q Consensus 118 l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~ 197 (987)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+...+. ..++++.|+.. ..-++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl~-----p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTLS-----PNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSSC-----CEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccceec-----ceeeEEEecCc-ceEEEEeccc
Confidence 379999999999999999999999999999999843 34444433322 24666666530 0112222211
Q ss_pred cCCC-----CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChH
Q 001980 198 YGKP-----EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272 (987)
Q Consensus 198 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~ 272 (987)
+... .... ...+..+.+ ...+..+ +.. .+...+||+||+||+++|++|..+|.++++ +.+|..
T Consensus 215 li~~a~~~~~L~~-~fl~~~era--~~lL~vv--Dls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGL-EFLRHIART--RVLLYVL--DAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCH-HHHHHHTSS--SEEEEEE--ETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhH-HHHHHHHHH--HhhhEEe--CCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 1100 0111 111100000 0001110 010 223346999999999999999999999999 999998
Q ss_pred HHHHHHHHHHh-hh-CCCeEEEEcCC
Q 001980 273 SESIVQEALDR-LM-VGRTTVVVAHR 296 (987)
Q Consensus 273 ~~~~i~~~l~~-~~-~~~tvi~vtH~ 296 (987)
... ..+.+.+ +. .+.+++.+|..
T Consensus 283 ~~~-~~~~l~~~l~~~g~~vi~iSA~ 307 (416)
T 1udx_A 283 EEE-AVKALADALAREGLAVLPVSAL 307 (416)
T ss_dssp CHH-HHHHHHHHHHTTTSCEEECCTT
T ss_pred hHH-HHHHHHHHHHhcCCeEEEEECC
Confidence 663 3333433 32 36677777653
No 267
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.99 E-value=7.4e-12 Score=131.53 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=102.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccC---CCCCceEEE--------CCccCCC-CCHHHHhcccEEEcccc------cccc
Q 001980 773 GQSQALVGASGSGKSSVIALIERFY---DPTAGKVMI--------DGKDIRR-LNLKSLRLKIGLVQQEP------ALFA 834 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~---~p~~G~I~i--------dG~di~~-i~l~~lR~~i~~VpQdp------~lF~ 834 (987)
+.+++|+|++||||||++++|.+.+ .++.|.|.. +|.++.+ ....++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999877 778899888 7887763 56778899999999987 4566
Q ss_pred ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCcc-CCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q 001980 835 ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPV-GERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 912 (987)
Q Consensus 835 gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~v-ge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS 912 (987)
.++.+++. ++++..++..+..++++.....+..+.+ .++|.-++|+ .++++++++++++|+.+++.
T Consensus 85 ~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 85 EDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred eeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 67888863 5688889999999998887655555444 2456677876 46677889999999988753
No 268
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.96 E-value=8.5e-10 Score=120.33 Aligned_cols=98 Identities=16% Similarity=0.288 Sum_probs=73.0
Q ss_pred eeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC
Q 001980 766 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK 845 (987)
Q Consensus 766 vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~ 845 (987)
+++..++|+.++|+|++||||||++..|.+.+.+.+|+|.+.+.|+.... ..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~---------------------a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA---------------------AI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH---------------------HH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH---------------------HH-------
Confidence 34456789999999999999999999999999999899999887753210 11
Q ss_pred CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH---HHHHHHccCCCEEEEeCCCC
Q 001980 846 EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI---AIARAVLKNPAILLLDEATS 912 (987)
Q Consensus 846 ~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl---aLARAllr~p~ILlLDEaTS 912 (987)
+++...++..++.- + ...|+|+.|++ +|+||+.++++++|+|||..
T Consensus 149 -----eqL~~~~~~~gl~~------------~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 -----EQLKIWGERVGATV------------I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HHHHHHHHHHTCEE------------E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HHHHHHHHHcCCcE------------E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 12222233333211 1 13588999999 99999999999999999984
No 269
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.95 E-value=6.9e-11 Score=129.55 Aligned_cols=94 Identities=19% Similarity=0.177 Sum_probs=61.1
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEeCCCCCHHHHhcceEEEcCCCC-------------
Q 001980 123 IFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL---DNVDIKTLQLRWLRDQIGLVNQEPA------------- 186 (987)
Q Consensus 123 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~i~~v~Q~~~------------- 186 (987)
|++.+|++++|+||||||||||+++|+|+.+|++|+|.+ +|.++.........+.++|++|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 8988865442111236899999985
Q ss_pred ---Cchh-cHHHHHhcCCC---CCCHHHHHHHHHHHhH
Q 001980 187 ---LFAT-TILENILYGKP---EATMAEVEAAASAANA 217 (987)
Q Consensus 187 ---l~~~-tv~eni~~~~~---~~~~~~~~~~~~~~~~ 217 (987)
+|+. |+ +|+.|+.- .....++.++++..++
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L 280 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEI 280 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSS
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCC
Confidence 3554 88 99988531 1223456666666555
No 270
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.95 E-value=3.4e-10 Score=130.11 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=56.3
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH
Q 001980 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 816 (987)
Q Consensus 746 ~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l 816 (987)
.+.++++.+ ..+|+|+||+|++ |.+||+||||||||||+++|.|+++|++|+|.++|.++...+.
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 455665533 1379999999999 9999999999999999999999999999999999999876543
No 271
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.94 E-value=1.4e-10 Score=127.18 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=68.0
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE---CCccCCCCCHHHHhcccEEEccccc-------------
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI---DGKDIRRLNLKSLRLKIGLVQQEPA------------- 831 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~i~l~~lR~~i~~VpQdp~------------- 831 (987)
|++.+|+.++|+|+||||||||+++|.|+..|++|+|.+ +|.++.........+++++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 345679999999999999999999999999999999999 9999876542111246999999985
Q ss_pred ---cc-cccHHHHhccCCC---CCCHHHHHHHHHHcCch-hhHhhCC
Q 001980 832 ---LF-AASIFDNIAYGKE---GATEAEVVEAARAANVH-GFVSALP 870 (987)
Q Consensus 832 ---lF-~gTIreNL~~~~~---~~sd~ei~~al~~a~l~-~~i~~lp 870 (987)
+| .-|+ +|+.++.. ...+..+.++++..++. +...+.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 34 3477 88887531 12245688999999994 5555544
No 272
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.94 E-value=6.8e-13 Score=140.01 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=56.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCccEEEECCEeCCCCCHH-HHhcceEEEcCCCCCchh-cHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIE-RFYDPNAGHVLLDNVDIKTLQLR-WLRDQIGLVNQEPALFAT-TIL 193 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~-g~~~~~~G~i~~~g~~~~~~~~~-~~~~~i~~v~Q~~~l~~~-tv~ 193 (987)
..+++||++++|++++|+||||||||||+++|+ |++++. ..+.++...++. .....+.|.+|++..|.. +..
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhhhc
Confidence 468999999999999999999999999999999 998431 222222111110 001234567776655543 444
Q ss_pred HHHhc---------CCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCCh--HHHHHH-HHHH-HhccCCCEE
Q 001980 194 ENILY---------GKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSG--GQKQRI-AIAR-AMLKNPKIL 260 (987)
Q Consensus 194 eni~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg--GqkqRi-alAR-al~~~~~il 260 (987)
+|+.. +.+. +.+.+..+. |....+.- .+.| .-+++. .-++ .++..|+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~---~~i~~~~~~------------~~~vild~---~~~g~~~~~~~~~~~~~~v~v~~~~~~ 152 (231)
T 3lnc_A 91 GEIIEHAEVFGNFYGVPR---KNLEDNVDK------------GVSTLLVI---DWQGAFKFMEMMREHVVSIFIMPPSME 152 (231)
T ss_dssp TCEEEEEEETTEEEEEEC---TTHHHHHHH------------TCEEEEEC---CHHHHHHHHHHSGGGEEEEEEECSCHH
T ss_pred CceehhhhhccccCCCCH---HHHHHHHHc------------CCeEEEEc---CHHHHHHHHHhcCCCeEEEEEECCcHH
Confidence 44431 1111 112222111 11111110 1111 113333 1122 235677778
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhh
Q 001980 261 LLDEATSALDAGSESIVQEALDRL 284 (987)
Q Consensus 261 llDEpts~LD~~~~~~i~~~l~~~ 284 (987)
++||++.+.|..+++.+.+.+...
T Consensus 153 ~l~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 153 ELRRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp HHHHC--------------CHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHH
Confidence 888999999988877777776544
No 273
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.90 E-value=1.1e-10 Score=124.49 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=76.9
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh---ccCCCCCceEE--------ECCccC-CCCCHHHHhcccEEEcc
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE---RFYDPTAGKVM--------IDGKDI-RRLNLKSLRLKIGLVQQ 828 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~---rl~~p~~G~I~--------idG~di-~~i~l~~lR~~i~~VpQ 828 (987)
.++++.+ ++|++|+|+|++||||||++++|. |++.|++|.|. .+|.++ .......+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3455544 789999999999999999999999 99999999999 999999 45678899999999996
Q ss_pred c------cccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhC
Q 001980 829 E------PALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSAL 869 (987)
Q Consensus 829 d------p~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~l 869 (987)
+ ..++..++.+|+. .+++..++..+..++.+...
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~-------~~~v~~~~s~~~~~~~vr~~ 134 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR-------TETVGNTASQAAAFPRVREA 134 (252)
T ss_dssp EETTEEEEEETTEECTTGGG-------SHHHHHHHHHHTTSHHHHHH
T ss_pred cCCCCceEEECCeehhHHHH-------HHHHHHHHHHhcccHHHHHH
Confidence 5 4567788888874 24566666666666665443
No 274
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.88 E-value=1.2e-09 Score=118.92 Aligned_cols=138 Identities=13% Similarity=0.166 Sum_probs=90.9
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCH
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATE 850 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd 850 (987)
++|+.++++|++||||||++..|.+.+.+.+| +++.++.+|++ ..+..+++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 46899999999999999999999999988777 35677777773 333333332
Q ss_pred HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 001980 851 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 930 (987)
Q Consensus 851 ~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~ 930 (987)
...+..++ | -... .+ ++..+.+|+++ ++++++|+| |+++|+..+..+.+..+-..
T Consensus 155 ----~~~~~~gl-------~----~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 155 ----TYAELLQA-------P----LEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp ----HHHTTTTC-------C----CCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred ----HHHHhcCC-------C----eEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 11111211 1 1111 12 34456777764 999999999 99999877766655443322
Q ss_pred ---CCCeEEEE--ecCchhhhc-cCEEEEEeCCEEEE
Q 001980 931 ---RGRTTVLV--AHRLSTIRG-VDCIGVVQDGRIVE 961 (987)
Q Consensus 931 ---~~~TvI~I--aHRl~ti~~-~D~Iivl~~G~ive 961 (987)
.+.+++++ +|..+.+.. +|++..++.|.++-
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23456666 898777765 56655566677665
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.84 E-value=1.5e-09 Score=118.45 Aligned_cols=112 Identities=19% Similarity=0.336 Sum_probs=77.7
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCC
Q 001980 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK 200 (987)
Q Consensus 121 i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~ 200 (987)
++++.++|++++|+|+|||||||+++.|++.+.+..|+|.+.+.|... ....++
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------------------~~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------------------AAAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------------------HHHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------------------HHHHHH-----
Confidence 455668899999999999999999999999999988888876654311 011111
Q ss_pred CCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH---HHHHHhccCCCEEEEeCCCCCCChHHHHHH
Q 001980 201 PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI---AIARAMLKNPKILLLDEATSALDAGSESIV 277 (987)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi---alARal~~~~~illlDEpts~LD~~~~~~i 277 (987)
+...++ .. |+.. + ..+|||+.|++ +|++|+..+|+++|+|+|.. .+....+
T Consensus 151 -------L~~~~~---------~~--gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l 204 (306)
T 1vma_A 151 -------LKIWGE---------RV--GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNL 204 (306)
T ss_dssp -------HHHHHH---------HH--TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHH
T ss_pred -------HHHHHH---------Hc--CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHH
Confidence 111111 11 2221 1 24689999999 99999999999999999973 3444555
Q ss_pred HHHHHhh
Q 001980 278 QEALDRL 284 (987)
Q Consensus 278 ~~~l~~~ 284 (987)
++.+.++
T Consensus 205 ~~eL~~l 211 (306)
T 1vma_A 205 MEELRKV 211 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 276
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.83 E-value=4.9e-09 Score=114.19 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=90.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
+.++++++.|+.. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|....
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~---------- 139 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP---------- 139 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH----------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH----------
Confidence 5567788888632 1 678888 9999999999999999999999999999889988876554210
Q ss_pred EEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 001980 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 259 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~i 259 (987)
.+. + +..... +.. |++-... +....-.+-+|.+|+++...++|+
T Consensus 140 ----------~~~-~------------ql~~~~------~~~-----~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 140 ----------AAR-E------------QLRLLG------EKV-----GVPVLEV--MDGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp ----------HHH-H------------HHHHHH------HHH-----TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred ----------hHH-H------------HHHHhc------ccC-----CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCE
Confidence 010 0 000001 101 2221111 112234456799999998899999
Q ss_pred EEEeCC-CCCCChHHHHHHHHHHHhh
Q 001980 260 LLLDEA-TSALDAGSESIVQEALDRL 284 (987)
Q Consensus 260 lllDEp-ts~LD~~~~~~i~~~l~~~ 284 (987)
+|+|+| ++++|......+.+.....
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhc
Confidence 999999 9999988777776665543
No 277
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.83 E-value=1.3e-11 Score=138.89 Aligned_cols=169 Identities=17% Similarity=0.194 Sum_probs=110.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhc------------cCCCCCceEEECCccCCCCC-HHHHhccc---EEEcccccc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIER------------FYDPTAGKVMIDGKDIRRLN-LKSLRLKI---GLVQQEPAL 832 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~r------------l~~p~~G~I~idG~di~~i~-l~~lR~~i---~~VpQdp~l 832 (987)
.+++|+++||||++|+|||||+++|.| ..+|+.|.+.++|..+..+. ...-++.+ ..+.+-|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 67899999999985432110 00011222 356666665
Q ss_pred ccc-cHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC--CEEEEeC
Q 001980 833 FAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP--AILLLDE 909 (987)
Q Consensus 833 F~g-TIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p--~ILlLDE 909 (987)
..+ |..+++. ......++.+..--++-..-+ +..+ ..+|++. +| +|+++||
T Consensus 96 ~~~~s~~e~L~--------~~fl~~ir~~d~il~Vvd~~~--d~~i----~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGLG--------NAFLSHVRAVDAIYQVVRAFD--DAEI----IHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSSC--------HHHHHHHTTCSEEEEEEECCC--TTCS----SCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHHH--------HHHHHHHHHHHHHHHHHhccc--ccee----eeecccc------------Ccchhhhhchh
Confidence 543 2233321 123333333322111111111 1222 2355542 88 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH-cC-CCeEEEEecCchhhhc-cCEEE-EEeCC-EEEEecCh
Q 001980 910 ATSALDAESECVLQEALERL-MR-GRTTVLVAHRLSTIRG-VDCIG-VVQDG-RIVEQGSH 965 (987)
Q Consensus 910 aTS~LD~~te~~I~~~l~~~-~~-~~TvI~IaHRl~ti~~-~D~Ii-vl~~G-~ive~Gt~ 965 (987)
+++..|++.-...++.++.. .+ +.|++ +|.+..+.. ||+|. +|++| +++..|+.
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999999999999988887 44 45643 999988765 79999 99999 88766653
No 278
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.82 E-value=1.7e-10 Score=125.41 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=44.5
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEeCCCCCHHHHhcceEEEcCCCCCch-----hcHHH
Q 001980 123 IFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL---DNVDIKTLQLRWLRDQIGLVNQEPALFA-----TTILE 194 (987)
Q Consensus 123 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-----~tv~e 194 (987)
+++.+|++++|+||||||||||+++|+|+..|..|+|.+ +|.+.+... ...+..++|++|+|.+.. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 456789999999999999999999999999999999998 887765432 122223899999997653 378 9
Q ss_pred HHh
Q 001980 195 NIL 197 (987)
Q Consensus 195 ni~ 197 (987)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 984
No 279
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.82 E-value=9.6e-10 Score=126.33 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=48.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT 168 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~ 168 (987)
+|+++||++++ ++++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 79999999999 9999999999999999999999999999999999977654
No 280
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.81 E-value=4.6e-10 Score=115.68 Aligned_cols=73 Identities=11% Similarity=0.092 Sum_probs=55.6
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchh-cHHHHHhc
Q 001980 122 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILY 198 (987)
Q Consensus 122 ~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~ 198 (987)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++..|.. ++.+|+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEe
Confidence 56788999999999999999999999999974 577887776655444446679999999987765 66666653
No 281
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.80 E-value=3.3e-10 Score=123.17 Aligned_cols=93 Identities=20% Similarity=0.298 Sum_probs=54.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE---CCccCCCCCHHHHhcccEEEcccccccc-----ccHHHHh
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI---DGKDIRRLNLKSLRLKIGLVQQEPALFA-----ASIFDNI 841 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~i~l~~lR~~i~~VpQdp~lF~-----gTIreNL 841 (987)
+.+|++++|+|+||+|||||+++|.|+..|..|+|.+ +|.++.... ..++..+++|+|.|-++. -|+ +||
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l 247 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EEL 247 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HHH
Confidence 4579999999999999999999999999999999999 898876543 222223899999997653 477 888
Q ss_pred ccCCC------------C-----CCHHHHHHHHHHcCchh
Q 001980 842 AYGKE------------G-----ATEAEVVEAARAANVHG 864 (987)
Q Consensus 842 ~~~~~------------~-----~sd~ei~~al~~a~l~~ 864 (987)
....+ + .....+.++++..++.+
T Consensus 248 ~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 248 GYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp GGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 31111 1 12345777888887765
No 282
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.80 E-value=2.8e-12 Score=143.06 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=97.6
Q ss_pred EEeEEEECCCCCCccceeeeeEEEeCC-------cEEEEEcCCCccHHHHHHHHHcCC----CCCccEEEECCEeCCCCC
Q 001980 102 FKNVTFSYPSRPDVIIFRDFSIFFPAG-------KTVAVVGGSGSGKSTVVSLIERFY----DPNAGHVLLDNVDIKTLQ 170 (987)
Q Consensus 102 ~~~~~~~y~~~~~~~~l~~i~l~i~~G-------~~~~ivG~sGsGKSTLl~~l~g~~----~~~~G~i~~~g~~~~~~~ 170 (987)
.++++..|+. ..+++++++.+++| +.++|+||||+|||||+++|+|++ .+++|.+..++.++....
T Consensus 21 ~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 21 PKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp CSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred CccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 3355555653 24789999999877 899999999999999999999998 667777766554432211
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHH---HHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEV---EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
....+..|.+++|.+.+.. ++.|++..........-+ ....+. +...+. +-++.. ...+...||+|+|||+
T Consensus 98 ~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~--i~~~l~--~~~li~-at~~~~~Ls~~l~sR~ 171 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKS--IRIDIQ--PFTLVG-ATTRSGLLSSPLRSRF 171 (334)
T ss_dssp HHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------C--CCEEEE-EESCGGGSCHHHHTTC
T ss_pred HHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccccc--ccccCC--CeEEEE-ecCCcccCCHHHHHhc
Confidence 1111357999999887765 788877432110000000 000000 011111 112211 2334568999999998
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 285 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 285 (987)
+++ .+||+.+.+.+.+.|++..
T Consensus 172 ~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 172 GII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp SEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred Cce----------------eeCCCCCHHHHHHHHHHHH
Confidence 655 7788888888888887654
No 283
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.80 E-value=3.4e-09 Score=115.37 Aligned_cols=139 Identities=14% Similarity=0.190 Sum_probs=88.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCH
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATM 205 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 205 (987)
.+|++++++|+|||||||+++.|++.+.+++| ++|.++.++++ ..+..|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH-------
Confidence 47999999999999999999999999988777 15777888773 2233333221
Q ss_pred HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 001980 206 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 285 (987)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 285 (987)
.. ... |...... ..++..+.+|+++ .+++++|+| |+++|+.....+.+..+-+.
T Consensus 156 -----~~---------~~~--gl~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 156 -----YA---------ELL--QAPLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -----HH---------TTT--TCCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -----HH---------Hhc--CCCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 11 111 2211111 1235567778764 999999999 99999876655554433222
Q ss_pred ---CCCeEEEE--cCCCCcccc-CCEEEEEeCCEEEEe
Q 001980 286 ---VGRTTVVV--AHRLSTIRN-VDTVAVIQQGQVVET 317 (987)
Q Consensus 286 ---~~~tvi~v--tH~~~~~~~-~d~i~~l~~G~i~~~ 317 (987)
...+++++ ||....+.. ++++..++.+.++..
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 22344555 888766654 565555566666653
No 284
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.76 E-value=3.7e-10 Score=130.69 Aligned_cols=158 Identities=20% Similarity=0.211 Sum_probs=96.6
Q ss_pred eeeEEEeCCcEEEEEcCCCCChHHHHHHHhc--cCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccc---c---
Q 001980 765 DFNLRIRAGQSQALVGASGSGKSSVIALIER--FYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA---S--- 836 (987)
Q Consensus 765 ~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r--l~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~g---T--- 836 (987)
.+++++.++..+.|+|.|||||||+++.|.. ++.++.|++.+.++|.+...+..+.. =|+++.. .
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence 4778888999999999999999999998876 67777788888888887655544431 1333210 0
Q ss_pred HHHHhccCCCCCCHHHH---HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH----------HHHHHHccCCC
Q 001980 837 IFDNIAYGKEGATEAEV---VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI----------AIARAVLKNPA 903 (987)
Q Consensus 837 IreNL~~~~~~~sd~ei---~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl----------aLARAllr~p~ 903 (987)
..+.|.. ..+|+ .+.++..++.++-. |+..+. ..+|+||+|+. ++|+++-..|.
T Consensus 232 a~~~L~~-----~~~EmerR~~ll~~~Gv~~i~~-----yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 232 AANALRW-----CVNEMERRYKLMSALGVRNLAG-----YNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHTTCSSHHH-----HHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHcCCccHHH-----HHHHHH---HHhhcCCcccccccccccchhccccccccCCc
Confidence 1112210 01111 23333444333211 111111 13677887752 46777788898
Q ss_pred -EEEEeCCCCCCCHHHHHHHHHHHHHH---cC--CCeEEEEecCch
Q 001980 904 -ILLLDEATSALDAESECVLQEALERL---MR--GRTTVLVAHRLS 943 (987)
Q Consensus 904 -ILlLDEaTS~LD~~te~~I~~~l~~~---~~--~~TvI~IaHRl~ 943 (987)
++++||+++.+|... ..+.+.|.+. -+ |.++|++|||++
T Consensus 299 ivlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 789999999998432 3344444322 22 779999999998
No 285
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.75 E-value=6.9e-10 Score=112.66 Aligned_cols=128 Identities=23% Similarity=0.369 Sum_probs=64.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccCC-------------CCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHH
Q 001980 773 GQSQALVGASGSGKSSVIALIERFYD-------------PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIre 839 (987)
|+.++|+||||||||||+++|.++++ |..|++ +|.++...+.+.++..+ .|+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 57899999999999999999999998 888885 89888877777766543 3666677677666
Q ss_pred HhccCCCCCCHHHHHHHHHHcC---c------hhhHhh--------------CCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 840 NIAYGKEGATEAEVVEAARAAN---V------HGFVSA--------------LPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 840 NL~~~~~~~sd~ei~~al~~a~---l------~~~i~~--------------lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
|+ ++.+ .+++.++++.-. + ...+.. -++.+...+.++|..-....+||++-|+
T Consensus 76 ~~-yg~~---~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~ 151 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ 151 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC--------------------------
T ss_pred ee-ccCc---HHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 65 4432 334444443310 0 000111 1245666677778777778888999988
Q ss_pred HHc-----cCCCEEEEeC
Q 001980 897 AVL-----KNPAILLLDE 909 (987)
Q Consensus 897 All-----r~p~ILlLDE 909 (987)
.-+ +.++.+|..+
T Consensus 152 ~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 152 AELAYAETGAHDKVIVND 169 (186)
T ss_dssp -------CCCCSEEEECS
T ss_pred HHHHhhcccCCcEEEECc
Confidence 766 4567766654
No 286
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.75 E-value=8.7e-12 Score=135.43 Aligned_cols=132 Identities=17% Similarity=0.248 Sum_probs=88.3
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 001980 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 180 (987)
+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|+++.. .|.|.+++.++........++.+++
T Consensus 51 ~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 34555555542 34789999999999 99999999999999999999885 7899999876644333333456777
Q ss_pred EcCCCC-Cchh-cHHHHH-hcCCCCCC-----HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 181 VNQEPA-LFAT-TILENI-LYGKPEAT-----MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 181 v~Q~~~-l~~~-tv~eni-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
++|++. .++. ++.||+ .++..... .++..+. +...+ ..|||||+||+.+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH-----HHHHH---------------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEE
Confidence 888753 3333 666776 33321100 0111111 11111 1489999999999999
Q ss_pred hccCCCE
Q 001980 253 MLKNPKI 259 (987)
Q Consensus 253 l~~~~~i 259 (987)
+..+|++
T Consensus 184 ~t~~p~~ 190 (278)
T 1iy2_A 184 ATNRPDI 190 (278)
T ss_dssp EESCTTS
T ss_pred ecCCchh
Confidence 9999976
No 287
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.75 E-value=1.4e-09 Score=110.15 Aligned_cols=81 Identities=21% Similarity=0.318 Sum_probs=68.5
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCC-------------CCCceEEECCccCCCCCHHHHhcccEEEcccccccccc
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYD-------------PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAAS 836 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gT 836 (987)
..+|+.++|+||||||||||+++|.+.++ |..|+ +||+|..-++.+.+++.+ .|+.+++.++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~~ 90 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFGS 90 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEEE
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhhh
Confidence 34799999999999999999999999886 77887 899999999999998876 7999999999
Q ss_pred HHHHhccCCCCCCHHHHHHHHHH
Q 001980 837 IFDNIAYGKEGATEAEVVEAARA 859 (987)
Q Consensus 837 IreNL~~~~~~~sd~ei~~al~~ 859 (987)
+.+|. ||.+ .+.+.++++.
T Consensus 91 ~~~n~-YGt~---~~~v~~~l~~ 109 (197)
T 3ney_A 91 YQGNM-FGTK---FETVHQIHKQ 109 (197)
T ss_dssp ETTEE-EEEE---HHHHHHHHHT
T ss_pred hhcee-cccc---hhhHHHHHhc
Confidence 99996 7753 4555555543
No 288
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.75 E-value=2.4e-09 Score=110.21 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=57.8
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccc-cHHHHhc
Q 001980 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIA 842 (987)
Q Consensus 767 sl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~g-TIreNL~ 842 (987)
|+++++|+.+||+||||||||||+++|.++++ .+.+++.++...+....+..++|++|++.+|.. +..+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57789999999999999999999999999973 689999888877766668899999999988754 4555543
No 289
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.75 E-value=2.2e-11 Score=135.88 Aligned_cols=141 Identities=19% Similarity=0.193 Sum_probs=93.6
Q ss_pred cceeeeeEEEeCC-------cEEEEEcCCCCChHHHHHHHhccC----CCCCceEEECCccCCCCCHHHHhcccEEEccc
Q 001980 761 VVFKDFNLRIRAG-------QSQALVGASGSGKSSVIALIERFY----DPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 829 (987)
Q Consensus 761 ~vL~~vsl~I~~G-------e~vaIVG~sGsGKSTL~~lL~rl~----~p~~G~I~idG~di~~i~l~~lR~~i~~VpQd 829 (987)
.+++++++.|++| +.++|+||+|+|||||+++|.+.. .+.+|.+..++.|+..+.....+..|.+|+|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 5899999999987 889999999999999999999998 67788887777766432111124679999998
Q ss_pred cccccccHHHHhccCCCCC----------CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 830 PALFAASIFDNIAYGKEGA----------TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 830 p~lF~gTIreNL~~~~~~~----------sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
+.++. ++.+++....... ....+...+....+. +..+.. ..||+|+|||++++
T Consensus 112 ~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li--------~at~~~----~~Ls~~l~sR~~l~---- 174 (334)
T 1in4_A 112 HRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV--------GATTRS----GLLSSPLRSRFGII---- 174 (334)
T ss_dssp GGCCH-HHHHHHHHHHHTSCCCC---------------CCCEEE--------EEESCG----GGSCHHHHTTCSEE----
T ss_pred hhcCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE--------EecCCc----ccCCHHHHHhcCce----
Confidence 87765 7888774211000 001111111111110 122333 46999999998665
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLM 930 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~ 930 (987)
.+||+.+...+.+.|++..
T Consensus 175 ------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 175 ------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp ------------EECCCCCHHHHHHHHHHHH
T ss_pred ------------eeCCCCCHHHHHHHHHHHH
Confidence 7788888888888777654
No 290
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.74 E-value=6.8e-09 Score=125.77 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=66.3
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC--CCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhcc
Q 001980 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDP--TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAY 843 (987)
Q Consensus 767 sl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~ 843 (987)
|+.+++|.+++|+|++|+|||||++.|.+...+ ..|+| .+|.++.+......++.+++.+|.+.++..+++.||..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 456889999999999999999999999987765 67998 88999999999999999999999999998888888853
No 291
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.73 E-value=7.7e-09 Score=109.66 Aligned_cols=167 Identities=14% Similarity=0.126 Sum_probs=92.0
Q ss_pred cceeee-eEEEeCCcEEEEEcCCCCChHHHHH-HHhccCCCCCceEEECCccCCCCCHHHHh---cccEEEccccccccc
Q 001980 761 VVFKDF-NLRIRAGQSQALVGASGSGKSSVIA-LIERFYDPTAGKVMIDGKDIRRLNLKSLR---LKIGLVQQEPALFAA 835 (987)
Q Consensus 761 ~vL~~v-sl~I~~Ge~vaIVG~sGsGKSTL~~-lL~rl~~p~~G~I~idG~di~~i~l~~lR---~~i~~VpQdp~lF~g 835 (987)
+.|+.+ .--+++|+.++|+|++|||||||+. ++....+...+.+++++.. +.+.++ .++++.+|+....
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~~-- 83 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEEK-- 83 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHHH--
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhhC--
Confidence 356666 5679999999999999999999965 4455555545556666532 223332 3455555543110
Q ss_pred cHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCC
Q 001980 836 SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL--KNPAILLLDEATSA 913 (987)
Q Consensus 836 TIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll--r~p~ILlLDEaTS~ 913 (987)
.|+..... . ...+...+. .+..+-+. +....+.+..++.++ .+|+++++|++|+-
T Consensus 84 ---~~l~~~~~-~--------------~~~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 84 ---GMFAMVDA-F--------------TAGIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp ---TSEEEEEC-S--------------TTTTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred ---CcEEEEec-c--------------hhhcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 12211000 0 000000000 00001011 123344555555555 47999999999998
Q ss_pred C--CHHHHHHHHHHHHHHc--CCCeEEEEecCchh---------hhccCEEEEEeC
Q 001980 914 L--DAESECVLQEALERLM--RGRTTVLVAHRLST---------IRGVDCIGVVQD 956 (987)
Q Consensus 914 L--D~~te~~I~~~l~~~~--~~~TvI~IaHRl~t---------i~~~D~Iivl~~ 956 (987)
+ |+.........+.+.. .++|||+++|.... ...+|.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 7 5433333333343332 48999999997764 245799999964
No 292
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.73 E-value=3.4e-10 Score=115.40 Aligned_cols=140 Identities=20% Similarity=0.197 Sum_probs=76.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCC-----------CCceEEECCccCCC--CCHHHHhcccEEEccccccccc--cHHH
Q 001980 775 SQALVGASGSGKSSVIALIERFYDP-----------TAGKVMIDGKDIRR--LNLKSLRLKIGLVQQEPALFAA--SIFD 839 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p-----------~~G~I~idG~di~~--i~l~~lR~~i~~VpQdp~lF~g--TIre 839 (987)
+++|+|++|||||||++.|.+...+ ..|+|.++|.++.- ++....++..++++|...-..+ ++.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6999999999999999999998765 57899999976531 1111122233344432110000 1111
Q ss_pred HhccCCCCCCHHHH---HHHHHH-cCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 001980 840 NIAYGKEGATEAEV---VEAARA-ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 915 (987)
Q Consensus 840 NL~~~~~~~sd~ei---~~al~~-a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD 915 (987)
+... .+-+++ .+.++. .....-+.-.-...| |..-..+...+||++.++|+++++| ||++|
T Consensus 111 ~~~~----~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~D---------l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald 175 (191)
T 1oix_A 111 IAKH----LTYENVERWLKELRDHADSNIVIMLVGNKSD---------LRHLRAVPTDEARAFAEKNGLSFIE--TSALD 175 (191)
T ss_dssp TTCH----HHHHTHHHHHHHHHHHSCTTCEEEEEEECGG---------GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTT
T ss_pred CcCH----HHHHHHHHHHHHHHHhcCCCCcEEEEEECcc---------cccccccCHHHHHHHHHHcCCEEEE--EeCCC
Confidence 1100 000111 111111 000000000001111 1111123467899999999999999 99999
Q ss_pred HHHHHHHHHHHHHH
Q 001980 916 AESECVLQEALERL 929 (987)
Q Consensus 916 ~~te~~I~~~l~~~ 929 (987)
.+....+.+.|.+.
T Consensus 176 ~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 176 STNVEAAFQTILTE 189 (191)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999998888653
No 293
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.72 E-value=1.2e-11 Score=132.34 Aligned_cols=137 Identities=18% Similarity=0.252 Sum_probs=89.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
.+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|++... .|.+.++|.++........++.++
T Consensus 26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 345566666642 34789999999999 99999999999999999999875 789999887664333333344577
Q ss_pred EEcCCCC-Cchh-cHHHHH-hcCCCCC-----CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 180 LVNQEPA-LFAT-TILENI-LYGKPEA-----TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 180 ~v~Q~~~-l~~~-tv~eni-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
+++|+.. ..+. ++.||+ .++.... ..++..+. +...+ ..|||||+||+.+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHH---------------HHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEE
Confidence 7777753 3333 566666 3332110 00111111 11112 147899999999999
Q ss_pred HhccCCCEEEEeCC
Q 001980 252 AMLKNPKILLLDEA 265 (987)
Q Consensus 252 al~~~~~illlDEp 265 (987)
|+..+|++ +|++
T Consensus 159 a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 159 AATNRPDI--LDPA 170 (254)
T ss_dssp EEESCGGG--SCGG
T ss_pred EccCCchh--CCHH
Confidence 99999976 4544
No 294
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.72 E-value=5.3e-12 Score=141.94 Aligned_cols=166 Identities=15% Similarity=0.124 Sum_probs=107.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc------------CCCCCccEEEECCEeCCCCCH-HHHhcc---eEEEcCCCCC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIER------------FYDPNAGHVLLDNVDIKTLQL-RWLRDQ---IGLVNQEPAL 187 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g------------~~~~~~G~i~~~g~~~~~~~~-~~~~~~---i~~v~Q~~~l 187 (987)
++++|..++|+|+||+|||||+++|+| ...|+.|.+.++|..+..+.. ..-++. ..++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 567999999998743211100 000111 2466777765
Q ss_pred chh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccc----cCCCCCCChHHHHHHHHHHHhccCC--CEE
Q 001980 188 FAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV----GERGVQLSGGQKQRIAIARAMLKNP--KIL 260 (987)
Q Consensus 188 ~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~----~~~g~~LSgGqkqRialARal~~~~--~il 260 (987)
..+ |..|++ . .......+.+ +.+-..+ ......+||+. +| ++.
T Consensus 96 ~~~~s~~e~L-------~-~~fl~~ir~~----------d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 96 TKGASTGVGL-------G-NAFLSHVRAV----------DAIYQVVRAFDDAEIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CCCCCSSSSS-------C-HHHHHHHTTC----------SEEEEEEECCCTTCSSCCSSSS------------CHHHHHH
T ss_pred ccCCcHHHHH-------H-HHHHHHHHHH----------HHHHHHHhccccceeeeecccc------------Ccchhhh
Confidence 443 322221 0 1111111111 0111111 12233456653 89 999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhh-hC-CCeEEEEcCCCCcccc-CCEEE-EEeCC-EEEEecChH
Q 001980 261 LLDEATSALDAGSESIVQEALDRL-MV-GRTTVVVAHRLSTIRN-VDTVA-VIQQG-QVVETGTHE 321 (987)
Q Consensus 261 llDEpts~LD~~~~~~i~~~l~~~-~~-~~tvi~vtH~~~~~~~-~d~i~-~l~~G-~i~~~g~~~ 321 (987)
++|||+..+|+...+..++.+... .+ |+|++ +|.+..+.. ||++. +|++| +++..|+.+
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 999999999999988888888877 54 56653 999888765 79998 89999 887666543
No 295
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.71 E-value=2.9e-11 Score=131.34 Aligned_cols=137 Identities=19% Similarity=0.257 Sum_probs=97.5
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEE
Q 001980 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 825 (987)
Q Consensus 746 ~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~ 825 (987)
+++++...|. ...+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......++++..
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 3456666663 235899999999999 99999999999999999999885 7999999988766555566777888
Q ss_pred Eccccc-cc-cccHHHHhc-cCCCCC-----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 826 VQQEPA-LF-AASIFDNIA-YGKEGA-----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 826 VpQdp~-lF-~gTIreNL~-~~~~~~-----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
++|++. .+ .-++.||++ ++.... ..++..+.+. .++. .|||||+|+..+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~-----~ll~---------------~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLLV---------------EMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHH-----HHHH---------------HHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHH-----HHHH---------------HHhCCCCCCCEEEEE
Confidence 899864 33 335677774 221111 1112222211 1111 378999999999999
Q ss_pred HccCCCEEEEeCCC
Q 001980 898 VLKNPAILLLDEAT 911 (987)
Q Consensus 898 llr~p~ILlLDEaT 911 (987)
+..+|++ ||++.
T Consensus 184 ~t~~p~~--ld~~l 195 (278)
T 1iy2_A 184 ATNRPDI--LDPAL 195 (278)
T ss_dssp EESCTTS--SCHHH
T ss_pred ecCCchh--CCHhH
Confidence 9999987 67764
No 296
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.70 E-value=4.8e-10 Score=135.03 Aligned_cols=156 Identities=14% Similarity=0.132 Sum_probs=100.7
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCEeCCCCCHHHHhcceEEEcCCC---------
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA-GHVLLDNVDIKTLQLRWLRDQIGLVNQEP--------- 185 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~--------- 185 (987)
.+++++++.+.+|+.++|+||+|||||||+++|+|++++.. |.+.+++.+.... ...++|+||..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHH
Confidence 47899999999999999999999999999999999999887 8888887665443 23588887754
Q ss_pred -------------CCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 186 -------------ALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 186 -------------~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
|.+.. ++.+|+..+........+... ......+.+... +. -......+|+|++|++..++
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~----~~-~~~~~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDV----RH-DPFQSGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEE----CC-CCC----CCCCGGGGEECCH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceE----Ee-chhhcCCccccccccccCce
Confidence 22211 334444332110000000000 000011112111 00 11222459999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHh
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDR 283 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~ 283 (987)
....++.+|+|||.-. |++.....+.+.|.+
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999988 798888888888764
No 297
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.69 E-value=3.7e-09 Score=112.13 Aligned_cols=166 Identities=16% Similarity=0.141 Sum_probs=84.9
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCccHHHHHHHH-HcCCCCCccEEEECCEeCCCCCHHHHh---cceEEEcCCCCCchhc
Q 001980 117 IFRDF-SIFFPAGKTVAVVGGSGSGKSTVVSLI-ERFYDPNAGHVLLDNVDIKTLQLRWLR---DQIGLVNQEPALFATT 191 (987)
Q Consensus 117 ~l~~i-~l~i~~G~~~~ivG~sGsGKSTLl~~l-~g~~~~~~G~i~~~g~~~~~~~~~~~~---~~i~~v~Q~~~l~~~t 191 (987)
.|+++ .--+++|++++|+||+|||||||+..+ .+..+...+.+++++.. +...+. .++++.+|+..
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~----- 81 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYE----- 81 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHH-----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHh-----
Confidence 45655 556899999999999999999996544 44444444445554421 122111 12333332210
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCC
Q 001980 192 ILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML--KNPKILLLDEATSAL 269 (987)
Q Consensus 192 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~--~~~~illlDEpts~L 269 (987)
-.+|+.+-... . . .+...+. ....+.. -+....+....++.++ .+|+++++|+|++.+
T Consensus 82 ~~~~l~~~~~~-~-~-------------~~~~~~~-~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 82 EKGMFAMVDAF-T-A-------------GIGKSKE-YEKYIVH----DLTDIREFIEVLRQAIRDINAKRVVVDSVTTLY 141 (247)
T ss_dssp HHTSEEEEECS-T-T-------------TTCC--C-CCSCBCS----CCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGT
T ss_pred hCCcEEEEecc-h-h-------------hcccccc-ccccccc----CccCHHHHHHHHHHHHHHhCCCEEEECCchHhh
Confidence 00011110000 0 0 0000000 0000001 1122333333344443 479999999999988
Q ss_pred --ChHHHHHHHHHHHhhh--CCCeEEEEcCCCCc--------c-ccCCEEEEEeC
Q 001980 270 --DAGSESIVQEALDRLM--VGRTTVVVAHRLST--------I-RNVDTVAVIQQ 311 (987)
Q Consensus 270 --D~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~--------~-~~~d~i~~l~~ 311 (987)
|+.....+...+.++. .+.|+|+++|.... + ..+|.|+.|+.
T Consensus 142 ~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 142 INKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 5544444444454442 48899999998764 2 34799999864
No 298
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.67 E-value=5.9e-08 Score=108.04 Aligned_cols=143 Identities=17% Similarity=0.266 Sum_probs=85.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCce-EEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCC
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK-VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG 847 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~-I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~ 847 (987)
-+++|+.+.|.|++|||||||+..+..-....+|. ++++.... .+. ...+++++-+|+..++ .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~--~~~-~~a~~lG~~~~~l~i~-----------~-- 120 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA--LDP-EYAKKLGVDTDSLLVS-----------Q-- 120 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCH-HHHHHTTCCGGGCEEE-----------C--
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--cCH-HHHHHcCCCHHHeEEe-----------c--
Confidence 58899999999999999999987777544333333 44544211 111 1112222221111100 0
Q ss_pred CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC--CCEEEEeCCCCCCC----------
Q 001980 848 ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN--PAILLLDEATSALD---------- 915 (987)
Q Consensus 848 ~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~--p~ILlLDEaTS~LD---------- 915 (987)
| .+ -.|.+.++++++++ |+++|+||+|+-+.
T Consensus 121 ----------------------~-------------~~--~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd 163 (349)
T 2zr9_A 121 ----------------------P-------------DT--GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGD 163 (349)
T ss_dssp ----------------------C-------------SS--HHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC---
T ss_pred ----------------------C-------------CC--HHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccccc
Confidence 0 11 13456688888865 99999999999983
Q ss_pred H---HHHHHHHHHHHHH-----cCCCeEEEEecCch----------------hh-hccCEEEEEeCCEEEEecC
Q 001980 916 A---ESECVLQEALERL-----MRGRTTVLVAHRLS----------------TI-RGVDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 916 ~---~te~~I~~~l~~~-----~~~~TvI~IaHRl~----------------ti-~~~D~Iivl~~G~ive~Gt 964 (987)
. ...+.+.+.++++ ..++|||+++|-.. .+ ..||.++.+..+++...|+
T Consensus 164 ~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 164 SHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2 1222344444443 13899999999543 13 3479999998877655444
No 299
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.67 E-value=5.2e-10 Score=116.39 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=51.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-------
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL------- 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~------- 171 (987)
.|+++|+...|+ . ++++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~--------~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE--------E--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC--------C--EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888765542 1 566666 8999999999999999999999999999999999988743322
Q ss_pred -HHHhcceEEEcCC
Q 001980 172 -RWLRDQIGLVNQE 184 (987)
Q Consensus 172 -~~~~~~i~~v~Q~ 184 (987)
...+..++|++|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2235679999984
No 300
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.66 E-value=2.4e-08 Score=111.20 Aligned_cols=143 Identities=19% Similarity=0.327 Sum_probs=80.7
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEA 203 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 203 (987)
-+++|+++.|.||+|||||||+..++.......|. +.|+.-+..+ +....+. +|..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~-------------------vlyi~~E~~~-~~~~a~~--lG~~-- 112 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI-------------------AAFIDAEHAL-DPEYAKK--LGVD-- 112 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------------------EEEEESSCCC-CHHHHHH--TTCC--
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe-------------------EEEEECCCCc-CHHHHHH--cCCC--
Confidence 47899999999999999999988887655443333 3343333211 0000000 0000
Q ss_pred CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC--CCEEEEeCCCCCC----------Ch
Q 001980 204 TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN--PKILLLDEATSAL----------DA 271 (987)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~--~~illlDEpts~L----------D~ 271 (987)
.+.+ .+-. ..++ .|-+.+++++.++ |+++++|++++.+ |+
T Consensus 113 -----------------~~~l------~i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 113 -----------------TDSL------LVSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp -----------------GGGC------EEEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred -----------------HHHe------EEec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 0000 0000 1122 2345678888755 9999999999998 33
Q ss_pred ---HHHHHHHHHHHhh----h-CCCeEEEEcCCCCc----------------ccc-CCEEEEEeCCEEEEec
Q 001980 272 ---GSESIVQEALDRL----M-VGRTTVVVAHRLST----------------IRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 272 ---~~~~~i~~~l~~~----~-~~~tvi~vtH~~~~----------------~~~-~d~i~~l~~G~i~~~g 318 (987)
...+.+.+.+.++ . .+.|+|+++|-... +++ ||.++.++.+++...|
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 1222344444443 2 38999999996531 333 7888888777665444
No 301
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.66 E-value=1.3e-09 Score=110.51 Aligned_cols=43 Identities=30% Similarity=0.536 Sum_probs=33.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC-------------CCccEEEECCEeCCCCCHH
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFYD-------------PNAGHVLLDNVDIKTLQLR 172 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~~-------------~~~G~i~~~g~~~~~~~~~ 172 (987)
|++++|+||||||||||+++|+|+++ |..|++ +|.++...+..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~ 56 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVD 56 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHH
Confidence 67899999999999999999999998 666764 66554444433
No 302
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.66 E-value=3.1e-09 Score=108.27 Aligned_cols=141 Identities=18% Similarity=0.137 Sum_probs=75.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC-----------CccEEEECCEeCCC--CCHHHHhcceEEEcCCCCCchh--cHHH
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDP-----------NAGHVLLDNVDIKT--LQLRWLRDQIGLVNQEPALFAT--TILE 194 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~-----------~~G~i~~~g~~~~~--~~~~~~~~~i~~v~Q~~~l~~~--tv~e 194 (987)
+++|+|+||||||||++.++|...+ +.|+|.++|.++.- ++....++..++++|...-... ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57899999976521 1111111112222221000000 0100
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhHHHHHHh-CCCCCc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChH
Q 001980 195 NILYGKPEATMAEVEAAASAANAHSFITL-LPNGYS-TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272 (987)
Q Consensus 195 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~-t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~ 272 (987)
+ ............ ...+.. .+.... -.++.+ ..|..-..++..+||+++.+|+++++| ||++|..
T Consensus 111 ~-------~~~~s~~~~~~~---~~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~ 177 (191)
T 1oix_A 111 I-------AKHLTYENVERW---LKELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST 177 (191)
T ss_dssp T-------TCHHHHHTHHHH---HHHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred C-------cCHHHHHHHHHH---HHHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence 0 011111110000 001111 111110 112221 122222234578899999999999999 9999999
Q ss_pred HHHHHHHHHHh
Q 001980 273 SESIVQEALDR 283 (987)
Q Consensus 273 ~~~~i~~~l~~ 283 (987)
..+.+++.|.+
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99988888764
No 303
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.65 E-value=4.3e-11 Score=128.10 Aligned_cols=139 Identities=19% Similarity=0.242 Sum_probs=97.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
.+++++...|. ...+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......++++.
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 34566666663 235899999999999 99999999999999999999875 799999998876555555667788
Q ss_pred EEccccc-cc-cccHHHHhc-cCCCCC-----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 825 LVQQEPA-LF-AASIFDNIA-YGKEGA-----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 825 ~VpQdp~-lF-~gTIreNL~-~~~~~~-----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
.++|+.. .+ .-++.||++ ++.... ..++..+.+. .++. .|||||+|+..+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~-----~ll~---------------~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLLV---------------EMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHH-----HHHH---------------HHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHH-----HHHH---------------HHhCCCCCCCEEEE
Confidence 8888764 22 335667773 221110 1112221111 1111 37899999999999
Q ss_pred HHccCCCEEEEeCCCC
Q 001980 897 AVLKNPAILLLDEATS 912 (987)
Q Consensus 897 Allr~p~ILlLDEaTS 912 (987)
|+..+|++ ||++.-
T Consensus 159 a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 159 AATNRPDI--LDPALL 172 (254)
T ss_dssp EEESCGGG--SCGGGG
T ss_pred EccCCchh--CCHHHc
Confidence 99999987 788765
No 304
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.63 E-value=2.2e-10 Score=120.23 Aligned_cols=128 Identities=17% Similarity=0.196 Sum_probs=86.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC---CCCccEEEE--------CCEeCCC-CCHHHHhcceEEEcCCCC------Cc
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFY---DPNAGHVLL--------DNVDIKT-LQLRWLRDQIGLVNQEPA------LF 188 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~---~~~~G~i~~--------~g~~~~~-~~~~~~~~~i~~v~Q~~~------l~ 188 (987)
.+.+++|+|++||||||++++|.+.+ .++.|.+.. +|.++.+ ....++++++++++|++. +.
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35689999999999999999999876 678899877 6776653 344567888999999763 33
Q ss_pred hhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccc-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 001980 189 ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV-GERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT 266 (987)
Q Consensus 189 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~-~~~g~~LSgGqkqRialARal~~~~~illlDEpt 266 (987)
..++.+++. .+++..++..+..++.+.....+..+.+ ..+|.-++|+ .++++++.+++++++.++.
T Consensus 84 ~~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 84 GEDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp TEECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred CeeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 447777763 2455555555544444443322322222 2345567776 4566778889999987764
No 305
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.63 E-value=7.3e-10 Score=128.21 Aligned_cols=158 Identities=22% Similarity=0.239 Sum_probs=92.8
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCch---hcH--
Q 001980 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIER--FYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA---TTI-- 192 (987)
Q Consensus 120 ~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g--~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~---~tv-- 192 (987)
.+++.+.++..+.|.|++||||||+++.|.. ++.++.|++.+.+.|.+......+. .-|++.. ...
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-------~lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-------GIPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-------TCTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-------cCCcccceeecCHHH
Confidence 4788889999999999999999999999876 6667778888777776543322221 1122211 011
Q ss_pred -HHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccC---CCCCCChHHHHHH----------HHHHHhccCCC
Q 001980 193 -LENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGE---RGVQLSGGQKQRI----------AIARAMLKNPK 258 (987)
Q Consensus 193 -~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~---~g~~LSgGqkqRi----------alARal~~~~~ 258 (987)
.+.+... .+++. ++ .+.+... |....-+- ....+||||+||. ++|+++...|.
T Consensus 232 a~~~L~~~-----~~Eme---rR---~~ll~~~--Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 232 AANALRWC-----VNEME---RR---YKLMSAL--GVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHHH-----HHHHH---HH---HHHHHHT--TCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHHH-----HHHHH---HH---HHHHHHc--CCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCc
Confidence 1111000 00111 11 1222222 33221110 0124788888753 46777888898
Q ss_pred -EEEEeCCCCCCChHHHHHHHHHHHhh----h-CCCeEEEEcCCCC
Q 001980 259 -ILLLDEATSALDAGSESIVQEALDRL----M-VGRTTVVVAHRLS 298 (987)
Q Consensus 259 -illlDEpts~LD~~~~~~i~~~l~~~----~-~~~tvi~vtH~~~ 298 (987)
++++||+++.+|... ..+.+.+.++ + .|.++|++|||+.
T Consensus 299 ivlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 899999999888432 3344444433 2 2789999999998
No 306
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.61 E-value=9.8e-10 Score=114.30 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=52.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH-------
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL------- 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l------- 816 (987)
.|+++|+...|. . ++++++ +.++|+||||||||||+++|.+++.|++|.|.++|.++...+.
T Consensus 9 ~l~l~~~~~~~~--------~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE--------E--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC--------C--EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888865441 1 566677 8999999999999999999999999999999999999844332
Q ss_pred -HHHhcccEEEccc
Q 001980 817 -KSLRLKIGLVQQE 829 (987)
Q Consensus 817 -~~lR~~i~~VpQd 829 (987)
..+|..+++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2346789999985
No 307
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.60 E-value=1.4e-09 Score=116.01 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=61.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHH---cCCCCCccEEE--------ECCEeCC-CCCHHHHhcceEEEcCCC------CC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIE---RFYDPNAGHVL--------LDNVDIK-TLQLRWLRDQIGLVNQEP------AL 187 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~---g~~~~~~G~i~--------~~g~~~~-~~~~~~~~~~i~~v~Q~~------~l 187 (987)
++|++++|+|||||||||++++|+ |+..|++|.+. .+|.++. ......+++++++++|++ ++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 8999884 446678888999999754 34
Q ss_pred chhcHHHHHh
Q 001980 188 FATTILENIL 197 (987)
Q Consensus 188 ~~~tv~eni~ 197 (987)
+..++.+||.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 4557777765
No 308
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.60 E-value=1.8e-09 Score=129.91 Aligned_cols=157 Identities=13% Similarity=0.171 Sum_probs=103.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC-ceEEECCccCCCCCHHHHhcccEEEccccc--------
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA-GKVMIDGKDIRRLNLKSLRLKIGLVQQEPA-------- 831 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~-G~I~idG~di~~i~l~~lR~~i~~VpQdp~-------- 831 (987)
.+++++++.+++|+.+.|+||+|+|||||+++|.++..+.. |.+.+++.+.... ...++++||...
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHH
Confidence 58999999999999999999999999999999999999887 8899988776643 356888887541
Q ss_pred --------------cc-cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 832 --------------LF-AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 832 --------------lF-~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
.| ..++.+|+...........+... ......+++ +.++..- .....+|+|++|++..++
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~----G~~~~~~-~~~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALL----GDVRHDP-FQSGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHH----CEECCCC-C----CCCCGGGGEECCH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcC----ceEEech-hhcCCccccccccccCce
Confidence 11 12333344321110000000000 000001111 1111111 111349999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERL 929 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~ 929 (987)
....++.+|+|||... |++.....+.+.|++.
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~~ 228 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQEK 228 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHHS
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHcC
Confidence 9999999999999998 8999999999988753
No 309
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.59 E-value=1.1e-07 Score=110.50 Aligned_cols=177 Identities=11% Similarity=0.117 Sum_probs=108.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc-eEEECCccCCCCCHHHHhccc-EEEccccccccccHH
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG-KVMIDGKDIRRLNLKSLRLKI-GLVQQEPALFAASIF 838 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~i~l~~lR~~i-~~VpQdp~lF~gTIr 838 (987)
+.|++++.-+++|+.+.|.||+|+|||||+..+.+...+..| .+.+-+.. .+...++.++ +....-+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~-------~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNIN-------A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCC-------H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCC-------H
Confidence 478888888999999999999999999999999887766445 56555433 3445555443 1110000 0
Q ss_pred HHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH
Q 001980 839 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL--KNPAILLLDEATSALDA 916 (987)
Q Consensus 839 eNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll--r~p~ILlLDEaTS~LD~ 916 (987)
+++..+ ..++++.....+.. +.+...|- .+.+ ...+|.+|.+ +.||++. .+|+++|+|+++.-.+.
T Consensus 261 ~~l~~g--~l~~~~~~~~~~a~---~~l~~~~l----~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTG--KLTPEDWGKLTMAM---GSLSNAGI----YIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTS--CCCHHHHHHHHHHH---HHHHSSCE----EEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcC--CCCHHHHHHHHHHH---HHHhcCCE----EEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 112112 23454433222211 11221111 1111 1368999876 6677776 57999999999997743
Q ss_pred H--------HHHHHHHHHHHHc--CCCeEEEEec-----------Cch--------hh-hccCEEEEEeCCEE
Q 001980 917 E--------SECVLQEALERLM--RGRTTVLVAH-----------RLS--------TI-RGVDCIGVVQDGRI 959 (987)
Q Consensus 917 ~--------te~~I~~~l~~~~--~~~TvI~IaH-----------Rl~--------ti-~~~D~Iivl~~G~i 959 (987)
. .-..+.+.|+.+. .++|||+++| |+. .+ .+||.|++|..++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1 1244555565543 3899999999 132 33 35899999987654
No 310
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.59 E-value=8.9e-09 Score=103.79 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=63.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCC-CCceEE----------ECCccCCCCCHHHHhcccEEEccccccccccHHHH
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDP-TAGKVM----------IDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-~~G~I~----------idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreN 840 (987)
+|+.++|+||||||||||+++|.+++++ ..|.|. +||++...++.+.+++. ++|+.+++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 6899999999999999999999999863 344443 57888888888888774 578999999999999
Q ss_pred hccCCCCCCHHHHHHHHH
Q 001980 841 IAYGKEGATEAEVVEAAR 858 (987)
Q Consensus 841 L~~~~~~~sd~ei~~al~ 858 (987)
. ++. +.+.+.++++
T Consensus 81 ~-yg~---~~~~i~~~l~ 94 (180)
T 1kgd_A 81 M-YGT---KLETIRKIHE 94 (180)
T ss_dssp E-EEE---EHHHHHHHHH
T ss_pred c-ccc---cHHHHHHHHH
Confidence 4 554 3455665554
No 311
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.56 E-value=9.2e-09 Score=106.15 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=44.3
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK 845 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~ 845 (987)
-++++|++++|+|++||||||+++.|.+.++ .+.+++||+++|++ +|+..+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~ 67 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDK 67 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccc
Confidence 3578899999999999999999999999875 48899999999976 6665443
No 312
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.54 E-value=2.1e-08 Score=116.42 Aligned_cols=177 Identities=13% Similarity=0.142 Sum_probs=105.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCEeCCCCCHHHHhcce-EEEcCCCCCchhcHH
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-HVLLDNVDIKTLQLRWLRDQI-GLVNQEPALFATTIL 193 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~i-~~v~Q~~~l~~~tv~ 193 (987)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+ .+...+..++ +....- . .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~------~-~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNI------N-A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTC------C-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCC------C-H
Confidence 468888877999999999999999999999999987766445 45443322 2223222221 100000 0 0
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCh
Q 001980 194 ENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML--KNPKILLLDEATSALDA 271 (987)
Q Consensus 194 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~--~~~~illlDEpts~LD~ 271 (987)
+.+..|. ...++....... .+.+...| -.+.. ...+|++|.+ +.+|.+. .+|+++++|+++...++
T Consensus 261 ~~l~~g~--l~~~~~~~~~~a---~~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTGK--LTPEDWGKLTMA---MGSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTSC--CCHHHHHHHHHH---HHHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcCC--CCHHHHHHHHHH---HHHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 1222221 223332222221 12233222 12222 3478999986 5667766 58999999999998753
Q ss_pred H--------HHHHHHHHHHhhh--CCCeEEEEcC---------C--CC--------cccc-CCEEEEEeCCEE
Q 001980 272 G--------SESIVQEALDRLM--VGRTTVVVAH---------R--LS--------TIRN-VDTVAVIQQGQV 314 (987)
Q Consensus 272 ~--------~~~~i~~~l~~~~--~~~tvi~vtH---------~--~~--------~~~~-~d~i~~l~~G~i 314 (987)
. ....+.+.|+.+. .+.+||+++| + +. .+.. ||.|++|..++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2 2245556666654 2899999999 2 32 3444 899999986643
No 313
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.47 E-value=1.3e-09 Score=122.19 Aligned_cols=136 Identities=13% Similarity=0.155 Sum_probs=86.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHH
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreN 840 (987)
++|+++|+.+++|+.++|+||+|||||||+++|.+.+ +|.+..-. .. .+.++..++++||...+| .++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~---~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LP---LDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SC---TTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--cc---chhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999864 67776511 11 122334578889987643 333
Q ss_pred hccCCC---C---CC----HHHHHHHHHH---cCch----hhHhh-C-CCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 841 IAYGKE---G---AT----EAEVVEAARA---ANVH----GFVSA-L-PNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 841 L~~~~~---~---~s----d~ei~~al~~---a~l~----~~i~~-l-p~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
++.... + .. +..+.+.+.- +.+. +.+.. + |..+ ..+-..+++|.+||++.+.+++.+
T Consensus 225 ~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~l----d~~~~~l~~~~~~rl~~~~~l~~~ 300 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIV----TMNEYSVPKTLQARFVKQIDFRPK 300 (377)
T ss_dssp CCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEE----EECSCCCCHHHHTTEEEEEECCCC
T ss_pred HHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCccc----ChhHHhhcHHHHHHHhhhhccCCC
Confidence 332211 0 01 0112222210 0000 00000 0 2222 334456899999999999888999
Q ss_pred CCEEE-EeCCCC
Q 001980 902 PAILL-LDEATS 912 (987)
Q Consensus 902 p~ILl-LDEaTS 912 (987)
|++++ ||+|+.
T Consensus 301 pDLliyLd~~~~ 312 (377)
T 1svm_A 301 DYLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHHTCTH
T ss_pred CCeEEEEeCCHH
Confidence 99988 999987
No 314
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.43 E-value=1.2e-08 Score=103.41 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=60.2
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-------------CCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCc
Q 001980 122 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-------------PNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF 188 (987)
Q Consensus 122 ~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-------------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 188 (987)
|+...+|++++|+||||||||||++.|++.++ |..|+ ++|.+....+.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 44456899999999999999999999999886 67787 689888888888877765 6888888
Q ss_pred hhcHHHHHhcCCC
Q 001980 189 ATTILENILYGKP 201 (987)
Q Consensus 189 ~~tv~eni~~~~~ 201 (987)
.+++.+| .+|.+
T Consensus 88 ~~~~~~n-~YGt~ 99 (197)
T 3ney_A 88 FGSYQGN-MFGTK 99 (197)
T ss_dssp EEEETTE-EEEEE
T ss_pred hhhhhce-ecccc
Confidence 8999999 47754
No 315
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.42 E-value=3.5e-08 Score=100.98 Aligned_cols=138 Identities=18% Similarity=0.184 Sum_probs=73.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccC-----CCC------CceEEECCccCC-----CCCHHHHhcccEEEccccc--c--cc
Q 001980 775 SQALVGASGSGKSSVIALIERFY-----DPT------AGKVMIDGKDIR-----RLNLKSLRLKIGLVQQEPA--L--FA 834 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~-----~p~------~G~I~idG~di~-----~i~l~~lR~~i~~VpQdp~--l--F~ 834 (987)
+++|+|++|||||||++.|.+.. .|+ .|.|.++|.++. .-+.+..|+......|+.. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 69999999999999999999974 233 578999997652 2223333333333333321 1 22
Q ss_pred ccHHHHhccCCCCCCHHHHHHHHHHcC-chhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q 001980 835 ASIFDNIAYGKEGATEAEVVEAARAAN-VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913 (987)
Q Consensus 835 gTIreNL~~~~~~~sd~ei~~al~~a~-l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~ 913 (987)
.+-..... .-......++... ...-+.-.-...|-. + -... ....||++.++|+++++| ||+
T Consensus 87 ~~~~~s~~------~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~--~-~~~~------~~~~a~~l~~~~~~~~~d--~Sa 149 (199)
T 2f9l_A 87 IAKHLTYE------NVERWLKELRDHADSNIVIMLVGNKSDLR--H-LRAV------PTDEARAFAEKNNLSFIE--TSA 149 (199)
T ss_dssp TTCHHHHH------THHHHHHHHHHHSCTTCEEEEEEECTTCG--G-GCCS------CHHHHHHHHHHTTCEEEE--CCT
T ss_pred CcCHHHHH------HHHHHHHHHHHhcCCCCeEEEEEECcccc--c-ccCc------CHHHHHHHHHHcCCeEEE--EeC
Confidence 22111100 0001111111110 000000000111110 0 0111 235689999999999999 999
Q ss_pred CCHHHHHHHHHHHHHH
Q 001980 914 LDAESECVLQEALERL 929 (987)
Q Consensus 914 LD~~te~~I~~~l~~~ 929 (987)
+|...-..+.+.|.+.
T Consensus 150 l~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 150 LDSTNVEEAFKNILTE 165 (199)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999888888777654
No 316
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.39 E-value=1.2e-07 Score=96.92 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=31.1
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhh
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL 284 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~ 284 (987)
...||+++.+|++.++| ||++|....+.+++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45699999999999999 9999999888888877653
No 317
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.37 E-value=5.2e-08 Score=100.61 Aligned_cols=80 Identities=24% Similarity=0.195 Sum_probs=59.2
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCCC-CCceEE----------ECCccCCCCCHHHHhcccEEEccccccccccHHH
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYDP-TAGKVM----------IDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-~~G~I~----------idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIre 839 (987)
++|+.++|+||||||||||++.|.+.+++ ..+.+. .+|++...++.+.+++.+ .|+.+++.+++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 57999999999999999999999999976 333332 467777777777777765 6778888888888
Q ss_pred HhccCCCCCCHHHHHHHH
Q 001980 840 NIAYGKEGATEAEVVEAA 857 (987)
Q Consensus 840 NL~~~~~~~sd~ei~~al 857 (987)
|. |+. +.+.+.+.+
T Consensus 83 ~~-yg~---~~~~i~~~l 96 (208)
T 3tau_A 83 NY-YGT---PLEYVEEKL 96 (208)
T ss_dssp EE-EEE---EHHHHHHHH
T ss_pred cc-CCC---cHHHHHHHH
Confidence 84 553 344444444
No 318
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.37 E-value=7.2e-08 Score=116.81 Aligned_cols=135 Identities=18% Similarity=0.133 Sum_probs=94.8
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcC
Q 001980 122 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP--NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG 199 (987)
Q Consensus 122 ~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~ 199 (987)
++++++|..++|+|++|+|||||++.|++...+ ..|+| .+|..+.++...+.++.+++.+|.+.++..+++.||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456788999999999999999999999987665 67888 788888888888888899999998877766655555421
Q ss_pred CCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHH
Q 001980 200 KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279 (987)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~ 279 (987)
.-..+. + . ......-..+..++++| |+.++++.++..+..
T Consensus 82 pG~~~f----------------------------------~-~----~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~ 121 (665)
T 2dy1_A 82 PGYGDF----------------------------------V-G----EIRGALEAADAALVAVS-AEAGVQVGTERAWTV 121 (665)
T ss_dssp CCSGGG----------------------------------H-H----HHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHH
T ss_pred CCccch----------------------------------H-H----HHHHHHhhcCcEEEEEc-CCcccchhHHHHHHH
Confidence 100000 0 0 00111113466788889 999999988755544
Q ss_pred HHHhhhCCCeEEEEcCCCCcc
Q 001980 280 ALDRLMVGRTTVVVAHRLSTI 300 (987)
Q Consensus 280 ~l~~~~~~~tvi~vtH~~~~~ 300 (987)
+. . .+.++|++.|+++..
T Consensus 122 ~~-~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 AE-R--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HH-H--TTCCEEEEEECGGGC
T ss_pred HH-H--ccCCEEEEecCCchh
Confidence 32 2 378899999987754
No 319
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.37 E-value=1.9e-09 Score=120.70 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=85.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHH
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILEN 195 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 195 (987)
.+++++++.+++|++++|+||+|||||||+++|+|. .+|.+..-. ... ..++..+++++|.+.++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPL---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCT---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccc---hhHHHHHHHhcchhHHH----HHH
Confidence 478999999999999999999999999999999995 467776511 111 11223478888887542 222
Q ss_pred HhcCCC------CCCHHHHHHHHHHHhHHHHHHh-----------------CCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 196 ILYGKP------EATMAEVEAAASAANAHSFITL-----------------LPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 196 i~~~~~------~~~~~~~~~~~~~~~~~~~~~~-----------------~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
+.+... .... .. ....+.+.+.. ++.| .+..+...+++|.+||++.+.+
T Consensus 225 ~~~~~~~~r~l~~~~~--~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~ 296 (377)
T 1svm_A 225 VKGTGGESRDLPSGQG--IN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQID 296 (377)
T ss_dssp CCCSTTTTTTCCCCSH--HH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEE
T ss_pred HHHHHHHHhhccccCc--ch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhc
Confidence 222211 0011 10 01112222220 1111 2344556799999999999988
Q ss_pred hccCCCEEE-EeCCCC
Q 001980 253 MLKNPKILL-LDEATS 267 (987)
Q Consensus 253 l~~~~~ill-lDEpts 267 (987)
++.+|++++ ||+|+.
T Consensus 297 l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 297 FRPKDYLKHCLERSEF 312 (377)
T ss_dssp CCCCHHHHHHHHTCTH
T ss_pred cCCCCCeEEEEeCCHH
Confidence 999999988 999987
No 320
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.34 E-value=4.9e-07 Score=104.33 Aligned_cols=113 Identities=21% Similarity=0.345 Sum_probs=74.3
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENI 196 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni 196 (987)
.++++++.+++| +.|+||+|+|||||++++++.... .+-++. + .+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f~~is-------~--~~-- 84 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PFFHIS-------G--SD-- 84 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CEEEEE-------G--GG--
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------CeeeCC-------H--HH--
Confidence 566777777777 889999999999999999985421 011110 0 00
Q ss_pred hcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC----------
Q 001980 197 LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT---------- 266 (987)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpt---------- 266 (987)
+...+ +| .|++++|-.+++|....|.|+++||+-
T Consensus 85 -----------------------~~~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 85 -----------------------FVELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp -----------------------TTTCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred -----------------------HHHHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 00000 11 278899999999999999999999993
Q ss_pred CCCChHHHHHHHHHHHhhh-----CCCeEEEEcCCCCcc
Q 001980 267 SALDAGSESIVQEALDRLM-----VGRTTVVVAHRLSTI 300 (987)
Q Consensus 267 s~LD~~~~~~i~~~l~~~~-----~~~tvi~vtH~~~~~ 300 (987)
++.|....+.+.+.+..+. .+..+|.+||+++.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 4566665555555554432 356888999998654
No 321
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.32 E-value=9.6e-08 Score=96.18 Aligned_cols=99 Identities=21% Similarity=0.268 Sum_probs=63.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCc--cCCCCCHH----HHhcccEEEccccc------
Q 001980 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK--DIRRLNLK----SLRLKIGLVQQEPA------ 831 (987)
Q Consensus 764 ~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~--di~~i~l~----~lR~~i~~VpQdp~------ 831 (987)
+++++.+.+| .++|+|+||||||||+.+|..+..+..|...-.+. ++-.-+.. ..+..|.++.|+|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 7899999999 99999999999999999999988877765433331 11111110 23567999999863
Q ss_pred ----cccccHHHH----hccCCCCCCHHHHHHHHHHcCch
Q 001980 832 ----LFAASIFDN----IAYGKEGATEAEVVEAARAANVH 863 (987)
Q Consensus 832 ----lF~gTIreN----L~~~~~~~sd~ei~~al~~a~l~ 863 (987)
.+..++..+ +.......+.+++.+.++.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCC
Confidence 111122111 11111224677888888777664
No 322
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.30 E-value=9.3e-07 Score=101.98 Aligned_cols=113 Identities=27% Similarity=0.379 Sum_probs=75.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHh
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI 841 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL 841 (987)
.++++++.+++| +.|+||+|+|||||++++.+-... |+ +.-+..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~f-~~is~~--- 83 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------PF-FHISGS--- 83 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------CE-EEEEGG---
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------Ce-eeCCHH---
Confidence 577788888888 999999999999999999984310 00 100100
Q ss_pred ccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC----------
Q 001980 842 AYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT---------- 911 (987)
Q Consensus 842 ~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaT---------- 911 (987)
+++... +| .+++++|-.+++|....|.||++||+.
T Consensus 84 ----------------------~~~~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 84 ----------------------DFVELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp ----------------------GTTTCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred ----------------------HHHHHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 111000 11 267889999999999999999999994
Q ss_pred CCCCHHHHHHHHHHHHHHc-----CCCeEEEEecCchhh
Q 001980 912 SALDAESECVLQEALERLM-----RGRTTVLVAHRLSTI 945 (987)
Q Consensus 912 S~LD~~te~~I~~~l~~~~-----~~~TvI~IaHRl~ti 945 (987)
++.|.+.++.+.+.+.+.- .+..||..||+++.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 4667776666666665431 356788899998654
No 323
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.30 E-value=3.3e-07 Score=102.63 Aligned_cols=144 Identities=15% Similarity=0.265 Sum_probs=84.8
Q ss_pred CcE-EEEEcCCCccHHHHHHHHHcCCC-----------CCccEEEECCEeCCCCCHHHHhcceEEEcCCCCC----chhc
Q 001980 128 GKT-VAVVGGSGSGKSTVVSLIERFYD-----------PNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPAL----FATT 191 (987)
Q Consensus 128 G~~-~~ivG~sGsGKSTLl~~l~g~~~-----------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l----~~~t 191 (987)
|-. ++|+|++|||||||++.|+|... |+.|.+.++|.++. +....|++.|.|.- |..|
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~t 251 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVT 251 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHH
Confidence 444 99999999999999999999875 67799999987653 22356777765532 2222
Q ss_pred HHHHHhcCC-------CCCCHHHHHHHHHHHhHHHHHHhCC-CCCc-ccccCCCCCCChHHHHHHHHH----HHh-ccCC
Q 001980 192 ILENILYGK-------PEATMAEVEAAASAANAHSFITLLP-NGYS-TQVGERGVQLSGGQKQRIAIA----RAM-LKNP 257 (987)
Q Consensus 192 v~eni~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-t~~~~~g~~LSgGqkqRialA----Ral-~~~~ 257 (987)
.+.+.... ............. ...+.+..+. .+.. -.+..+...+|+|++||+.++ +++ ..+|
T Consensus 252 -l~~~~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 252 -LSEAKYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp -HHGGGGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred -HHHHHhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 22332110 0111111111111 1112222221 1111 233555666898999988877 666 4445
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhh
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRL 284 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~ 284 (987)
++ +|+|++|......+.+.|.+.
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHH
Confidence 54 899999999988888888665
No 324
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.27 E-value=6e-07 Score=100.89 Aligned_cols=45 Identities=33% Similarity=0.423 Sum_probs=34.7
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECC
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIER--FYDPNAGHVLLDN 163 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g--~~~~~~G~i~~~g 163 (987)
.+|++++++++ .++|||++|||||||++.|+| ++++.+|.++..+
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 37889999988 999999999999999999999 6677777765443
No 325
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.27 E-value=9.2e-08 Score=98.05 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=41.7
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCC
Q 001980 122 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEP 185 (987)
Q Consensus 122 ~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 185 (987)
.++.++|++++|+|+||||||||+++|+|.+ |.+.++|.++.... ...+..+++++|++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDE 81 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCc
Confidence 3566899999999999999999999999987 89999987664211 11122467777764
No 326
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.25 E-value=7.8e-08 Score=101.68 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=35.8
Q ss_pred cEEEEeE-EEECCCCCCccceeeeeEEEeC---CcEEEEEcCCCCChHHHHHHHhccC
Q 001980 744 EIELRHV-DFAYPSRPDVVVFKDFNLRIRA---GQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 744 ~I~f~~v-sf~Y~~~~~~~vL~~vsl~I~~---Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.++++|+ +|+|.+ +.++|+|+||+|++ |++++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34699999999999 9999999999999999999999854
No 327
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.25 E-value=1.9e-07 Score=95.99 Aligned_cols=84 Identities=19% Similarity=0.136 Sum_probs=51.0
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEcccccc-----------cccc
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPAL-----------FAAS 836 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~l-----------F~gT 836 (987)
++|++|+.++|+|+|||||||++++|.+++.|..| +.+ +....... ...+.++++++|++.. +..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46889999999999999999999999999977555 222 11222211 1123347778877643 3444
Q ss_pred HHHHhccCCCCCCHHHHHHHHH
Q 001980 837 IFDNIAYGKEGATEAEVVEAAR 858 (987)
Q Consensus 837 IreNL~~~~~~~sd~ei~~al~ 858 (987)
++.|+ ++. ..+++.++++
T Consensus 78 ~~~~~-~g~---~~~~i~~~l~ 95 (207)
T 2j41_A 78 YVGNY-YGT---PVQYVKDTMD 95 (207)
T ss_dssp ETTEE-EEE---EHHHHHHHHH
T ss_pred ECCee-cCC---CHHHHHHHHH
Confidence 55553 332 3456665554
No 328
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.22 E-value=2.5e-07 Score=94.82 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=45.9
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccc
Q 001980 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF 833 (987)
Q Consensus 767 sl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF 833 (987)
.++.++|+.++|+|++||||||++++|.+.+ |.+.+||.++..- ....+..+++++|++.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccc
Confidence 3667899999999999999999999999987 8999999887531 112233578889987554
No 329
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.22 E-value=4.4e-08 Score=100.45 Aligned_cols=51 Identities=27% Similarity=0.429 Sum_probs=45.7
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceE--EECCccCC
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV--MIDGKDIR 812 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I--~idG~di~ 812 (987)
.+.+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ .+||.++.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 46788888899999999999999999999999999987 67988 99987665
No 330
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.22 E-value=8e-08 Score=96.72 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=29.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEE
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDP-NAGHVL 160 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-~~G~i~ 160 (987)
.+|++++|+||||||||||++.|++.+++ ..|.|.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 37999999999999999999999999874 455554
No 331
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.21 E-value=3e-07 Score=100.95 Aligned_cols=69 Identities=23% Similarity=0.315 Sum_probs=57.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH----HHH-----hcccEEE-cccc
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL----KSL-----RLKIGLV-QQEP 830 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l----~~l-----R~~i~~V-pQdp 830 (987)
++++++|++++|+.++|+|++|+||||++..|.+.+.+.+|+|.+.+.|+..... ..+ |..+.++ +|.+
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 3577888899999999999999999999999999999999999999999865432 344 6678888 6654
No 332
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.21 E-value=2.1e-08 Score=116.45 Aligned_cols=127 Identities=17% Similarity=0.247 Sum_probs=89.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCC-Cchh-cHH
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPA-LFAT-TIL 193 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~-l~~~-tv~ 193 (987)
..++++++++++| +.|+||+|+|||||+++|+++.. .|.+.++|.++.........+++.+++|+.. ..+. .+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 3688999999999 99999999999999999999875 7899999988765433334456777888764 3333 566
Q ss_pred HHH-hcCCCCC-----CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 001980 194 ENI-LYGKPEA-----TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267 (987)
Q Consensus 194 eni-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts 267 (987)
|+| .++.... ..++..+.+ ...+. .|||||+|+..+++|...+|++ |||+.-
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 677 3332211 112221111 12221 3789999999999999999987 899876
Q ss_pred C
Q 001980 268 A 268 (987)
Q Consensus 268 ~ 268 (987)
.
T Consensus 188 r 188 (499)
T 2dhr_A 188 R 188 (499)
T ss_dssp S
T ss_pred c
Confidence 3
No 333
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.19 E-value=3e-06 Score=94.98 Aligned_cols=123 Identities=17% Similarity=0.211 Sum_probs=81.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHH
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEV 853 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei 853 (987)
-++++||++|+|||||++.|.+.. + .+++.+..+.. ..++.++++..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~-~-----~~~~~~~~t~~-----~~~~~~~~~~~---------------------- 214 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK-P-----EIASYPFTTRG-----INVGQFEDGYF---------------------- 214 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC-C-----EEECCTTCSSC-----EEEEEEEETTE----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-C-----ccCCCCCeeec-----eeEEEEEecCc----------------------
Confidence 479999999999999999998864 2 22222222111 12233332211
Q ss_pred HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHcCC
Q 001980 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD-EATSALDAESECVLQEALERLMRG 932 (987)
Q Consensus 854 ~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLD-EaTS~LD~~te~~I~~~l~~~~~~ 932 (987)
...+.| .|+-.+.+ ...+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+...+
T Consensus 215 -----~~~l~D----t~G~~~~~----~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~ 280 (357)
T 2e87_A 215 -----RYQIID----TPGLLDRP----ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD 280 (357)
T ss_dssp -----EEEEEE----CTTTSSSC----STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTT
T ss_pred -----eEEEEe----CCCccccc----hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCC
Confidence 011221 23222222 2358999999887 66666777889999 999999999988888888877668
Q ss_pred CeEEEEe--cCch
Q 001980 933 RTTVLVA--HRLS 943 (987)
Q Consensus 933 ~TvI~Ia--HRl~ 943 (987)
+++|+|. |++.
T Consensus 281 ~piilV~NK~Dl~ 293 (357)
T 2e87_A 281 LPFLVVINKIDVA 293 (357)
T ss_dssp SCEEEEECCTTTC
T ss_pred CCEEEEEECcccC
Confidence 8999999 7774
No 334
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=4.8e-07 Score=92.58 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=25.1
Q ss_pred ECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccC
Q 001980 753 AYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 753 ~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
+|++++..++++||||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 466666667999999999999999999999999999999999876
No 335
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.18 E-value=7e-07 Score=100.34 Aligned_cols=45 Identities=29% Similarity=0.306 Sum_probs=35.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc--cCCCCCceEEECC
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIER--FYDPTAGKVMIDG 808 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r--l~~p~~G~I~idG 808 (987)
.+|++++++++ .|+|||++|||||||++.|.| +.++.+|.++-..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 47999999998 999999999999999999999 7777777665443
No 336
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.18 E-value=1.2e-07 Score=100.19 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=35.7
Q ss_pred cEEEEeE-EEECCCCCCccceeeeeEEEeC---CcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 99 NIEFKNV-TFSYPSRPDVIIFRDFSIFFPA---GKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 99 ~i~~~~~-~~~y~~~~~~~~l~~i~l~i~~---G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.++++|+ +|+|++ ..++|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34599999999999 9999999999999999999999865
No 337
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.16 E-value=6.7e-07 Score=91.82 Aligned_cols=35 Identities=26% Similarity=0.165 Sum_probs=29.9
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 001980 123 IFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157 (987)
Q Consensus 123 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G 157 (987)
+++++|++++|+|||||||||++++|.+.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
No 338
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.13 E-value=6e-07 Score=98.59 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=56.5
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH----HHH-----hcceEEE-cCCCCC
Q 001980 118 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL----RWL-----RDQIGLV-NQEPAL 187 (987)
Q Consensus 118 l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~-----~~~i~~v-~Q~~~l 187 (987)
++++||++++|++++|+|++||||||++..|++.+.+..|+|.+.+.|...... ..+ +..+.++ +|.+..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 367888899999999999999999999999999999999999998877654321 233 4578898 676443
Q ss_pred c
Q 001980 188 F 188 (987)
Q Consensus 188 ~ 188 (987)
.
T Consensus 175 ~ 175 (320)
T 1zu4_A 175 D 175 (320)
T ss_dssp C
T ss_pred C
Confidence 3
No 339
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.13 E-value=1.6e-07 Score=110.30 Aligned_cols=88 Identities=27% Similarity=0.301 Sum_probs=62.4
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc-eEE-ECCccCCC-------CCH---HHHhcccEEEcccccccccc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAG-KVM-IDGKDIRR-------LNL---KSLRLKIGLVQQEPALFAAS 836 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G-~I~-idG~di~~-------i~l---~~lR~~i~~VpQdp~lF~gT 836 (987)
.+++|+.++|+|+||||||||+++|.+.+.|.+| +|. +||.++.+ ++. ...++++++++|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 4789999999999999999999999999999887 784 99977642 222 23456789999873 3
Q ss_pred HHHHhccCCCC----CCHHHHHHHHHHcC
Q 001980 837 IFDNIAYGKEG----ATEAEVVEAARAAN 861 (987)
Q Consensus 837 IreNL~~~~~~----~sd~ei~~al~~a~ 861 (987)
..+|+.+.... ...++..+.++..+
T Consensus 440 ~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 440 KNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred hcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 44555432211 12345666777665
No 340
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.13 E-value=3.1e-07 Score=94.55 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=41.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG 199 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~ 199 (987)
++++|++++|+|++||||||+++.|.+.++ .+.+++|++.++++ +|+.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 567899999999999999999999999864 37888898887765 455443
No 341
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.13 E-value=5.8e-08 Score=99.56 Aligned_cols=59 Identities=25% Similarity=0.357 Sum_probs=44.7
Q ss_pred eEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE--EECCEeC
Q 001980 104 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV--LLDNVDI 166 (987)
Q Consensus 104 ~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i--~~~g~~~ 166 (987)
|++..+. .....+..++..++|++++|+||||||||||+++|++.+. ..|.+ .++|.++
T Consensus 4 ~~~~~~~---~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 4 NIKWHEC---SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp ------C---CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCccccc---ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 4454443 2336678888889999999999999999999999999987 77888 8887544
No 342
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.09 E-value=1.1e-06 Score=98.43 Aligned_cols=137 Identities=18% Similarity=0.233 Sum_probs=81.3
Q ss_pred EEEEcCCCCChHHHHHHHhccCC-----------CCCceEEECCccCCCCCHHHHhcccEEEcccccc----ccccHHHH
Q 001980 776 QALVGASGSGKSSVIALIERFYD-----------PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPAL----FAASIFDN 840 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl~~-----------p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~l----F~gTIreN 840 (987)
|+|||++|||||||++.|.+... |..|.|.++|.++. +-...|++.|.|.- |..|+. .
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~-~ 254 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLS-E 254 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHH-G
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHH-H
Confidence 99999999999999999999765 67799999997652 22335666654431 222322 2
Q ss_pred hc------cCC--CCC---CHHHH---HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH----HHH-ccC
Q 001980 841 IA------YGK--EGA---TEAEV---VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA----RAV-LKN 901 (987)
Q Consensus 841 L~------~~~--~~~---sd~ei---~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA----RAl-lr~ 901 (987)
+. +-. .+. .++++ .+.++..++.+ .| --.|..+-..+|+|++|++.++ +++ ..+
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~----~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG----KP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS----CC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC----CC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 21 100 011 11221 23333322211 11 0112333345788889988877 666 444
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 001980 902 PAILLLDEATSALDAESECVLQEALERLM 930 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l~~~~ 930 (987)
+++ +|||++|.+.-..+.+.|.+..
T Consensus 328 ~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 328 FDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 454 8999999999888888887654
No 343
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.09 E-value=6.6e-08 Score=112.25 Aligned_cols=138 Identities=19% Similarity=0.249 Sum_probs=89.7
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEE
Q 001980 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 825 (987)
Q Consensus 746 ~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~ 825 (987)
+++++...|. +..+++++++++++| +.|+||+|+|||||+++|.+... .|.|.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 3444444452 224789999999999 99999999999999999999875 7899999999877655556677778
Q ss_pred Eccccc-ccc-ccHHHHhcc-CCCC-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 826 VQQEPA-LFA-ASIFDNIAY-GKEG-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 826 VpQdp~-lF~-gTIreNL~~-~~~~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
++|+.. .+. -.+-|+++. +... ...++..+.+.. ++. .|||||+|+..+++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~-----LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ-----LLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH-----HHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH-----HHH---------------HhcccccCccEEEEE
Confidence 888764 222 245677742 2211 112222222211 111 255666666666666
Q ss_pred HccCCCEEEEeCCCC
Q 001980 898 VLKNPAILLLDEATS 912 (987)
Q Consensus 898 llr~p~ILlLDEaTS 912 (987)
...+|++ ||||.-
T Consensus 175 atn~p~~--LD~aLl 187 (499)
T 2dhr_A 175 ATNRPDI--LDPALL 187 (499)
T ss_dssp CCSCGGG--SCTTTS
T ss_pred ecCChhh--cCcccc
Confidence 6666665 666654
No 344
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.07 E-value=5.5e-07 Score=90.59 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=46.7
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE--eCCCCCH----HHHhcceEEEcCCC
Q 001980 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV--DIKTLQL----RWLRDQIGLVNQEP 185 (987)
Q Consensus 119 ~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~--~~~~~~~----~~~~~~i~~v~Q~~ 185 (987)
+++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++-.... ...+..|.+++|+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6789999999 99999999999999999999988887665322221 1100000 01234688999986
No 345
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=1.4e-06 Score=89.00 Aligned_cols=45 Identities=18% Similarity=0.052 Sum_probs=24.9
Q ss_pred ECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 108 SYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 108 ~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+|+..+...+++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 455445567899999999999999999999999999999999866
No 346
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.06 E-value=1.5e-06 Score=96.32 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=41.7
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE-EECCEeCCCCCHHHHhcceEEEcCC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV-LLDNVDIKTLQLRWLRDQIGLVNQE 184 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i-~~~g~~~~~~~~~~~~~~i~~v~Q~ 184 (987)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.+.. +. .+.+++++.+|+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~ 115 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKS 115 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGG
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhh
Confidence 378999999999999999999999999887777765 55553221 11 133445655554
No 347
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.02 E-value=3.7e-06 Score=92.87 Aligned_cols=128 Identities=20% Similarity=0.289 Sum_probs=73.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccC-CC------CCceEEECCccCCCCCHHHHhcc---cEEEccccccccccHH
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFY-DP------TAGKVMIDGKDIRRLNLKSLRLK---IGLVQQEPALFAASIF 838 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~-~p------~~G~I~idG~di~~i~l~~lR~~---i~~VpQdp~lF~gTIr 838 (987)
-+++|+.+.|+|++|||||||+..+..-. .+ ..+.++|+.... ++.+.+++. +++-++ .+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~~-------~~~ 173 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDID-------NVM 173 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCHH-------HHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCHH-------HHh
Confidence 58999999999999999999998877643 33 234466655321 122322221 111000 011
Q ss_pred HHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh-hHHHHHHHHHHHc---cCCCEEEEeCCCCCC
Q 001980 839 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG-GQKQRIAIARAVL---KNPAILLLDEATSAL 914 (987)
Q Consensus 839 eNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg-GQrQrlaLARAll---r~p~ILlLDEaTS~L 914 (987)
+|+.+.. ..+. -+.+.+..+++++ .+++++|+|+.|+-.
T Consensus 174 ~~l~~~~-------------------------------------~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 174 NNIYYIR-------------------------------------AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp HTEEEEE-------------------------------------CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred ccEEEEe-------------------------------------CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 1111100 0122 2346777888888 569999999999876
Q ss_pred CHH-------HH--HHHHHHHH---HHc--CCCeEEEEecCc
Q 001980 915 DAE-------SE--CVLQEALE---RLM--RGRTTVLVAHRL 942 (987)
Q Consensus 915 D~~-------te--~~I~~~l~---~~~--~~~TvI~IaHRl 942 (987)
+.+ ++ ..+.+.++ ... .++|||++.|-.
T Consensus 217 ~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 217 RAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred hhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 432 11 23444333 322 289999999854
No 348
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.01 E-value=2.7e-06 Score=87.39 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=43.0
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcc---ccCCEEEEEe
Q 001980 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI---RNVDTVAVIQ 310 (987)
Q Consensus 239 LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~---~~~d~i~~l~ 310 (987)
.+.|+.+|..+++.++.+|+.+..+ .+.++|...+.+.+.+... .+.++|+-+|.+... +.+|.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 4688999999999998887644333 3345666666666555443 356888888877653 4589998885
No 349
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.01 E-value=4.7e-07 Score=94.91 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=49.5
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC------CHHH----HhcccEEEcccccccc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL------NLKS----LRLKIGLVQQEPALFA 834 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i------~l~~----lR~~i~~VpQdp~lF~ 834 (987)
+.++|+.++|+|++||||||++++|.++ +|+|.+++.|.... .+.. .++.+++++|++.++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 4578999999999999999999999998 78999999886432 2221 2567899999887654
No 350
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.00 E-value=7.6e-07 Score=97.76 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=50.6
Q ss_pred ccccEEEEeEEEECCCCCCcccee--------------eeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 741 IRGEIELRHVDFAYPSRPDVVVFK--------------DFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 741 ~~g~I~f~~vsf~Y~~~~~~~vL~--------------~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
.+|.|.|+||+|.||.. ..+|+ |+++.|.+||+++|+|++|+|||||++.|.|+..
T Consensus 130 ~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 130 ARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 46889999999999854 35788 8999999999999999999999999999999863
No 351
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.99 E-value=1.8e-05 Score=87.68 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=45.8
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceE-EECCccCCCCCHHHHhcccEEEccccc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV-MIDGKDIRRLNLKSLRLKIGLVQQEPA 831 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I-~idG~di~~i~l~~lR~~i~~VpQdp~ 831 (987)
-+++|+.+.|.||+|||||||+..+.+...+.+|.+ +||+.+... ....+++++.+|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLL 117 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhh
Confidence 488999999999999999999999999887777764 777654332 124566777766543
No 352
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.97 E-value=4.2e-06 Score=103.01 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=52.2
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHcCC-CeEEE-EecCchhhhc
Q 001980 883 QLSGGQKQRIAIARAVLKNPAILLLDEATS-ALDAESECVLQEALERLMRG-RTTVL-VAHRLSTIRG 947 (987)
Q Consensus 883 ~LSgGQrQrlaLARAllr~p~ILlLDEaTS-~LD~~te~~I~~~l~~~~~~-~TvI~-IaHRl~ti~~ 947 (987)
-+|.|+.+|..++++++.++++||+|||.. ++|.+.-..+.+.+....++ +++++ .||..+.+..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 478999999999999999999999999997 89987766666767666544 45555 4898776654
No 353
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.95 E-value=9.6e-06 Score=90.88 Aligned_cols=61 Identities=18% Similarity=0.091 Sum_probs=47.6
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEe-CCCCCCChHHHHHHHHHHHhhhCCCeEEEEc--CCC
Q 001980 236 GVQLSGGQKQRIAIARAMLKNPKILLLD-EATSALDAGSESIVQEALDRLMVGRTTVVVA--HRL 297 (987)
Q Consensus 236 g~~LSgGqkqRialARal~~~~~illlD-Epts~LD~~~~~~i~~~l~~~~~~~tvi~vt--H~~ 297 (987)
...+|+|++|++. +.+...++-++++| ++.+++|......+.+.+.+...++.+|+|. ||+
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 3468999999887 66656777889999 9999999988777777776654478888888 554
No 354
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.94 E-value=2.9e-06 Score=87.14 Aligned_cols=69 Identities=20% Similarity=0.131 Sum_probs=44.0
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh---hccCEEEEEeC
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI---RGVDCIGVVQD 956 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti---~~~D~Iivl~~ 956 (987)
+.|+.+|..+++.+..+|..+-.+ ++.+++...+.+.+.+... .+.++|+-+|.+... ..||++++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 678999999999988887644333 3345666666666655543 355788888877653 56899999864
No 355
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.92 E-value=6.9e-06 Score=101.08 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=51.6
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCChHHHHHHHHHHHhhhC-CCeEEE-EcCCCCccc
Q 001980 236 GVQLSGGQKQRIAIARAMLKNPKILLLDEATS-ALDAGSESIVQEALDRLMV-GRTTVV-VAHRLSTIR 301 (987)
Q Consensus 236 g~~LSgGqkqRialARal~~~~~illlDEpts-~LD~~~~~~i~~~l~~~~~-~~tvi~-vtH~~~~~~ 301 (987)
..-+|+|+.+|..++++++.+++++|+|||.. +||......+.+.+..... .+++++ +||+.+.+.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 34589999999999999999999999999997 8998766666666655543 456666 489876554
No 356
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.87 E-value=1.9e-05 Score=89.61 Aligned_cols=161 Identities=18% Similarity=0.197 Sum_probs=93.2
Q ss_pred EEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH-HhcccEE
Q 001980 747 LRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLKIGL 825 (987)
Q Consensus 747 f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~-lR~~i~~ 825 (987)
.++++..|.+. . ++++|+ +|+.++++|++||||||++..|.+.+.+.+|+|.+.+.|+......+ |+..
T Consensus 79 ~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~--- 148 (425)
T 2ffh_A 79 YEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL--- 148 (425)
T ss_dssp HHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH---
T ss_pred HHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh---
Confidence 34455556322 1 567777 89999999999999999999999999999999999988886643322 2210
Q ss_pred EccccccccccHHHHhcc--CCCCCCHHHH-HHHHHHcCchhhHhhCCCcCCCccCCCCCCC---ChhHHHHHHHHHHHc
Q 001980 826 VQQEPALFAASIFDNIAY--GKEGATEAEV-VEAARAANVHGFVSALPNAYKTPVGERGVQL---SGGQKQRIAIARAVL 899 (987)
Q Consensus 826 VpQdp~lF~gTIreNL~~--~~~~~sd~ei-~~al~~a~l~~~i~~lp~gldt~vge~G~~L---SgGQrQrlaLARAll 899 (987)
.-+.|+.+ ..+..+..++ .++++.+. .+++|..+-+.+..+ ..-..++..+++++.
T Consensus 149 ----------~~~~gv~v~~~~~~~~p~~i~~~~l~~~~--------~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~ 210 (425)
T 2ffh_A 149 ----------GEKVGVPVLEVMDGESPESIRRRVEEKAR--------LEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (425)
T ss_dssp ----------HHHHTCCEEECCTTCCHHHHHHHHHHHHH--------HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred ----------cccCCccEEecCCCCCHHHHHHHHHHHHH--------HCCCCEEEEcCCCcccccHHHHHHHHHhhhccC
Confidence 00112221 1112234444 33443321 133443332222222 234667778888886
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEec
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 940 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaH 940 (987)
-++-+|++| ++++.|.... + +.+.+. -+.+-+++++
T Consensus 211 pd~vlLVvD-a~tgq~av~~--a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 211 PDEVLLVLD-AMTGQEALSV--A-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp CSEEEEEEE-GGGTTHHHHH--H-HHHHHH-TCCCEEEEES
T ss_pred CceEEEEEe-ccchHHHHHH--H-HHHHhc-CCceEEEEeC
Confidence 666788888 4556554422 2 233332 2446666665
No 357
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.82 E-value=1.6e-05 Score=90.37 Aligned_cols=41 Identities=29% Similarity=0.365 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 812 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~ 812 (987)
++..++++|++||||||++..|.+.+.+.++++.+-+.|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 46889999999999999999999999988889988776653
No 358
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.79 E-value=3.5e-06 Score=99.74 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=46.8
Q ss_pred EEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 747 LRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 747 f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
++++..+|. ...+++++++++ +|+.+.|+||+|+|||||+++|.+...+..|.|.++|
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 344554552 224678888888 8999999999999999999999999988888887766
No 359
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.77 E-value=5.5e-05 Score=83.17 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=31.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
+.|+.+.--+++|+.+.|.||+|+||||++.-+..-.-
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35777766799999999999999999999987776543
No 360
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.74 E-value=9.2e-06 Score=83.08 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=41.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 817 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~ 817 (987)
.++|+.++|+|++||||||+++.|.+.+++.+|.|.+.+.|....+..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 567899999999999999999999999998899998888777655543
No 361
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.74 E-value=3.4e-05 Score=84.82 Aligned_cols=122 Identities=14% Similarity=0.191 Sum_probs=75.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENI 196 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni 196 (987)
.|+.+.--+++|+++.|.|++|+|||||+.-++.......+ .+.|++=+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSlE------------ 83 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSLE------------ 83 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEESS------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeCC------------
Confidence 45665556899999999999999999999888764432222 34443321
Q ss_pred hcCCCCCCHHHHHHHH----HHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChH
Q 001980 197 LYGKPEATMAEVEAAA----SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272 (987)
Q Consensus 197 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~ 272 (987)
.+.+++..-+ ....+... . . ..||+++++|++.|...+.++++++.|+|...+|
T Consensus 84 ------ms~~ql~~Rlls~~~~v~~~~l-----------~--~-g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-- 141 (338)
T 4a1f_A 84 ------MSAEQLALRALSDLTSINMHDL-----------E--S-GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-- 141 (338)
T ss_dssp ------SCHHHHHHHHHHHHHCCCHHHH-----------H--H-TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH--
T ss_pred ------CCHHHHHHHHHHHhhCCCHHHH-----------h--c-CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH--
Confidence 1222222211 11111111 1 1 2699999999999999999999999999865433
Q ss_pred HHHHHHHHHHhhh--C-CCeEEEEc
Q 001980 273 SESIVQEALDRLM--V-GRTTVVVA 294 (987)
Q Consensus 273 ~~~~i~~~l~~~~--~-~~tvi~vt 294 (987)
.+...++++. . +..+|+|-
T Consensus 142 ---~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 142 ---QIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp ---HHHHHHHHHHHHCTTEEEEEEE
T ss_pred ---HHHHHHHHHHHhcCCCCEEEEe
Confidence 3334444332 2 45666664
No 362
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.72 E-value=4.2e-06 Score=83.45 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=33.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK 167 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 167 (987)
.+|++++|+|++||||||+++.|.+.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88888876554
No 363
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.70 E-value=1.1e-05 Score=80.26 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=41.4
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhc-ccEEEcccc
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL-KIGLVQQEP 830 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~-~i~~VpQdp 830 (987)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+-++.. ...+++ .+++.+|++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~ 60 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDD 60 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCcc
Confidence 468999999999999999999999875 889999877753 222332 456666653
No 364
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.69 E-value=2.7e-05 Score=86.52 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=31.3
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccC-CC------CCceEEECCc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFY-DP------TAGKVMIDGK 809 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~-~p------~~G~I~idG~ 809 (987)
-+++|+.+.|+|++|||||||+..+..-. .| ..+.++||..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 48899999999999999999998887742 22 2345666654
No 365
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.68 E-value=1e-05 Score=83.13 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=27.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDP 154 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~ 154 (987)
++|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999999999987
No 366
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.66 E-value=6.6e-06 Score=90.38 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=48.0
Q ss_pred CccEEEEeEEEECCCCCCcccee--------------eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 97 NGNIEFKNVTFSYPSRPDVIIFR--------------DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~~~~~l~--------------~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+.+.|+|+++.||.+ +..|+ |+++.+.+|+.++|+||+|+|||||++.|.+..
T Consensus 131 ~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3468899999999853 45788 899999999999999999999999999999875
No 367
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.65 E-value=1.4e-05 Score=83.62 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=35.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
+.++|++++|.|+||||||||+++|.|. .|+|.+.+.|.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 4478999999999999999999999998 78899988765
No 368
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.64 E-value=1.1e-05 Score=82.56 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=37.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK 167 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 167 (987)
.++|++++|+|+||||||||++.|.+.+++..|.|.+.+.|..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 5688999999999999999999999999888898887665543
No 369
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.62 E-value=0.00015 Score=81.82 Aligned_cols=44 Identities=18% Similarity=0.064 Sum_probs=33.4
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh----CCCeEEEEcCCCCc
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM----VGRTTVVVAHRLST 299 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~vtH~~~~ 299 (987)
.+|.++++||+... |......+.+.+.++. .+.++|++||+.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45789999999876 8877777777775543 36688889998753
No 370
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.62 E-value=1.8e-05 Score=87.44 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=25.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
-+++|+++.|.||+|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 47899999999999999999998887653
No 371
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.59 E-value=0.00022 Score=80.54 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=33.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc----CCCeEEEEecCchhh
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLM----RGRTTVLVAHRLSTI 945 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~----~~~TvI~IaHRl~ti 945 (987)
.+|.+|+|||+... |......+.+.+.+.. .+.++|+++|+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999887 8777777766665432 367888999988543
No 372
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.54 E-value=1.3e-05 Score=87.59 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=33.9
Q ss_pred ceeeeeEEEeCCc------EEEEEcCCCCChHHHHHHHhccCC--CCCceE
Q 001980 762 VFKDFNLRIRAGQ------SQALVGASGSGKSSVIALIERFYD--PTAGKV 804 (987)
Q Consensus 762 vL~~vsl~I~~Ge------~vaIVG~sGsGKSTL~~lL~rl~~--p~~G~I 804 (987)
.|++++..+.+++ .+||+|+|||||||++++|.++++ |.+|.+
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 5566666666555 799999999999999999999987 445553
No 373
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.54 E-value=7e-05 Score=85.03 Aligned_cols=37 Identities=30% Similarity=0.346 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
++.+++++|++||||||++..|++.+.+..++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5789999999999999999999999988777776544
No 374
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.52 E-value=9.5e-05 Score=83.79 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=48.9
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 001980 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK 167 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 167 (987)
..+++++.|+... ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|..
T Consensus 78 v~~~L~~~~~~~~-----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 78 VYEALKEALGGEA-----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHHTTSSC-----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred HHHHHHHHhCCCc-----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 3446677775321 567887 89999999999999999999999999999999988776654
No 375
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.51 E-value=3.1e-05 Score=89.17 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=46.0
Q ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHHHc-CCCeEEEEecCc-hhhhcc-CEEEE-EeCCEEEEecChh
Q 001980 901 NPAILLLDEATSALDA-ESECVLQEALERLM-RGRTTVLVAHRL-STIRGV-DCIGV-VQDGRIVEQGSHS 966 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~-~te~~I~~~l~~~~-~~~TvI~IaHRl-~ti~~~-D~Iiv-l~~G~ive~Gt~~ 966 (987)
++++|++||+..-.+. .+...+...+.+.. .++++|+++|+. ..+... +++.- ++.|.+++.+.|+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8999999999887764 67777888887754 568889999984 333222 23322 5667777776654
No 376
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.47 E-value=1.1e-05 Score=88.04 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=34.4
Q ss_pred ceeeeeEEEeCCc------EEEEEcCCCccHHHHHHHHHcCCC--CCccE
Q 001980 117 IFRDFSIFFPAGK------TVAVVGGSGSGKSTVVSLIERFYD--PNAGH 158 (987)
Q Consensus 117 ~l~~i~l~i~~G~------~~~ivG~sGsGKSTLl~~l~g~~~--~~~G~ 158 (987)
.|++++..+.+++ +++|+||||||||||+++|.+++. |+.|.
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~ 124 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN 124 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe
Confidence 5667777776666 999999999999999999999987 34444
No 377
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.47 E-value=6.5e-06 Score=84.05 Aligned_cols=32 Identities=34% Similarity=0.498 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD 810 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~d 810 (987)
..|+|+|++||||||+.+.|.+. |...+|.-+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 46999999999999999999986 667776543
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.47 E-value=1.5e-05 Score=79.77 Aligned_cols=42 Identities=33% Similarity=0.511 Sum_probs=35.0
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCCCCCc--eEEECCccCCC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYDPTAG--KVMIDGKDIRR 813 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G--~I~idG~di~~ 813 (987)
++|+.++|+|++||||||++++|.+.+.+ .| .|.+||..++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHHH
Confidence 47999999999999999999999998876 56 77788766543
No 379
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.46 E-value=2.7e-05 Score=91.50 Aligned_cols=42 Identities=33% Similarity=0.236 Sum_probs=37.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEE-ECCEe
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-HVL-LDNVD 165 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G-~i~-~~g~~ 165 (987)
.+++|++++|+|+||||||||+++|+|.+.|++| ++. +||.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 5789999999999999999999999999999987 674 88743
No 380
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.40 E-value=0.00018 Score=79.93 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=25.7
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988875
No 381
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.38 E-value=0.00069 Score=70.93 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=24.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPNAGH 158 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~~G~ 158 (987)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 57999999999999999999987766553
No 382
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.38 E-value=0.00049 Score=74.67 Aligned_cols=70 Identities=21% Similarity=0.227 Sum_probs=44.3
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH----------HHHHHHHHHHHc-----CCCeEEEEecCchhh----
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAES----------ECVLQEALERLM-----RGRTTVLVAHRLSTI---- 945 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~t----------e~~I~~~l~~~~-----~~~TvI~IaHRl~ti---- 945 (987)
+++++++-.+++|...+|.+|++||+.+-.+... ...+...+.... .+..+|..|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3577888888888888999999999988765422 122333343322 123566788886543
Q ss_pred -hccCEEEEE
Q 001980 946 -RGVDCIGVV 954 (987)
Q Consensus 946 -~~~D~Iivl 954 (987)
..+|+++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 346766554
No 383
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.35 E-value=2.7e-05 Score=86.63 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=37.6
Q ss_pred cceeeeeEEEeCCcE--EEEEcCCCCChHHHHHHHhccCCCCCc
Q 001980 761 VVFKDFNLRIRAGQS--QALVGASGSGKSSVIALIERFYDPTAG 802 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~--vaIVG~sGsGKSTL~~lL~rl~~p~~G 802 (987)
.+++.++..|+.|+. +.++||+|+||||+++++.+...+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 488999999999998 999999999999999999998766554
No 384
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.33 E-value=0.00077 Score=73.09 Aligned_cols=70 Identities=20% Similarity=0.227 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHH----------HHHHHHHHHhhhC-----CCeEEEEcCCCCccc---
Q 001980 240 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGS----------ESIVQEALDRLMV-----GRTTVVVAHRLSTIR--- 301 (987)
Q Consensus 240 SgGqkqRialARal~~~~~illlDEpts~LD~~~----------~~~i~~~l~~~~~-----~~tvi~vtH~~~~~~--- 301 (987)
+++++.|..++++...+|.++++||+.+-++... ...+...+..... +..+|.+|++++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3677888888888888999999999988765421 2234444444321 235667788765443
Q ss_pred --cCCEEEEE
Q 001980 302 --NVDTVAVI 309 (987)
Q Consensus 302 --~~d~i~~l 309 (987)
++++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 35655544
No 385
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.33 E-value=0.00023 Score=81.87 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=35.1
Q ss_pred cCCCEEEEeCCCCCCCh-HHHHHHHHHHHhhh-CCCeEEEEcCCCC
Q 001980 255 KNPKILLLDEATSALDA-GSESIVQEALDRLM-VGRTTVVVAHRLS 298 (987)
Q Consensus 255 ~~~~illlDEpts~LD~-~~~~~i~~~l~~~~-~~~tvi~vtH~~~ 298 (987)
.++++|++||+..-.+. .+++.+.+.+..+. .++.+|++||+..
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 38999999999887765 57778888887764 4788999999843
No 386
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.32 E-value=0.00026 Score=74.09 Aligned_cols=135 Identities=13% Similarity=0.172 Sum_probs=70.1
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccc-cccHHHHhccCCCCC
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF-AASIFDNIAYGKEGA 848 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF-~gTIreNL~~~~~~~ 848 (987)
+..|+.+.++|+|||||||++.++..-.....|. ...+.++.|.|... .-++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 3568999999999999999876553211111111 23467777877643 345666664211100
Q ss_pred CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC---CChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHH
Q 001980 849 TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ---LSGGQKQRIAIARAVLKNPAILLLDEATS-ALDAESECVLQE 924 (987)
Q Consensus 849 sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~---LSgGQrQrlaLARAllr~p~ILlLDEaTS-~LD~~te~~I~~ 924 (987)
- ...++... ..+......+.. -..|.-.+. .+.-+++-+++|+||+-. ++|......+.+
T Consensus 137 ~-------~~~~g~~~-------~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 137 P-------GKSCGYSV-------RFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp T-------TSSEEEEE-------TTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred c-------CceEEEee-------chhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 0 00000000 000000000101 234554444 344689999999999976 577666544555
Q ss_pred HHHHHcCCCeEE
Q 001980 925 ALERLMRGRTTV 936 (987)
Q Consensus 925 ~l~~~~~~~TvI 936 (987)
.+.....++.+|
T Consensus 201 ~i~~~~~~~~~i 212 (235)
T 3llm_A 201 DVVQAYPEVRIV 212 (235)
T ss_dssp HHHHHCTTSEEE
T ss_pred HHHhhCCCCeEE
Confidence 555555444333
No 387
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.29 E-value=0.00097 Score=69.81 Aligned_cols=28 Identities=32% Similarity=0.271 Sum_probs=23.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCCc
Q 001980 775 SQALVGASGSGKSSVIALIERFYDPTAG 802 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p~~G 802 (987)
+|+|+|++|+|||||++.|++-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999987665554
No 388
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.28 E-value=5.7e-05 Score=93.45 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=27.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCC
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDP 799 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p 799 (987)
.+++|+.+.|+||+|||||||+++|.+.+.+
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 4678899999999999999999999998643
No 389
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.26 E-value=0.0001 Score=84.96 Aligned_cols=61 Identities=26% Similarity=0.358 Sum_probs=39.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhccC------------CCCCceEEECCccCCCCCHHHHhcccEEEcccccccc
Q 001980 774 QSQALVGASGSGKSSVIALIERFY------------DPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA 834 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~------------~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~ 834 (987)
-+++|||++|+|||||++.|.|.. ++.+|.+.++|.++.-++..-+|+...+.+|....|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 369999999999999999999874 3678999999987665555555666677777665554
No 390
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.26 E-value=3.7e-05 Score=90.87 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=42.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV 164 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~ 164 (987)
.+++++++++ +|+.++|+||+|+|||||+++|++.+.+..|+|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 3567788887 89999999999999999999999999998888877763
No 391
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.25 E-value=0.00022 Score=88.30 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=38.9
Q ss_pred eeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC
Q 001980 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR 813 (987)
Q Consensus 765 ~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 813 (987)
..++.+++++.+.++||+|+|||||+++|.+... .+-+.+++.++..
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLT 549 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTT
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhh
Confidence 3466788999999999999999999999999875 4567788777643
No 392
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.25 E-value=0.00026 Score=77.07 Aligned_cols=145 Identities=16% Similarity=0.144 Sum_probs=75.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC-CccCCCCCHHHHhcccEEEcccccc--ccccHHHHhccCCCCC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID-GKDIRRLNLKSLRLKIGLVQQEPAL--FAASIFDNIAYGKEGA 848 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id-G~di~~i~l~~lR~~i~~VpQdp~l--F~gTIreNL~~~~~~~ 848 (987)
++.+|+|||++|+|||||++.|.+.- +.+. +.+-. ..++..++++|+..- |-.| +| .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~~iDT------pG---~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAIYVDT------PG---L 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEEEESS------SS---C
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEEEEEC------cC---C
Confidence 34589999999999999999999852 2221 11111 123456788877532 2122 22 2
Q ss_pred CHHHHHHHHHHcCchhhHhhCCCcCCCcc--CCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHH
Q 001980 849 TEAEVVEAARAANVHGFVSALPNAYKTPV--GERGVQLSGGQKQRIAIARAVL--KNPAILLLDEATSALDAES-ECVLQ 923 (987)
Q Consensus 849 sd~ei~~al~~a~l~~~i~~lp~gldt~v--ge~G~~LSgGQrQrlaLARAll--r~p~ILlLDEaTS~LD~~t-e~~I~ 923 (987)
.. +-...+...-.......+ ...|..+ -+. .++|+|++ .+++++. ..|.||++ +-+|... ...+.
T Consensus 67 ~~-~~~~~l~~~~~~~~~~~l-~~~D~vl~Vvd~-~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~ 136 (301)
T 1ega_A 67 HM-EEKRAINRLMNKAASSSI-GDVELVIFVVEG-TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLL 136 (301)
T ss_dssp CH-HHHHHHHHHHTCCTTSCC-CCEEEEEEEEET-TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHH
T ss_pred Cc-cchhhHHHHHHHHHHHHH-hcCCEEEEEEeC-CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHH
Confidence 20 011111110000000001 1111111 111 22899887 4566665 67889998 6788776 55566
Q ss_pred HHHHHHcC--C--CeEEEEecCchhhh
Q 001980 924 EALERLMR--G--RTTVLVAHRLSTIR 946 (987)
Q Consensus 924 ~~l~~~~~--~--~TvI~IaHRl~ti~ 946 (987)
+.+.+..+ + .++.+.||.-..+.
T Consensus 137 ~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 137 PHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 66665543 2 24555677655443
No 393
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.23 E-value=5.9e-05 Score=76.70 Aligned_cols=56 Identities=21% Similarity=0.453 Sum_probs=37.6
Q ss_pred EEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc----cC----CCCCceEEECCc
Q 001980 751 DFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIER----FY----DPTAGKVMIDGK 809 (987)
Q Consensus 751 sf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r----l~----~p~~G~I~idG~ 809 (987)
+++|++- .++++++|+..+++ +|+++|++|+|||||++.+.+ .+ .++.+.+.++|.
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 4567543 35899999998887 699999999999999999986 22 233455666653
No 394
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.23 E-value=0.00033 Score=76.75 Aligned_cols=35 Identities=6% Similarity=0.082 Sum_probs=30.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
+.|+++.--+++|+.+.|.|++|+||||++.-+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 46777776699999999999999999999877764
No 395
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.23 E-value=3.7e-05 Score=85.46 Aligned_cols=52 Identities=15% Similarity=0.136 Sum_probs=46.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 812 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~ 812 (987)
.+++++++.+++|.+++|+|++|+||||+++.|.+.+.+.+|++.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4788999999999999999999999999999999999888888877666654
No 396
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.22 E-value=9e-05 Score=83.47 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=26.2
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCCCC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYDPT 800 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~ 800 (987)
+++..+.|+|++|+|||||++.+.+...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457789999999999999999999887654
No 397
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.22 E-value=0.00037 Score=76.42 Aligned_cols=127 Identities=10% Similarity=0.104 Sum_probs=74.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENI 196 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni 196 (987)
.|+++.--+++|+++.|.|++|+|||||+..++...-. .| ..+.|+.=+
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE------------ 105 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE------------ 105 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS------------
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC------------
Confidence 56776656899999999999999999999877643211 11 134444322
Q ss_pred hcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCC-CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHH
Q 001980 197 LYGKPEATMAEVEAAASAANAHSFITLLPNGYST-QVGERG-VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274 (987)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g-~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~ 274 (987)
.+.+++..-+... .. |.+. .+- .| ..||+++++|++.|...+.++++++.|+|... .
T Consensus 106 ------~s~~~l~~R~~~~-----~~----~i~~~~l~-~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~--- 164 (315)
T 3bh0_A 106 ------MGKKENIKRLIVT-----AG----SINAQKIK-AARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS--V--- 164 (315)
T ss_dssp ------SCHHHHHHHHHHH-----HT----TCCHHHHH-SCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--H---
T ss_pred ------CCHHHHHHHHHHH-----Hc----CCCHHHHh-cCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--H---
Confidence 1222222111100 00 1110 010 11 12899999999999999999999999998643 2
Q ss_pred HHHHHHHHhhh--CCCe--EEEEcC
Q 001980 275 SIVQEALDRLM--VGRT--TVVVAH 295 (987)
Q Consensus 275 ~~i~~~l~~~~--~~~t--vi~vtH 295 (987)
..+.+.++++. .+.. +|+|-|
T Consensus 165 ~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 165 NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 23344444432 2445 777654
No 398
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.19 E-value=0.00018 Score=82.83 Aligned_cols=60 Identities=23% Similarity=0.253 Sum_probs=37.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC------------CCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCc
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFYD------------PNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF 188 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~~------------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 188 (987)
-.++|+|++|+|||||++.|+|... +..|.+.++|.++.-+|....++...+.+|....|
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~ 252 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKY 252 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCS
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHH
Confidence 3799999999999999999999853 67899999998765444433344444444544333
No 399
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.18 E-value=0.00011 Score=81.87 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL 814 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i 814 (987)
++.+|+|+|++|||||||++.|.+.+.+.+|+|.+.+.|..+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 4678999999999999999999999998999999988877643
No 400
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.17 E-value=9.2e-05 Score=76.92 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=42.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc---CCCCCceE--------EECCccCCCCC-HHHHhcccEEEc------ccccccc
Q 001980 773 GQSQALVGASGSGKSSVIALIERF---YDPTAGKV--------MIDGKDIRRLN-LKSLRLKIGLVQ------QEPALFA 834 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl---~~p~~G~I--------~idG~di~~i~-l~~lR~~i~~Vp------Qdp~lF~ 834 (987)
.-.++|+|++||||||+.+.|.+. .-.+.|.+ .-.|+|+.+.. +..+-..+.+.. |+.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 348999999999999999999844 33445554 23455554432 344555555554 3344544
Q ss_pred ccHHHHhc
Q 001980 835 ASIFDNIA 842 (987)
Q Consensus 835 gTIreNL~ 842 (987)
..|.+||.
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 55555553
No 401
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.15 E-value=0.0018 Score=68.55 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=30.0
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccC
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI 811 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di 811 (987)
.++++++.+++| +.|+|++|+||||++++|.+..... -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 345555555555 9999999999999999999876422 355555443
No 402
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.15 E-value=0.00015 Score=71.77 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYDP 154 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~~ 154 (987)
.|++++|+|++|||||||++.|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999999998754
No 403
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.14 E-value=0.00016 Score=78.77 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=72.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE-CCEeCCCCCHHHHhcceEEEcCCCCC--chhcHHHHHhcCCCCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL-DNVDIKTLQLRWLRDQIGLVNQEPAL--FATTILENILYGKPEA 203 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~v~Q~~~l--~~~tv~eni~~~~~~~ 203 (987)
++.+++|+|++|+|||||++.|+|.- +.+ .+.+-.. .....+++.++..- |-+| |..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~tT-----r~~~~gi~~~~~~~i~~iDT---------pG~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQTT-----RHRIVGIHTEGAYQAIYVDT---------PGL 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSCC-----SSCEEEEEEETTEEEEEESS---------SSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCcc-----eeeEEEEEEECCeeEEEEEC---------cCC
Confidence 44589999999999999999999963 111 1111111 12345777765421 1111 111
Q ss_pred CHHHHHHHHHHHhHHHHHHhCCCCC---cc---cccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCChHH-H
Q 001980 204 TMAEVEAAASAANAHSFITLLPNGY---ST---QVGERGVQLSGGQKQRIAIARAML--KNPKILLLDEATSALDAGS-E 274 (987)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~g~---~t---~~~~~g~~LSgGqkqRialARal~--~~~~illlDEpts~LD~~~-~ 274 (987)
.. +....... .+.......+ +. .+.. ..+|+|++ .+++++. ..|.++++ +.+|... .
T Consensus 67 ~~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~ 132 (301)
T 1ega_A 67 HM-EEKRAINR----LMNKAASSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEK 132 (301)
T ss_dssp CH-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCH
T ss_pred Cc-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccH
Confidence 10 11111100 1111111111 11 1222 23999886 5566665 67888888 7888876 5
Q ss_pred HHHHHHHHhhhC--CC--eEEEEcCCCCcc
Q 001980 275 SIVQEALDRLMV--GR--TTVVVAHRLSTI 300 (987)
Q Consensus 275 ~~i~~~l~~~~~--~~--tvi~vtH~~~~~ 300 (987)
..+.+.+.++.+ +. .+.+.+|+-.-+
T Consensus 133 ~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 133 ADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp HHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 667677766643 32 444555655444
No 404
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.13 E-value=4.7e-05 Score=84.61 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=37.0
Q ss_pred cceeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCcc
Q 001980 116 IIFRDFSIFFPAGKT--VAVVGGSGSGKSTVVSLIERFYDPNAG 157 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~--~~ivG~sGsGKSTLl~~l~g~~~~~~G 157 (987)
.+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 477888888999998 999999999999999999998766544
No 405
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.12 E-value=0.00038 Score=78.27 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=26.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPN 155 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~ 155 (987)
.++..+.|.||+|+|||||++.+.+.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877553
No 406
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.10 E-value=8.4e-05 Score=74.21 Aligned_cols=38 Identities=37% Similarity=0.394 Sum_probs=31.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCE
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG--HVLLDNV 164 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G--~i~~~g~ 164 (987)
++|++++|+|++||||||+++.|.+.+++ .| .+.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence 47999999999999999999999998766 56 6666653
No 407
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.08 E-value=0.00025 Score=71.44 Aligned_cols=33 Identities=18% Similarity=0.488 Sum_probs=20.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
+++++|+..++. +|+++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 789999998877 899999999999999999987
No 408
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.07 E-value=0.0017 Score=68.72 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=27.5
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 118 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 118 l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
++++++..++| +.|+||+|+|||||+++|++.+... -+.+++
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~ 78 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISG 78 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeH
Confidence 34444444544 8999999999999999999876422 344544
No 409
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.05 E-value=0.00024 Score=74.08 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=32.8
Q ss_pred eeeeeEEEe---CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 763 FKDFNLRIR---AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 763 L~~vsl~I~---~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
|.++|+.+. +|..+.|.|++||||||+++.|...+.+ .+.+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 566666665 8999999999999999999999999987 66665443
No 410
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.04 E-value=0.0001 Score=75.88 Aligned_cols=44 Identities=32% Similarity=0.384 Sum_probs=38.1
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc--eEEECCccC
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG--KVMIDGKDI 811 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G--~I~idG~di 811 (987)
+.+++|..+.|+|++||||||+++.|.+.+.|..| .+.+||-++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34678999999999999999999999999988888 888886443
No 411
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.04 E-value=0.00013 Score=74.64 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=37.8
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCC-CCceE----------EECCccCCCCCHHHHhcc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDP-TAGKV----------MIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-~~G~I----------~idG~di~~i~l~~lR~~ 822 (987)
+..+|..++|+|+|||||||+++.|...++. ....+ .+||.+..-++.+.++..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~ 72 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK 72 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHH
Confidence 3467899999999999999999999987642 11111 246666666666666543
No 412
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.04 E-value=0.0003 Score=67.95 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=24.6
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 001980 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIE 149 (987)
Q Consensus 119 ~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~ 149 (987)
++..+++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666654 99999999999999999986
No 413
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.04 E-value=0.00022 Score=70.48 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
.|+.++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4688999999999999999999998754 66765
No 414
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.04 E-value=6.1e-05 Score=83.63 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=41.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
+++++++++.+|.+++|+|++|+|||||++.|++.+.+..|++.+-+
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 67888999999999999999999999999999999888777766544
No 415
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.02 E-value=0.0028 Score=70.32 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=33.2
Q ss_pred cceeeee--EEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-CceEEECC
Q 001980 761 VVFKDFN--LRIRAGQSQALVGASGSGKSSVIALIERFYDPT-AGKVMIDG 808 (987)
Q Consensus 761 ~vL~~vs--l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~-~G~I~idG 808 (987)
+.|+.+- =-+++|+.+.|.|++|+|||||+..+..-.... ...++||.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3466552 138899999999999999999997776543222 23455554
No 416
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.02 E-value=0.00023 Score=74.09 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=31.5
Q ss_pred eeeeeEEEe---CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 001980 118 FRDFSIFFP---AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL 161 (987)
Q Consensus 118 l~~i~l~i~---~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~ 161 (987)
|.++|+.+. +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566666665 8999999999999999999999999887 665543
No 417
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.99 E-value=0.00036 Score=69.03 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
++|.+|+|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999999864
No 418
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.98 E-value=0.00041 Score=72.51 Aligned_cols=123 Identities=16% Similarity=0.198 Sum_probs=67.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchh-cHHHHHhcCCCCC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEA 203 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~ 203 (987)
+.+|+.++|+||+||||||++.+++.......|. ...+.++.+.|..... ++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 3578999999999999999888765322111111 1246777777765433 6666664221100
Q ss_pred CHHHHHHHHHHHhHHHHHHhCCCCCcc----cccCC---CCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCChHHHH
Q 001980 204 TMAEVEAAASAANAHSFITLLPNGYST----QVGER---GVQLSGGQKQRIAIARAMLKNPKILLLDEATS-ALDAGSES 275 (987)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~g~~t----~~~~~---g~~LSgGqkqRialARal~~~~~illlDEpts-~LD~~~~~ 275 (987)
- + ...|+.. ..... ..=.+.|+-.+.. +.-+++-+++++||+-. ++|.....
T Consensus 137 ~-----------~-------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 P-----------G-------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp T-----------T-------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred c-----------C-------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHH
Confidence 0 0 0001110 00000 0113456666653 34689999999999976 46666543
Q ss_pred HHHHHHHh
Q 001980 276 IVQEALDR 283 (987)
Q Consensus 276 ~i~~~l~~ 283 (987)
...+.+..
T Consensus 197 ~~l~~i~~ 204 (235)
T 3llm_A 197 VVLRDVVQ 204 (235)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33444433
No 419
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.97 E-value=0.0012 Score=71.69 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=27.3
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 123 IFFPAGKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 123 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
+.++++..+.|.||+|+|||||++++++...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3467889999999999999999999998763
No 420
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.95 E-value=0.00084 Score=68.19 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFYDP 154 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~~~ 154 (987)
..+.|.||+|+|||||++.+......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999986644
No 421
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.94 E-value=0.001 Score=73.11 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=30.1
Q ss_pred ccCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHc-CCCeEEEEecCc
Q 001980 899 LKNPAILLLDEATSA-LDAESECVLQEALERLM-RGRTTVLVAHRL 942 (987)
Q Consensus 899 lr~p~ILlLDEaTS~-LD~~te~~I~~~l~~~~-~~~TvI~IaHRl 942 (987)
++++++|++||+..- -|..+...+...+.... .++.+|+.+++.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 467999999998763 33467777777777654 456666666643
No 422
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.92 E-value=0.00019 Score=79.83 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=35.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
+++.+++|+|++|||||||++.|+|.+.+.+|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 45779999999999999999999999988888887765443
No 423
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.90 E-value=0.00015 Score=74.50 Aligned_cols=41 Identities=29% Similarity=0.245 Sum_probs=36.4
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECC
Q 001980 123 IFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG--HVLLDN 163 (987)
Q Consensus 123 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G--~i~~~g 163 (987)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 44678999999999999999999999999987888 777775
No 424
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.89 E-value=0.0012 Score=76.25 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 001980 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 945 (987)
Q Consensus 886 gGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti 945 (987)
+.|++....++..+++++++|+......-....+..+.+.+++ .++.+|+|.++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccch
Confidence 4588888999999999998877655544334445566666654 478899999988765
No 425
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.89 E-value=0.0011 Score=72.93 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=30.3
Q ss_pred ccCCCEEEEeCCCCCC-ChHHHHHHHHHHHhhh-CCCeEEEEcCCC
Q 001980 254 LKNPKILLLDEATSAL-DAGSESIVQEALDRLM-VGRTTVVVAHRL 297 (987)
Q Consensus 254 ~~~~~illlDEpts~L-D~~~~~~i~~~l~~~~-~~~tvi~vtH~~ 297 (987)
+.++++|++||+-.-- +..+.+.+...+..+. .++.+|+++++.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4579999999986532 3366777777777654 466677776643
No 426
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.82 E-value=0.00027 Score=71.78 Aligned_cols=42 Identities=14% Similarity=0.413 Sum_probs=30.7
Q ss_pred EEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 001980 106 TFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 106 ~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|++- ..+++++|++.+++ .++|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 4556643 34789999988777 578999999999999999987
No 427
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.79 E-value=0.00018 Score=73.41 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=26.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
...+|.+++|+||||||||||.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999998774
No 428
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.78 E-value=0.0013 Score=66.67 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCC
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPT 800 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~ 800 (987)
..+.|.|++|+|||||++++.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 679999999999999999999876543
No 429
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.78 E-value=0.0022 Score=68.86 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.7
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+.++.-+.|.||+|+|||||++.++..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3567789999999999999999999875
No 430
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.77 E-value=0.00083 Score=67.54 Aligned_cols=33 Identities=15% Similarity=0.476 Sum_probs=20.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g 150 (987)
++++++++.++. .++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 678899988777 789999999999999999987
No 431
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.76 E-value=0.00057 Score=71.24 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
++..+.|.||+|+|||||++.+...+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987654
No 432
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.73 E-value=0.00094 Score=65.96 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
++|..++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 433
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.72 E-value=0.00028 Score=76.47 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=44.3
Q ss_pred ee-eeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC
Q 001980 764 KD-FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 815 (987)
Q Consensus 764 ~~-vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~ 815 (987)
++ ++|+++ |+.++++|++|+||||++..|.+.+.+.+|++.+.+.|+..-.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~ 140 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPA 140 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHH
Confidence 45 677766 9999999999999999999999999988999999888876543
No 434
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.71 E-value=0.00011 Score=74.93 Aligned_cols=69 Identities=17% Similarity=0.324 Sum_probs=37.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcc------CCCCCceEEECCc--cCCCCCH--------HHHhcccEEEccccccccccHH
Q 001980 775 SQALVGASGSGKSSVIALIERF------YDPTAGKVMIDGK--DIRRLNL--------KSLRLKIGLVQQEPALFAASIF 838 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl------~~p~~G~I~idG~--di~~i~l--------~~lR~~i~~VpQdp~lF~gTIr 838 (987)
.|+|+|++||||||+++.|.+. .+|..|...++.. |....+. ..+++....+.|+.++++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 6899999999999999999983 3444343222211 1000110 0123334566777788888887
Q ss_pred HHhcc
Q 001980 839 DNIAY 843 (987)
Q Consensus 839 eNL~~ 843 (987)
+|+.+
T Consensus 82 ~~~~~ 86 (205)
T 2jaq_A 82 EDPIF 86 (205)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 77654
No 435
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.71 E-value=0.003 Score=67.82 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccC
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
++++.-+-|.||+|+||||+++++.+..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999998764
No 436
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.69 E-value=0.0016 Score=70.91 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCCCce
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPTAGK 803 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~~G~ 803 (987)
..+.|+||+|+||||++++|.+...+.+|.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 468999999999999999999988776654
No 437
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.64 E-value=0.00093 Score=73.46 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=24.5
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
-+++|+.+.|.|++|||||||+.-+..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987764
No 438
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.63 E-value=0.001 Score=64.09 Aligned_cols=31 Identities=32% Similarity=0.529 Sum_probs=24.8
Q ss_pred eeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 764 ~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
++.++++.+| ..+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455566555 889999999999999999863
No 439
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.63 E-value=0.0012 Score=68.65 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDP 799 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p 799 (987)
++..+.|+|++|+||||+++.+.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876653
No 440
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.62 E-value=0.0034 Score=69.59 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=25.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+++|+++.|.|++|||||||+..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998877544
No 441
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.58 E-value=0.0032 Score=68.34 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=30.4
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
+.++++..+.|.||+|+|||||+++|.+... .+-+.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 3467889999999999999999999998763 3445444
No 442
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.56 E-value=0.00092 Score=66.92 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=26.6
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 001980 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 120 ~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 47888899999999999999999999999875
No 443
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.55 E-value=0.00096 Score=74.61 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=34.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcc-----------CCCCCceEEECCc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERF-----------YDPTAGKVMIDGK 809 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl-----------~~p~~G~I~idG~ 809 (987)
.+..|.+++|||++|+|||||+++|.+. .+|+.|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 6788899988774
No 444
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.53 E-value=0.00012 Score=76.02 Aligned_cols=33 Identities=30% Similarity=0.339 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHH---cCCCCCccEE
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIE---RFYDPNAGHV 159 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~---g~~~~~~G~i 159 (987)
..-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 34589999999999999999998 4444455555
No 445
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.51 E-value=0.00026 Score=79.06 Aligned_cols=58 Identities=21% Similarity=0.171 Sum_probs=36.5
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
.|.|.|+|++..|. ...++++++|+| +|||++|+|||||++.|++...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~---~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHH---THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhC---CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 46799999998884 235789999977 99999999999999999987665555544443
No 446
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.48 E-value=0.0034 Score=66.04 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=38.3
Q ss_pred ChhHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC----CCeEEEEecCchh
Q 001980 885 SGGQKQRIAIARAVL---KNPAILLLDEATSALDAESECVLQEALERLMR----GRTTVLVAHRLST 944 (987)
Q Consensus 885 SgGQrQrlaLARAll---r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~----~~TvI~IaHRl~t 944 (987)
+.|++.+-.+.|++. +.++++|+--..+.++. .+..+.+.+.+.+. ++++|+++|..+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 345666667777774 78887766544445554 45556666766553 5799999997654
No 447
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.45 E-value=0.0013 Score=68.32 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=33.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 945 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti 945 (987)
.++.+|++||+-. +|.+....+.+.+.+...+..+|+++++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999876 78877777777776544566788888887644
No 448
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.45 E-value=0.0068 Score=57.92 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPN 155 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~ 155 (987)
..+.-+.|.||+|+|||++++.|.......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 345568999999999999999998876543
No 449
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.44 E-value=0.0012 Score=66.06 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=26.6
Q ss_pred eeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 001980 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 765 ~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl 796 (987)
++|+..++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 47888889999999999999999999999876
No 450
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.42 E-value=0.0014 Score=64.93 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCC---CceEEECCcc
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPT---AGKVMIDGKD 810 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~---~G~I~idG~d 810 (987)
..++|+|+||||||||++.|.+.+.+. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 578999999999999999999876543 3778887755
No 451
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.41 E-value=0.0012 Score=73.47 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=34.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 945 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti 945 (987)
+++||++|| ...++..+...+.+.+.+...+..+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 567999999 67788888888888888765556677788777543
No 452
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.41 E-value=0.0021 Score=62.87 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhccC
Q 001980 774 QSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
-+++|+|++|+|||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999864
No 453
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.40 E-value=0.0016 Score=66.40 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=24.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 001980 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIE 149 (987)
Q Consensus 119 ~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~ 149 (987)
.+.++.+.+ .+++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 345566655 499999999999999999885
No 454
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.40 E-value=0.00088 Score=67.10 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=30.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i 159 (987)
..+|.+++|+|++||||||+++.|.+.+.+..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 35789999999999999999999999887766665
No 455
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.38 E-value=0.0035 Score=68.25 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=26.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i 159 (987)
..+.|+||+|+||||+++.|.+.+.+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999887766643
No 456
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.38 E-value=0.0078 Score=57.48 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccCCC
Q 001980 773 GQSQALVGASGSGKSSVIALIERFYDP 799 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~~p 799 (987)
+.-|-|.|++|+|||+++++|......
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 445899999999999999999876543
No 457
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.32 E-value=0.0017 Score=72.65 Aligned_cols=40 Identities=28% Similarity=0.432 Sum_probs=30.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC-----------CCCCccEEEECC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERF-----------YDPNAGHVLLDN 163 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~-----------~~~~~G~i~~~g 163 (987)
.+..|..++|||++|+|||||++.|+|. ..|+.|.+.+++
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3467889999999999999999999997 456666665544
No 458
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.31 E-value=0.0048 Score=70.95 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=31.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
+.|+.+.--+++|+.+.|.||+|+||||++.-+..-.-
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45777775699999999999999999999987776543
No 459
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.31 E-value=0.00043 Score=74.94 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=46.1
Q ss_pred EEEeEEEECCCCCCccceee-eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 101 EFKNVTFSYPSRPDVIIFRD-FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~-i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
..+++...|++.. ++ ++++.+ |++++++|++|+||||++..|++.+.+..|++.+.+.|.
T Consensus 76 ~~~~l~~~~~~~~-----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 76 VYDELSNLFGGDK-----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHHHTTCSC-----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHHhcccc-----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3445666675321 45 777766 999999999999999999999999988888877655443
No 460
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.29 E-value=0.0017 Score=64.76 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 001980 774 QSQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl 796 (987)
-+|+|+|++|+|||||++.|.+-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999873
No 461
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.28 E-value=0.0035 Score=61.19 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999643
No 462
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.27 E-value=0.0015 Score=65.30 Aligned_cols=39 Identities=28% Similarity=0.494 Sum_probs=33.1
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceE-EECC
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV-MIDG 808 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I-~idG 808 (987)
.++|..+.|+|.+||||||+++.|.+.+.+.+|.+ .+|+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 45789999999999999999999999988777765 4554
No 463
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.24 E-value=0.0014 Score=64.82 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=27.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFYDPN---AGHVLLDN 163 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~~~~---~G~i~~~g 163 (987)
..++|+|++|||||||++.|.+.+.+. -|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 589999999999999999999876543 35555554
No 464
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.22 E-value=0.015 Score=65.80 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i 806 (987)
++..+.++|++|+||||++..|.+.+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 35689999999999999999999887755445544
No 465
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.17 E-value=0.0015 Score=69.11 Aligned_cols=41 Identities=27% Similarity=0.482 Sum_probs=33.9
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 812 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~ 812 (987)
.+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-+++
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 45677899999999999999999998875 367888886554
No 466
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.16 E-value=0.0016 Score=66.23 Aligned_cols=35 Identities=40% Similarity=0.506 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccC
Q 001980 773 GQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI 811 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di 811 (987)
...|+|+|++||||||+++.|.+.+ |...+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4579999999999999999998876 5566665443
No 467
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.14 E-value=0.0013 Score=73.13 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=33.4
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCc
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLST 299 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~ 299 (987)
++.++++|| ...+++.....+.+.+.+......+|++|++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 7788888888888888776555567777776654
No 468
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.12 E-value=0.00048 Score=76.97 Aligned_cols=57 Identities=23% Similarity=0.202 Sum_probs=35.8
Q ss_pred CccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 001980 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 162 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~ 162 (987)
.+.+.++|++..|.. ..++++++|+| +|+|++|+|||||++.|.|...+..|.+..+
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~ 71 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGA 71 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC---------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCC
Confidence 345888888888853 34788999876 9999999999999999998766655554433
No 469
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.10 E-value=0.0029 Score=63.00 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 470
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.10 E-value=0.0015 Score=67.79 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=32.9
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcc
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~ 300 (987)
.++.++++||.-. +|+.....+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999765 78777777777776544456788888876544
No 471
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.07 E-value=0.011 Score=62.04 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHhc---cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh----CCCeEEEEcCCCCc
Q 001980 241 GGQKQRIAIARAML---KNPKILLLDEATSALDAGSESIVQEALDRLM----VGRTTVVVAHRLST 299 (987)
Q Consensus 241 gGqkqRialARal~---~~~~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~vtH~~~~ 299 (987)
.|++.+-.+.|+++ .+++++|+--+.+.++.. ...+.+.+.+.. .+.++|+++|..+.
T Consensus 87 ~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 87 KTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred cHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 34555556666663 788877765554555443 344445555432 26789999998664
No 472
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.04 E-value=0.0014 Score=66.58 Aligned_cols=32 Identities=34% Similarity=0.480 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
..+++|+|++||||||+.+.|.+.+ |...+++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 5689999999999999999998865 4445544
No 473
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.04 E-value=0.0075 Score=69.60 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCC
Q 001980 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 298 (987)
Q Consensus 241 gGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~ 298 (987)
+.|++-...++..+.+++++|+......-......++.+.+++ .++.+|+|.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D 142 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLD 142 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECcc
Confidence 3588888889999999998887655443233334456555543 3678888877655
No 474
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.03 E-value=0.0026 Score=64.66 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|++||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 475
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.95 E-value=0.015 Score=64.56 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=24.3
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl 796 (987)
-+++|+.+.|.|++|+|||||+..+..-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4789999999999999999998766543
No 476
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.94 E-value=0.0035 Score=62.46 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCC
Q 001980 775 SQALVGASGSGKSSVIALIERFYDP 799 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p 799 (987)
||+|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 7999999999999999999987543
No 477
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.89 E-value=0.012 Score=65.79 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
..+..+.|.||+|+|||||++.+.....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987663
No 478
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.87 E-value=0.024 Score=59.73 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
..-+.|.||+|+|||||++.++..+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4457899999999999999998754
No 479
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.86 E-value=0.0037 Score=62.23 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPN 155 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~ 155 (987)
.++|+|++|+|||||++.+.|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 58999999999999999999975443
No 480
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.84 E-value=0.004 Score=63.17 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
+|+|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 481
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.80 E-value=0.043 Score=57.73 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccC
Q 001980 773 GQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
..-+.|.|++|+||||+++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999998754
No 482
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.80 E-value=0.023 Score=65.18 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=73.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENI 196 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni 196 (987)
.|+.+.--+++|+++.|.|++|+|||||+.-++.......| ..+.|+.=+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------------------~~vl~~slE------------ 238 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG------------------VGVGIYSLE------------ 238 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------------------CCEEEEESS------------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------------------CeEEEEECC------------
Confidence 46666645899999999999999999999888765432212 134443322
Q ss_pred hcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHH
Q 001980 197 LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 276 (987)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~ 276 (987)
.+.+++...... ... |.+..--.. ..|+..+++|+.-|...+.+.++++.|+|... .. .
T Consensus 239 ------~~~~~l~~R~~~-----~~~----~i~~~~l~~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s--~~---~ 297 (444)
T 2q6t_A 239 ------MPAAQLTLRMMC-----SEA----RIDMNRVRL-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT--LM---E 297 (444)
T ss_dssp ------SCHHHHHHHHHH-----HHT----TCCTTTCCG-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB--HH---H
T ss_pred ------CCHHHHHHHHHH-----HHc----CCCHHHHhC-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC--HH---H
Confidence 122222221100 011 222110011 26999999999988888888899999887433 32 2
Q ss_pred HHHHHHhhh--CCCeEEEEc
Q 001980 277 VQEALDRLM--VGRTTVVVA 294 (987)
Q Consensus 277 i~~~l~~~~--~~~tvi~vt 294 (987)
+...++++. .+..+|+|-
T Consensus 298 l~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 298 VRARARRLVSQNQVGLIIID 317 (444)
T ss_dssp HHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEc
Confidence 333333332 255566664
No 483
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.79 E-value=0.0047 Score=69.28 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
..+..+.|.||+|+||||+++.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566799999999999999999988663
No 484
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.79 E-value=0.0063 Score=67.30 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc-----------cCCCCCceEEECC
Q 001980 773 GQSQALVGASGSGKSSVIALIER-----------FYDPTAGKVMIDG 808 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~r-----------l~~p~~G~I~idG 808 (987)
|-+++|||++|+|||||++.|.+ -.+|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4568888888876
No 485
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.78 E-value=0.0033 Score=66.41 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=31.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
.+++.++.|+|++||||||+.+.|...+. .|.+.+++-.+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 35677899999999999999999998774 25677776433
No 486
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.77 E-value=0.0067 Score=60.44 Aligned_cols=35 Identities=29% Similarity=0.528 Sum_probs=26.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc-c----CCCCCc----eEEECCc
Q 001980 775 SQALVGASGSGKSSVIALIER-F----YDPTAG----KVMIDGK 809 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r-l----~~p~~G----~I~idG~ 809 (987)
+|+|+|++|+|||||++.+.+ - +.|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 699999999999999975554 3 566666 5666664
No 487
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.75 E-value=0.033 Score=61.91 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
+...+.|+|++|+|||||++++.+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34568999999999999999998764
No 488
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.72 E-value=0.027 Score=62.67 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+..-+.|.||+|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998865
No 489
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.71 E-value=0.018 Score=62.06 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=25.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
-+++|..+.|.||.|+|||||+..++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999988753
No 490
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.69 E-value=0.0057 Score=62.19 Aligned_cols=30 Identities=33% Similarity=0.568 Sum_probs=23.8
Q ss_pred eeeeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 001980 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 764 ~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~ 794 (987)
++.++.+.+| ..+|+|+|||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455555554 88999999999999999875
No 491
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.67 E-value=0.031 Score=56.69 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=31.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchh
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLST 944 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~t 944 (987)
.++.+|++||+- .++......+.+.+.+...+..+|+++.+...
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 367899999974 46677777777777765455667777776653
No 492
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.67 E-value=0.0045 Score=61.72 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998543
No 493
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.67 E-value=0.0015 Score=71.55 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=33.1
Q ss_pred ceeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCC
Q 001980 117 IFRDFSIFFPAGKT--VAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 117 ~l~~i~l~i~~G~~--~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
+++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 67788888899998 99999999999999999998653
No 494
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.66 E-value=0.073 Score=58.16 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCH
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATM 205 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 205 (987)
.+..-+.|.||+|+|||+|++.++... ....-+.+++.++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~-~~~~~~~i~~~~l~-------------------------------------- 83 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA-NNSTFFSISSSDLV-------------------------------------- 83 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT-TSCEEEEEECCSSC--------------------------------------
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc-CCCcEEEEEhHHHH--------------------------------------
Q ss_pred HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC-------CCCCChHHHHHHH
Q 001980 206 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA-------TSALDAGSESIVQ 278 (987)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEp-------ts~LD~~~~~~i~ 278 (987)
...+|+ ..+.-|-.+.+|-..+|.|+++||. ..+........+.
T Consensus 84 -----------------------~~~~g~------~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~ 134 (322)
T 1xwi_A 84 -----------------------SKWLGE------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKT 134 (322)
T ss_dssp -----------------------CSSCCS------CHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHH
T ss_pred -----------------------hhhhhH------HHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHH
Q ss_pred HHHHhh------hCCCeEEEEcCCCCcc-----ccCCEEEEEe
Q 001980 279 EALDRL------MVGRTTVVVAHRLSTI-----RNVDTVAVIQ 310 (987)
Q Consensus 279 ~~l~~~------~~~~tvi~vtH~~~~~-----~~~d~i~~l~ 310 (987)
+.+..+ ..+..+|.+|+++..+ +++|+++.+.
T Consensus 135 ~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~ 177 (322)
T 1xwi_A 135 EFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIP 177 (322)
T ss_dssp HHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECC
T ss_pred HHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeC
No 495
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.66 E-value=0.0061 Score=65.80 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=34.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc----cCCCCCceEEECC
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIER----FYDPTAGKVMIDG 808 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r----l~~p~~G~I~idG 808 (987)
++++..+.+ .|.-++|+|+||+||||++..|.+ +..-+...|...+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 567777777 788999999999999999998887 4433334444433
No 496
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.65 E-value=0.012 Score=60.52 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=33.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecC-----------chhhhccCEEEEE
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHR-----------LSTIRGVDCIGVV 954 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHR-----------l~ti~~~D~Iivl 954 (987)
+++++++||+-- ++.+.-..+ +.+.. .+.+||++-|+ .+.+.-||+|.-|
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 589999999974 665432233 23333 38899999993 2234567998875
No 497
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.65 E-value=0.0058 Score=60.39 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
|.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998664
No 498
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.59 E-value=0.014 Score=63.10 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=25.1
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
--+++|..+.|.||.|+|||||+..+..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999988864
No 499
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.55 E-value=0.013 Score=65.27 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=31.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI 811 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di 811 (987)
.+|..+-|.||+|+||||+++.+.+.......-+.+++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 45678999999999999999999988764444556655443
No 500
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.52 E-value=0.0056 Score=61.00 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
Done!