BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001981
(986 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 490 bits (1261), Expect = e-138, Method: Compositional matrix adjust.
Identities = 308/774 (39%), Positives = 445/774 (57%), Gaps = 60/774 (7%)
Query: 203 LKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEEASH 262
+++ G+ + ++ + S +GV +V ++L+ + +D +I + +E+ +
Sbjct: 6 VRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGY 65
Query: 263 GPNIYHASLYTPPKRRETERLKETQMYRNRFFISCLFSVPVLLFSMVLPMIPTYGNWLDY 322
G A++ E E L ++M R + + F+ +LLF +P + D+
Sbjct: 66 GVVDEQAAVSA-----EVEHL--SRMKRKLYVAA--FAGVLLLFLAHFISLP----YEDF 112
Query: 323 KVHNMLTIGMLLRWILCTPVQFIVGQRFYVGAYHALRRRSANMDVLVALGTNAAYFYSVY 382
++ ++ P F G + A+ ALRRR+ NMDV+ ++G AA+ SV
Sbjct: 113 -----------VQLLIALPAIFYSGSSIFKAAFSALRRRTLNMDVMYSMGVGAAFLASVL 161
Query: 383 IAVKALTSNTFEGQDFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLT 442
L F+ETS +L++F+LLG+ LE AK +T +A+ KL L TA ++
Sbjct: 162 STAGVLPRE----YSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIR 217
Query: 443 LDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVVTDGQSYVNESMITGEAKPIAKG 502
DG+ E+ + + + DI+ + PGEK+PVDGVV +G+SYV+ESMI+GE P+ K
Sbjct: 218 -DGK-----EIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKS 271
Query: 503 PGDKVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPM 562
GD+V G T+N G L+++AT VG ET L+QIV+LVE A ++ P+Q+LAD++ +F+P
Sbjct: 272 KGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPT 331
Query: 563 VVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAV 622
V+ A ++ W+ A L A I+VLVVACPCA GLATPTA+
Sbjct: 332 VLLVAISAFIYWYFIAHAPLL-------------FAFTTLIAVLVVACPCAFGLATPTAL 378
Query: 623 MVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCD 682
V GKGA LG+LIK +ALE A KV V+FDKTGTLT GKPEV V + E
Sbjct: 379 TVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNG-DERELLR 437
Query: 683 MATAAEANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDRTVLV 742
+A AE SEHPIA+A+V+ A + +LG P + EV G GV V D +LV
Sbjct: 438 LAAIAERRSEHPIAEAIVKKALEHGIELGEP-------EKVEVIAGEGV---VAD-GILV 486
Query: 743 GNKRLMMAFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSS 802
GNKRLM F V V EV+ + K E+ A+T V+VA +GRV G AV+D +K A+ V
Sbjct: 487 GNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQE 546
Query: 803 LRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDG 862
L+ M I M+TGDNW +A AI++E+ + V AE P K+ ++K+LQ K + VA VGDG
Sbjct: 547 LKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAKEV-VAFVGDG 605
Query: 863 INDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWA 922
IND+PAL AD+G+A+G+G+DVA+E+ DIVLI+ L DVV AI LSRKT+S+I+ N WA
Sbjct: 606 INDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWA 665
Query: 923 LGYNVLAVPIAAGILYPFTGIRLPPWLAGACMAAXXXXXXXXXXXXXXYKKPLH 976
L YNV+ +P AAG+LYP G+ P AG MA Y P+
Sbjct: 666 LIYNVILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSLLLRNYVPPIR 719
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 50 RTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVE 109
RTV+ + + CA C SIE+ + +L GVE V+ A ++F I + IK +E
Sbjct: 4 RTVR--VTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIE 61
Query: 110 EAGFPVDD 117
+ G+ V D
Sbjct: 62 DLGYGVVD 69
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 24/61 (39%)
Query: 128 LRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHIVEAIEDAGF 187
+R+ GM C C +S+E A+ FD D + I IED G+
Sbjct: 6 VRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGY 65
Query: 188 G 188
G
Sbjct: 66 G 66
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 481 bits (1239), Expect = e-136, Method: Compositional matrix adjust.
Identities = 286/644 (44%), Positives = 392/644 (60%), Gaps = 36/644 (5%)
Query: 333 LLRWILCTPVQFIVGQRFYVGAYHALRRRSANMDVLVALGTNAAYFYSVYIAVKALTSNT 392
++ ++ P F G + A+ ALRRR+ NMDV+ ++G AA+ SV L
Sbjct: 34 FVQLLIALPAIFYSGSSIFKAAFSALRRRTLNMDVMYSMGVGAAFLASVLSTAGVLPRE- 92
Query: 393 FEGQDFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISE 452
F+ETS +L++F+LLG+ LE AK +T +A+ KL L TA ++ DG+ E
Sbjct: 93 ---YSFYETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIR-DGK-----E 143
Query: 453 MDINTQLMQKNDIIKILPGEKVPVDGVVTDGQSYVNESMITGEAKPIAKGPGDKVIGGTM 512
+ + + + DI+ + PGEK+PVDGVV +G+SYV+ESMI+GE P+ K GD+V G T+
Sbjct: 144 IAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATI 203
Query: 513 NENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWL 572
N G L+++AT VG ET L+QIV+LVE A ++ P+Q+LAD++ +F+P V+ A ++
Sbjct: 204 NNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFI 263
Query: 573 GWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKGASL 632
W+ A L A I+VLVVACPCA GLATPTA+ V GKGA L
Sbjct: 264 YWYFIAHAPLL-------------FAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAEL 310
Query: 633 GVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAEANSE 692
G+LIK +ALE A KV V+FDKTGTLT GKPEV V + E +A AE SE
Sbjct: 311 GILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNG-DERELLRLAAIAERRSE 369
Query: 693 HPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDRTVLVGNKRLMMAFH 752
HPIA+A+V+ A + +LG P + EV G GV V D +LVGNKRLM F
Sbjct: 370 HPIAEAIVKKALEHGIELGEP-------EKVEVIAGEGV---VAD-GILVGNKRLMEDFG 418
Query: 753 VPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIM 812
V V EV+ + K E+ A+T V+VA +GRV G AV+D +K A+ V L+ M I M
Sbjct: 419 VAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGM 478
Query: 813 VTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAA 872
+TGDNW +A AI++E+ + V AE P K+ ++K+LQ K + VA VGDGIND+PAL A
Sbjct: 479 ITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAKEV-VAFVGDGINDAPALAQA 537
Query: 873 DVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAVPI 932
D+G+A+G+G+DVA+E+ DIVLI+ L DVV AI LSRKT+S+I+ N WAL YNV+ +P
Sbjct: 538 DLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVILIPA 597
Query: 933 AAGILYPFTGIRLPPWLAGACMAAXXXXXXXXXXXXXXYKKPLH 976
AAG+LYP G+ P AG MA Y P+
Sbjct: 598 AAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSLLLRNYVPPIR 641
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 449 bits (1156), Expect = e-126, Method: Compositional matrix adjust.
Identities = 268/678 (39%), Positives = 393/678 (57%), Gaps = 53/678 (7%)
Query: 290 RNRFFISCLFSVPVLLFSMVLPMIPTYGNWLDYKVHNMLTIGMLLRWI---LCTPVQFIV 346
R RF+I+ + ++PV++ M G+ L + + G WI L TPV
Sbjct: 82 RRRFWIALMLTIPVVILEM-------GGHGLKHFIS-----GNGSSWIQLLLATPVVLWG 129
Query: 347 GQRFYVGAYHALRRRSANMDVLVALGTNAAYFYS-VYIAVKALTSNTFEGQD-----FFE 400
G F+ + +L+ NM L+A+G A+ YS V + + + F Q+ +FE
Sbjct: 130 GWPFFKRGWQSLKTGQLNMFTLIAMGIGVAWIYSMVAVLWPGVFPHAFRSQEGVVAVYFE 189
Query: 401 TSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLM 460
+A++ + +LLG+ LE+ A+ +T A+ L L P++AH + DG SE +++ +
Sbjct: 190 AAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDG-----SEEEVSLDNV 244
Query: 461 QKNDIIKILPGEKVPVDGVVTDGQSYVNESMITGEAKPIAKGPGDKVIGGTMNENGCLQV 520
D++++ PGEK+PVDG V +G+S+V+ESM+TGE P+AK KVIG T+N+ G +
Sbjct: 245 AVGDLLRVRPGEKIPVDGEVQEGRSFVDESMVTGEPIPVAKEASAKVIGATINQTGSFVM 304
Query: 521 KATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVA 580
KA HVGS+T L++IVQ+V AQ +RAP+Q+LAD +S +FVP V+ A ++++ W + G
Sbjct: 305 KALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIVWALLG-- 362
Query: 581 GLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKGASLGVLIKGGN 640
P+ L +SVL++ACPCALGLATP ++MV GKGA GVLIK
Sbjct: 363 --------PQ--PALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAE 412
Query: 641 ALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAEANSEHPIAKAVV 700
ALE+ KV T+V DKTGTLT G P++ + ++ F + +A A E SEHP+A A+V
Sbjct: 413 ALERMEKVNTLVVDKTGTLTEGHPKL-TRIVTDDFVEDNALALAAALEHQSEHPLANAIV 471
Query: 701 EHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDRTVLVGNKRLMMAF---HVPVGP 757
AK+ LGS + FE TG GV G+V V +GN RLM + P+
Sbjct: 472 HAAKEKGLSLGS-------VEAFEAPTGKGVVGQVDGHHVAIGNARLMQEHGGDNAPLFE 524
Query: 758 EVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDN 817
+ D+ K + + +A+DG+ V DP+K + L+ I +M+TGD+
Sbjct: 525 KADELRGKGA----SVMFMAVDGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDS 580
Query: 818 WATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMA 877
TA A+A +GI KV AE P K+ + EL+ KG+ VAM GDG+ND+PAL AD+G+A
Sbjct: 581 KRTAEAVAGTLGIKKVVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIA 640
Query: 878 IGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAVPIAAGIL 937
+G GTDVAIE+A + L+ L + A LS T+S IR N +A YNVL VP+AAG+L
Sbjct: 641 MGTGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYNVLGVPLAAGVL 700
Query: 938 YPFTGIRLPPWLAGACMA 955
YP TG+ L P +A A MA
Sbjct: 701 YPLTGLLLSPMIAAAAMA 718
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 238 bits (607), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 144/289 (49%), Positives = 189/289 (65%), Gaps = 13/289 (4%)
Query: 628 KGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAA 687
KGA LG+LIK +ALE A KV V+FDKTGTLT GKPEV V + E +A A
Sbjct: 12 KGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL-NGDERELLRLAAIA 70
Query: 688 EANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDRTVLVGNKRL 747
E SEHPIA+A+V+ A + +LG P + EV G GV V D +LVGNKRL
Sbjct: 71 ERRSEHPIAEAIVKKALEHGIELGEPEK-------VEVIAGEGV---VAD-GILVGNKRL 119
Query: 748 MMAFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSME 807
M F V V EV+ + K E+ A+T V+VA +GRV G AV+D +K A+ V L+ M
Sbjct: 120 MEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMG 179
Query: 808 ISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSP 867
I M+TGDNW +A AI++E+ + V AE P K+ ++K+LQ K + VA VGDGIND+P
Sbjct: 180 IKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAKEV-VAFVGDGINDAP 238
Query: 868 ALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIR 916
AL AD+G+A+G+G+DVA+E+ DIVLI+ L DVV AI LSRKT+S+I+
Sbjct: 239 ALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 236 bits (602), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 143/289 (49%), Positives = 188/289 (65%), Gaps = 13/289 (4%)
Query: 628 KGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAA 687
KGA LG+LIK +ALE A KV V+FDKTGTLT GKPEV V + E +A A
Sbjct: 12 KGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL-NGDERELLRLAAIA 70
Query: 688 EANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDRTVLVGNKRL 747
E SE PIA+A+V+ A + +LG P + EV G GV V D +LVGNKRL
Sbjct: 71 ERRSEQPIAEAIVKKALEHGIELGEPEK-------VEVIAGEGV---VAD-GILVGNKRL 119
Query: 748 MMAFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSME 807
M F V V EV+ + K E+ A+T V+VA +GRV G AV+D +K A+ V L+ M
Sbjct: 120 MEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMG 179
Query: 808 ISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSP 867
I M+TGDNW +A AI++E+ + V AE P K+ ++K+LQ K + VA VGDGIND+P
Sbjct: 180 IKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAKEV-VAFVGDGINDAP 238
Query: 868 ALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIR 916
AL AD+G+A+G+G+DVA+E+ DIVLI+ L DVV AI LSRKT+S+I+
Sbjct: 239 ALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/278 (47%), Positives = 175/278 (62%), Gaps = 13/278 (4%)
Query: 637 KGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAEANSEHPIA 696
K +ALE A KV V+FDKTGTLT GKPEV V + E +A AE SEHPIA
Sbjct: 1 KNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPL-NGDERELLRLAAIAERRSEHPIA 59
Query: 697 KAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDRTVLVGNKRLMMAFHVPVG 756
+A+V+ A + +LG P + EV G GV V D +LVGNKRL F V V
Sbjct: 60 EAIVKKALEHGIELGEPEK-------VEVIAGEGV---VAD-GILVGNKRLXEDFGVAVS 108
Query: 757 PEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGD 816
EV+ + K E+ A+T V+VA +GRV G AV+D +K A+ V L+ I +TGD
Sbjct: 109 NEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRXGIKVGXITGD 168
Query: 817 NWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGM 876
NW +A AI++E+ + V AE P K+ ++K+LQ K + VA VGDGIND+PAL AD+G+
Sbjct: 169 NWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAKEV-VAFVGDGINDAPALAQADLGI 227
Query: 877 AIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISR 914
A+G+G+DVA+E+ DIVLI+ L DVV AI LSRKT S+
Sbjct: 228 AVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTXSK 265
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/283 (42%), Positives = 174/283 (61%), Gaps = 13/283 (4%)
Query: 640 NALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAEANSEHPIAKAV 699
A E+A ++ V+FDKTGTLT G+ V V F+H S +E +A + EA SEHPIA A+
Sbjct: 5 QAFERAKDLQAVIFDKTGTLTEGRFGVTDIVGFNH-SEDELLQIAASLEARSEHPIAAAI 63
Query: 700 VEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDRTVLVGNKRLMMAFHVPVGPEV 759
VE A+K L +E ++F G GV G V R +V + + +G +
Sbjct: 64 VEEAEKRGFGL-------TEVEEFRAIPGKGVEGIVNGRRYMV----VSPGYIRELGIKT 112
Query: 760 DDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWA 819
D+ + K +Q +T V + +G V+G A+ D ++PE++ +S L+++ I +M+TGDN
Sbjct: 113 DESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRF 172
Query: 820 TANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIG 879
A +A+E+G+ FAE P KA K+KE+Q K +T AMVGDG+ND+PAL ADVG+AIG
Sbjct: 173 VAKWVAEELGLDDYFAEVLPHEKAEKVKEVQQKYVT-AMVGDGVNDAPALAQADVGIAIG 231
Query: 880 AGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWA 922
AGTDVA+E ADIVL+++ DV ++LSRKT S+ W+
Sbjct: 232 AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKFHGLSAWS 274
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/276 (42%), Positives = 173/276 (62%), Gaps = 13/276 (4%)
Query: 640 NALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAEANSEHPIAKAV 699
A E+A ++ V+FDKTGTLT G+ V V F+H S +E +A + EA SEHPIA A+
Sbjct: 5 QAFERAKDLQAVIFDKTGTLTEGRFGVTDIVGFNH-SEDELLQIAASLEARSEHPIAAAI 63
Query: 700 VEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDRTVLVGNKRLMMAFHVPVGPEV 759
VE A+K L +E ++F G GV G V R +V + + +G +
Sbjct: 64 VEEAEKRGFGL-------TEVEEFRAIPGKGVEGIVNGRRYMV----VSPGYIRELGIKT 112
Query: 760 DDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWA 819
D+ + K +Q +T V + +G V+G A+ D ++PE++ +S L+++ I +M+TGDN
Sbjct: 113 DESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRF 172
Query: 820 TANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIG 879
A +A+E+G+ FAE P KA K+KE+Q K +T AMVGDG+ND+PAL ADVG+AIG
Sbjct: 173 VAKWVAEELGLDDYFAEVLPHEKAEKVKEVQQKYVT-AMVGDGVNDAPALAQADVGIAIG 231
Query: 880 AGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRI 915
AGTDVA+E ADIVL+++ DV ++LSRKT S++
Sbjct: 232 AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKL 267
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 89/119 (74%)
Query: 424 SDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVVTDG 483
S+ALAKL L A ++TLD + ++SE ++ +L+Q+ DIIK++PG K PVDG V +G
Sbjct: 6 SEALAKLISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEG 65
Query: 484 QSYVNESMITGEAKPIAKGPGDKVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQ 542
S V+ES+ITGEA P+AK PG VI G++N+NG L + ATHVG++T LSQIV+LVE AQ
Sbjct: 66 HSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSLLICATHVGADTTLSQIVKLVEEAQ 124
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 148/282 (52%), Gaps = 36/282 (12%)
Query: 633 GVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAEANSE 692
G++IK N EK ++ T++FDKTGTLT G P +V+ + S+ A + EA S
Sbjct: 13 GMIIKNSNVYEKIKEIDTIIFDKTGTLTYGTP-IVTQFIGDSLSLA----YAASVEALSS 67
Query: 693 HPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDRTVLVGNKRLMMAFH 752
HPIAKA+V++AK+ K+ E KDF+ +G GV GK+ D+ +
Sbjct: 68 HPIAKAIVKYAKEQGVKI-------LEVKDFKEISGIGVRGKISDKII------------ 108
Query: 753 VPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIM 812
EV N+ + V I+G +F ++D +P + + L++ + I+
Sbjct: 109 -----EVKKAENNND------IAVYINGEPIASFNISDVPRPNLKDYLEKLKNEGLKIII 157
Query: 813 VTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAA 872
++GD ++KE+ I + ++ P K I++L+ G V M+GDG+ND+ AL A
Sbjct: 158 LSGDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALA 217
Query: 873 DVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISR 914
DV +A+G G D++ ADI+L+ + + ++ I +RK +S
Sbjct: 218 DVSVAMGNGVDISKNVADIILVSNDIGTLLGLIK-NRKRLSN 258
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 148/282 (52%), Gaps = 36/282 (12%)
Query: 633 GVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAEANSE 692
G++IK N EK ++ T++F+KTGTLT G P +V+ + S+ A + EA S
Sbjct: 13 GMIIKNSNVYEKIKEIDTIIFNKTGTLTYGTP-IVTQFIGDSLSLA----YAASVEALSS 67
Query: 693 HPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDRTVLVGNKRLMMAFH 752
HPIAKA+V++AK+ K+ E KDF+ +G GV GK+ D+ +
Sbjct: 68 HPIAKAIVKYAKEQGVKI-------LEVKDFKEISGIGVRGKISDKII------------ 108
Query: 753 VPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIM 812
EV N+ + V I+G +F ++D +P + + L++ + I+
Sbjct: 109 -----EVKKAENNND------IAVYINGEPIASFNISDVPRPNLKDYLEKLKNEGLKIII 157
Query: 813 VTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAA 872
++GD ++KE+ I + ++ P K I++L+ G V M+GDG+ND+ AL A
Sbjct: 158 LSGDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALA 217
Query: 873 DVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISR 914
DV +A+G G D++ ADI+L+ + + ++ I +RK +S
Sbjct: 218 DVSVAMGNGVDISKNVADIILVSNDIGTLLGLIK-NRKRLSN 258
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 148/282 (52%), Gaps = 36/282 (12%)
Query: 633 GVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAEANSE 692
G++IK N EK ++ T++F+KTGTLT G P +V+ + S+ A + EA S
Sbjct: 13 GMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTP-IVTQFIGDSLSLA----YAASVEALSS 67
Query: 693 HPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDRTVLVGNKRLMMAFH 752
HPIAKA+V++AK+ K+ E KDF+ +G GV GK+ D+ +
Sbjct: 68 HPIAKAIVKYAKEQGVKI-------LEVKDFKEISGIGVRGKISDKII------------ 108
Query: 753 VPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIM 812
EV N+ + V I+G +F ++D +P + + L++ + I+
Sbjct: 109 -----EVKKAENNND------IAVYINGEPIASFNISDVPRPNLKDYLEKLKNEGLKIII 157
Query: 813 VTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAA 872
++GD ++KE+ I + ++ P K I++L+ G V M+GDG+ND+ AL A
Sbjct: 158 LSGDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALA 217
Query: 873 DVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISR 914
DV +A+G G D++ ADI+L+ + + ++ I +RK +S
Sbjct: 218 DVSVAMGNGVDISKNVADIILVSNDIGTLLGLIK-NRKRLSN 258
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 126/516 (24%), Positives = 212/516 (41%), Gaps = 67/516 (12%)
Query: 464 DIIKILPGEKVPVDG--VVTDGQSYVNESMITGEAKPIAKGPGDKVIGGTMNENGCLQVK 521
DI+++ G +P DG V D V++S +TGE+ + K GD+V + + G V
Sbjct: 200 DILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGEAFVV 259
Query: 522 ATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAG 581
T G T + + LV AA ++ + I + +V+ I W V+
Sbjct: 260 ITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVW-------VSS 312
Query: 582 LYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKGASLGVLIKGGNA 641
Y + I ++ L+F +++ ++ P L T + V A +++ +A
Sbjct: 313 FYRSNPIVQI-------LEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSA 365
Query: 642 LEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAEANSEHPIAKAVVE 701
+E V+ + DKTGTLT K + + E+ A A + + I A+ +
Sbjct: 366 IESLAGVEILCSDKTGTLTKNKLSLHDPYTVAGVDPEDLMLTACLAASRKKKGI-DAIDK 424
Query: 702 HAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKV--------GDRTVLVGNKRLMMAFHV 753
K + S+ K + H VS KV G+R V L + V
Sbjct: 425 AFLKSLKYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTV 484
Query: 754 ----PVGPEVDD-YMMKNEQLA----RTCVLVAIDG----RVAGAFAVTDPVKPEAQIVV 800
P+ EVD Y K + A R+ + G + G DP + + V
Sbjct: 485 EEDHPIPEEVDQAYKNKVAEFATRGFRSLGVARKRGEGSWEILGIMPCMDPPRHDTYKTV 544
Query: 801 SSLRSMEISSIMVTGDNWATANAIAKEVGIGKV--------------------------- 833
+++ +S M+TGD A ++++G+G
Sbjct: 545 CEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSEVYDFVEAA 604
Query: 834 --FAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADI 891
FAE P K N ++ LQ +G VAM GDG+ND+P+L AD G+A+ +D A AADI
Sbjct: 605 DGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSSDAARSAADI 664
Query: 892 VLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNV 927
V + L ++ A+ SR+ R+ V+ + ++
Sbjct: 665 VFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSI 700
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 79/117 (67%), Gaps = 6/117 (5%)
Query: 425 DALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVVTDGQ 484
+A+ KL L TA ++ DG+ E+ + + + DI+ + PGEK+PVDGVV +G+
Sbjct: 1 EAIKKLVGLQAKTAVVIR-DGK-----EIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGE 54
Query: 485 SYVNESMITGEAKPIAKGPGDKVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAA 541
SYV+ESMI+GE P+ K GD+V G T+N G L+++AT VG ET L+QIV+LVE A
Sbjct: 55 SYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDA 111
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 72/114 (63%), Gaps = 9/114 (7%)
Query: 792 VKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQL 851
+K A+ V L+ I +TGDNW +A AI++E+ + V AE P K+ ++K+LQ
Sbjct: 23 LKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQA 82
Query: 852 KGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAI 905
K + VA VGDGIND+PAL AD+G+A+G+G DIVLI+ L DVV AI
Sbjct: 83 KEV-VAFVGDGINDAPALAQADLGIAVGSG--------DIVLIRDDLRDVVAAI 127
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 640 NALEKAHKVKTVVFDKTGTLT 660
+ALE A KV V+FDKTGTLT
Sbjct: 1 DALEVAEKVTAVIFDKTGTLT 21
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 88/198 (44%), Gaps = 54/198 (27%)
Query: 784 GAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVG-------------- 829
G A+ DP + V RS I IMVTGD+ TA AIAK VG
Sbjct: 592 GLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAA 651
Query: 830 -----IGKV----------------------------------FAETDPVGKANKIKELQ 850
IG+V FA T P K ++ Q
Sbjct: 652 RLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQ 711
Query: 851 LKGMTVAMVGDGINDSPALVAADVGMAIG-AGTDVAIEAADIVLIKSSLEDVVTAIDLSR 909
+G VA+ GDG+NDSPAL AD+G+A+G +G+DV+ +AAD++L+ + +VT ++ R
Sbjct: 712 RQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGR 771
Query: 910 KTISRIRLNYVWALGYNV 927
++ + + L N+
Sbjct: 772 LIFDNLKKSIAYTLTSNI 789
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 107/256 (41%), Gaps = 33/256 (12%)
Query: 420 KGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVD-G 478
+ K+S + ++ P A L+ DGE + I N + + D++++ G+++P D
Sbjct: 156 EAKSSRIMDSFKNMVPQQA-LVIRDGEKSTI-----NAEFVVAGDLVEVKGGDRIPADLR 209
Query: 479 VVTDGQSYVNESMITGEAKPIAKGPGDKVIGGTMNEN------GCLQVKA----THVGSE 528
+++ V+ S +TGE++P + P N C++ A + G
Sbjct: 210 IISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDR 269
Query: 529 TALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWI 588
T + +I L ++ R P+ + ++ A + +FI + Y W+
Sbjct: 270 TVMGRIATLASGLEVGRTPIAIEIEHFIH----IITGVAVFLGVSFFILSLILGY--SWL 323
Query: 589 PKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKG-ASLGVLIKGGNALEKAHK 647
V+ F I ++V P L LAT T + T K A L+K A+E
Sbjct: 324 EAVI--------FLIGIIVANVPEGL-LATVTVCLTLTAKRMARKNCLVKNLEAVETLGS 374
Query: 648 VKTVVFDKTGTLTVGK 663
T+ DKTGTLT +
Sbjct: 375 TSTICSDKTGTLTQNR 390
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 31/180 (17%)
Query: 779 DGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI-------- 830
D G + DP + E + R I IM+TGDN TA AI + +GI
Sbjct: 591 DLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVA 650
Query: 831 -----GK------------------VFAETDPVGKANKIKELQLKGMTVAMVGDGINDSP 867
G+ FA +P K+ ++ LQ AM GDG+ND+P
Sbjct: 651 DRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAP 710
Query: 868 ALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNV 927
AL A++G+A+G+GT VA A+++VL + +V A++ R + ++ + + NV
Sbjct: 711 ALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNV 770
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 69/325 (21%), Positives = 140/325 (43%), Gaps = 39/325 (12%)
Query: 404 MLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKN 463
+LI+ ++G + E A+ +A+ L + P+ + D + S I + +
Sbjct: 98 ILIANAIVGVWQERNAE----NAIEALKEYEPEMGKVYRADRK----SVQRIKARDIVPG 149
Query: 464 DIIKILPGEKVPVDGVVTDGQS---YVNESMITGEAKPIAKG----PGDKVI-------- 508
DI+++ G+KVP D + +S V++S++TGE+ + K P + +
Sbjct: 150 DIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNML 209
Query: 509 --GGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQK----LADQISRFFVPM 562
G + L + AT G T + +I + A + + P+Q+ +Q+S+ + +
Sbjct: 210 FSGTNIAAGKALGIVAT-TGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKV-ISL 267
Query: 563 VVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAV 622
+ A ++ +G F V G WI + F++A+ ++ V A P L T +
Sbjct: 268 ICVAVWLINIGHFNDPVHG---GSWIRGAIYYFKIAV----ALAVAAIPEGLPAVITTCL 320
Query: 623 MVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCD 682
+ T + A +++ ++E + DKTGTLT + V + +FC
Sbjct: 321 ALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVD-GDFCS 379
Query: 683 MATAAEANSEHPIAKAVVEHAKKLR 707
+ + S + V+++ K +R
Sbjct: 380 LNEFSITGSTYAPEGEVLKNDKPIR 404
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 31/180 (17%)
Query: 779 DGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI-------- 830
D G + DP + E + R I IM+TGDN TA AI + +GI
Sbjct: 590 DLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVA 649
Query: 831 -----GK------------------VFAETDPVGKANKIKELQLKGMTVAMVGDGINDSP 867
G+ FA +P K+ ++ LQ AM GDG+ND+P
Sbjct: 650 DRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAP 709
Query: 868 ALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNV 927
AL A++G+A+G+GT VA A+++VL + +V A++ R + ++ + + NV
Sbjct: 710 ALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNV 769
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 69/325 (21%), Positives = 140/325 (43%), Gaps = 39/325 (12%)
Query: 404 MLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKN 463
+LI+ ++G + E A+ +A+ L + P+ + D + S I + +
Sbjct: 97 ILIANAIVGVWQERNAE----NAIEALKEYEPEMGKVYRADRK----SVQRIKARDIVPG 148
Query: 464 DIIKILPGEKVPVDGVVTDGQS---YVNESMITGEAKPIAKG----PGDKVI-------- 508
DI+++ G+KVP D + +S V++S++TGE+ + K P + +
Sbjct: 149 DIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNML 208
Query: 509 --GGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQK----LADQISRFFVPM 562
G + L + AT G T + +I + A + + P+Q+ +Q+S+ + +
Sbjct: 209 FSGTNIAAGKALGIVAT-TGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKV-ISL 266
Query: 563 VVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAV 622
+ A ++ +G F V G WI + F++A+ ++ V A P L T +
Sbjct: 267 ICVAVWLINIGHFNDPVHG---GSWIRGAIYYFKIAV----ALAVAAIPEGLPAVITTCL 319
Query: 623 MVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCD 682
+ T + A +++ ++E + DKTGTLT + V + +FC
Sbjct: 320 ALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVD-GDFCS 378
Query: 683 MATAAEANSEHPIAKAVVEHAKKLR 707
+ + S + V+++ K +R
Sbjct: 379 LNEFSITGSTYAPEGEVLKNDKPIR 403
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 31/180 (17%)
Query: 779 DGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI-------- 830
D G + DP + E + R I IM+TGDN TA AI + +GI
Sbjct: 590 DLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVA 649
Query: 831 -----GK------------------VFAETDPVGKANKIKELQLKGMTVAMVGDGINDSP 867
G+ FA +P K+ ++ LQ AM GDG+ND+P
Sbjct: 650 DRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAP 709
Query: 868 ALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNV 927
AL A++G+A+G+GT VA A+++VL + +V A++ R + ++ + + NV
Sbjct: 710 ALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNV 769
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 68/325 (20%), Positives = 139/325 (42%), Gaps = 39/325 (12%)
Query: 404 MLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKN 463
+LI+ ++G + E A+ +A+ L + P+ + D + S I + +
Sbjct: 97 ILIANAIVGVWQERNAE----NAIEALKEYEPEMGKVYRADRK----SVQRIKARDIVPG 148
Query: 464 DIIKILPGEKVPVDGVVTDGQS---YVNESMITGEAKPIAKG----PGDKVI-------- 508
DI+++ G+KVP D + +S V++S++TGE+ + K P + +
Sbjct: 149 DIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNML 208
Query: 509 --GGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQK----LADQISRFFVPM 562
G + L + AT G T + +I + A + + P+Q+ +Q+S+ + +
Sbjct: 209 FSGTNIAAGKALGIVAT-TGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKV-ISL 266
Query: 563 VVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAV 622
+ A ++ +G F V G WI + F++A+ ++ V A P L T +
Sbjct: 267 ICVAVWLINIGHFNDPVHG---GSWIRGAIYYFKIAV----ALAVAAIPEGLPAVITTCL 319
Query: 623 MVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCD 682
+ T + A +++ ++E + KTGTLT + V + +FC
Sbjct: 320 ALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFIIDKVD-GDFCS 378
Query: 683 MATAAEANSEHPIAKAVVEHAKKLR 707
+ + S + V+++ K +R
Sbjct: 379 LNEFSITGSTYAPEGEVLKNDKPIR 403
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 31/180 (17%)
Query: 779 DGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI-------- 830
D G + DP + E + R I IM+TGDN TA AI + +GI
Sbjct: 589 DLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDVA 648
Query: 831 -----GK------------------VFAETDPVGKANKIKELQLKGMTVAMVGDGINDSP 867
G+ FA +P K+ ++ LQ AM GDG+ND+P
Sbjct: 649 DRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQSFDEITAMTGDGVNDAP 708
Query: 868 ALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNV 927
AL A++G+A+G+GT VA A+++VL + +V A++ R + ++ + + NV
Sbjct: 709 ALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNV 768
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 139/325 (42%), Gaps = 39/325 (12%)
Query: 404 MLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKN 463
+LI+ ++G + E A+ +A+ L + P+ + D + S I + +
Sbjct: 97 ILIANAIVGVWQERNAE----NAIEALKEYEPEMGKVYRADRK----SVQRIKARDIVPG 148
Query: 464 DIIKILPGEKVPVDGVVTDGQS---YVNESMITGEAKPIAKG----PGDKVI-------- 508
DI+++ G+KVP D + +S V++S++TGE+ + K P + +
Sbjct: 149 DIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNML 208
Query: 509 --GGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQK----LADQISRFFVPM 562
G + + + AT G T + +I + A + + P+Q+ +Q+S+ + +
Sbjct: 209 FSGTNIAAGKAIGIVAT-TGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKV-ISL 266
Query: 563 VVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAV 622
+ A ++ +G F V G WI + F++A+ ++ V A P L T +
Sbjct: 267 ICVAVWLINIGHFNDPVHG---GSWIRGAIYYFKIAV----ALAVAAIPEGLPAVITTCL 319
Query: 623 MVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCD 682
+ T + A +++ ++E + DKTGTLT + V + + C
Sbjct: 320 ALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDRID-GDLCL 378
Query: 683 MATAAEANSEHPIAKAVVEHAKKLR 707
+ + S + V+++ K +R
Sbjct: 379 LNEFSVTGSTYAPEGEVLKNDKPVR 403
>pdb|2EW9|A Chain A, Solution Structure Of Apowln5-6
Length = 149
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 8/148 (5%)
Query: 126 CRLRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHIVEAIEDA 185
C L+IKGM C SC ++ER ++ +DP + I + I+D
Sbjct: 6 CFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDL 65
Query: 186 GFGADLIS--SGKDVNKVHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSY 243
GF A ++ +G D N + L + G+ + +++ L T G++ + L+ K V +
Sbjct: 66 GFEAAVMEDYAGSDGN-IELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKF 124
Query: 244 DPNLTGPRSIIQYLEEASHGPNIYHASL 271
DP + GPR II+ +EE +HASL
Sbjct: 125 DPEIIGPRDIIKIIEEIG-----FHASL 147
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 54 FKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAGF 113
+I+ + CASC ++IE L GV S +V+ + G+A +K+ P +I I + +++ GF
Sbjct: 8 LQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGF 67
Query: 114 P---VDDFPEQDIAVCRLRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDP 170
++D+ D + L I GM C SC ++E + FDP
Sbjct: 68 EAAVMEDYAGSDGNI-ELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDP 126
Query: 171 NLTDTDHIVEAIEDAGFGADL 191
+ I++ IE+ GF A L
Sbjct: 127 EIIGPRDIIKIIEEIGFHASL 147
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 43 YDGSKKLRTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAK 102
Y GS ++ I + CASC +IES L+ NG+ A V+ +A+VKF P +I +
Sbjct: 75 YAGSDG--NIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPR 132
Query: 103 RIKETVEEAGF 113
I + +EE GF
Sbjct: 133 DIIKIIEEIGF 143
>pdb|2VOY|J Chain J, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 118
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 71/129 (55%), Gaps = 12/129 (9%)
Query: 662 GKPEVVSAVLFSHFSMEEFCDMATAAEANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAK 721
GKPEV V + E +A AE SEHPIA+A+V+ A + +LG P +
Sbjct: 1 GKPEVTDLVPLNG-DERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEP-------E 52
Query: 722 DFEVHTGAGVSGKVGDRTVLVGNKRLMMAFHVPVGPEVDDYMMKNEQLARTCVLVAIDGR 781
EV G GV V D +LVGNKRL F V V EV+ + K E+ A+T V+VA +GR
Sbjct: 53 KVEVIAGEGV---VAD-GILVGNKRLXEDFGVAVSNEVELALEKLEREAKTAVIVARNGR 108
Query: 782 VAGAFAVTD 790
V G AV+D
Sbjct: 109 VEGIIAVSD 117
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 87/199 (43%), Gaps = 54/199 (27%)
Query: 783 AGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET----- 837
AG ++ DP + V R+ I IMVTGD+ TA AIA VGI +ET
Sbjct: 596 AGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETVEDIA 655
Query: 838 ----DPVGKANK-------IKELQLK---------------------------------- 852
PV + N+ I +QLK
Sbjct: 656 ARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESC 715
Query: 853 ---GMTVAMVGDGINDSPALVAADVGMAIG-AGTDVAIEAADIVLIKSSLEDVVTAIDLS 908
G VA+ GDG+NDSPAL AD+G+A+G AG+D A AAD++L+ + +VT ++
Sbjct: 716 QRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQG 775
Query: 909 RKTISRIRLNYVWALGYNV 927
R ++ + + L N+
Sbjct: 776 RLIFDNLKKSIAYTLTKNI 794
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 116/271 (42%), Gaps = 33/271 (12%)
Query: 405 LISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKND 464
LI+ +++ + K+++ +A +L P A ++ DG+ + IN + D
Sbjct: 146 LIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIR-DGD-----KFQINADQLVVGD 199
Query: 465 IIKILPGEKVPVDGVVTDGQSY-VNESMITGEAKPIAKGP----------GDKVIGGTMN 513
++++ G++VP D + Q V+ S +TGE++P + P + TM
Sbjct: 200 LVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMC 259
Query: 514 ENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLG 573
G Q + G T + +I L + + P+ A +I F V ++ A +
Sbjct: 260 LEGTAQGLVVNTGDRTIIGRIASLASGVENEKTPI---AIEIEHF-VDIIAGLAILFGAT 315
Query: 574 WFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKG-ASL 632
+FI + Y F A+ F ++++V P L LAT T + T K AS
Sbjct: 316 FFIVAMCIGY----------TFLRAMVFFMAIVVAYVPEGL-LATVTVCLSLTAKRLASK 364
Query: 633 GVLIKGGNALEKAHKVKTVVFDKTGTLTVGK 663
++K A+E + DKTGTLT +
Sbjct: 365 NCVVKNLEAVETLGSTSVICSDKTGTLTQNR 395
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 84/192 (43%), Gaps = 37/192 (19%)
Query: 784 GAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKV---------- 833
G + DP + ++ + ++ ++ M+TGD A + +G+G
Sbjct: 481 GLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGT 540
Query: 834 --------------------FAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAAD 873
FA P K +K+LQ + V M GDG+ND+PAL AD
Sbjct: 541 HKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKAD 600
Query: 874 VGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAVPIA 933
+G+A+ TD A A+DIVL + L +++A+ SR R++ Y + AV I
Sbjct: 601 IGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMK-------NYTIYAVSIT 653
Query: 934 AGILYPFTGIRL 945
I++ F I L
Sbjct: 654 IRIVFGFMLIAL 665
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 23/208 (11%)
Query: 464 DIIKILPGEKVPVDGVVTDGQSY-VNESMITGEAKPIAKGPGDKVIGGTMNENGCLQVKA 522
DI+ I G+ +P D + +G V++S +TGE+ P+ K PG +V G+ + G ++
Sbjct: 152 DIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGQEVFSGSTCKQGEIEAVV 211
Query: 523 THVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGL 582
G T + LV++ QK+ I F + + I + +
Sbjct: 212 IATGVHTFFGKAAHLVDSTNQV-GHFQKVLTAIGNFCICSIAIGMVIE--------IIVM 262
Query: 583 YPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKG----ASLGVLIKG 638
YP + GI L+V + +A PT + V G + G + K
Sbjct: 263 YPIQ---------RRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKR 313
Query: 639 GNALEKAHKVKTVVFDKTGTLTVGKPEV 666
A+E+ + + DKTGTLT+ K V
Sbjct: 314 MTAIEEMAGMDVLCSDKTGTLTLNKLSV 341
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 54/198 (27%)
Query: 784 GAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET------ 837
G ++ DP + V RS I IMVTGD+ TA AIAK VGI ET
Sbjct: 556 GLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAA 615
Query: 838 ---DPVGKANK--------------------------------------------IKELQ 850
PV + N ++ Q
Sbjct: 616 RLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQ 675
Query: 851 LKGMTVAMVGDGINDSPALVAADVGMAIG-AGTDVAIEAADIVLIKSSLEDVVTAIDLSR 909
+G VA+ GDG+NDSPA AD+G+A+G AG+DV+ +AAD++L+ + +VT ++ R
Sbjct: 676 RQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGR 735
Query: 910 KTISRIRLNYVWALGYNV 927
++ + + L N+
Sbjct: 736 LIFDNLKKSIAYTLTSNI 753
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 420 KGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVD-G 478
+ K+S + ++ P A L+ +GE +M IN + + D++++ G+++P D
Sbjct: 120 EAKSSKIMESFKNMVPQQA-LVIRNGE-----KMSINAEEVVVGDLVEVKGGDRIPADLR 173
Query: 479 VVTDGQSYVNESMITGEAKPIAKGPGDKVIGGTMNEN------------GCLQVKA---- 522
+++ V+ S +TGE++P + P NEN C++ A
Sbjct: 174 IISANGCKVDNSSLTGESEPQTRSPD------FTNENPLETRNIAFFSTNCVEGTARGIV 227
Query: 523 THVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGL 582
+ G T + +I L + + P+ A +I F + ++ A + +FI +
Sbjct: 228 VYTGDRTVMGRIATLASGLEGGQTPI---AAEIEHF-IHIITGVAVFLGVSFFILSLILE 283
Query: 583 YPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKG-ASLGVLIKGGNA 641
Y W+ V+ F I ++V P L LAT T + T K A L+K A
Sbjct: 284 YT--WLEAVI--------FLIGIIVANVPEGL-LATVTVCLTLTAKRMARKNCLVKNLEA 332
Query: 642 LEKAHKVKTVVFDKTGTLTVGK 663
+E T+ KTGTLT +
Sbjct: 333 VETLGSTSTICSXKTGTLTQNR 354
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 54/198 (27%)
Query: 784 GAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET------ 837
G ++ DP + V RS I IMVTGD+ TA AIAK VGI ET
Sbjct: 562 GLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAA 621
Query: 838 ---DPVGKANK--------------------------------------------IKELQ 850
PV + N ++ Q
Sbjct: 622 RLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQ 681
Query: 851 LKGMTVAMVGDGINDSPALVAADVGMAIG-AGTDVAIEAADIVLIKSSLEDVVTAIDLSR 909
+G VA+ GDG+NDSPA AD+G+A+G AG+DV+ +AAD++L+ + +VT ++ R
Sbjct: 682 RQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGR 741
Query: 910 KTISRIRLNYVWALGYNV 927
++ + + L N+
Sbjct: 742 LIFDNLKKSIAYTLTSNI 759
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 119/278 (42%), Gaps = 45/278 (16%)
Query: 404 MLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKN 463
+L + +++ + K+S + ++ P A L+ +GE +M IN + +
Sbjct: 110 VLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQA-LVIRNGE-----KMSINAEEVVVG 163
Query: 464 DIIKILPGEKVPVD-GVVTDGQSYVNESMITGEAKPIAKGPGDKVIGGTMNEN------- 515
D++++ G+++P D +++ V+ S +TGE++P + P NEN
Sbjct: 164 DLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPD------FTNENPLETRNI 217
Query: 516 -----GCLQVKA----THVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAA 566
C++ A + G T + +I L + + P+ A +I F + ++
Sbjct: 218 AFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQTPI---AAEIEHF-IHIITGV 273
Query: 567 AFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVAT 626
A + +FI + Y W+ V+ F I ++V P L LAT T + T
Sbjct: 274 AVFLGVSFFILSLILEYT--WLEAVI--------FLIGIIVANVPEGL-LATVTVCLTLT 322
Query: 627 GKG-ASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGK 663
K A L+K A+E T+ DKTGTLT +
Sbjct: 323 AKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNR 360
>pdb|2KOY|A Chain A, Structure Of The E1064a Mutant Of The N-Domain Of Wilson
Disease Associated Protein
Length = 141
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 16/115 (13%)
Query: 687 AEANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDR-------- 738
A A+SEHP+ AV ++ K ++LG TE DF+ G G+ KV +
Sbjct: 32 AAASSEHPLGVAVTKYCK---EELG--TETLGYCTDFQAVPGCGIGCKVSNVEGILAAVP 86
Query: 739 ---TVLVGNKRLMMAFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTD 790
+VL+GN+ + + + +V D M +E +T +LVAIDG + G A+ D
Sbjct: 87 QTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQTAILVAIDGVLCGMIAIAD 141
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 51 TVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEE 110
T I + CASC SIE ++S L GV+ VS EG A V + P +I+ + ++ +E+
Sbjct: 123 TTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIED 182
Query: 111 AGF 113
GF
Sbjct: 183 MGF 185
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 41/179 (22%), Positives = 63/179 (35%), Gaps = 32/179 (17%)
Query: 51 TVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEE 110
T++ +I + C SC +IE + L GV+S VS A VK+ P + ++ +E
Sbjct: 21 TLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIE- 79
Query: 111 AGFPVDDFP---------------------------EQDIAVCR---LRIKGMMCTSCSE 140
P +F Q C + I GM C SC
Sbjct: 80 -ALPPGNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVH 138
Query: 141 SVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHIVEAIEDAGFGADLISSGKDVN 199
S+E I ++P + + + AIED GF A ++S N
Sbjct: 139 SIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSESCSTN 197
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 38/180 (21%), Positives = 65/180 (36%), Gaps = 27/180 (15%)
Query: 123 IAVCRLRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHIVEAI 182
+ +LRI GM C SC ++E I +DP+ T + AI
Sbjct: 19 VVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAI 78
Query: 183 EDAGFGADLIS-------SGKD-------------VNKVH-------LKLEGLNSSEDAT 215
E G +S SG D N+V + + G+ +
Sbjct: 79 EALPPGNFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVH 138
Query: 216 FVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEEASHGPNIYHASLYTPP 275
++ + +GV Q+ + L+E TV Y+P + P + +E+ ++ S T P
Sbjct: 139 SIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSESCSTNP 198
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 32/69 (46%)
Query: 195 GKDVNKVHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSII 254
G V + L+++G++ ++ + GV +++ L V YDP+ T P ++
Sbjct: 16 GSHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQ 75
Query: 255 QYLEEASHG 263
+ +E G
Sbjct: 76 RAIEALPPG 84
>pdb|2ARF|A Chain A, Solution Structure Of The Wilson Atpase N-Domain In The
Presence Of Atp
Length = 165
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 40/139 (28%)
Query: 687 AEANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDR-------- 738
AEA+SEHP+ AV ++ K ++LG TE DF+ G G+ KV +
Sbjct: 32 AEASSEHPLGVAVTKYCK---EELG--TETLGYCTDFQAVPGCGIGCKVSNVEGILAHSE 86
Query: 739 ---------------------------TVLVGNKRLMMAFHVPVGPEVDDYMMKNEQLAR 771
+VL+GN+ + + + +V D M +E +
Sbjct: 87 RPLSAPASHLNEAGSLPAEKDAVPQTFSVLIGNREWLRRNGLTISSDVSDAMTDHEMKGQ 146
Query: 772 TCVLVAIDGRVAGAFAVTD 790
T +LVAIDG + G A+ D
Sbjct: 147 TAILVAIDGVLCGMIAIAD 165
>pdb|3DXS|X Chain X, Crystal Structure Of A Copper Binding Domain From Hma7, A
P- Type Atpase
Length = 74
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 49 LRTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETV 108
+R ++ + + CA+C+ S+E+ L N+NGV A V+ L+ +A V F P L+ + IKE +
Sbjct: 1 MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEI 60
Query: 109 EEAGFPVDDFPEQ 121
E+AGF + E+
Sbjct: 61 EDAGFEAEILAEE 73
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 130 IKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHIVEAIEDAGFGA 189
+ GM C +CS SVE A+ FDPNL + I E IEDAGF A
Sbjct: 8 VTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEA 67
Query: 190 DLIS 193
++++
Sbjct: 68 EILA 71
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 52 VKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEA 111
+K K+ + C SC ++IE + L GV+ VS +A + + P LI+ + +K+ +E
Sbjct: 11 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAM 70
Query: 112 GFP 114
GFP
Sbjct: 71 GFP 73
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 125 VCRLRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHIVEAIED 184
V +++++GM C SC+ ++E I + P+L + + + IE
Sbjct: 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEA 69
Query: 185 AGFGA 189
GF A
Sbjct: 70 MGFPA 74
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/58 (20%), Positives = 30/58 (51%)
Query: 201 VHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLE 258
+ +K+EG+ + ++ + QGV ++++ L + T+ Y P+L + + +E
Sbjct: 11 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIE 68
>pdb|2KMV|A Chain A, Solution Structure Of The Nucleotide Binding Domain Of The
Human Menkes Protein In The Atp-Free Form
pdb|2KMX|A Chain A, Solution Structure Of The Nucleotide Binding Domain Of The
Human Menkes Protein In The Atp-Bound Form
Length = 185
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 740 VLVGNKRLMMAFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTD 790
VL+GN+ M+ + + +V+D+M ++E+ RT VLVA+D + G A+ D
Sbjct: 134 VLIGNREWMIRNGLVINNDVNDFMTEHERKGRTAVLVAVDDELCGLIAIAD 184
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 653 FDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAEANSEHPIAKAVVEHAKKLRQKLGS 712
F GT V + +V++ + S + + AE+NSEHP+ A+ ++ K Q+L
Sbjct: 2 FTMHGTPVVNQVKVLTE--SNRISHHKILAIVGTAESNSEHPLGTAITKYCK---QEL-- 54
Query: 713 PTEHASEAKDFEVHTGAGVSGKV 735
TE DF+V G G+S KV
Sbjct: 55 DTETLGTCIDFQVVPGCGISCKV 77
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes Protein
Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I) Form
Of The Second Metal-Binding Domain Of The Menkes Protein
Atp7a
Length = 76
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 52 VKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEA 111
+K K+ + C SC ++IE + L GV+ VS +A + + P LI+ + +K+ +E
Sbjct: 5 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAM 64
Query: 112 GFP 114
GFP
Sbjct: 65 GFP 67
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 203 LKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLE 258
+K+EG+ + ++ + QGV ++++ L + T+ Y P+L + + +E
Sbjct: 7 MKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIE 62
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 125 VCRLRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHIVEAIED 184
V +++++GM C SC+ ++E I + P+L + + + IE
Sbjct: 4 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEA 63
Query: 185 AGFGA 189
GF A
Sbjct: 64 MGFPA 68
>pdb|1KVI|A Chain A, Solution Structure Of The Reduced Form Of The First Heavy
Metal Binding Motif Of The Menkes Protein
pdb|1KVJ|A Chain A, Solution Structure Of The Cu(I) Bound Form Of The First
Heavy Metal Binding Motif Of The Menkes Protein
Length = 79
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 44 DGSKKLRTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKR 103
D S + +V + + C SC +IE + +NGV VS E A + + P L T K
Sbjct: 2 DPSMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKT 61
Query: 104 IKETVEEAGF 113
++E +++ GF
Sbjct: 62 LQEAIDDMGF 71
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 198 VNKVHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYL 257
VN V + +EG+ + ++ + GV +++ L E T+ YDP L P+++ + +
Sbjct: 7 VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 66
Query: 258 EE 259
++
Sbjct: 67 DD 68
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 28/71 (39%)
Query: 119 PEQDIAVCRLRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHI 178
P + + ++GM C SC ++E+ I +DP L +
Sbjct: 3 PSMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTL 62
Query: 179 VEAIEDAGFGA 189
EAI+D GF A
Sbjct: 63 QEAIDDMGFDA 73
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 128 LRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHIVEAIEDAGF 187
+++ GM C +C+ +E+ ++ +DP T T I E IE G+
Sbjct: 10 MQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYDPAETGTAAIQEKIEKLGY 69
Query: 188 GADLISSGKDVNKVHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDP 245
+++ K +EG+ + A ++ L +GV+ ++ + VTV Y+P
Sbjct: 70 --HVVTE-----KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNP 120
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 6/142 (4%)
Query: 50 RTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVE 109
+ + ++ + CA+CA IE L + GV A V+ + V + P I+E +E
Sbjct: 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYDPAETGTAAIQEKIE 65
Query: 110 EAGFPVDDFPEQDIAVCRLRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFD 169
+ G+ V E+ I+GM C +C+ +E+ + ++
Sbjct: 66 KLGYHV--VTEK----AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYN 119
Query: 170 PNLTDTDHIVEAIEDAGFGADL 191
P + EA++ G+ L
Sbjct: 120 PKEASVSDLKEAVDKLGYKLKL 141
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 53 KFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAG 112
+F I + CA+CA IE L+ + GV +A V+ V++ P + +KE V++ G
Sbjct: 77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLG 136
Query: 113 FPVDDFPEQD 122
+ + EQD
Sbjct: 137 YKLKLKGEQD 146
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 128 LRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHIVEAIEDAGF 187
+++ GM C +C+ +E+ ++ +DP T T I E IE G+
Sbjct: 10 MQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGY 69
Query: 188 GADLISSGKDVNKVHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDP 245
+++ K +EG+ + A ++ L +GV+ ++ + VTV Y+P
Sbjct: 70 --HVVTE-----KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNP 120
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 8/143 (5%)
Query: 50 RTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVE 109
+ + ++ + CA+CA IE L + GV A V+ V + P I+E +E
Sbjct: 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE 65
Query: 110 EAGFP-VDDFPEQDIAVCRLRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHF 168
+ G+ V + E D I+GM C +C+ +E+ + +
Sbjct: 66 KLGYHVVTEKAEFD-------IEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEY 118
Query: 169 DPNLTDTDHIVEAIEDAGFGADL 191
+P + EA++ G+ L
Sbjct: 119 NPKEASVSDLKEAVDKLGYKLKL 141
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 53 KFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAG 112
+F I + CA+CA IE L+ + GV +A V+ V++ P + +KE V++ G
Sbjct: 77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLG 136
Query: 113 FPVDDFPEQD 122
+ + EQD
Sbjct: 137 YKLKLKGEQD 146
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 200 KVHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEE 259
++ +++ G+ + A ++ L+ GV+ ++L+ V V YDP TG +I + +E+
Sbjct: 7 EIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEK 66
>pdb|2LDI|A Chain A, Nmr Solution Structure Of Ziaan Sub Mutant
Length = 71
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 49 LRTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETV 108
L+T + ++ ++CA+CA+SIE L L GV A V+ G+ V + P ++ I+E +
Sbjct: 2 LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERI 61
Query: 109 EEAGFPVDD 117
G+ + +
Sbjct: 62 AALGYTLAE 70
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 28/45 (62%)
Query: 202 HLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPN 246
+++ G+ + A+ ++ LE +GV++ + ++ ++TV+YDP
Sbjct: 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPK 50
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 127 RLRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHIVEAIEDAG 186
++++ GM C +C+ S+ERA+E +DP I E I G
Sbjct: 6 QMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALG 65
Query: 187 F 187
+
Sbjct: 66 Y 66
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 50 RTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVE 109
+T+ ++ ++CA+CA+SIE ++ + GV+S V+ QAVV + G T + + + VE
Sbjct: 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSY-HGETTPQILTDAVE 61
Query: 110 EAGF 113
AG+
Sbjct: 62 RAGY 65
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 50 RTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVE 109
+T+ ++ ++CA+CA+SIE ++ + GV+S V+ QAVV + G T + + + VE
Sbjct: 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSY-HGETTPQILTDAVE 61
Query: 110 EAGF 113
AG+
Sbjct: 62 RAGY 65
>pdb|2K1R|A Chain A, The Solution Nmr Structure Of The Complex Between Mnk1 And
Hah1 Mediated By Cu(I)
Length = 73
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 49 LRTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETV 108
+ +V + + C SC +IE + +NGV VS E A + + P L T K ++E +
Sbjct: 3 VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 62
Query: 109 EEAGF 113
++ GF
Sbjct: 63 DDMGF 67
Score = 36.6 bits (83), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 198 VNKVHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYL 257
VN V + +EG+ + ++ + GV +++ L E T+ YDP L P+++ + +
Sbjct: 3 VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 62
Query: 258 EE 259
++
Sbjct: 63 DD 64
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 128 LRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHIVEAIEDAGF 187
+ ++GM C SC ++E+ I +DP L + EAI+D GF
Sbjct: 8 ISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 67
Query: 188 GA 189
A
Sbjct: 68 DA 69
>pdb|2L3M|A Chain A, Solution Structure Of The Putative Copper-Ion-Binding
Protein From Bacillus Anthracis Str. Ames
Length = 71
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 46 SKKLRTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIK 105
S + + ++ + C C +IES + LNGVE V EG V ++T K I
Sbjct: 1 SNAMEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIV 60
Query: 106 ETVEEAGFPV 115
+E+ G+ V
Sbjct: 61 AVIEDQGYDV 70
>pdb|1Y3K|A Chain A, Solution Structure Of The Apo Form Of The Fifth Domain Of
Menkes Protein
pdb|1Y3J|A Chain A, Solution Structure Of The Copper(I) Form Of The Fifth
Domain Of Menkes Protein
Length = 77
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 55 KIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAGF 113
++ + CASC +IE L G+ S +V+ + G+A V++ P +I I E + E GF
Sbjct: 8 QVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGF 66
Score = 37.0 bits (84), Expect = 0.061, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 126 CRLRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHIVEAIEDA 185
C +++ GM C SC ++ER + ++P + I E I +
Sbjct: 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIREL 64
Query: 186 GFGADLISS 194
GFGA +I +
Sbjct: 65 GFGATVIEN 73
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 32/68 (47%)
Query: 199 NKVHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLE 258
+K ++++ G+ + ++ L +G+ + + L K V Y+P + P I +++
Sbjct: 3 SKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIR 62
Query: 259 EASHGPNI 266
E G +
Sbjct: 63 ELGFGATV 70
>pdb|3CJK|B Chain B, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 75
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 49 LRTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETV 108
+ +V + + C SC +IE + +NGV VS E A + + P L T K ++E +
Sbjct: 1 VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 60
Query: 109 EEAGF 113
++ GF
Sbjct: 61 DDMGF 65
Score = 37.4 bits (85), Expect = 0.040, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 198 VNKVHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYL 257
VN V + +EG+ + ++ + GV +++ L E T+ YDP L P+++ + +
Sbjct: 1 VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 60
Query: 258 EE 259
++
Sbjct: 61 DD 62
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 128 LRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHIVEAIEDAGF 187
+ ++GM C SC ++E+ I +DP L + EAI+D GF
Sbjct: 6 ISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGF 65
Query: 188 GA 189
A
Sbjct: 66 DA 67
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 50 RTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVE 109
+T+ ++ + C SCA+SIE ++ + GV+S V+ QAVV + G T + + + VE
Sbjct: 2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSY-HGETTPQILTDAVE 60
Query: 110 EAGF 113
AG+
Sbjct: 61 RAGY 64
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 128 LRIKGMMCTSCSESVERAI 146
L+++GM CTSC+ S+ERAI
Sbjct: 6 LQLEGMDCTSCASSIERAI 24
>pdb|1YJR|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain A69p Mutant Of Menkes Protein
pdb|1YJT|A Chain A, Solution Structure Of The Cu(I) Form Of The Sixth Soluble
Domain A69p Mutant Of Menkes Protein
Length = 75
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 56 IREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAGF 113
+R + CASC IES L+ G+ V+ +A +K+ P +I + I T+E GF
Sbjct: 10 VRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGF 67
Score = 36.2 bits (82), Expect = 0.096, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 201 VHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEEA 260
+ L + G+ + +++ L +G+ + L+ +K + YDP + GPR II +E
Sbjct: 6 LELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESL 65
Query: 261 SHGPNI 266
P++
Sbjct: 66 GFEPSL 71
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 25/69 (36%)
Query: 124 AVCRLRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHIVEAIE 183
V L ++GM C SC +E ++ +DP + I+ IE
Sbjct: 4 GVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIE 63
Query: 184 DAGFGADLI 192
GF L+
Sbjct: 64 SLGFEPSLV 72
>pdb|1YJU|A Chain A, Solution Structure Of The Apo Form Of The Sixth Soluble
Domain Of Menkes Protein
pdb|1YJV|A Chain A, Solution Structure Of The Cu(i) Form Of The Sixth Soluble
Domain Of Menkes Protein
Length = 75
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 56 IREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAGF 113
+R + CASC IES L+ G+ V+ +A +K+ P +I + I T+E GF
Sbjct: 10 VRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGF 67
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 201 VHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLE 258
+ L + G+ + +++ L +G+ + L+ +K + YDP + GPR II +E
Sbjct: 6 LELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIE 63
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 26/69 (37%)
Query: 124 AVCRLRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHIVEAIE 183
V L ++GM C SC +E ++ +DP + I+ IE
Sbjct: 4 GVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIE 63
Query: 184 DAGFGADLI 192
GF A L+
Sbjct: 64 SLGFEASLV 72
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 46 SKKLRTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIK 105
S L+T + ++ + C SC IE L L GV A V+ G+ V + P ++ I+
Sbjct: 4 SSPLKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQ 63
Query: 106 ETVEEAGF 113
E + G+
Sbjct: 64 ERIAALGY 71
>pdb|1AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
pdb|2AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
Length = 72
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 27/64 (42%)
Query: 128 LRIKGMMCTSCSESVERAIEMXXXXXXXXXXXXXXXXXXHFDPNLTDTDHIVEAIEDAGF 187
+ I GM C SC +S+E I +DP LT + + AIED GF
Sbjct: 7 INIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGF 66
Query: 188 GADL 191
A L
Sbjct: 67 DATL 70
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 54 FKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAGF 113
I + C SC SIE V+S GV+S VS V++ P L + + ++ +E+ GF
Sbjct: 7 INIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGF 66
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 203 LKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEE 259
+ ++G+ + ++ + GV + + L+ TV YDP LT P ++ +E+
Sbjct: 7 INIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIED 63
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A Potential
Copper-Translocating P-Type Atpase From Bacillus
Subtilis In The Cu(I)loaded State
Length = 80
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 53 KFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAG 112
+F I + CA+CA IE L+ + GV +A V+ V++ P + +KE V++ G
Sbjct: 6 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLG 65
Query: 113 FPVDDFPEQD 122
+ + EQD
Sbjct: 66 YKLKLKGEQD 75
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 49 LRTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETV 108
L+T + ++ + C SC IE L L GV A V+ G+ V + P ++ I+E +
Sbjct: 2 LKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERI 61
Query: 109 EEAGF 113
G+
Sbjct: 62 AALGY 66
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 53 KFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAG 112
+F I + CA+CA IE L+ + GV +A V+ V++ P + +KE V++ G
Sbjct: 6 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLG 65
Query: 113 FPVDDFPEQD 122
+ + EQD
Sbjct: 66 YKLKLKGEQD 75
>pdb|2G9O|A Chain A, Solution Structure Of The Apo Form Of The Third Metal-
Binding Domain Of Atp7a Protein (Menkes Disease Protein)
pdb|2GA7|A Chain A, Solution Structure Of The Copper(I) Form Of The Third
Metal- Binding Domain Of Atp7a Protein (Menkes Disease
Protein)
Length = 90
Score = 37.4 bits (85), Expect = 0.044, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 51 TVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVE 109
T F I + C SC ++IES LS L V S VVS A+V + +T + +++ +E
Sbjct: 4 TATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIE 62
>pdb|2KT2|A Chain A, Structure Of Nmera, The N-Terminal Hma Domain Of Tn501
Mercuric Reductase
pdb|2KT3|A Chain A, Structure Of Hg-Nmera, Hg(Ii) Complex Of The N-Terminal
Domain Of Tn501 Mercuric Reductase
Length = 69
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 54 FKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPG 97
KI + C SCA ++ L + GV+SA+VS +G A + +PG
Sbjct: 4 LKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPG 47
>pdb|2GGP|B Chain B, Solution Structure Of The Atx1-Cu(I)-Ccc2a Complex
pdb|1FVQ|A Chain A, Solution Structure Of The Yeast Copper Transporter Domain
Ccc2a In The Apo And Cu(I) Loaded States
Length = 72
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 50 RTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVE 109
R V + + C++C +I + L L GV +S + + V + +TA IKE +E
Sbjct: 2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTY-DNEVTADSIKEIIE 60
Query: 110 EAGF 113
+ GF
Sbjct: 61 DCGF 64
>pdb|1FVS|A Chain A, Solution Structure Of The Yeast Copper Transporter Domain
Ccc2a In The Apo And Cu(I) Load States
Length = 72
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 50 RTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVE 109
R V + + C++C +I + L L GV +S + + V + +TA IKE +E
Sbjct: 2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTY-DNEVTADSIKEIIE 60
Query: 110 EAGF 113
+ GF
Sbjct: 61 DCGF 64
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 34/65 (52%)
Query: 50 RTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVE 109
+TV + + C++C +++ +S + GV V+ QAVV F + +++ +
Sbjct: 3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATA 62
Query: 110 EAGFP 114
+AG+P
Sbjct: 63 DAGYP 67
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 50 RTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVE 109
+TV + + CA+C +++ LS + GV V + +AVV F + +++ +
Sbjct: 3 QTVTLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFDDTKASVQKLTKATA 62
Query: 110 EAGFP 114
+AG+P
Sbjct: 63 DAGYP 67
>pdb|1Z90|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|1Z90|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
Length = 469
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 112/294 (38%), Gaps = 50/294 (17%)
Query: 561 PMVVAAAFITW--------LGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPC 612
P VVA F+ W GW+ PG ++P +D F L G + VA
Sbjct: 166 PRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTF---LSQGKEYVFVANSD 222
Query: 613 ALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTV--GKPEVVSAV 670
LG + L LI+ N KT+ K GTL GK +++
Sbjct: 223 NLGAIVDLTI---------LKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIA 273
Query: 671 LFSHFSMEEFCDMATAAEANSEH-----PIAKAVVEHAKKLRQKLGSPTEHASEAKDFEV 725
+ EF + N+ + K +VE A L+ ++ + K ++
Sbjct: 274 QVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVE-ADALKMEIIPNPKEVDGVKVLQL 332
Query: 726 HTGAGVSGKVGDRTVLVGNKRLMMAFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGA 785
T AG + + D + V R + +PV D +++++ + +DG V
Sbjct: 333 ETAAGAAIRFFDNAIGVNVPR---SRFLPVKASSDLLLVQSD------LYTLVDGFVTRN 383
Query: 786 FAVTDPVKPEAQI---------VVSSLRSM----EISSIMVTGDNWATANAIAK 826
A T+P P ++ +S +S+ E+ S+ V+GD W ++ + K
Sbjct: 384 KARTNPSNPSIELGPEFKKVATFLSRFKSIPSIVELDSLKVSGDVWFGSSIVLK 437
>pdb|2ICX|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICX|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICY|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
pdb|2ICY|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
Length = 469
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 112/294 (38%), Gaps = 50/294 (17%)
Query: 561 PMVVAAAFITW--------LGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPC 612
P VVA F+ W GW+ PG ++P +D F L G + VA
Sbjct: 166 PRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTF---LSQGKEYVFVANSD 222
Query: 613 ALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTV--GKPEVVSAV 670
LG + L LI+ N KT+ K GTL GK +++
Sbjct: 223 NLGAIVDLTI---------LKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIA 273
Query: 671 LFSHFSMEEFCDMATAAEANSEH-----PIAKAVVEHAKKLRQKLGSPTEHASEAKDFEV 725
+ EF + N+ + K +VE A L+ ++ + K ++
Sbjct: 274 QVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVE-ADALKMEIIPNPKEVDGVKVLQL 332
Query: 726 HTGAGVSGKVGDRTVLVGNKRLMMAFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGA 785
T AG + + D + V R + +PV D +++++ + +DG V
Sbjct: 333 ETAAGAAIRFFDNAIGVNVPR---SRFLPVKASSDLLLVQSD------LYTLVDGFVTRN 383
Query: 786 FAVTDPVKPEAQI---------VVSSLRSM----EISSIMVTGDNWATANAIAK 826
A T+P P ++ +S +S+ E+ S+ V+GD W ++ + K
Sbjct: 384 KARTNPSNPSIELGPEFKKVATFLSRFKSIPSIVELDSLKVSGDVWFGSSIVLK 437
>pdb|1OPZ|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ3|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ6|A Chain A, Solution Structure Of Copper-s46v Copa From Bacillus
Subtilis
Length = 76
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%)
Query: 200 KVHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEE 259
++ +++ G+ + A ++ L+ GV+ ++L+ V V YDP TG +I + +E+
Sbjct: 7 EIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEK 66
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 50 RTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVE 109
+ + ++ + CA+CA IE L + GV A V+ V + P I+E +E
Sbjct: 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE 65
Query: 110 EAGFPV 115
+ G+ V
Sbjct: 66 KLGYHV 71
>pdb|1CPZ|A Chain A, Copper Chaperone Of Enterococcus Hirae (Apo-Form)
Length = 68
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 53 KFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAG 112
+F ++ + C C IE + ++GV+ V + +AVVKF + A I + + E G
Sbjct: 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELG 62
Query: 113 FPVD 116
+ +
Sbjct: 63 YQAE 66
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 52 VKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEA 111
+K K+ + C C ++ L + GVE VS +G+A+V+ G K + + VEE
Sbjct: 2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVE---GTADPKALVQAVEEE 58
Query: 112 GFPVD 116
G+ +
Sbjct: 59 GYKAE 63
>pdb|2F6U|A Chain A, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Citrate
pdb|2F6U|B Chain B, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Citrate
pdb|2F6X|A Chain A, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Sn-G1p And Mpd
pdb|2F6X|B Chain B, Crystal Structure Of (S)-3-O-Geranylgeranylglyceryl
Phosphate Synthase Complexed With Sn-G1p And Mpd
Length = 234
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 168 FDPNLTDTDHIVEAIEDAGFGADLISSGKDV 198
DP+ T+TD I++A+ D+G A +IS ++V
Sbjct: 15 LDPDRTNTDEIIKAVADSGTDAVMISGTQNV 45
>pdb|3MN1|A Chain A, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|B Chain B, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|C Chain C, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|D Chain D, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|E Chain E, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|F Chain F, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|G Chain G, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|H Chain H, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|I Chain I, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|J Chain J, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|K Chain K, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3MN1|L Chain L, Crystal Structure Of Probable Yrbi Family Phosphatase From
P Syringae Pv.Phaseolica 1448a
pdb|3NRJ|A Chain A, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|B Chain B, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|C Chain C, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|D Chain D, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|E Chain E, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|F Chain F, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|G Chain G, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|H Chain H, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|I Chain I, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|J Chain J, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|K Chain K, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
pdb|3NRJ|L Chain L, Crystal Structure Of Probable Yrbi Family Phosphatase From
Pseudomonas Syringae Pv.Phaseolica 1448a Complexed With
Magnesium
Length = 189
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 808 ISSIMVTGDNWATANAIAKEVGIGKVF-AETDPVGKANKI-KELQLKGMTVAMVGDGIND 865
+++ +++G A AK +GI +F D + +K+ ELQL VA +GD + D
Sbjct: 63 VTTAIISGRKTAIVERRAKSLGIEHLFQGREDKLVVLDKLLAELQLGYEQVAYLGDDLPD 122
Query: 866 SPALVAADVGMAI 878
P + +GMA+
Sbjct: 123 LPVIRRVGLGMAV 135
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 838 DPVGKANKIKEL-QLKGMTVAM---VGDGINDSPALVAADVGMAIGAGTDVAIEAADIVL 893
D GKA ++E Q G+ +A VGDG ND L AA +G+A A + E AD L
Sbjct: 320 DRAGKATALREFAQRAGVPMAQTVAVGDGANDIDMLAAAGLGIAFNAKPALR-EVADASL 378
Query: 894 IKSSLEDVVTAIDLSRKTI 912
L+ V+ + ++R I
Sbjct: 379 SHPYLDTVLFLLGVTRGEI 397
>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment
Length = 403
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 679 EFCDMATAAEANSEHPIAKAV 699
++CD+ TAA +N HP++ A+
Sbjct: 67 QYCDICTAANSNKAHPVSNAI 87
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 853 GMT---VAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAID 906
GMT V +GDG ND + A +G+A+G + +AAD + + + + V AI+
Sbjct: 210 GMTREEVIAIGDGYNDLSMIKFAGMGVAMGNAQEPVKKAADYITLTNDEDGVAEAIE 266
>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
Length = 201
Score = 30.0 bits (66), Expect = 7.1, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 20/112 (17%)
Query: 792 VKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQL 851
V PEA+ +V +LR ++++G + +G F + + K + ++L
Sbjct: 80 VSPEARELVETLREKGFKVVLISGSFEEVLEPFKE---LGDEFMANRAIFEDGKFQGIRL 136
Query: 852 K-------------GMTVAMVGDGINDSPALVAADVGMAIG---AGTDVAIE 887
+ G +AM GDG D+ AD+G+A+G G D+ ++
Sbjct: 137 RFRDKGEFLKRFRDGFILAM-GDGYADAKMFERADMGIAVGREIPGADLLVK 187
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 850 QLKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIV 892
++K + GDG ND P L AA +G+A+G ++ AD V
Sbjct: 207 RVKVSEIMACGDGGNDIPMLKAAGIGVAMGNASEKVQSVADFV 249
>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH3|B Chain B, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH5|A Chain A, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
pdb|1QH5|B Chain B, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
Length = 260
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 22/117 (18%)
Query: 787 AVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG---KVFAETDPVG-- 841
A+ DPV+P+ + + +++++++ T +W A K V + KV+ D +G
Sbjct: 26 AIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVYGGDDRIGAL 85
Query: 842 --KANKIKELQLKGMTVAMVGD---------------GINDSPALVAADVGMAIGAG 881
K + LQ+ + V + G ++ PA+ D G G
Sbjct: 86 THKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCG 142
>pdb|4EP1|A Chain A, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Bacillus Anthracis
pdb|4EP1|B Chain B, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Bacillus Anthracis
Length = 340
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 805 SMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQ--------LKGMTV 856
S I IM+ + A +AKE I + TD + +L KG+ +
Sbjct: 123 SHYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKL 182
Query: 857 AMVGDGIN--DSPALVAADVGMAIGAGTDVAIEAADIVLIKS 896
A VGDG N S L +A VGM + T V + ++ K+
Sbjct: 183 AYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKA 224
>pdb|1P8G|A Chain A, The Solution Structure Of Apo Copz From Bacillus Subtilis
pdb|1K0V|A Chain A, Copper Trafficking: The Solution Structure Of Bacillus
Subtilis Copz
Length = 73
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 203 LKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEEASH 262
L++EG++ V+ + GVS V ++L KV VS+D + + I +E+ +
Sbjct: 6 LQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGY 65
>pdb|2QIF|A Chain A, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|2QIF|B Chain B, Crystal Structure Of A Metallochaperone With A
Tetranuclear Cu(I) Cluster
pdb|3I9Z|A Chain A, Crystal Structure Of A Metallochaperone With A Trinuclear
Cu(I) Cluster
Length = 69
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 203 LKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEE 259
L++EG++ V+ + GVS V ++L KV VS+D + + I +E+
Sbjct: 6 LQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIED 62
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 29.3 bits (64), Expect = 9.9, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 856 VAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAID 906
V +GDG ND + A G+A G + +AAD + + + + V AI+
Sbjct: 216 VIAIGDGYNDLSXIKFAGXGVAXGNAQEPVKKAADYITLTNDEDGVAEAIE 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,202,165
Number of Sequences: 62578
Number of extensions: 1095736
Number of successful extensions: 3260
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3030
Number of HSP's gapped (non-prelim): 174
length of query: 986
length of database: 14,973,337
effective HSP length: 108
effective length of query: 878
effective length of database: 8,214,913
effective search space: 7212693614
effective search space used: 7212693614
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)