Query 001981
Match_columns 986
No_of_seqs 576 out of 4132
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 13:48:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0207 Cation transport ATPas 100.0 2E-160 3E-165 1361.5 79.4 899 57-976 1-907 (951)
2 COG2217 ZntA Cation transport 100.0 4E-140 8E-145 1230.0 79.9 707 200-971 3-710 (713)
3 PRK10671 copA copper exporting 100.0 4E-125 9E-130 1166.1 91.1 801 125-974 4-833 (834)
4 PRK11033 zntA zinc/cadmium/mer 100.0 2E-112 5E-117 1030.3 80.1 688 198-972 52-740 (741)
5 TIGR01511 ATPase-IB1_Cu copper 100.0 1E-101 3E-106 912.9 69.5 562 346-950 1-562 (562)
6 TIGR01525 ATPase-IB_hvy heavy 100.0 1.2E-92 2.6E-97 840.2 68.3 549 365-968 1-556 (556)
7 TIGR01512 ATPase-IB2_Cd heavy 100.0 5.2E-93 1.1E-97 837.4 64.4 533 365-969 1-535 (536)
8 TIGR01647 ATPase-IIIA_H plasma 100.0 2E-87 4.2E-92 815.7 63.2 527 398-949 55-629 (755)
9 PRK01122 potassium-transportin 100.0 3.9E-85 8.5E-90 767.7 65.3 517 401-942 68-600 (679)
10 PRK14010 potassium-transportin 100.0 6.3E-85 1.4E-89 765.3 63.0 496 407-928 74-578 (673)
11 TIGR01497 kdpB K+-transporting 100.0 1.7E-82 3.8E-87 743.3 64.9 520 397-940 63-599 (675)
12 PRK10517 magnesium-transportin 100.0 5E-83 1.1E-87 785.2 61.5 513 398-932 122-716 (902)
13 TIGR01524 ATPase-IIIB_Mg magne 100.0 1.2E-82 2.7E-87 783.1 64.6 509 401-931 90-680 (867)
14 PRK15122 magnesium-transportin 100.0 5.9E-82 1.3E-86 777.3 62.6 507 397-930 110-714 (903)
15 TIGR01517 ATPase-IIB_Ca plasma 100.0 4.7E-79 1E-83 761.0 64.1 563 397-971 127-784 (941)
16 TIGR01522 ATPase-IIA2_Ca golgi 100.0 3.9E-79 8.6E-84 757.2 61.3 534 414-972 95-734 (884)
17 TIGR01494 ATPase_P-type ATPase 100.0 6.6E-77 1.4E-81 699.8 52.0 476 406-935 3-483 (499)
18 TIGR01106 ATPase-IIC_X-K sodiu 100.0 1.3E-74 2.8E-79 722.7 65.4 550 398-971 103-799 (997)
19 KOG0202 Ca2+ transporting ATPa 100.0 1.8E-75 3.9E-80 656.5 46.2 521 399-932 78-757 (972)
20 TIGR01116 ATPase-IIA1_Ca sarco 100.0 1.5E-73 3.3E-78 708.7 63.4 559 397-971 35-745 (917)
21 TIGR01523 ATPase-IID_K-Na pota 100.0 2E-73 4.3E-78 708.8 63.0 548 401-971 83-866 (1053)
22 COG0474 MgtA Cation transport 100.0 2E-74 4.3E-79 711.6 48.3 544 402-972 110-756 (917)
23 KOG0204 Calcium transporting A 100.0 1E-72 2.3E-77 633.0 43.4 573 395-982 179-865 (1034)
24 TIGR01657 P-ATPase-V P-type AT 100.0 1.7E-71 3.8E-76 699.2 57.4 560 397-985 191-927 (1054)
25 COG2216 KdpB High-affinity K+ 100.0 1.6E-64 3.5E-69 538.4 40.9 521 367-912 36-568 (681)
26 KOG0203 Na+/K+ ATPase, alpha s 100.0 6.1E-64 1.3E-68 561.8 17.8 512 401-932 128-785 (1019)
27 KOG0205 Plasma membrane H+-tra 100.0 1.7E-61 3.8E-66 525.8 31.6 513 392-928 91-659 (942)
28 KOG0208 Cation transport ATPas 100.0 3.5E-59 7.6E-64 531.6 43.9 514 396-932 211-929 (1140)
29 TIGR01652 ATPase-Plipid phosph 100.0 2.2E-58 4.8E-63 582.6 49.3 553 395-968 50-883 (1057)
30 PLN03190 aminophospholipid tra 100.0 1.1E-51 2.3E-56 515.1 57.0 548 396-965 137-987 (1178)
31 KOG0209 P-type ATPase [Inorgan 100.0 2.4E-49 5.2E-54 441.0 29.4 465 397-881 215-834 (1160)
32 KOG0210 P-type ATPase [Inorgan 100.0 1.5E-44 3.3E-49 395.5 29.0 494 396-921 129-849 (1051)
33 KOG0206 P-type ATPase [General 100.0 5.4E-38 1.2E-42 377.9 29.1 517 398-932 83-873 (1151)
34 PF00122 E1-E2_ATPase: E1-E2 A 100.0 1.6E-34 3.6E-39 306.4 21.4 223 404-644 1-230 (230)
35 PF00702 Hydrolase: haloacid d 100.0 8.2E-28 1.8E-32 252.7 14.9 209 648-873 1-215 (215)
36 KOG0207 Cation transport ATPas 99.6 2.4E-15 5.2E-20 174.3 15.3 171 4-192 40-214 (951)
37 COG4087 Soluble P-type ATPase 99.6 5.7E-15 1.2E-19 131.3 12.7 124 777-903 16-144 (152)
38 COG1778 Low specificity phosph 99.3 8E-12 1.7E-16 115.9 9.4 114 799-914 43-164 (170)
39 PF00403 HMA: Heavy-metal-asso 99.2 3.5E-11 7.6E-16 98.6 8.5 61 202-262 1-61 (62)
40 TIGR02726 phenyl_P_delta pheny 99.2 6.5E-11 1.4E-15 117.2 10.9 102 798-899 41-144 (169)
41 TIGR02137 HSK-PSP phosphoserin 99.2 2E-10 4.3E-15 118.1 11.8 116 791-908 68-198 (203)
42 PRK11133 serB phosphoserine ph 99.2 2.7E-10 5.8E-15 125.1 13.3 115 791-906 181-316 (322)
43 PF00403 HMA: Heavy-metal-asso 99.1 1.6E-10 3.6E-15 94.6 8.6 62 127-188 1-62 (62)
44 TIGR01670 YrbI-phosphatas 3-de 99.1 6.6E-10 1.4E-14 109.3 12.7 104 799-904 36-144 (154)
45 PRK10513 sugar phosphate phosp 99.1 7.8E-10 1.7E-14 120.4 13.4 132 772-906 4-265 (270)
46 PRK01158 phosphoglycolate phos 99.1 1.2E-09 2.6E-14 115.9 13.4 131 772-906 4-226 (230)
47 PRK10671 copA copper exporting 99.1 1.6E-09 3.5E-14 135.7 16.4 134 50-191 3-163 (834)
48 TIGR01487 SPP-like sucrose-pho 99.0 9.8E-10 2.1E-14 115.2 11.6 130 773-905 3-215 (215)
49 PRK15126 thiamin pyrimidine py 99.0 1.2E-09 2.7E-14 118.9 12.4 132 772-906 3-259 (272)
50 PRK10976 putative hydrolase; P 99.0 1.7E-09 3.7E-14 117.5 13.4 132 772-906 3-261 (266)
51 COG0561 Cof Predicted hydrolas 99.0 1.4E-09 3E-14 118.0 12.5 133 772-907 4-259 (264)
52 COG2608 CopZ Copper chaperone 99.0 1.4E-09 2.9E-14 91.0 8.9 68 49-116 1-68 (71)
53 COG2608 CopZ Copper chaperone 99.0 1.7E-09 3.6E-14 90.5 8.7 66 125-190 3-68 (71)
54 TIGR01482 SPP-subfamily Sucros 98.9 4.7E-09 1E-13 110.9 11.9 127 777-906 4-222 (225)
55 PRK09484 3-deoxy-D-manno-octul 98.9 7.8E-09 1.7E-13 104.9 12.9 138 770-909 20-172 (183)
56 TIGR00338 serB phosphoserine p 98.9 5E-09 1.1E-13 110.3 11.6 113 791-904 85-218 (219)
57 PRK10530 pyridoxal phosphate ( 98.9 1.4E-08 3E-13 110.8 14.9 53 854-906 216-268 (272)
58 COG0546 Gph Predicted phosphat 98.9 1.1E-08 2.3E-13 107.5 13.0 116 789-906 87-218 (220)
59 PLN02887 hydrolase family prot 98.9 1E-08 2.3E-13 120.4 13.1 53 854-906 524-576 (580)
60 PF08282 Hydrolase_3: haloacid 98.9 6.5E-09 1.4E-13 111.7 10.7 117 789-905 13-254 (254)
61 COG0560 SerB Phosphoserine pho 98.8 9.6E-09 2.1E-13 106.1 9.7 103 790-893 76-199 (212)
62 TIGR00099 Cof-subfamily Cof su 98.8 3.8E-08 8.2E-13 106.2 11.6 127 775-904 3-255 (256)
63 PRK13582 thrH phosphoserine ph 98.8 4.8E-08 1E-12 101.6 11.9 114 791-906 68-196 (205)
64 PRK13222 phosphoglycolate phos 98.7 1.5E-07 3.2E-12 99.6 12.0 117 790-908 92-224 (226)
65 PRK03669 mannosyl-3-phosphogly 98.6 3.5E-07 7.6E-12 99.4 13.3 58 770-830 6-63 (271)
66 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.6 2.4E-07 5.2E-12 96.0 11.2 100 791-890 80-200 (201)
67 KOG1615 Phosphoserine phosphat 98.6 8.9E-08 1.9E-12 92.2 6.5 90 790-879 87-199 (227)
68 PRK00192 mannosyl-3-phosphogly 98.6 6.2E-07 1.4E-11 97.6 13.3 57 772-831 5-61 (273)
69 PLN02954 phosphoserine phospha 98.5 9.6E-07 2.1E-11 93.2 13.5 112 791-904 84-222 (224)
70 TIGR01486 HAD-SF-IIB-MPGP mann 98.5 1E-06 2.2E-11 95.0 12.3 53 854-906 195-253 (256)
71 TIGR01454 AHBA_synth_RP 3-amin 98.4 1.5E-06 3.3E-11 90.3 11.1 114 790-905 74-203 (205)
72 TIGR02471 sucr_syn_bact_C sucr 98.4 1.8E-06 3.9E-11 91.9 10.6 66 841-906 159-232 (236)
73 TIGR03333 salvage_mtnX 2-hydro 98.3 3.9E-06 8.6E-11 87.7 12.1 117 790-906 69-209 (214)
74 PRK09552 mtnX 2-hydroxy-3-keto 98.3 2.8E-06 6.1E-11 89.2 10.9 112 791-905 74-212 (219)
75 TIGR01489 DKMTPPase-SF 2,3-dik 98.3 2.2E-06 4.7E-11 87.7 9.1 88 790-877 71-186 (188)
76 PRK13288 pyrophosphatase PpaX; 98.3 4E-06 8.6E-11 87.8 11.0 113 791-905 82-210 (214)
77 TIGR01488 HAD-SF-IB Haloacid D 98.2 2.3E-06 5E-11 86.6 7.8 81 792-872 74-177 (177)
78 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.2 4.5E-06 9.9E-11 86.5 9.8 92 789-880 85-198 (202)
79 TIGR01485 SPP_plant-cyano sucr 98.2 8.2E-06 1.8E-10 87.5 11.7 133 774-906 4-244 (249)
80 PF12710 HAD: haloacid dehalog 98.2 6E-06 1.3E-10 84.8 9.4 77 794-870 92-192 (192)
81 PRK06769 hypothetical protein; 98.2 6.2E-06 1.4E-10 82.9 8.9 106 770-875 3-132 (173)
82 PRK13225 phosphoglycolate phos 98.2 1.8E-05 3.8E-10 85.6 12.7 113 791-905 142-267 (273)
83 TIGR01449 PGP_bact 2-phosphogl 98.1 7.3E-06 1.6E-10 85.7 9.2 111 791-903 85-211 (213)
84 PRK10187 trehalose-6-phosphate 98.1 1.5E-05 3.2E-10 86.0 11.6 131 771-907 14-242 (266)
85 PRK13223 phosphoglycolate phos 98.1 1.4E-05 3E-10 86.8 11.1 115 790-906 100-230 (272)
86 PRK13226 phosphoglycolate phos 98.1 2.2E-05 4.8E-10 83.0 10.9 113 791-905 95-224 (229)
87 TIGR01422 phosphonatase phosph 98.0 2.1E-05 4.6E-10 84.7 10.0 90 791-880 99-204 (253)
88 PLN02382 probable sucrose-phos 98.0 3.5E-05 7.6E-10 88.2 11.9 131 773-906 11-257 (413)
89 PRK08238 hypothetical protein; 98.0 6.6E-05 1.4E-09 87.2 13.7 92 791-883 72-169 (479)
90 PLN02770 haloacid dehalogenase 98.0 3.8E-05 8.3E-10 82.2 10.7 108 791-900 108-230 (248)
91 PRK10826 2-deoxyglucose-6-phos 98.0 2.6E-05 5.6E-10 82.2 9.0 111 790-902 91-216 (222)
92 PLN03243 haloacid dehalogenase 97.9 6.2E-05 1.3E-09 80.8 10.6 110 791-902 109-231 (260)
93 PRK13478 phosphonoacetaldehyde 97.9 6.8E-05 1.5E-09 81.4 10.6 114 791-906 101-255 (267)
94 cd01427 HAD_like Haloacid deha 97.9 5.4E-05 1.2E-09 72.4 8.7 85 789-873 22-133 (139)
95 COG2217 ZntA Cation transport 97.9 2.8E-05 6E-10 93.5 7.9 66 125-191 3-69 (713)
96 PRK06698 bifunctional 5'-methy 97.8 7.1E-05 1.5E-09 87.8 10.9 117 791-909 330-457 (459)
97 TIGR03351 PhnX-like phosphonat 97.8 9.5E-05 2.1E-09 77.7 9.7 114 790-905 86-219 (220)
98 TIGR01672 AphA HAD superfamily 97.7 0.00013 2.9E-09 76.5 9.3 88 791-879 114-213 (237)
99 PLN02575 haloacid dehalogenase 97.7 0.00019 4.1E-09 80.2 11.0 109 791-901 216-337 (381)
100 COG2179 Predicted hydrolase of 97.7 0.00025 5.4E-09 67.7 9.8 109 764-874 21-132 (175)
101 TIGR01544 HAD-SF-IE haloacid d 97.7 0.00042 9.1E-09 73.8 12.7 116 790-905 120-273 (277)
102 PRK12702 mannosyl-3-phosphogly 97.7 0.00041 8.9E-09 73.7 12.2 56 772-830 2-57 (302)
103 TIGR02461 osmo_MPG_phos mannos 97.6 0.00043 9.2E-09 72.8 11.5 52 775-830 3-54 (225)
104 TIGR01662 HAD-SF-IIIA HAD-supe 97.6 0.00036 7.8E-09 66.8 10.1 103 773-875 2-126 (132)
105 TIGR01668 YqeG_hyp_ppase HAD s 97.6 0.00033 7.2E-09 70.2 10.1 107 767-875 21-131 (170)
106 PRK14988 GMP/IMP nucleotidase; 97.6 0.00014 2.9E-09 76.6 7.5 92 790-881 92-196 (224)
107 PRK14501 putative bifunctional 97.6 0.00054 1.2E-08 85.0 13.8 142 759-906 480-721 (726)
108 TIGR02253 CTE7 HAD superfamily 97.6 0.00019 4.1E-09 75.5 8.4 89 791-879 94-195 (221)
109 PRK14502 bifunctional mannosyl 97.6 0.0003 6.6E-09 82.9 10.6 57 771-830 416-472 (694)
110 TIGR01548 HAD-SF-IA-hyp1 haloa 97.6 0.00019 4E-09 74.1 7.6 84 789-872 104-197 (197)
111 PRK11009 aphA acid phosphatase 97.6 0.00028 6.2E-09 73.9 9.0 81 791-875 114-206 (237)
112 PTZ00174 phosphomannomutase; P 97.6 0.00046 1E-08 73.9 10.9 54 771-827 5-58 (247)
113 TIGR01484 HAD-SF-IIB HAD-super 97.5 0.00042 9.1E-09 71.9 9.8 54 774-830 2-56 (204)
114 PRK11590 hypothetical protein; 97.5 0.00062 1.4E-08 70.9 11.0 91 791-881 95-204 (211)
115 PRK08942 D,D-heptose 1,7-bisph 97.5 0.00067 1.4E-08 68.9 10.9 114 791-906 29-177 (181)
116 TIGR01545 YfhB_g-proteo haloac 97.5 0.00067 1.5E-08 70.4 10.2 90 791-880 94-202 (210)
117 TIGR00003 copper ion binding p 97.4 0.00065 1.4E-08 54.8 7.9 63 201-263 4-66 (68)
118 PRK11587 putative phosphatase; 97.4 0.00075 1.6E-08 70.8 10.1 103 791-893 83-197 (218)
119 PLN02779 haloacid dehalogenase 97.4 0.0004 8.6E-09 75.9 8.3 109 791-901 144-268 (286)
120 TIGR01428 HAD_type_II 2-haloal 97.4 0.0005 1.1E-08 70.9 8.5 85 791-875 92-187 (198)
121 PLN02940 riboflavin kinase 97.4 0.00033 7.2E-09 79.7 7.7 103 791-893 93-210 (382)
122 TIGR02254 YjjG/YfnB HAD superf 97.4 0.00042 9E-09 73.0 7.8 111 791-904 97-223 (224)
123 PRK09449 dUMP phosphatase; Pro 97.4 0.00056 1.2E-08 72.1 8.5 112 791-905 95-222 (224)
124 PHA02530 pseT polynucleotide k 97.3 0.0005 1.1E-08 76.1 8.2 88 788-875 184-291 (300)
125 COG4030 Uncharacterized protei 97.3 0.00055 1.2E-08 68.0 7.2 116 791-907 83-263 (315)
126 TIGR01685 MDP-1 magnesium-depe 97.3 0.00073 1.6E-08 67.4 8.0 93 786-878 40-155 (174)
127 PRK11033 zntA zinc/cadmium/mer 97.3 0.087 1.9E-06 65.5 27.7 65 124-190 53-117 (741)
128 TIGR00213 GmhB_yaeD D,D-heptos 97.3 0.0011 2.4E-08 66.9 9.1 129 772-902 2-175 (176)
129 TIGR01990 bPGM beta-phosphoglu 97.2 0.00049 1.1E-08 70.0 6.2 83 791-875 87-180 (185)
130 TIGR00003 copper ion binding p 97.2 0.0022 4.8E-08 51.5 8.9 66 50-115 2-67 (68)
131 KOG4656 Copper chaperone for s 97.2 0.0014 3E-08 64.0 8.0 63 49-115 6-68 (247)
132 PLN02580 trehalose-phosphatase 97.2 0.0042 9.1E-08 69.4 13.0 138 764-906 112-374 (384)
133 KOG4656 Copper chaperone for s 97.2 0.0012 2.6E-08 64.3 7.4 63 124-190 7-69 (247)
134 TIGR02009 PGMB-YQAB-SF beta-ph 97.1 0.00072 1.6E-08 68.8 5.7 84 790-875 87-181 (185)
135 TIGR01664 DNA-3'-Pase DNA 3'-p 97.1 0.0034 7.3E-08 62.5 10.3 105 772-876 14-158 (166)
136 TIGR01509 HAD-SF-IA-v3 haloaci 97.1 0.0014 3E-08 66.5 7.5 84 791-875 85-179 (183)
137 TIGR01656 Histidinol-ppas hist 97.1 0.0018 3.8E-08 63.3 7.8 85 791-875 27-140 (147)
138 PF13419 HAD_2: Haloacid dehal 97.1 0.00061 1.3E-08 68.3 4.8 87 789-875 75-172 (176)
139 COG4359 Uncharacterized conser 97.0 0.0023 4.9E-08 61.8 7.6 88 791-878 73-184 (220)
140 PLN02811 hydrolase 97.0 0.0022 4.8E-08 67.3 8.4 86 790-875 77-179 (220)
141 TIGR02252 DREG-2 REG-2-like, H 96.9 0.0016 3.4E-08 67.5 6.8 84 791-875 105-200 (203)
142 TIGR01681 HAD-SF-IIIC HAD-supe 96.9 0.0026 5.6E-08 60.4 7.2 81 791-871 29-126 (128)
143 TIGR00685 T6PP trehalose-phosp 96.9 0.0043 9.4E-08 66.2 9.4 62 841-906 167-240 (244)
144 PF05116 S6PP: Sucrose-6F-phos 96.8 0.0038 8.2E-08 66.6 8.3 67 840-906 164-243 (247)
145 PLN02957 copper, zinc superoxi 96.8 0.0036 7.9E-08 66.1 8.0 62 199-264 6-67 (238)
146 TIGR01686 FkbH FkbH-like domai 96.8 0.0043 9.2E-08 69.1 9.0 107 772-878 4-128 (320)
147 TIGR01691 enolase-ppase 2,3-di 96.7 0.0071 1.5E-07 63.0 9.6 89 788-876 92-192 (220)
148 TIGR01261 hisB_Nterm histidino 96.7 0.0038 8.3E-08 61.7 7.2 85 791-875 29-142 (161)
149 PLN02957 copper, zinc superoxi 96.7 0.0062 1.3E-07 64.3 9.0 67 124-194 6-72 (238)
150 PLN03017 trehalose-phosphatase 96.7 0.024 5.1E-07 62.9 13.8 59 767-826 107-167 (366)
151 PRK05446 imidazole glycerol-ph 96.7 0.0069 1.5E-07 67.4 9.6 104 772-875 3-143 (354)
152 TIGR01549 HAD-SF-IA-v1 haloaci 96.7 0.0038 8.3E-08 61.4 6.8 81 791-873 64-154 (154)
153 PLN02205 alpha,alpha-trehalose 96.6 0.016 3.6E-07 72.2 13.5 69 759-827 584-653 (854)
154 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.6 0.014 3E-07 62.2 11.0 100 771-874 8-116 (242)
155 TIGR02463 MPGP_rel mannosyl-3- 96.4 0.0072 1.6E-07 63.5 7.2 61 818-878 150-220 (221)
156 KOG4383 Uncharacterized conser 96.4 0.032 6.9E-07 63.9 12.3 147 780-926 815-1097(1354)
157 smart00577 CPDc catalytic doma 96.4 0.0037 8.1E-08 61.0 4.5 86 791-877 45-139 (148)
158 PLN02919 haloacid dehalogenase 96.3 0.011 2.3E-07 76.0 9.3 109 791-901 161-285 (1057)
159 smart00775 LNS2 LNS2 domain. T 96.2 0.028 6E-07 55.4 9.7 87 789-875 25-141 (157)
160 PF06888 Put_Phosphatase: Puta 96.2 0.014 3E-07 61.0 7.9 78 791-868 71-184 (234)
161 COG3769 Predicted hydrolase (H 96.2 0.027 5.8E-07 56.3 9.2 55 772-830 8-62 (274)
162 KOG1603 Copper chaperone [Inor 96.2 0.016 3.5E-07 48.8 6.7 56 128-186 8-63 (73)
163 TIGR01533 lipo_e_P4 5'-nucleot 96.2 0.024 5.2E-07 60.6 9.6 82 789-870 116-205 (266)
164 PRK09456 ?-D-glucose-1-phospha 96.1 0.0097 2.1E-07 61.4 6.1 85 791-875 84-180 (199)
165 PF09419 PGP_phosphatase: Mito 96.1 0.043 9.3E-07 54.1 10.1 111 766-878 36-163 (168)
166 PRK10444 UMP phosphatase; Prov 96.1 0.028 6E-07 60.0 9.6 47 784-830 10-59 (248)
167 KOG1603 Copper chaperone [Inor 96.0 0.029 6.3E-07 47.3 7.4 56 54-112 8-63 (73)
168 TIGR02247 HAD-1A3-hyp Epoxide 96.0 0.011 2.3E-07 61.7 5.9 86 790-875 93-191 (211)
169 PRK10725 fructose-1-P/6-phosph 95.8 0.016 3.4E-07 59.1 6.3 82 792-875 89-181 (188)
170 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.8 0.067 1.5E-06 57.5 11.1 53 774-830 4-63 (257)
171 PRK10563 6-phosphogluconate ph 95.8 0.015 3.4E-07 60.9 6.0 85 790-877 87-183 (221)
172 TIGR01993 Pyr-5-nucltdase pyri 95.5 0.031 6.7E-07 56.8 6.9 83 791-876 84-181 (184)
173 TIGR01675 plant-AP plant acid 95.4 0.091 2E-06 54.6 9.9 77 790-866 119-209 (229)
174 PLN02151 trehalose-phosphatase 95.3 0.18 3.9E-06 55.9 12.2 56 770-826 97-154 (354)
175 PRK10748 flavin mononucleotide 95.2 0.038 8.2E-07 58.7 6.7 83 791-879 113-207 (238)
176 TIGR01457 HAD-SF-IIA-hyp2 HAD- 95.2 0.12 2.7E-06 55.2 10.5 54 773-830 3-59 (249)
177 PHA02597 30.2 hypothetical pro 95.0 0.072 1.6E-06 54.8 7.9 83 791-875 74-169 (197)
178 COG1011 Predicted hydrolase (H 94.9 0.13 2.8E-06 54.1 9.5 114 790-906 98-227 (229)
179 COG0637 Predicted phosphatase/ 94.6 0.092 2E-06 55.0 7.5 87 789-875 84-181 (221)
180 PF13344 Hydrolase_6: Haloacid 94.6 0.034 7.3E-07 50.3 3.5 88 784-874 7-100 (101)
181 KOG3120 Predicted haloacid deh 94.4 0.061 1.3E-06 53.9 5.0 88 791-878 84-208 (256)
182 PLN02645 phosphoglycolate phos 94.3 0.073 1.6E-06 59.0 6.2 104 770-878 27-136 (311)
183 PLN02423 phosphomannomutase 93.9 0.47 1E-05 50.6 11.1 50 772-825 8-57 (245)
184 TIGR01684 viral_ppase viral ph 91.8 0.36 7.7E-06 51.7 6.5 60 772-834 127-189 (301)
185 KOG3040 Predicted sugar phosph 91.4 0.4 8.7E-06 47.8 5.8 49 782-830 14-65 (262)
186 PLN02177 glycerol-3-phosphate 91.1 1.6 3.4E-05 51.4 11.4 85 792-880 111-215 (497)
187 TIGR01663 PNK-3'Pase polynucle 91.1 0.43 9.4E-06 56.2 6.8 101 772-872 169-303 (526)
188 TIGR01493 HAD-SF-IA-v2 Haloaci 90.8 0.17 3.7E-06 50.7 2.8 75 791-872 90-175 (175)
189 PF03767 Acid_phosphat_B: HAD 90.5 0.29 6.4E-06 51.4 4.3 78 791-868 115-207 (229)
190 KOG3085 Predicted hydrolase (H 89.7 0.73 1.6E-05 48.1 6.3 96 791-887 113-221 (237)
191 TIGR01452 PGP_euk phosphoglyco 89.2 1.3 2.8E-05 48.2 8.3 99 773-877 4-108 (279)
192 TIGR02052 MerP mercuric transp 89.2 2.8 6.1E-05 36.1 9.1 65 125-189 24-88 (92)
193 PF12689 Acid_PPase: Acid Phos 89.1 1.4 3E-05 43.7 7.5 86 791-878 45-147 (169)
194 TIGR02251 HIF-SF_euk Dullard-l 89.0 0.47 1E-05 47.0 4.3 86 790-876 41-135 (162)
195 TIGR02052 MerP mercuric transp 89.0 2 4.3E-05 37.1 8.0 64 200-263 24-87 (92)
196 PHA03398 viral phosphatase sup 89.0 0.91 2E-05 48.7 6.6 60 772-834 129-191 (303)
197 TIGR01680 Veg_Stor_Prot vegeta 88.9 2.7 5.8E-05 44.7 9.9 78 789-866 143-235 (275)
198 PRK14054 methionine sulfoxide 88.8 0.7 1.5E-05 45.8 5.1 50 211-260 10-78 (172)
199 PF02358 Trehalose_PPase: Treh 88.3 1.4 2.9E-05 46.7 7.5 55 776-830 2-59 (235)
200 COG1877 OtsB Trehalose-6-phosp 88.0 5.4 0.00012 42.7 11.6 67 764-830 11-80 (266)
201 COG0647 NagD Predicted sugar p 87.6 3.6 7.9E-05 44.1 10.1 109 782-896 15-129 (269)
202 PF08235 LNS2: LNS2 (Lipin/Ned 87.5 2.9 6.3E-05 40.7 8.4 87 789-875 25-141 (157)
203 COG0241 HisB Histidinol phosph 87.5 3 6.4E-05 41.7 8.6 84 792-875 32-144 (181)
204 TIGR02244 HAD-IG-Ncltidse HAD 87.3 2.8 6E-05 46.7 9.2 37 793-829 186-223 (343)
205 COG0841 AcrB Cation/multidrug 86.5 1.1E+02 0.0025 39.5 25.6 127 62-189 60-213 (1009)
206 PRK05528 methionine sulfoxide 86.4 1.4 3E-05 42.9 5.5 50 211-260 8-71 (156)
207 TIGR01452 PGP_euk phosphoglyco 86.3 0.82 1.8E-05 49.8 4.5 82 793-875 145-242 (279)
208 TIGR02463 MPGP_rel mannosyl-3- 85.4 1.3 2.8E-05 46.3 5.4 52 776-831 4-56 (221)
209 PF13242 Hydrolase_like: HAD-h 84.6 1.2 2.5E-05 37.7 3.7 55 844-900 12-74 (75)
210 PRK13014 methionine sulfoxide 84.3 1.4 3E-05 44.2 4.6 49 212-260 16-83 (186)
211 PRK00058 methionine sulfoxide 84.0 1.6 3.5E-05 44.5 5.0 50 211-260 52-120 (213)
212 COG0225 MsrA Peptide methionin 83.6 2 4.2E-05 42.1 5.1 49 212-260 14-81 (174)
213 PF00873 ACR_tran: AcrB/AcrD/A 82.5 10 0.00022 49.6 12.8 136 52-188 45-213 (1021)
214 PTZ00445 p36-lilke protein; Pr 81.9 7.5 0.00016 39.7 8.6 117 759-875 31-200 (219)
215 TIGR00401 msrA methionine-S-su 81.8 2.9 6.4E-05 40.4 5.6 49 212-260 8-75 (149)
216 KOG4383 Uncharacterized conser 80.8 16 0.00034 43.1 11.6 37 445-484 162-198 (1354)
217 COG3700 AphA Acid phosphatase 80.4 2.9 6.2E-05 40.7 4.8 85 793-878 116-210 (237)
218 PF01625 PMSR: Peptide methion 78.8 4.1 8.9E-05 39.8 5.6 50 211-260 7-75 (155)
219 PLN03063 alpha,alpha-trehalose 78.7 32 0.00069 43.4 14.7 72 759-830 495-572 (797)
220 PF05822 UMPH-1: Pyrimidine 5' 77.9 8 0.00017 40.6 7.7 115 791-905 90-241 (246)
221 cd00371 HMA Heavy-metal-associ 77.4 14 0.0003 26.5 7.5 43 204-246 3-45 (63)
222 cd00371 HMA Heavy-metal-associ 76.9 17 0.00037 26.0 7.9 58 129-187 3-60 (63)
223 TIGR01460 HAD-SF-IIA Haloacid 76.3 15 0.00032 38.9 9.5 85 784-874 7-101 (236)
224 TIGR01459 HAD-SF-IIA-hyp4 HAD- 76.3 2.5 5.4E-05 45.0 3.6 81 793-875 140-236 (242)
225 KOG2882 p-Nitrophenyl phosphat 74.9 11 0.00025 40.3 7.9 92 784-877 31-129 (306)
226 PRK14054 methionine sulfoxide 74.4 5.8 0.00013 39.4 5.3 48 136-183 10-76 (172)
227 PRK13748 putative mercuric red 74.2 9.9 0.00022 46.0 8.6 67 127-194 3-69 (561)
228 TIGR01689 EcbF-BcbF capsule bi 72.5 8.2 0.00018 36.3 5.6 50 773-822 3-55 (126)
229 PRK05550 bifunctional methioni 72.1 5.7 0.00012 42.7 5.0 50 211-260 134-202 (283)
230 PRK13748 putative mercuric red 71.7 9.8 0.00021 46.1 7.7 61 202-263 3-63 (561)
231 COG2503 Predicted secreted aci 71.1 19 0.00041 37.3 8.1 79 791-869 122-209 (274)
232 TIGR01456 CECR5 HAD-superfamil 70.3 20 0.00043 39.9 9.1 86 784-875 9-106 (321)
233 TIGR01501 MthylAspMutase methy 68.8 32 0.00069 32.7 8.7 70 780-851 53-130 (134)
234 PRK05528 methionine sulfoxide 67.3 11 0.00024 36.7 5.4 49 136-184 8-70 (156)
235 PLN03064 alpha,alpha-trehalose 66.7 53 0.0012 41.8 12.5 72 759-830 579-662 (934)
236 KOG1635 Peptide methionine sul 65.8 11 0.00025 36.5 5.0 50 211-260 31-99 (191)
237 PF02401 LYTB: LytB protein; 65.3 80 0.0017 34.2 12.0 101 782-883 156-267 (281)
238 PF06506 PrpR_N: Propionate ca 64.9 42 0.00092 33.6 9.4 126 789-917 15-172 (176)
239 PRK02261 methylaspartate mutas 64.5 39 0.00084 32.3 8.5 74 766-839 27-122 (137)
240 COG4669 EscJ Type III secretor 64.2 27 0.00059 36.1 7.6 106 149-260 42-174 (246)
241 PRK00058 methionine sulfoxide 64.0 12 0.00025 38.5 5.1 48 136-183 52-118 (213)
242 cd02072 Glm_B12_BD B12 binding 62.7 38 0.00083 31.9 7.9 69 779-849 50-126 (128)
243 PRK13014 methionine sulfoxide 62.2 11 0.00023 37.9 4.4 49 136-184 15-82 (186)
244 PRK10555 aminoglycoside/multid 61.9 52 0.0011 43.1 11.7 120 140-260 63-210 (1037)
245 PRK10555 aminoglycoside/multid 61.8 3.3E+02 0.0072 35.7 19.1 122 64-185 61-210 (1037)
246 PLN02645 phosphoglycolate phos 60.9 17 0.00037 40.2 6.3 58 846-905 240-307 (311)
247 PRK01045 ispH 4-hydroxy-3-meth 58.6 2.8E+02 0.0061 30.4 15.9 103 781-883 156-268 (298)
248 PRK10503 multidrug efflux syst 58.5 3.6E+02 0.0078 35.4 18.5 134 53-186 57-221 (1040)
249 PF08645 PNK3P: Polynucleotide 55.8 12 0.00026 36.8 3.6 73 793-865 31-130 (159)
250 PF11491 DUF3213: Protein of u 55.7 19 0.0004 30.5 3.9 51 212-262 11-61 (88)
251 KOG3128 Uncharacterized conser 55.6 74 0.0016 33.4 9.0 114 792-905 139-290 (298)
252 COG4004 Uncharacterized protei 55.6 39 0.00084 29.2 5.8 46 174-243 13-58 (96)
253 PRK15127 multidrug efflux syst 54.4 5.8E+02 0.013 33.6 19.4 123 64-186 61-211 (1049)
254 PF00875 DNA_photolyase: DNA p 53.7 68 0.0015 31.6 8.6 71 797-867 56-132 (165)
255 COG0841 AcrB Cation/multidrug 53.5 1.1E+02 0.0024 39.7 12.3 121 139-260 63-209 (1009)
256 PF01625 PMSR: Peptide methion 53.3 31 0.00067 33.7 5.8 50 136-185 7-75 (155)
257 cd02071 MM_CoA_mut_B12_BD meth 52.9 39 0.00083 31.5 6.3 59 781-839 52-112 (122)
258 KOG2914 Predicted haloacid-hal 52.5 39 0.00085 35.2 6.7 85 791-876 92-192 (222)
259 TIGR02250 FCP1_euk FCP1-like p 52.0 26 0.00056 34.4 5.1 44 790-834 57-101 (156)
260 PRK14018 trifunctional thiored 51.1 21 0.00046 42.2 5.1 49 212-260 206-272 (521)
261 PRK14194 bifunctional 5,10-met 51.1 71 0.0015 34.9 8.7 52 844-895 145-209 (301)
262 KOG3109 Haloacid dehalogenase- 50.6 1.1E+02 0.0023 31.6 9.1 90 783-875 91-200 (244)
263 COG0225 MsrA Peptide methionin 49.8 30 0.00065 34.1 5.0 48 136-183 13-79 (174)
264 PRK03692 putative UDP-N-acetyl 47.4 1.2E+02 0.0025 32.3 9.5 123 797-921 95-234 (243)
265 TIGR00401 msrA methionine-S-su 47.2 37 0.00081 32.9 5.3 48 136-183 7-73 (149)
266 PF10173 Mit_KHE1: Mitochondri 46.6 74 0.0016 32.2 7.5 74 218-313 78-157 (187)
267 PLN02591 tryptophan synthase 46.0 3.3E+02 0.0072 29.0 12.7 124 740-881 82-220 (250)
268 PRK00087 4-hydroxy-3-methylbut 44.9 4E+02 0.0087 32.9 15.0 101 783-883 156-264 (647)
269 TIGR01106 ATPase-IIC_X-K sodiu 44.8 3.8E+02 0.0081 35.1 15.4 197 404-624 112-324 (997)
270 PRK10503 multidrug efflux syst 44.1 1.6E+02 0.0036 38.5 12.1 120 140-260 74-220 (1040)
271 PF01206 TusA: Sulfurtransfera 44.0 64 0.0014 26.5 5.6 53 53-115 2-54 (70)
272 TIGR01524 ATPase-IIIB_Mg magne 43.9 1.8E+02 0.004 37.2 12.3 105 403-512 96-221 (867)
273 CHL00200 trpA tryptophan synth 43.7 4.4E+02 0.0096 28.3 15.8 123 740-881 95-233 (263)
274 PRK15122 magnesium-transportin 43.4 1E+02 0.0023 39.5 10.0 184 408-624 124-349 (903)
275 PRK05550 bifunctional methioni 43.4 37 0.00081 36.6 5.0 47 136-182 134-199 (283)
276 PRK15127 multidrug efflux syst 42.9 1.6E+02 0.0035 38.6 11.8 120 140-260 63-210 (1049)
277 COG4229 Predicted enolase-phos 41.9 84 0.0018 31.2 6.6 86 789-874 101-198 (229)
278 TIGR00915 2A0602 The (Largely 41.8 1.5E+02 0.0032 39.0 11.1 121 140-260 63-210 (1044)
279 PRK10614 multidrug efflux syst 41.5 1.3E+02 0.0028 39.4 10.6 120 140-260 65-211 (1025)
280 TIGR00216 ispH_lytB (E)-4-hydr 41.5 4.9E+02 0.011 28.2 16.7 101 783-883 156-266 (280)
281 PF01206 TusA: Sulfurtransfera 41.5 75 0.0016 26.1 5.7 54 127-190 2-55 (70)
282 PF15584 Imm44: Immunity prote 40.7 14 0.0003 32.0 1.0 19 462-480 13-31 (94)
283 COG0809 QueA S-adenosylmethion 40.4 37 0.00081 37.0 4.4 111 746-862 141-258 (348)
284 PRK14170 bifunctional 5,10-met 40.2 1.1E+02 0.0023 33.2 8.0 52 844-895 143-207 (284)
285 PRK09577 multidrug efflux prot 39.8 2.1E+02 0.0047 37.4 12.2 121 140-261 63-210 (1032)
286 cd04888 ACT_PheB-BS C-terminal 38.9 1.5E+02 0.0032 24.4 7.2 59 174-232 13-74 (76)
287 COG1888 Uncharacterized protei 38.4 1.2E+02 0.0026 26.3 6.2 45 217-261 24-73 (97)
288 PF00873 ACR_tran: AcrB/AcrD/A 38.1 59 0.0013 42.6 6.8 122 140-262 63-212 (1021)
289 cd01994 Alpha_ANH_like_IV This 38.0 1.7E+02 0.0037 29.8 8.8 70 796-865 12-100 (194)
290 COG1832 Predicted CoA-binding 37.8 1.5E+02 0.0032 28.2 7.3 89 781-871 17-115 (140)
291 TIGR00640 acid_CoA_mut_C methy 37.5 88 0.0019 29.7 6.1 67 779-845 53-122 (132)
292 KOG1618 Predicted phosphatase 37.4 1.1E+02 0.0025 33.1 7.4 83 773-862 35-129 (389)
293 PRK12360 4-hydroxy-3-methylbut 37.4 5.7E+02 0.012 27.8 15.8 101 783-883 159-267 (281)
294 PF11491 DUF3213: Protein of u 36.9 43 0.00094 28.4 3.3 53 137-189 11-63 (88)
295 COG1888 Uncharacterized protei 36.2 1.8E+02 0.004 25.3 6.9 66 125-190 7-77 (97)
296 COG0078 ArgF Ornithine carbamo 35.9 4.4E+02 0.0095 28.8 11.5 92 766-866 66-166 (310)
297 PRK15424 propionate catabolism 35.8 3.9E+02 0.0085 32.0 12.5 78 794-873 94-173 (538)
298 COG4420 Predicted membrane pro 35.4 1.5E+02 0.0033 29.6 7.3 48 542-589 38-86 (191)
299 TIGR00915 2A0602 The (Largely 34.9 2.7E+02 0.0058 36.6 12.0 122 64-185 61-210 (1044)
300 TIGR00262 trpA tryptophan synt 34.7 3.4E+02 0.0074 29.0 10.8 109 760-881 105-229 (256)
301 PRK14191 bifunctional 5,10-met 34.6 1.5E+02 0.0032 32.2 8.0 44 852-895 156-207 (285)
302 COG4996 Predicted phosphatase 33.9 76 0.0016 29.7 4.7 72 791-862 41-125 (164)
303 PRK14175 bifunctional 5,10-met 32.9 1.7E+02 0.0038 31.7 8.2 44 852-895 157-208 (286)
304 PRK14188 bifunctional 5,10-met 32.9 1.6E+02 0.0034 32.3 7.9 52 844-895 144-208 (296)
305 TIGR02329 propionate_PrpR prop 32.6 5.3E+02 0.012 30.8 13.0 103 794-914 84-188 (526)
306 PRK14172 bifunctional 5,10-met 32.1 1.6E+02 0.0034 32.0 7.6 44 852-895 157-208 (278)
307 PRK13125 trpA tryptophan synth 31.9 5.5E+02 0.012 27.1 11.8 86 794-880 116-215 (244)
308 PRK14189 bifunctional 5,10-met 31.7 1.5E+02 0.0033 32.2 7.4 52 844-895 144-208 (285)
309 cd04724 Tryptophan_synthase_al 31.6 2.4E+02 0.0052 29.9 9.0 78 789-866 111-199 (242)
310 KOG4539 Uncharacterized conser 31.1 26 0.00057 35.4 1.4 73 219-314 99-171 (274)
311 TIGR03556 photolyase_8HDF deox 31.0 2.1E+02 0.0046 33.7 9.3 63 795-857 56-123 (471)
312 TIGR02765 crypto_DASH cryptoch 31.0 1.7E+02 0.0036 34.1 8.4 61 795-855 62-127 (429)
313 COG2177 FtsX Cell division pro 30.9 7.5E+02 0.016 27.1 21.1 87 126-230 61-149 (297)
314 PF02680 DUF211: Uncharacteriz 30.6 94 0.002 27.4 4.5 61 200-261 6-71 (95)
315 PF02682 AHS1: Allophanate hyd 30.5 95 0.0021 31.9 5.5 45 214-260 27-73 (202)
316 cd01917 ACS_2 Acetyl-CoA synth 30.5 2.3E+02 0.005 30.4 8.2 123 779-906 124-280 (287)
317 PRK11152 ilvM acetolactate syn 30.3 2.7E+02 0.0059 23.6 7.2 65 90-157 6-75 (76)
318 cd00532 MGS-like MGS-like doma 30.1 3.3E+02 0.0072 24.8 8.6 75 785-864 3-80 (112)
319 PRK14018 trifunctional thiored 29.7 4.6E+02 0.01 31.2 11.6 48 136-183 205-270 (521)
320 PF12710 HAD: haloacid dehalog 29.3 28 0.00061 35.0 1.4 13 651-663 1-13 (192)
321 PRK14179 bifunctional 5,10-met 29.2 2.5E+02 0.0054 30.5 8.6 52 844-895 144-208 (284)
322 PF04312 DUF460: Protein of un 29.1 4.4E+02 0.0096 25.1 9.0 69 779-850 51-123 (138)
323 PRK14186 bifunctional 5,10-met 29.1 1.7E+02 0.0038 31.9 7.4 44 852-895 157-208 (297)
324 cd00860 ThrRS_anticodon ThrRS 29.1 1.6E+02 0.0034 25.2 6.0 45 786-830 7-52 (91)
325 PF03120 DNA_ligase_OB: NAD-de 29.0 28 0.00061 29.9 1.1 22 455-476 45-67 (82)
326 PRK09579 multidrug efflux prot 28.7 4.5E+02 0.0097 34.5 12.4 121 139-259 64-209 (1017)
327 TIGR01517 ATPase-IIB_Ca plasma 28.7 2.8E+02 0.0062 35.9 10.6 157 451-627 188-359 (941)
328 TIGR03679 arCOG00187 arCOG0018 28.5 3.6E+02 0.0078 28.0 9.5 70 796-865 10-98 (218)
329 COG1171 IlvA Threonine dehydra 28.5 1.6E+02 0.0035 32.8 7.1 59 810-871 77-138 (347)
330 COG0731 Fe-S oxidoreductases [ 28.2 3E+02 0.0064 30.1 8.9 76 789-867 90-189 (296)
331 TIGR01494 ATPase_P-type ATPase 28.2 1.1E+03 0.023 28.0 14.8 153 451-627 56-213 (499)
332 PF02680 DUF211: Uncharacteriz 27.9 1.1E+02 0.0025 26.9 4.6 65 125-190 6-75 (95)
333 PRK10614 multidrug efflux syst 27.7 8.6E+02 0.019 31.9 14.8 122 64-185 578-730 (1025)
334 PRK15348 type III secretion sy 27.5 4.4E+02 0.0096 28.0 9.8 33 214-246 109-154 (249)
335 PRK11018 hypothetical protein; 27.5 2.3E+02 0.0049 24.0 6.4 56 126-191 9-64 (78)
336 cd02067 B12-binding B12 bindin 27.4 1.6E+02 0.0035 27.0 6.1 55 781-835 52-108 (119)
337 cd05017 SIS_PGI_PMI_1 The memb 27.4 1.4E+02 0.0031 27.4 5.7 40 793-834 56-95 (119)
338 PF13380 CoA_binding_2: CoA bi 27.0 90 0.002 28.8 4.2 40 792-831 64-104 (116)
339 COG2062 SixA Phosphohistidine 27.0 2.4E+02 0.0052 27.9 7.3 70 793-862 31-110 (163)
340 KOG2882 p-Nitrophenyl phosphat 26.7 8.7E+02 0.019 26.5 12.2 82 793-875 167-264 (306)
341 PRK15108 biotin synthase; Prov 26.5 7.1E+02 0.015 27.9 12.1 72 794-865 111-199 (345)
342 PF00763 THF_DHG_CYH: Tetrahyd 26.4 1.3E+02 0.0028 27.9 5.1 64 790-853 10-86 (117)
343 COG2177 FtsX Cell division pro 26.3 2.6E+02 0.0056 30.6 8.2 78 62-156 71-150 (297)
344 PRK11018 hypothetical protein; 26.2 1.9E+02 0.0041 24.5 5.7 53 201-263 9-61 (78)
345 PF03808 Glyco_tran_WecB: Glyc 26.1 1.6E+02 0.0034 29.3 6.1 114 797-911 38-169 (172)
346 cd04726 KGPDC_HPS 3-Keto-L-gul 25.9 6.3E+02 0.014 25.4 10.8 86 794-880 90-187 (202)
347 COG0761 lytB 4-Hydroxy-3-methy 25.3 9E+02 0.019 26.2 16.1 99 783-881 160-268 (294)
348 COG0415 PhrB Deoxyribodipyrimi 24.7 2.4E+02 0.0051 32.9 7.8 64 796-859 57-125 (461)
349 TIGR01460 HAD-SF-IIA Haloacid 24.7 5.4E+02 0.012 27.0 10.2 31 845-875 197-229 (236)
350 TIGR00914 2A0601 heavy metal e 24.4 5.3E+02 0.012 34.0 12.1 123 138-260 589-753 (1051)
351 PRK13111 trpA tryptophan synth 24.3 8.9E+02 0.019 25.9 16.6 123 740-880 93-229 (258)
352 PTZ00314 inosine-5'-monophosph 24.0 7.1E+02 0.015 29.6 11.9 113 759-874 180-304 (495)
353 TIGR01303 IMP_DH_rel_1 IMP deh 23.9 1.2E+03 0.025 27.6 13.6 64 818-882 227-299 (475)
354 PF05152 DUF705: Protein of un 23.7 2.1E+02 0.0045 30.9 6.5 66 771-836 122-187 (297)
355 cd03421 SirA_like_N SirA_like_ 23.6 2.1E+02 0.0046 23.2 5.4 52 54-116 2-53 (67)
356 PRK14176 bifunctional 5,10-met 23.6 2.2E+02 0.0047 31.0 6.8 43 852-894 163-213 (287)
357 COG4669 EscJ Type III secretor 23.5 1.6E+02 0.0035 30.7 5.5 90 59-158 15-130 (246)
358 cd06279 PBP1_LacI_like_3 Ligan 23.3 4.6E+02 0.01 28.0 9.8 38 798-835 47-85 (283)
359 PF09580 Spore_YhcN_YlaJ: Spor 22.7 1.6E+02 0.0034 29.4 5.4 49 212-260 75-125 (177)
360 PRK10481 hypothetical protein; 22.4 9E+02 0.02 25.3 11.3 109 736-854 64-183 (224)
361 COG0647 NagD Predicted sugar p 22.3 1.8E+02 0.0038 31.4 5.9 33 845-877 199-232 (269)
362 TIGR03849 arch_ComA phosphosul 22.2 3.1E+02 0.0068 28.9 7.4 62 794-857 41-117 (237)
363 TIGR03679 arCOG00187 arCOG0018 22.1 3.9E+02 0.0086 27.7 8.4 64 794-859 73-141 (218)
364 TIGR00288 conserved hypothetic 22.0 7.7E+02 0.017 24.3 12.8 91 759-861 43-137 (160)
365 COG3981 Predicted acetyltransf 22.0 2.9E+02 0.0063 27.4 6.6 57 774-830 72-155 (174)
366 TIGR00696 wecB_tagA_cpsF bacte 21.9 3.8E+02 0.0081 26.9 7.8 117 797-914 38-171 (177)
367 PRK09577 multidrug efflux prot 21.8 7.4E+02 0.016 32.6 12.6 125 64-188 61-212 (1032)
368 PRK05585 yajC preprotein trans 21.6 4.4E+02 0.0094 24.0 7.4 29 414-442 33-61 (106)
369 PF00072 Response_reg: Respons 21.6 2.6E+02 0.0056 24.6 6.2 53 794-848 56-110 (112)
370 KOG3139 N-acetyltransferase [G 21.6 6.6E+02 0.014 24.7 8.8 79 753-831 36-142 (165)
371 PRK09479 glpX fructose 1,6-bis 21.5 1.7E+02 0.0037 31.9 5.4 78 793-871 166-283 (319)
372 cd04236 AAK_NAGS-Urea AAK_NAGS 21.5 3.1E+02 0.0067 29.6 7.5 101 746-854 7-112 (271)
373 PRK13670 hypothetical protein; 21.3 6.6E+02 0.014 28.7 10.6 91 781-871 2-112 (388)
374 PF12791 RsgI_N: Anti-sigma fa 21.2 1.7E+02 0.0038 22.8 4.2 39 433-476 3-42 (56)
375 PRK14171 bifunctional 5,10-met 21.0 3.2E+02 0.007 29.7 7.5 52 844-895 145-209 (288)
376 PRK11026 ftsX cell division AB 20.7 5.3E+02 0.012 28.4 9.4 91 126-231 68-162 (309)
377 cd01516 FBPase_glpX Bacterial 20.5 1.9E+02 0.0041 31.4 5.5 79 793-871 163-280 (309)
378 COG0313 Predicted methyltransf 20.3 6.5E+02 0.014 27.1 9.4 88 763-858 70-161 (275)
379 cd04614 CBS_pair_1 The CBS dom 20.3 3.7E+02 0.008 23.2 6.8 54 758-811 11-75 (96)
380 COG0552 FtsY Signal recognitio 20.2 9.1E+02 0.02 26.9 10.7 105 758-873 155-278 (340)
381 cd03420 SirA_RHOD_Pry_redox Si 20.2 2.8E+02 0.006 22.8 5.5 54 128-191 2-55 (69)
382 TIGR00914 2A0601 heavy metal e 20.1 1.3E+03 0.027 30.5 14.3 122 64-185 589-753 (1051)
383 PRK10929 putative mechanosensi 20.1 4.7E+02 0.01 34.3 9.9 47 372-424 687-733 (1109)
384 PF06941 NT5C: 5' nucleotidase 20.0 78 0.0017 32.1 2.6 77 791-878 73-161 (191)
385 PF04273 DUF442: Putative phos 20.0 2.7E+02 0.0058 25.5 5.8 72 796-868 16-101 (110)
386 PRK04302 triosephosphate isome 20.0 6.3E+02 0.014 26.2 9.5 87 792-880 99-203 (223)
No 1
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-160 Score=1361.51 Aligned_cols=899 Identities=48% Similarity=0.760 Sum_probs=824.5
Q ss_pred cCCCChhHHHHHHHHHhCCCCceEEEeeccCceEEEEeCCCCCCHHHHHHHHHHcCCCCCCCC--cccceEEEEeecCcc
Q 001981 57 REIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAGFPVDDFP--EQDIAVCRLRIKGMM 134 (986)
Q Consensus 57 ~gm~C~~C~~~I~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~G~~~~~~~--~~~~~~~~~~i~gm~ 134 (986)
.||||..|.+.+++++++.+|+.++.+++.++.+++.|+ +..+++.+.+.++++||++.... .....+..+++.||+
T Consensus 1 ~gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~-~~~~~~~i~~~ied~gf~~~~~~~~~~~~~~~~l~v~Gmt 79 (951)
T KOG0207|consen 1 KGMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYD-NIVSPESIKETIEDMGFEASLLSDSEITASKCYLSVNGMT 79 (951)
T ss_pred CCccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEe-eccCHHHHHHHhhcccceeeecccCccccceeEEEecCce
Confidence 489999999999999999999999999999999999999 77999999999999999986332 223346789999999
Q ss_pred ChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCCcccccCCccc--cceeeeecCCCCch
Q 001981 135 CTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAGFGADLISSGKDV--NKVHLKLEGLNSSE 212 (986)
Q Consensus 135 C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~--~~~~~~v~Gm~c~~ 212 (986)
|.+|++.+|+.+++.+|+.++.+.+..+++.+.|||..++.+.+.+.++++||++...+..+.. ..+.|.|.||+|.+
T Consensus 80 C~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~~~~~~~i~L~v~g~~c~s 159 (951)
T KOG0207|consen 80 CASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVNGNSNQKIYLDVLGMTCAS 159 (951)
T ss_pred eHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcccCCCCCcEEEEeecccccc
Confidence 9999999999999999999999999999999999999999999999999999999876654332 58999999999999
Q ss_pred hHHHHHHhhcCCCCeEEEEEecCCCEEEEEeCCCCCChHHHHHHHHHhcCCCccccccccCCcchhhhHHHHHHHHHHHH
Q 001981 213 DATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEEASHGPNIYHASLYTPPKRRETERLKETQMYRNR 292 (986)
Q Consensus 213 c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (986)
|+..||+.+.+++||.++++++.++++.|.|||..++++++.+.+++.||.+...... +...........+.+.|++.
T Consensus 160 ~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~~~~--~~~~~~~l~~~~ei~~w~~~ 237 (951)
T KOG0207|consen 160 CVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVRPYG--DTTFKNSLKHKEEIRKWKRP 237 (951)
T ss_pred hhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceeeecc--ccchhhhhhhhhHHHhcchH
Confidence 9999999999999999999999999999999999999999999999999875422100 00111112234566888888
Q ss_pred HHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHhhccceeEEecHHHHHHHHHHHhcCCCCcchhHhHH
Q 001981 293 FFISCLFSVPVLLFSMVLPMIPTYGNWLDYKVHNMLTIGMLLRWILCTPVQFIVGQRFYVGAYHALRRRSANMDVLVALG 372 (986)
Q Consensus 293 l~~~l~lal~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~v~~~~g~~~~~~a~~~l~~~~~~md~Lv~l~ 372 (986)
+...+.+++|+++..++.++.......+. .+.++.++..++.+.|++|+||..||+||..||++|++++.|||+|++++
T Consensus 238 fl~s~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~vqf~~G~~fy~~A~ksL~~g~~nMdvLv~L~ 316 (951)
T KOG0207|consen 238 FLISLGFSLPVSFAMIICPPLAWILALLV-PFLPGLSYGNSLSFVLATPVQFVGGRPFYLAAYKSLKRGSANMDVLVVLG 316 (951)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhhhc-cccccchhhhHHHhhhheeeEEecceeeHHHHHHHHhcCCCCceeehhhH
Confidence 88899999999888777655432122222 33445677789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeE
Q 001981 373 TNAAYFYSVYIAVKALTSNTFEGQDFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISE 452 (986)
Q Consensus 373 ~~~a~~~s~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~ 452 (986)
+.++|+||.+..+..... +. +..|||++.|++.|+++|+|+|.+++.|+..++.+|+++.|.++.++ .+|+ .+
T Consensus 317 t~aay~~S~~~~~~~~~~-~~-~~tfFdt~~MLi~fi~lgr~LE~~Ak~kts~alskLmsl~p~~a~ii---~~g~--~e 389 (951)
T KOG0207|consen 317 TTAAYFYSIFSLLAAVVF-DS-PPTFFDTSPMLITFITLGRWLESLAKGKTSEALSKLMSLAPSKATII---EDGS--EE 389 (951)
T ss_pred HHHHHHHHHHHHHHHHHc-cC-cchhccccHHHHHHHHHHHHHHHHhhccchHHHHHHhhcCcccceEe---ecCC--cc
Confidence 999999999998877665 33 78999999999999999999999999999999999999999999999 5662 37
Q ss_pred EEeeCCCcCCCcEEEEcCCCcccccEEEEeccceeeccccccCCcceecCCCCceeeeeeecCceEEEEEEEeCCchHHH
Q 001981 453 MDINTQLMQKNDIIKILPGEKVPVDGVVTDGQSYVNESMITGEAKPIAKGPGDKVIGGTMNENGCLQVKATHVGSETALS 532 (986)
Q Consensus 453 ~~i~~~~l~~GDii~v~~Ge~IPaDg~vl~G~~~Vdes~lTGEs~pv~k~~g~~v~aGs~~~~g~~~~~v~~~g~~t~~~ 532 (986)
++|+.+.|++||+|.|.||++||+||+|++|+++||||++|||+.||.|++|+.|.+||+|.+|.+.++++++|.||.++
T Consensus 390 ~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gss~VDEs~iTGEs~PV~Kk~gs~ViaGsiN~nG~l~VkaT~~g~dttla 469 (951)
T KOG0207|consen 390 KEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGSSEVDESLITGESMPVPKKKGSTVIAGSINLNGTLLVKATKVGGDTTLA 469 (951)
T ss_pred eEeeeeeeccCCEEEECCCCccccccEEEeCceeechhhccCCceecccCCCCeeeeeeecCCceEEEEEEeccccchHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc-cCCCCCcccccchhhHHHHHHHHhhhhhhhcc
Q 001981 533 QIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGV-AGLYPKHWIPKVMDEFELALQFGISVLVVACP 611 (986)
Q Consensus 533 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P 611 (986)
||+++++++|.+|+|+|+++|+++.||+|.++++++.+|++|++.+. ...++..|. ..+..+++++++|++++||
T Consensus 470 ~IvkLVEEAQ~sKapiQq~aDkia~yFvP~Vi~lS~~t~~~w~~~g~~~~~~~~~~~----~~~~~a~~~aisVlviACP 545 (951)
T KOG0207|consen 470 QIVKLVEEAQLSKAPIQQLADKIAGYFVPVVIVLSLATFVVWILIGKIVFKYPRSFF----DAFSHAFQLAISVLVIACP 545 (951)
T ss_pred HHHHHHHHHHcccchHHHHHHHhhhcCCchhhHHHHHHHHHHHHHccccccCcchhh----HHHHHHHHhhheEEEEECc
Confidence 99999999999999999999999999999999999999999999875 233344443 5788999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCC-CCHHHHHHHHHHHHhc
Q 001981 612 CALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSH-FSMEEFCDMATAAEAN 690 (986)
Q Consensus 612 ~al~la~~~a~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~-~~~~~~~~~~~~~e~~ 690 (986)
|+|+||+|+|++.+++.++++|+|+|+++++|.+.++++|+||||||||+|+|.|.++..+.+ .+..+++.++++.|..
T Consensus 546 CaLgLATPtAvmvatgvgA~nGvLIKGge~LE~~hkv~tVvFDKTGTLT~G~~~V~~~~~~~~~~~~~e~l~~v~a~Es~ 625 (951)
T KOG0207|consen 546 CALGLATPTAVMVATGVGATNGVLIKGGEALEKAHKVKTVVFDKTGTLTEGKPTVVDFKSLSNPISLKEALALVAAMESG 625 (951)
T ss_pred hhhhcCCceEEEEEechhhhcceEEcCcHHHHHHhcCCEEEEcCCCceecceEEEEEEEecCCcccHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999876 8899999999999999
Q ss_pred CCChHHHHHHHHHHHhhhhcCCCCCCCccccceeeeeCCe--eEEEECCEEEEEecHHHHHhcCCCCChhhHHHHHHHHh
Q 001981 691 SEHPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAG--VSGKVGDRTVLVGNKRLMMAFHVPVGPEVDDYMMKNEQ 768 (986)
Q Consensus 691 s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g--~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (986)
++||+++||++|+++..... ....+.+|+..+|.| +.+.++++.+.+||++++..++...++++.+.+.+.+.
T Consensus 626 SeHPig~AIv~yak~~~~~~-----~~~~~~~~~~~pg~g~~~~~~~~~~~i~iGN~~~~~r~~~~~~~~i~~~~~~~e~ 700 (951)
T KOG0207|consen 626 SEHPIGKAIVDYAKEKLVEP-----NPEGVLSFEYFPGEGIYVTVTVDGNEVLIGNKEWMSRNGCSIPDDILDALTESER 700 (951)
T ss_pred CcCchHHHHHHHHHhccccc-----CccccceeecccCCCcccceEEeeeEEeechHHHHHhcCCCCchhHHHhhhhHhh
Confidence 99999999999999876321 234567889999999 77888999999999999999999999999999999999
Q ss_pred ccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecCcccHHHHHHH
Q 001981 769 LARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKE 848 (986)
Q Consensus 769 ~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~ 848 (986)
.|+++++++.|+++.|++.++|++|+++.++|..||++|++++|+|||+..+|+++|+++||+++|+++.|++|.++|+.
T Consensus 701 ~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~~V~aev~P~~K~~~Ik~ 780 (951)
T KOG0207|consen 701 KGQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGIDNVYAEVLPEQKAEKIKE 780 (951)
T ss_pred cCceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhCcceEEeccCchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHcCCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001981 849 LQLKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVL 928 (986)
Q Consensus 849 l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~ 928 (986)
+|+++..|+|||||+||+|||.+|||||++|.|++++.++||+||++||+.+++.++++||+++++||+|++|++.||++
T Consensus 781 lq~~~~~VaMVGDGINDaPALA~AdVGIaig~gs~vAieaADIVLmrn~L~~v~~ai~LSrkt~~rIk~N~~~A~~yn~~ 860 (951)
T KOG0207|consen 781 IQKNGGPVAMVGDGINDAPALAQADVGIAIGAGSDVAIEAADIVLMRNDLRDVPFAIDLSRKTVKRIKLNFVWALIYNLV 860 (951)
T ss_pred HHhcCCcEEEEeCCCCccHHHHhhccceeeccccHHHHhhCCEEEEccchhhhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCCcHHHHHHHhhchhHhHhhhhhhcccCCCCCc
Q 001981 929 AVPIAAGILYPFTGIRLPPWLAGACMAASSLSVLCSSLLLQSYKKPLH 976 (986)
Q Consensus 929 ~i~la~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~~~~~~ 976 (986)
+||+|+|.|.|+ |+.|+||+|+++|++||+.|++|||.|++||+|..
T Consensus 861 ~IpIAagvF~P~-~~~L~Pw~A~lama~SSvsVv~sSllLk~~k~p~~ 907 (951)
T KOG0207|consen 861 GIPIAAGVFAPF-GIVLPPWMASLAMAASSVSVVLSSLLLKRYKKPTI 907 (951)
T ss_pred hhhhheecccCC-ccccCchHHHHHHHhhhHHHhhhHHHHhhcccccc
Confidence 999999999998 59999999999999999999999999999999864
No 2
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-140 Score=1230.04 Aligned_cols=707 Identities=45% Similarity=0.712 Sum_probs=641.9
Q ss_pred ceeeeecCCCCchhHHHHHHhhcCCCCeEEEEEecCCCEEEEEeCCCCCC-hHHHHHHHHHhcCCCccccccccCCcchh
Q 001981 200 KVHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTG-PRSIIQYLEEASHGPNIYHASLYTPPKRR 278 (986)
Q Consensus 200 ~~~~~v~Gm~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~~~~-~~~i~~~i~~~g~~~~~~~~~~~~~~~~~ 278 (986)
+.+|.|+||+|++|+++|| .|+++|||.+++||+.++++.|.||+...+ .+++.+.++..||.+... . ......
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~~-~--~~~~~~- 77 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARLT-A--ALADPA- 77 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCcccccc-c--cccchh-
Confidence 5689999999999999999 999999999999999999999999987766 799999999999975320 0 000000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHhhccceeEEecHHHHHHHHHHH
Q 001981 279 ETERLKETQMYRNRFFISCLFSVPVLLFSMVLPMIPTYGNWLDYKVHNMLTIGMLLRWILCTPVQFIVGQRFYVGAYHAL 358 (986)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~l~lal~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~v~~~~g~~~~~~a~~~l 358 (986)
....... +...++++.+.++++++++..+.... ......|+.+++++|++|+.|+|||+.+|+.+
T Consensus 78 ~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~v~~~~g~~f~~~a~~~l 142 (713)
T COG2217 78 EAEARLL-RELLRRLIIAGLLTLPLLLLSLGLLL--------------GAFLLPWVSFLLATPVLFYGGWPFYRGAWRAL 142 (713)
T ss_pred hhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhc--------------chhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 0000001 22234444444444444433221111 00234578889999999999999999999999
Q ss_pred hcCCCCcchhHhHHHHHHHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeE
Q 001981 359 RRRSANMDVLVALGTNAAYFYSVYIAVKALTSNTFEGQDFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTA 438 (986)
Q Consensus 359 ~~~~~~md~Lv~l~~~~a~~~s~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~ 438 (986)
|++.+|||+|+++|+.+||+||.|.++.+ .||++++++++|+++|+|+|.+++.|+++++++|.++.|+++
T Consensus 143 ~~~~~~md~Lv~la~~~A~~~s~~~~~~~---------~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A 213 (713)
T COG2217 143 RRGRLNMDTLVALATIGAYAYSLYATLFP---------VYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTA 213 (713)
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHhhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEE
Confidence 99999999999999999999999988874 799999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCcccccEEEEeccceeeccccccCCcceecCCCCceeeeeeecCceE
Q 001981 439 HLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVVTDGQSYVNESMITGEAKPIAKGPGDKVIGGTMNENGCL 518 (986)
Q Consensus 439 ~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaDg~vl~G~~~Vdes~lTGEs~pv~k~~g~~v~aGs~~~~g~~ 518 (986)
+++. +|| ++++||+++|++||+|+|+|||+||+||+|++|++.||||+|||||.|+.|.+||.|++||+|.+|.+
T Consensus 214 ~~~~--~~~---~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s~vDeS~iTGEs~PV~k~~Gd~V~aGtiN~~G~l 288 (713)
T COG2217 214 TVVR--GDG---EEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSSSVDESMLTGESLPVEKKPGDEVFAGTVNLDGSL 288 (713)
T ss_pred EEEe--cCC---cEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcEEeecchhhCCCCCEecCCCCEEeeeEEECCccE
Confidence 8874 466 48899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCchHHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHH
Q 001981 519 QVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELA 598 (986)
Q Consensus 519 ~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (986)
+++|+++|.||+++||+++++++|.+|+|+|+++||++.||+|.++++++++|++|++.+. .+|..+
T Consensus 289 ~i~vt~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~~~~-------------~~~~~a 355 (713)
T COG2217 289 TIRVTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFGG-------------GDWETA 355 (713)
T ss_pred EEEEEecCccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHHhcC-------------CcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887651 257789
Q ss_pred HHHHhhhhhhhcccchhhhHHHHHHHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCCCCHH
Q 001981 599 LQFGISVLVVACPCALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSME 678 (986)
Q Consensus 599 ~~~~i~vlv~~~P~al~la~~~a~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~ 678 (986)
+.+++++|+++|||+|++++|++++.++++++|+||++|+++++|+++++|+++||||||||+|+|+|.++...++ +++
T Consensus 356 ~~~a~avLVIaCPCALgLAtP~ai~~g~g~aA~~GILiK~g~~LE~l~~v~tvvFDKTGTLT~G~p~v~~v~~~~~-~e~ 434 (713)
T COG2217 356 LYRALAVLVIACPCALGLATPTAILVGIGRAARRGILIKGGEALERLAKVDTVVFDKTGTLTEGKPEVTDVVALDG-DED 434 (713)
T ss_pred HHHHHhheeeeCccHHHhHHHHHHHHHHHHHHhCceEEeChHHHHhhccCCEEEEeCCCCCcCCceEEEEEecCCC-CHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888 889
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhhhcCCCCCCCccccceeeeeCCeeEEEECCEEEEEecHHHHHhcCCCCChh
Q 001981 679 EFCDMATAAEANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDRTVLVGNKRLMMAFHVPVGPE 758 (986)
Q Consensus 679 ~~~~~~~~~e~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~vg~~~~~~~~~~~~~~~ 758 (986)
+++++++++|+.|+||+++||++++++.+. ....+|+.++|+|+++.++|+.+.+|+++++.+++.+.+.
T Consensus 435 ~~L~laAalE~~S~HPiA~AIv~~a~~~~~---------~~~~~~~~i~G~Gv~~~v~g~~v~vG~~~~~~~~~~~~~~- 504 (713)
T COG2217 435 ELLALAAALEQHSEHPLAKAIVKAAAERGL---------PDVEDFEEIPGRGVEAEVDGERVLVGNARLLGEEGIDLPL- 504 (713)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHhcCC---------CCccceeeeccCcEEEEECCEEEEEcCHHHHhhcCCCccc-
Confidence 999999999999999999999998887642 3445599999999999999999999999999999887765
Q ss_pred hHHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecC
Q 001981 759 VDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETD 838 (986)
Q Consensus 759 ~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~ 838 (986)
..+....++.+|+++++++.|++++|++.++|++|++++++|++||++|++++|+|||+..+|+.+|+++||+++++++.
T Consensus 505 ~~~~~~~~~~~G~t~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~Aell 584 (713)
T COG2217 505 LSERIEALESEGKTVVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRAELL 584 (713)
T ss_pred hhhhHHHHHhcCCeEEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhheccCC
Confidence 56667778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHH
Q 001981 839 PVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLN 918 (986)
Q Consensus 839 p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n 918 (986)
|++|.++|++||++|++|+|||||+||+|||++||||||||.|+|+++++||++++++|+..+++++++||+++++||||
T Consensus 585 PedK~~~V~~l~~~g~~VamVGDGINDAPALA~AdVGiAmG~GtDvA~eaADvvL~~~dL~~v~~ai~lsr~t~~~IkqN 664 (713)
T COG2217 585 PEDKAEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMGSGTDVAIEAADVVLMRDDLSAVPEAIDLSRATRRIIKQN 664 (713)
T ss_pred cHHHHHHHHHHHhcCCEEEEEeCCchhHHHHhhcCeeEeecCCcHHHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCcHHHHHHHhhchhHhHhhhhhhcccC
Q 001981 919 YVWALGYNVLAVPIAAGILYPFTGIRLPPWLAGACMAASSLSVLCSSLLLQSY 971 (986)
Q Consensus 919 ~~~~~~~n~~~i~la~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~ 971 (986)
++|+++||+++||+|++++ ++||+|+++|.+||++|++|||||+++
T Consensus 665 l~~A~~yn~~~iplA~~g~-------l~p~~A~~am~~SSv~VvlNaLRL~~~ 710 (713)
T COG2217 665 LFWAFGYNAIAIPLAAGGL-------LTPWIAALAMSGSSVLVVLNALRLLRS 710 (713)
T ss_pred HHHHHHHHHHHHHHHHHhh-------cCHHHHHHHHcccHHHHHHHHHHhhcc
Confidence 9999999999999999653 799999999999999999999999874
No 3
>PRK10671 copA copper exporting ATPase; Provisional
Probab=100.00 E-value=4.4e-125 Score=1166.14 Aligned_cols=801 Identities=36% Similarity=0.588 Sum_probs=693.6
Q ss_pred EEEEeecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCCcccccCCc--------
Q 001981 125 VCRLRIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAGFGADLISSGK-------- 196 (986)
Q Consensus 125 ~~~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~-------- 196 (986)
+.++.|+||+|++|+.+|++++++++||.++.+++. +..+..+ .+.+.+.+.++++||++....+..
T Consensus 4 ~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~---~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~ 78 (834)
T PRK10671 4 TIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT---ASAEALIETIKQAGYDASVSHPKAKPLTESSI 78 (834)
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec---CCHHHHHHHHHhcCCccccccccccccccccc
Confidence 578999999999999999999999999999999994 4455532 467899999999999887532100
Q ss_pred ------------------cccceeeeecCCCCchhHHHHHHhhcCCCCeEEEEEecCCCEEEEEeCCCCCChHHHHHHHH
Q 001981 197 ------------------DVNKVHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLE 258 (986)
Q Consensus 197 ------------------~~~~~~~~v~Gm~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~ 258 (986)
...++++.++||+|++|++.+|+.+.+.+||.++.+|+.+++..+.+ ..+.+++.+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~---~~s~~~I~~~I~ 155 (834)
T PRK10671 79 PSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMG---SASPQDLVQAVE 155 (834)
T ss_pred CchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEc---cCCHHHHHHHHH
Confidence 01246789999999999999999999999999999999999988874 246788888999
Q ss_pred HhcCCCccccccccCCcchhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhHHHHH-H
Q 001981 259 EASHGPNIYHASLYTPPKRRETER--LKETQMYRNRFFISCLFSVPVLLFSMVLPMIPTYGNWLDYKVHNMLTIGMLL-R 335 (986)
Q Consensus 259 ~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~lal~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~l-~ 335 (986)
+.||....... .......... .++.+.+..++...++++++++++.++..++. +. ......|+ .
T Consensus 156 ~~Gy~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~ 222 (834)
T PRK10671 156 KAGYGAEAIED---DAKRRERQQETAQATMKRFRWQAIVALAVGIPVMVWGMIGDNMM-----VT-----ADNRSLWLVI 222 (834)
T ss_pred hcCCCcccccc---ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cC-----ccchhHHHHH
Confidence 99987432110 0000000000 11112222333444444444444332100000 00 00011233 2
Q ss_pred HhhccceeEEecHHHHHHHHHHHhcCCCCcchhHhHHHHHHHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHH
Q 001981 336 WILCTPVQFIVGQRFYVGAYHALRRRSANMDVLVALGTNAAYFYSVYIAVKALTSNTFEGQDFFETSAMLISFILLGKYL 415 (986)
Q Consensus 336 ~~la~~v~~~~g~~~~~~a~~~l~~~~~~md~Lv~l~~~~a~~~s~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~g~~l 415 (986)
+++++|++|+.|+|||++||++|+++++|||+|+++|++++|+||+|..+.........++.||++++++++|+++|+|+
T Consensus 223 ~~~~~~~~~~~g~~~~~~a~~~l~~~~~~md~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~l 302 (834)
T PRK10671 223 GLITLAVMVFAGGHFYRSAWKSLLNGSATMDTLVALGTGAAWLYSMSVNLWPQWFPMEARHLYYEASAMIIGLINLGHML 302 (834)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999998776532221112356999999999999999999
Q ss_pred HHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCcccccEEEEeccceeeccccccC
Q 001981 416 EVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVVTDGQSYVNESMITGE 495 (986)
Q Consensus 416 e~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaDg~vl~G~~~Vdes~lTGE 495 (986)
|.+++.|+++.+++|.++.|++++++ ||| .+++|++++|++||+|+|++||+||+||+|++|++.||||+||||
T Consensus 303 e~~~~~~~~~~~~~L~~l~p~~a~~~---~~~---~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~~~vdeS~lTGE 376 (834)
T PRK10671 303 EARARQRSSKALEKLLDLTPPTARVV---TDE---GEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGE 376 (834)
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEE---eCC---cEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEceEEEeehhhcCC
Confidence 99999999999999999999999999 778 788999999999999999999999999999999999999999999
Q ss_pred CcceecCCCCceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001981 496 AKPIAKGPGDKVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWF 575 (986)
Q Consensus 496 s~pv~k~~g~~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 575 (986)
|.|+.|++||.||+||+|.+|.+.++|+++|.+|.++||.+++++++.+|+|+|+++|+++++|+|++++++++++++|+
T Consensus 377 s~pv~k~~gd~V~aGt~~~~G~~~~~v~~~g~~t~l~~i~~lv~~a~~~k~~~~~~~d~~a~~~v~~v~~~a~~~~~~~~ 456 (834)
T PRK10671 377 PIPQQKGEGDSVHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWY 456 (834)
T ss_pred CCCEecCCCCEEEecceecceeEEEEEEEEcCcChHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HhhccCCCCCcccccchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHHHHHhhcCeEecCchHHhhhcCCcEEEecC
Q 001981 576 IPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDK 655 (986)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDK 655 (986)
+.+. ...|..++.+++++|+++|||+|++++|+++..++.+++|+||++|+++++|+++++|++||||
T Consensus 457 ~~~~------------~~~~~~~~~~a~~vlv~acPcaL~la~p~a~~~~~~~~a~~gilvk~~~~le~l~~v~~v~fDK 524 (834)
T PRK10671 457 FFGP------------APQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFDK 524 (834)
T ss_pred HhCC------------chHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHCCeEEecHHHHHhhcCCCEEEEcC
Confidence 7531 0135567889999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCccEEEEEEecCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhcCCCCCCCccccceeeeeCCeeEEEE
Q 001981 656 TGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAEANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKV 735 (986)
Q Consensus 656 TGTLT~g~~~v~~~~~~~~~~~~~~~~~~~~~e~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~ 735 (986)
|||||+|+|+|.++...++.+.++++.+++++|+.++||+++||+++++.. ....+.+++.++|+|+.+.+
T Consensus 525 TGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~e~~s~hp~a~Ai~~~~~~~---------~~~~~~~~~~~~g~Gv~~~~ 595 (834)
T PRK10671 525 TGTLTEGKPQVVAVKTFNGVDEAQALRLAAALEQGSSHPLARAILDKAGDM---------TLPQVNGFRTLRGLGVSGEA 595 (834)
T ss_pred CCccccCceEEEEEEccCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHhhC---------CCCCcccceEecceEEEEEE
Confidence 999999999999998888888899999999999999999999999987532 22456788999999999999
Q ss_pred CCEEEEEecHHHHHhcCCCCChhhHHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcC
Q 001981 736 GDRTVLVGNKRLMMAFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTG 815 (986)
Q Consensus 736 ~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tg 815 (986)
+|..+.+|+++++.+.++.. +++....++++..|.+++++++|++++|++.+.|++||+++++|++|+++|++++|+||
T Consensus 596 ~g~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~L~~~gi~v~~~Tg 674 (834)
T PRK10671 596 EGHALLLGNQALLNEQQVDT-KALEAEITAQASQGATPVLLAVDGKAAALLAIRDPLRSDSVAALQRLHKAGYRLVMLTG 674 (834)
T ss_pred CCEEEEEeCHHHHHHcCCCh-HHHHHHHHHHHhCCCeEEEEEECCEEEEEEEccCcchhhHHHHHHHHHHCCCeEEEEcC
Confidence 99999999999998776643 33555566778889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCceEEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeC
Q 001981 816 DNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIK 895 (986)
Q Consensus 816 d~~~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~ 895 (986)
|+..+++.+++++||+++++++.|++|.++++.++.+++.|+|||||.||++|+++||+||+||++++.++++||+++++
T Consensus 675 d~~~~a~~ia~~lgi~~~~~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~Agvgia~g~g~~~a~~~ad~vl~~ 754 (834)
T PRK10671 675 DNPTTANAIAKEAGIDEVIAGVLPDGKAEAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGSDVAIETAAITLMR 754 (834)
T ss_pred CCHHHHHHHHHHcCCCEEEeCCCHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHHHhCCeeEEecCCCHHHHHhCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcHHHHHHHhhchhHhHhhhhhhcccCCCC
Q 001981 896 SSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAVPIAAGILYPFTGIRLPPWLAGACMAASSLSVLCSSLLLQSYKKP 974 (986)
Q Consensus 896 ~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~la~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~~~~ 974 (986)
+++.+|++++++||+++++|+||++|+++||++++|+|+|+|+|++|+.|+||+|+++|.+||++|++||+||++|++|
T Consensus 755 ~~~~~i~~~i~l~r~~~~~i~~Nl~~a~~yn~~~i~~a~g~~~p~~g~~l~p~~a~~~m~~ss~~vv~nslrl~~~~~~ 833 (834)
T PRK10671 755 HSLMGVADALAISRATLRNMKQNLLGAFIYNSLGIPIAAGILWPFTGTLLNPVVAGAAMALSSITVVSNANRLLRFKPK 833 (834)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhcccCHHHHHHHhcccceeehhhhHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999988978999999999999999999999999877754
No 4
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=100.00 E-value=2.3e-112 Score=1030.26 Aligned_cols=688 Identities=29% Similarity=0.427 Sum_probs=601.4
Q ss_pred ccceeeeecCCCCchhHHHHHHhhcCCCCeEEEEEecCCCEEEEEeCCCCCChHHHHHHHHHhcCCCccccccccCCcch
Q 001981 198 VNKVHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEEASHGPNIYHASLYTPPKR 277 (986)
Q Consensus 198 ~~~~~~~v~Gm~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~~ 277 (986)
..+.++.++||+|++|++.+|+.+.+.+||.++++|+.++++.+.|++.. . +++.+.+++.||...... . .
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~-~-~~I~~aI~~~Gy~a~~~~-----~--~ 122 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI-R-AQVESAVQKAGFSLRDEQ-----A--A 122 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc-h-HHHHHHHHhccccccccc-----c--h
Confidence 34678999999999999999999999999999999999999999998763 3 778888899998642110 0 0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHhhccceeEEecHHHHHHHHHH
Q 001981 278 RETERLKETQMYRNRFFISCLFSVPVLLFSMVLPMIPTYGNWLDYKVHNMLTIGMLLRWILCTPVQFIVGQRFYVGAYHA 357 (986)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~l~lal~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~v~~~~g~~~~~~a~~~ 357 (986)
... .+.+.++ ..+. +++...++++++.+.. . .. ...|+.+++++ ++.|+|||++||++
T Consensus 123 -~~~--~~~~~~~-~~~~-~~~~~~~~~~~~~~~~-------~----~~---~~~~~~~~~~~---~~~~~~~~~~a~~~ 180 (741)
T PRK11033 123 -AAA--PESRLKS-ENLP-LITLAVMMAISWGLEQ-------F----NH---PFGQLAFIATT---LVGLYPIARKALRL 180 (741)
T ss_pred -hhh--HHHHHHH-HHHH-HHHHHHHHHHHHHHhh-------h----hh---HHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 000 1111111 1111 1111122222111100 0 00 01234444443 56889999999999
Q ss_pred HhcCCC-CcchhHhHHHHHHHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCC
Q 001981 358 LRRRSA-NMDVLVALGTNAAYFYSVYIAVKALTSNTFEGQDFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPD 436 (986)
Q Consensus 358 l~~~~~-~md~Lv~l~~~~a~~~s~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~ 436 (986)
+|++++ |||+|+++++.++++++ .| +.++++++++++|+++|.+++.|+++.+++|+++.|+
T Consensus 181 l~~~~~~~~~~L~~~a~~~a~~~~----------------~~-~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~ 243 (741)
T PRK11033 181 IRSGSPFAIETLMSVAAIGALFIG----------------AT-AEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPE 243 (741)
T ss_pred HHcCCCCCccHHHHHHHHHHHHHc----------------ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999885 99999999999998765 23 4678899999999999999999999999999999999
Q ss_pred eEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCcccccEEEEeccceeeccccccCCcceecCCCCceeeeeeecCc
Q 001981 437 TAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVVTDGQSYVNESMITGEAKPIAKGPGDKVIGGTMNENG 516 (986)
Q Consensus 437 ~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaDg~vl~G~~~Vdes~lTGEs~pv~k~~g~~v~aGs~~~~g 516 (986)
+++++ ||| ++++|++++|+|||+|+|++||+||+||+|++|++.||||+|||||.|+.|++||.||+||++.+|
T Consensus 244 ~a~vi---r~g---~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~~~vdes~lTGEs~Pv~k~~Gd~V~aGt~~~~G 317 (741)
T PRK11033 244 TATRL---RDG---EREEVAIADLRPGDVIEVAAGGRLPADGKLLSPFASFDESALTGESIPVERATGEKVPAGATSVDR 317 (741)
T ss_pred EEEEE---ECC---EEEEEEHHHCCCCCEEEECCCCEEecceEEEECcEEeecccccCCCCCEecCCCCeeccCCEEcCc
Confidence 99999 788 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeCCchHHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHH
Q 001981 517 CLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFE 596 (986)
Q Consensus 517 ~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (986)
.++++|+++|.+|.++||.+++++++.+|+|+|+++|+++++|+|+++++++++|++|++... .+|.
T Consensus 318 ~~~i~V~~~g~~s~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~~~~v~~~a~~~~~~~~~~~~-------------~~~~ 384 (741)
T PRK11033 318 LVTLEVLSEPGASAIDRILHLIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPLLFA-------------APWQ 384 (741)
T ss_pred eEEEEEEeccccCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------------CCHH
Confidence 999999999999999999999999999999999999999999999999999999998854321 2456
Q ss_pred HHHHHHhhhhhhhcccchhhhHHHHHHHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCCCC
Q 001981 597 LALQFGISVLVVACPCALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFS 676 (986)
Q Consensus 597 ~~~~~~i~vlv~~~P~al~la~~~a~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~~ 676 (986)
.++.+++++|+++|||+|++++|+++..++.+++|+||++|+++++|+++++|+||||||||||+|+|+|.++..+++++
T Consensus 385 ~~i~~a~svlviacPcaL~latP~a~~~~l~~aar~gilik~~~alE~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~~~ 464 (741)
T PRK11033 385 EWIYRGLTLLLIGCPCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTTVAFDKTGTLTEGKPQVTDIHPATGIS 464 (741)
T ss_pred HHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHCCeEEcCcHHHHHhhCCCEEEEeCCCCCcCCceEEEEEEecCCCC
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhcCCCCCCCccccceeeeeCCeeEEEECCEEEEEecHHHHHhcCCCCC
Q 001981 677 MEEFCDMATAAEANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDRTVLVGNKRLMMAFHVPVG 756 (986)
Q Consensus 677 ~~~~~~~~~~~e~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~vg~~~~~~~~~~~~~ 756 (986)
.++++.+++++|..++||+++||++++++.+. ..+...+++.++|+|+.+.++|..+.+|+++++.+ .+
T Consensus 465 ~~~~l~~aa~~e~~s~hPia~Ai~~~a~~~~~-------~~~~~~~~~~~~g~Gv~~~~~g~~~~ig~~~~~~~----~~ 533 (741)
T PRK11033 465 ESELLALAAAVEQGSTHPLAQAIVREAQVRGL-------AIPEAESQRALAGSGIEGQVNGERVLICAPGKLPP----LA 533 (741)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-------CCCCCcceEEEeeEEEEEEECCEEEEEecchhhhh----cc
Confidence 99999999999999999999999999887654 23456678899999999999999999999999865 23
Q ss_pred hhhHHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEe
Q 001981 757 PEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAE 836 (986)
Q Consensus 757 ~~~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~ 836 (986)
++......+++.+|++++++++|++++|++.++|++|++++++|++||++|++++|+|||+..+++.+|+++||+ ++++
T Consensus 534 ~~~~~~~~~~~~~g~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~-~~~~ 612 (741)
T PRK11033 534 DAFAGQINELESAGKTVVLVLRNDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGID-FRAG 612 (741)
T ss_pred HHHHHHHHHHHhCCCEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC-eecC
Confidence 445555667888999999999999999999999999999999999999999999999999999999999999996 7788
Q ss_pred cCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHH
Q 001981 837 TDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIR 916 (986)
Q Consensus 837 ~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~ 916 (986)
+.|++|.++|+.+++. +.|+|||||+||+|||++|||||+||++++.++++||++++.+++..|++++++||+++++||
T Consensus 613 ~~p~~K~~~v~~l~~~-~~v~mvGDgiNDapAl~~A~vgia~g~~~~~a~~~adivl~~~~l~~l~~~i~~sr~~~~~I~ 691 (741)
T PRK11033 613 LLPEDKVKAVTELNQH-APLAMVGDGINDAPAMKAASIGIAMGSGTDVALETADAALTHNRLRGLAQMIELSRATHANIR 691 (741)
T ss_pred CCHHHHHHHHHHHhcC-CCEEEEECCHHhHHHHHhCCeeEEecCCCHHHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999965 579999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCcHHHHHHHhhchhHhHhhhhhhcccCC
Q 001981 917 LNYVWALGYNVLAVPIAAGILYPFTGIRLPPWLAGACMAASSLSVLCSSLLLQSYK 972 (986)
Q Consensus 917 ~n~~~~~~~n~~~i~la~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~~ 972 (986)
||+.|+++||++++|+|+.++ ++||+|+++|.+||++|++||+|+.+||
T Consensus 692 ~nl~~a~~~n~~~i~~a~~g~-------~~~~~a~~~~~~ss~~v~~Nslrl~~~~ 740 (741)
T PRK11033 692 QNITIALGLKAIFLVTTLLGI-------TGLWLAVLADSGATALVTANALRLLRKR 740 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHcChHHHHHHHHHhhcccC
Confidence 999999999999999997322 6899999999999999999999998765
No 5
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=1.3e-101 Score=912.89 Aligned_cols=562 Identities=53% Similarity=0.839 Sum_probs=525.9
Q ss_pred ecHHHHHHHHHHHhcCCCCcchhHhHHHHHHHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 001981 346 VGQRFYVGAYHALRRRSANMDVLVALGTNAAYFYSVYIAVKALTSNTFEGQDFFETSAMLISFILLGKYLEVVAKGKTSD 425 (986)
Q Consensus 346 ~g~~~~~~a~~~l~~~~~~md~Lv~l~~~~a~~~s~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~g~~le~~~~~k~~~ 425 (986)
+|+|||++||++++++++|||+|+++|++++|+||.|.++.+....+...+.||++++++++++++|+|+|.++++|+++
T Consensus 1 ~g~~~~~~a~~~l~~~~~~md~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~a~~ 80 (562)
T TIGR01511 1 AGRPFYKSAWKALRHKAPNMDTLIALGTTVAYGYSLVALLANQVLTGLHVHTFFDASAMLITFILLGRWLEMLAKGRASD 80 (562)
T ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999998886432222233579999999999999999999999999999
Q ss_pred HHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCcccccEEEEeccceeeccccccCCcceecCCCC
Q 001981 426 ALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVVTDGQSYVNESMITGEAKPIAKGPGD 505 (986)
Q Consensus 426 ~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaDg~vl~G~~~Vdes~lTGEs~pv~k~~g~ 505 (986)
.+++|.++.|+++++++ ++| .+++|++++|++||+|+|++||+|||||+|++|++.||||+|||||.|+.|++||
T Consensus 81 ~~~~L~~~~p~~a~~~~--~~~---~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~gd 155 (562)
T TIGR01511 81 ALSKLAKLQPSTATLLT--KDG---SIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGESEVDESLVTGESLPVPKKVGD 155 (562)
T ss_pred HHHHHHhcCCCEEEEEE--CCC---eEEEEEHHHCCCCCEEEECCCCEecCceEEEECceEEehHhhcCCCCcEEcCCCC
Confidence 99999999999999983 346 6789999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 001981 506 KVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPK 585 (986)
Q Consensus 506 ~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 585 (986)
.||+||+|.+|.+.++|+++|.+|.++||.+++++++.+|+|+|+++|+++++|+|++++++++++++|.
T Consensus 156 ~V~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~~~~~~---------- 225 (562)
T TIGR01511 156 PVIAGTVNGTGSLVVRATATGEDTTLAQIVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALITFVIWL---------- 225 (562)
T ss_pred EEEeeeEECCceEEEEEEEecCCChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999888764
Q ss_pred cccccchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccE
Q 001981 586 HWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPE 665 (986)
Q Consensus 586 ~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~ 665 (986)
.++.+++++|+++|||+|++++|+++..++.+++++||++|+++++|+|+++|++|||||||||+|+|+
T Consensus 226 -----------~~~~~~~svlvvacPcaL~la~p~a~~~~~~~aa~~gIlik~~~~lE~l~~v~~i~fDKTGTLT~g~~~ 294 (562)
T TIGR01511 226 -----------FALEFAVTVLIIACPCALGLATPTVIAVATGLAAKNGVLIKDGDALERAANIDTVVFDKTGTLTQGKPT 294 (562)
T ss_pred -----------HHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHCCeEEcChHHHHHhhCCCEEEECCCCCCcCCCEE
Confidence 256789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhcCCCCCCCccccceeeeeCCeeEEEECCEEEEEecH
Q 001981 666 VVSAVLFSHFSMEEFCDMATAAEANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDRTVLVGNK 745 (986)
Q Consensus 666 v~~~~~~~~~~~~~~~~~~~~~e~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~vg~~ 745 (986)
+.++.+.++.+.++++.+++++|++++||+++||++++++.+. ......+++.++|+|+.+.+++.++.+|++
T Consensus 295 v~~i~~~~~~~~~~~l~~aa~~e~~s~HPia~Ai~~~~~~~~~-------~~~~~~~~~~~~g~Gi~~~~~g~~~~iG~~ 367 (562)
T TIGR01511 295 VTDVHVFGDRDRTELLALAAALEAGSEHPLAKAIVSYAKEKGI-------TLVEVSDFKAIPGIGVEGTVEGTKIQLGNE 367 (562)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC-------CcCCCCCeEEECCceEEEEECCEEEEEECH
Confidence 9999988888889999999999999999999999999977653 223466888999999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 001981 746 RLMMAFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIA 825 (986)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a 825 (986)
+++.+++...++ ...+|.++++++.|++++|.+.++|++||+++++|++||++|++++|+|||+...++.++
T Consensus 368 ~~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia 439 (562)
T TIGR01511 368 KLLGENAIKIDG--------KAEQGSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVA 439 (562)
T ss_pred HHHHhCCCCCCh--------hhhCCCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHH
Confidence 999877665432 346789999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHH
Q 001981 826 KEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAI 905 (986)
Q Consensus 826 ~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i 905 (986)
+++||+ +|+++.|++|.++++.+++++++|+|||||.||++|+++||+||+||++++.+++.||++++++++..+++++
T Consensus 440 ~~lgi~-~~~~~~p~~K~~~v~~l~~~~~~v~~VGDg~nD~~al~~A~vgia~g~g~~~a~~~Advvl~~~~l~~l~~~i 518 (562)
T TIGR01511 440 KELGIN-VRAEVLPDDKAALIKELQEKGRVVAMVGDGINDAPALAQADVGIAIGAGTDVAIEAADVVLMRNDLNDVATAI 518 (562)
T ss_pred HHcCCc-EEccCChHHHHHHHHHHHHcCCEEEEEeCCCccHHHHhhCCEEEEeCCcCHHHHhhCCEEEeCCCHHHHHHHH
Confidence 999997 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcHHHH
Q 001981 906 DLSRKTISRIRLNYVWALGYNVLAVPIAAGILYPFTGIRLPPWLA 950 (986)
Q Consensus 906 ~~~r~~~~~i~~n~~~~~~~n~~~i~la~g~~~~~~g~~l~p~~a 950 (986)
++||+++++|+||+.|++.||++++|+|+|++.|+ |+.++|++|
T Consensus 519 ~lsr~~~~~i~qn~~~a~~~n~~~i~la~~~~~~~-g~~~~p~~a 562 (562)
T TIGR01511 519 DLSRKTLRRIKQNLLWAFGYNVIAIPIAAGVLYPI-GILLSPAVA 562 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccCCCcC
Confidence 99999999999999999999999999999988888 888999875
No 6
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=100.00 E-value=1.2e-92 Score=840.22 Aligned_cols=549 Identities=50% Similarity=0.750 Sum_probs=509.1
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEec
Q 001981 365 MDVLVALGTNAAYFYSVYIAVKALTSNTFEGQDFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLD 444 (986)
Q Consensus 365 md~Lv~l~~~~a~~~s~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~ 444 (986)
||+|++++++.+|++|. |..++++++++++++++|.++++|+++.+++|.++.|++++++
T Consensus 1 ~d~l~~~~~~~~~~~~~-----------------~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~--- 60 (556)
T TIGR01525 1 MDLLMALATIAAYAMGL-----------------VLEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVL--- 60 (556)
T ss_pred CcHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE---
Confidence 89999999999998872 2357899999999999999999999999999999999999999
Q ss_pred CC-CCeeeEEEeeCCCcCCCcEEEEcCCCcccccEEEEeccceeeccccccCCcceecCCCCceeeeeeecCceEEEEEE
Q 001981 445 GE-GNVISEMDINTQLMQKNDIIKILPGEKVPVDGVVTDGQSYVNESMITGEAKPIAKGPGDKVIGGTMNENGCLQVKAT 523 (986)
Q Consensus 445 r~-g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaDg~vl~G~~~Vdes~lTGEs~pv~k~~g~~v~aGs~~~~g~~~~~v~ 523 (986)
|| | ++++|++++|+|||+|+|++||+|||||+|++|++.||||+|||||.|+.|++|+.||+||.+.+|.++++|+
T Consensus 61 r~~g---~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~g~~~~~v~ 137 (556)
T TIGR01525 61 QGDG---SEEEVPVEELQVGDIVIVRPGERIPVDGVVISGESEVDESALTGESMPVEKKEGDEVFAGTINGDGSLTIRVT 137 (556)
T ss_pred ECCC---eEEEEEHHHCCCCCEEEECCCCEeccceEEEecceEEeehhccCCCCCEecCCcCEEeeceEECCceEEEEEE
Confidence 66 6 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCchHHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHh
Q 001981 524 HVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGI 603 (986)
Q Consensus 524 ~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 603 (986)
++|.+|.++++.+++++++.+++|+++.+++++++|+++++++++++|++|++.+. + .++.+++
T Consensus 138 ~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~a~~~~~~~~~~~~--------------~--~~~~~~~ 201 (556)
T TIGR01525 138 KLGEDSTLAQIVKLVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGA--------------L--GALYRAL 201 (556)
T ss_pred EecccCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------c--hHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876431 1 5788999
Q ss_pred hhhhhhcccchhhhHHHHHHHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCCCC--HHHHH
Q 001981 604 SVLVVACPCALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFS--MEEFC 681 (986)
Q Consensus 604 ~vlv~~~P~al~la~~~a~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~~--~~~~~ 681 (986)
++++++|||+|++++|+++..++.+++++||++|+++++|+++++|++|||||||||+|+|++.++...++.+ .++++
T Consensus 202 ~vlv~~~P~al~l~~~~~~~~~~~~~~~~gilvk~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~l 281 (556)
T TIGR01525 202 AVLVVACPCALGLATPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVDVEPLDDASISEEELL 281 (556)
T ss_pred HHHhhccccchhehhHHHHHHHHHHHHHCCceecCchHHHHhhcCCEEEEeCCCCCcCCceEEEEEEecCCCCccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877665 78899
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhhhcCCCCCCCcccc-ceeeeeCCeeEEEECC-EEEEEecHHHHHhcCCCCChhh
Q 001981 682 DMATAAEANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAK-DFEVHTGAGVSGKVGD-RTVLVGNKRLMMAFHVPVGPEV 759 (986)
Q Consensus 682 ~~~~~~e~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~g~~~~~~~-~~~~vg~~~~~~~~~~~~~~~~ 759 (986)
.+++++|+.+.||+++||++++++.+... .. . +++.++|+|+++.++| .++.+|+++++.......+ +.
T Consensus 282 ~~a~~~e~~~~hp~~~Ai~~~~~~~~~~~-------~~-~~~~~~~~~~gi~~~~~g~~~~~lg~~~~~~~~~~~~~-~~ 352 (556)
T TIGR01525 282 ALAAALEQSSSHPLARAIVRYAKKRGLEL-------PK-QEDVEEVPGKGVEATVDGQEEVRIGNPRLLELAAEPIS-AS 352 (556)
T ss_pred HHHHHHhccCCChHHHHHHHHHHhcCCCc-------cc-ccCeeEecCCeEEEEECCeeEEEEecHHHHhhcCCCch-hh
Confidence 99999999999999999999998765321 11 2 6677889999999999 8999999999844333322 23
Q ss_pred HHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHHHHcCCceEEEecC
Q 001981 760 DDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSME-ISSIMVTGDNWATANAIAKEVGIGKVFAETD 838 (986)
Q Consensus 760 ~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~g-i~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~ 838 (986)
......+..+|++++++++|++++|.+.++|+++|+++++|++|+++| ++++|+|||+..+++.+++++|++++|+++.
T Consensus 353 ~~~~~~~~~~g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~~~~ 432 (556)
T TIGR01525 353 PDLLNEGESQGKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHAELL 432 (556)
T ss_pred HHHHHHHhhCCcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeeccCC
Confidence 344556678899999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred cccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHH
Q 001981 839 PVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLN 918 (986)
Q Consensus 839 p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n 918 (986)
|++|.++++.++..+++|+|||||.||.+|+++||+||++|++++.+++.||+++.++++..+++++++||+++++|++|
T Consensus 433 p~~K~~~v~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~~~~Ad~vi~~~~~~~l~~~i~~~r~~~~~i~~n 512 (556)
T TIGR01525 433 PEDKLAIVKELQEEGGVVAMVGDGINDAPALAAADVGIAMGAGSDVAIEAADIVLLNDDLSSLPTAIDLSRKTRRIIKQN 512 (556)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECChhHHHHHhhCCEeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCcHH-HHHHHhhchhHhHhhhhhhc
Q 001981 919 YVWALGYNVLAVPIAAGILYPFTGIRLPPW-LAGACMAASSLSVLCSSLLL 968 (986)
Q Consensus 919 ~~~~~~~n~~~i~la~g~~~~~~g~~l~p~-~a~~~m~~ss~~v~~~s~~l 968 (986)
+.|+++||++++|+|++++ ++|| +|+++|.+||++|++||+|+
T Consensus 513 l~~a~~~N~~~i~~a~~g~-------~~p~~~aa~~m~~ss~~v~lns~r~ 556 (556)
T TIGR01525 513 LAWALGYNLVAIPLAAGGL-------LPLWLLAVLLHEGSTVLVVLNSLRL 556 (556)
T ss_pred HHHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHhchHHHHHHHhhcC
Confidence 9999999999999998543 6896 99999999999999999985
No 7
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=100.00 E-value=5.2e-93 Score=837.42 Aligned_cols=533 Identities=41% Similarity=0.614 Sum_probs=499.4
Q ss_pred cchhHhHHHHHHHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEec
Q 001981 365 MDVLVALGTNAAYFYSVYIAVKALTSNTFEGQDFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLD 444 (986)
Q Consensus 365 md~Lv~l~~~~a~~~s~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~ 444 (986)
||+|+++++..+|+++ .||+. ++++++++++++++.++++|+.+.+++|.++.|++++++
T Consensus 1 ~~~l~~~a~~~~~~~~----------------~~~~~-~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~--- 60 (536)
T TIGR01512 1 VDLLMALAALGAVAIG----------------EYLEG-ALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVL--- 60 (536)
T ss_pred CcHHHHHHHHHHHHHh----------------hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE---
Confidence 7999999999998776 46765 778889999999999999999999999999999999999
Q ss_pred CCCCeeeEEEeeCCCcCCCcEEEEcCCCcccccEEEEeccceeeccccccCCcceecCCCCceeeeeeecCceEEEEEEE
Q 001981 445 GEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVVTDGQSYVNESMITGEAKPIAKGPGDKVIGGTMNENGCLQVKATH 524 (986)
Q Consensus 445 r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaDg~vl~G~~~Vdes~lTGEs~pv~k~~g~~v~aGs~~~~g~~~~~v~~ 524 (986)
||| ++++|++++|+|||+|.|++||+|||||+|++|++.||||+|||||.|+.|++||.||+||.+.+|.++++|++
T Consensus 61 r~g---~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~G~~~~~V~~ 137 (536)
T TIGR01512 61 RGG---SLEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTSTVDESALTGESVPVEKAPGDEVFAGAINLDGVLTIVVTK 137 (536)
T ss_pred ECC---EEEEEEHHHCCCCCEEEEcCCCEeecceEEEeCcEEEEecccCCCCCcEEeCCCCEEEeeeEECCceEEEEEEE
Confidence 788 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCchHHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhh
Q 001981 525 VGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGIS 604 (986)
Q Consensus 525 ~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 604 (986)
+|.+|.++|+.+++++++.+++|+|+.+++++++|+|+++++++++|++|++.. .+..++.++++
T Consensus 138 ~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~s 202 (536)
T TIGR01512 138 LPADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLLK---------------RWPFWVYRALV 202 (536)
T ss_pred eccccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------ccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988876532 11237888999
Q ss_pred hhhhhcccchhhhHHHHHHHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCCCCHHHHHHHH
Q 001981 605 VLVVACPCALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMA 684 (986)
Q Consensus 605 vlv~~~P~al~la~~~a~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~~~~~ 684 (986)
+++++|||+|++++|+++..++.+++++||++|+++++|+++++|++|||||||||+|+|++.++.+ .+++.++
T Consensus 203 vlv~~~P~aL~la~~~~~~~~~~~~~k~gilik~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~------~~~l~~a 276 (536)
T TIGR01512 203 LLVVASPCALVISAPAAYLSAISAAARHGILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVVP------AEVLRLA 276 (536)
T ss_pred HHhhcCccccccchHHHHHHHHHHHHHCCeEEcCcHHHHhhcCCCEEEECCCCCCcCCceEEEEeeH------HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999865 3789999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhhhhcCCCCCCCccccceeeeeCCeeEEEECCEEEEEecHHHHHhcCCCCChhhHHHHH
Q 001981 685 TAAEANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGDRTVLVGNKRLMMAFHVPVGPEVDDYMM 764 (986)
Q Consensus 685 ~~~e~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~ 764 (986)
+++|..+.||+++||++++++.+ ...+++..+|+|+.+.++|.++.+|+++++.+.+..
T Consensus 277 ~~~e~~~~hp~~~Ai~~~~~~~~-----------~~~~~~~~~g~gi~~~~~g~~~~ig~~~~~~~~~~~---------- 335 (536)
T TIGR01512 277 AAAEQASSHPLARAIVDYARKRE-----------NVESVEEVPGEGVRAVVDGGEVRIGNPRSLEAAVGA---------- 335 (536)
T ss_pred HHHhccCCCcHHHHHHHHHHhcC-----------CCcceEEecCCeEEEEECCeEEEEcCHHHHhhcCCc----------
Confidence 99999999999999999987542 345677889999999999999999999998776542
Q ss_pred HHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHcCCceEEEecCcccHH
Q 001981 765 KNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEI-SSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKA 843 (986)
Q Consensus 765 ~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi-~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~ 843 (986)
.+..+|.+++++++|+.+.|.+.++|+++|+++++|++|+++|+ +++|+|||+..+++.+++++|++++|+++.|++|.
T Consensus 336 ~~~~~~~~~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~~p~~K~ 415 (536)
T TIGR01512 336 RPESAGKTIVHVARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAELLPEDKL 415 (536)
T ss_pred chhhCCCeEEEEEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhccCcHHHH
Confidence 34556889999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEec-CCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001981 844 NKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIG-AGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWA 922 (986)
Q Consensus 844 ~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~ 922 (986)
++++.++.+++.|+|||||.||++|+++||+||++| ++++.+++.||+++.++++..+.+++++||++++++++|+.|+
T Consensus 416 ~~i~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~~~~~ad~vl~~~~l~~l~~~i~~~r~~~~~i~~nl~~a 495 (536)
T TIGR01512 416 EIVKELREKYGPVAMVGDGINDAPALAAADVGIAMGASGSDVAIETADVVLLNDDLSRLPQAIRLARRTRRIVKQNVVIA 495 (536)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHHHhCCEEEEeCCCccHHHHHhCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCcHHHHHHHhhchhHhHhhhhhhcc
Q 001981 923 LGYNVLAVPIAAGILYPFTGIRLPPWLAGACMAASSLSVLCSSLLLQ 969 (986)
Q Consensus 923 ~~~n~~~i~la~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~ 969 (986)
++||++++|+|+.+ .++||+|+++|.+||++|++||+|++
T Consensus 496 ~~~n~~~i~~a~~G-------~~~p~~aa~~m~~ss~~v~~ns~r~~ 535 (536)
T TIGR01512 496 LGIILLLILLALFG-------VLPLWLAVLGHEGSTVLVILNALRLL 535 (536)
T ss_pred HHHHHHHHHHHHHh-------hccHHHHHHHHcChHHHHHHHHHhhc
Confidence 99999999999842 27999999999999999999999986
No 8
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=2e-87 Score=815.71 Aligned_cols=527 Identities=25% Similarity=0.384 Sum_probs=460.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCccccc
Q 001981 398 FFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVD 477 (986)
Q Consensus 398 ~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaD 477 (986)
|.+ +++++++++++..++.++++|+++++++|.++.|.+++|+ ||| ++++|++++|+|||+|.|++||+||||
T Consensus 55 ~~~-~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~---Rdg---~~~~I~~~~Lv~GDiV~l~~Gd~IPaD 127 (755)
T TIGR01647 55 WVD-FVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVL---RDG---KWQEIPASELVPGDVVRLKIGDIVPAD 127 (755)
T ss_pred hhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE---ECC---EEEEEEhhhCcCCCEEEECCCCEEece
Confidence 443 4566677778888888999999999999999999999999 899 899999999999999999999999999
Q ss_pred EEEEecc-ceeeccccccCCcceecCCCCceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 001981 478 GVVTDGQ-SYVNESMITGEAKPIAKGPGDKVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQIS 556 (986)
Q Consensus 478 g~vl~G~-~~Vdes~lTGEs~pv~k~~g~~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~ 556 (986)
|+|++|+ ..||||+|||||.|+.|.+||.+|+||.+.+|.++++|+++|.+|.+|+|.+++++++.+++|+|+.+++++
T Consensus 128 g~vi~g~~~~VDeS~LTGES~PV~K~~~~~v~aGT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~~~~~~~~lq~~~~~i~ 207 (755)
T TIGR01647 128 CRLFEGDYIQVDQAALTGESLPVTKKTGDIAYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETGSGHLQKILSKIG 207 (755)
T ss_pred EEEEecCceEEEcccccCCccceEeccCCeeeccCEEEccEEEEEEEEcCCccHHHHHHHHhhccCCCCCcHHHHHHHHH
Confidence 9999998 799999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHHHHHhhcCeEe
Q 001981 557 RFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKGASLGVLI 636 (986)
Q Consensus 557 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~~~~~~~gilv 636 (986)
.++++++++++++.+++|++.. ..+|..++.+++++++++|||+|++++|+++..+..+++|+|+++
T Consensus 208 ~~~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~gilv 274 (755)
T TIGR01647 208 LFLIVLIGVLVLIELVVLFFGR-------------GESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIV 274 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCCeEE
Confidence 9999999999988888876521 124677889999999999999999999999999999999999999
Q ss_pred cCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCC-CCHHHHHHHHHHH-HhcCCChHHHHHHHHHHHhhhhcCCCC
Q 001981 637 KGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSH-FSMEEFCDMATAA-EANSEHPIAKAVVEHAKKLRQKLGSPT 714 (986)
Q Consensus 637 k~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~-~~~~~~~~~~~~~-e~~s~hp~~~ai~~~~~~~~~~~~~~~ 714 (986)
|+++++|+||++|+||||||||||+|+|++.+++..++ ++.++++.+++.+ +..++||+++|+++++.+.+......
T Consensus 275 k~l~alE~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~l~~a~~~~~~~~~~pi~~Ai~~~~~~~~~~~~~~- 353 (755)
T TIGR01647 275 TRLTAIEELAGMDILCSDKTGTLTLNKLSIDEILPFFNGFDKDDVLLYAALASREEDQDAIDTAVLGSAKDLKEARDGY- 353 (755)
T ss_pred cccHHHHhccCCcEEEecCCCccccCceEEEEEEecCCCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhHHHHhcC-
Confidence 99999999999999999999999999999999987654 7788888888766 47789999999999887643211000
Q ss_pred CCCccccceeeeeCCeeEEEEC----CEE--EEEecHHHHHhcCCC---CChhhHHHHHHHHhccCcEEEEEE-C----C
Q 001981 715 EHASEAKDFEVHTGAGVSGKVG----DRT--VLVGNKRLMMAFHVP---VGPEVDDYMMKNEQLARTCVLVAI-D----G 780 (986)
Q Consensus 715 ~~~~~~~~~~~~~g~g~~~~~~----~~~--~~vg~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~i~va~-~----~ 780 (986)
......+|+. .++++++.+. ++. +.+|+++.+.+.+.. .++++.+..+++..+|++++++|+ + .
T Consensus 354 -~~~~~~pf~~-~~k~~~~~v~~~~~g~~~~~~kGa~e~il~~c~~~~~~~~~~~~~~~~~~~~G~rvl~vA~~~~e~~l 431 (755)
T TIGR01647 354 -KVLEFVPFDP-VDKRTEATVEDPETGKRFKVTKGAPQVILDLCDNKKEIEEKVEEKVDELASRGYRALGVARTDEEGRW 431 (755)
T ss_pred -ceEEEeccCC-CCCeEEEEEEeCCCceEEEEEeCChHHHHHhcCCcHHHHHHHHHHHHHHHhCCCEEEEEEEEcCCCCc
Confidence 1112223332 4677777762 443 557999998775532 234455666778889999999998 2 3
Q ss_pred EEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce----------------------------
Q 001981 781 RVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGK---------------------------- 832 (986)
Q Consensus 781 ~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~---------------------------- 832 (986)
+++|+++++|++||+++++|++||++|++++|+|||+..+|+++|+++||..
T Consensus 432 ~~~Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 511 (755)
T TIGR01647 432 HFLGLLPLFDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTNIYTADVLLKGDNRDDLPSGELGEMVED 511 (755)
T ss_pred EEEEEeeccCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCcCHHHhcCCcchhhCCHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999999964
Q ss_pred --EEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHHHHHH
Q 001981 833 --VFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRK 910 (986)
Q Consensus 833 --~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~ 910 (986)
+|++++|+||.++|+.||++|+.|+|+|||+||+|||++||||||||+|+|+++++||+|++++++..|++++++||+
T Consensus 512 ~~vfAr~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm~~gtdvAkeaADivLl~d~l~~I~~ai~~gR~ 591 (755)
T TIGR01647 512 ADGFAEVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVAGATDAARSAADIVLTEPGLSVIVDAILESRK 591 (755)
T ss_pred CCEEEecCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEecCCcHHHHHhCCEEEEcCChHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hhccccCCCCCcHHH
Q 001981 911 TISRIRLNYVWALGYNVLAVPIAA-GILYPFTGIRLPPWL 949 (986)
Q Consensus 911 ~~~~i~~n~~~~~~~n~~~i~la~-g~~~~~~g~~l~p~~ 949 (986)
++++|++|+.|.+..|+..+.+.. +.+ ++|++|+|+.
T Consensus 592 ~~~ni~k~i~~~~~~n~~~~~~~~~~~l--~~~~~l~~~~ 629 (755)
T TIGR01647 592 IFQRMKSYVIYRIAETIRIVFFFGLLIL--ILNFYFPPIM 629 (755)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCcchhHHH
Confidence 999999999999999987654332 222 1234478864
No 9
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=3.9e-85 Score=767.70 Aligned_cols=517 Identities=27% Similarity=0.365 Sum_probs=440.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCC-eEEEEEecCCCCeee-EEEeeCCCcCCCcEEEEcCCCcccccE
Q 001981 401 TSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPD-TAHLLTLDGEGNVIS-EMDINTQLMQKNDIIKILPGEKVPVDG 478 (986)
Q Consensus 401 ~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~-~~~v~~~~r~g~~~~-~~~i~~~~l~~GDii~v~~Ge~IPaDg 478 (986)
....+++.++++.++|.+++.|+++.++.|.++.|+ +++++ ||| . +++|++++|++||+|+|++||+||+||
T Consensus 68 i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vi---r~g---~~~~~V~~~eL~~GDiV~v~~Gd~IPaDG 141 (679)
T PRK01122 68 ITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARKL---REP---GAAEEVPATELRKGDIVLVEAGEIIPADG 141 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEE---ECC---CEEEEEEHHHcCCCCEEEEcCCCEEEEEE
Confidence 345566667899999999999999999999999986 69998 676 5 789999999999999999999999999
Q ss_pred EEEeccceeeccccccCCcceecCCCCc---eeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhhcCChHHHHHHHH
Q 001981 479 VVTDGQSYVNESMITGEAKPIAKGPGDK---VIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQI 555 (986)
Q Consensus 479 ~vl~G~~~Vdes~lTGEs~pv~k~~g~~---v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~ 555 (986)
+|++|.+.||||+|||||.|+.|++|+. ||+||.|.+|.++++|+++|.+|.++||.+++++++.+|+|+|...+.+
T Consensus 142 ~vieG~a~VDESaLTGES~PV~K~~G~~~~~V~aGT~v~~G~~~i~Vta~g~~S~lgki~~lve~a~~~ktp~e~al~~l 221 (679)
T PRK01122 142 EVIEGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWIVIRITANPGESFLDRMIALVEGAKRQKTPNEIALTIL 221 (679)
T ss_pred EEEEccEEEEcccccCCCCceEeCCCCccCeEEeceEEEeeeEEEEEEEecccCHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 9999999999999999999999999998 9999999999999999999999999999999999999999999877777
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHHHHHhhcCeE
Q 001981 556 SRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKGASLGVL 635 (986)
Q Consensus 556 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~~~~~~~gil 635 (986)
..+++.+++++++..+.++++.+ ...++.+++++++++|||+++.++|.....++.+++|+|++
T Consensus 222 ~~~l~~i~l~~~~~~~~~~~~~g----------------~~~~l~~~iallV~aiP~alg~l~~~i~i~g~~r~ak~gvL 285 (679)
T PRK01122 222 LAGLTIIFLLVVATLPPFAAYSG----------------GALSITVLVALLVCLIPTTIGGLLSAIGIAGMDRVLQANVI 285 (679)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhC----------------chHHHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhcCCee
Confidence 66655443333222222211111 11367788999999999999999999999999999999999
Q ss_pred ecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh-hhhcCCCC
Q 001981 636 IKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAEANSEHPIAKAVVEHAKKL-RQKLGSPT 714 (986)
Q Consensus 636 vk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~~~~~~~~e~~s~hp~~~ai~~~~~~~-~~~~~~~~ 714 (986)
+|+++++|.+|++|+||||||||||+|++.+.++++.++.+.++++.+++.++..+.||.++||++++++. +.......
T Consensus 286 vk~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~a~~~s~~s~hP~~~AIv~~a~~~~~~~~~~~~ 365 (679)
T PRK01122 286 ATSGRAVEAAGDVDTLLLDKTGTITLGNRQASEFLPVPGVTEEELADAAQLSSLADETPEGRSIVVLAKQRFNLRERDLQ 365 (679)
T ss_pred ecCchHHHHhcCCCEEEEeCCCCCcCCcEEEEEEEeCCCCCHHHHHHHHHHhcCCCCCchHHHHHHHHHhhcCCCchhhc
Confidence 99999999999999999999999999999999999888888899999999999999999999999998762 22110000
Q ss_pred CCCccccceeeeeCCeeEE-EECCEEEEEecHHHHH----hcCCCCChhhHHHHHHHHhccCcEEEEEECCEEEEEEEec
Q 001981 715 EHASEAKDFEVHTGAGVSG-KVGDRTVLVGNKRLMM----AFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVT 789 (986)
Q Consensus 715 ~~~~~~~~~~~~~g~g~~~-~~~~~~~~vg~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~ 789 (986)
....+..+|+.. +++++ .++++.+.+|+++.+. +.+...++++.+..+++.++|.+++++++|++++|+++++
T Consensus 366 ~~~~~~~pF~s~--~~~~gv~~~g~~~~kGa~e~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~va~~~~~lG~i~l~ 443 (679)
T PRK01122 366 SLHATFVPFSAQ--TRMSGVDLDGREIRKGAVDAIRRYVESNGGHFPAELDAAVDEVARKGGTPLVVAEDNRVLGVIYLK 443 (679)
T ss_pred cccceeEeecCc--CceEEEEECCEEEEECCHHHHHHHHHhcCCcChHHHHHHHHHHHhCCCcEEEEEECCeEEEEEEEe
Confidence 001122233332 34444 3678899999997553 3445556667777778889999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHH
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPAL 869 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al 869 (986)
|++|+++++++++||++|++++|+|||++.+|+++|+++||++++++++|++|.++|+.+|++|+.|+|+|||+||+|||
T Consensus 444 D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDGvNDAPAL 523 (679)
T PRK01122 444 DIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATPEDKLALIRQEQAEGRLVAMTGDGTNDAPAL 523 (679)
T ss_pred ccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCHHHHHHHHHHHHHcCCeEEEECCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhccccCC
Q 001981 870 VAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNV-----LAVPIAAGILYPFTG 942 (986)
Q Consensus 870 ~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~-----~~i~la~g~~~~~~g 942 (986)
++||||||||+|++.++++||+|++++|+..|.+++++||++.-+-..-..|++. |- ..+|..+...||..+
T Consensus 524 a~ADVGIAMgsGTdvAkeAADiVLldd~~s~Iv~av~~GR~~~~tr~~~~~f~~~-n~~~~~~~i~p~~~~~~~~~~~ 600 (679)
T PRK01122 524 AQADVGVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVEIGKQLLMTRGALTTFSIA-NDVAKYFAIIPAMFAATYPQLN 600 (679)
T ss_pred HhCCEeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHHHHHHHHHhhhHhhhhhhHH-HHHHHHHHHHHHHHHhhCcccc
Confidence 9999999999999999999999999999999999999999998433333456554 43 456655555666433
No 10
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=6.3e-85 Score=765.25 Aligned_cols=496 Identities=27% Similarity=0.394 Sum_probs=427.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCCC-eEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCcccccEEEEeccc
Q 001981 407 SFILLGKYLEVVAKGKTSDALAKLTDLAPD-TAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVVTDGQS 485 (986)
Q Consensus 407 ~~~~~g~~le~~~~~k~~~~l~~l~~~~p~-~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaDg~vl~G~~ 485 (986)
+..++|.|+|.++++|++++++.|.++.|+ +++++. ||| ++++|++++|++||+|+|++||+||+||+|++|.+
T Consensus 74 ~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~--rdg---~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG~~ 148 (673)
T PRK14010 74 LTLVFANFSEALAEGRGKAQANALRQTQTEMKARRIK--QDG---SYEMIDASDLKKGHIVRVATGEQIPNDGKVIKGLA 148 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEE--eCC---EEEEEEHHHcCCCCEEEECCCCcccCCeEEEEcce
Confidence 344689999999999999999999999987 786432 788 88999999999999999999999999999999999
Q ss_pred eeeccccccCCcceecCCC---CceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHH
Q 001981 486 YVNESMITGEAKPIAKGPG---DKVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPM 562 (986)
Q Consensus 486 ~Vdes~lTGEs~pv~k~~g---~~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (986)
.||||+|||||.|+.|++| +.||+||.+.+|.++++|+++|.+|.++||++++++++.+|+|+|.....+. .
T Consensus 149 ~VDESaLTGES~PV~K~~g~d~~~V~aGT~v~~G~~~i~Vta~g~~T~lgki~~lve~a~~~ktp~e~~l~~l~-----~ 223 (673)
T PRK14010 149 TVDESAITGESAPVIKESGGDFDNVIGGTSVASDWLEVEITSEPGHSFLDKMIGLVEGATRKKTPNEIALFTLL-----M 223 (673)
T ss_pred EEecchhcCCCCceeccCCCccCeeecCceeecceEEEEEEEecccCHHHHHHHHHhhccccCCHHHHHHHHHH-----H
Confidence 9999999999999999999 8899999999999999999999999999999999999999999985444332 2
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHHHHHhhcCeEecCchHH
Q 001981 563 VVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKGASLGVLIKGGNAL 642 (986)
Q Consensus 563 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~~~~~~~gilvk~~~~l 642 (986)
.+.+.++++++|++... . + ..+...+...++++++++||+|+..+|.+...++.+++|+|+++|+++++
T Consensus 224 ~l~ii~l~~~~~~~~~~--~----~-----~~~~~~~~~~val~V~~IP~aL~~~~~~~~~~g~~r~ak~gvLvk~~~av 292 (673)
T PRK14010 224 TLTIIFLVVILTMYPLA--K----F-----LNFNLSIAMLIALAVCLIPTTIGGLLSAIGIAGMDRVTQFNILAKSGRSV 292 (673)
T ss_pred HHhHHHHHHHHHHHHHH--h----h-----ccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCEEEeCcHHH
Confidence 22222233333322110 0 0 12334566777888888999999999999999999999999999999999
Q ss_pred hhhcCCcEEEecCCCccccCccEEEEEEecCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhcCCCCCCCccccc
Q 001981 643 EKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAEANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAKD 722 (986)
Q Consensus 643 e~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~~~~~~~~e~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~ 722 (986)
|.+|++|++|||||||||+|++.+.++.+.++.+.++++.+++.++..+.||+++||++++++.+.+... ...+..+
T Consensus 293 E~lg~v~vI~~DKTGTLT~Gn~~~~~~~~~~~~~~~~ll~~a~~~~~~s~~P~~~AIv~~a~~~~~~~~~---~~~~~~p 369 (673)
T PRK14010 293 ETCGDVNVLILDKTGTITYGNRMADAFIPVKSSSFERLVKAAYESSIADDTPEGRSIVKLAYKQHIDLPQ---EVGEYIP 369 (673)
T ss_pred HHhhCCCEEEEeCCCcCCCCCeEEEEEEeCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHcCCCchh---hhcceec
Confidence 9999999999999999999999988887777777788999988899999999999999998876432100 0112233
Q ss_pred eeee-eCCeeEEEECCEEEEEecHHHHHhc----CCCCChhhHHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHH
Q 001981 723 FEVH-TGAGVSGKVGDRTVLVGNKRLMMAF----HVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQ 797 (986)
Q Consensus 723 ~~~~-~g~g~~~~~~~~~~~vg~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~ 797 (986)
|+.. .+.|+ .++++.+.+|+++++.+. +...+.++.+..+++.++|.++++++.|++++|++++.|++|++++
T Consensus 370 F~~~~k~~gv--~~~g~~i~kGa~~~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~v~~~~~~lG~i~l~Dp~R~~a~ 447 (673)
T PRK14010 370 FTAETRMSGV--KFTTREVYKGAPNSMVKRVKEAGGHIPVDLDALVKGVSKKGGTPLVVLEDNEILGVIYLKDVIKDGLV 447 (673)
T ss_pred cccccceeEE--EECCEEEEECCHHHHHHHhhhcCCCCchHHHHHHHHHHhCCCeEEEEEECCEEEEEEEeecCCcHHHH
Confidence 4332 23444 467888999999988542 2334445666667788899999999999999999999999999999
Q ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEE
Q 001981 798 IVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMA 877 (986)
Q Consensus 798 ~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia 877 (986)
++|++||++|++++|+|||+..+|.++|+++||+++|++++|+||.++|+.+|++|+.|+|+|||+||+|||++||||||
T Consensus 448 e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDGvNDAPALa~ADVGIA 527 (673)
T PRK14010 448 ERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAECKPEDKINVIREEQAKGHIVAMTGDGTNDAPALAEANVGLA 527 (673)
T ss_pred HHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCCCHHHHHHHHHHHHhCCCEEEEECCChhhHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001981 878 IGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVL 928 (986)
Q Consensus 878 ~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~ 928 (986)
||+|+|+++++||+|++++|+..|++++++||+++.|+++.+.|.+..|+.
T Consensus 528 MgsGTdvAkeAADiVLldd~ls~Iv~av~~gR~i~~n~~~~~~f~~~~~~~ 578 (673)
T PRK14010 528 MNSGTMSAKEAANLIDLDSNPTKLMEVVLIGKQLLMTRGSLTTFSIANDIA 578 (673)
T ss_pred eCCCCHHHHHhCCEEEcCCCHHHHHHHHHHHHHHHHHHHHHHheeeeccHH
Confidence 999999999999999999999999999999999999999999999988864
No 11
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=100.00 E-value=1.7e-82 Score=743.26 Aligned_cols=520 Identities=28% Similarity=0.377 Sum_probs=442.7
Q ss_pred chhhhHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHhccCCCe-EEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCc
Q 001981 397 DFFETSAML--ISFILLGKYLEVVAKGKTSDALAKLTDLAPDT-AHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEK 473 (986)
Q Consensus 397 ~~~~~~~~l--~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~-~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~ 473 (986)
.||+.++.+ ++.+++++++|.+++.|+++++++|.++.|++ +++++ +|| ++++|++++|++||+|+|++||+
T Consensus 63 ~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr--~dg---~~~~V~~~~L~~GDiV~V~~Gd~ 137 (675)
T TIGR01497 63 ALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLR--DDG---AIDKVPADQLKKGDIVLVEAGDV 137 (675)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEe--eCC---EEEEEEHHHCCCCCEEEECCCCE
Confidence 467654333 33468999999999999999999999999875 77762 378 88999999999999999999999
Q ss_pred ccccEEEEeccceeeccccccCCcceecCCCCc---eeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhhcCChHHH
Q 001981 474 VPVDGVVTDGQSYVNESMITGEAKPIAKGPGDK---VIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQK 550 (986)
Q Consensus 474 IPaDg~vl~G~~~Vdes~lTGEs~pv~k~~g~~---v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~ 550 (986)
||+||+|++|.+.||||+|||||.|+.|++|+. ||+||.+.+|.+.++|+++|.+|.++||.+++++++.+|+|+|.
T Consensus 138 IPaDG~vieG~~~VDESaLTGES~PV~K~~g~~~~~V~aGT~v~~G~~~i~Vt~~g~~S~lgri~~lve~a~~~ktplq~ 217 (675)
T TIGR01497 138 IPCDGEVIEGVASVDESAITGESAPVIKESGGDFASVTGGTRILSDWLVVECTANPGETFLDRMIALVEGAQRRKTPNEI 217 (675)
T ss_pred EeeeEEEEEccEEEEcccccCCCCceeecCCCCcceeecCcEEEeeEEEEEEEEecccCHHHHHHHHHHhcccCCChHHH
Confidence 999999999999999999999999999999985 99999999999999999999999999999999999999999997
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHHHHHh
Q 001981 551 LADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKGA 630 (986)
Q Consensus 551 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~~~~~ 630 (986)
..+.+..++. ++++++. +.+|.+..+ . ....++..++++++++|||+++...|.....++.+++
T Consensus 218 ~l~~l~~~l~-~v~li~~--~~~~~~~~~--------~-----~~~~~~~~lvallV~aiP~aLg~l~~av~iag~~r~a 281 (675)
T TIGR01497 218 ALTILLIALT-LVFLLVT--ATLWPFAAY--------G-----GNAISVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVL 281 (675)
T ss_pred HHHHHHHHHH-HHHHHHH--HHHHHHHHh--------c-----ChhHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHH
Confidence 7776655443 3332222 223332110 0 1123567789999999999999888888888999999
Q ss_pred hcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhc
Q 001981 631 SLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAEANSEHPIAKAVVEHAKKLRQKL 710 (986)
Q Consensus 631 ~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~~~~~~~~e~~s~hp~~~ai~~~~~~~~~~~ 710 (986)
|+|+++|+++++|.+|++|+||||||||||+|+|++.++++.++.+.++++++++.++..++||.++|+++++++.+...
T Consensus 282 r~gvLvK~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~aa~~~~~s~hP~a~Aiv~~a~~~~~~~ 361 (675)
T TIGR01497 282 GFNVIATSGRAVEACGDVDTLLLDKTGTITLGNRLASEFIPAQGVDEKTLADAAQLASLADDTPEGKSIVILAKQLGIRE 361 (675)
T ss_pred HCCeEeeCcHHHHHhhCCCEEEECCCCcccCCCeEEEEEEecCCCcHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999998888888999999999999999999999999988755321
Q ss_pred CCCCCCCccccceeeeeCC-eeEEE--ECCEEEEEecHHHHH----hcCCCCChhhHHHHHHHHhccCcEEEEEECCEEE
Q 001981 711 GSPTEHASEAKDFEVHTGA-GVSGK--VGDRTVLVGNKRLMM----AFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVA 783 (986)
Q Consensus 711 ~~~~~~~~~~~~~~~~~g~-g~~~~--~~~~~~~vg~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~~ 783 (986)
... .....++...++. ++++. .+++.+.+|+++.+. +.+...+.++.+..+++.++|.|++++++|++++
T Consensus 362 ~~~---~~~~~~~~pf~~~~~~sg~~~~~g~~~~kGa~e~i~~~~~~~g~~~~~~~~~~~~~~a~~G~r~l~va~~~~~l 438 (675)
T TIGR01497 362 DDV---QSLHATFVEFTAQTRMSGINLDNGRMIRKGAVDAIKRHVEANGGHIPTDLDQAVDQVARQGGTPLVVCEDNRIY 438 (675)
T ss_pred ccc---ccccceEEEEcCCCcEEEEEEeCCeEEEECCHHHHHHHHHhcCCCCcHHHHHHHHHHHhCCCeEEEEEECCEEE
Confidence 110 1112223333333 56654 478899999996553 4455566667777788899999999999999999
Q ss_pred EEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecCcccHHHHHHHHhHcCCEEEEEcCCc
Q 001981 784 GAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDGI 863 (986)
Q Consensus 784 G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ 863 (986)
|+++++|++||+++++|++||++|++++|+|||+..+|.++|+++||++++++++|++|.++++.+|++|+.|+|+|||.
T Consensus 439 G~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a~~~PedK~~~v~~lq~~g~~VamvGDG~ 518 (675)
T TIGR01497 439 GVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIAEATPEDKIALIRQEQAEGKLVAMTGDGT 518 (675)
T ss_pred EEEEecccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEcCCCHHHHHHHHHHHHHcCCeEEEECCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhccc
Q 001981 864 NDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNV----LAVPIAAGILYP 939 (986)
Q Consensus 864 nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~----~~i~la~g~~~~ 939 (986)
||+|||++|||||||++|++.++++||++++++|+..|++++++||+++-+...-..|+++-++ ..+|..+...||
T Consensus 519 NDapAL~~AdvGiAm~~gt~~akeaadivLldd~~s~Iv~av~~GR~~~~t~~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 598 (675)
T TIGR01497 519 NDAPALAQADVGVAMNSGTQAAKEAANMVDLDSDPTKLIEVVHIGKQLLITRGALTTFSIANDVAKYFAIIPAIFAAAYP 598 (675)
T ss_pred chHHHHHhCCEeEEeCCCCHHHHHhCCEEECCCCHHHHHHHHHHHHHHHHHHHHHheeeecccHHHHHHHHHHHHHhhCc
Confidence 9999999999999999999999999999999999999999999999999888777777776554 345544444455
Q ss_pred c
Q 001981 940 F 940 (986)
Q Consensus 940 ~ 940 (986)
.
T Consensus 599 ~ 599 (675)
T TIGR01497 599 Q 599 (675)
T ss_pred c
Confidence 3
No 12
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=5e-83 Score=785.21 Aligned_cols=513 Identities=22% Similarity=0.286 Sum_probs=441.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCC------CCeeeEEEeeCCCcCCCcEEEEcCC
Q 001981 398 FFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGE------GNVISEMDINTQLMQKNDIIKILPG 471 (986)
Q Consensus 398 ~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~------g~~~~~~~i~~~~l~~GDii~v~~G 471 (986)
|. .+++++++++++.+++.++++|+.+++++|.++.|.+++|+ || | ++++|++++|+|||+|.|++|
T Consensus 122 ~~-~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~Vi---R~g~~~~~g---~~~~I~~~eLvpGDiV~l~~G 194 (902)
T PRK10517 122 LF-AAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL---RVINDKGEN---GWLEIPIDQLVPGDIIKLAAG 194 (902)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE---ECCccCCCC---eEEEEEHHhCCCCCEEEECCC
Confidence 44 45677788899999999999999999999999999999999 66 6 789999999999999999999
Q ss_pred CcccccEEEEeccc-eeeccccccCCcceecCCCC-------------ceeeeeeecCceEEEEEEEeCCchHHHHHHHH
Q 001981 472 EKVPVDGVVTDGQS-YVNESMITGEAKPIAKGPGD-------------KVIGGTMNENGCLQVKATHVGSETALSQIVQL 537 (986)
Q Consensus 472 e~IPaDg~vl~G~~-~Vdes~lTGEs~pv~k~~g~-------------~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~ 537 (986)
|+|||||+|++|+. .||||+|||||.|+.|.+|+ .+|+||.+.+|.++++|+++|.+|.+|+|.++
T Consensus 195 d~IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~vV~atG~~T~~GkI~~~ 274 (902)
T PRK10517 195 DMIPADLRILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWFGQLAGR 274 (902)
T ss_pred CEEeeeEEEEEcCceEEEecCcCCCCCceecccccccccccCccccccceeeCceEeeeeEEEEEEEeccccHHHHHHHH
Confidence 99999999999975 99999999999999999875 69999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhhcccchhhh
Q 001981 538 VEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLA 617 (986)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la 617 (986)
+++++.+++|+|+.++++++++++++++++.+++++|++.. .+|..++.+++++++++|||+|+++
T Consensus 275 v~~~~~~~t~lq~~~~~i~~~l~~~~~~~~~~v~~i~~~~~--------------~~~~~~l~~alsv~V~~~Pe~LP~~ 340 (902)
T PRK10517 275 VSEQDSEPNAFQQGISRVSWLLIRFMLVMAPVVLLINGYTK--------------GDWWEAALFALSVAVGLTPEMLPMI 340 (902)
T ss_pred hhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhc--------------CCHHHHHHHHHHHHHHHcccHHHHH
Confidence 99988899999999999999999988888887777665432 2466788899999999999999999
Q ss_pred HHHHHHHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCCCCHHHHHHHHHHHH---hcCCCh
Q 001981 618 TPTAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAE---ANSEHP 694 (986)
Q Consensus 618 ~~~a~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~~~~~~~~e---~~s~hp 694 (986)
+++++..+..+++|+|+++|+++++|++|++|+||||||||||+|+|++.++....+.+.++++.+++..+ ...+||
T Consensus 341 vt~~la~g~~~mak~~ilVk~l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~~~~~~~~~~ll~~a~l~~~~~~~~~~p 420 (902)
T PRK10517 341 VTSTLARGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDISGKTSERVLHSAWLNSHYQTGLKNL 420 (902)
T ss_pred HHHHHHHHHHHHHhCCcEEecchhhhhccCCCEEEecCCCccccceEEEEEEecCCCCCHHHHHHHHHhcCCcCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999886555556677777665532 235799
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCccccceeeeeCCeeEEEEC---C--EEEEEecHHHHHhcCC---------CCCh---
Q 001981 695 IAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVG---D--RTVLVGNKRLMMAFHV---------PVGP--- 757 (986)
Q Consensus 695 ~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~---~--~~~~vg~~~~~~~~~~---------~~~~--- 757 (986)
++.|++.++..................+|+.. .++++..+. + ..+..|+++.+.+.+. +.++
T Consensus 421 ~d~All~~a~~~~~~~~~~~~~~~~~~pFds~-~k~msvvv~~~~~~~~~~~KGa~e~il~~c~~~~~~~~~~~l~~~~~ 499 (902)
T PRK10517 421 LDTAVLEGVDEESARSLASRWQKIDEIPFDFE-RRRMSVVVAENTEHHQLICKGALEEILNVCSQVRHNGEIVPLDDIML 499 (902)
T ss_pred HHHHHHHHHHhcchhhhhhcCceEEEeeeCCC-cceEEEEEEECCCeEEEEEeCchHHHHHhchhhhcCCCeecCCHHHH
Confidence 99999998765321000000000111123222 455665542 2 3567799887765332 1222
Q ss_pred -hhHHHHHHHHhccCcEEEEEE----------------CCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHH
Q 001981 758 -EVDDYMMKNEQLARTCVLVAI----------------DGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWAT 820 (986)
Q Consensus 758 -~~~~~~~~~~~~g~~~i~va~----------------~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~ 820 (986)
++.+..+++..+|.+++++|+ |++++|+++++|++||+++++|++||++|++++|+|||+..+
T Consensus 500 ~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~e~~l~~lGli~~~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t 579 (902)
T PRK10517 500 RRIKRVTDTLNRQGLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGVTVKILTGDSELV 579 (902)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEecCCccccccccccccCceeeehHhhhCcchhhHHHHHHHHHHCCCEEEEEcCCCHHH
Confidence 233445667889999999996 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCc-------------------------eEEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCce
Q 001981 821 ANAIAKEVGIG-------------------------KVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVG 875 (986)
Q Consensus 821 a~~~a~~~gi~-------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vg 875 (986)
|.++|+++||+ .+|++++|+||.++|+.||++|+.|+|+|||+||+|||++||||
T Consensus 580 A~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K~~IV~~Lq~~G~vVam~GDGvNDaPALk~ADVG 659 (902)
T PRK10517 580 AAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFARLTPMHKERIVTLLKREGHVVGFMGDGINDAPALRAADIG 659 (902)
T ss_pred HHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHHHHHHHHHHHCCCEEEEECCCcchHHHHHhCCEE
Confidence 99999999997 89999999999999999999999999999999999999999999
Q ss_pred EEecCCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001981 876 MAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAVPI 932 (986)
Q Consensus 876 ia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~l 932 (986)
||||+|+|+++++||+||+++++..|++++++||++++||++++.|.+..|+..+..
T Consensus 660 IAmg~gtdvAkeaADiVLldd~~~~I~~ai~~gR~i~~nI~k~i~~~ls~n~~~v~~ 716 (902)
T PRK10517 660 ISVDGAVDIAREAADIILLEKSLMVLEEGVIEGRRTFANMLKYIKMTASSNFGNVFS 716 (902)
T ss_pred EEeCCcCHHHHHhCCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999855443
No 13
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=1.2e-82 Score=783.07 Aligned_cols=509 Identities=23% Similarity=0.301 Sum_probs=437.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecC------CCCeeeEEEeeCCCcCCCcEEEEcCCCcc
Q 001981 401 TSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDG------EGNVISEMDINTQLMQKNDIIKILPGEKV 474 (986)
Q Consensus 401 ~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r------~g~~~~~~~i~~~~l~~GDii~v~~Ge~I 474 (986)
.+++++++++++.+++.+++.|+++++++|.++.+.+++|+ | || ++++|++++|+|||+|.|++||+|
T Consensus 90 ~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~---R~~~~~~dg---~~~~I~~~eLv~GDiV~l~~Gd~V 163 (867)
T TIGR01524 90 ATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVL---RVINENGNG---SMDEVPIDALVPGDLIELAAGDII 163 (867)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEE---EecccCCCC---eEEEEEhhcCCCCCEEEECCCCEE
Confidence 45566677777778888888888888999999999999999 6 78 899999999999999999999999
Q ss_pred cccEEEEeccc-eeeccccccCCcceecCCCC-------------ceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHH
Q 001981 475 PVDGVVTDGQS-YVNESMITGEAKPIAKGPGD-------------KVIGGTMNENGCLQVKATHVGSETALSQIVQLVEA 540 (986)
Q Consensus 475 PaDg~vl~G~~-~Vdes~lTGEs~pv~k~~g~-------------~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~ 540 (986)
||||+|++|+. .||||+|||||.|+.|.+|+ .+|+||.+.+|.++++|+++|.+|.+|||.+++++
T Consensus 164 PaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~gki~~~v~~ 243 (867)
T TIGR01524 164 PADARVISARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFGSLAIAATE 243 (867)
T ss_pred cccEEEEecCceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHHHHHHHhhC
Confidence 99999999986 99999999999999999875 59999999999999999999999999999999988
Q ss_pred HhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhhcccchhhhHHH
Q 001981 541 AQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPT 620 (986)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~ 620 (986)
..+++|+|+.++++++++.+++++++++++++|++.. .+|..++.+++++++++|||+|++++++
T Consensus 244 -~~~~t~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~al~l~v~~iP~~Lp~~vt~ 308 (867)
T TIGR01524 244 -RRGQTAFDKGVKSVSKLLIRFMLVMVPVVLMINGLMK--------------GDWLEAFLFALAVAVGLTPEMLPMIVSS 308 (867)
T ss_pred -CCCCCcHHHHHHHHHHHHHHHHHHHHHHheehHHHhc--------------CCHHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 7778999999999999999999988888877765432 2456788899999999999999999999
Q ss_pred HHHHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCCCCHHHHHHHHHHHH---hcCCChHHH
Q 001981 621 AVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAE---ANSEHPIAK 697 (986)
Q Consensus 621 a~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~~~~~~~~e---~~s~hp~~~ 697 (986)
++..+..+++|+|+++|++.++|++|++|+||||||||||+|+|++.++...++.+.++++.+++..+ ..++||++.
T Consensus 309 ~la~g~~~mak~~ilvk~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~~~~~~~~~~~l~~a~l~~~~~~~~~~p~~~ 388 (867)
T TIGR01524 309 NLAKGAINMSKKKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEKHIDSSGETSERVLKMAWLNSYFQTGWKNVLDH 388 (867)
T ss_pred HHHHHHHHHHhCCcEEccchhhhhccCccEEEecCCCccccCeEEEEEEecCCCCCHHHHHHHHHHhCCCCCCCCChHHH
Confidence 99999999999999999999999999999999999999999999999987666666777777765422 235799999
Q ss_pred HHHHHHHHhhhhcCCCCCCCccccceeeeeCCeeEEEECC-----EEEEEecHHHHHhcCC---------CCCh----hh
Q 001981 698 AVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGKVGD-----RTVLVGNKRLMMAFHV---------PVGP----EV 759 (986)
Q Consensus 698 ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~-----~~~~vg~~~~~~~~~~---------~~~~----~~ 759 (986)
|+++++..................+|+.. ++++++.+++ ..+..|+++.+.+.+. +.++ ++
T Consensus 389 Al~~~~~~~~~~~~~~~~~~~~~~pF~s~-~k~ms~~v~~~~~~~~~~~KGa~e~il~~c~~~~~~~~~~~l~~~~~~~i 467 (867)
T TIGR01524 389 AVLAKLDESAARQTASRWKKVDEIPFDFD-RRRLSVVVENRAEVTRLICKGAVEEMLTVCTHKRFGGAVVTLSESEKSEL 467 (867)
T ss_pred HHHHHHHhhchhhHhhcCceEEEeccCCC-cCEEEEEEEcCCceEEEEEeCcHHHHHHhchhhhcCCceecCCHHHHHHH
Confidence 99998865321100000001111223322 5677776643 3477899888765332 1222 34
Q ss_pred HHHHHHHHhccCcEEEEEE----------------CCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHH
Q 001981 760 DDYMMKNEQLARTCVLVAI----------------DGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANA 823 (986)
Q Consensus 760 ~~~~~~~~~~g~~~i~va~----------------~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~ 823 (986)
.+...++..+|+|++++|+ |.+++|+++++|++|++++++|++||++|++++|+|||+..+|.+
T Consensus 468 ~~~~~~~a~~G~rvlavA~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~a 547 (867)
T TIGR01524 468 QDMTAEMNRQGIRVIAVATKTLKVGEADFTKTDEEQLIIEGFLGFLDPPKESTKEAIAALFKNGINVKVLTGDNEIVTAR 547 (867)
T ss_pred HHHHHHHHhcCCEEEEEEEeccCcccccccccccCCcEEEEEEEeeCCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Confidence 4555677889999999997 237999999999999999999999999999999999999999999
Q ss_pred HHHHcCCc-------------------------eEEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEe
Q 001981 824 IAKEVGIG-------------------------KVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAI 878 (986)
Q Consensus 824 ~a~~~gi~-------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~ 878 (986)
+|+++||. ++|++++|+||.++|+.||++|+.|+|+|||+||+|||++|||||||
T Consensus 548 IA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~vVam~GDGvNDapALk~AdVGIAm 627 (867)
T TIGR01524 548 ICQEVGIDANDFLLGADIEELSDEELARELRKYHIFARLTPMQKSRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISV 627 (867)
T ss_pred HHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHHHHHHHHHhCCCEEEEECCCcccHHHHHhCCEEEEe
Confidence 99999997 89999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001981 879 GAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAVP 931 (986)
Q Consensus 879 ~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~ 931 (986)
|+|+|+++++||+|++++++..|++++++||++++||++|+.|.+..|+..+.
T Consensus 628 g~gtdvAk~aADiVLldd~~~~I~~ai~~gR~i~~ni~k~i~~~ls~n~~~~~ 680 (867)
T TIGR01524 628 DTAADIAKEASDIILLEKSLMVLEEGVIEGRNTFGNILKYLKMTASSNFGNVF 680 (867)
T ss_pred CCccHHHHHhCCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999977765433
No 14
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=5.9e-82 Score=777.26 Aligned_cols=507 Identities=24% Similarity=0.306 Sum_probs=431.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCC------CCeeeEEEeeCCCcCCCcEEEEcC
Q 001981 397 DFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGE------GNVISEMDINTQLMQKNDIIKILP 470 (986)
Q Consensus 397 ~~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~------g~~~~~~~i~~~~l~~GDii~v~~ 470 (986)
.|. .+++++++++++.+++.++++|+.+++++|.++.|.+++|+ || | ++++|++++|+|||+|.|++
T Consensus 110 ~~~-~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~---Rdg~~~~~g---~~~~I~~~eLv~GDiV~l~~ 182 (903)
T PRK15122 110 DLT-GVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVL---RRGHAGAEP---VRREIPMRELVPGDIVHLSA 182 (903)
T ss_pred cHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEE---ECCccCCCC---eEEEEEHHHCCCCCEEEECC
Confidence 344 45667778888889999999999999999999999999999 55 5 68899999999999999999
Q ss_pred CCcccccEEEEeccc-eeeccccccCCcceecCC-----------------------CCceeeeeeecCceEEEEEEEeC
Q 001981 471 GEKVPVDGVVTDGQS-YVNESMITGEAKPIAKGP-----------------------GDKVIGGTMNENGCLQVKATHVG 526 (986)
Q Consensus 471 Ge~IPaDg~vl~G~~-~Vdes~lTGEs~pv~k~~-----------------------g~~v~aGs~~~~g~~~~~v~~~g 526 (986)
||+|||||+|++|+. .||||+|||||.|+.|.+ +|.+|+||.+.+|.++++|+++|
T Consensus 183 Gd~IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG 262 (903)
T PRK15122 183 GDMIPADVRLIESRDLFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATG 262 (903)
T ss_pred CCEEeeeEEEEEcCceEEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEec
Confidence 999999999999986 899999999999999985 36899999999999999999999
Q ss_pred CchHHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhh
Q 001981 527 SETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVL 606 (986)
Q Consensus 527 ~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vl 606 (986)
.+|.+|+|.+++++ ...++|+|+..+++++++..+.++++.+.+++.++.. .+|..++.++++++
T Consensus 263 ~~T~~gkI~~~v~~-~~~~t~l~~~l~~i~~~l~~~~~~~~~~v~~~~~~~~--------------~~~~~~l~~aisl~ 327 (903)
T PRK15122 263 SRTYFGSLAKSIVG-TRAQTAFDRGVNSVSWLLIRFMLVMVPVVLLINGFTK--------------GDWLEALLFALAVA 327 (903)
T ss_pred cccHhhHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--------------CCHHHHHHHHHHHH
Confidence 99999999999987 5677899999999998887766666555554432211 24667888999999
Q ss_pred hhhcccchhhhHHHHHHHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCCCCHHHHHHHHHH
Q 001981 607 VVACPCALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATA 686 (986)
Q Consensus 607 v~~~P~al~la~~~a~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~~~~~~~ 686 (986)
+++|||+|++++++++..+..+++|+|+++|++.++|+||++|+||||||||||+|+|.+.+++..++.+.++++.+++.
T Consensus 328 V~~~Pe~Lp~~vt~~La~g~~~mak~~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~~~~~~~~~~~l~~a~l 407 (903)
T PRK15122 328 VGLTPEMLPMIVSSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHLDVSGRKDERVLQLAWL 407 (903)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHcCCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEEcCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887766666777777653
Q ss_pred H---HhcCCChHHHHHHHHHHHhhhhcCCCCCCCccccceeeeeCC----eeEEEE---CCEE--EEEecHHHHHhcCC-
Q 001981 687 A---EANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGA----GVSGKV---GDRT--VLVGNKRLMMAFHV- 753 (986)
Q Consensus 687 ~---e~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----g~~~~~---~~~~--~~vg~~~~~~~~~~- 753 (986)
. +..++||++.|+++++.+.+.... .........++.. .++..+ +++. +..|+++.+...+.
T Consensus 408 ~s~~~~~~~~p~e~All~~a~~~~~~~~-----~~~~~~~~~~pF~s~~k~ms~v~~~~~~~~~~~~KGa~e~il~~c~~ 482 (903)
T PRK15122 408 NSFHQSGMKNLMDQAVVAFAEGNPEIVK-----PAGYRKVDELPFDFVRRRLSVVVEDAQGQHLLICKGAVEEMLAVATH 482 (903)
T ss_pred hCCCCCCCCChHHHHHHHHHHHcCchhh-----hhcCceEEEeeeCCCcCEEEEEEEcCCCcEEEEECCcHHHHHHhchh
Confidence 2 234679999999999876543110 0111122222222 222222 3444 44499887655331
Q ss_pred --------CCCh----hhHHHHHHHHhccCcEEEEEE------------------CCEEEEEEEecCCCChhHHHHHHHH
Q 001981 754 --------PVGP----EVDDYMMKNEQLARTCVLVAI------------------DGRVAGAFAVTDPVKPEAQIVVSSL 803 (986)
Q Consensus 754 --------~~~~----~~~~~~~~~~~~g~~~i~va~------------------~~~~~G~i~~~d~~~~~~~~~i~~l 803 (986)
++++ ++.+..+++..+|+|++++|+ |++++|+++++|++|++++++|++|
T Consensus 483 ~~~~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~a~~aI~~l 562 (903)
T PRK15122 483 VRDGDTVRPLDEARRERLLALAEAYNADGFRVLLVATREIPGGESRAQYSTADERDLVIRGFLTFLDPPKESAAPAIAAL 562 (903)
T ss_pred hhcCCCeecCCHHHHHHHHHHHHHHHhCCCEEEEEEEeccCccccccccccccccCcEEEEEEeccCccHHHHHHHHHHH
Confidence 2232 234445677889999999996 3489999999999999999999999
Q ss_pred HHCCCeEEEEcCCCHHHHHHHHHHcCCc-------------------------eEEEecCcccHHHHHHHHhHcCCEEEE
Q 001981 804 RSMEISSIMVTGDNWATANAIAKEVGIG-------------------------KVFAETDPVGKANKIKELQLKGMTVAM 858 (986)
Q Consensus 804 ~~~gi~~~~~Tgd~~~~a~~~a~~~gi~-------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~ 858 (986)
|++|++++|+|||+..+|.++|+++||. ++|++++|+||.++|+.||++|+.|+|
T Consensus 563 ~~aGI~v~miTGD~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~~iV~~Lq~~G~vVam 642 (903)
T PRK15122 563 RENGVAVKVLTGDNPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKSRVLKALQANGHTVGF 642 (903)
T ss_pred HHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999997 799999999999999999999999999
Q ss_pred EcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001981 859 VGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAV 930 (986)
Q Consensus 859 vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i 930 (986)
+|||+||+|||++||||||||+|+|+++++||+|++++|+..|++++++||++++||++++.|.+..|+..+
T Consensus 643 tGDGvNDaPALk~ADVGIAmg~gtdvAkeaADiVLldd~f~~Iv~ai~~gR~i~~nI~k~i~~~ls~n~~~~ 714 (903)
T PRK15122 643 LGDGINDAPALRDADVGISVDSGADIAKESADIILLEKSLMVLEEGVIKGRETFGNIIKYLNMTASSNFGNV 714 (903)
T ss_pred ECCCchhHHHHHhCCEEEEeCcccHHHHHhcCEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987543
No 15
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=4.7e-79 Score=761.04 Aligned_cols=563 Identities=24% Similarity=0.305 Sum_probs=441.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCccc
Q 001981 397 DFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDL-APDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVP 475 (986)
Q Consensus 397 ~~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~-~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IP 475 (986)
.|++.. ++++.+++.-.+...+..++++.+++|.+. .+.+++|+ ||| ++++|++++|+|||+|.|++||+||
T Consensus 127 ~~~~~~-~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~Vi---RdG---~~~~I~~~~Lv~GDiV~l~~Gd~IP 199 (941)
T TIGR01517 127 GWIEGV-AILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVI---RGG---QEQQISIHDIVVGDIVSLSTGDVVP 199 (941)
T ss_pred chHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEE---ECC---EEEEEeHHHCCCCCEEEECCCCEec
Confidence 345443 333333333344444444555666666553 46788999 899 8999999999999999999999999
Q ss_pred ccEEEEec-cceeeccccccCCcceecCCCCc--eeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhhcCChHHHHH
Q 001981 476 VDGVVTDG-QSYVNESMITGEAKPIAKGPGDK--VIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLA 552 (986)
Q Consensus 476 aDg~vl~G-~~~Vdes~lTGEs~pv~k~~g~~--v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~ 552 (986)
|||+|++| .+.||||+|||||.|+.|.+|+. +|+||.+.+|.+.++|+++|.+|.+|||.+++++++ +++|+++.+
T Consensus 200 aD~~li~g~~l~VdES~LTGES~pv~K~~~~~n~v~~GT~v~~G~~~~iV~~tG~~T~~gki~~~~~~~~-~~t~l~~~~ 278 (941)
T TIGR01517 200 ADGVFISGLSLEIDESSITGESDPIKKGAPKDSFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRAEG-EDTPLQEKL 278 (941)
T ss_pred ccEEEEEcCcEEEEecccCCCCCcccccCCCCceEEeCCeEEeeEEEEEEEEeCCCcHHHHHHHhhccCC-CCCcHHHHH
Confidence 99999999 78999999999999999999877 999999999999999999999999999999998865 678999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCc--ccccchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHHHHHh
Q 001981 553 DQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKH--WIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKGA 630 (986)
Q Consensus 553 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~~~~~ 630 (986)
+++++++.+++++++++.+++|++......+... ........+..++.+++++++++|||+|++++|+++..++.+++
T Consensus 279 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~llv~~iP~~Lp~~vti~l~~~~~~ma 358 (941)
T TIGR01517 279 SELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVPEGLPLAVTIALAYSMKKMM 358 (941)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHH
Confidence 9999999999998888888877542211100000 00001135677889999999999999999999999999999999
Q ss_pred hcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCC-C---------C--HHHHHHHHHHHHh---------
Q 001981 631 SLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSH-F---------S--MEEFCDMATAAEA--------- 689 (986)
Q Consensus 631 ~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~-~---------~--~~~~~~~~~~~e~--------- 689 (986)
++|+++|+++++|.||++|+||||||||||+|+|++.+++..++ + + ..+++..+..+..
T Consensus 359 k~~ilvk~l~a~E~lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~ 438 (941)
T TIGR01517 359 KDNNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGEQRFNVRDVLRNVPKHVRNILVEGISLNSSSEEVVDRG 438 (941)
T ss_pred hCCCEEechHHhhhccCceEEEEcCcCceeeceEEEEEEEEecceEecCcccccCCHHHHHHHHHHHHhCCCCccccCCC
Confidence 99999999999999999999999999999999999999876432 1 0 1122222222211
Q ss_pred ----cCCChHHHHHHHHHHHhhhhcCC--CCCCCccccceeee-eCCeeEEEECCE---EEEEecHHHHHhcCC------
Q 001981 690 ----NSEHPIAKAVVEHAKKLRQKLGS--PTEHASEAKDFEVH-TGAGVSGKVGDR---TVLVGNKRLMMAFHV------ 753 (986)
Q Consensus 690 ----~s~hp~~~ai~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~g~g~~~~~~~~---~~~vg~~~~~~~~~~------ 753 (986)
..++|.+.|+++++++.+.+... .........+|+.. .++++....++. .+..|+++.+...+.
T Consensus 439 ~~~~~~g~p~e~All~~~~~~~~~~~~~~~~~~~~~~~pF~s~~k~msvv~~~~~~~~~~~~KGA~e~il~~c~~~~~~~ 518 (941)
T TIGR01517 439 GKRAFIGSKTECALLGFLLLLGRDYQEVRAEEKVVKIYPFNSERKFMSVVVKHSGGKVREFRKGASEIVLKPCRKRLDSN 518 (941)
T ss_pred CccccCCCccHHHHHHHHHHcCCCHHHHHhhchhccccccCCCCCeEEEEEEeCCCcEEEEEECChHHHHHhhhHHhhcC
Confidence 12568889999998765432100 00011223445442 234444443332 456688776654321
Q ss_pred --C--CC---hhhHHHHHHHHhccCcEEEEEE----------------CCEEEEEEEecCCCChhHHHHHHHHHHCCCeE
Q 001981 754 --P--VG---PEVDDYMMKNEQLARTCVLVAI----------------DGRVAGAFAVTDPVKPEAQIVVSSLRSMEISS 810 (986)
Q Consensus 754 --~--~~---~~~~~~~~~~~~~g~~~i~va~----------------~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~ 810 (986)
. .+ +++.+...++..+|.|++++|+ |.+++|+++++|++|++++++|++||++|+++
T Consensus 519 g~~~~~~~~~~~i~~~~~~~a~~G~Rvl~~A~~~~~~~~~~~~~~~e~~l~~lGli~~~Dplr~~~~~aI~~l~~aGI~v 598 (941)
T TIGR01517 519 GEATPISDDKDRCADVIEPLASDALRTICLAYRDFAPEEFPRKDYPNGGLTLIGVVGIKDPLRPGVREAVQECQRAGITV 598 (941)
T ss_pred CCcccCcHHHHHHHHHHHHHHhcCCEEEEEEEEecCccccccccccccCcEEEEEeeccCCCchhHHHHHHHHHHCCCEE
Confidence 1 11 2345566778899999999997 34899999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHcCCc---------------------------eEEEecCcccHHHHHHHHhHcCCEEEEEcCCc
Q 001981 811 IMVTGDNWATANAIAKEVGIG---------------------------KVFAETDPVGKANKIKELQLKGMTVAMVGDGI 863 (986)
Q Consensus 811 ~~~Tgd~~~~a~~~a~~~gi~---------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~ 863 (986)
+|+|||+..+|.++|+++||. .+|+|++|+||.++|+.||++|+.|+|+|||+
T Consensus 599 ~miTGD~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~~iV~~lq~~g~vVam~GDGv 678 (941)
T TIGR01517 599 RMVTGDNIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQLLVLMLKDMGEVVAVTGDGT 678 (941)
T ss_pred EEECCCChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 999999999999999999995 69999999999999999999999999999999
Q ss_pred ccHHHHHhCCceEEec-CCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccC
Q 001981 864 NDSPALVAADVGMAIG-AGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAVPIAA-GILYPFT 941 (986)
Q Consensus 864 nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~la~-g~~~~~~ 941 (986)
||+|||++|||||||| +|+|.++++||++++++++..|++++++||++++++++|+.|++++|+..+++++ |.++
T Consensus 679 NDapALk~AdVGIAmg~~gtdvAk~aADivL~dd~f~~I~~~i~~gR~~~~ni~k~i~~~l~~n~~~i~~~~~~~~~--- 755 (941)
T TIGR01517 679 NDAPALKLADVGFSMGISGTEVAKEASDIILLDDNFASIVRAVKWGRNVYDNIRKFLQFQLTVNVVAVILTFVGSCI--- 755 (941)
T ss_pred chHHHHHhCCcceecCCCccHHHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 9999999999999999 8999999999999999999999999999999999999999999999999888876 3332
Q ss_pred CCCCcHHHHHHHhhchhHhHhhhhhhcccC
Q 001981 942 GIRLPPWLAGACMAASSLSVLCSSLLLQSY 971 (986)
Q Consensus 942 g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~ 971 (986)
+. ..|+-+.-+....-+...+.++.|...
T Consensus 756 ~~-~~pl~~~qil~inl~~d~~~al~l~~e 784 (941)
T TIGR01517 756 SS-TSPLTAVQLLWVNLIMDTLAALALATE 784 (941)
T ss_pred hc-cccHHHHHHHHHHHHHHHhhHHHHccC
Confidence 11 134444444444556666777777544
No 16
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=3.9e-79 Score=757.22 Aligned_cols=534 Identities=23% Similarity=0.312 Sum_probs=432.0
Q ss_pred HHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCcccccEEEEecc-ceeecccc
Q 001981 414 YLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVVTDGQ-SYVNESMI 492 (986)
Q Consensus 414 ~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaDg~vl~G~-~~Vdes~l 492 (986)
.+..+++.|+.+.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.|++||+|||||+|++|+ ..||||+|
T Consensus 95 ~i~~~qe~~a~~~l~~L~~l~~~~~~Vi---Rdg---~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g~~l~VDES~L 168 (884)
T TIGR01522 95 TVGFVQEYRSEKSLEALNKLVPPECHLI---REG---KLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVDLSIDESNL 168 (884)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeeEEE---ECC---EEEEEEHHHCccCCEEEecCCCEEeeeEEEEEcCceEEEcccc
Confidence 4444445566788899999999999999 899 8999999999999999999999999999999995 69999999
Q ss_pred ccCCcceecCCCC--------------ceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhhcCChHHHHHHHHHhh
Q 001981 493 TGEAKPIAKGPGD--------------KVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRF 558 (986)
Q Consensus 493 TGEs~pv~k~~g~--------------~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 558 (986)
||||.|+.|.+|+ .+|+||.+.+|.++++|+++|.+|.+|+|.+++++++.+++|+|+.+++++++
T Consensus 169 TGES~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~kt~lq~~l~~l~~~ 248 (884)
T TIGR01522 169 TGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMMQAIEKPKTPLQKSMDLLGKQ 248 (884)
T ss_pred cCCCcceecccccccccccccccccCceEEeCCEEEeeeEEEEEEEecCccHHHHHHHHhccCCCCCCcHHHHHHHHHHH
Confidence 9999999999874 79999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHHHHHhhcCeEecC
Q 001981 559 FVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKGASLGVLIKG 638 (986)
Q Consensus 559 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~~~~~~~gilvk~ 638 (986)
+++++++++++.++++++.+ .+|..++.+++++++++|||+|++++|+++..++.+++++|+++|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~v~llv~aiP~~Lp~~vt~~l~~~~~r~ak~~ilvk~ 314 (884)
T TIGR01522 249 LSLVSFGVIGVICLVGWFQG--------------KDWLEMFTISVSLAVAAIPEGLPIIVTVTLALGVLRMSKKRAIVRK 314 (884)
T ss_pred HHHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhhcCCcccc
Confidence 98877665555554433322 2466788899999999999999999999999999999999999999
Q ss_pred chHHhhhcCCcEEEecCCCccccCccEEEEEEecCCCC----------------------------HHHHHHHHHHHHhc
Q 001981 639 GNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFS----------------------------MEEFCDMATAAEAN 690 (986)
Q Consensus 639 ~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~~----------------------------~~~~~~~~~~~e~~ 690 (986)
++++|+||++|+||||||||||+|+|++.+++..++.. ..+++..++.+...
T Consensus 315 ~~a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 394 (884)
T TIGR01522 315 LPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTSDGLHTMLNAVSLNQFGEVIVDGDVLHGFYTVAVSRILEAGNLCNNA 394 (884)
T ss_pred hHHHHhccCccEEEecCccccccCeEEEEEEEecCceEeeccCCccCCCCcccccccccccccCHHHHHHHHHHhhhCCC
Confidence 99999999999999999999999999999987643210 12344444433321
Q ss_pred ---------CCChHHHHHHHHHHHhhhhcCCCCCCCccccceeeeeCCeeEEE--E--CC--EEEEEecHHHHHhcCC--
Q 001981 691 ---------SEHPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTGAGVSGK--V--GD--RTVLVGNKRLMMAFHV-- 753 (986)
Q Consensus 691 ---------s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~--~--~~--~~~~vg~~~~~~~~~~-- 753 (986)
.++|++.|++++++..+.+............+|+... +.+... . ++ ..+..|+++.+...+.
T Consensus 395 ~~~~~~~~~~g~p~e~All~~~~~~~~~~~~~~~~~~~~~pF~s~~-k~m~v~~~~~~~~~~~~~~KGape~il~~c~~~ 473 (884)
T TIGR01522 395 KFRNEADTLLGNPTDVALIELLMKFGLDDLRETYIRVAEVPFSSER-KWMAVKCVHRQDRSEMCFMKGAYEQVLKYCTYY 473 (884)
T ss_pred eecCCCCCcCCChHHHHHHHHHHHcCcHhHHhhCcEEeEeCCCCCC-CeEEEEEEEcCCCeEEEEEeCChHHHHHhhhhh
Confidence 1359999999998775432100000111112222211 222222 1 23 2455688766654321
Q ss_pred --------CCCh----hhHHHHHHHHhccCcEEEEEECC-----EEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCC
Q 001981 754 --------PVGP----EVDDYMMKNEQLARTCVLVAIDG-----RVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGD 816 (986)
Q Consensus 754 --------~~~~----~~~~~~~~~~~~g~~~i~va~~~-----~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd 816 (986)
++++ ++.+...++..+|+|++++|++. +++|+++++|++|++++++|++||++|++++|+|||
T Consensus 474 ~~~~g~~~~l~~~~~~~i~~~~~~~a~~G~rvl~~A~~~~~~~l~~lGli~l~Dp~r~~~~~~i~~l~~~Gi~v~miTGD 553 (884)
T TIGR01522 474 QKKDGKTLTLTQQQRDVIQEEAAEMASAGLRVIAFASGPEKGQLTFLGLVGINDPPRPGVKEAVTTLITGGVRIIMITGD 553 (884)
T ss_pred hhcCCCeeeCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCCeEEEEEEeccCcchhHHHHHHHHHHHCCCeEEEECCC
Confidence 1222 23445567788999999999865 899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCc---------------------------eEEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHH
Q 001981 817 NWATANAIAKEVGIG---------------------------KVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPAL 869 (986)
Q Consensus 817 ~~~~a~~~a~~~gi~---------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al 869 (986)
+..+|.++|+++||. .+|+|++|++|.++|+.+|+.|+.|+|+|||.||+||+
T Consensus 554 ~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~~iv~~lq~~g~~v~mvGDGvND~pAl 633 (884)
T TIGR01522 554 SQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKMKIVKALQKRGDVVAMTGDGVNDAPAL 633 (884)
T ss_pred CHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHH
Confidence 999999999999996 59999999999999999999999999999999999999
Q ss_pred HhCCceEEec-CCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccCCCCCcH
Q 001981 870 VAADVGMAIG-AGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAVPIAA-GILYPFTGIRLPP 947 (986)
Q Consensus 870 ~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~la~-g~~~~~~g~~l~p 947 (986)
++|||||+|| ++++.++++||++++++++..+++++++||+++++|++|+.|.++.|+..+.+.+ +.++ |. ..|
T Consensus 634 ~~AdVGia~g~~g~~va~~aaDivl~dd~~~~i~~~i~~gR~~~~ni~k~i~~~l~~ni~~~~~~~~~~~~---~~-~~p 709 (884)
T TIGR01522 634 KLADIGVAMGQTGTDVAKEAADMILTDDDFATILSAIEEGKGIFNNIKNFITFQLSTSVAALSLIALATLM---GF-PNP 709 (884)
T ss_pred HhCCeeEecCCCcCHHHHHhcCEEEcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---cC-CCc
Confidence 9999999999 6899999999999999999999999999999999999999999999998776543 2222 22 133
Q ss_pred HHHHHHhhchhHhHhhhhhhcccCC
Q 001981 948 WLAGACMAASSLSVLCSSLLLQSYK 972 (986)
Q Consensus 948 ~~a~~~m~~ss~~v~~~s~~l~~~~ 972 (986)
+.+.-+..+.-+...+.++.|...+
T Consensus 710 l~~~qiL~inl~~d~~~a~~l~~e~ 734 (884)
T TIGR01522 710 LNAMQILWINILMDGPPAQSLGVEP 734 (884)
T ss_pred hhHHHHHHHHHHHHhhHHHHhccCC
Confidence 3333344444466666666665443
No 17
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=100.00 E-value=6.6e-77 Score=699.83 Aligned_cols=476 Identities=36% Similarity=0.489 Sum_probs=434.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhc--cCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCcccccEEEEec
Q 001981 406 ISFILLGKYLEVVAKGKTSDALAKLTD--LAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVVTDG 483 (986)
Q Consensus 406 ~~~~~~g~~le~~~~~k~~~~l~~l~~--~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaDg~vl~G 483 (986)
+++++++.+++.++++++.+.+++|.+ +.|++++++ |+| +++|++++|+|||+|+|++||+|||||+|++|
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~---r~g----~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g 75 (499)
T TIGR01494 3 LILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVL---RNG----WKEIPASDLVPGDIVLVKSGEIVPADGVLLSG 75 (499)
T ss_pred EEhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEE---ECC----eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEc
Confidence 456788999999999999999999998 899999999 666 57899999999999999999999999999999
Q ss_pred cceeeccccccCCcceecCCCCceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhhcCChHHHHHHHHH-hhHHHH
Q 001981 484 QSYVNESMITGEAKPIAKGPGDKVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQIS-RFFVPM 562 (986)
Q Consensus 484 ~~~Vdes~lTGEs~pv~k~~g~~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 562 (986)
++.||||+|||||.|+.|++|+.+++||.+.+|.+.++|+.+|.+|..+++..++++++..++++++..++++ .+++++
T Consensus 76 ~~~vdes~LTGEs~pv~k~~g~~v~~gs~~~~G~~~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~ 155 (499)
T TIGR01494 76 SCFVDESNLTGESVPVLKTAGDAVFAGTYVFNGTLIVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDRLSDIIFILF 155 (499)
T ss_pred cEEEEcccccCCCCCeeeccCCccccCcEEeccEEEEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888999999999999 899999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHHHHHhhcCeEecCchHH
Q 001981 563 VVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKGASLGVLIKGGNAL 642 (986)
Q Consensus 563 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~~~~~~~gilvk~~~~l 642 (986)
+++++++++++|++.... ..+|..++.+++++++++|||+|++++|+++..+..+++++||++|+++++
T Consensus 156 ~~~la~~~~~~~~~~~~~-----------~~~~~~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~~gilvk~~~~l 224 (499)
T TIGR01494 156 VLLIALAVFLFWAIGLWD-----------PNSIFKIFLRALILLVIAIPIALPLAVTIALAVGDARLAKKGIVVRSLNAL 224 (499)
T ss_pred HHHHHHHHHHHHHHHHcc-----------cccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHCCcEEechhhh
Confidence 999999999888664310 003667899999999999999999999999999999999999999999999
Q ss_pred hhhcCCcEEEecCCCccccCccEEEEEEecCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhcCCCCCCCccccc
Q 001981 643 EKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAEANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAKD 722 (986)
Q Consensus 643 e~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~~~~~~~~e~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~ 722 (986)
|+||++|++|||||||||+|+|++.++.+.+. +..++||+++|+++++++.. ....+
T Consensus 225 E~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~-------------~~~s~hp~~~ai~~~~~~~~----------~~~~~ 281 (499)
T TIGR01494 225 EELGKVDYICSDKTGTLTKNEMSFKKVSVLGG-------------EYLSGHPDERALVKSAKWKI----------LNVFE 281 (499)
T ss_pred hhccCCcEEEeeCCCccccCceEEEEEEecCC-------------CcCCCChHHHHHHHHhhhcC----------cceec
Confidence 99999999999999999999999999987543 46799999999999886532 12345
Q ss_pred eeeeeCCeeEEEECC--EEEEEecHHHHHhcCCCCChhhHHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHH
Q 001981 723 FEVHTGAGVSGKVGD--RTVLVGNKRLMMAFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVV 800 (986)
Q Consensus 723 ~~~~~g~g~~~~~~~--~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i 800 (986)
|+... +|+++.+++ ..+.+|+++++.+.+.. +.+...++..+|.++++++++++++|++.++|++|++++++|
T Consensus 282 f~~~~-~~~~~~~~~~~~~~~~G~~~~i~~~~~~----~~~~~~~~~~~g~~~~~~a~~~~~~g~i~l~d~lr~~~~~~i 356 (499)
T TIGR01494 282 FSSVR-KRMSVIVRGPDGTYVKGAPEFVLSRVKD----LEEKVKELAQSGLRVLAVASKETLLGLLGLEDPLRDDAKETI 356 (499)
T ss_pred cCCCC-ceEEEEEecCCcEEEeCCHHHHHHhhHH----HHHHHHHHHhCCCEEEEEEECCeEEEEEEecCCCchhHHHHH
Confidence 66666 688888764 67999999998775432 233344567789999999999999999999999999999999
Q ss_pred HHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEecC
Q 001981 801 SSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIGA 880 (986)
Q Consensus 801 ~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~ 880 (986)
+.|+++|++++|+|||+..++..+|+++|| +++++|++|.++++.+|++|+.|+|+|||.||++|+++|||||+|+
T Consensus 357 ~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi---~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~Advgia~~- 432 (499)
T TIGR01494 357 SELREAGIRVIMLTGDNVLTAKAIAKELGI---FARVTPEEKAALVEALQKKGRVVAMTGDGVNDAPALKKADVGIAMG- 432 (499)
T ss_pred HHHHHCCCeEEEEcCCCHHHHHHHHHHcCc---eeccCHHHHHHHHHHHHHCCCEEEEECCChhhHHHHHhCCCccccc-
Confidence 999999999999999999999999999997 8999999999999999999999999999999999999999999997
Q ss_pred CcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001981 881 GTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAVPIAAG 935 (986)
Q Consensus 881 ~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~la~g 935 (986)
++++||++++++++..++.++++||++++++++|+.|++.||++.+|++++
T Consensus 433 ----a~~~adivl~~~~l~~i~~~~~~~r~~~~~i~~~~~~~~~~n~~~~~~a~~ 483 (499)
T TIGR01494 433 ----AKAAADIVLLDDNLSTIVDALKEGRKTFSTIKSNIFWAIAYNLILIPLAAL 483 (499)
T ss_pred ----hHHhCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999985
No 18
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=1.3e-74 Score=722.70 Aligned_cols=550 Identities=23% Similarity=0.306 Sum_probs=451.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCccccc
Q 001981 398 FFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVD 477 (986)
Q Consensus 398 ~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaD 477 (986)
+|..++++++++++.-.++.+++.|+.+.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.|++||+||||
T Consensus 103 ~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~Vi---Rdg---~~~~I~~~~lv~GDiv~l~~Gd~IPaD 176 (997)
T TIGR01106 103 NLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVI---RDG---EKMSINAEQVVVGDLVEVKGGDRIPAD 176 (997)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE---ECC---EEEEeeHHHCCCCCEEEECCCCEEeee
Confidence 33345567777778888899999999999999999999999999 899 899999999999999999999999999
Q ss_pred EEEEecc-ceeeccccccCCcceecCCCC----------ceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhhcCC
Q 001981 478 GVVTDGQ-SYVNESMITGEAKPIAKGPGD----------KVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARA 546 (986)
Q Consensus 478 g~vl~G~-~~Vdes~lTGEs~pv~k~~g~----------~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~ 546 (986)
|+|++|+ +.||||+|||||.|+.|.+++ .+|+||.+.+|.+.++|+++|.+|.+|++.+++++++.+++
T Consensus 177 ~~il~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~ 256 (997)
T TIGR01106 177 LRIISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIASLASGLENGKT 256 (997)
T ss_pred EEEEEccCcEEEccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHHhhhhhcccCCC
Confidence 9999997 599999999999999998874 69999999999999999999999999999999999888899
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHH
Q 001981 547 PVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVAT 626 (986)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~ 626 (986)
|+++..+++++++++++++++++.+++|++.+ ..|..++.+++++++++|||+|++++++++..+.
T Consensus 257 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~ 322 (997)
T TIGR01106 257 PIAIEIEHFIHIITGVAVFLGVSFFILSLILG--------------YTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTA 322 (997)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence 99999999999999999888888887775543 1355678889999999999999999999999999
Q ss_pred HHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCC--------------CC-----HHHHHHHHHHH
Q 001981 627 GKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSH--------------FS-----MEEFCDMATAA 687 (986)
Q Consensus 627 ~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~--------------~~-----~~~~~~~~~~~ 687 (986)
.+++++|+++|+++++|+||++|+||||||||||+|+|+|.+++..+. .+ .++++.+++.+
T Consensus 323 ~~m~~~~ilvk~~~aiE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~alc 402 (997)
T TIGR01106 323 KRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTEDQSGVSFDKSSATWLALSRIAGLC 402 (997)
T ss_pred HHHHHCCcEecCcHHHHHhcCCCEEEECCCCceecCceEEEEEEECCeEEecCCccCCCCccCCcccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999874321 01 12455555554
Q ss_pred Hh----------------cCCChHHHHHHHHHHHhhhhcCC--CCCCCccccceeeeeCCeeEEEE-C---C---EEEEE
Q 001981 688 EA----------------NSEHPIAKAVVEHAKKLRQKLGS--PTEHASEAKDFEVHTGAGVSGKV-G---D---RTVLV 742 (986)
Q Consensus 688 e~----------------~s~hp~~~ai~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~g~~~~~-~---~---~~~~v 742 (986)
+. ..++|.+.|+++++...+.+... .........+|+....+...... + + ..+..
T Consensus 403 n~~~~~~~~~~~~~~~~~~~gdp~E~ALl~~a~~~~~~~~~~~~~~~~v~~~pF~s~rK~m~~v~~~~~~~~~~~~~~~K 482 (997)
T TIGR01106 403 NRAVFKAGQENVPILKRAVAGDASESALLKCIELCLGSVMEMRERNPKVVEIPFNSTNKYQLSIHENEDPRDPRHLLVMK 482 (997)
T ss_pred CCCeeccccCCCcccccccCcChHHHHHHHHHHHhCCCHHHHHhhCceeEEeccCCCCceEEEEEeccCCCCceEEEEEe
Confidence 32 13579999999998754321100 00011222344444333322221 1 1 24678
Q ss_pred ecHHHHHhcCC---------CCChh----hHHHHHHHHhccCcEEEEEE------------------------CCEEEEE
Q 001981 743 GNKRLMMAFHV---------PVGPE----VDDYMMKNEQLARTCVLVAI------------------------DGRVAGA 785 (986)
Q Consensus 743 g~~~~~~~~~~---------~~~~~----~~~~~~~~~~~g~~~i~va~------------------------~~~~~G~ 785 (986)
|+++.+.+.+. +++++ +.+...++..+|.|++++|+ |.+++|+
T Consensus 483 GApe~Il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~~a~~GlRvla~A~k~l~~~~~~~~~~~~~~~~~~~e~~L~flGl 562 (997)
T TIGR01106 483 GAPERILERCSSILIHGKEQPLDEELKEAFQNAYLELGGLGERVLGFCHLYLPDEQFPEGFQFDTDDVNFPTDNLCFVGL 562 (997)
T ss_pred CChHHHHHHhhHHhcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEEeecCcccccccccccchhhhccccCcEEEEE
Confidence 99988766432 22222 44556678889999999885 3469999
Q ss_pred EEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc----------------------------------
Q 001981 786 FAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG---------------------------------- 831 (986)
Q Consensus 786 i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~---------------------------------- 831 (986)
++++|++|++++++|++|+++|++++|+|||+..+|..+|+++|+-
T Consensus 563 i~i~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~ 642 (997)
T TIGR01106 563 ISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGS 642 (997)
T ss_pred EeccCCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhH
Confidence 9999999999999999999999999999999999999999999991
Q ss_pred -------------------eEEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEec-CCcHHHHHhcCE
Q 001981 832 -------------------KVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIG-AGTDVAIEAADI 891 (986)
Q Consensus 832 -------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~ 891 (986)
.+|+|++|+||.++|+.+|+.|+.|+|+|||.||+|||++|||||||| +|++.++++||+
T Consensus 643 ~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg~~G~~vak~aADi 722 (997)
T TIGR01106 643 DLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADM 722 (997)
T ss_pred HhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecCCcccHHHHHhhce
Confidence 199999999999999999999999999999999999999999999999 689999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccCCCCCcHHHHHHHhhchhHhHhhhhhhccc
Q 001981 892 VLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAVPIAA-GILYPFTGIRLPPWLAGACMAASSLSVLCSSLLLQS 970 (986)
Q Consensus 892 vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~la~-g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~ 970 (986)
+++++++..|++++++||+++.|+++++.|.+..|+..+.+.+ +.+ +|.+ .|+.+.-++...-+.-.+-++.|..
T Consensus 723 vL~dd~f~~Iv~ai~~GR~i~~ni~k~i~~~l~~ni~~~~~~~~~~~---~~~~-~pl~~~qlL~inli~d~lp~~al~~ 798 (997)
T TIGR01106 723 ILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFII---ANIP-LPLGTITILCIDLGTDMVPAISLAY 798 (997)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HcCc-chhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999987655443 222 2322 3444444444444666666666654
Q ss_pred C
Q 001981 971 Y 971 (986)
Q Consensus 971 ~ 971 (986)
.
T Consensus 799 e 799 (997)
T TIGR01106 799 E 799 (997)
T ss_pred C
Confidence 4
No 19
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-75 Score=656.53 Aligned_cols=521 Identities=27% Similarity=0.376 Sum_probs=420.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCcccccE
Q 001981 399 FETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVDG 478 (986)
Q Consensus 399 ~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaDg 478 (986)
|+.+..|.+++.+.-.+..++++|+.+++++|.++.|+.+.|+ |+| +.+.+++.+|+|||+|.++-||+||||.
T Consensus 78 ~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~---R~g---k~~~i~A~eLVPGDiV~l~vGDkVPADl 151 (972)
T KOG0202|consen 78 FDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVL---RSG---KLQHILARELVPGDIVELKVGDKIPADL 151 (972)
T ss_pred cccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEE---ecC---cccceehhccCCCCEEEEecCCccccce
Confidence 3333344333333333344444566699999999999999999 899 8899999999999999999999999999
Q ss_pred EEEeccc-eeeccccccCCcceecCC--------------CCceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhh
Q 001981 479 VVTDGQS-YVNESMITGEAKPIAKGP--------------GDKVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQL 543 (986)
Q Consensus 479 ~vl~G~~-~Vdes~lTGEs~pv~k~~--------------g~~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~ 543 (986)
+|++-.. .||||.|||||.|+.|.. .+.+|+||.+..|.++++|+.||.+|.+|+|.+.+.+.+.
T Consensus 152 Rl~e~~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a~GIVi~TG~nTeiG~I~~~m~~~e~ 231 (972)
T KOG0202|consen 152 RLIEAKSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGRAKGIVIGTGLNTEIGKIFKMMQATES 231 (972)
T ss_pred eEEeeeeeeeecccccCCcccccccCccccCCCCCccccceeeEeecceeecCceeEEEEeccccchHHHHHHHHhccCC
Confidence 9999766 899999999999999953 3669999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccC--CCCCcccccchhhHHHHHHHHhhhhhhhcccchhhhHHHH
Q 001981 544 ARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAG--LYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTA 621 (986)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a 621 (986)
+|+|+|+..|.+.+.+..++.++++.+++.. .+.+. .....|+ ..+...+..++++.+.+.|.+|+..+.+.
T Consensus 232 ~kTPLqk~ld~~G~qLs~~is~i~v~v~~~n--ig~f~~p~~~g~~f----k~~~~~f~IaVsLAVAAIPEGLPaVvT~t 305 (972)
T KOG0202|consen 232 PKTPLQKKLDEFGKQLSKVISFICVGVWLLN--IGHFLDPVHGGSWF----KGALYYFKIAVSLAVAAIPEGLPAVVTTT 305 (972)
T ss_pred CCCcHHHHHHHHHHHHHHHheehhhhHHHhh--hhhhccccccccch----hchhhhhhHHHHHHHHhccCCCcchhhhh
Confidence 9999999999999998877666666655441 22111 0112232 34566788999999999999999999999
Q ss_pred HHHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCC---------------------------
Q 001981 622 VMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSH--------------------------- 674 (986)
Q Consensus 622 ~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~--------------------------- 674 (986)
++.+..+|+|++.++|...++|+||.+++||.|||||||+|+|.+.+++..+.
T Consensus 306 LALG~~rMakknaIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~~~~~~~~~~f~~tg~ty~~~g~v~~~~~~ 385 (972)
T KOG0202|consen 306 LALGTRRMAKKNAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIPDGGTATVDEFNPTGTTYSPEGEVFKDGLY 385 (972)
T ss_pred HHHhHHHHHhhhhhhhcccchhhccceeEEecCCCCcccccceEEEEEEecccccccccccccCCceeCCCCceEecCcc
Confidence 99999999999999999999999999999999999999999999999887542
Q ss_pred -----CCHHHHHHHH---HHHH-----hc-------CCChHHHHHHHHHHHhhhhcCCCCCC-----------C----c-
Q 001981 675 -----FSMEEFCDMA---TAAE-----AN-------SEHPIAKAVVEHAKKLRQKLGSPTEH-----------A----S- 718 (986)
Q Consensus 675 -----~~~~~~~~~~---~~~e-----~~-------s~hp~~~ai~~~~~~~~~~~~~~~~~-----------~----~- 718 (986)
...+.+..++ +-+. ++ -+.|.+-|+...+++.+..-...... . .
T Consensus 386 ~~~~~~~~~~l~~l~~i~~lCNda~v~~~~~~~~~~~G~pTE~AL~vlaeKm~l~~~~~~~~s~~~~~~c~~~~~~~~~~ 465 (972)
T KOG0202|consen 386 EKDKAGDNDLLQELAEICALCNDATVEYNDADCYEKVGEPTEGALIVLAEKMGLPGTRSTNLSNEEASACNRVYSRLFKK 465 (972)
T ss_pred ccccccccHHHHHHHHHHHhhhhhhhhcCchhhHHhcCCchHHHHHHHHHHcCCCcchhhcccccccccchhHHHHhhhh
Confidence 0112232222 2221 11 35789999999888766422110000 0 0
Q ss_pred -cccceeeeeCCeeEEEE----C---CEEEEEecHHHHHhcC-----------CCCCh----hhHHHHHHHHhccCcEEE
Q 001981 719 -EAKDFEVHTGAGVSGKV----G---DRTVLVGNKRLMMAFH-----------VPVGP----EVDDYMMKNEQLARTCVL 775 (986)
Q Consensus 719 -~~~~~~~~~g~g~~~~~----~---~~~~~vg~~~~~~~~~-----------~~~~~----~~~~~~~~~~~~g~~~i~ 775 (986)
...+|... .+.++..+ + ..-+..|..+-+.+.+ .++++ .+.+...++..+|.|++.
T Consensus 466 ~~elpFssd-rK~Msv~c~~~~~~~~~~~fvKGA~E~Vl~rcs~~~~~~g~~~~pLt~~~re~il~~~~~~g~~gLRvLa 544 (972)
T KOG0202|consen 466 IAELPFSSD-RKSMSVKCSPAHGQSGYKMFVKGAPESVLERCSTYYGSDGQTKVPLTQASRETILANVYEMGSEGLRVLA 544 (972)
T ss_pred eeEeecccc-cceEEEEEecCCCCccceEEecCChHHHHHhhhcEEccCCceeeeCcHHHHHHHHHHHHHHhhccceEEE
Confidence 01122211 23333333 2 2456678887766633 12222 344555677889999999
Q ss_pred EEE------------------------CCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC-
Q 001981 776 VAI------------------------DGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI- 830 (986)
Q Consensus 776 va~------------------------~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi- 830 (986)
+|. |.+|+|++++.||+|++++++|+.|+++||+|+|+|||+..||.++|+++|+
T Consensus 545 lA~~~~~~~~~~~~~l~~~s~~~~~E~~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~ 624 (972)
T KOG0202|consen 545 LASKDSPGQVPDDQDLNDTSNRATAESDLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIF 624 (972)
T ss_pred EEccCCcccChhhhhhcccccccccccceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 996 5689999999999999999999999999999999999999999999999999
Q ss_pred ------------------------------ceEEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEec-
Q 001981 831 ------------------------------GKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIG- 879 (986)
Q Consensus 831 ------------------------------~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~- 879 (986)
-.+|+|++|++|.++|+.||+.|+.|+|.|||.||+|||+.||+|||||
T Consensus 625 ~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~ 704 (972)
T KOG0202|consen 625 SEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAEPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGI 704 (972)
T ss_pred cCCccccccccchhhhhcCCHHHHHHHhhcceEEEecCchhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceeecC
Confidence 1689999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001981 880 AGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAVPI 932 (986)
Q Consensus 880 ~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~l 932 (986)
+|++++|++||+||.+||++.|..++++||++++|||+.+.|.+..|+..+.+
T Consensus 705 ~GTdVaKeAsDMVL~DDnFstIvaAVEEGr~IynNik~Fir~~lSsnVgev~~ 757 (972)
T KOG0202|consen 705 SGTDVAKEASDMVLADDNFSTIVAAVEEGRAIYNNIKNFIRYLLSSNVGEVVL 757 (972)
T ss_pred CccHhhHhhhhcEEecCcHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999864433
No 20
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=1.5e-73 Score=708.71 Aligned_cols=559 Identities=23% Similarity=0.316 Sum_probs=448.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCcccc
Q 001981 397 DFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPV 476 (986)
Q Consensus 397 ~~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPa 476 (986)
.|++ ++++++++++.-.+..++++|+.+.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.|++||+|||
T Consensus 35 ~~~~-~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~Vi---Rdg---~~~~I~~~~Lv~GDiv~l~~Gd~IPa 107 (917)
T TIGR01116 35 AFVE-PFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVL---RDG---RWSVIKAKDLVPGDIVELAVGDKVPA 107 (917)
T ss_pred cHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE---ECC---EEEEEEHHHCCCCCEEEECCCCEeec
Confidence 4554 4555566666777777888888899999999999999999 899 89999999999999999999999999
Q ss_pred cEEEEecc-ceeeccccccCCcceecCCC-------------CceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHh
Q 001981 477 DGVVTDGQ-SYVNESMITGEAKPIAKGPG-------------DKVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQ 542 (986)
Q Consensus 477 Dg~vl~G~-~~Vdes~lTGEs~pv~k~~g-------------~~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~ 542 (986)
||+|++|+ +.||||+|||||.|+.|.++ +.+|+||.+.+|.+.++|+++|.+|.+|||.++++..+
T Consensus 108 D~~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~gki~~~~~~~~ 187 (917)
T TIGR01116 108 DIRVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIGKIRDEMRAAE 187 (917)
T ss_pred cEEEEEecceEEEcccccCCCCcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHHHHHHHhhccC
Confidence 99999996 79999999999999999876 78999999999999999999999999999999999988
Q ss_pred hcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhhcccchhhhHHHHH
Q 001981 543 LARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAV 622 (986)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~ 622 (986)
.+++|+|+..++++.++++++++++++.|++++.......+...|. ..+...+..++++++++|||+|++++++++
T Consensus 188 ~~~t~lq~~l~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~l~v~~iP~~Lp~~vti~l 263 (917)
T TIGR01116 188 QEDTPLQKKLDEFGELLSKVIGLICILVWVINIGHFNDPALGGGWI----QGAIYYFKIAVALAVAAIPEGLPAVITTCL 263 (917)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhH----HHHHHHHHHHHhhhhhccccccHHHHHHHH
Confidence 8999999999999999998888888777766533211000011111 234456667889999999999999999999
Q ss_pred HHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCC--------------CC------------
Q 001981 623 MVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSH--------------FS------------ 676 (986)
Q Consensus 623 ~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~--------------~~------------ 676 (986)
+.++.+++++|+++|+++++|+||++|+||||||||||+|+|++.+++..++ +.
T Consensus 264 ~~~~~~m~~~~ilvk~~~~iE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (917)
T TIGR01116 264 ALGTRKMAKKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVCKVVALDPSSSSLNEFCVTGTTYAPEGGVIKDDGPV 343 (917)
T ss_pred HHHHHHHHHCCcEecCcHHHHhccCceEEEecCCccccCCeEEEEEEEecCCcccccceEEecCCccCCCccccccCCcc
Confidence 9999999999999999999999999999999999999999999999876431 00
Q ss_pred -------HHHHHHHHHHHHh-------------cCCChHHHHHHHHHHHhhhhcCCCC------------------CCCc
Q 001981 677 -------MEEFCDMATAAEA-------------NSEHPIAKAVVEHAKKLRQKLGSPT------------------EHAS 718 (986)
Q Consensus 677 -------~~~~~~~~~~~e~-------------~s~hp~~~ai~~~~~~~~~~~~~~~------------------~~~~ 718 (986)
.++++..++.+.. ..++|.+.|+++++.+.+.+..... ....
T Consensus 344 ~~~~~~~~~~l~~~~~lc~~~~~~~~~~~~~~~~~gdp~E~ALl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (917)
T TIGR01116 344 AGGQDAGLEELATIAALCNDSSLDFNERKGVYEKVGEATEAALKVLVEKMGLPATKNGVSSKRRPALGCNSVWNDKFKKL 423 (917)
T ss_pred cccchHHHHHHHHHHHhcCCCeeeccccCCceeeccChhHHHHHHHHHHcCCCchhcccccccccccchhHHHHhhccee
Confidence 1223333332221 1258999999999887654321100 0011
Q ss_pred cccceeeeeCCeeEEEECC----EEEEEecHHHHHhcCC----------CCCh----hhHHHHHHHHh-ccCcEEEEEE-
Q 001981 719 EAKDFEVHTGAGVSGKVGD----RTVLVGNKRLMMAFHV----------PVGP----EVDDYMMKNEQ-LARTCVLVAI- 778 (986)
Q Consensus 719 ~~~~~~~~~g~g~~~~~~~----~~~~vg~~~~~~~~~~----------~~~~----~~~~~~~~~~~-~g~~~i~va~- 778 (986)
...+|+.. .+.++..+.. ..+..|+++.+.+.+. ++++ ++.+..+++.. +|.|++++|+
T Consensus 424 ~~~pF~s~-rK~msviv~~~~~~~~~~KGApe~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~~GlRvl~~A~k 502 (917)
T TIGR01116 424 ATLEFSRD-RKSMSVLCKPSTGNKLFVKGAPEGVLERCTHILNGDGRAVPLTDKMKNTILSVIKEMGTTKALRCLALAFK 502 (917)
T ss_pred eecccChh-hCeEEEEEeeCCcEEEEEcCChHHHHHhccceecCCCCeeeCCHHHHHHHHHHHHHHHhhcCCeEEEEEEE
Confidence 22344432 3445555431 3566799998877432 1222 24455677888 9999999985
Q ss_pred ----------------------CCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-----
Q 001981 779 ----------------------DGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG----- 831 (986)
Q Consensus 779 ----------------------~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~----- 831 (986)
|.+++|+++++|++|++++++|++||++|++++|+|||+..+|..+|+++|+.
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~e~~l~~lGl~~~~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~ 582 (917)
T TIGR01116 503 DIPDPREEDLLSDPANFEAIESDLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDED 582 (917)
T ss_pred ECCccccccccccchhhhhhcCCcEEEEEeeeeCCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCcc
Confidence 23789999999999999999999999999999999999999999999999994
Q ss_pred --------------------------eEEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEecCCcHHH
Q 001981 832 --------------------------KVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVA 885 (986)
Q Consensus 832 --------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~ 885 (986)
.+|+|++|++|.++++.+|+.|+.|+|+|||.||+||+++|||||+||+|++.+
T Consensus 583 v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g~g~~~a 662 (917)
T TIGR01116 583 VTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMGSGTEVA 662 (917)
T ss_pred ccceeeeHHHHhhCCHHHHHHhhhcCeEEEecCHHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECCCCcHHH
Confidence 389999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccCCCCCcHHHHHHHhhchhHhHhhh
Q 001981 886 IEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAVPIAA-GILYPFTGIRLPPWLAGACMAASSLSVLCS 964 (986)
Q Consensus 886 ~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~la~-g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~ 964 (986)
+++||+++.++++..|.+++++||++++|+++.+.|.+..|+..+.+.+ +.++ |.+ .|+.+.-+...+-+...+.
T Consensus 663 k~aAD~vl~dd~f~~i~~~i~~GR~~~~ni~k~i~~~l~~ni~~~~~~~~~~~~---~~~-~pl~~~qll~inli~d~lp 738 (917)
T TIGR01116 663 KEASDMVLADDNFATIVAAVEEGRAIYNNMKQFIRYMISSNIGEVVCIFLTAAL---GIP-EGLIPVQLLWVNLVTDGLP 738 (917)
T ss_pred HHhcCeEEccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH---cCC-chHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997655443 2222 221 3333333444444556666
Q ss_pred hhhcccC
Q 001981 965 SLLLQSY 971 (986)
Q Consensus 965 s~~l~~~ 971 (986)
++.|...
T Consensus 739 ~~~l~~~ 745 (917)
T TIGR01116 739 ATALGFN 745 (917)
T ss_pred HHHHhcC
Confidence 6666544
No 21
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=2e-73 Score=708.85 Aligned_cols=548 Identities=21% Similarity=0.266 Sum_probs=435.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCcccccEEE
Q 001981 401 TSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVV 480 (986)
Q Consensus 401 ~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaDg~v 480 (986)
.++++++++++.-.+..++..|+++++++|.++.+.+++|+ ||| ++++|++++|+|||+|.+++||+|||||+|
T Consensus 83 ~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~Vi---Rdg---~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rL 156 (1053)
T TIGR01523 83 EGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVI---RNG---KSDAIDSHDLVPGDICLLKTGDTIPADLRL 156 (1053)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE---eCC---eeeecCHhhCCCCCEEEECCCCEeeccEEE
Confidence 45666777777888888888888899999999999999999 899 899999999999999999999999999999
Q ss_pred Eecc-ceeeccccccCCcceecCCC---------------CceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhh-
Q 001981 481 TDGQ-SYVNESMITGEAKPIAKGPG---------------DKVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQL- 543 (986)
Q Consensus 481 l~G~-~~Vdes~lTGEs~pv~k~~g---------------~~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~- 543 (986)
+++. ..||||+|||||.||.|.+. +.+|+||.+.+|.+.++|++||.+|.+|+|.+++.+...
T Consensus 157 i~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g~~vVvatG~~T~~GkIa~~~~~~~~~ 236 (1053)
T TIGR01523 157 IETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIATALNSEIGAIAAGLQGDGGL 236 (1053)
T ss_pred EEeCceEEEchhhcCCCCceeccccccccccccCCcccCCCccccCceEEeeeEEEEEEEecCccHHHHHHHHHhhhhhc
Confidence 9985 59999999999999999742 468999999999999999999999999999999865431
Q ss_pred ----------------------------------cCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 001981 544 ----------------------------------ARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIP 589 (986)
Q Consensus 544 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 589 (986)
.++|+|+..++++.++..+.++++++.++...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpLq~~l~~l~~~l~~i~~~~~~~~~~~~~~------------- 303 (1053)
T TIGR01523 237 FQRPEKDDPNKRRKLNKWILKVTKKVTGAFLGLNVGTPLHRKLSKLAVILFCIAIIFAIIVMAAHKF------------- 303 (1053)
T ss_pred cccccccccccchhhhcccccccccchhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------
Confidence 248999999999998877777777666654221
Q ss_pred cchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEE
Q 001981 590 KVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSA 669 (986)
Q Consensus 590 ~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~ 669 (986)
..+...+.++++++++++|.+|++.+.++++.+..+|+++++++|+..++|+||.+++||+|||||||+|+|+|.++
T Consensus 304 ---~~~~~~~~~av~l~Va~VPegLp~~vti~La~g~~rMak~~~lVr~L~avEtLG~vtvICsDKTGTLT~N~M~V~~i 380 (1053)
T TIGR01523 304 ---DVDKEVAIYAICLAISIIPESLIAVLSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQI 380 (1053)
T ss_pred ---hhhHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCCEeccchhhhhccCccEEEecCcCccccceEEEEEE
Confidence 01234566789999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EecC-----------CCC------------------------------------------------HHHHHHHHHHHHh-
Q 001981 670 VLFS-----------HFS------------------------------------------------MEEFCDMATAAEA- 689 (986)
Q Consensus 670 ~~~~-----------~~~------------------------------------------------~~~~~~~~~~~e~- 689 (986)
+..+ ++. ..+++..++.+..
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~lcn~a 460 (1053)
T TIGR01523 381 WIPRFGTISIDNSDDAFNPNEGNVSGIPRFSPYEYSHNEAADQDILKEFKDELKEIDLPEDIDMDLFIKLLETAALANIA 460 (1053)
T ss_pred EEcCCceEEecCCCCCCCCcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHhccCC
Confidence 6421 000 0123333333321
Q ss_pred ------------cCCChHHHHHHHHHHHhhhhcC---------CC------------------CCCCccccceeeeeCCe
Q 001981 690 ------------NSEHPIAKAVVEHAKKLRQKLG---------SP------------------TEHASEAKDFEVHTGAG 730 (986)
Q Consensus 690 ------------~s~hp~~~ai~~~~~~~~~~~~---------~~------------------~~~~~~~~~~~~~~g~g 730 (986)
..++|.+.|++.++...+.+.. .. ........+|+... +.
T Consensus 461 ~~~~~~~~~~~~~~GdptE~ALl~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pFds~r-K~ 539 (1053)
T TIGR01523 461 TVFKDDATDCWKAHGDPTEIAIHVFAKKFDLPHNALTGEEDLLKSNENDQSSLSQHNEKPGSAQFEFIAEFPFDSEI-KR 539 (1053)
T ss_pred eeeccCCCCceeeCcCccHHHHHHHHHHcCCCcccccchhhhhhhccccccccccccccccccccceEEEeccCCCC-Ce
Confidence 1258999999999876553210 00 00011112333332 33
Q ss_pred eEEEEC---CE---EEEEecHHHHHhcCC-----------CCCh----hhHHHHHHHHhccCcEEEEEE-----------
Q 001981 731 VSGKVG---DR---TVLVGNKRLMMAFHV-----------PVGP----EVDDYMMKNEQLARTCVLVAI----------- 778 (986)
Q Consensus 731 ~~~~~~---~~---~~~vg~~~~~~~~~~-----------~~~~----~~~~~~~~~~~~g~~~i~va~----------- 778 (986)
++..+. +. .+..|+++.+.+.+. ++++ ++.+..+++..+|.|++++|+
T Consensus 540 msvv~~~~~~~~~~~~~KGApe~il~~c~~~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~GlRvLa~A~r~l~~~~~~~~ 619 (1053)
T TIGR01523 540 MASIYEDNHGETYNIYAKGAFERIIECCSSSNGKDGVKISPLEDCDRELIIANMESLAAEGLRVLAFASKSFDKADNNDD 619 (1053)
T ss_pred EEEEEEeCCCCEEEEEEeCChHHHHHhhhHhhcCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEEEEEECCchhccch
Confidence 444432 22 356799988876432 1222 344566778999999999985
Q ss_pred --------------CCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-------------
Q 001981 779 --------------DGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG------------- 831 (986)
Q Consensus 779 --------------~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~------------- 831 (986)
|..++|+++++|++|++++++|++||++||+++|+|||+..+|..+|+++||.
T Consensus 620 ~~~~~~~~~~~~e~~L~~~G~~~~~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~ 699 (1053)
T TIGR01523 620 QLKNETLNRATAESDLEFLGLIGIYDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMD 699 (1053)
T ss_pred hhhccccchhhhccCCEEEEEEeeecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCcccccccccccc
Confidence 34799999999999999999999999999999999999999999999999993
Q ss_pred ------------------------eEEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEec-CCcHHHH
Q 001981 832 ------------------------KVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIG-AGTDVAI 886 (986)
Q Consensus 832 ------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~ 886 (986)
.+|+|++|+||.++|+.+|++|+.|+|+|||.||+|||++|||||||| +|++.++
T Consensus 700 ~~vitG~~l~~l~~~~l~~~~~~~~V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~gt~vak 779 (1053)
T TIGR01523 700 SMVMTGSQFDALSDEEVDDLKALCLVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGINGSDVAK 779 (1053)
T ss_pred ceeeehHHhhhcCHHHHHHHhhcCeEEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEecCCCccHHHH
Confidence 289999999999999999999999999999999999999999999999 8999999
Q ss_pred HhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcc-ccCCCCCcHHHHHHHhhchhHhHhhh
Q 001981 887 EAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAVPIAA-GILY-PFTGIRLPPWLAGACMAASSLSVLCS 964 (986)
Q Consensus 887 ~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~la~-g~~~-~~~g~~l~p~~a~~~m~~ss~~v~~~ 964 (986)
++||++++++++..|.+++++||++++++++.+.|.+..|+..+.+.+ +.++ .+.|...-|+.+..+....-+.-.+-
T Consensus 780 ~aADivl~dd~f~~I~~~i~~gR~~~~ni~k~i~y~l~~ni~~i~~~~~~~~~~~~~g~~~~Pl~~~qiL~inli~d~~p 859 (1053)
T TIGR01523 780 DASDIVLSDDNFASILNAIEEGRRMFDNIMKFVLHLLAENVAEAILLIIGLAFRDENGKSVFPLSPVEILWCIMITSCFP 859 (1053)
T ss_pred HhcCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCCCcCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987655443 2222 11132212333333333333555556
Q ss_pred hhhcccC
Q 001981 965 SLLLQSY 971 (986)
Q Consensus 965 s~~l~~~ 971 (986)
++-|...
T Consensus 860 alaL~~e 866 (1053)
T TIGR01523 860 AMGLGLE 866 (1053)
T ss_pred HHhhccC
Confidence 6555543
No 22
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-74 Score=711.65 Aligned_cols=544 Identities=26% Similarity=0.345 Sum_probs=446.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCcccccEEEE
Q 001981 402 SAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVVT 481 (986)
Q Consensus 402 ~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaDg~vl 481 (986)
.+++++..++|-+.| .|+.+++++|.++.+.+++|+ ||| ++++|++++|+|||+|++++||+||||++|+
T Consensus 110 ~~~i~~n~~~g~~qe----~~a~~~l~~lk~~~~~~~~V~---R~g---~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl 179 (917)
T COG0474 110 LLVVVINALLGFVQE----YRAEKALEALKKMSSPKAKVL---RDG---KFVEIPASELVPGDIVLLEAGDVVPADLRLL 179 (917)
T ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHhhccCceEEE---eCC---cEEEecHHHCCCCcEEEECCCCccccceEEE
Confidence 344444445554444 444577778888889999999 899 9999999999999999999999999999999
Q ss_pred eccc-eeeccccccCCcceecCC--------------CCceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhhcCC
Q 001981 482 DGQS-YVNESMITGEAKPIAKGP--------------GDKVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARA 546 (986)
Q Consensus 482 ~G~~-~Vdes~lTGEs~pv~k~~--------------g~~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~ 546 (986)
++++ .||||+|||||.|+.|.+ .+.+|+||.+.+|.+.+.|++||.+|..|++..++......++
T Consensus 180 ~~~~l~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~~~~t 259 (917)
T COG0474 180 ESSDLEVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKEVKT 259 (917)
T ss_pred EecCceEEcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhccccccCC
Confidence 9999 999999999999999963 4789999999999999999999999999999999998767899
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHH
Q 001981 547 PVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVAT 626 (986)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~ 626 (986)
|+|+..+++..++..+.+++++++++..++.+. ..|..++.+++++++.++|.+|++.+.++++.+.
T Consensus 260 ~l~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~l~va~IPegLp~~vti~la~g~ 326 (917)
T COG0474 260 PLQRKLNKLGKFLLVLALVLGALVFVVGLFRGG-------------NGLLESFLTALALAVAAVPEGLPAVVTIALALGA 326 (917)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 999999999999999999999988888755431 1267889999999999999999999999999999
Q ss_pred HHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecC-CCCHH-----------HHHHHHHHHH---hc-
Q 001981 627 GKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFS-HFSME-----------EFCDMATAAE---AN- 690 (986)
Q Consensus 627 ~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~-~~~~~-----------~~~~~~~~~e---~~- 690 (986)
.+++++++++|++.++|.||++++||+|||||||+|+|+|.+++..+ ..... +++..++.+. ..
T Consensus 327 ~~mak~~~ivr~l~avE~LG~v~vICsDKTGTLTqN~M~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lc~~~~~~~ 406 (917)
T COG0474 327 QRMAKDNAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYINGGGKDIDDKDLKDSPALLRFLLAAALCNSVTPEK 406 (917)
T ss_pred HHHHhccchhhccchhhhccCccEEEecCCCCCccCeEEEEEEEeCCCcccccccccccchHHHHHHHHHHhcCcccccc
Confidence 99999999999999999999999999999999999999999999884 21111 1222222222 12
Q ss_pred -----CCChHHHHHHHHHHHhhh--hcCCCC--CCCccccceeeeeCCeeEEEEC-----CEEEEEecHHHHHhcCC---
Q 001981 691 -----SEHPIAKAVVEHAKKLRQ--KLGSPT--EHASEAKDFEVHTGAGVSGKVG-----DRTVLVGNKRLMMAFHV--- 753 (986)
Q Consensus 691 -----s~hp~~~ai~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~g~g~~~~~~-----~~~~~vg~~~~~~~~~~--- 753 (986)
..+|.+.||++++.+.+. +..... .......+|+.. .+.++..++ -..++.|+++.+.+.+.
T Consensus 407 ~~~~~~gdptE~Al~~~a~~~~~~~~~~~~~~~~~~~~~~PFdS~-rKrMsviv~~~~~~~~~~~KGApe~il~~~~~~~ 485 (917)
T COG0474 407 NGWYQAGDPTEGALVEFAEKLGFSLDLSGLEVEYPILAEIPFDSE-RKRMSVIVKTDEGKYILFVKGAPEVILERCKSIG 485 (917)
T ss_pred cCceecCCccHHHHHHHHHhcCCcCCHHHHhhhcceeEEecCCCC-ceEEEEEEEcCCCcEEEEEcCChHHHHHHhcccC
Confidence 569999999999988664 211110 011222344443 344555553 13567899998875322
Q ss_pred ---CCC----hhhHHHHHHHHhccCcEEEEEE-----------------CCEEEEEEEecCCCChhHHHHHHHHHHCCCe
Q 001981 754 ---PVG----PEVDDYMMKNEQLARTCVLVAI-----------------DGRVAGAFAVTDPVKPEAQIVVSSLRSMEIS 809 (986)
Q Consensus 754 ---~~~----~~~~~~~~~~~~~g~~~i~va~-----------------~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~ 809 (986)
+.. +.+.+..+++..+|+|++.+|+ |..++|+++++||+|++++++|+.|+++||+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~la~~glRvla~A~k~~~~~~~~~~~~~~E~dl~~lGl~g~~Dppr~~v~~aI~~l~~AGI~ 565 (917)
T COG0474 486 ELEPLTEEGLRTLEEAVKELASEGLRVLAVAYKKLDRAEKDDEVDEIESDLVFLGLTGIEDPPREDVKEAIEELREAGIK 565 (917)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhhhhccceeehhhhccCCCCccHHHHHHHHHHCCCc
Confidence 122 3466677788999999988886 4689999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHcCCc-----------------------------eEEEecCcccHHHHHHHHhHcCCEEEEEc
Q 001981 810 SIMVTGDNWATANAIAKEVGIG-----------------------------KVFAETDPVGKANKIKELQLKGMTVAMVG 860 (986)
Q Consensus 810 ~~~~Tgd~~~~a~~~a~~~gi~-----------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vG 860 (986)
++|+|||+..||..+|+++|+. .+|+|++|+||.++|+.||+.|+.|+|+|
T Consensus 566 v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~qK~~IV~~lq~~g~vVamtG 645 (917)
T COG0474 566 VWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPEQKARIVEALQKSGHVVAMTG 645 (917)
T ss_pred EEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHHHHHHHHHHHHhCCCEEEEeC
Confidence 9999999999999999999971 58999999999999999999999999999
Q ss_pred CCcccHHHHHhCCceEEec-CCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcc
Q 001981 861 DGINDSPALVAADVGMAIG-AGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAVPIA-AGILY 938 (986)
Q Consensus 861 Dg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~la-~g~~~ 938 (986)
||.||+|||++|||||+|| +|+|+++++||+++.++++..+..++.+||+++.|+++.+.+.+..|+..+.+. .+.++
T Consensus 646 DGvNDapALk~ADVGIamg~~Gtdaak~Aadivl~dd~~~~i~~av~eGR~~~~ni~k~i~~~l~~n~~~~~~~~~~~~~ 725 (917)
T COG0474 646 DGVNDAPALKAADVGIAMGGEGTDAAKEAADIVLLDDNFATIVLAVVEGRRVYVNIKKFILYLLSKNVGEVLTLLIYSLF 725 (917)
T ss_pred CCchhHHHHHhcCccEEecccHHHHHHhhcceEeecCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 699999999999999999999999999999999999999999999999844433 33332
Q ss_pred ccCCCCCcHHHHHHHhhchhHhHhhhhhhcccCC
Q 001981 939 PFTGIRLPPWLAGACMAASSLSVLCSSLLLQSYK 972 (986)
Q Consensus 939 ~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~~ 972 (986)
+....|+.+.-++...-+.-.+.++.|...+
T Consensus 726 ---~~~~~p~~~~qll~inll~d~~pa~~L~~~~ 756 (917)
T COG0474 726 ---NLFFLPLTPLQLLWINLLTDSLPALALGVED 756 (917)
T ss_pred ---hcccccHHHHHHHHHHHHHhhhhhheeecCC
Confidence 2223455555555555566677777776554
No 23
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-72 Score=632.96 Aligned_cols=573 Identities=26% Similarity=0.317 Sum_probs=462.7
Q ss_pred CcchhhhHHHHHHHH------HHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEE
Q 001981 395 GQDFFETSAMLISFI------LLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKI 468 (986)
Q Consensus 395 ~~~~~~~~~~l~~~~------~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v 468 (986)
.+.|+|.+++++.++ .+..|-..++.+ .+++. -...+..|+ ||| +.++|++.||++||++.+
T Consensus 179 ~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~----~L~~~--k~~~k~~Vi---R~G---~r~~isI~diVVGDIv~l 246 (1034)
T KOG0204|consen 179 EDGWIEGVAILLSVILVVLVTAVNDYRQELQFR----KLQKE--KRNIKFQVI---RGG---RRQQISIYDLVVGDIVQL 246 (1034)
T ss_pred CcccccchhheeeEEEEEEEeecchhHHhhhhh----hhhhh--hhceEEEEE---ECC---EEEEEEEeeeeeccEEEe
Confidence 457888877766543 234444443333 33321 123456677 899 899999999999999999
Q ss_pred cCCCcccccEEEEeccc-eeeccccccCCcceecCC--CCceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhhcC
Q 001981 469 LPGEKVPVDGVVTDGQS-YVNESMITGEAKPIAKGP--GDKVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLAR 545 (986)
Q Consensus 469 ~~Ge~IPaDg~vl~G~~-~Vdes~lTGEs~pv~k~~--g~~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~ 545 (986)
+.||.|||||++++|+. .||||++||||.++.|.+ +..+++||.+.+|.+++.|+.+|.+|..|++...+.+....+
T Consensus 247 k~GDqvPADGvli~gn~L~iDESSlTGESd~v~k~~~~dPfLlSGTkv~eGsgkMlVTaVGmnt~wG~~m~~l~~~~~e~ 326 (1034)
T KOG0204|consen 247 KIGDQVPADGVLIQGNSLKIDESSLTGESDHVQKSLDKDPFLLSGTKVMEGSGKMLVTAVGMNTQWGIIMTLLGAGGEEE 326 (1034)
T ss_pred ecCCccccceEEEeccceeEecccccCCCcceeccCCCCCeEeecceeecCcceEEEEEeeecchHhhHHHhhhcCCCcC
Confidence 99999999999999966 899999999999999987 457999999999999999999999999999999999988899
Q ss_pred ChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCC------CcccccchhhHHHHHHHHhhhhhhhcccchhhhHH
Q 001981 546 APVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYP------KHWIPKVMDEFELALQFGISVLVVACPCALGLATP 619 (986)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~ 619 (986)
+|+|-..++++.....+.+.+|++++++.++....+.+. ..|.+.....+...+..+++++++++|.+||||+.
T Consensus 327 tpLQ~kL~~lA~~Igk~Gl~~A~~~~~VL~~r~~~~~~~~~~~~~~~~~~~~~~~~v~~f~i~VTilVVAVPEGLPLAVT 406 (1034)
T KOG0204|consen 327 TPLQVKLNGLATQIGKIGLLFAALTFIVLVIRFFIGKTKIEGGTGTTWSDEYIQEFVKFFIIAVTILVVAVPEGLPLAVT 406 (1034)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeecCCCCCccccHHHHHHHHHHhhheeEEEEEECCCCccHHHH
Confidence 999999999999888888888888777654443322221 12333445677788889999999999999999999
Q ss_pred HHHHHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCCCCH----------HHHHH-HHHHHH
Q 001981 620 TAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSM----------EEFCD-MATAAE 688 (986)
Q Consensus 620 ~a~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~~~----------~~~~~-~~~~~e 688 (986)
++++.++++|.+.+.|+|..+++|++|..++||.|||||||+|+|+|.+.+..+.... ..+.. +..+..
T Consensus 407 LsLAys~kkMmkD~~LVRhL~ACETMGsAT~ICsDKTGTLT~N~MtVV~~~~~~~~~k~~~~~~~~l~~~~~~ll~~gI~ 486 (1034)
T KOG0204|consen 407 LSLAYSMKKMMKDNNLVRHLDACETMGSATAICSDKTGTLTTNRMTVVQSYIGSEHYKVNSPKSSNLPPSLLDLLLQGIA 486 (1034)
T ss_pred HHHHHHHHHHhcchhHHHHhHHHhhcCCceEEEecCcCceEeeeEEEEeeeeccccccccCcccccCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999877543211 11121 122221
Q ss_pred -----------------hcCCChHHHHHHHHHHHhhhhcCCC--CCCCccccceeeeeCC-eeEEEE-CCE--EEEEecH
Q 001981 689 -----------------ANSEHPIAKAVVEHAKKLRQKLGSP--TEHASEAKDFEVHTGA-GVSGKV-GDR--TVLVGNK 745 (986)
Q Consensus 689 -----------------~~s~hp~~~ai~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~-g~~~~~-~~~--~~~vg~~ 745 (986)
...++|.++||+.+....|.+++.. .+...++..|+....+ |+.... ++. .+..|..
T Consensus 487 ~Nt~g~v~~~~~~g~~~~~~GspTE~AlL~f~~~LG~~~~~~R~e~~v~kv~~FNS~kK~~gvvi~~~~~~~y~~~KGAs 566 (1034)
T KOG0204|consen 487 QNTTGSVVKPEKGGEQPEQLGSPTECALLGFGLKLGMDFQDVRPEEKVVKVYPFNSVKKRMGVVIKLPDGGHYVHWKGAS 566 (1034)
T ss_pred hcCCCeEEecCCCCcCccccCCHHHHHHHHHHHHhCcchHhhcchhheeEEeccCcccceeeEEEEcCCCCeEEEEcChH
Confidence 2346899999999998877665332 2234456667665433 332222 222 5667887
Q ss_pred HHHHhcCCC----------CCh----hhHHHHHHHHhccCcEEEEEE---------------------CCEEEEEEEecC
Q 001981 746 RLMMAFHVP----------VGP----EVDDYMMKNEQLARTCVLVAI---------------------DGRVAGAFAVTD 790 (986)
Q Consensus 746 ~~~~~~~~~----------~~~----~~~~~~~~~~~~g~~~i~va~---------------------~~~~~G~i~~~d 790 (986)
+.+...+.. +++ .+++.++.+..+|.|++++|| +.+++|+++++|
T Consensus 567 EiVL~~C~~~~~~~g~~~~~~e~~~~~~~~~Ie~mA~~~LRti~lAy~df~~~~~~~~~~~~~~~~~~~lt~laivGIkD 646 (1034)
T KOG0204|consen 567 EIVLKSCEYYIDSNGELVPFNEDDRKSFKDVIEPMASEGLRTICLAYRDFVAGPDEEPSWDNEELPEGGLTLLAIVGIKD 646 (1034)
T ss_pred HHHHHhhhheECCCCCEeeCCHHHHHHHHHHHHHHHHhhhheeeEEeeccccCCCCCCCccccccCCCCeEEEEEeeccC
Confidence 776653321 222 356677888999999999998 347899999999
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC-----------------------------ceEEEecCccc
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI-----------------------------GKVFAETDPVG 841 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi-----------------------------~~~~~~~~p~~ 841 (986)
|+||+++++|+.|+++|+.|.|+||||-.||+++|.++|| -.+++|-+|.|
T Consensus 647 PvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~D 726 (1034)
T KOG0204|consen 647 PVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPND 726 (1034)
T ss_pred CCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCch
Confidence 9999999999999999999999999999999999999999 16899999999
Q ss_pred HHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEec-CCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHH
Q 001981 842 KANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIG-AGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYV 920 (986)
Q Consensus 842 K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~ 920 (986)
|.-+|+.|+++|+.|+..|||.||+|||+.||||.||| .|+++++|++|+++++|+++.|++++.+||..+.+|++.+.
T Consensus 727 K~lLVk~L~~~g~VVAVTGDGTNDaPALkeADVGlAMGIaGTeVAKEaSDIIi~DDNFssIVk~v~WGR~VY~nIqKFiQ 806 (1034)
T KOG0204|consen 727 KHLLVKGLIKQGEVVAVTGDGTNDAPALKEADVGLAMGIAGTEVAKEASDIIILDDNFSSIVKAVKWGRNVYDNIQKFLQ 806 (1034)
T ss_pred HHHHHHHHHhcCcEEEEecCCCCCchhhhhcccchhccccchhhhhhhCCeEEEcCchHHHHHHHHhhhHHHHHHHHhhe
Confidence 99999999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCcHHHHHHHhhchhHhHhhhhhhcccCCCCCccccccc
Q 001981 921 WALGYNVLAVPIAAGILYPFTGIRLPPWLAGACMAASSLSVLCSSLLLQSYKKPLHIKDSKD 982 (986)
Q Consensus 921 ~~~~~n~~~i~la~g~~~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~~~~~~~~~~~~ 982 (986)
|.++.|++++.+++-... ..| =+|+-|.-+....-|.-.|-||-|...+|...--.|||
T Consensus 807 FQLTVNVvAliv~fv~A~-~~~--dsPLtAVQlLWVNLIMDTLgALALATepPt~~Lm~RkP 865 (1034)
T KOG0204|consen 807 FQLTVNVVALIVNFVSAC-ATG--DSPLTAVQLLWVNLIMDTLGALALATEPPTDELMKRKP 865 (1034)
T ss_pred eEEEEEEEeehhhhhhhh-hcC--CccHHHHHHHHHHHHHHHHHHHHhccCCCChHHhcCCC
Confidence 999999988777652111 123 38999998888888999999999886655444333443
No 24
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=1.7e-71 Score=699.22 Aligned_cols=560 Identities=22% Similarity=0.254 Sum_probs=444.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEc--CCCcc
Q 001981 397 DFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKIL--PGEKV 474 (986)
Q Consensus 397 ~~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~--~Ge~I 474 (986)
.||..++++++++++...+..++++|+.+.++++.. .|..++|+ ||| ++++|++++|+|||+|.|+ +|++|
T Consensus 191 ~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~-~~~~v~V~---Rdg---~~~~I~s~eLvpGDiv~l~~~~g~~i 263 (1054)
T TIGR01657 191 EYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH-KPQSVIVI---RNG---KWVTIASDELVPGDIVSIPRPEEKTM 263 (1054)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeeEEEE---ECC---EEEEEEcccCCCCCEEEEecCCCCEe
Confidence 455567778888888999999999999999988755 47789999 899 8999999999999999999 99999
Q ss_pred cccEEEEeccceeeccccccCCcceecCCC------------------Cceeeeeeec-------CceEEEEEEEeCCch
Q 001981 475 PVDGVVTDGQSYVNESMITGEAKPIAKGPG------------------DKVIGGTMNE-------NGCLQVKATHVGSET 529 (986)
Q Consensus 475 PaDg~vl~G~~~Vdes~lTGEs~pv~k~~g------------------~~v~aGs~~~-------~g~~~~~v~~~g~~t 529 (986)
||||+|++|++.||||+|||||.|+.|.+. +.+|+||.+. +|.+.++|++||.+|
T Consensus 264 PaD~~ll~g~~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T 343 (1054)
T TIGR01657 264 PCDSVLLSGSCIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFST 343 (1054)
T ss_pred cceEEEEeCcEEEecccccCCccceecccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcEEEEEEeCCccc
Confidence 999999999999999999999999999862 2499999997 488999999999999
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhh
Q 001981 530 ALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVA 609 (986)
Q Consensus 530 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~ 609 (986)
..|++.+.+...+..++++++...++..++. ++++++++++++.+... ..++...+.+++++++++
T Consensus 344 ~~G~i~~~i~~~~~~~~~~~~~~~~~~~~l~----~~a~i~~i~~~~~~~~~----------~~~~~~~~l~~l~iiv~~ 409 (1054)
T TIGR01657 344 SKGQLVRSILYPKPRVFKFYKDSFKFILFLA----VLALIGFIYTIIELIKD----------GRPLGKIILRSLDIITIV 409 (1054)
T ss_pred cchHHHHHhhCCCCCCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHHHhh
Confidence 9999999988777777888777666554443 33333333332222110 124667888999999999
Q ss_pred cccchhhhHHHHHHHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCCCC-------------
Q 001981 610 CPCALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFS------------- 676 (986)
Q Consensus 610 ~P~al~la~~~a~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~~------------- 676 (986)
+|++|++++++++..++.+++|+||++|++.++|.+|++|++|||||||||+|+|.+.+++..+...
T Consensus 410 vP~~LP~~~ti~l~~~~~rL~k~~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~~~~~~~~~~~~~~~~~~~~ 489 (1054)
T TIGR01657 410 VPPALPAELSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQGLSGNQEFLKIVTEDSSLK 489 (1054)
T ss_pred cCchHHHHHHHHHHHHHHHHHHCCEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEecccCccccccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999987654210
Q ss_pred HHHHHHHHHHHH-------hcCCChHHHHHHHHHHHhhhhcCCCC---------------CCC--ccccceeeeeCCeeE
Q 001981 677 MEEFCDMATAAE-------ANSEHPIAKAVVEHAKKLRQKLGSPT---------------EHA--SEAKDFEVHTGAGVS 732 (986)
Q Consensus 677 ~~~~~~~~~~~e-------~~s~hp~~~ai~~~~~~~~~~~~~~~---------------~~~--~~~~~~~~~~g~g~~ 732 (986)
...+....+.+. ...++|++.|++++............ ... ....+|+.. .+.++
T Consensus 490 ~~~~~~~~a~C~~~~~~~~~~~Gdp~E~al~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~il~~~pF~S~-~krMs 568 (1054)
T TIGR01657 490 PSITHKALATCHSLTKLEGKLVGDPLDKKMFEATGWTLEEDDESAEPTSILAVVRTDDPPQELSIIRRFQFSSA-LQRMS 568 (1054)
T ss_pred chHHHHHHHhCCeeEEECCEEecCHHHHHHHHhCCCEEECCCCcccccccccceeccCCCceEEEEEEEeecCC-CCEEE
Confidence 112222233322 23489999999997632211000000 000 011233322 23344
Q ss_pred EEEC----CE--EEEEecHHHHHhcCC--CCChhhHHHHHHHHhccCcEEEEEE---------------------CCEEE
Q 001981 733 GKVG----DR--TVLVGNKRLMMAFHV--PVGPEVDDYMMKNEQLARTCVLVAI---------------------DGRVA 783 (986)
Q Consensus 733 ~~~~----~~--~~~vg~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~i~va~---------------------~~~~~ 783 (986)
..+. ++ .+..|+++.+.+.+. ..++++.+..+++..+|+|++++|+ |..++
T Consensus 569 vvv~~~~~~~~~~~~KGApE~Il~~c~~~~~p~~~~~~~~~~a~~G~RVLalA~k~l~~~~~~~~~~~~r~~~E~~L~fl 648 (1054)
T TIGR01657 569 VIVSTNDERSPDAFVKGAPETIQSLCSPETVPSDYQEVLKSYTREGYRVLALAYKELPKLTLQKAQDLSRDAVESNLTFL 648 (1054)
T ss_pred EEEEEcCCCeEEEEEECCHHHHHHHcCCcCCChhHHHHHHHHHhcCCEEEEEEEeecCccchhhhhhccHHHHhcCceEE
Confidence 4432 22 678899999998665 4677888889999999999999996 35799
Q ss_pred EEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC---c-----------------------------
Q 001981 784 GAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI---G----------------------------- 831 (986)
Q Consensus 784 G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi---~----------------------------- 831 (986)
|+++++|++|++++++|+.||++|++++|+|||+..+|.++|+++|| +
T Consensus 649 Gli~~~d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1054)
T TIGR01657 649 GFIVFENPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQIKFEVIDSIPF 728 (1054)
T ss_pred EEEEEecCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCceEEEeecccccCCCCceEEEEecCcccc
Confidence 99999999999999999999999999999999999999999999999 1
Q ss_pred ---------------------------------------------------eEEEecCcccHHHHHHHHhHcCCEEEEEc
Q 001981 832 ---------------------------------------------------KVFAETDPVGKANKIKELQLKGMTVAMVG 860 (986)
Q Consensus 832 ---------------------------------------------------~~~~~~~p~~K~~~v~~l~~~g~~v~~vG 860 (986)
.+|+|++|+||.++|+.||+.|+.|+|+|
T Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~qK~~iV~~lq~~g~~V~m~G 808 (1054)
T TIGR01657 729 ASTQVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQKETLVELLQKLDYTVGMCG 808 (1054)
T ss_pred ccccccccCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHHHHHHHHHHHHhCCCeEEEEe
Confidence 38899999999999999999999999999
Q ss_pred CCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 001981 861 DGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAVPIAAGILYPF 940 (986)
Q Consensus 861 Dg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~la~g~~~~~ 940 (986)
||.||++||++||||||||++ + +..+||+++.+++++.++++|++||+++.++++.+.|.+.|+++..... .+++ +
T Consensus 809 DG~ND~~ALK~AdVGIam~~~-d-as~AA~f~l~~~~~~~I~~~I~eGR~~l~~~~~~~~~~~~~~~~~~~~~-~~l~-~ 884 (1054)
T TIGR01657 809 DGANDCGALKQADVGISLSEA-E-ASVAAPFTSKLASISCVPNVIREGRCALVTSFQMFKYMALYSLIQFYSV-SILY-L 884 (1054)
T ss_pred CChHHHHHHHhcCcceeeccc-c-ceeecccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-H
Confidence 999999999999999999865 3 3478999999999999999999999999999999999999998764332 2222 2
Q ss_pred CCCCCcHHHHHHHhhchhHhHhhhhhhcccCCC-CCcccccccCCC
Q 001981 941 TGIRLPPWLAGACMAASSLSVLCSSLLLQSYKK-PLHIKDSKDSSL 985 (986)
Q Consensus 941 ~g~~l~p~~a~~~m~~ss~~v~~~s~~l~~~~~-~~~~~~~~~~~~ 985 (986)
.|..++|++ ++...-++..+.++.+.+.+| +.+.+.+|+++|
T Consensus 885 ~~~~l~~~Q---~l~i~li~~~~~~l~l~~~~p~~~l~~~~P~~~l 927 (1054)
T TIGR01657 885 IGSNLGDGQ---FLTIDLLLIFPVALLMSRNKPLKKLSKERPPSNL 927 (1054)
T ss_pred ccCcCccHH---HHHHHHHHHHHHHHHHHcCCchhhcCCCCCCccc
Confidence 355667665 334444667777777766654 344566666554
No 25
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-64 Score=538.43 Aligned_cols=521 Identities=29% Similarity=0.406 Sum_probs=420.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHhhccCCCCCcchhhhHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHhccCCC-eEEEEEec
Q 001981 367 VLVALGTNAAYFYSVYIAVKALTSNTFEGQDFFETSAML-ISFILLGKYLEVVAKGKTSDALAKLTDLAPD-TAHLLTLD 444 (986)
Q Consensus 367 ~Lv~l~~~~a~~~s~~~~l~~~~~~~~~~~~~~~~~~~l-~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~-~~~v~~~~ 444 (986)
+++-+++..+.+...+.-+++. ...+..|+-...++ .+-+++..+-|..++.|...+-..|.+...+ .++++.
T Consensus 36 Fvv~vg~~lt~~l~~~~~lfg~---~~~~~~f~~~i~~~L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~l~-- 110 (681)
T COG2216 36 FVVEVGSILTTFLTIFPDLFGG---TGGSRLFNLAITIILWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLLR-- 110 (681)
T ss_pred EeehHHHHHHHHHHHhhhhcCC---CCcchhhHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhc--
Confidence 4556666555544444333321 11233444333333 3445788999999998887777777655443 345552
Q ss_pred CCCCeeeEEEeeCCCcCCCcEEEEcCCCcccccEEEEeccceeeccccccCCcceecCCC---CceeeeeeecCceEEEE
Q 001981 445 GEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVVTDGQSYVNESMITGEAKPIAKGPG---DKVIGGTMNENGCLQVK 521 (986)
Q Consensus 445 r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaDg~vl~G~~~Vdes~lTGEs~pv~k~~g---~~v~aGs~~~~g~~~~~ 521 (986)
.|| ..+.|++.+|+.||+|+|+.||.||+||.|++|.++||||.+||||.||-|.+| +.|-.||.+.+.+++++
T Consensus 111 ~~g---~~~~v~st~Lk~gdiV~V~age~IP~DGeVIeG~asVdESAITGESaPViresGgD~ssVtGgT~v~SD~l~ir 187 (681)
T COG2216 111 ADG---SIEMVPATELKKGDIVLVEAGEIIPSDGEVIEGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWLKIR 187 (681)
T ss_pred CCC---CeeeccccccccCCEEEEecCCCccCCCeEEeeeeecchhhccCCCcceeeccCCCcccccCCcEEeeeeEEEE
Confidence 347 889999999999999999999999999999999999999999999999999998 77999999999999999
Q ss_pred EEEeCCchHHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHH
Q 001981 522 ATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQF 601 (986)
Q Consensus 522 v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (986)
++....+|++.|++.+++.++.+|+|.+--..-+..-++. ++++++.+. |.+..+.+. -...+..
T Consensus 188 ita~pG~sFlDrMI~LVEgA~R~KTPNEIAL~iLL~~LTl-iFL~~~~Tl--~p~a~y~~g------------~~~~i~~ 252 (681)
T COG2216 188 ITANPGETFLDRMIALVEGAERQKTPNEIALTILLSGLTL-IFLLAVATL--YPFAIYSGG------------GAASVTV 252 (681)
T ss_pred EEcCCCccHHHHHHHHhhchhccCChhHHHHHHHHHHHHH-HHHHHHHhh--hhHHHHcCC------------CCcCHHH
Confidence 9999999999999999999999999977444333222221 111111111 111111100 0123445
Q ss_pred HhhhhhhhcccchhhhHHHHHHHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCCCCHHHHH
Q 001981 602 GISVLVVACPCALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFC 681 (986)
Q Consensus 602 ~i~vlv~~~P~al~la~~~a~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~~ 681 (986)
.++++++..|-.++--.+--=..++.|..+.+++-++++++|..|++|++++|||||+|.|+-.-.++++.++.+.+++.
T Consensus 253 LiALlV~LIPTTIGgLLsAIGIAGMdRv~~~NViA~SGRAVEaaGDvdtliLDKTGTIT~GnR~A~~f~p~~gv~~~~la 332 (681)
T COG2216 253 LVALLVCLIPTTIGGLLSAIGIAGMDRVTQFNVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQASEFIPVPGVSEEELA 332 (681)
T ss_pred HHHHHHHHhcccHHHHHHHhhhhhhhHhhhhceeecCcchhhhcCCccEEEecccCceeecchhhhheecCCCCCHHHHH
Confidence 68888999999887655554456788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhhhcCCCCCC-CccccceeeeeCCeeEEEE--CCEEEEEecHHHH----HhcCCC
Q 001981 682 DMATAAEANSEHPIAKAVVEHAKKLRQKLGSPTEH-ASEAKDFEVHTGAGVSGKV--GDRTVLVGNKRLM----MAFHVP 754 (986)
Q Consensus 682 ~~~~~~e~~s~hp~~~ai~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~g~~~~~--~~~~~~vg~~~~~----~~~~~~ 754 (986)
..+...+-..+.|-.++|+..+++.+......... ..+..+|.... .+++.- +++++..|..+-+ .+.+-.
T Consensus 333 ~aa~lsSl~DeTpEGrSIV~LA~~~~~~~~~~~~~~~~~fvpFtA~T--RmSGvd~~~~~~irKGA~dai~~~v~~~~g~ 410 (681)
T COG2216 333 DAAQLASLADETPEGRSIVELAKKLGIELREDDLQSHAEFVPFTAQT--RMSGVDLPGGREIRKGAVDAIRRYVRERGGH 410 (681)
T ss_pred HHHHHhhhccCCCCcccHHHHHHHhccCCCcccccccceeeecceec--ccccccCCCCceeecccHHHHHHHHHhcCCC
Confidence 99999999999999999999999887543222111 12233444332 233322 3478999986654 445566
Q ss_pred CChhhHHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE
Q 001981 755 VGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVF 834 (986)
Q Consensus 755 ~~~~~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~ 834 (986)
.|++++...++.++.|.+.+.|+.|++++|++.++|-++|+.+|-+.+||++|++.+|+||||+.+|..+|++.|+|++.
T Consensus 411 ~p~~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfi 490 (681)
T COG2216 411 IPEDLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFI 490 (681)
T ss_pred CCHHHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHH
Q 001981 835 AETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTI 912 (986)
Q Consensus 835 ~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~ 912 (986)
++.+||+|.++|++-|.+|+-|+|+|||.||+|||.+||||+||.+|++.++|+++.|-++.|...+.+.+++|++..
T Consensus 491 AeatPEdK~~~I~~eQ~~grlVAMtGDGTNDAPALAqAdVg~AMNsGTqAAkEAaNMVDLDS~PTKlievV~IGKqlL 568 (681)
T COG2216 491 AEATPEDKLALIRQEQAEGRLVAMTGDGTNDAPALAQADVGVAMNSGTQAAKEAANMVDLDSNPTKLIEVVEIGKQLL 568 (681)
T ss_pred hcCChHHHHHHHHHHHhcCcEEEEcCCCCCcchhhhhcchhhhhccccHHHHHhhcccccCCCccceehHhhhhhhhe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999864
No 26
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-64 Score=561.85 Aligned_cols=512 Identities=24% Similarity=0.352 Sum_probs=415.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCcccccEEE
Q 001981 401 TSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVV 480 (986)
Q Consensus 401 ~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaDg~v 480 (986)
.+++++..+.+.-....++..|+.+.++.+.++.|..++|+ ||| +...+..++|++||++.++-||+||||.++
T Consensus 128 ~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~Vi---Rdg---~k~~i~~eelVvGD~v~vk~GdrVPADiRi 201 (1019)
T KOG0203|consen 128 LGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVI---RDG---EKMTINAEELVVGDLVEVKGGDRVPADIRI 201 (1019)
T ss_pred EEEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheee---ecc---eeEEechhhcccccceeeccCCcccceeEE
Confidence 34444444444555566777888899999999999999999 999 899999999999999999999999999999
Q ss_pred Eeccc-eeeccccccCCcceecCC----------CCceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhhcCChHH
Q 001981 481 TDGQS-YVNESMITGEAKPIAKGP----------GDKVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQ 549 (986)
Q Consensus 481 l~G~~-~Vdes~lTGEs~pv~k~~----------g~~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~ 549 (986)
+++.. ++|+|+|||||+|..+.+ .|.-|.+|.+.+|.+++.|.++|.+|.+|+|..+.......++|++
T Consensus 202 is~~g~~vdnsslTGesEP~~~~~~~t~~~~~Et~Ni~f~st~~veG~~~givi~tGd~Tv~G~ia~l~~~~~~~~t~~~ 281 (1019)
T KOG0203|consen 202 ISATGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTGRGIVIATGDRTVMGRIASLASGLEDGKTPIA 281 (1019)
T ss_pred EEecceeEeccccccccCCccCCccccccCchhheeeeeeeeEEecceEEEEEEecCCceEEeehhhhhccCCCCCCcch
Confidence 99987 999999999999999987 3678999999999999999999999999999999988888999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHHHHH
Q 001981 550 KLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKG 629 (986)
Q Consensus 550 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~~~~ 629 (986)
+.++++..+.....+.+++..|++.+..++ .|..++.+.+++++..+|.+|+..+...+....+++
T Consensus 282 ~ei~~fi~~it~vAi~~~i~fF~~~~~~gy--------------~~l~avv~~i~iivAnvPeGL~~tvTv~LtltakrM 347 (1019)
T KOG0203|consen 282 KEIEHFIHIITGVAIFLGISFFILALILGY--------------EWLRAVVFLIGIIVANVPEGLLATVTVCLTLTAKRM 347 (1019)
T ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHhhcc--------------hhHHHhhhhheeEEecCcCCccceehhhHHHHHHHH
Confidence 999999988877777777777766554442 466777789999999999999999999999999999
Q ss_pred hhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCCC-------------------CHHHHHHHHHHHHh-
Q 001981 630 ASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHF-------------------SMEEFCDMATAAEA- 689 (986)
Q Consensus 630 ~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~-------------------~~~~~~~~~~~~e~- 689 (986)
+++++++||.++.|.||...+||.|||||||+++|.|.+++..+++ +..++.+.+.-+..
T Consensus 348 a~Knc~vknLeavetlGsts~I~SDktGTlTqnrMtVahlw~d~~i~~~d~~~~~~~~~~~~~~~~~~~l~r~~~lCn~a 427 (1019)
T KOG0203|consen 348 ARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHLWFDNQIHEADTTEDQSGQSFDKSSATFIALSRIATLCNRA 427 (1019)
T ss_pred hhceeEEeeeeheeecccceeEeecceeeEEecceEEEeeccCCceeeeechhhhhcccccccCchHHHHHHHHHHhCcc
Confidence 9999999999999999999999999999999999999999886542 12233444333322
Q ss_pred ---------------cCCChHHHHHHHHHHHhhhhcCCCCCCCccc--cceeeeeCCeeEEEE-----CCE--EEEEecH
Q 001981 690 ---------------NSEHPIAKAVVEHAKKLRQKLGSPTEHASEA--KDFEVHTGAGVSGKV-----GDR--TVLVGNK 745 (986)
Q Consensus 690 ---------------~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~g~~~~~-----~~~--~~~vg~~ 745 (986)
-.+++.+.|+++++..........+.....+ .+|++....-++... +.+ .+..|.+
T Consensus 428 ~~~~gq~dvPv~kk~v~G~~se~ALlk~~e~~~~~~~~~R~~~~kv~eipfNSt~Kyqlsih~~~d~~~~~~~l~mKGap 507 (1019)
T KOG0203|consen 428 VFKPGQDDVPVLKRDVAGDASEVALLKFIELILGSVMELRERNPKVAEIPFNSTNKYQLSIHETEDPSDPRFLLVMKGAP 507 (1019)
T ss_pred eecccccCCceeeeeccCCHHHHHHHHHHHHhcchHHHHHHhhHHhhcCCcccccceEEEEEecCCCCCccceeeecCCh
Confidence 1357888999998764332210000000111 122222222221111 112 3444887
Q ss_pred HHHHhcCC---------CCChh----hHHHHHHHHhccCcEEEEEE------------------------CCEEEEEEEe
Q 001981 746 RLMMAFHV---------PVGPE----VDDYMMKNEQLARTCVLVAI------------------------DGRVAGAFAV 788 (986)
Q Consensus 746 ~~~~~~~~---------~~~~~----~~~~~~~~~~~g~~~i~va~------------------------~~~~~G~i~~ 788 (986)
+.+.+.+- +++++ +.+....+...|.+++.+++ +..|+|++++
T Consensus 508 e~il~~CSTi~i~g~e~pld~~~~~~f~~ay~~lg~~GerVlgF~~~~l~~~~~p~~~~f~~d~~n~p~~nl~FlGl~s~ 587 (1019)
T KOG0203|consen 508 ERILDRCSTILINGEEKPLDEKLKEAFQEAYLELGGLGERVLGFCDLELPDEKFPRGFQFDTDDVNFPTDNLRFLGLISM 587 (1019)
T ss_pred HHHHhhccceeecCCCCCcCHHHHHHHHHHHHHhhhcchHHHHHHHHhcchhcCCCceEeecCCCCCcchhccccchhhc
Confidence 77655321 23322 33334444555666554432 6789999999
Q ss_pred cCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC--------------------------------------
Q 001981 789 TDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI-------------------------------------- 830 (986)
Q Consensus 789 ~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi-------------------------------------- 830 (986)
-||+|..+++++.++|.+||+++|+|||++.+|+++|+..||
T Consensus 588 idPPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~ 667 (1019)
T KOG0203|consen 588 IDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELP 667 (1019)
T ss_pred cCCCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheeeecCCchhhhhhHHhcCCcccccCccccceEEEeccccc
Confidence 999999999999999999999999999999999999999997
Q ss_pred ---------------ceEEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEec-CCcHHHHHhcCEEEe
Q 001981 831 ---------------GKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIG-AGTDVAIEAADIVLI 894 (986)
Q Consensus 831 ---------------~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~ad~vl~ 894 (986)
+-+|+|-+|+||+-||+.+|++|..|+..|||.||+|||+.|||||||| .|+|+++++||++|+
T Consensus 668 ~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAMGiaGSDvsKqAADmILL 747 (1019)
T KOG0203|consen 668 DMSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILL 747 (1019)
T ss_pred ccCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceeeccccchHHHhhcceEEe
Confidence 2589999999999999999999999999999999999999999999999 799999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001981 895 KSSLEDVVTAIDLSRKTISRIRLNYVWALGYNVLAVPI 932 (986)
Q Consensus 895 ~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~~i~l 932 (986)
++++..|+..+++||-+|+|.|+.++|.++.|+--|.-
T Consensus 748 DDNFASIVtGVEEGRLiFDNLKKsIAYTLTsNipEI~P 785 (1019)
T KOG0203|consen 748 DDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITP 785 (1019)
T ss_pred cCcchhheeecccceehhhhHHHHHHHHHHhcchhHhH
Confidence 99999999999999999999999999999999876543
No 27
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-61 Score=525.77 Aligned_cols=513 Identities=22% Similarity=0.310 Sum_probs=417.5
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCC
Q 001981 392 TFEGQDFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPG 471 (986)
Q Consensus 392 ~~~~~~~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G 471 (986)
+..+++|-|. ..+.+++++...+....+..+-++...|+.-...++.|+ ||| +|.+++++.|+||||+.++.|
T Consensus 91 ~~~~~DW~DF-~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVl---RDG---kw~E~eAs~lVPGDIlsik~G 163 (942)
T KOG0205|consen 91 GGRPPDWQDF-VGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVL---RDG---KWSEQEASILVPGDILSIKLG 163 (942)
T ss_pred CCCCcchhhh-hhhheeeeecceeeeeeccccchHHHHHHhccCcccEEe---ecC---eeeeeeccccccCceeeeccC
Confidence 3445666554 344455555554444455555566677766666777888 899 999999999999999999999
Q ss_pred CcccccEEEEeccc-eeeccccccCCcceecCCCCceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhhcCChHHH
Q 001981 472 EKVPVDGVVTDGQS-YVNESMITGEAKPIAKGPGDKVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQK 550 (986)
Q Consensus 472 e~IPaDg~vl~G~~-~Vdes~lTGEs~pv~k~~g~~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~ 550 (986)
++|||||++++|+- .||+|.|||||.|+.|++||.+|+||.+.+|++.++|+.||..|+.|+-..++.. -.....+|+
T Consensus 164 dIiPaDaRLl~gD~LkiDQSAlTGESLpvtKh~gd~vfSgSTcKqGE~eaVViATg~~TF~GkAA~LVds-t~~~GHFqk 242 (942)
T KOG0205|consen 164 DIIPADARLLEGDPLKIDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQK 242 (942)
T ss_pred CEecCccceecCCccccchhhhcCCccccccCCCCceecccccccceEEEEEEEeccceeehhhHHhhcC-CCCcccHHH
Confidence 99999999999997 7999999999999999999999999999999999999999999999999999988 567788999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhh-cccchhhhHHHHHHHHHHHH
Q 001981 551 LADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVA-CPCALGLATPTAVMVATGKG 629 (986)
Q Consensus 551 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~-~P~al~la~~~a~~~~~~~~ 629 (986)
....+..+++..+.+..++.+.+-|... ... +.-....+.++++. +|.++|..+.+.++++..++
T Consensus 243 VLt~IGn~ci~si~~g~lie~~vmy~~q-------------~R~-~r~~i~nLlvllIGgiPiamPtVlsvTMAiGs~rL 308 (942)
T KOG0205|consen 243 VLTGIGNFCICSIALGMLIEITVMYPIQ-------------HRL-YRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRL 308 (942)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhhhhhh-------------hhh-hhhhhhheheeeecccccccceeeeehhhHHHHHH
Confidence 9999988876655543333333211111 011 22233445666665 99999999999999999999
Q ss_pred hhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEE--E-EecCCCCHHHHHHHHHHHHh-cCCChHHHHHHHHHHH
Q 001981 630 ASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVS--A-VLFSHFSMEEFCDMATAAEA-NSEHPIAKAVVEHAKK 705 (986)
Q Consensus 630 ~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~--~-~~~~~~~~~~~~~~~~~~e~-~s~hp~~~ai~~~~~~ 705 (986)
+++|.++|...++|.++.+|++|.|||||||.|++++.+ + ...++.+.++++-.++.+.+ ...+.+++|++...++
T Consensus 309 aqqgAItkrmtAIEemAGmdVLCSDKTGTLTlNkLSvdknl~ev~v~gv~~D~~~L~A~rAsr~en~DAID~A~v~~L~d 388 (942)
T KOG0205|consen 309 SQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDDVLLTAARASRKENQDAIDAAIVGMLAD 388 (942)
T ss_pred HhcccHHHHHHHHHHhhCceEEeecCcCceeecceecCcCcceeeecCCChHHHHHHHHHHhhhcChhhHHHHHHHhhcC
Confidence 999999999999999999999999999999999999998 5 34577888888877766654 4567899999987654
Q ss_pred hhhhcCCCCCCCccccceeeeeCCeeEEEE--CC--EEEEEecHHHHHhc---CCCCChhhHHHHHHHHhccCcEEEEEE
Q 001981 706 LRQKLGSPTEHASEAKDFEVHTGAGVSGKV--GD--RTVLVGNKRLMMAF---HVPVGPEVDDYMMKNEQLARTCVLVAI 778 (986)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~--~~--~~~~vg~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~i~va~ 778 (986)
........ ...+..+|+....+-.-.++ +| .++..|.+.++.+. ..++++...+.++++..+|.|.+.|++
T Consensus 389 PKeara~i--kevhF~PFnPV~Krta~ty~d~dG~~~r~sKGAPeqil~l~~~~~~i~~~vh~~id~~AeRGlRSLgVAr 466 (942)
T KOG0205|consen 389 PKEARAGI--KEVHFLPFNPVDKRTALTYIDPDGNWHRVSKGAPEQILKLCNEDHDIPERVHSIIDKFAERGLRSLAVAR 466 (942)
T ss_pred HHHHhhCc--eEEeeccCCccccceEEEEECCCCCEEEecCCChHHHHHHhhccCcchHHHHHHHHHHHHhcchhhhhhh
Confidence 32211010 22233345444333333333 23 35667999988763 345777888889999999999999997
Q ss_pred CC-------------EEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC---------------
Q 001981 779 DG-------------RVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI--------------- 830 (986)
Q Consensus 779 ~~-------------~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi--------------- 830 (986)
.. +++|++-+-||+|.+..++|++-...|..|.|+|||....++..++++|.
T Consensus 467 q~v~e~~~~~~g~pw~~~gllp~fdpprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrlgmgtnmypss~llG~~~ 546 (942)
T KOG0205|consen 467 QEVPEKTKESPGGPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGLGK 546 (942)
T ss_pred hccccccccCCCCCcccccccccCCCCccchHHHHHHHHhccceeeeecchHHHHHHhhhhhhccccCcCCchhhccCCC
Confidence 42 78999999999999999999999999999999999999999999999998
Q ss_pred ---------------ceEEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeC
Q 001981 831 ---------------GKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIK 895 (986)
Q Consensus 831 ---------------~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~ 895 (986)
.+-|+.+.|++|.++|+.||+.|+.|.|.|||.||+|+++.||+||++..++|.++.++|+|++.
T Consensus 547 ~~~~~~~~v~elie~adgfAgVfpehKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigiava~atdaar~asdiVlte 626 (942)
T KOG0205|consen 547 DGSMPGSPVDELIEKADGFAGVFPEHKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTE 626 (942)
T ss_pred CCCCCCCcHHHHhhhccCccccCHHHHHHHHHHHhhcCceecccCCCcccchhhcccccceeeccchhhhcccccEEEcC
Confidence 25688899999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001981 896 SSLEDVVTAIDLSRKTISRIRLNYVWALGYNVL 928 (986)
Q Consensus 896 ~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n~~ 928 (986)
+.++.+..++..||.++++++....+++...+-
T Consensus 627 pglSviI~avltSraIfqrmknytiyavsitir 659 (942)
T KOG0205|consen 627 PGLSVIISAVLTSRAIFQRMKNYTIYAVSITIR 659 (942)
T ss_pred CCchhhHHHHHHHHHHHHHHhhheeeeehhHHH
Confidence 999999999999999999999987777665543
No 28
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-59 Score=531.59 Aligned_cols=514 Identities=23% Similarity=0.295 Sum_probs=400.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcC-CCcc
Q 001981 396 QDFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILP-GEKV 474 (986)
Q Consensus 396 ~~~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~-Ge~I 474 (986)
..|+.+++.++++...+..+..+..++.+..++++... +..++|+ ||| .+++|++++|+|||++.+.+ |-..
T Consensus 211 d~Y~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~-~~~V~V~---R~g---~~~ti~S~eLVPGDil~i~~~~~~~ 283 (1140)
T KOG0208|consen 211 DSYYYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKF-TCPVTVI---RDG---FWETVDSSELVPGDILYIPPPGKIM 283 (1140)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEE---ECC---EEEEEeccccccccEEEECCCCeEe
Confidence 45666777888888888888888888888888887665 4678888 889 99999999999999999998 9999
Q ss_pred cccEEEEeccceeeccccccCCcceecCC-------------------CCceeeeeeec------CceEEEEEEEeCCch
Q 001981 475 PVDGVVTDGQSYVNESMITGEAKPIAKGP-------------------GDKVIGGTMNE------NGCLQVKATHVGSET 529 (986)
Q Consensus 475 PaDg~vl~G~~~Vdes~lTGEs~pv~k~~-------------------g~~v~aGs~~~------~g~~~~~v~~~g~~t 529 (986)
|||+++++|+|.||||+|||||.|+.|.| .+.+|+||.+. ++...+.|.+||..|
T Consensus 284 PcDa~Li~g~civNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~r~~~g~~v~a~V~RTGF~T 363 (1140)
T KOG0208|consen 284 PCDALLISGDCIVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNSRHTLFCGTKVLQARAYLGGPVLAMVLRTGFST 363 (1140)
T ss_pred ecceEEEeCcEEeecccccCCcccccccCCccccccCcCeeechhhcCcceeeccceEEEeecCCCCceEEEEEeccccc
Confidence 99999999999999999999999999987 25689999875 478999999999999
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhh
Q 001981 530 ALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVA 609 (986)
Q Consensus 530 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~ 609 (986)
..|++.+.+-..+.....+-+. +-.|+....++|++.|++-.+..... ..++...+.+++.++.+.
T Consensus 364 ~KGqLVRsilyPkP~~fkfyrd----s~~fi~~l~~ia~~gfiy~~i~l~~~----------g~~~~~iiirsLDliTi~ 429 (1140)
T KOG0208|consen 364 TKGQLVRSILYPKPVNFKFYRD----SFKFILFLVIIALIGFIYTAIVLNLL----------GVPLKTIIIRSLDLITIV 429 (1140)
T ss_pred cccHHHHhhcCCCCcccHHHHH----HHHHHHHHHHHHHHHHHHHhHhHHHc----------CCCHHHHhhhhhcEEEEe
Confidence 9999888776543222222222 22333344444555554432221111 124556788999999999
Q ss_pred cccchhhhHHHHHHHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCCC--------------
Q 001981 610 CPCALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSHF-------------- 675 (986)
Q Consensus 610 ~P~al~la~~~a~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~~-------------- 675 (986)
+|+||+.+..+++..+.+|+.|+||++-++..+...|++|++|||||||||+..+.+..+.+..+-
T Consensus 430 VPPALPAaltvG~~~a~~RLkkk~IfCisP~rIn~~G~i~~~cFDKTGTLTEdGLDl~gv~~~~~~~~~~~~~~~~~~~~ 509 (1140)
T KOG0208|consen 430 VPPALPAALTVGIIYAQSRLKKKGIFCISPQRINLCGKLNLVCFDKTGTLTEDGLDLWGVVPVERNVDDGPELKVVTEDS 509 (1140)
T ss_pred cCCCchhhhhHHHHHHHHHHHhcCeEEcCccceeecceeeEEEEcCCCcccccceeEEEEEeccccccccchhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999988874320
Q ss_pred --------------CHHHHHHHHHHHH-------hcCCChHHHHHHHHHHHhhhh----------cC-------CCCCC-
Q 001981 676 --------------SMEEFCDMATAAE-------ANSEHPIAKAVVEHAKKLRQK----------LG-------SPTEH- 716 (986)
Q Consensus 676 --------------~~~~~~~~~~~~e-------~~s~hp~~~ai~~~~~~~~~~----------~~-------~~~~~- 716 (986)
....+....+.+. ...++|++..+.+...+.-.+ .. ++...
T Consensus 510 ~~~~~~l~~~~~~~~~~~~~~a~atCHSL~~v~g~l~GDPLdlkmfe~t~w~~ee~~~~~~~~~~~~~~~p~v~~p~~~~ 589 (1140)
T KOG0208|consen 510 LQLFYKLSLRSSSLPMGNLVAAMATCHSLTLVDGTLVGDPLDLKMFESTGWVYEEADIEDEATREFNTLIPTVVRPPENA 589 (1140)
T ss_pred ccceeeccccccCCchHHHHHHHhhhceeEEeCCeeccCceeeeeeeccceEEEeccccchhhhhhCCccCCEeCCCccc
Confidence 0001111111111 112456665555432221100 00 00000
Q ss_pred ---Cc--------cccceeeee-CCeeEEEEC------CEEEEEecHHHHHhcCCC--CChhhHHHHHHHHhccCcEEEE
Q 001981 717 ---AS--------EAKDFEVHT-GAGVSGKVG------DRTVLVGNKRLMMAFHVP--VGPEVDDYMMKNEQLARTCVLV 776 (986)
Q Consensus 717 ---~~--------~~~~~~~~~-g~g~~~~~~------~~~~~vg~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~i~v 776 (986)
.. ....|+..+ -+.|+..+. -..+..|+++.+.+.+.+ +|.++++.++.+..+|+|++++
T Consensus 590 ~~~~t~~~~~~~si~k~feF~S~LrRMSVIv~~~~e~~~~~ftKGaPE~I~~ic~p~tvP~dy~evl~~Yt~~GfRVIAl 669 (1140)
T KOG0208|consen 590 FNQSTECGEGEISIVKQFEFSSALRRMSVIVSTGGEDKMMVFTKGAPESIAEICKPETVPADYQEVLKEYTHQGFRVIAL 669 (1140)
T ss_pred ccCCCcCCCcceEEEEecccchhhheEEEEEecCCCCceEeeccCCHHHHHHhcCcccCCccHHHHHHHHHhCCeEEEEE
Confidence 00 000011000 133443331 135777999999997765 5889999999999999999999
Q ss_pred EE---------------------CCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC-----
Q 001981 777 AI---------------------DGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI----- 830 (986)
Q Consensus 777 a~---------------------~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi----- 830 (986)
|. |.+++|+|.|++++|++++.+|++|++++|+++|+||||..||..+||++|+
T Consensus 670 A~K~L~~~~~~~~~~~~Rd~vEs~l~FlGLiVmeNkLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeCgmi~p~~ 749 (1140)
T KOG0208|consen 670 ASKELETSTLQKAQKLSRDTVESNLEFLGLIVMENKLKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKECGMIEPQV 749 (1140)
T ss_pred ecCccCcchHHHHhhccHhhhhccceeeEEEEeecccccccHHHHHHHHhhcceEEEEcCCchheeeehhhcccccCCCC
Confidence 97 6799999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 001981 831 -------------------------------------------------------------------------------- 830 (986)
Q Consensus 831 -------------------------------------------------------------------------------- 830 (986)
T Consensus 750 ~v~~~~~~~~~~~~~~~i~w~~ve~~~~~~~~~~~~~~~~~~~~~~d~~~~~~yhlA~sG~~f~~i~~~~~~l~~~Il~~ 829 (1140)
T KOG0208|consen 750 KVIIPELEPPEDDSIAQIVWLCVESQTQFLDPKEPDPDLASVKLSLDVLSEKDYHLAMSGKTFQVILEHFPELVPKILLK 829 (1140)
T ss_pred eEEEEeccCCccCCCceeEEEEccCccccCCCCccCccccCCccChhhhccceeEEEecCchhHHHHhhcHHHHHHHHhc
Confidence
Q ss_pred ceEEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHHHHHH
Q 001981 831 GKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRK 910 (986)
Q Consensus 831 ~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~ 910 (986)
-.+|+||+|+||.++|+.||+.|..|.|+|||.||+.||++||+||+.+.+ +|.-+|.+.-...+++.++++|++||.
T Consensus 830 ~~VfARMsP~qK~~Lie~lQkl~y~VgfCGDGANDCgALKaAdvGISLSea--EASvAApFTSk~~~I~cVp~vIrEGRa 907 (1140)
T KOG0208|consen 830 GTVFARMSPDQKAELIEALQKLGYKVGFCGDGANDCGALKAADVGISLSEA--EASVAAPFTSKTPSISCVPDVIREGRA 907 (1140)
T ss_pred CeEEeecCchhHHHHHHHHHhcCcEEEecCCCcchhhhhhhcccCcchhhh--hHhhcCccccCCCchhhHhHHHhhhhh
Confidence 169999999999999999999999999999999999999999999999743 455578888777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001981 911 TISRIRLNYVWALGYNVLAVPI 932 (986)
Q Consensus 911 ~~~~i~~n~~~~~~~n~~~i~l 932 (986)
.+-+-...+.|...|.++-...
T Consensus 908 ALVTSf~~FkYMalYs~iqFis 929 (1140)
T KOG0208|consen 908 ALVTSFACFKYMALYSAIQFIS 929 (1140)
T ss_pred hhhhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999876543
No 29
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=100.00 E-value=2.2e-58 Score=582.63 Aligned_cols=553 Identities=18% Similarity=0.186 Sum_probs=415.7
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCC-CCeeeEEEeeCCCcCCCcEEEEcCCCc
Q 001981 395 GQDFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGE-GNVISEMDINTQLMQKNDIIKILPGEK 473 (986)
Q Consensus 395 ~~~~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~-g~~~~~~~i~~~~l~~GDii~v~~Ge~ 473 (986)
+..++...++++++..+++++|++.++|+++.++ ++.++|+ |+ | .+++|++++|+|||+|+|++||+
T Consensus 50 ~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~n------~~~~~v~---~~~~---~~~~i~~~~l~~GDiv~l~~g~~ 117 (1057)
T TIGR01652 50 RGTSIVPLAFVLIVTAIKEAIEDIRRRRRDKEVN------NRLTEVL---EGHG---QFVEIPWKDLRVGDIVKVKKDER 117 (1057)
T ss_pred ccHhHHhHHHHHHHHHHHHHHHHHHHHHhHHHHh------CcEEEEE---CCCC---cEEEeeeecccCCCEEEEcCCCc
Confidence 3455555666667788999999999999887654 4788888 65 7 78899999999999999999999
Q ss_pred ccccEEEEe-----ccceeeccccccCCcceecCCC--------------------------------------------
Q 001981 474 VPVDGVVTD-----GQSYVNESMITGEAKPIAKGPG-------------------------------------------- 504 (986)
Q Consensus 474 IPaDg~vl~-----G~~~Vdes~lTGEs~pv~k~~g-------------------------------------------- 504 (986)
||||++|++ |.+.||||.|||||.|+.|++.
T Consensus 118 iPaD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~ 197 (1057)
T TIGR01652 118 IPADLLLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKMLDEDDIKNFSGEIECEQPNASLYSFQGNMTINGDRQYP 197 (1057)
T ss_pred ccceEEEEeccCCCceEEEEeeccCCeecceEeecchhhhccCChhhHhhceEEEEEcCCCCcceEEEEEEEECCCCccc
Confidence 999999997 7789999999999999998641
Q ss_pred ----CceeeeeeecC-ceEEEEEEEeCCchHHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 001981 505 ----DKVIGGTMNEN-GCLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGV 579 (986)
Q Consensus 505 ----~~v~aGs~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 579 (986)
+.++.||.+.+ |++.+.|++||.+|.+++. ....+.+++++++..+++..+++.+.++++++.+++..++..
T Consensus 198 l~~~N~l~rGs~l~nt~~~~gvVvyTG~~Tk~~~n---~~~~~~k~s~le~~ln~~~~~l~~~~i~l~~i~~i~~~~~~~ 274 (1057)
T TIGR01652 198 LSPDNILLRGCTLRNTDWVIGVVVYTGHDTKLMRN---ATQAPSKRSRLEKELNFLIIILFCLLFVLCLISSVGAGIWND 274 (1057)
T ss_pred CCHHHhHhcCCEecCCCeEEEEEEEEchhhhhhhc---CCCCcccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHheec
Confidence 45778888888 8999999999999988763 334456779999999999988777777777766665333221
Q ss_pred cCCCCCcc-cc------cchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHH------HHHhhc----CeEecCchHH
Q 001981 580 AGLYPKHW-IP------KVMDEFELALQFGISVLVVACPCALGLATPTAVMVAT------GKGASL----GVLIKGGNAL 642 (986)
Q Consensus 580 ~~~~~~~~-~~------~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~------~~~~~~----gilvk~~~~l 642 (986)
.. ....| .. .....+...+..++.++....|.+|+..+.++..... .++.++ ++++|+.+..
T Consensus 275 ~~-~~~~~yl~~~~~~~~~~~~~~~~~~~~~~L~~~~IPisL~v~l~l~~~~~~~~i~~D~~m~~~~~~~~~~vr~~~~~ 353 (1057)
T TIGR01652 275 AH-GKDLWYIRLDVSERNAAANGFFSFLTFLILFSSLIPISLYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLN 353 (1057)
T ss_pred cc-CCCccceecCcccccchhHHHHHHHHHHHHHhhhcceeeeehHHHHHHHHHHHHhhhhhhhccccCCcceeecCCCh
Confidence 00 01112 10 0012344567778889999999999999999988877 667764 5999999999
Q ss_pred hhhcCCcEEEecCCCccccCccEEEEEEecCC-----CC-----------------------------------------
Q 001981 643 EKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSH-----FS----------------------------------------- 676 (986)
Q Consensus 643 e~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~-----~~----------------------------------------- 676 (986)
|+||++++||+|||||||+|+|.++++...+. ..
T Consensus 354 E~LG~v~~I~sDKTGTLT~N~M~~~~~~i~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (1057)
T TIGR01652 354 EELGQVEYIFSDKTGTLTQNIMEFKKCSIAGVSYGDGFTEIKDAIRERLGSYVENENSMLVESKGFTFVDPRLVDLLKTN 433 (1057)
T ss_pred HHhcCeeEEEEcCCCceeeeeEEEEEEEECCEEecCCcchHHHHhhhcccccccccccccccccccccCcHHHHHhhhcC
Confidence 99999999999999999999999999864321 00
Q ss_pred ------HHHHHHHHHHHH--------h-------cCCChHHHHHHHHHHHhhhhcCCCCC----------------CCcc
Q 001981 677 ------MEEFCDMATAAE--------A-------NSEHPIAKAVVEHAKKLRQKLGSPTE----------------HASE 719 (986)
Q Consensus 677 ------~~~~~~~~~~~e--------~-------~s~hp~~~ai~~~~~~~~~~~~~~~~----------------~~~~ 719 (986)
..+++..++.|. . .+++|.+.|++++++..|..+..... ....
T Consensus 434 ~~~~~~~~~~l~~l~lC~~v~~~~~~~~~~~~~y~~~sp~E~ALl~~a~~~g~~~~~~~~~~~~~~i~~~~~~~~~~il~ 513 (1057)
T TIGR01652 434 KPNAKRINEFFLALALCHTVVPEFNDDGPEEITYQAASPDEAALVKAARDVGFVFFERTPKSISLLIEMHGETKEYEILN 513 (1057)
T ss_pred CchhHHHHHHHHHHHhcCcccccccCCCCCceEEEccCCcHHHHHHHHHHCCCEEEEecCCceEEEEEeCCCEEEEEEEE
Confidence 012222222111 1 14689999999999887654321110 0011
Q ss_pred ccceeeeeCCeeEEEEC---C--EEEEEecHHHHHhcCCC----CChhhHHHHHHHHhccCcEEEEEE------------
Q 001981 720 AKDFEVHTGAGVSGKVG---D--RTVLVGNKRLMMAFHVP----VGPEVDDYMMKNEQLARTCVLVAI------------ 778 (986)
Q Consensus 720 ~~~~~~~~g~g~~~~~~---~--~~~~vg~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~i~va~------------ 778 (986)
..+|+.. .+.++..+. + ..+..|+++.+...... ..+++.+..+++..+|.|++++|+
T Consensus 514 ~~pF~s~-rKrmSviv~~~~~~~~l~~KGA~e~il~~~~~~~~~~~~~~~~~~~~~a~~GlRtL~~A~k~l~~~e~~~~~ 592 (1057)
T TIGR01652 514 VLEFNSD-RKRMSVIVRNPDGRIKLLCKGADTVIFKRLSSGGNQVNEETKEHLENYASEGLRTLCIAYRELSEEEYEEWN 592 (1057)
T ss_pred ecccCCC-CCeEEEEEEeCCCeEEEEEeCcHHHHHHHhhccchhHHHHHHHHHHHHHHcCCcEEEEEEEECCHHHHHHHH
Confidence 2233333 234555553 2 24567998887764332 234466677889999999999985
Q ss_pred --------------------------CCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-
Q 001981 779 --------------------------DGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG- 831 (986)
Q Consensus 779 --------------------------~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~- 831 (986)
|.+++|+++++|++|++++++|+.||++||++||+|||+..+|..+|+++|+-
T Consensus 593 ~~~~~a~~~~~~r~~~~~~~~~~iE~~L~~lG~~gieD~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~ 672 (1057)
T TIGR01652 593 EEYNEASTALTDREEKLDVVAESIEKDLILLGATAIEDKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLS 672 (1057)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhcCEEEEEEEEhhhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCC
Confidence 56899999999999999999999999999999999999999999999888860
Q ss_pred -------------------------------------------------------------------------eEEEecC
Q 001981 832 -------------------------------------------------------------------------KVFAETD 838 (986)
Q Consensus 832 -------------------------------------------------------------------------~~~~~~~ 838 (986)
.+++|++
T Consensus 673 ~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~s 752 (1057)
T TIGR01652 673 RNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVS 752 (1057)
T ss_pred CCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhhccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCC
Confidence 1789999
Q ss_pred cccHHHHHHHHhHc-CCEEEEEcCCcccHHHHHhCCceEEecCCc-HHHHHhcCEEEeCCChhHHHHHH-HHHHHHHHHH
Q 001981 839 PVGKANKIKELQLK-GMTVAMVGDGINDSPALVAADVGMAIGAGT-DVAIEAADIVLIKSSLEDVVTAI-DLSRKTISRI 915 (986)
Q Consensus 839 p~~K~~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vgia~~~~~-~~~~~~ad~vl~~~~~~~l~~~i-~~~r~~~~~i 915 (986)
|+||.++|+.+|+. |+.|+|+|||.||++|+++|||||++.+.. ..++.+||+++. ++..+.+++ ..||.+++++
T Consensus 753 P~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~AdVGIgi~g~eg~qA~~aaD~~i~--~F~~L~~lll~~GR~~~~r~ 830 (1057)
T TIGR01652 753 PSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEADVGVGISGKEGMQAVMASDFAIG--QFRFLTKLLLVHGRWSYKRI 830 (1057)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhhcCeeeEecChHHHHHHHhhhhhhh--hHHHHHHHHHhhCHHHHHHH
Confidence 99999999999998 999999999999999999999999884322 257889999996 499999987 7799999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhc-cccCCCCCcHHHHHHHhhchhHhHhhhhhhc
Q 001981 916 RLNYVWALGYNVLAVPIAA-GIL-YPFTGIRLPPWLAGACMAASSLSVLCSSLLL 968 (986)
Q Consensus 916 ~~n~~~~~~~n~~~i~la~-g~~-~~~~g~~l~p~~a~~~m~~ss~~v~~~s~~l 968 (986)
++.+.|.+.-|++.+.+.+ +.+ ..|.| .+|+.....+....+.-.+.++.+
T Consensus 831 ~~~i~~~~~kn~~~~~~~~~~~~~~~~s~--~~~~~~~~l~~~n~~~t~lp~~~l 883 (1057)
T TIGR01652 831 SKMILYFFYKNLIFAIIQFWYSFYNGFSG--QTLYEGWYMVLYNVFFTALPVISL 883 (1057)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999986654433 222 12223 234444444444445555555444
No 30
>PLN03190 aminophospholipid translocase; Provisional
Probab=100.00 E-value=1.1e-51 Score=515.14 Aligned_cols=548 Identities=18% Similarity=0.168 Sum_probs=396.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCccc
Q 001981 396 QDFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVP 475 (986)
Q Consensus 396 ~~~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IP 475 (986)
..++...++++++..++..+|++.++|+++.++ ++.++++ ++| .++++++++|++||+|+|++||+||
T Consensus 137 ~t~~~PL~~vl~v~~ike~~Ed~~r~k~d~~~N------~~~~~v~---~~~---~~~~i~~~~i~vGDiv~v~~ge~iP 204 (1178)
T PLN03190 137 GASILPLAFVLLVTAVKDAYEDWRRHRSDRIEN------NRLAWVL---VDD---QFQEKKWKDIRVGEIIKIQANDTLP 204 (1178)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc------CcEEEEE---ECC---eEEEEeHHHCCCCCEEEECCCCEee
Confidence 345555667777788999999999999998764 4678888 678 7889999999999999999999999
Q ss_pred ccEEEEe-----ccceeeccccccCCcceecCCCC---------------------------------------------
Q 001981 476 VDGVVTD-----GQSYVNESMITGEAKPIAKGPGD--------------------------------------------- 505 (986)
Q Consensus 476 aDg~vl~-----G~~~Vdes~lTGEs~pv~k~~g~--------------------------------------------- 505 (986)
|||+|++ |.++||||.||||+.|+.|.+++
T Consensus 205 aD~~ll~Ss~~~G~~~Vdts~LdGEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~Pn~~l~~F~G~i~~~~~~~~l~~~n 284 (1178)
T PLN03190 205 CDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETLSKIPEKEKINGLIKCEKPNRNIYGFQANMEVDGKRLSLGPSN 284 (1178)
T ss_pred eeEEEEeccCCCceEEEEccccCCeeeeeEecccchhhhcchhhhhceEEEEEeCCCccceeEEEEEEECCCcccCCccc
Confidence 9999998 88999999999999999997642
Q ss_pred ceeeeeeecCc-eEEEEEEEeCCchHHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCC--
Q 001981 506 KVIGGTMNENG-CLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGL-- 582 (986)
Q Consensus 506 ~v~aGs~~~~g-~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 582 (986)
.++.|+.+.+. .+.+.|++||.+|.+.. .......+++++++..+++..+++.+.++++++++++..++.....
T Consensus 285 ~llRG~~LrnT~~i~GvVVYTG~dTK~~~---N~~~~~~K~S~le~~~N~~vi~l~~i~~~l~~i~~i~~~~~~~~~~~~ 361 (1178)
T PLN03190 285 IILRGCELKNTAWAIGVAVYCGRETKAML---NNSGAPSKRSRLETRMNLEIIILSLFLIALCTIVSVCAAVWLRRHRDE 361 (1178)
T ss_pred eeeccceecCCceEEEEEEEechhhhHhh---cCCCCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 23344444443 69999999999998433 2233345779999999999988777777777766655322211000
Q ss_pred -CCCcccc------c-----chhh----HHHHHHHHhhhhhhhcccchhhhHHHHHHHHHHHHhhc----------CeEe
Q 001981 583 -YPKHWIP------K-----VMDE----FELALQFGISVLVVACPCALGLATPTAVMVATGKGASL----------GVLI 636 (986)
Q Consensus 583 -~~~~~~~------~-----~~~~----~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~~~~~~~----------gilv 636 (986)
+...|.. . .... +...+...+.++...+|.+|...+.+........+.+. ++.+
T Consensus 362 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~lil~~~~IPISL~Vtleivk~~qa~~I~~D~~m~~~~~~~~~~v 441 (1178)
T PLN03190 362 LDTIPFYRRKDFSEGGPKNYNYYGWGWEIFFTFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDDQMYDEASNSRFQC 441 (1178)
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhhcceeeeeeHHHHHHHHHHHHHhhhhcccccCCCccee
Confidence 0001110 0 0000 12223333455568899999999999886645444433 3789
Q ss_pred cCchHHhhhcCCcEEEecCCCccccCccEEEEEEecC------C---------C--------------------------
Q 001981 637 KGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFS------H---------F-------------------------- 675 (986)
Q Consensus 637 k~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~------~---------~-------------------------- 675 (986)
|+.+..|+||+|++||+|||||||+|+|.++++...+ . +
T Consensus 442 r~snl~EeLGqV~yIfSDKTGTLT~N~M~fk~~~i~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1178)
T PLN03190 442 RALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSDGRTPTQNDHAGYSVEVDGKILRPKMKVKVDPQLLELSK 521 (1178)
T ss_pred ccCcchhhhccceEEEEcCCCccccceEEEEEEEECCEEcccccccchhhhhccccccccccccccccccCCHHHHhhhh
Confidence 9999999999999999999999999999999986521 0 0
Q ss_pred ---C-H-----HHHHHHHHHH--------H-----------hcCCChHHHHHHHHHHHhhhhcCCCC-------------
Q 001981 676 ---S-M-----EEFCDMATAA--------E-----------ANSEHPIAKAVVEHAKKLRQKLGSPT------------- 714 (986)
Q Consensus 676 ---~-~-----~~~~~~~~~~--------e-----------~~s~hp~~~ai~~~~~~~~~~~~~~~------------- 714 (986)
. . .+++...+.| + ..+++|.+.|++.++...|..+....
T Consensus 522 ~~~~~~~~~~i~~fl~~lalChtv~~~~~~~~~~~~~~~~~Y~a~SPdE~ALv~~a~~~G~~l~~r~~~~i~i~~~~~~~ 601 (1178)
T PLN03190 522 SGKDTEEAKHVHDFFLALAACNTIVPIVVDDTSDPTVKLMDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIHGERQ 601 (1178)
T ss_pred ccccchhhHHHHHHHHHHHhcCCceeeccCCCCCccccceEEecCCCcHHHHHHHHHHCCCeEecccCCeEEEeecccee
Confidence 0 0 1122222211 0 12348999999999998876321110
Q ss_pred -CCCccccceeeeeCCeeEEEEC---C--EEEEEecHHHHHhcCCC-----CChhhHHHHHHHHhccCcEEEEEE-----
Q 001981 715 -EHASEAKDFEVHTGAGVSGKVG---D--RTVLVGNKRLMMAFHVP-----VGPEVDDYMMKNEQLARTCVLVAI----- 778 (986)
Q Consensus 715 -~~~~~~~~~~~~~g~g~~~~~~---~--~~~~vg~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~i~va~----- 778 (986)
.......+|+.. .+.++..+. + ..+..|+++.+.+.... ..++..+..+++..+|.|++++|+
T Consensus 602 ~~~il~~~pF~S~-rKrMSvIv~~~~~~~~l~~KGA~e~il~~~~~~~~~~~~~~~~~~l~~~a~~GlRtL~lA~k~l~~ 680 (1178)
T PLN03190 602 RFNVLGLHEFDSD-RKRMSVILGCPDKTVKVFVKGADTSMFSVIDRSLNMNVIRATEAHLHTYSSLGLRTLVVGMRELND 680 (1178)
T ss_pred cceeEEEeccccc-ccEEEEEEEcCCCcEEEEEecCcHHHHHhhcccccchhHHHHHHHHHHHHhcCCceEEEEEEeCCH
Confidence 011122344433 345555553 2 24567998887764422 233456777889999999999874
Q ss_pred ---------------------------------CCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 001981 779 ---------------------------------DGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIA 825 (986)
Q Consensus 779 ---------------------------------~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a 825 (986)
|.+++|+++++|++|++++++|+.|+++|++++|+|||+..+|..+|
T Consensus 681 ~e~~~~~~~~~~a~~~~~~r~~~l~~~~~~iE~dL~~lG~~~~~D~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA 760 (1178)
T PLN03190 681 SEFEQWHFSFEAASTALIGRAALLRKVASNVENNLTILGASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIG 760 (1178)
T ss_pred HHHhhHHHHHHHhhhhhhhhHHHHHhhHHhhhcCcEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999
Q ss_pred HHcCC---------------------------------------------------------------------------
Q 001981 826 KEVGI--------------------------------------------------------------------------- 830 (986)
Q Consensus 826 ~~~gi--------------------------------------------------------------------------- 830 (986)
+.+|+
T Consensus 761 ~s~~Ll~~~~~~i~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVIdG~~L~~~l~~~~~~~f~ 840 (1178)
T PLN03190 761 YSSKLLTNKMTQIIINSNSKESCRKSLEDALVMSKKLTTVSGISQNTGGSSAAASDPVALIIDGTSLVYVLDSELEEQLF 840 (1178)
T ss_pred HHhCCCCCCCeeEEecCCchhhHHHHHHHHhhhhhhccccccccccccccccccCCceEEEEEcHHHHHHhhhHHHHHHH
Confidence 74443
Q ss_pred ------c-eEEEecCcccHHHHHHHHhHc-CCEEEEEcCCcccHHHHHhCCceEEecCCcH--HHHHhcCEEEeCCChhH
Q 001981 831 ------G-KVFAETDPVGKANKIKELQLK-GMTVAMVGDGINDSPALVAADVGMAIGAGTD--VAIEAADIVLIKSSLED 900 (986)
Q Consensus 831 ------~-~~~~~~~p~~K~~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vgia~~~~~~--~~~~~ad~vl~~~~~~~ 900 (986)
. .+++|++|+||.++|+.+|+. ++.|+|+|||.||++|+++|||||++. |.+ .|..+||+.+ ..+..
T Consensus 841 ~l~~~~~~VI~cR~sP~QKa~IV~~vk~~~~~vtlaIGDGaNDv~mIq~AdVGIGIs-G~EG~qA~~aSDfaI--~~Fr~ 917 (1178)
T PLN03190 841 QLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADVGVGIS-GQEGRQAVMASDFAM--GQFRF 917 (1178)
T ss_pred HHHHhCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEECCCcchHHHHHhcCeeeeec-CchhHHHHHhhccch--hhhHH
Confidence 0 168999999999999999987 578999999999999999999999864 333 5677999999 55999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccccCCCCCcHHHHH-HHh----hchhHhHhhhh
Q 001981 901 VVTAID-LSRKTISRIRLNYVWALGYNVLAVPIAA--GILYPFTGIRLPPWLAG-ACM----AASSLSVLCSS 965 (986)
Q Consensus 901 l~~~i~-~~r~~~~~i~~n~~~~~~~n~~~i~la~--g~~~~~~g~~l~p~~a~-~~m----~~ss~~v~~~s 965 (986)
+.+++. .||..++++..-+.|.+.-|++....-+ +++..|.| .++.-. .++ .+.|+.++.-+
T Consensus 918 L~rLLlvHGr~~y~R~s~~i~y~fYKN~~~~~~qf~f~~~~~fSg---~~ly~~~~~~~yN~~fTslPii~~~ 987 (1178)
T PLN03190 918 LVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTCFTL---TTAINEWSSVLYSVIYTALPTIVVG 987 (1178)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999886 6999999999999999999987654432 34433444 332222 122 34666666654
No 31
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-49 Score=440.99 Aligned_cols=465 Identities=23% Similarity=0.244 Sum_probs=340.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcC---CCc
Q 001981 397 DFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILP---GEK 473 (986)
Q Consensus 397 ~~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~---Ge~ 473 (986)
+||-.+.+-++++..-+.--.+++.|+...++.+ ...|....|. |++ +|+.+.+++|.|||+|.|.. ...
T Consensus 215 eyWYySlFtLfMli~fE~tlV~Qrm~~lse~R~M-g~kpy~I~v~---R~k---KW~~l~seeLlPgDvVSI~r~~ed~~ 287 (1160)
T KOG0209|consen 215 EYWYYSLFTLFMLIAFEATLVKQRMRTLSEFRTM-GNKPYTINVY---RNK---KWVKLMSEELLPGDVVSIGRGAEDSH 287 (1160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEEE---ecC---cceeccccccCCCceEEeccCcccCc
Confidence 3443333333333333333335555555555553 4557777888 788 89999999999999999987 568
Q ss_pred ccccEEEEeccceeeccccccCCcceecCC-------------C----Cceeeeeeec-------------CceEEEEEE
Q 001981 474 VPVDGVVTDGQSYVNESMITGEAKPIAKGP-------------G----DKVIGGTMNE-------------NGCLQVKAT 523 (986)
Q Consensus 474 IPaDg~vl~G~~~Vdes~lTGEs~pv~k~~-------------g----~~v~aGs~~~-------------~g~~~~~v~ 523 (986)
||||-+++.|+|.|||+||||||.|..|.+ + ..+|+||.+. +|-+.+.|.
T Consensus 288 vPCDllLL~GsciVnEaMLtGESvPl~KE~Ie~~~~d~~ld~~~d~k~hVlfGGTkivQht~p~~~slk~pDggc~a~Vl 367 (1160)
T KOG0209|consen 288 VPCDLLLLRGSCIVNEAMLTGESVPLMKESIELRDSDDILDIDRDDKLHVLFGGTKIVQHTPPKKASLKTPDGGCVAYVL 367 (1160)
T ss_pred CCceEEEEecceeechhhhcCCCccccccccccCChhhhcccccccceEEEEcCceEEEecCCccccccCCCCCeEEEEE
Confidence 999999999999999999999999999987 2 2489999764 688999999
Q ss_pred EeCCchHHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHh
Q 001981 524 HVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGI 603 (986)
Q Consensus 524 ~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 603 (986)
+||.+|.-|++.+.+-....+-+.- ++=+.+|+.+.+++|+++..+.+.-|. . ....+-+.-+.-.+
T Consensus 368 rTGFeTSQGkLvRtilf~aervTaN----n~Etf~FILFLlVFAiaAa~Yvwv~Gs--k-------d~~RsrYKL~LeC~ 434 (1160)
T KOG0209|consen 368 RTGFETSQGKLVRTILFSAERVTAN----NRETFIFILFLLVFAIAAAGYVWVEGS--K-------DPTRSRYKLFLECT 434 (1160)
T ss_pred eccccccCCceeeeEEecceeeeec----cHHHHHHHHHHHHHHHHhhheEEEecc--c-------Ccchhhhheeeeee
Confidence 9999999999876654433332221 122333444444444433322111111 0 01112223334456
Q ss_pred hhhhhhcccchhhhHHHHHHHHHHHHhhcCeEecCchHHhhhcCCcEEEecCCCccccCccEEEEEEecCC---------
Q 001981 604 SVLVVACPCALGLATPTAVMVATGKGASLGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPEVVSAVLFSH--------- 674 (986)
Q Consensus 604 ~vlv~~~P~al~la~~~a~~~~~~~~~~~gilvk~~~~le~lg~i~~i~fDKTGTLT~g~~~v~~~~~~~~--------- 674 (986)
-++...+|..|++-..+|+..++..++|.||+|..|-.+.-.|++|.-|||||||||+..|.|..+--.+.
T Consensus 435 LIlTSVvPpELPmELSmAVNsSL~ALak~~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag~~~~~~~~~~~s 514 (1160)
T KOG0209|consen 435 LILTSVVPPELPMELSMAVNSSLIALAKLGVYCTEPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAGLSADEGALTPAS 514 (1160)
T ss_pred EEEeccCCCCCchhhhHHHHHHHHHHHHhceeecCccccccCCceeEEEecCCCccccccEEEEecccccCCcccccchh
Confidence 67778899999999999999999999999999999999999999999999999999999999998765322
Q ss_pred -CCHHHHHHHHHH--HH----hcCCChHHHHHHHHHHHhhhhcCCCCCCCccccceeeeeC---------CeeEEEECC-
Q 001981 675 -FSMEEFCDMATA--AE----ANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHTG---------AGVSGKVGD- 737 (986)
Q Consensus 675 -~~~~~~~~~~~~--~e----~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------~g~~~~~~~- 737 (986)
.+.+.+..++.+ +. .-.++|+++|.++...+.-...+............+.+.. +.+.+..++
T Consensus 515 ~~p~~t~~vlAscHsLv~le~~lVGDPlEKA~l~~v~W~~~k~~~v~p~~~~~~~lkI~~ryhFsSaLKRmsvva~~~~~ 594 (1160)
T KOG0209|consen 515 KAPNETVLVLASCHSLVLLEDKLVGDPLEKATLEAVGWNLEKKNSVCPREGNGKKLKIIQRYHFSSALKRMSVVASHQGP 594 (1160)
T ss_pred hCCchHHHHHHHHHHHHHhcCcccCChHHHHHHHhcCcccccCcccCCCcCCCcccchhhhhhHHHHHHHHHhhhhcccC
Confidence 122333333333 22 3457999999998864432221111101111111111111 111111111
Q ss_pred ------EEEEEecHHHHHhcCCCCChhhHHHHHHHHhccCcEEEEEE---------------------CCEEEEEEEecC
Q 001981 738 ------RTVLVGNKRLMMAFHVPVGPEVDDYMMKNEQLARTCVLVAI---------------------DGRVAGAFAVTD 790 (986)
Q Consensus 738 ------~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~---------------------~~~~~G~i~~~d 790 (986)
-.-..|.++-+.+.-.++|..+++..+++.++|.|++++++ |..|.|++.|.-
T Consensus 595 g~s~k~~~aVKGAPEvi~~ml~dvP~dY~~iYk~ytR~GsRVLALg~K~l~~~~~~q~rd~~Re~vEsdLtFaGFlif~C 674 (1160)
T KOG0209|consen 595 GSSEKYFVAVKGAPEVIQEMLRDVPKDYDEIYKRYTRQGSRVLALGYKPLGDMMVSQVRDLKREDVESDLTFAGFLIFSC 674 (1160)
T ss_pred CCceEEEEEecCCHHHHHHHHHhCchhHHHHHHHHhhccceEEEEecccccccchhhhhhhhhhhhhhcceeeeeEEEeC
Confidence 12335889988887778899999999999999999999987 678999999999
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC----------------------------------------
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI---------------------------------------- 830 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi---------------------------------------- 830 (986)
|++++++++|+.|++.+++++|+|||++.||.++|+++||
T Consensus 675 PlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp~~p~~~~~~ 754 (1160)
T KOG0209|consen 675 PLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIVLPLKPGKKKTL 754 (1160)
T ss_pred CCCccHHHHHHHHhccCceEEEEeCCCccchheehheeeeeccCceeeccCccCCCceeeEecCCCceeecCCCCccchh
Confidence 9999999999999999999999999999999999999999
Q ss_pred -----------------------------ceEEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCceEEecCC
Q 001981 831 -----------------------------GKVFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVAADVGMAIGAG 881 (986)
Q Consensus 831 -----------------------------~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~ 881 (986)
..+|+|+.|.||..+|..|++.|+.++|+|||.||+.||++|+||||.=++
T Consensus 755 l~~~~dlcitG~~l~~l~~~~~l~~l~~hv~VfARvaP~QKE~ii~tlK~~Gy~TLMCGDGTNDVGALK~AhVGVALL~~ 834 (1160)
T KOG0209|consen 755 LAETHDLCITGSALDHLQATDQLRRLIPHVWVFARVAPKQKEFIITTLKKLGYVTLMCGDGTNDVGALKQAHVGVALLNN 834 (1160)
T ss_pred hhhhhhhhcchhHHHHHhhhHHHHHhhhheeEEEeeChhhHHHHHHHHHhcCeEEEEecCCCcchhhhhhcccceehhcC
Confidence 158999999999999999999999999999999999999999999998543
No 32
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-44 Score=395.52 Aligned_cols=494 Identities=19% Similarity=0.232 Sum_probs=367.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCccc
Q 001981 396 QDFFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVP 475 (986)
Q Consensus 396 ~~~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IP 475 (986)
..|+...++++++.++...+|+..|++.++..+. +...++. |+| ....|+++|++||+|.++.+++||
T Consensus 129 ~ty~~pl~fvl~itl~keavdd~~r~~rd~~~Ns------e~y~~lt--r~~----~~~~~Ss~i~vGDvi~v~K~~RVP 196 (1051)
T KOG0210|consen 129 STYWGPLGFVLTITLIKEAVDDLKRRRRDRELNS------EKYTKLT--RDG----TRREPSSDIKVGDVIIVHKDERVP 196 (1051)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhheeec--cCC----cccccccccccccEEEEecCCcCC
Confidence 4677778889999999999999999887766554 3334553 666 233499999999999999999999
Q ss_pred ccEEEEe-----ccceeeccccccCCcceecCC-----------------------------------------------
Q 001981 476 VDGVVTD-----GQSYVNESMITGEAKPIAKGP----------------------------------------------- 503 (986)
Q Consensus 476 aDg~vl~-----G~~~Vdes~lTGEs~pv~k~~----------------------------------------------- 503 (986)
||.++++ |++.|-+-.|+||+....|-|
T Consensus 197 ADmilLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l~~~~el~~i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~Lsv 276 (1051)
T KOG0210|consen 197 ADMILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHLTEDSELMEISVYAEKPQKDIHSFVGTFTITDSDKPESLSV 276 (1051)
T ss_pred cceEEEEccCCCCceEEeccccCCcccceeeccchhhccCCcccchheEEEeccCcchhhHhhEEEEEEecCCCCCcccc
Confidence 9999994 788999999999998776644
Q ss_pred CCceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCC
Q 001981 504 GDKVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLY 583 (986)
Q Consensus 504 g~~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 583 (986)
.+.++++|++.+|.+.+.|.+||.+|.-.- .-..++.+-..++..++.+.+++...+++++++.... .|.
T Consensus 277 entLWanTVvAs~t~~gvVvYTG~dtRsvM---Nts~pr~KvGllelEiN~ltKiL~~~vlvLs~vmv~~---~g~---- 346 (1051)
T KOG0210|consen 277 ENTLWANTVVASGTAIGVVVYTGRDTRSVM---NTSRPRSKVGLLELEINGLTKILFCFVLVLSIVMVAM---KGF---- 346 (1051)
T ss_pred cceeeeeeeEecCcEEEEEEEecccHHHHh---ccCCcccccceeeeecccHHHHHHHHHHHHHHHHHHh---hcC----
Confidence 367999999999999999999999995421 1122223334566778888888888888877765443 221
Q ss_pred CCcccccchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHHHHHhh----cCeEecCchHHhhhcCCcEEEecCCCcc
Q 001981 584 PKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKGAS----LGVLIKGGNALEKAHKVKTVVFDKTGTL 659 (986)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~~~~~~----~gilvk~~~~le~lg~i~~i~fDKTGTL 659 (986)
.+.|...+.+++-++....|..|..-+.++-........+ -|.++|....-|+||++.++..||||||
T Consensus 347 --------~~~wyi~~~RfllLFS~IIPISLRvnlDmaK~~ys~~i~~D~~IpgtvvRSstIPEeLGRIsylLtDKTGTL 418 (1051)
T KOG0210|consen 347 --------GSDWYIYIIRFLLLFSSIIPISLRVNLDMAKIVYSWQIEHDKNIPGTVVRSSTIPEELGRISYLLTDKTGTL 418 (1051)
T ss_pred --------CCchHHHHHHHHHHHhhhceeEEEEehhHHHhhHhhhcccCCCCCceeeecCCChHHhcceEEEEecCcCcc
Confidence 2467788889999999999999999888887666555443 3789999999999999999999999999
Q ss_pred ccCccEEEEEEecC----CCCHHHHHHHHHHHHh----------------------------------------------
Q 001981 660 TVGKPEVVSAVLFS----HFSMEEFCDMATAAEA---------------------------------------------- 689 (986)
Q Consensus 660 T~g~~~v~~~~~~~----~~~~~~~~~~~~~~e~---------------------------------------------- 689 (986)
|+|+|.+++++... ..+.+++-+...++..
T Consensus 419 TqNEM~~KKiHLGTv~~s~e~~~eV~~~i~s~~~~~~~~~~~~~~~~k~~~s~rv~~~V~alalCHNVTPv~e~~ge~sY 498 (1051)
T KOG0210|consen 419 TQNEMEFKKIHLGTVAYSAETMDEVSQHIQSLYTPGRNKGKGALSRVKKDMSARVRNAVLALALCHNVTPVFEDDGEVSY 498 (1051)
T ss_pred ccchheeeeeeeeeeeccHhHHHHHHHHHHHhhCCCcccccccchhhcCcccHHHHHHHHHHHHhccCCcccCCCceEEe
Confidence 99999999988642 1122233222222221
Q ss_pred cCCChHHHHHHHHHHHhhhhcCCC---------------CCCCccccceeeee-CCeeEEEEC---CEEEEEecHHHHHh
Q 001981 690 NSEHPIAKAVVEHAKKLRQKLGSP---------------TEHASEAKDFEVHT-GAGVSGKVG---DRTVLVGNKRLMMA 750 (986)
Q Consensus 690 ~s~hp~~~ai~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~-g~g~~~~~~---~~~~~vg~~~~~~~ 750 (986)
...+|.+-||+++-+..|...... .++...+.+|+... .+|+...-. .-.+.+...+-++.
T Consensus 499 QAaSPDEVAiVkwTe~VGl~L~~Rd~~~itL~~~~~~~~~yqIL~vFPFtsEtKRMGIIVr~e~~~evtfylKGAD~VMs 578 (1051)
T KOG0210|consen 499 QAASPDEVAIVKWTETVGLKLAKRDRHAITLRVPLDDELNYQILQVFPFTSETKRMGIIVRDETTEEVTFYLKGADVVMS 578 (1051)
T ss_pred ecCCCCeEEEEEeeeecceEEeecccceEEEecCCCcceeEEEEEEeccccccceeeEEEecCCCceEEEEEecchHHHh
Confidence 112344444444333322211000 01112233444332 345444332 12333344444445
Q ss_pred cCCCCChhhHHHHHHHHhccCcEEEEEE---------------------------------------CCEEEEEEEecCC
Q 001981 751 FHVPVGPEVDDYMMKNEQLARTCVLVAI---------------------------------------DGRVAGAFAVTDP 791 (986)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~g~~~i~va~---------------------------------------~~~~~G~i~~~d~ 791 (986)
.-+..++++++...++.++|.|++.+|. |++++|+.+.+|+
T Consensus 579 ~iVq~NdWleEE~gNMAREGLRtLVvakK~Ls~~eye~Fe~~y~~A~lSi~dR~~~ma~vv~~~LE~dlelL~LTGVEDk 658 (1051)
T KOG0210|consen 579 GIVQYNDWLEEECGNMAREGLRTLVVAKKVLSEEEYEAFEEAYNAAKLSISDRDQKMANVVERYLERDLELLGLTGVEDK 658 (1051)
T ss_pred cccccchhhhhhhhhhhhhcceEEEEEecccCHHHHHHHHHHHHhhhCccchHHHHHHHHHHHHHHhhhHHhcccChHHH
Confidence 5566777888888889999999999997 6789999999999
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC-----------------------------------------
Q 001981 792 VKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI----------------------------------------- 830 (986)
Q Consensus 792 ~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi----------------------------------------- 830 (986)
++++++.+++-||.+||++||+|||..++|..+|+..++
T Consensus 659 LQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~sR~q~ihv~~~v~sr~dah~eL~~lR~k~~~aLvi~G~Sl 738 (1051)
T KOG0210|consen 659 LQDDVKPTLELLRNAGIKIWMLTGDKLETAICIAKSSRLFSRGQYIHVIRSVTSRGDAHNELNNLRRKTDCALVIDGESL 738 (1051)
T ss_pred HhhhhHhHHHHHhhcCcEEEEEcCcchhheeeeehhccceecCceEEEEEecCCchHHHHHHHHhhcCCCcEEEEcCchH
Confidence 999999999999999999999999999999999999998
Q ss_pred -------------------ceEEEecCcccHHHHHHHHhHc-CCEEEEEcCCcccHHHHHhCCceEEec-CCcHHHHHhc
Q 001981 831 -------------------GKVFAETDPVGKANKIKELQLK-GMTVAMVGDGINDSPALVAADVGMAIG-AGTDVAIEAA 889 (986)
Q Consensus 831 -------------------~~~~~~~~p~~K~~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vgia~~-~~~~~~~~~a 889 (986)
..+.+|++|.||+++++.+|+. |++|++||||-||++|+++||+||++- ..-..+.-+|
T Consensus 739 ~~cl~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~krvc~IGDGGNDVsMIq~A~~GiGI~gkEGkQASLAA 818 (1051)
T KOG0210|consen 739 EFCLKYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTGKRVCAIGDGGNDVSMIQAADVGIGIVGKEGKQASLAA 818 (1051)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhCceEEEEcCCCccchheeecccceeeecccccccchhc
Confidence 2588999999999999999975 889999999999999999999999984 3333455589
Q ss_pred CEEEeCCChhHHHHHHHH-HHHHHHHHHHHHHH
Q 001981 890 DIVLIKSSLEDVVTAIDL-SRKTISRIRLNYVW 921 (986)
Q Consensus 890 d~vl~~~~~~~l~~~i~~-~r~~~~~i~~n~~~ 921 (986)
|+.+. .++.+.+++.+ ||..+++-.+--.|
T Consensus 819 DfSIt--qF~Hv~rLLl~HGR~SYkrsa~laqf 849 (1051)
T KOG0210|consen 819 DFSIT--QFSHVSRLLLWHGRNSYKRSAKLAQF 849 (1051)
T ss_pred cccHH--HHHHHHHHhhccccchHHHHHHHHHH
Confidence 99884 48899988765 88888776554443
No 33
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=100.00 E-value=5.4e-38 Score=377.89 Aligned_cols=517 Identities=17% Similarity=0.182 Sum_probs=378.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCccccc
Q 001981 398 FFETSAMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVD 477 (986)
Q Consensus 398 ~~~~~~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaD 477 (986)
.....++++.+..+...+|++.|+|.++.++. .++.|. +++. ..++..+++|++||+|.+..+|.+|||
T Consensus 83 ~~~pl~~vl~~t~iKd~~eD~rR~~~D~~iN~------~~~~v~---~~~~--~~~~~~wk~~~vGd~v~v~~~~~~paD 151 (1151)
T KOG0206|consen 83 TLVPLLFVLGITAIKDAIEDYRRHKQDKEVNN------RKVEVL---RGDG--CFVEKKWKDVRVGDIVRVEKDEFVPAD 151 (1151)
T ss_pred eeeceeeeehHHHHHHHHhhhhhhhccHHhhc------ceeEEe---cCCc--eeeeeccceeeeeeEEEeccCCccccc
Confidence 33344566677789999999999999988875 567777 3321 378899999999999999999999999
Q ss_pred EEEEe-----ccceeeccccccCCcceecCC-----------------------------------------------CC
Q 001981 478 GVVTD-----GQSYVNESMITGEAKPIAKGP-----------------------------------------------GD 505 (986)
Q Consensus 478 g~vl~-----G~~~Vdes~lTGEs~pv~k~~-----------------------------------------------g~ 505 (986)
.++++ |.|+|+++.|+||+....|+. .+
T Consensus 152 ~llLsss~~~~~cyveT~nLDGEtnLK~k~~l~~~~~~~~~~~~~~~~~~i~cE~p~~~ly~f~g~l~~~~~~~pl~~~~ 231 (1151)
T KOG0206|consen 152 LLLLSSSDEDGICYVETANLDGETNLKVKQALECTSKLDSEDSLKNFKGWIECEDPNANLYTFVGNLELQGQIYPLSPDN 231 (1151)
T ss_pred eEEecCCCCCceeEEEEeecCCccccceeeehhhhhcccccccccccCCceEEcCCcccHhhhhhheeeccCCCCCcHHH
Confidence 99995 778999999999998877753 12
Q ss_pred ceeeeeeecCc-eEEEEEEEeCCchHHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccC-CC
Q 001981 506 KVIGGTMNENG-CLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAG-LY 583 (986)
Q Consensus 506 ~v~aGs~~~~g-~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~ 583 (986)
.++.|+.+.+. .+.+.|+.+|.+|.+.+ ....+..+++++++..++....++++.+.++++..+...+..... ..
T Consensus 232 ~Llrg~~lrNT~~v~G~vv~tG~dtK~~~---n~~~~~~Krs~ier~~n~~i~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 308 (1151)
T KOG0206|consen 232 LLLRGSRLRNTEWVYGVVVFTGHDTKLMQ---NSGKPPSKRSRIERKMNKIIILLFVLLILMCLISAIGFAIWTRQDGRH 308 (1151)
T ss_pred cccCCceeccCcEEEEEEEEcCCcchHHH---hcCCCccccchhhhhhhhhHHHHHHHHHHHHHHHHhhhheeeeecccc
Confidence 35677777776 68889999999998876 444466778899999999888887777777777666543332210 11
Q ss_pred -CCccc-ccc--hhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHHHHH----------hhcCeEecCchHHhhhcCCc
Q 001981 584 -PKHWI-PKV--MDEFELALQFGISVLVVACPCALGLATPTAVMVATGKG----------ASLGVLIKGGNALEKAHKVK 649 (986)
Q Consensus 584 -~~~~~-~~~--~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~~~~----------~~~gilvk~~~~le~lg~i~ 649 (986)
+..|. ... .......+..++.++....|..|...+.+.-....... ......+|..+..|.||+++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~f~t~~il~~~liPISLyvsiEiik~~qs~fi~~D~~my~~e~d~~~~~rtsnl~eeLGqv~ 388 (1151)
T KOG0206|consen 309 NGEWWYLSPSEAAYAGFVHFLTFIILYQYLIPISLYVSIEIVKVLQSIFINNDLDMYDEETDTPAQARTSNLNEELGQVE 388 (1151)
T ss_pred cCchhhhcCchHHHHHHHHHHHHHhhhhceEEEEEEEEeeehHHHHHHHcchHHHhhhccCCCccccccCCchhhhccee
Confidence 11111 111 11223455566677778899999888877655443221 13477899999999999999
Q ss_pred EEEecCCCccccCccEEEEEEecCC-----CC------------------------------------------HHHHHH
Q 001981 650 TVVFDKTGTLTVGKPEVVSAVLFSH-----FS------------------------------------------MEEFCD 682 (986)
Q Consensus 650 ~i~fDKTGTLT~g~~~v~~~~~~~~-----~~------------------------------------------~~~~~~ 682 (986)
+|+.|||||||+|.|.+.++...+. .+ ..++..
T Consensus 389 yIfSDKTGTLT~N~M~F~kCsi~g~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~f~~ 468 (1151)
T KOG0206|consen 389 YIFSDKTGTLTQNSMEFKKCSINGTSYGRNVTEVEAALAKRSGGDVNEHKIKGFTFEDSRLVDGLWSSEPQAEDILEFFR 468 (1151)
T ss_pred EEEEcCcCccccceeeeecccccCcccccCCChhhcccCccccccccccccccceeccchhhccccccccCcchHHHHhh
Confidence 9999999999999999988766421 00 112222
Q ss_pred HHHHH--------------HhcCCChHHHHHHHHHHHhhhhcCCCCCC--------------CccccceeeeeCCeeEEE
Q 001981 683 MATAA--------------EANSEHPIAKAVVEHAKKLRQKLGSPTEH--------------ASEAKDFEVHTGAGVSGK 734 (986)
Q Consensus 683 ~~~~~--------------e~~s~hp~~~ai~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~g~g~~~~ 734 (986)
..+.+ .+..+.|.+.|+++.|++.|..+...+.. ...+.+|... .+.|+..
T Consensus 469 ~la~chtv~~e~~~~~~~~~Y~A~SPDE~AlV~aAr~~gf~f~~Rt~~~vti~~~g~~~~y~lL~iLeF~S~-RKRMSVI 547 (1151)
T KOG0206|consen 469 ALALCHTVIPEKDEDSGKLSYEAESPDEAALVEAARELGFVFLGRTPDSVTIRELGVEETYELLNVLEFNST-RKRMSVI 547 (1151)
T ss_pred HHhccceeeeccCCCccceeeecCCCcHHHHHHHHHhcCceeeeccCceEEEeccccceeEEEEEEeccccc-cceeEEE
Confidence 22221 22346899999999999988765322111 1111222222 4455555
Q ss_pred ECC-----EEEEEecHHHHHhcC----CCCChhhHHHHHHHHhccCcEEEEEE---------------------------
Q 001981 735 VGD-----RTVLVGNKRLMMAFH----VPVGPEVDDYMMKNEQLARTCVLVAI--------------------------- 778 (986)
Q Consensus 735 ~~~-----~~~~vg~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~i~va~--------------------------- 778 (986)
+.. .-++.|...-+.+.- ...-+...+.++++..+|.|++++|+
T Consensus 548 VR~p~g~i~LycKGADsvI~erL~~~~~~~~e~T~~Hl~~yA~eGLRTLc~A~r~l~e~eY~~w~~~~~~A~ts~~~Re~ 627 (1151)
T KOG0206|consen 548 VRDPDGRILLYCKGADSVIFERLSKNGEKLREKTQEHLEEYATEGLRTLCLAYRELDEEEYEEWNERYNEAKTSLTDREE 627 (1151)
T ss_pred EEcCCCcEEEEEcCcchhhHhhhhhcchHHHHHHHHHHHHHHhhhhhHhhhhhhccCHHHHHHHHHHHHHHHhhccCHHH
Confidence 522 234457665544422 22333445677888999999999997
Q ss_pred -----------CCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC-----------------
Q 001981 779 -----------DGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI----------------- 830 (986)
Q Consensus 779 -----------~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi----------------- 830 (986)
|+.++|..++||+++++++++|+.|+++|||+||+|||..+||..++-.+++
T Consensus 628 ~L~e~ae~iEk~L~LLGATAIEDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~Ll~~~m~~i~i~~~~~~~ 707 (1151)
T KOG0206|consen 628 LLDEVAEEIEKDLILLGATAIEDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRLLRQDMKLIIINTETSEE 707 (1151)
T ss_pred HHHHHHHHHHhcchhhcceeeechhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcCCCCCceEEEEecCChhh
Confidence 6789999999999999999999999999999999999999999999877665
Q ss_pred ---------------------------------------------------------------ceEEEecCcccHHHHHH
Q 001981 831 ---------------------------------------------------------------GKVFAETDPVGKANKIK 847 (986)
Q Consensus 831 ---------------------------------------------------------------~~~~~~~~p~~K~~~v~ 847 (986)
..+++|++|.||+.+++
T Consensus 708 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~aLVIDGktl~~aL~~~~~~~Fl~la~~C~sViCCR~sPlQKA~Vv~ 787 (1151)
T KOG0206|consen 708 LSSLDATAALKETLLRKFTEELEEAKLEHSEKPFALVIDGKTLAYALEDELRKKFLELAKRCKSVICCRVSPLQKALVVK 787 (1151)
T ss_pred hcchhhHHHHHHHHHHhhhHHHHHHhhccCcCCceEEEECHHHHhhhCchhhHHHHHHHHhcCEEEEccCCHHHHHHHHH
Confidence 14788999999999999
Q ss_pred HHhH-cCCEEEEEcCCcccHHHHHhCCceEEecC--CcHHHHHhcCEEEeCCChhHHHHHH-HHHHHHHHHHHHHHHHHH
Q 001981 848 ELQL-KGMTVAMVGDGINDSPALVAADVGMAIGA--GTDVAIEAADIVLIKSSLEDVVTAI-DLSRKTISRIRLNYVWAL 923 (986)
Q Consensus 848 ~l~~-~g~~v~~vGDg~nD~~al~~A~vgia~~~--~~~~~~~~ad~vl~~~~~~~l~~~i-~~~r~~~~~i~~n~~~~~ 923 (986)
..++ .+..+++||||.||++|++.|||||++++ |-+ |..++|+.+.. +.-+.+++ -.||..+.++.+.+.+.+
T Consensus 788 lVk~~~~~~TLAIGDGANDVsMIQ~AhVGVGIsG~EGmQ-AvmsSD~AIaq--FrfL~rLLLVHGhW~Y~R~a~~ilyfF 864 (1151)
T KOG0206|consen 788 LVKKGLKAVTLAIGDGANDVSMIQEAHVGVGISGQEGMQ-AVMSSDFAIAQ--FRFLERLLLVHGHWSYIRLAKMILYFF 864 (1151)
T ss_pred HHHhcCCceEEEeeCCCccchheeeCCcCeeeccchhhh-hhhcccchHHH--HHHHhhhheeecceeHHHHHHHHHHHH
Confidence 9974 57889999999999999999999999973 444 44488887743 56566554 459999999999999999
Q ss_pred HHHHHHHHH
Q 001981 924 GYNVLAVPI 932 (986)
Q Consensus 924 ~~n~~~i~l 932 (986)
..|+.....
T Consensus 865 YKNi~f~~~ 873 (1151)
T KOG0206|consen 865 YKNIAFTFT 873 (1151)
T ss_pred HHHHHHHHH
Confidence 999876543
No 34
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=100.00 E-value=1.6e-34 Score=306.37 Aligned_cols=223 Identities=30% Similarity=0.560 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCe-EEEEEecCCCCeeeEEEeeCCCcCCCcEEEEcCCCcccccEEEEe
Q 001981 404 MLISFILLGKYLEVVAKGKTSDALAKLTDLAPDT-AHLLTLDGEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVVTD 482 (986)
Q Consensus 404 ~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~-~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaDg~vl~ 482 (986)
+++++++++.+++.++++|+++.++++.+..+++ ++|+ ||| +++++++++|+|||+|++++||++||||+|++
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~---r~~---~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~ 74 (230)
T PF00122_consen 1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVI---RDG---RWQKIPSSELVPGDIIILKAGDIVPADGILLE 74 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEE---ETT---EEEEEEGGGT-TTSEEEEETTEBESSEEEEEE
T ss_pred CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEE---ecc---ccccchHhhccceeeeecccccccccCcccee
Confidence 4678889999999999999999999999999998 7777 888 89999999999999999999999999999999
Q ss_pred -ccceeeccccccCCcceecC-----CCCceeeeeeecCceEEEEEEEeCCchHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 001981 483 -GQSYVNESMITGEAKPIAKG-----PGDKVIGGTMNENGCLQVKATHVGSETALSQIVQLVEAAQLARAPVQKLADQIS 556 (986)
Q Consensus 483 -G~~~Vdes~lTGEs~pv~k~-----~g~~v~aGs~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~ 556 (986)
|.+.||||.+|||+.|+.|. +|+.+|+||.+.+|.+.++|+++|.+|.++++.+.+.+.+.+++++++..+++.
T Consensus 75 ~g~~~vd~s~ltGes~pv~k~~~~~~~~~~i~~Gs~v~~g~~~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00122_consen 75 SGSAYVDESALTGESEPVKKTPLPLNPGNIIFAGSIVVSGWGIGVVIATGSDTKLGRILQLVSKSESKKSPLERKLNKIA 154 (230)
T ss_dssp SSEEEEECHHHHSBSSEEEESSSCCCTTTEE-TTEEEEEEEEEEEEEE-GGGSHHHHHHHHHHTSCSS-THHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhccccccccccccccceeeecccccccccccccccccchhhhhhhHHHH
Confidence 99999999999999999999 999999999999999999999999999999999999888877899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHHHHHHHhhcCeEe
Q 001981 557 RFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMVATGKGASLGVLI 636 (986)
Q Consensus 557 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~~~~~~~~~gilv 636 (986)
.++++++++++++++++|++.. ...+|...+..++++++++|||+|++++|+++..+..+++++|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~i~~l~~~~P~~l~~~~~~~~~~~~~~~~~~~i~v 222 (230)
T PF00122_consen 155 KILIIIILAIAILVFIIWFFND------------SGISFFKSFLFAISLLIVLIPCALPLALPLSLAIAARRLAKNGIIV 222 (230)
T ss_dssp HHHHHHHHHHHHHHHHHCHTGS------------TTCHCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHhcccccchhhhccceecc------------cccccccccccccceeeeecccceeehHHHHHHHHHHHHHHCCEEE
Confidence 9999999999998887776621 0135567888999999999999999999999999999999999999
Q ss_pred cCchHHhh
Q 001981 637 KGGNALEK 644 (986)
Q Consensus 637 k~~~~le~ 644 (986)
|+++++|.
T Consensus 223 ~~~~a~E~ 230 (230)
T PF00122_consen 223 KNLSALEA 230 (230)
T ss_dssp SSTTHHHH
T ss_pred eCcccccC
Confidence 99999995
No 35
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.95 E-value=8.2e-28 Score=252.66 Aligned_cols=209 Identities=41% Similarity=0.547 Sum_probs=179.4
Q ss_pred CcEEEecCCCccccCccEEEEEEecCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhhcCCCCCCCccccceeeee
Q 001981 648 VKTVVFDKTGTLTVGKPEVVSAVLFSHFSMEEFCDMATAAEANSEHPIAKAVVEHAKKLRQKLGSPTEHASEAKDFEVHT 727 (986)
Q Consensus 648 i~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~~~~~~~~~e~~s~hp~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (986)
|++||||||||||+|++.+ .+ .+...++.++...+..+.||++.++..++...... + . ..++....
T Consensus 1 i~~i~fDktGTLt~~~~~v---~~---~~~~~~~~~~~~~~~~s~~p~~~~~~~~~~~~~~~---~--~---~~~~~~~~ 66 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV---AP---PSNEAALAIAAALEQGSEHPIGKAIVEFAKNHQWS---K--S---LESFSEFI 66 (215)
T ss_dssp ESEEEEECCTTTBESHHEE---ES---CSHHHHHHHHHHHHCTSTSHHHHHHHHHHHHHHHH---S--C---CEEEEEET
T ss_pred CeEEEEecCCCcccCeEEE---Ee---ccHHHHHHHHHHhhhcCCCcchhhhhhhhhhccch---h--h---hhhheeee
Confidence 5899999999999999999 11 67889999999999999999999999998765432 1 1 67788899
Q ss_pred CCeeEEEECCEEEEEecHHHHHhcCCCCChhhHHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCC
Q 001981 728 GAGVSGKVGDRTVLVGNKRLMMAFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSME 807 (986)
Q Consensus 728 g~g~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~g 807 (986)
+.|+.+.+++. +. |+++++....... .............+.+.+.++.++.++|.+.+.|+++++++++|+.|+++|
T Consensus 67 ~~~~~~~~~~~-~~-g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~L~~~G 143 (215)
T PF00702_consen 67 GRGISGDVDGI-YL-GSPEWIHELGIRV-ISPDLVEEIQESQGRTVIVLAVNLIFLGLFGLRDPLRPGAKEALQELKEAG 143 (215)
T ss_dssp TTEEEEEEHCH-EE-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCEEEEESHEEEEEEEEEEEBHTTHHHHHHHHHHTT
T ss_pred ecccccccccc-cc-ccchhhhhccccc-cccchhhhHHHhhCCcccceeecCeEEEEEeecCcchhhhhhhhhhhhccC
Confidence 99999998877 55 9988887654321 111122223456677888888899999999999999999999999999999
Q ss_pred CeEEEEcCCCHHHHHHHHHHcCCce--EEEec--CcccH--HHHHHHHhHcCCEEEEEcCCcccHHHHHhCC
Q 001981 808 ISSIMVTGDNWATANAIAKEVGIGK--VFAET--DPVGK--ANKIKELQLKGMTVAMVGDGINDSPALVAAD 873 (986)
Q Consensus 808 i~~~~~Tgd~~~~a~~~a~~~gi~~--~~~~~--~p~~K--~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~ 873 (986)
++++|+|||+..++..+++++||+. +|+++ +|++| .++++.|+.+++.|+|||||.||++|+++||
T Consensus 144 i~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 144 IKVAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp EEEEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEESSGGHHHHHHHSS
T ss_pred cceeeeeccccccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEccCHHHHHHHHhCc
Confidence 9999999999999999999999987 99999 99999 9999999977779999999999999999997
No 36
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.63 E-value=2.4e-15 Score=174.35 Aligned_cols=171 Identities=32% Similarity=0.498 Sum_probs=150.0
Q ss_pred CCCCcccc-cccCCCCcCccccccccCCCCCCCCCCCccccCCCCceeEEEEEecCCCChhHHHHHHHHHhCCCCceEEE
Q 001981 4 NSVNGEME-GERGDDGLKEPLLLQHVNGVAIDIPPQQQFSYDGSKKLRTVKFKIREIKCASCATSIESVLSNLNGVESAV 82 (986)
Q Consensus 4 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gm~C~~C~~~I~~~l~~~~gv~~~~ 82 (986)
|.++.|.+ +.++|+||+..+++.+-... .+..+.+.||+|++|+++|++.+++.+|+.++.
T Consensus 40 ~~~~~~~i~~~ied~gf~~~~~~~~~~~~------------------~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~ 101 (951)
T KOG0207|consen 40 NIVSPESIKETIEDMGFEASLLSDSEITA------------------SKCYLSVNGMTCASCVATIERNLRKIEGVESAV 101 (951)
T ss_pred eccCHHHHHHHhhcccceeeecccCcccc------------------ceeEEEecCceeHHHHHHHHHHhhccCCcceEE
Confidence 44555443 57899999999977644322 167899999999999999999999999999999
Q ss_pred eeccCceEEEEeCCCCCCHHHHHHHHHHcCCCCCCCCcc---cceEEEEeecCccChhhHHHHHHHhhccCCEEEEEeec
Q 001981 83 VSPLEGQAVVKFIPGLITAKRIKETVEEAGFPVDDFPEQ---DIAVCRLRIKGMMCTSCSESVERAIEMVDGVKKAVVGV 159 (986)
Q Consensus 83 v~~~~~~~~v~~~~~~~~~~~i~~~v~~~G~~~~~~~~~---~~~~~~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~ 159 (986)
+.+..+++.+.|+++..+.+.+.+.+++.||.+...+.. +..+..|.|.||+|.+|+.+||+.+.+++||.++.+++
T Consensus 102 val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~~~~~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~ 181 (951)
T KOG0207|consen 102 VALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVNGNSNQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSL 181 (951)
T ss_pred EEeeccceeEEECCcccCchhHHHHHHhcCccceehhcccCCCCCcEEEEeecccccchhhhhHHHHhhccCeeEEEEec
Confidence 999999999999999999999999999999998633221 12578999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCCChhHHHHHHHhcCCCcccc
Q 001981 160 ALEEAKVHFDPNLTDTDHIVEAIEDAGFGADLI 192 (986)
Q Consensus 160 ~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 192 (986)
.++++.|.|+|..++++++.+.+++.||++...
T Consensus 182 ~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~ 214 (951)
T KOG0207|consen 182 ATDTAIVVYDPEITGPRDIIKAIEETGFEASVR 214 (951)
T ss_pred cCCceEEEecccccChHHHHHHHHhhcccceee
Confidence 999999999999999999999999999987643
No 37
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=99.62 E-value=5.7e-15 Score=131.29 Aligned_cols=124 Identities=31% Similarity=0.432 Sum_probs=109.5
Q ss_pred EECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--eEEEecCcccHHHHHHHHhHcCC
Q 001981 777 AIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG--KVFAETDPVGKANKIKELQLKGM 854 (986)
Q Consensus 777 a~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~--~~~~~~~p~~K~~~v~~l~~~g~ 854 (986)
.+-+++.+.++-.-.+-+++++.|+.|+++ ++++++|||...+..++|+-+||+ .+|+.-.|+.|..+++.|++.++
T Consensus 16 ~~~~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~rv~a~a~~e~K~~ii~eLkk~~~ 94 (152)
T COG4087 16 SKAGKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYE 94 (152)
T ss_pred eecceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCceeeeecccCHHHHHHHHHHhcCCCc
Confidence 345678889999999999999999999999 999999999999999999999995 68888999999999999999999
Q ss_pred EEEEEcCCcccHHHHHhCCceEEe-c--CCcHHHHHhcCEEEeCCChhHHHH
Q 001981 855 TVAMVGDGINDSPALVAADVGMAI-G--AGTDVAIEAADIVLIKSSLEDVVT 903 (986)
Q Consensus 855 ~v~~vGDg~nD~~al~~A~vgia~-~--~~~~~~~~~ad~vl~~~~~~~l~~ 903 (986)
.|+|||||.||.+||+.||+||.. + +....+.++||+++. ++..+.+
T Consensus 95 k~vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik--~i~e~ld 144 (152)
T COG4087 95 KVVMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLK--EIAEILD 144 (152)
T ss_pred EEEEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhh--hHHHHHH
Confidence 999999999999999999999875 3 456778899999973 3444443
No 38
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.31 E-value=8e-12 Score=115.85 Aligned_cols=114 Identities=23% Similarity=0.307 Sum_probs=96.9
Q ss_pred HHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecCcccHHHHHHHHhHc----CCEEEEEcCCcccHHHHHhCCc
Q 001981 799 VVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLK----GMTVAMVGDGINDSPALVAADV 874 (986)
Q Consensus 799 ~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~v 874 (986)
.|+.|.+.|+++.++||++...++.-++.|||+.+|-.. ++|....+.|.++ .+.|+++||..||.|+|++.++
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG~--~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~vGl 120 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQGI--SDKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVGL 120 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeech--HhHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHHcCC
Confidence 356788899999999999999999999999999999775 5888877777654 4679999999999999999999
Q ss_pred eEEecCCcHHHHHhcCEEEeCCC----hhHHHHHHHHHHHHHHH
Q 001981 875 GMAIGAGTDVAIEAADIVLIKSS----LEDVVTAIDLSRKTISR 914 (986)
Q Consensus 875 gia~~~~~~~~~~~ad~vl~~~~----~~~l~~~i~~~r~~~~~ 914 (986)
++++.++.+..++.||+|+..+. ...+.++|..++..+..
T Consensus 121 s~a~~dAh~~v~~~a~~Vt~~~GG~GAvREv~dlil~aq~~~d~ 164 (170)
T COG1778 121 SVAVADAHPLLKQRADYVTSKKGGEGAVREVCDLILQAQGKLDE 164 (170)
T ss_pred cccccccCHHHHHhhHhhhhccCcchHHHHHHHHHHHccCcHHH
Confidence 99999999999999999998643 56666777666665443
No 39
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.23 E-value=3.5e-11 Score=98.58 Aligned_cols=61 Identities=34% Similarity=0.509 Sum_probs=59.2
Q ss_pred eeeecCCCCchhHHHHHHhhcCCCCeEEEEEecCCCEEEEEeCCCCCChHHHHHHHHHhcC
Q 001981 202 HLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEEASH 262 (986)
Q Consensus 202 ~~~v~Gm~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g~ 262 (986)
+|.|+||+|++|+++|+++|.++|||.++.+|+.++++.|.|++..+++++|.++|+++||
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 5889999999999999999999999999999999999999999998999999999999997
No 40
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.21 E-value=6.5e-11 Score=117.18 Aligned_cols=102 Identities=20% Similarity=0.225 Sum_probs=84.5
Q ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecCcc--cHHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCce
Q 001981 798 IVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPV--GKANKIKELQLKGMTVAMVGDGINDSPALVAADVG 875 (986)
Q Consensus 798 ~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~--~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vg 875 (986)
.+|+.|+++|+++.++|+.+...++.+.+++|+..+|....|+ ....+++.+....+.+++|||+.||.+|++.|+++
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~ 120 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHEGIKKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLA 120 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEecCCCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCe
Confidence 3678899999999999999999999999999999988876433 22233333333346799999999999999999999
Q ss_pred EEecCCcHHHHHhcCEEEeCCChh
Q 001981 876 MAIGAGTDVAIEAADIVLIKSSLE 899 (986)
Q Consensus 876 ia~~~~~~~~~~~ad~vl~~~~~~ 899 (986)
++|+++.+.+++.|++|+..++-.
T Consensus 121 ~am~nA~~~lk~~A~~I~~~~~~~ 144 (169)
T TIGR02726 121 VAVGDAVADVKEAAAYVTTARGGH 144 (169)
T ss_pred EECcCchHHHHHhCCEEcCCCCCC
Confidence 999999999999999998755543
No 41
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.16 E-value=2e-10 Score=118.11 Aligned_cols=116 Identities=15% Similarity=0.172 Sum_probs=100.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEE--------e-------cCcccHHHHHHHHhHcCCE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFA--------E-------TDPVGKANKIKELQLKGMT 855 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~--------~-------~~p~~K~~~v~~l~~~g~~ 855 (986)
++.|++.+.|+.||+.| +++++||.....+..+++++|++.+++ + ..++.|...++.+++.|..
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~~~ 146 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYYR 146 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhCCC
Confidence 57999999999999975 999999999999999999999987775 1 2457899999999888888
Q ss_pred EEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHHHH
Q 001981 856 VAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLS 908 (986)
Q Consensus 856 v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~ 908 (986)
++|+|||.||.+|++.||++|++. +.+..+++||=.-.-.+.+.+..++..+
T Consensus 147 ~v~vGDs~nDl~ml~~Ag~~ia~~-ak~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T TIGR02137 147 VIAAGDSYNDTTMLSEAHAGILFH-APENVIREFPQFPAVHTYEDLKREFLKA 198 (203)
T ss_pred EEEEeCCHHHHHHHHhCCCCEEec-CCHHHHHhCCCCCcccCHHHHHHHHHHH
Confidence 999999999999999999999995 5666777777666667788888888776
No 42
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.15 E-value=2.7e-10 Score=125.09 Aligned_cols=115 Identities=22% Similarity=0.317 Sum_probs=101.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEe-----------------cCcccHHHHHHHHhHc-
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAE-----------------TDPVGKANKIKELQLK- 852 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~-----------------~~p~~K~~~v~~l~~~- 852 (986)
++.|++.+.++.|++.|+++.++||.....+..+.+++|++.++++ +..+.|.+.++.+.++
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~l 260 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEY 260 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHc
Confidence 5899999999999999999999999998889999999999876652 1345798888887654
Q ss_pred ---CCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHH
Q 001981 853 ---GMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAID 906 (986)
Q Consensus 853 ---g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 906 (986)
.+.+++||||.||.+|++.|++||+| ++.+.+++.||+++..+++.++..++-
T Consensus 261 gi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nAkp~Vk~~Ad~~i~~~~l~~~l~~~~ 316 (322)
T PRK11133 261 EIPLAQTVAIGDGANDLPMIKAAGLGIAY-HAKPKVNEQAQVTIRHADLMGVLCILS 316 (322)
T ss_pred CCChhhEEEEECCHHHHHHHHHCCCeEEe-CCCHHHHhhCCEEecCcCHHHHHHHhc
Confidence 36799999999999999999999999 899999999999999999999988764
No 43
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.15 E-value=1.6e-10 Score=94.57 Aligned_cols=62 Identities=35% Similarity=0.729 Sum_probs=59.5
Q ss_pred EEeecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCC
Q 001981 127 RLRIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAGFG 188 (986)
Q Consensus 127 ~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 188 (986)
+|.|+||+|++|+.+|+++|.+++||.++.+|+.++++.|.|++...+++++.+.|+++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 57899999999999999999999999999999999999999999888899999999999994
No 44
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.11 E-value=6.6e-10 Score=109.35 Aligned_cols=104 Identities=18% Similarity=0.221 Sum_probs=87.7
Q ss_pred HHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecCcccHHHHHHHHhH----cCCEEEEEcCCcccHHHHHhCCc
Q 001981 799 VVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQL----KGMTVAMVGDGINDSPALVAADV 874 (986)
Q Consensus 799 ~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~----~g~~v~~vGDg~nD~~al~~A~v 874 (986)
+|++|+++|+++.++||++...+..+++++|++.+|... ..|.+.++.+.+ ..+.++||||+.||.+|++.|++
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~~--~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~ 113 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQGQ--SNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGL 113 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEecc--cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCC
Confidence 899999999999999999999999999999999888764 456666665543 24679999999999999999999
Q ss_pred eEEecCCcHHHHHhcCEEEeCCChhH-HHHH
Q 001981 875 GMAIGAGTDVAIEAADIVLIKSSLED-VVTA 904 (986)
Q Consensus 875 gia~~~~~~~~~~~ad~vl~~~~~~~-l~~~ 904 (986)
++++.++.+..+..+++++.++.-.+ +.++
T Consensus 114 ~~~v~~~~~~~~~~a~~i~~~~~~~g~~~~~ 144 (154)
T TIGR01670 114 SVAVADAHPLLIPRADYVTRIAGGRGAVREV 144 (154)
T ss_pred eEecCCcCHHHHHhCCEEecCCCCCcHHHHH
Confidence 99999988889999999998665333 4433
No 45
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.09 E-value=7.8e-10 Score=120.42 Aligned_cols=132 Identities=23% Similarity=0.365 Sum_probs=101.4
Q ss_pred cEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--------------------
Q 001981 772 TCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG-------------------- 831 (986)
Q Consensus 772 ~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~-------------------- 831 (986)
..+++-.||+++.- ...+.+.++++|++|+++|++++++||++...+..+.+++|++
T Consensus 4 kli~~DlDGTLl~~---~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~I~~NGa~i~~~~~~ 80 (270)
T PRK10513 4 KLIAIDMDGTLLLP---DHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQPGDYCITNNGALVQKAADG 80 (270)
T ss_pred EEEEEecCCcCcCC---CCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCCCCCeEEEcCCeEEEECCCC
Confidence 45666778888753 3468999999999999999999999999999999999999851
Q ss_pred ---------------------------------eEEEe----------------c----------C-------------c
Q 001981 832 ---------------------------------KVFAE----------------T----------D-------------P 839 (986)
Q Consensus 832 ---------------------------------~~~~~----------------~----------~-------------p 839 (986)
.++.. . . +
T Consensus 81 ~~i~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 160 (270)
T PRK10513 81 ETVAQTALSYDDYLYLEKLSREVGVHFHALDRNTLYTANRDISYYTVHESFLTGIPLVFREVEKMDPNLQFPKVMMIDEP 160 (270)
T ss_pred CEEEecCCCHHHHHHHHHHHHHcCCcEEEEECCEEEEecCCcchhHHHhhhhccCCccccchhhccccCCceEEEEeCCH
Confidence 00100 0 0 0
Q ss_pred c----------------------------------cHHHHHHHHhHc----CCEEEEEcCCcccHHHHHhCCceEEecCC
Q 001981 840 V----------------------------------GKANKIKELQLK----GMTVAMVGDGINDSPALVAADVGMAIGAG 881 (986)
Q Consensus 840 ~----------------------------------~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~ 881 (986)
+ .|...++.+.+. .+.|+++|||.||.+||+.|++|+||+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA 240 (270)
T PRK10513 161 EILDAAIARIPAEVKERYTVLKSAPYFLEILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNA 240 (270)
T ss_pred HHHHHHHHHhHHHhcCcEEEEEecCeeEEEeCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCc
Confidence 0 111111111110 15699999999999999999999999999
Q ss_pred cHHHHHhcCEEEeCCChhHHHHHHH
Q 001981 882 TDVAIEAADIVLIKSSLEDVVTAID 906 (986)
Q Consensus 882 ~~~~~~~ad~vl~~~~~~~l~~~i~ 906 (986)
.+.+++.||+|+.+++-.++.++|+
T Consensus 241 ~~~vK~~A~~vt~~n~~dGva~~i~ 265 (270)
T PRK10513 241 IPSVKEVAQFVTKSNLEDGVAFAIE 265 (270)
T ss_pred cHHHHHhcCeeccCCCcchHHHHHH
Confidence 9999999999999999999988875
No 46
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.07 E-value=1.2e-09 Score=115.92 Aligned_cols=131 Identities=28% Similarity=0.340 Sum_probs=103.5
Q ss_pred cEEEEEECCEEEEEEEecC-CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce------------------
Q 001981 772 TCVLVAIDGRVAGAFAVTD-PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGK------------------ 832 (986)
Q Consensus 772 ~~i~va~~~~~~G~i~~~d-~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~------------------ 832 (986)
+.+++-.||+++- .| .+.+.+.++|++|+++|++++++||++...+..+++++|++.
T Consensus 4 kli~~DlDGTLl~----~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~ 79 (230)
T PRK01158 4 KAIAIDIDGTITD----KDRRLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVISVGFDGKR 79 (230)
T ss_pred eEEEEecCCCcCC----CCCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCcEEEecCeEEEEcCCCCE
Confidence 4566677888773 33 478999999999999999999999999999999999999820
Q ss_pred -------------------------EE------------------------------------------EecCcc--cHH
Q 001981 833 -------------------------VF------------------------------------------AETDPV--GKA 843 (986)
Q Consensus 833 -------------------------~~------------------------------------------~~~~p~--~K~ 843 (986)
.+ .++.|. .|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ei~~~~~~Kg 159 (230)
T PRK01158 80 IFLGDIEECEKAYSELKKRFPEASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEELGLDLEIVDSGFAIHIKSPGVNKG 159 (230)
T ss_pred EEEcchHHHHHHHHHHHHhccccceeeecCCcccccceeeecccccHHHHHHHHHHcCCcEEEEecceEEEEeeCCCChH
Confidence 00 011111 244
Q ss_pred HHHHHHhHc----CCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHH
Q 001981 844 NKIKELQLK----GMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAID 906 (986)
Q Consensus 844 ~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 906 (986)
..++.+.+. .+.++++||+.||.+|++.|++|++|+++.+.+++.||+|+.+++-.++.++|+
T Consensus 160 ~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~vk~~a~~v~~~n~~~Gv~~~l~ 226 (230)
T PRK01158 160 TGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVANADEELKEAADYVTEKSYGEGVAEAIE 226 (230)
T ss_pred HHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecCccHHHHHhcceEecCCCcChHHHHHH
Confidence 444444332 256999999999999999999999999999999999999999999999988875
No 47
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.06 E-value=1.6e-09 Score=135.71 Aligned_cols=134 Identities=30% Similarity=0.458 Sum_probs=110.0
Q ss_pred eEEEEEecCCCChhHHHHHHHHHhCCCCceEEEeeccCceEEEEeCCCCCCHHHHHHHHHHcCCCCCCCCc---------
Q 001981 50 RTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAGFPVDDFPE--------- 120 (986)
Q Consensus 50 ~~~~~~v~gm~C~~C~~~I~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~G~~~~~~~~--------- 120 (986)
+++++.|+||+|++|+.+|++++++++||.++++++. +..+... .+.+.+.+.++++||++.....
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~---~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~ 77 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT---ASAEALIETIKQAGYDASVSHPKAKPLTESS 77 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec---CCHHHHHHHHHhcCCcccccccccccccccc
Confidence 4688999999999999999999999999999999984 4444432 4678999999999998752100
Q ss_pred ------------------ccceEEEEeecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHH
Q 001981 121 ------------------QDIAVCRLRIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAI 182 (986)
Q Consensus 121 ------------------~~~~~~~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i 182 (986)
....+..+.++||+|.+|+..+++.+.+.+||.++.+++.+++..+.. ..+.+++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~---~~s~~~I~~~I 154 (834)
T PRK10671 78 IPSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMG---SASPQDLVQAV 154 (834)
T ss_pred cCchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEc---cCCHHHHHHHH
Confidence 001246788999999999999999999999999999999999988863 24567888888
Q ss_pred HhcCCCccc
Q 001981 183 EDAGFGADL 191 (986)
Q Consensus 183 ~~~Gy~~~~ 191 (986)
+++||.+.+
T Consensus 155 ~~~Gy~a~~ 163 (834)
T PRK10671 155 EKAGYGAEA 163 (834)
T ss_pred HhcCCCccc
Confidence 999998653
No 48
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.05 E-value=9.8e-10 Score=115.17 Aligned_cols=130 Identities=24% Similarity=0.240 Sum_probs=103.6
Q ss_pred EEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--------------------
Q 001981 773 CVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGK-------------------- 832 (986)
Q Consensus 773 ~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~-------------------- 832 (986)
.+++-.||+++. -..++.+.+.++|++|++.|++++++||++...++.++++++++.
T Consensus 3 ~v~~DlDGTLl~---~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i~~NGa~i~~~~~~~~~~ 79 (215)
T TIGR01487 3 LVAIDIDGTLTE---PNRMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVAENGGVIFYNKEDIFLA 79 (215)
T ss_pred EEEEecCCCcCC---CCcccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEEEccCcEEEeCCCcEEEe
Confidence 456667888874 123588999999999999999999999999999999999999920
Q ss_pred ---------------------------------------------------------EEEecCc--ccHHHHHHHHhHc-
Q 001981 833 ---------------------------------------------------------VFAETDP--VGKANKIKELQLK- 852 (986)
Q Consensus 833 ---------------------------------------------------------~~~~~~p--~~K~~~v~~l~~~- 852 (986)
.+.++.| -.|...++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~ 159 (215)
T TIGR01487 80 NMEEEWFLDEEKKKRFPRDRLSNEYPRASLVIMREGKDVDEVREIIKERGLNLVDSGFAIHIMKKGVDKGVGVEKLKELL 159 (215)
T ss_pred cccchhhHHHhhhhhhhhhhcccccceeEEEEecCCccHHHHHHHHHhCCeEEEecCceEEEecCCCChHHHHHHHHHHh
Confidence 0011111 2566656555442
Q ss_pred ---CCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHH
Q 001981 853 ---GMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAI 905 (986)
Q Consensus 853 ---g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i 905 (986)
.+.++++||+.||.+|++.|++|++|+++.+.+++.||+++.+++-.++.++|
T Consensus 160 ~i~~~~~i~iGDs~ND~~ml~~ag~~vam~na~~~~k~~A~~v~~~~~~~Gv~~~l 215 (215)
T TIGR01487 160 GIKPEEVAAIGDSENDIDLFRVVGFKVAVANADDQLKEIADYVTSNPYGEGVVEVL 215 (215)
T ss_pred CCCHHHEEEECCCHHHHHHHHhCCCeEEcCCccHHHHHhCCEEcCCCCCchhhhhC
Confidence 24599999999999999999999999999999999999999888888877653
No 49
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.04 E-value=1.2e-09 Score=118.89 Aligned_cols=132 Identities=17% Similarity=0.207 Sum_probs=100.9
Q ss_pred cEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--------------------
Q 001981 772 TCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG-------------------- 831 (986)
Q Consensus 772 ~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~-------------------- 831 (986)
+.+++-.||+++.- ...+.+.++++|++|+++|++++++||++...++.+.+++|++
T Consensus 3 kli~~DlDGTLl~~---~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~I~~~~~~~l~ 79 (272)
T PRK15126 3 RLAAFDMDGTLLMP---DHHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLDAYLITGNGTRVHSLEGELLH 79 (272)
T ss_pred cEEEEeCCCcCcCC---CCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCcEEecCCcEEEcCCCCEEE
Confidence 35566678888742 3468999999999999999999999999999999999999981
Q ss_pred -----------------------------eEEE-----------------------------------------------
Q 001981 832 -----------------------------KVFA----------------------------------------------- 835 (986)
Q Consensus 832 -----------------------------~~~~----------------------------------------------- 835 (986)
..+.
T Consensus 80 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~~~~~~~ 159 (272)
T PRK15126 80 RQDLPADVAELVLHQQWDTRASMHVFNDDGWFTGKEIPALLQAHVYSGFRYQLIDLKRLPAHGVTKICFCGDHDDLTRLQ 159 (272)
T ss_pred eecCCHHHHHHHHHHhhhcCcEEEEEcCCeEEecCCcHHHHHHHHhcCCceEEecHHHccccCceEEEEECCHHHHHHHH
Confidence 0000
Q ss_pred ---------------------ecCcc--cHHHHHHHHhHc----CCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHh
Q 001981 836 ---------------------ETDPV--GKANKIKELQLK----GMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEA 888 (986)
Q Consensus 836 ---------------------~~~p~--~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ 888 (986)
++.|. .|...++.|.+. .+.|+++||+.||.+||+.|+.||||+++.+.+++.
T Consensus 160 ~~l~~~~~~~~~~~~s~~~~~eI~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~vK~~ 239 (272)
T PRK15126 160 IQLNEALGERAHLCFSATDCLEVLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNAMPQLRAE 239 (272)
T ss_pred HHHHHHhcCCEEEEEcCCcEEEeecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCChHHHHHh
Confidence 00000 122222222221 256999999999999999999999999999999999
Q ss_pred cCE--EEeCCChhHHHHHHH
Q 001981 889 ADI--VLIKSSLEDVVTAID 906 (986)
Q Consensus 889 ad~--vl~~~~~~~l~~~i~ 906 (986)
||. ++.+++-.++.++|+
T Consensus 240 A~~~~v~~~n~edGva~~l~ 259 (272)
T PRK15126 240 LPHLPVIGHCRNQAVSHYLT 259 (272)
T ss_pred CCCCeecCCCcchHHHHHHH
Confidence 986 666888889988774
No 50
>PRK10976 putative hydrolase; Provisional
Probab=99.04 E-value=1.7e-09 Score=117.45 Aligned_cols=132 Identities=19% Similarity=0.254 Sum_probs=100.4
Q ss_pred cEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--------------------
Q 001981 772 TCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG-------------------- 831 (986)
Q Consensus 772 ~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~-------------------- 831 (986)
+.+++-.||+++.- ...+.+.+.++|++|+++|++++++||++...+..+.+++|++
T Consensus 3 kli~~DlDGTLl~~---~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~~i~ 79 (266)
T PRK10976 3 QVVASDLDGTLLSP---DHTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIKSYMITSNGARVHDTDGNLIF 79 (266)
T ss_pred eEEEEeCCCCCcCC---CCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCeEEEcCCcEEECCCCCEeh
Confidence 35666778888732 3458999999999999999999999999999999999999981
Q ss_pred ------------------------------eEEE-ec------------------------------------Ccc----
Q 001981 832 ------------------------------KVFA-ET------------------------------------DPV---- 840 (986)
Q Consensus 832 ------------------------------~~~~-~~------------------------------------~p~---- 840 (986)
..+. +. .++
T Consensus 80 ~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~~ 159 (266)
T PRK10976 80 SHNLDRDIASDLFGVVHDNPDIITNVYRDDEWFMNRHRPEEMRFFKEAVFKYQLYEPGLLEPDGVSKVFFTCDSHEKLLP 159 (266)
T ss_pred hhcCCHHHHHHHHHhhcccCCEEEEEEcCCeEEEcCCChHHHHHHHhcCCcceeechhhcccCCceEEEEEcCCHHHHHH
Confidence 0000 00 000
Q ss_pred ------------------------------cHHHHHHHHhHc----CCEEEEEcCCcccHHHHHhCCceEEecCCcHHHH
Q 001981 841 ------------------------------GKANKIKELQLK----GMTVAMVGDGINDSPALVAADVGMAIGAGTDVAI 886 (986)
Q Consensus 841 ------------------------------~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~ 886 (986)
.|...++.+.+. .+.|+++||+.||.+||+.|+.||||+++.+.++
T Consensus 160 ~~~~l~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA~~~vK 239 (266)
T PRK10976 160 LEQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRLK 239 (266)
T ss_pred HHHHHHHHhCCcEEEEEeCCceEEEEcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCCcHHHH
Confidence 111112222111 1569999999999999999999999999999999
Q ss_pred HhcC--EEEeCCChhHHHHHHH
Q 001981 887 EAAD--IVLIKSSLEDVVTAID 906 (986)
Q Consensus 887 ~~ad--~vl~~~~~~~l~~~i~ 906 (986)
+.|| .|+.+++-.++.++|+
T Consensus 240 ~~A~~~~v~~~n~edGVa~~l~ 261 (266)
T PRK10976 240 DLLPELEVIGSNADDAVPHYLR 261 (266)
T ss_pred HhCCCCeecccCchHHHHHHHH
Confidence 9987 7888888899988875
No 51
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.04 E-value=1.4e-09 Score=118.03 Aligned_cols=133 Identities=24% Similarity=0.411 Sum_probs=105.5
Q ss_pred cEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--------------------
Q 001981 772 TCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG-------------------- 831 (986)
Q Consensus 772 ~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~-------------------- 831 (986)
+.+++-.||+++.- ..++.+.++++|+++++.|++++++||++...+..+.++++++
T Consensus 4 kli~~DlDGTLl~~---~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~~ 80 (264)
T COG0561 4 KLLAFDLDGTLLDS---NKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGPLITFNGALIYNGGELLFQ 80 (264)
T ss_pred eEEEEcCCCCccCC---CCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCccEEEeCCeEEecCCcEEee
Confidence 45666667766543 3348999999999999999999999999999999999999992
Q ss_pred -----------------------eEE------------------------------------------------------
Q 001981 832 -----------------------KVF------------------------------------------------------ 834 (986)
Q Consensus 832 -----------------------~~~------------------------------------------------------ 834 (986)
.++
T Consensus 81 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (264)
T COG0561 81 KPLSREDVEELLELLEDFQGIALVLYTDDGIYLTKKRGTFAEARIGFANLSPVGREAAELEDNKIIALDKDHEILEELVE 160 (264)
T ss_pred ecCCHHHHHHHHHHHHhccCceEEEEeccceeeccCCCcccccccccccccccccchhhcCcceEEEEecChHhHHHHHH
Confidence 000
Q ss_pred --------------------EecCc--ccHHHHHHHHhHc-C---CEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHh
Q 001981 835 --------------------AETDP--VGKANKIKELQLK-G---MTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEA 888 (986)
Q Consensus 835 --------------------~~~~p--~~K~~~v~~l~~~-g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ 888 (986)
.++.| ..|...++.+.+. | +.|+++||+.||.+||+.|+.|||||++.+.+++.
T Consensus 161 ~l~~~~~~~~~~~~~s~~~~lei~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~Na~~~~k~~ 240 (264)
T COG0561 161 ALRKRFPDLGLTVSSSGPISLDITPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNADEELKEL 240 (264)
T ss_pred HHhhhccccceEEEEcCCceEEEecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccCCCHHHHhh
Confidence 00011 1355555555442 2 35999999999999999999999999999999999
Q ss_pred cCEEEeCCChhHHHHHHHH
Q 001981 889 ADIVLIKSSLEDVVTAIDL 907 (986)
Q Consensus 889 ad~vl~~~~~~~l~~~i~~ 907 (986)
||++..+++-.+|.+.++.
T Consensus 241 A~~vt~~n~~~Gv~~~l~~ 259 (264)
T COG0561 241 ADYVTTSNDEDGVAEALEK 259 (264)
T ss_pred CCcccCCccchHHHHHHHH
Confidence 9998899999999988864
No 52
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.02 E-value=1.4e-09 Score=91.04 Aligned_cols=68 Identities=28% Similarity=0.562 Sum_probs=63.6
Q ss_pred eeEEEEEecCCCChhHHHHHHHHHhCCCCceEEEeeccCceEEEEeCCCCCCHHHHHHHHHHcCCCCC
Q 001981 49 LRTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAGFPVD 116 (986)
Q Consensus 49 ~~~~~~~v~gm~C~~C~~~I~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~G~~~~ 116 (986)
+++..+.++||+|.+|+.+|+++|++++||.++++++..+...+.+++...+.+++.++++++||.+.
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~ 68 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVE 68 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCee
Confidence 35678999999999999999999999999999999999999999999877899999999999999863
No 53
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.00 E-value=1.7e-09 Score=90.51 Aligned_cols=66 Identities=42% Similarity=0.721 Sum_probs=62.9
Q ss_pred EEEEeecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCCcc
Q 001981 125 VCRLRIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAGFGAD 190 (986)
Q Consensus 125 ~~~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 190 (986)
+..+.++||+|.+|+..++++|++++||.++++++..+.+.|.+++...+.+++.++++++||.+.
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~ 68 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVE 68 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCee
Confidence 568999999999999999999999999999999999999999999988899999999999999865
No 54
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.94 E-value=4.7e-09 Score=110.93 Aligned_cols=127 Identities=24% Similarity=0.282 Sum_probs=99.1
Q ss_pred EECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-------------------------
Q 001981 777 AIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG------------------------- 831 (986)
Q Consensus 777 a~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~------------------------- 831 (986)
-.||+++.- ...+.+.+.++|++|++.|++++++||++...+..+++++|+.
T Consensus 4 DlDGTLl~~---~~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~~~~~~~ 80 (225)
T TIGR01482 4 DIDGTLTDP---NRAINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDPVIAENGGEISYNEGMDDIFLAYL 80 (225)
T ss_pred eccCccCCC---CcccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCeEEEecCcEEEeCCCCceEEeccc
Confidence 346666531 2357899999999999999999999999999999999999961
Q ss_pred --------------------------------------------------eE-------EEecCc--ccHHHHHHHHhHc
Q 001981 832 --------------------------------------------------KV-------FAETDP--VGKANKIKELQLK 852 (986)
Q Consensus 832 --------------------------------------------------~~-------~~~~~p--~~K~~~v~~l~~~ 852 (986)
.+ +.++.| ..|...++.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~ 160 (225)
T TIGR01482 81 EEEWFLDIVIAKTFPFSRLKVQYPRRASLVKMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEK 160 (225)
T ss_pred CHHHHHHHHHhcccchhhhccccccccceEEEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHH
Confidence 00 011112 2566666665442
Q ss_pred ----CCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhH----HHHHHH
Q 001981 853 ----GMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLED----VVTAID 906 (986)
Q Consensus 853 ----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~----l~~~i~ 906 (986)
.+.++++||+.||.+|++.|++|++|+++.+.+++.||+|..+++-.+ +.++++
T Consensus 161 ~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~~k~~A~~vt~~~~~~G~~~~v~~~l~ 222 (225)
T TIGR01482 161 LGIKPGETLVCGDSENDIDLFEVPGFGVAVANAQPELKEWADYVTESPYGEGGAEAIGEILQ 222 (225)
T ss_pred hCCCHHHEEEECCCHhhHHHHHhcCceEEcCChhHHHHHhcCeecCCCCCCcHHHHHHHHHH
Confidence 356999999999999999999999999999999999999998888888 666554
No 55
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.94 E-value=7.8e-09 Score=104.94 Aligned_cols=138 Identities=17% Similarity=0.256 Sum_probs=102.8
Q ss_pred cCcEEEEEECCEEEEE-EEe-cC--CCChhH---HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecCcccH
Q 001981 770 ARTCVLVAIDGRVAGA-FAV-TD--PVKPEA---QIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGK 842 (986)
Q Consensus 770 g~~~i~va~~~~~~G~-i~~-~d--~~~~~~---~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K 842 (986)
+.+.+.+-.||+++.- +.. .+ ++++-. ..+|+.|+++|+++.++||++...+..+++++|++.+|.. .++|
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~g--~~~k 97 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQG--QSNK 97 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeecC--CCcH
Confidence 5667777778877631 111 11 112222 2689999999999999999999999999999999988874 3567
Q ss_pred HHHHHHHhHc----CCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCC----hhHHHHHHHHHH
Q 001981 843 ANKIKELQLK----GMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSS----LEDVVTAIDLSR 909 (986)
Q Consensus 843 ~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~----~~~l~~~i~~~r 909 (986)
...++.+.++ .+.|+||||+.||.++++.|+++++++++.+..+..||+++..++ ...+.+.+...|
T Consensus 98 ~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~v~~~~~~~~~~a~~v~~~~~g~g~~~el~~~i~~~~ 172 (183)
T PRK09484 98 LIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVAVADAHPLLLPRADYVTRIAGGRGAVREVCDLLLLAQ 172 (183)
T ss_pred HHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEecCChhHHHHHhCCEEecCCCCCCHHHHHHHHHHHhc
Confidence 7666655432 357999999999999999999999998888888889999986432 455555554444
No 56
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.93 E-value=5e-09 Score=110.27 Aligned_cols=113 Identities=26% Similarity=0.362 Sum_probs=96.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEe-----------------cCcccHHHHHHHHhHcC
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAE-----------------TDPVGKANKIKELQLKG 853 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~-----------------~~p~~K~~~v~~l~~~g 853 (986)
++++++.+.++.|+++|++++++||.....+..+++++|++.+|+. ..+..|..+++.+.++.
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 164 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRKE 164 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHHc
Confidence 5899999999999999999999999999999999999999887752 11234788777665442
Q ss_pred ----CEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHH
Q 001981 854 ----MTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTA 904 (986)
Q Consensus 854 ----~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~ 904 (986)
+.++||||+.+|.++++.|+++++++ +.+..++.||+++.+.++..+..+
T Consensus 165 ~~~~~~~i~iGDs~~Di~aa~~ag~~i~~~-~~~~~~~~a~~~i~~~~~~~~~~~ 218 (219)
T TIGR00338 165 GISPENTVAVGDGANDLSMIKAAGLGIAFN-AKPKLQQKADICINKKDLTDILPL 218 (219)
T ss_pred CCCHHHEEEEECCHHHHHHHHhCCCeEEeC-CCHHHHHhchhccCCCCHHHHHhh
Confidence 46999999999999999999999995 567788899999999998887654
No 57
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.92 E-value=1.4e-08 Score=110.77 Aligned_cols=53 Identities=30% Similarity=0.424 Sum_probs=49.6
Q ss_pred CEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHH
Q 001981 854 MTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAID 906 (986)
Q Consensus 854 ~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 906 (986)
+.+++|||+.||.+|++.|++|++||++.+..++.||+++.+++-.++.++|+
T Consensus 216 ~e~i~~GD~~NDi~m~~~ag~~vamgna~~~lk~~Ad~v~~~n~~dGv~~~l~ 268 (272)
T PRK10530 216 KNVVAFGDNFNDISMLEAAGLGVAMGNADDAVKARADLVIGDNTTPSIAEFIY 268 (272)
T ss_pred HHeEEeCCChhhHHHHHhcCceEEecCchHHHHHhCCEEEecCCCCcHHHHHH
Confidence 46999999999999999999999999999999999999999999999998875
No 58
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.91 E-value=1.1e-08 Score=107.48 Aligned_cols=116 Identities=25% Similarity=0.334 Sum_probs=91.1
Q ss_pred cCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec-----C------cccHHHHHHHHhHcCCEEE
Q 001981 789 TDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET-----D------PVGKANKIKELQLKGMTVA 857 (986)
Q Consensus 789 ~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~-----~------p~~K~~~v~~l~~~g~~v~ 857 (986)
...+-|++++++..|+++|++..++|+++...+..+.+++|+..+|..+ . |......++.+....++++
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l 166 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEAL 166 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheE
Confidence 4568899999999999999999999999999999999999998766332 2 2233345555554444799
Q ss_pred EEcCCcccHHHHHhCC---ceEEecC--CcHHHHHhcCEEEeCCChhHHHHHHH
Q 001981 858 MVGDGINDSPALVAAD---VGMAIGA--GTDVAIEAADIVLIKSSLEDVVTAID 906 (986)
Q Consensus 858 ~vGDg~nD~~al~~A~---vgia~~~--~~~~~~~~ad~vl~~~~~~~l~~~i~ 906 (986)
||||..+|+.|.++|+ +|+.+|. ........+|+++ +++..+...+.
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi--~~~~el~~~l~ 218 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVI--DSLAELLALLA 218 (220)
T ss_pred EECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEE--CCHHHHHHHHh
Confidence 9999999999999999 7788875 3455555699998 56777776553
No 59
>PLN02887 hydrolase family protein
Probab=98.89 E-value=1e-08 Score=120.41 Aligned_cols=53 Identities=28% Similarity=0.437 Sum_probs=50.1
Q ss_pred CEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHH
Q 001981 854 MTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAID 906 (986)
Q Consensus 854 ~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 906 (986)
+.|+++|||.||.+||+.|++||||||+.+.+++.||+|+.+++-++|.++|+
T Consensus 524 eeviAFGDs~NDIeMLe~AG~gVAMgNA~eeVK~~Ad~VT~sNdEDGVA~aLe 576 (580)
T PLN02887 524 DEIMAIGDGENDIEMLQLASLGVALSNGAEKTKAVADVIGVSNDEDGVADAIY 576 (580)
T ss_pred HHEEEEecchhhHHHHHHCCCEEEeCCCCHHHHHhCCEEeCCCCcCHHHHHHH
Confidence 36999999999999999999999999999999999999999999999998876
No 60
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.89 E-value=6.5e-09 Score=111.74 Aligned_cols=117 Identities=28% Similarity=0.371 Sum_probs=96.8
Q ss_pred cCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-------------------------------------
Q 001981 789 TDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG------------------------------------- 831 (986)
Q Consensus 789 ~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~------------------------------------- 831 (986)
...+.+.+.++|++|+++|++++++||++...+..+.++++++
T Consensus 13 ~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i~~~~~~~l~~~~i~~~~~~~i~~~~~ 92 (254)
T PF08282_consen 13 DGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGIDDYFICSNGALIDDPKGKILYEKPIDSDDVKKILKYLK 92 (254)
T ss_dssp TSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEEEETTTEEEEEESB-HHHHHHHHHHHH
T ss_pred CCeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccchhhhcccccceeeecccccchhhheeccchhheeehhh
Confidence 4467899999999999999999999999999999999999981
Q ss_pred --------------------------------------------------------------------------------
Q 001981 832 -------------------------------------------------------------------------------- 831 (986)
Q Consensus 832 -------------------------------------------------------------------------------- 831 (986)
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 172 (254)
T PF08282_consen 93 EHNISFFFYTDDDIYIYENKDEEELFFEHKFFNFKESIVSEDDLEDEEIFKILFFPDPEDLEQLREELKKKFPNLIDVVR 172 (254)
T ss_dssp HTTCEEEEEESSEEEESSTTCHHHHHHHHHHTSCEEEESHHHHHHCSSESEEEEESCHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred hcccccccccceeeecccccccchhhhhhcccccccccccccccccccceeeeccccchhhhhhhhhhccccCcceeEEE
Confidence
Q ss_pred --eEEEecCc--ccHHHHHHHHhHc----CCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHH
Q 001981 832 --KVFAETDP--VGKANKIKELQLK----GMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVT 903 (986)
Q Consensus 832 --~~~~~~~p--~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~ 903 (986)
..+-+++| -.|...++.+.+. .+.++++||+.||.+||+.++.|++|+++.+..++.||+++...+-.+|.+
T Consensus 173 ~~~~~lei~~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~na~~~~k~~a~~i~~~~~~~gv~~ 252 (254)
T PF08282_consen 173 SSPYFLEITPKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGNATPELKKAADYITPSNNDDGVAK 252 (254)
T ss_dssp EETTEEEEEETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEESSGTCTHHHH
T ss_pred ecccceEEeeCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcCCCHHHHHhCCEEecCCCCChHHH
Confidence 01112223 3677777776542 367999999999999999999999999999999999999998766688887
Q ss_pred HH
Q 001981 904 AI 905 (986)
Q Consensus 904 ~i 905 (986)
+|
T Consensus 253 ~i 254 (254)
T PF08282_consen 253 AI 254 (254)
T ss_dssp HH
T ss_pred hC
Confidence 65
No 61
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.85 E-value=9.6e-09 Score=106.14 Aligned_cols=103 Identities=28% Similarity=0.401 Sum_probs=84.5
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEe-----------------cCcccHHHHHHHHhHc
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAE-----------------TDPVGKANKIKELQLK 852 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~-----------------~~p~~K~~~v~~l~~~ 852 (986)
.+++|++.+.++.++++|.+++++||-....++.+++++|++.+++. +..+.|...++.+.+.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~ 155 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAE 155 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999744332 2346798888776653
Q ss_pred -C---CEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEE
Q 001981 853 -G---MTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVL 893 (986)
Q Consensus 853 -g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl 893 (986)
| +.+.++|||.||.|||+.|+.+|++.. .+..+..|+...
T Consensus 156 ~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~-~~~l~~~a~~~~ 199 (212)
T COG0560 156 LGIPLEETVAYGDSANDLPMLEAAGLPIAVNP-KPKLRALADVRI 199 (212)
T ss_pred cCCCHHHeEEEcCchhhHHHHHhCCCCeEeCc-CHHHHHHHHHhc
Confidence 4 359999999999999999999999964 444555565444
No 62
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.77 E-value=3.8e-08 Score=106.22 Aligned_cols=127 Identities=27% Similarity=0.432 Sum_probs=96.4
Q ss_pred EEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-----------------------
Q 001981 775 LVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG----------------------- 831 (986)
Q Consensus 775 ~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~----------------------- 831 (986)
++-.||+++.- ...+.+++.++|++|+++|++++++||++...+..+.+++|++
T Consensus 3 ~~DlDGTLl~~---~~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~I~~NGa~i~~~~~~~i~~~~ 79 (256)
T TIGR00099 3 FIDLDGTLLND---DHTISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDTPFITANGAAVIDDQGEILYKKP 79 (256)
T ss_pred EEeCCCCCCCC---CCccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCCCEEEcCCcEEECCCCCEEeecC
Confidence 44557777642 3358899999999999999999999999999999999999881
Q ss_pred --------------------------eEEE--------------------------------------------------
Q 001981 832 --------------------------KVFA-------------------------------------------------- 835 (986)
Q Consensus 832 --------------------------~~~~-------------------------------------------------- 835 (986)
.++.
T Consensus 80 i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (256)
T TIGR00099 80 LDLDLVEEILNFLKKHGLDVILYGDDSIYASKNDPEYFTIFKKFLGEPKLEVVDIQYLPDDILKILLLFLDPEDLDLLIE 159 (256)
T ss_pred CCHHHHHHHHHHHHHcCcEEEEEeCCeEEecCCCcchhHHHHHhccCCcceeccchhhhcccceEEEEECCHHHHHHHHH
Confidence 0000
Q ss_pred ---------------------ecCc--ccHHHHHHHHhHc----CCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHh
Q 001981 836 ---------------------ETDP--VGKANKIKELQLK----GMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEA 888 (986)
Q Consensus 836 ---------------------~~~p--~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ 888 (986)
++.| -.|...++.+.+. .+.++++||+.||.+|++.|+++++|+++.+.+++.
T Consensus 160 ~~~~~~~~~~~~~~~s~~~~leI~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~na~~~~k~~ 239 (256)
T TIGR00099 160 ALNKLELEENVSVVSSGPYSIEITAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGNADEELKAL 239 (256)
T ss_pred HhhhhhhcCCEEEEEecCceEEecCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecCchHHHHHh
Confidence 0000 0122222222221 156999999999999999999999999999999999
Q ss_pred cCEEEeCCChhHHHHH
Q 001981 889 ADIVLIKSSLEDVVTA 904 (986)
Q Consensus 889 ad~vl~~~~~~~l~~~ 904 (986)
||+++.+++-.+|.++
T Consensus 240 a~~~~~~n~~dGV~~~ 255 (256)
T TIGR00099 240 ADYVTDSNNEDGVALA 255 (256)
T ss_pred CCEEecCCCCcchhhh
Confidence 9999988888888765
No 63
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.76 E-value=4.8e-08 Score=101.60 Aligned_cols=114 Identities=24% Similarity=0.382 Sum_probs=92.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEe---------------cCcccHHHHHHHHhHcCCE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAE---------------TDPVGKANKIKELQLKGMT 855 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~---------------~~p~~K~~~v~~l~~~g~~ 855 (986)
++.|++.+.++.|+++ ++++++|+.....++.+.+++|++.+|+. ..|+.|...++.++..+..
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~~ 146 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGYR 146 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhCCe
Confidence 4689999999999999 99999999999999999999999765432 1367888889999888899
Q ss_pred EEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHH
Q 001981 856 VAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAID 906 (986)
Q Consensus 856 v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 906 (986)
++|||||.||.++.++|++|+.++.........++..+ -+++..+...+.
T Consensus 147 ~v~iGDs~~D~~~~~aa~~~v~~~~~~~~~~~~~~~~~-~~~~~el~~~l~ 196 (205)
T PRK13582 147 VIAAGDSYNDTTMLGEADAGILFRPPANVIAEFPQFPA-VHTYDELLAAID 196 (205)
T ss_pred EEEEeCCHHHHHHHHhCCCCEEECCCHHHHHhCCcccc-cCCHHHHHHHHH
Confidence 99999999999999999999998765444444555522 256777766553
No 64
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.66 E-value=1.5e-07 Score=99.60 Aligned_cols=117 Identities=21% Similarity=0.335 Sum_probs=88.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec---------Ccc--cHHHHHHHHhHcCCEEEE
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET---------DPV--GKANKIKELQLKGMTVAM 858 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~---------~p~--~K~~~v~~l~~~g~~v~~ 858 (986)
..+.|++.+.++.|++.|++++++||........+.+++|+...|... .|+ --..+++.++...+.+++
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~ 171 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLF 171 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheEE
Confidence 468899999999999999999999999999999999999996655432 111 113345555555678999
Q ss_pred EcCCcccHHHHHhCCc-eEEe--cC--CcHHHHHhcCEEEeCCChhHHHHHHHHH
Q 001981 859 VGDGINDSPALVAADV-GMAI--GA--GTDVAIEAADIVLIKSSLEDVVTAIDLS 908 (986)
Q Consensus 859 vGDg~nD~~al~~A~v-gia~--~~--~~~~~~~~ad~vl~~~~~~~l~~~i~~~ 908 (986)
|||+.+|..+.+++++ +|.+ |. ..+.....+++++ +++..+..++..+
T Consensus 172 igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i--~~~~~l~~~l~~~ 224 (226)
T PRK13222 172 VGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVI--DHFAELLPLLGLA 224 (226)
T ss_pred ECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEE--CCHHHHHHHHHHh
Confidence 9999999999999997 3444 42 2334445688877 7799988887654
No 65
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.61 E-value=3.5e-07 Score=99.44 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=49.4
Q ss_pred cCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Q 001981 770 ARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI 830 (986)
Q Consensus 770 g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi 830 (986)
..+.++.-.||+++.- ...+.+.++++|++|+++|++++++||++...+..+++++|+
T Consensus 6 ~~~lI~~DlDGTLL~~---~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~ 63 (271)
T PRK03669 6 DPLLIFTDLDGTLLDS---HTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGL 63 (271)
T ss_pred CCeEEEEeCccCCcCC---CCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCC
Confidence 4566777789998741 334668899999999999999999999999999999999987
No 66
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.60 E-value=2.4e-07 Score=95.98 Aligned_cols=100 Identities=21% Similarity=0.314 Sum_probs=80.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec-----------------CcccHHHHHHHHhHc-
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET-----------------DPVGKANKIKELQLK- 852 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~-----------------~p~~K~~~v~~l~~~- 852 (986)
+++|++.+.++.|+++|++++++|+.....++.+++.+|++.+++.. .|..|.+.++.+.++
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~~~ 159 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKREL 159 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999998776421 234666677666443
Q ss_pred ---CCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcC
Q 001981 853 ---GMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAAD 890 (986)
Q Consensus 853 ---g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad 890 (986)
.+.++||||+.||.+|++.||++++++......+.++|
T Consensus 160 ~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~~~~~a~~ 200 (201)
T TIGR01491 160 NPSLTETVAVGDSKNDLPMFEVADISISLGDEGHADYLAKD 200 (201)
T ss_pred CCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCccchhhccc
Confidence 35699999999999999999999999754444444443
No 67
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.58 E-value=8.9e-08 Score=92.24 Aligned_cols=90 Identities=30% Similarity=0.441 Sum_probs=76.9
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--EEEec-------------------CcccHHHHHHH
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGK--VFAET-------------------DPVGKANKIKE 848 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~--~~~~~-------------------~p~~K~~~v~~ 848 (986)
-.+.|++++.+..|+++|.+++++||.-...+..++.+|||+. +|++. ....|.++++.
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~ 166 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIAL 166 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHH
Confidence 4578999999999999999999999999999999999999974 55543 13479999999
Q ss_pred HhHc--CCEEEEEcCCcccHHHHHhCCceEEec
Q 001981 849 LQLK--GMTVAMVGDGINDSPALVAADVGMAIG 879 (986)
Q Consensus 849 l~~~--g~~v~~vGDg~nD~~al~~A~vgia~~ 879 (986)
+++. -+.++|||||.||.+|+..|+.=|+.|
T Consensus 167 lrk~~~~~~~~mvGDGatDlea~~pa~afi~~~ 199 (227)
T KOG1615|consen 167 LRKNYNYKTIVMVGDGATDLEAMPPADAFIGFG 199 (227)
T ss_pred HHhCCChheeEEecCCccccccCCchhhhhccC
Confidence 9874 356999999999999999977766665
No 68
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.56 E-value=6.2e-07 Score=97.60 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=48.7
Q ss_pred cEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc
Q 001981 772 TCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG 831 (986)
Q Consensus 772 ~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~ 831 (986)
+.+++-.||+++.- ...+.+.+.++|++|+++|++++++||++...+..+.+++|++
T Consensus 5 kli~~DlDGTLl~~---~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 5 LLVFTDLDGTLLDH---HTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred eEEEEcCcccCcCC---CCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 46667778888742 3457788999999999999999999999999999999999983
No 69
>PLN02954 phosphoserine phosphatase
Probab=98.53 E-value=9.6e-07 Score=93.21 Aligned_cols=112 Identities=25% Similarity=0.378 Sum_probs=86.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--eEEEe---c----------------CcccHHHHHHHH
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG--KVFAE---T----------------DPVGKANKIKEL 849 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~--~~~~~---~----------------~p~~K~~~v~~l 849 (986)
.+.|++.++++.|+++|+++.++||.....+..+++.+|++ ++|+. . ....|.+.++.+
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~ 163 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHI 163 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHH
Confidence 47899999999999999999999999999999999999996 46542 0 123588888877
Q ss_pred hHc--CCEEEEEcCCcccHHHHHh--CCceEEecCC--cHHHHHhcCEEEeCCChhHHHHH
Q 001981 850 QLK--GMTVAMVGDGINDSPALVA--ADVGMAIGAG--TDVAIEAADIVLIKSSLEDVVTA 904 (986)
Q Consensus 850 ~~~--g~~v~~vGDg~nD~~al~~--A~vgia~~~~--~~~~~~~ad~vl~~~~~~~l~~~ 904 (986)
.++ .+.++||||+.||..|.++ +++.++.|.. .+.....+|+++ +++..+.++
T Consensus 164 ~~~~~~~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~el~~~ 222 (224)
T PLN02954 164 KKKHGYKTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFV--TDFQDLIEV 222 (224)
T ss_pred HHHcCCCceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEE--CCHHHHHHh
Confidence 664 3579999999999999888 4566666632 233445689887 457776654
No 70
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.48 E-value=1e-06 Score=94.96 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=46.2
Q ss_pred CEEEEEcCCcccHHHHHhCCceEEecCCc---HHHHHh--c-CEEEeCCChhHHHHHHH
Q 001981 854 MTVAMVGDGINDSPALVAADVGMAIGAGT---DVAIEA--A-DIVLIKSSLEDVVTAID 906 (986)
Q Consensus 854 ~~v~~vGDg~nD~~al~~A~vgia~~~~~---~~~~~~--a-d~vl~~~~~~~l~~~i~ 906 (986)
+.++++||+.||.+|++.|++||+|+++. +..++. | ++|..+++-+++.++++
T Consensus 195 ~~~~a~GD~~ND~~Ml~~ag~~vam~Na~~~~~~lk~~~~a~~~vt~~~~~dGva~~l~ 253 (256)
T TIGR01486 195 IKVVGLGDSPNDLPLLEVVDLAVVVPGPNGPNVSLKPGDPGSFLLTPAPGPEGWREALE 253 (256)
T ss_pred ceEEEEcCCHhhHHHHHHCCEEEEeCCCCCCccccCccCCCcEEEcCCCCcHHHHHHHH
Confidence 45999999999999999999999999987 467775 4 58888899999998875
No 71
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.41 E-value=1.5e-06 Score=90.32 Aligned_cols=114 Identities=19% Similarity=0.329 Sum_probs=85.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec-------CcccHHH----HHHHHhHcCCEEEE
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET-------DPVGKAN----KIKELQLKGMTVAM 858 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~-------~p~~K~~----~v~~l~~~g~~v~~ 858 (986)
-++.+++.+++++|+++|+++.++||.+...+....+.+|+..+|..+ .++.+.+ +++.++-..+.++|
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~ 153 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVM 153 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheEE
Confidence 377899999999999999999999999999999999999996554432 1222333 33444444577999
Q ss_pred EcCCcccHHHHHhCCce---EEecCCc--HHHHHhcCEEEeCCChhHHHHHH
Q 001981 859 VGDGINDSPALVAADVG---MAIGAGT--DVAIEAADIVLIKSSLEDVVTAI 905 (986)
Q Consensus 859 vGDg~nD~~al~~A~vg---ia~~~~~--~~~~~~ad~vl~~~~~~~l~~~i 905 (986)
|||+.+|..+.+++++. +.+|.++ +...+.+|+++ +++..+..++
T Consensus 154 igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~--~~~~~l~~~~ 203 (205)
T TIGR01454 154 VGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLL--RKPQSLLALC 203 (205)
T ss_pred EcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeee--CCHHHHHHHh
Confidence 99999999999999954 4555433 34456789887 5677766544
No 72
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.36 E-value=1.8e-06 Score=91.87 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=54.0
Q ss_pred cHHHHHHHHhHc-C---CEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcC----EEEeCCChhHHHHHHH
Q 001981 841 GKANKIKELQLK-G---MTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAAD----IVLIKSSLEDVVTAID 906 (986)
Q Consensus 841 ~K~~~v~~l~~~-g---~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad----~vl~~~~~~~l~~~i~ 906 (986)
.|...++.+.++ | +.++++||+.||.+|++.+++||+|+++.+..++.|+ +|...++-.++.++|+
T Consensus 159 ~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~na~~~~k~~a~~~~~~v~~~~~~~Gv~~~i~ 232 (236)
T TIGR02471 159 SKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVGNHDPELEGLRHQQRIYFANNPHAFGILEGIN 232 (236)
T ss_pred ChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEcCCcHHHHHhhcCCcEEEcCCCChhHHHHHHH
Confidence 455555555432 2 3699999999999999999999999999999999999 7777778888888875
No 73
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.33 E-value=3.9e-06 Score=87.73 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=85.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC-ceEEEe-c----------Cc------------ccHHHH
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI-GKVFAE-T----------DP------------VGKANK 845 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi-~~~~~~-~----------~p------------~~K~~~ 845 (986)
.+++|++.+.++.|+++|++++++||........+.+.++. +.+++. + .| ..|..+
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~ 148 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSL 148 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHH
Confidence 46899999999999999999999999999999999988753 344331 1 12 248899
Q ss_pred HHHHhHcCCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHH
Q 001981 846 IKELQLKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAID 906 (986)
Q Consensus 846 v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 906 (986)
++.++...+.++|||||.||.+|++.||+.++-+.-.+...+.---...-+++..+...++
T Consensus 149 l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~~~ar~~l~~~~~~~~~~~~~~~~f~di~~~l~ 209 (214)
T TIGR03333 149 IRKLSEPNDYHIVIGDSVTDVEAAKQSDLCFARDYLLNECEELGLNHAPFQDFYDVRKELE 209 (214)
T ss_pred HHHHhhcCCcEEEEeCCHHHHHHHHhCCeeEehHHHHHHHHHcCCCccCcCCHHHHHHHHH
Confidence 9999888888999999999999999999977755222211211111122256777766654
No 74
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.33 E-value=2.8e-06 Score=89.19 Aligned_cols=112 Identities=19% Similarity=0.183 Sum_probs=83.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--eEEEe---cC----------c----------ccHHHH
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG--KVFAE---TD----------P----------VGKANK 845 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~--~~~~~---~~----------p----------~~K~~~ 845 (986)
+++|++.+.++.|+++|+++.++||.....+..+.+++ +. .+++. .+ | ..|..+
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 67999999999999999999999999999999999988 63 35432 11 1 248889
Q ss_pred HHHHhHcCCEEEEEcCCcccHHHHHhCCceEEecCCcHHHHH--hcCEEEeCCChhHHHHHH
Q 001981 846 IKELQLKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIE--AADIVLIKSSLEDVVTAI 905 (986)
Q Consensus 846 v~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~--~ad~vl~~~~~~~l~~~i 905 (986)
++.++.....++|||||.||.+|.++||+.++-+.-.+...+ .+.+.+ +++..+...+
T Consensus 153 l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a~~~l~~~~~~~~~~~~~~--~~f~ei~~~l 212 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSITDLEAAKQADKVFARDFLITKCEELGIPYTPF--ETFHDVQTEL 212 (219)
T ss_pred HHHhccCCCCEEEEeCCHHHHHHHHHCCcceeHHHHHHHHHHcCCCcccc--CCHHHHHHHH
Confidence 999888888899999999999999999997663311122112 133332 5577666654
No 75
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.30 E-value=2.2e-06 Score=87.71 Aligned_cols=88 Identities=23% Similarity=0.338 Sum_probs=74.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecC---------------c------------ccH
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETD---------------P------------VGK 842 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~---------------p------------~~K 842 (986)
-++.+++.+.++.|++.|++++++|+.+....+.+.+.+|+..+|..+- | ..|
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~K 150 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCCK 150 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCCH
Confidence 4789999999999999999999999999999999999999965432211 1 249
Q ss_pred HHHHHHHhHc-CCEEEEEcCCcccHHHHHhCCceEE
Q 001981 843 ANKIKELQLK-GMTVAMVGDGINDSPALVAADVGMA 877 (986)
Q Consensus 843 ~~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vgia 877 (986)
.++++.++.+ .+.++|||||.||..|.++||+-.|
T Consensus 151 ~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~~~a 186 (188)
T TIGR01489 151 GKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDVVFA 186 (188)
T ss_pred HHHHHHHHhhcCceEEEECCCcchhchHhcCCcccc
Confidence 9999999887 8899999999999999999987543
No 76
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.29 E-value=4e-06 Score=87.82 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=84.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecC-------cccHH----HHHHHHhHcCCEEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETD-------PVGKA----NKIKELQLKGMTVAMV 859 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~-------p~~K~----~~v~~l~~~g~~v~~v 859 (986)
++.|++.++++.|+++|+++.++|+.....+..+.+.+|+..+|..+. ++.+. .+++.+....+.++||
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 161 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMV 161 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEE
Confidence 478999999999999999999999999999999999999987664331 11222 3444444345679999
Q ss_pred cCCcccHHHHHhCCc---eEEecCC-cH-HHHHhcCEEEeCCChhHHHHHH
Q 001981 860 GDGINDSPALVAADV---GMAIGAG-TD-VAIEAADIVLIKSSLEDVVTAI 905 (986)
Q Consensus 860 GDg~nD~~al~~A~v---gia~~~~-~~-~~~~~ad~vl~~~~~~~l~~~i 905 (986)
||+.+|..|.++|++ ++..|.. .+ .....+|+++ +++..+..++
T Consensus 162 GDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i--~~~~~l~~~i 210 (214)
T PRK13288 162 GDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFML--DKMSDLLAIV 210 (214)
T ss_pred CCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEE--CCHHHHHHHH
Confidence 999999999999996 4555532 22 2334588876 5688777654
No 77
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.25 E-value=2.3e-06 Score=86.64 Aligned_cols=81 Identities=31% Similarity=0.447 Sum_probs=69.0
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEe-------------------cCcccHHHHHHHHhHc
Q 001981 792 VKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAE-------------------TDPVGKANKIKELQLK 852 (986)
Q Consensus 792 ~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~-------------------~~p~~K~~~v~~l~~~ 852 (986)
+++++.+.++.++++|++++++||.....++.+++.+|++.+++. ..+..|...++.+.++
T Consensus 74 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~~~ 153 (177)
T TIGR01488 74 LRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELLEE 153 (177)
T ss_pred cCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999765532 1235788888887654
Q ss_pred ----CCEEEEEcCCcccHHHHHhC
Q 001981 853 ----GMTVAMVGDGINDSPALVAA 872 (986)
Q Consensus 853 ----g~~v~~vGDg~nD~~al~~A 872 (986)
.+.++++|||.||.+|++.|
T Consensus 154 ~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 154 SKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred hCCCHHHEEEEeCCHHHHHHHhcC
Confidence 35699999999999999875
No 78
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.23 E-value=4.5e-06 Score=86.50 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=77.0
Q ss_pred cCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEe-c-----------------CcccHHHHHHHHh
Q 001981 789 TDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAE-T-----------------DPVGKANKIKELQ 850 (986)
Q Consensus 789 ~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~-~-----------------~p~~K~~~v~~l~ 850 (986)
...+++++.+.++.++++|++++++|+.....++.+++++|++.+++. + .++.|...++.+.
T Consensus 85 ~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~ 164 (202)
T TIGR01490 85 ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELL 164 (202)
T ss_pred HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999877643 1 1256777777664
Q ss_pred H-cC---CEEEEEcCCcccHHHHHhCCceEEecC
Q 001981 851 L-KG---MTVAMVGDGINDSPALVAADVGMAIGA 880 (986)
Q Consensus 851 ~-~g---~~v~~vGDg~nD~~al~~A~vgia~~~ 880 (986)
+ .+ +.++++||+.+|.++++.|+.++++..
T Consensus 165 ~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~ 198 (202)
T TIGR01490 165 AEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNP 198 (202)
T ss_pred HHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCC
Confidence 4 33 368999999999999999999998863
No 79
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.22 E-value=8.2e-06 Score=87.53 Aligned_cols=133 Identities=14% Similarity=0.174 Sum_probs=96.6
Q ss_pred EEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc----------------------
Q 001981 774 VLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG---------------------- 831 (986)
Q Consensus 774 i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~---------------------- 831 (986)
++.-.||+++.--.=..+..|...+++++++++|+.++++||++....+.+.+++++.
T Consensus 4 i~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~~~~~~~~ 83 (249)
T TIGR01485 4 LVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYYGGAEVPD 83 (249)
T ss_pred EEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEeCCCCcCC
Confidence 3444577777311114567799999999999999999999999999999999988871
Q ss_pred ----------------------------------------------------------------eE---EE-----ecCc
Q 001981 832 ----------------------------------------------------------------KV---FA-----ETDP 839 (986)
Q Consensus 832 ----------------------------------------------------------------~~---~~-----~~~p 839 (986)
.+ .+ ++.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ldi~~ 163 (249)
T TIGR01485 84 QHWAEYLSEKWQRDIVVAITDKFEELKPQPDLEQRPHKVSFFLDPEAAPEVIKQLTEMLKETGLDVKLIYSSGKDLDILP 163 (249)
T ss_pred HHHHHHHhcccCHHHHHHHHhcCcccccCCccccCCeeEEEEechhhhhHHHHHHHHHHHhcCCCEEEEEECCceEEEEe
Confidence 00 00 1122
Q ss_pred --ccHHHHHHHHhHc----CCEEEEEcCCcccHHHHHh-CCceEEecCCcHHHHHhcC-------EEEeCCChhHHHHHH
Q 001981 840 --VGKANKIKELQLK----GMTVAMVGDGINDSPALVA-ADVGMAIGAGTDVAIEAAD-------IVLIKSSLEDVVTAI 905 (986)
Q Consensus 840 --~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~-A~vgia~~~~~~~~~~~ad-------~vl~~~~~~~l~~~i 905 (986)
..|...++.+.+. .+.|+++||+.||.+|++. ++.||+|+++.+..++.++ ++.....-.++.+.+
T Consensus 164 ~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na~~~~k~~~~~~~~~~~~~~~~~~~~Gi~e~l 243 (249)
T TIGR01485 164 QGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQEELLQWYDENAKDKIYHASERCAGGIIEAI 243 (249)
T ss_pred CCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECCCHHHHHHHHHhcccCcEEEecCCCcHHHHHHH
Confidence 2455555555442 3579999999999999998 6799999999998887543 544455667777776
Q ss_pred H
Q 001981 906 D 906 (986)
Q Consensus 906 ~ 906 (986)
+
T Consensus 244 ~ 244 (249)
T TIGR01485 244 A 244 (249)
T ss_pred H
Confidence 5
No 80
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.18 E-value=6e-06 Score=84.76 Aligned_cols=77 Identities=31% Similarity=0.471 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce--EEEe-c------------Ccc-c--HHHHHHHH------
Q 001981 794 PEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGK--VFAE-T------------DPV-G--KANKIKEL------ 849 (986)
Q Consensus 794 ~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~--~~~~-~------------~p~-~--K~~~v~~l------ 849 (986)
+++.+.|+.++++|++++++||.....++.+++.+|++. +++. + ++. + |.+.++.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~ 171 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDEE 171 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhhc
Confidence 777799999999999999999999999999999999975 3332 2 222 3 99999999
Q ss_pred hHcCCEEEEEcCCcccHHHHH
Q 001981 850 QLKGMTVAMVGDGINDSPALV 870 (986)
Q Consensus 850 ~~~g~~v~~vGDg~nD~~al~ 870 (986)
+.....++++|||.||.+||+
T Consensus 172 ~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 172 DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp THTCCEEEEEESSGGGHHHHH
T ss_pred CCCCCeEEEEECCHHHHHHhC
Confidence 445788999999999999986
No 81
>PRK06769 hypothetical protein; Validated
Probab=98.17 E-value=6.2e-06 Score=82.89 Aligned_cols=106 Identities=15% Similarity=0.186 Sum_probs=78.2
Q ss_pred cCcEEEEEECCEEEEEEEecC----CCChhHHHHHHHHHHCCCeEEEEcCCCHH--------HHHHHHHHcCCceEEEec
Q 001981 770 ARTCVLVAIDGRVAGAFAVTD----PVKPEAQIVVSSLRSMEISSIMVTGDNWA--------TANAIAKEVGIGKVFAET 837 (986)
Q Consensus 770 g~~~i~va~~~~~~G~i~~~d----~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~--------~a~~~a~~~gi~~~~~~~ 837 (986)
|++++++-+|+++.|...+.+ ++.|++.+++++|++.|+++.++|+.+.. ......+.+|++.++...
T Consensus 3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 82 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCP 82 (173)
T ss_pred CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECc
Confidence 678999999999977744332 36899999999999999999999987641 234446778998876432
Q ss_pred C------cccH------HHHHHHHhHcCCEEEEEcCCcccHHHHHhCCce
Q 001981 838 D------PVGK------ANKIKELQLKGMTVAMVGDGINDSPALVAADVG 875 (986)
Q Consensus 838 ~------p~~K------~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vg 875 (986)
. ...| ..+++.+....+.++||||+.+|..+.++|++-
T Consensus 83 ~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~ 132 (173)
T PRK06769 83 HKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNAT 132 (173)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCe
Confidence 1 1122 234444444456799999999999999999954
No 82
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.16 E-value=1.8e-05 Score=85.63 Aligned_cols=113 Identities=18% Similarity=0.284 Sum_probs=84.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec---Cc-ccHHHHHHH----HhHcCCEEEEEcCC
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET---DP-VGKANKIKE----LQLKGMTVAMVGDG 862 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~---~p-~~K~~~v~~----l~~~g~~v~~vGDg 862 (986)
++.|++.++++.|+++|+++.++|+.+...+..+.+.+|+.+.|..+ .+ ..|.+.+.. +....+.++||||+
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IGDs 221 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYVGDE 221 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEECCC
Confidence 57899999999999999999999999999999999999997765443 11 124444333 33335679999999
Q ss_pred cccHHHHHhCCce---EEecCCcH--HHHHhcCEEEeCCChhHHHHHH
Q 001981 863 INDSPALVAADVG---MAIGAGTD--VAIEAADIVLIKSSLEDVVTAI 905 (986)
Q Consensus 863 ~nD~~al~~A~vg---ia~~~~~~--~~~~~ad~vl~~~~~~~l~~~i 905 (986)
.+|+.+.++|++- +..|.... .....+|+++ +++..|..++
T Consensus 222 ~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i--~~~~eL~~~~ 267 (273)
T PRK13225 222 TRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLL--ETPSDLLQAV 267 (273)
T ss_pred HHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEE--CCHHHHHHHH
Confidence 9999999999954 44553332 2234589887 6688887755
No 83
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=98.14 E-value=7.3e-06 Score=85.74 Aligned_cols=111 Identities=20% Similarity=0.255 Sum_probs=80.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec-----C--cccHHH----HHHHHhHcCCEEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET-----D--PVGKAN----KIKELQLKGMTVAMV 859 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~-----~--p~~K~~----~v~~l~~~g~~v~~v 859 (986)
++.|++.++++.|+++|+++.++|+.+...++.+.+++|+..+|..+ . +..+.+ +++.+....+.++||
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 164 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYV 164 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeEEe
Confidence 57899999999999999999999999999999999999996544222 1 112223 333333345679999
Q ss_pred cCCcccHHHHHhCCce---EEecCC--cHHHHHhcCEEEeCCChhHHHH
Q 001981 860 GDGINDSPALVAADVG---MAIGAG--TDVAIEAADIVLIKSSLEDVVT 903 (986)
Q Consensus 860 GDg~nD~~al~~A~vg---ia~~~~--~~~~~~~ad~vl~~~~~~~l~~ 903 (986)
||+.+|..+.++|++. +..|.. .......+|+++ +++..+..
T Consensus 165 gDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i--~~~~~l~~ 211 (213)
T TIGR01449 165 GDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLY--DSLNELPP 211 (213)
T ss_pred CCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEe--CCHHHHHh
Confidence 9999999999999965 333432 223334688877 55776654
No 84
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.14 E-value=1.5e-05 Score=86.01 Aligned_cols=131 Identities=20% Similarity=0.301 Sum_probs=94.8
Q ss_pred CcEEEEEECCEEEEEEEe--cCCCChhHHHHHHHHHH-CCCeEEEEcCCCHHHHHHHHHHcCCc----------------
Q 001981 771 RTCVLVAIDGRVAGAFAV--TDPVKPEAQIVVSSLRS-MEISSIMVTGDNWATANAIAKEVGIG---------------- 831 (986)
Q Consensus 771 ~~~i~va~~~~~~G~i~~--~d~~~~~~~~~i~~l~~-~gi~~~~~Tgd~~~~a~~~a~~~gi~---------------- 831 (986)
.+.+++-+||+++....= .-.+.++++++|++|++ .|+.++++||++......+.+.+++.
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~ 93 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGKT 93 (266)
T ss_pred CEEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcccceEEEeCCCeeecCCCCe
Confidence 467778889998753211 11567899999999998 79999999999999999888877750
Q ss_pred ---------------------------------------------------------------------eEEEecCc--c
Q 001981 832 ---------------------------------------------------------------------KVFAETDP--V 840 (986)
Q Consensus 832 ---------------------------------------------------------------------~~~~~~~p--~ 840 (986)
..+.++.| .
T Consensus 94 ~~~~l~~~~~~~i~~~l~~~~~~~pg~~ve~k~~~~~~h~r~~~~~~~~~~~l~~~i~~~~~~~~~~~g~~~lEi~p~g~ 173 (266)
T PRK10187 94 HIVHLPDAIARDISVQLHTALAQLPGAELEAKGMAFALHYRQAPQHEDALLALAQRITQIWPQLALQPGKCVVEIKPRGT 173 (266)
T ss_pred eeccCChhHHHHHHHHHHHHhccCCCcEEEeCCcEEEEECCCCCccHHHHHHHHHHHHhhCCceEEeCCCEEEEeeCCCC
Confidence 00111122 2
Q ss_pred cHHHHHHHHhHc----CCEEEEEcCCcccHHHHHhC----CceEEecCCcHHHHHhcCEEEeCCChhHHHHHHHH
Q 001981 841 GKANKIKELQLK----GMTVAMVGDGINDSPALVAA----DVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDL 907 (986)
Q Consensus 841 ~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A----~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~ 907 (986)
+|...++.+.+. .+.++++||+.||.+||+.+ ++||+||++. ..|++.+ ++..++..++..
T Consensus 174 ~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~----~~A~~~l--~~~~~v~~~L~~ 242 (266)
T PRK10187 174 NKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA----TQASWRL--AGVPDVWSWLEM 242 (266)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCC----CcCeEeC--CCHHHHHHHHHH
Confidence 455555554432 35799999999999999999 9999999875 3577776 467777766643
No 85
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.12 E-value=1.4e-05 Score=86.76 Aligned_cols=115 Identities=21% Similarity=0.261 Sum_probs=84.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec-----CcccH--HH----HHHHHhHcCCEEEE
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET-----DPVGK--AN----KIKELQLKGMTVAM 858 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~-----~p~~K--~~----~v~~l~~~g~~v~~ 858 (986)
.++.+++.++++.|+++|++++++||.+...+..+.+++|+..+|..+ .+..| .+ +++.+.-..+.++|
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l~ 179 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLF 179 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEEE
Confidence 467899999999999999999999999999999999999996654321 22223 23 33333334567999
Q ss_pred EcCCcccHHHHHhCCce---EEecC--CcHHHHHhcCEEEeCCChhHHHHHHH
Q 001981 859 VGDGINDSPALVAADVG---MAIGA--GTDVAIEAADIVLIKSSLEDVVTAID 906 (986)
Q Consensus 859 vGDg~nD~~al~~A~vg---ia~~~--~~~~~~~~ad~vl~~~~~~~l~~~i~ 906 (986)
|||+.||+.+.++|++. +..|. ..+.....+|+++ +++..+..++.
T Consensus 180 IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi--~~l~el~~~~~ 230 (272)
T PRK13223 180 VGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVI--DDLRALLPGCA 230 (272)
T ss_pred ECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEE--CCHHHHHHHHh
Confidence 99999999999999963 44442 2233445788887 56877776543
No 86
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.06 E-value=2.2e-05 Score=83.00 Aligned_cols=113 Identities=17% Similarity=0.052 Sum_probs=82.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec-----CcccH------HHHHHHHhHcCCEEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET-----DPVGK------ANKIKELQLKGMTVAMV 859 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~-----~p~~K------~~~v~~l~~~g~~v~~v 859 (986)
++.|++.+.++.|+++|+++.++|+.+...+..+.+++|+...|..+ .+..| ..+++.+....+.++||
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~I 174 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYV 174 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEEEe
Confidence 57899999999999999999999999999999999999997544221 11112 34555555556789999
Q ss_pred cCCcccHHHHHhCCce---EEecCC--c-HHHHHhcCEEEeCCChhHHHHHH
Q 001981 860 GDGINDSPALVAADVG---MAIGAG--T-DVAIEAADIVLIKSSLEDVVTAI 905 (986)
Q Consensus 860 GDg~nD~~al~~A~vg---ia~~~~--~-~~~~~~ad~vl~~~~~~~l~~~i 905 (986)
||+.+|..+.+.|++. +..|.. . ......+|+++ +++..+.+.+
T Consensus 175 GDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i--~~~~el~~~~ 224 (229)
T PRK13226 175 GDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLV--EQPQLLWNPA 224 (229)
T ss_pred CCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeee--CCHHHHHHHh
Confidence 9999999999999954 445532 1 22234688888 5566665543
No 87
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=98.02 E-value=2.1e-05 Score=84.66 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=67.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE-Eec---------Cccc--HHHHHHHHhHc-CCEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVF-AET---------DPVG--KANKIKELQLK-GMTVA 857 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~-~~~---------~p~~--K~~~v~~l~~~-g~~v~ 857 (986)
++.|++.+.++.|+++|+++.++||.....++.+.+++|+..+| ..+ .|.. =...++.+... .+.++
T Consensus 99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~l 178 (253)
T TIGR01422 99 SPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAACV 178 (253)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchheE
Confidence 56899999999999999999999999999999999999887654 221 1211 12333444332 45699
Q ss_pred EEcCCcccHHHHHhCCc---eEEecC
Q 001981 858 MVGDGINDSPALVAADV---GMAIGA 880 (986)
Q Consensus 858 ~vGDg~nD~~al~~A~v---gia~~~ 880 (986)
||||+.+|+.+.+.|++ ++..|.
T Consensus 179 ~IGDs~~Di~aA~~aGi~~i~v~~g~ 204 (253)
T TIGR01422 179 KVGDTVPDIEEGRNAGMWTVGLILSS 204 (253)
T ss_pred EECCcHHHHHHHHHCCCeEEEEecCC
Confidence 99999999999999994 454553
No 88
>PLN02382 probable sucrose-phosphatase
Probab=98.00 E-value=3.5e-05 Score=88.18 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=93.0
Q ss_pred EEEEEECCEEEEEEEecC--CCChhHHHHH-HHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc------------------
Q 001981 773 CVLVAIDGRVAGAFAVTD--PVKPEAQIVV-SSLRSMEISSIMVTGDNWATANAIAKEVGIG------------------ 831 (986)
Q Consensus 773 ~i~va~~~~~~G~i~~~d--~~~~~~~~~i-~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~------------------ 831 (986)
.++.-.|++++.- .| .+.+....++ ++++++|+.++++||++......+.+++++.
T Consensus 11 lI~sDLDGTLL~~---~~~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~~p~~~I~~nGt~I~~~~~ 87 (413)
T PLN02382 11 MIVSDLDHTMVDH---HDPENLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLLTPDITIMSVGTEIAYGES 87 (413)
T ss_pred EEEEcCCCcCcCC---CCccchhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCCCCCEEEEcCCcEEEeCCC
Confidence 3334457777743 13 3444455555 8899999999999999999999999999870
Q ss_pred --------------------------------------------------------------------e--------EEE
Q 001981 832 --------------------------------------------------------------------K--------VFA 835 (986)
Q Consensus 832 --------------------------------------------------------------------~--------~~~ 835 (986)
. .+.
T Consensus 88 ~~~d~~w~~~l~~~w~~~~v~~~~~~~~~l~~q~~~~~~~~Ki~~~~~~~~~~~~~~~l~~~~~~~g~~~~i~~s~~~~l 167 (413)
T PLN02382 88 MVPDHGWVEYLNKKWDREIVVEETSKFPELKLQPETEQRPHKVSFYVDKKKAQEVIKELSERLEKRGLDVKIIYSGGIDL 167 (413)
T ss_pred CccChhHHHHHhccCChhhHHHHHhcCCCcccCCcccCCCeEEEEEechHHhHHHHHHHHHHHHhcCCcEEEEEECCcEE
Confidence 0 011
Q ss_pred ecCcc--cHHHHHHHHhHc-------CCEEEEEcCCcccHHHHHhCC-ceEEecCCcHHHHHhc--------CEEEe-CC
Q 001981 836 ETDPV--GKANKIKELQLK-------GMTVAMVGDGINDSPALVAAD-VGMAIGAGTDVAIEAA--------DIVLI-KS 896 (986)
Q Consensus 836 ~~~p~--~K~~~v~~l~~~-------g~~v~~vGDg~nD~~al~~A~-vgia~~~~~~~~~~~a--------d~vl~-~~ 896 (986)
++.|. .|...++.|.+. .+.++++||+.||.+||+.++ .||+|+|+.+..++.+ ++++. ++
T Consensus 168 dI~p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA~~elk~~a~~~~~~~~~~~~a~~~ 247 (413)
T PLN02382 168 DVLPQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNAQEELLQWYAENAKDNPKIIHATER 247 (413)
T ss_pred EEEeCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCCcHHHHHHHHhhccCCCcEEEcCCC
Confidence 22332 477767666544 247999999999999999999 6999999999888743 55543 34
Q ss_pred ChhHHHHHHH
Q 001981 897 SLEDVVTAID 906 (986)
Q Consensus 897 ~~~~l~~~i~ 906 (986)
+-.++.++|+
T Consensus 248 ~~~GI~~al~ 257 (413)
T PLN02382 248 CAAGIIQAIG 257 (413)
T ss_pred CccHHHHHHH
Confidence 5667776664
No 89
>PRK08238 hypothetical protein; Validated
Probab=97.98 E-value=6.6e-05 Score=87.17 Aligned_cols=92 Identities=23% Similarity=0.282 Sum_probs=75.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC-ceEEEe-----cCcccHHHHHHHHhHcCCEEEEEcCCcc
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI-GKVFAE-----TDPVGKANKIKELQLKGMTVAMVGDGIN 864 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi-~~~~~~-----~~p~~K~~~v~~l~~~g~~v~~vGDg~n 864 (986)
++++++.+.+++++++|++++++|+.+...++.+++++|+ +.+.+. ..|+.|.+.+++...+ +.+.++||+.+
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlFd~Vigsd~~~~~kg~~K~~~l~~~l~~-~~~~yvGDS~~ 150 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLFDGVFASDGTTNLKGAAKAAALVEAFGE-RGFDYAGNSAA 150 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCEEEeCCCccccCCchHHHHHHHHhCc-cCeeEecCCHH
Confidence 4789999999999999999999999999999999999997 666543 3566777655533222 22789999999
Q ss_pred cHHHHHhCCceEEecCCcH
Q 001981 865 DSPALVAADVGMAIGAGTD 883 (986)
Q Consensus 865 D~~al~~A~vgia~~~~~~ 883 (986)
|.++++.|+-+++++.+..
T Consensus 151 Dlp~~~~A~~av~Vn~~~~ 169 (479)
T PRK08238 151 DLPVWAAARRAIVVGASPG 169 (479)
T ss_pred HHHHHHhCCCeEEECCCHH
Confidence 9999999999999986544
No 90
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.97 E-value=3.8e-05 Score=82.24 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=79.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec-----C--cccH----HHHHHHHhHcCCEEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET-----D--PVGK----ANKIKELQLKGMTVAMV 859 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~-----~--p~~K----~~~v~~l~~~g~~v~~v 859 (986)
++.|++.++++.|+++|+++.++|+.+...+....+.+|+..+|..+ . ++.+ ..+++.+....+.++||
T Consensus 108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~v 187 (248)
T PLN02770 108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTFVF 187 (248)
T ss_pred CcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEEEE
Confidence 57899999999999999999999999999999999999997655432 1 1122 33444454455779999
Q ss_pred cCCcccHHHHHhCCce---EEecCCcH-HHHHhcCEEEeCCChhH
Q 001981 860 GDGINDSPALVAADVG---MAIGAGTD-VAIEAADIVLIKSSLED 900 (986)
Q Consensus 860 GDg~nD~~al~~A~vg---ia~~~~~~-~~~~~ad~vl~~~~~~~ 900 (986)
||+.+|..+.++|++- +..|...+ .....+|+++. ++..
T Consensus 188 gDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~--~~~e 230 (248)
T PLN02770 188 EDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIK--DYED 230 (248)
T ss_pred cCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEec--cchh
Confidence 9999999999999954 44443222 22336788773 4444
No 91
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.95 E-value=2.6e-05 Score=82.15 Aligned_cols=111 Identities=15% Similarity=0.150 Sum_probs=80.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec-------CcccHHHHHHH-HhH---cCCEEEE
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET-------DPVGKANKIKE-LQL---KGMTVAM 858 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~-------~p~~K~~~v~~-l~~---~g~~v~~ 858 (986)
-++.|++.++++.|+++|++++++|+......+.+.+++|+..+|..+ .++.+.+.++. +++ ..++++|
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~ 170 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVA 170 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeEE
Confidence 468899999999999999999999999999999999999997766443 12222333333 333 3467999
Q ss_pred EcCCcccHHHHHhCCceEE-ecCC---cHHHHHhcCEEEeCCChhHHH
Q 001981 859 VGDGINDSPALVAADVGMA-IGAG---TDVAIEAADIVLIKSSLEDVV 902 (986)
Q Consensus 859 vGDg~nD~~al~~A~vgia-~~~~---~~~~~~~ad~vl~~~~~~~l~ 902 (986)
|||+.+|+.+.+.|++... +..+ .+.....+|+++ .++..+.
T Consensus 171 igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~--~~~~dl~ 216 (222)
T PRK10826 171 LEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKL--ESLTELT 216 (222)
T ss_pred EcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheec--cCHHHHh
Confidence 9999999999999997633 3222 112233577776 4466654
No 92
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.89 E-value=6.2e-05 Score=80.85 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=79.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec-----C--cccH----HHHHHHHhHcCCEEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET-----D--PVGK----ANKIKELQLKGMTVAMV 859 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~-----~--p~~K----~~~v~~l~~~g~~v~~v 859 (986)
++.+++.++++.|+++|+++.++|+.+...+..+.+.+|+..+|..+ . ++.+ ...++.+.-..+.++||
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~I 188 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVF 188 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEEE
Confidence 56899999999999999999999999999999999999996544322 1 1122 23444444445679999
Q ss_pred cCCcccHHHHHhCCce-EEe-cCCcHHHHHhcCEEEeCCChhHHH
Q 001981 860 GDGINDSPALVAADVG-MAI-GAGTDVAIEAADIVLIKSSLEDVV 902 (986)
Q Consensus 860 GDg~nD~~al~~A~vg-ia~-~~~~~~~~~~ad~vl~~~~~~~l~ 902 (986)
||+.+|+.|.++|++- |++ |.........+|+++ +++..+.
T Consensus 189 gDs~~Di~aA~~aG~~~i~v~g~~~~~~l~~ad~vi--~~~~el~ 231 (260)
T PLN03243 189 GNSNSSVEAAHDGCMKCVAVAGKHPVYELSAGDLVV--RRLDDLS 231 (260)
T ss_pred cCCHHHHHHHHHcCCEEEEEecCCchhhhccCCEEe--CCHHHHH
Confidence 9999999999999964 333 333233334578776 4455543
No 93
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.87 E-value=6.8e-05 Score=81.37 Aligned_cols=114 Identities=17% Similarity=0.202 Sum_probs=79.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE-----Ee-cCcccH--H----HHHHHHhHc-CCEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVF-----AE-TDPVGK--A----NKIKELQLK-GMTVA 857 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~-----~~-~~p~~K--~----~~v~~l~~~-g~~v~ 857 (986)
.+.|++.++++.|+++|+++.++||.....+..+.+.+|+..++ +. -.+..| . ..++.+... .+.++
T Consensus 101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~l 180 (267)
T PRK13478 101 TPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAACV 180 (267)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcceE
Confidence 56899999999999999999999999999998888877764432 11 111112 2 233333322 35799
Q ss_pred EEcCCcccHHHHHhCCc---eEEecCCc-------------------------HHHHHhcCEEEeCCChhHHHHHHH
Q 001981 858 MVGDGINDSPALVAADV---GMAIGAGT-------------------------DVAIEAADIVLIKSSLEDVVTAID 906 (986)
Q Consensus 858 ~vGDg~nD~~al~~A~v---gia~~~~~-------------------------~~~~~~ad~vl~~~~~~~l~~~i~ 906 (986)
||||+.+|+.+.+.|++ ++..|... +.....+|+++ +++..+...++
T Consensus 181 ~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~vi--~~~~~l~~~l~ 255 (267)
T PRK13478 181 KVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRAAGAHYVI--DTIADLPAVIA 255 (267)
T ss_pred EEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHHcCCCeeh--hhHHHHHHHHH
Confidence 99999999999999995 55555331 12233578877 66777777663
No 94
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.86 E-value=5.4e-05 Score=72.40 Aligned_cols=85 Identities=21% Similarity=0.253 Sum_probs=65.1
Q ss_pred cCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc----eEEEec-C--c----------------ccHH--
Q 001981 789 TDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG----KVFAET-D--P----------------VGKA-- 843 (986)
Q Consensus 789 ~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~----~~~~~~-~--p----------------~~K~-- 843 (986)
..++.+++.+.+++|+++|++++++||.....++.+.+++|+. .++..- . + ..|.
T Consensus 22 ~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (139)
T cd01427 22 ELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDK 101 (139)
T ss_pred cCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHHH
Confidence 4588999999999999999999999999999999999999983 333211 0 0 2233
Q ss_pred --HHHHHHhHcCCEEEEEcCCcccHHHHHhCC
Q 001981 844 --NKIKELQLKGMTVAMVGDGINDSPALVAAD 873 (986)
Q Consensus 844 --~~v~~l~~~g~~v~~vGDg~nD~~al~~A~ 873 (986)
.+.+.+....+.++++||+.+|..+++.++
T Consensus 102 ~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g 133 (139)
T cd01427 102 LLAALKLLGVDPEEVLMVGDSLNDIEMAKAAG 133 (139)
T ss_pred HHHHHHHcCCChhhEEEeCCCHHHHHHHHHcC
Confidence 333444334567999999999999999854
No 95
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.85 E-value=2.8e-05 Score=93.48 Aligned_cols=66 Identities=39% Similarity=0.705 Sum_probs=61.1
Q ss_pred EEEEeecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCC-hhHHHHHHHhcCCCccc
Q 001981 125 VCRLRIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTD-TDHIVEAIEDAGFGADL 191 (986)
Q Consensus 125 ~~~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~-~~~i~~~i~~~Gy~~~~ 191 (986)
+.++.++||+|++|+++|| .+++++||.++.+|+.++++.+.|++...+ .+.+...+++.||.+..
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 5789999999999999999 999999999999999999999999987666 78999999999998753
No 96
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.84 E-value=7.1e-05 Score=87.78 Aligned_cols=117 Identities=16% Similarity=0.212 Sum_probs=86.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec------CcccHHHHHHHHhH--cCCEEEEEcCC
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET------DPVGKANKIKELQL--KGMTVAMVGDG 862 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~------~p~~K~~~v~~l~~--~g~~v~~vGDg 862 (986)
++.||+.+.++.|+++|+++.++|+.....+..+.+.+|+..+|..+ .+..|.+.+....+ ..+.++||||+
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l~~~~~v~VGDs 409 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKYDIKEAAVVGDR 409 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhcCcceEEEEeCC
Confidence 67899999999999999999999999999999999999997655432 11234343333322 24679999999
Q ss_pred cccHHHHHhCCce-EEe--cCCcHHHHHhcCEEEeCCChhHHHHHHHHHH
Q 001981 863 INDSPALVAADVG-MAI--GAGTDVAIEAADIVLIKSSLEDVVTAIDLSR 909 (986)
Q Consensus 863 ~nD~~al~~A~vg-ia~--~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r 909 (986)
.+|+.+.+.|++- |.+ +...+.....+|+++ +++..+..++...+
T Consensus 410 ~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i--~~l~el~~~l~~~~ 457 (459)
T PRK06698 410 LSDINAAKDNGLIAIGCNFDFAQEDELAQADIVI--DDLLELKGILSTVQ 457 (459)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEe--CCHHHHHHHHHHHh
Confidence 9999999999963 333 333322334688887 56888877765443
No 97
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.78 E-value=9.5e-05 Score=77.74 Aligned_cols=114 Identities=24% Similarity=0.244 Sum_probs=80.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc--eEEEec----C---cccHHHH----HHHHhHc-CCE
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG--KVFAET----D---PVGKANK----IKELQLK-GMT 855 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~--~~~~~~----~---p~~K~~~----v~~l~~~-g~~ 855 (986)
.++.+|+.+.++.|+++|+++.++|+........+.+.+|+. ++|..+ . .+.+.++ ++++... .+.
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 165 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQS 165 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhH
Confidence 478999999999999999999999999999999999999986 544322 1 1112233 3333333 367
Q ss_pred EEEEcCCcccHHHHHhCCceE--EecCC--cH-HH-HHhcCEEEeCCChhHHHHHH
Q 001981 856 VAMVGDGINDSPALVAADVGM--AIGAG--TD-VA-IEAADIVLIKSSLEDVVTAI 905 (986)
Q Consensus 856 v~~vGDg~nD~~al~~A~vgi--a~~~~--~~-~~-~~~ad~vl~~~~~~~l~~~i 905 (986)
++||||+.+|+.+.++|++.. ++..+ .. .. ...+++++ +++..+..++
T Consensus 166 ~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i--~~~~~l~~~~ 219 (220)
T TIGR03351 166 VAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVL--DSVADLPALL 219 (220)
T ss_pred eEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceee--cCHHHHHHhh
Confidence 999999999999999999875 23222 22 22 23467776 5576665543
No 98
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.71 E-value=0.00013 Score=76.49 Aligned_cols=88 Identities=19% Similarity=0.080 Sum_probs=65.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCC----CHHHHHHHHHHcCCceEEEec-----CcccHHHHHHHHhHcCCEEEEEcC
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGD----NWATANAIAKEVGIGKVFAET-----DPVGKANKIKELQLKGMTVAMVGD 861 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd----~~~~a~~~a~~~gi~~~~~~~-----~p~~K~~~v~~l~~~g~~v~~vGD 861 (986)
.+.+++++.++.|+++|+++.++|++ ...+++.+.+.+|+++.|..+ ....|......+++.+ .++|+||
T Consensus 114 ~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~~l~~~~-i~i~vGD 192 (237)
T TIGR01672 114 IPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQWIQDKN-IRIHYGD 192 (237)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHHHHHHhCC-CeEEEeC
Confidence 34556999999999999999999998 778999999999997655332 1111122223444444 4899999
Q ss_pred CcccHHHHHhCCc---eEEec
Q 001981 862 GINDSPALVAADV---GMAIG 879 (986)
Q Consensus 862 g~nD~~al~~A~v---gia~~ 879 (986)
..||..+.+.|++ ++.+|
T Consensus 193 s~~DI~aAk~AGi~~I~V~~g 213 (237)
T TIGR01672 193 SDNDITAAKEAGARGIRILRA 213 (237)
T ss_pred CHHHHHHHHHCCCCEEEEEec
Confidence 9999999999994 45555
No 99
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.71 E-value=0.00019 Score=80.15 Aligned_cols=109 Identities=18% Similarity=0.235 Sum_probs=80.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec---------Ccc--cHHHHHHHHhHcCCEEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET---------DPV--GKANKIKELQLKGMTVAMV 859 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~---------~p~--~K~~~v~~l~~~g~~v~~v 859 (986)
.+.+|+.+.++.|+++|+++.++|+.+...+..+.+.+|+..+|..+ .|+ -=...++.+.-..+.++||
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl~I 295 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIVF 295 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEEEE
Confidence 47899999999999999999999999999999999999997655433 111 1133455555556789999
Q ss_pred cCCcccHHHHHhCCce-EEecCCcHH-HHHhcCEEEeCCChhHH
Q 001981 860 GDGINDSPALVAADVG-MAIGAGTDV-AIEAADIVLIKSSLEDV 901 (986)
Q Consensus 860 GDg~nD~~al~~A~vg-ia~~~~~~~-~~~~ad~vl~~~~~~~l 901 (986)
||..+|+.|.+.|++- |++..+.+. ....+|+++ +++..+
T Consensus 296 GDS~~DIeAAk~AGm~~IgV~~~~~~~~l~~Ad~iI--~s~~EL 337 (381)
T PLN02575 296 GNSNQTVEAAHDARMKCVAVASKHPIYELGAADLVV--RRLDEL 337 (381)
T ss_pred cCCHHHHHHHHHcCCEEEEECCCCChhHhcCCCEEE--CCHHHH
Confidence 9999999999999965 333332222 223578776 556655
No 100
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.69 E-value=0.00025 Score=67.69 Aligned_cols=109 Identities=20% Similarity=0.293 Sum_probs=92.2
Q ss_pred HHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecCcccHH
Q 001981 764 MKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKA 843 (986)
Q Consensus 764 ~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~ 843 (986)
+.+.+.|.+.+.+-.|++++..= ..+..|+.++-+..++++|+++.++|+.++..+...++.+|++-++....|-.+.
T Consensus 21 ~~L~~~Gikgvi~DlDNTLv~wd--~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~~~ 98 (175)
T COG2179 21 DILKAHGIKGVILDLDNTLVPWD--NPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKPFGRA 98 (175)
T ss_pred HHHHHcCCcEEEEeccCceeccc--CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecccCccHHH
Confidence 45678899999999999987763 4466899999999999999999999999999999999999999998888886653
Q ss_pred --HHHHHHhHcCCEEEEEcCC-cccHHHHHhCCc
Q 001981 844 --NKIKELQLKGMTVAMVGDG-INDSPALVAADV 874 (986)
Q Consensus 844 --~~v~~l~~~g~~v~~vGDg-~nD~~al~~A~v 874 (986)
+.++.++-..++|+||||. ..|+-+-+.+++
T Consensus 99 fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~ 132 (175)
T COG2179 99 FRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGM 132 (175)
T ss_pred HHHHHHHcCCChhHEEEEcchhhhhhhcccccCc
Confidence 4566666667889999999 678888777774
No 101
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=97.69 E-value=0.00042 Score=73.82 Aligned_cols=116 Identities=16% Similarity=0.238 Sum_probs=84.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc----eEEEec-----------C--c----ccHHHHHHH
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG----KVFAET-----------D--P----VGKANKIKE 848 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~----~~~~~~-----------~--p----~~K~~~v~~ 848 (986)
-+++||+.+.++.|+++|+++.++||-....+..+.+++|+. .++++. . | ..|.+.+..
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~ 199 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVAL 199 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHHH
Confidence 467999999999999999999999999999999999999994 442221 1 2 246554432
Q ss_pred -----Hh--HcCCEEEEEcCCcccHHHHHhC---CceEEec--CC-----cHHHHHhcCEEEeCCChhHHHHHH
Q 001981 849 -----LQ--LKGMTVAMVGDGINDSPALVAA---DVGMAIG--AG-----TDVAIEAADIVLIKSSLEDVVTAI 905 (986)
Q Consensus 849 -----l~--~~g~~v~~vGDg~nD~~al~~A---~vgia~~--~~-----~~~~~~~ad~vl~~~~~~~l~~~i 905 (986)
+. .....|+++|||.||++|..-. .--+.+| +. -+.-+++-|+|+.+|.--.++..|
T Consensus 200 ~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~D~t~~v~~~i 273 (277)
T TIGR01544 200 RNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDETLEVANSI 273 (277)
T ss_pred HHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEECCCCchHHHHH
Confidence 22 2346799999999999997655 1234444 32 233456889999998877777655
No 102
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.67 E-value=0.00041 Score=73.68 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=47.7
Q ss_pred cEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Q 001981 772 TCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI 830 (986)
Q Consensus 772 ~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi 830 (986)
+.++.-.||+++-- .+...+.++++|++|+++|+.++++||+.......+.+++|+
T Consensus 2 KLIftDLDGTLLd~---~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl 57 (302)
T PRK12702 2 RLVLSSLDGSLLDL---EFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRL 57 (302)
T ss_pred cEEEEeCCCCCcCC---CCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence 35566678877642 455778899999999999999999999999999999999998
No 103
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.62 E-value=0.00043 Score=72.80 Aligned_cols=52 Identities=15% Similarity=0.288 Sum_probs=44.0
Q ss_pred EEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Q 001981 775 LVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI 830 (986)
Q Consensus 775 ~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi 830 (986)
++-.||+++- .+...+++.++|++|+++|++++++||++...+..+.+++|+
T Consensus 3 ~~DlDGTLl~----~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 3 FTDLDGTLLP----PGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred EEeCCCCCcC----CCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 4445666654 456677899999999999999999999999999999999997
No 104
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.61 E-value=0.00036 Score=66.77 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=75.1
Q ss_pred EEEEEECCEEEEEEEe-----cCCCChhHHHHHHHHHHCCCeEEEEcCCC--------HHHHHHHHHHcCCceEEEec--
Q 001981 773 CVLVAIDGRVAGAFAV-----TDPVKPEAQIVVSSLRSMEISSIMVTGDN--------WATANAIAKEVGIGKVFAET-- 837 (986)
Q Consensus 773 ~i~va~~~~~~G~i~~-----~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~--------~~~a~~~a~~~gi~~~~~~~-- 837 (986)
.+.+-+|+++..-... +-.+.+++.++++.|++.|++++++|+.. ......+.+.+|+...+.-.
T Consensus 2 ~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 81 (132)
T TIGR01662 2 GVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYACP 81 (132)
T ss_pred EEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 4667778887742111 23678999999999999999999999998 78888999999996333221
Q ss_pred -CcccHH----HHHHHHh-HcCCEEEEEcC-CcccHHHHHhCCce
Q 001981 838 -DPVGKA----NKIKELQ-LKGMTVAMVGD-GINDSPALVAADVG 875 (986)
Q Consensus 838 -~p~~K~----~~v~~l~-~~g~~v~~vGD-g~nD~~al~~A~vg 875 (986)
.++.+. .+++.++ -..+.++|||| ..+|+.+.+.+++-
T Consensus 82 ~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~ 126 (132)
T TIGR01662 82 HCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLA 126 (132)
T ss_pred CCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCe
Confidence 112233 3444442 44577999999 69999999999864
No 105
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.60 E-value=0.00033 Score=70.17 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=79.3
Q ss_pred HhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCC-HHHHHHHHHHcCCceEEEecCcccH--H
Q 001981 767 EQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDN-WATANAIAKEVGIGKVFAETDPVGK--A 843 (986)
Q Consensus 767 ~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~-~~~a~~~a~~~gi~~~~~~~~p~~K--~ 843 (986)
...+.+.+++..|+++.-. -...+.+++.++++.|++.|++++++|+.+ ...+..+.+.+|+..++....|... .
T Consensus 21 ~~~~v~~vv~D~Dgtl~~~--~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~~~~KP~p~~~~ 98 (170)
T TIGR01668 21 KKVGIKGVVLDKDNTLVYP--DHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLPHAVKPPGCAFR 98 (170)
T ss_pred HHCCCCEEEEecCCccccC--CCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEcCCCCCChHHHH
Confidence 4567788888888776522 133678999999999999999999999988 6788888899998655433333322 2
Q ss_pred HHHHHHhHcCCEEEEEcCCc-ccHHHHHhCCce
Q 001981 844 NKIKELQLKGMTVAMVGDGI-NDSPALVAADVG 875 (986)
Q Consensus 844 ~~v~~l~~~g~~v~~vGDg~-nD~~al~~A~vg 875 (986)
.+++.+....+.++||||.. .|..+.+.+++-
T Consensus 99 ~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~ 131 (170)
T TIGR01668 99 RAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSY 131 (170)
T ss_pred HHHHHcCCCHHHEEEECCcchHHHHHHHHcCCe
Confidence 23333333456799999998 799999999964
No 106
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.60 E-value=0.00014 Score=76.64 Aligned_cols=92 Identities=11% Similarity=0.094 Sum_probs=69.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEe-----cC--cccHHHHHH----HHhHcCCEEEE
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAE-----TD--PVGKANKIK----ELQLKGMTVAM 858 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~-----~~--p~~K~~~v~----~l~~~g~~v~~ 858 (986)
-++.|++.+.++.|+++|+++.++|+.+...+....+.+|+..+|.. .. ++.+.++.. .+.-..+.++|
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 171 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLF 171 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEE
Confidence 36789999999999999999999999999999988899998543321 11 222233333 33334567999
Q ss_pred EcCCcccHHHHHhCCce--EEecCC
Q 001981 859 VGDGINDSPALVAADVG--MAIGAG 881 (986)
Q Consensus 859 vGDg~nD~~al~~A~vg--ia~~~~ 881 (986)
|||+.+|+.+.++|++. +++.++
T Consensus 172 igDs~~di~aA~~aG~~~~~~v~~~ 196 (224)
T PRK14988 172 IDDSEPILDAAAQFGIRYCLGVTNP 196 (224)
T ss_pred EcCCHHHHHHHHHcCCeEEEEEeCC
Confidence 99999999999999985 444443
No 107
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.59 E-value=0.00054 Score=85.03 Aligned_cols=142 Identities=17% Similarity=0.218 Sum_probs=101.6
Q ss_pred hHHHHHHHHhccCcEEEEEECCEEEEEEEe--cCCCChhHHHHHHHHHH-CCCeEEEEcCCCHHHHHHHHHHcCCc----
Q 001981 759 VDDYMMKNEQLARTCVLVAIDGRVAGAFAV--TDPVKPEAQIVVSSLRS-MEISSIMVTGDNWATANAIAKEVGIG---- 831 (986)
Q Consensus 759 ~~~~~~~~~~~g~~~i~va~~~~~~G~i~~--~d~~~~~~~~~i~~l~~-~gi~~~~~Tgd~~~~a~~~a~~~gi~---- 831 (986)
.+.....+....++.+++-+||+++..-.- ...+.+++.++|++|++ .|+.++++||++....+.+...+++.
T Consensus 480 ~~~~~~~y~~~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~l~liae 559 (726)
T PRK14501 480 AEEIIARYRAASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLPIHLVAE 559 (726)
T ss_pred HHHHHHHHHhccceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCCeEEEEe
Confidence 445566676667889999999999864211 12467899999999999 59999999999999998887766650
Q ss_pred --------------------------------------------------------------------------------
Q 001981 832 -------------------------------------------------------------------------------- 831 (986)
Q Consensus 832 -------------------------------------------------------------------------------- 831 (986)
T Consensus 560 nG~~i~~~~~~w~~~~~~~~~w~~~v~~il~~~~~~~~gs~ie~k~~~l~~~~r~~d~~~~~~~a~~l~~~l~~~~~~~~ 639 (726)
T PRK14501 560 HGAWSRAPGGEWQLLEPVATEWKDAVRPILEEFVDRTPGSFIEEKEASLAWHYRNADPELGEARANELILALSSLLSNAP 639 (726)
T ss_pred CCEEEeCCCCceEECCCcchhHHHHHHHHHHHHHhcCCCcEEEEcceEEEEEccCCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence
Q ss_pred ------eEEEecCc--ccHHHHHHHHhHc--CCEEEEEcCCcccHHHHHhC---CceEEecCCcHHHHHhcCEEEeCCCh
Q 001981 832 ------KVFAETDP--VGKANKIKELQLK--GMTVAMVGDGINDSPALVAA---DVGMAIGAGTDVAIEAADIVLIKSSL 898 (986)
Q Consensus 832 ------~~~~~~~p--~~K~~~v~~l~~~--g~~v~~vGDg~nD~~al~~A---~vgia~~~~~~~~~~~ad~vl~~~~~ 898 (986)
..+-++.| -+|...++.+.+. ...++++||+.||.+||+.+ +++|++|++ ..+|++.+.+ .
T Consensus 640 ~~v~~g~~~veV~p~~vnKG~al~~ll~~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~----~s~A~~~l~~--~ 713 (726)
T PRK14501 640 LEVLRGNKVVEVRPAGVNKGRAVRRLLEAGPYDFVLAIGDDTTDEDMFRALPETAITVKVGPG----ESRARYRLPS--Q 713 (726)
T ss_pred eEEEECCeEEEEEECCCCHHHHHHHHHhcCCCCEEEEECCCCChHHHHHhcccCceEEEECCC----CCcceEeCCC--H
Confidence 00011112 2465555555542 25799999999999999996 688999875 3578888854 4
Q ss_pred hHHHHHHH
Q 001981 899 EDVVTAID 906 (986)
Q Consensus 899 ~~l~~~i~ 906 (986)
..+..+++
T Consensus 714 ~eV~~~L~ 721 (726)
T PRK14501 714 REVRELLR 721 (726)
T ss_pred HHHHHHHH
Confidence 55666554
No 108
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.58 E-value=0.00019 Score=75.48 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=68.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec---------CcccH--HHHHHHHhHcCCEEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET---------DPVGK--ANKIKELQLKGMTVAMV 859 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~---------~p~~K--~~~v~~l~~~g~~v~~v 859 (986)
++.|++.++++.|+++|++++++|+.+........+.+|+..+|..+ .|... ..+.+.+....+.++||
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~i 173 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMV 173 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEE
Confidence 57899999999999999999999999988889999999997655332 12111 22333443345679999
Q ss_pred cCCc-ccHHHHHhCCce-EEec
Q 001981 860 GDGI-NDSPALVAADVG-MAIG 879 (986)
Q Consensus 860 GDg~-nD~~al~~A~vg-ia~~ 879 (986)
||+. +|+.+.++|++- |.+.
T Consensus 174 gDs~~~di~~A~~aG~~~i~~~ 195 (221)
T TIGR02253 174 GDRLDKDIKGAKNLGMKTVWIN 195 (221)
T ss_pred CCChHHHHHHHHHCCCEEEEEC
Confidence 9998 999999999964 4444
No 109
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.58 E-value=0.0003 Score=82.92 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=47.0
Q ss_pred CcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Q 001981 771 RTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI 830 (986)
Q Consensus 771 ~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi 830 (986)
++.++.-.||+++.- .+...+.+.++|++|+++|+.++++||+.......+++++|+
T Consensus 416 ~KLIfsDLDGTLLd~---d~~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl 472 (694)
T PRK14502 416 KKIVYTDLDGTLLNP---LTYSYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGI 472 (694)
T ss_pred eeEEEEECcCCCcCC---CCccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 356677778887642 223556789999999999999999999999999999999986
No 110
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.55 E-value=0.00019 Score=74.09 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=65.1
Q ss_pred cCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec--------Cc--ccHHHHHHHHhHcCCEEEE
Q 001981 789 TDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET--------DP--VGKANKIKELQLKGMTVAM 858 (986)
Q Consensus 789 ~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~--------~p--~~K~~~v~~l~~~g~~v~~ 858 (986)
.+++.++..++++.|++.|+++.++||.+...+..+.+.+|+..+|..+ .| +.-..+++.+....+.++|
T Consensus 104 ~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~ 183 (197)
T TIGR01548 104 EDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLILAAKALGVEACHAAM 183 (197)
T ss_pred ccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCcCcccEEE
Confidence 3446667799999999999999999999999999999999997655322 12 2223445555555678999
Q ss_pred EcCCcccHHHHHhC
Q 001981 859 VGDGINDSPALVAA 872 (986)
Q Consensus 859 vGDg~nD~~al~~A 872 (986)
|||+.+|+.+.++|
T Consensus 184 vGD~~~Di~aA~~a 197 (197)
T TIGR01548 184 VGDTVDDIITGRKA 197 (197)
T ss_pred EeCCHHHHHHHHhC
Confidence 99999999998765
No 111
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.55 E-value=0.00028 Score=73.92 Aligned_cols=81 Identities=21% Similarity=0.165 Sum_probs=62.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCC----CHHHHHHHHHHcCC--ceEEEec----Cc--ccHHHHHHHHhHcCCEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGD----NWATANAIAKEVGI--GKVFAET----DP--VGKANKIKELQLKGMTVAM 858 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd----~~~~a~~~a~~~gi--~~~~~~~----~p--~~K~~~v~~l~~~g~~v~~ 858 (986)
.+.+++++.++.|+++|+++.++||+ ...+++.+.+.+|+ ++.|..+ .. .+|... +++.+ .++|
T Consensus 114 ~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~~---l~~~~-i~I~ 189 (237)
T PRK11009 114 IPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQW---LKKKN-IRIF 189 (237)
T ss_pred cchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHHH---HHhcC-CeEE
Confidence 46788999999999999999999996 46789999999999 5433222 11 345554 34444 4899
Q ss_pred EcCCcccHHHHHhCCce
Q 001981 859 VGDGINDSPALVAADVG 875 (986)
Q Consensus 859 vGDg~nD~~al~~A~vg 875 (986)
+||..+|..+.+.|++-
T Consensus 190 IGDs~~Di~aA~~AGi~ 206 (237)
T PRK11009 190 YGDSDNDITAAREAGAR 206 (237)
T ss_pred EcCCHHHHHHHHHcCCc
Confidence 99999999999999943
No 112
>PTZ00174 phosphomannomutase; Provisional
Probab=97.55 E-value=0.00046 Score=73.85 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=43.4
Q ss_pred CcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH
Q 001981 771 RTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKE 827 (986)
Q Consensus 771 ~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~ 827 (986)
.+.+++-.||+++. =..++.+.++++|++++++|++++++||++........+.
T Consensus 5 ~klia~DlDGTLL~---~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~~ 58 (247)
T PTZ00174 5 KTILLFDVDGTLTK---PRNPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLGE 58 (247)
T ss_pred CeEEEEECcCCCcC---CCCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhh
Confidence 45666777887762 2336899999999999999999999999999887776653
No 113
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.51 E-value=0.00042 Score=71.87 Aligned_cols=54 Identities=20% Similarity=0.431 Sum_probs=44.3
Q ss_pred EEEEECCEEEEEEEec-CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Q 001981 774 VLVAIDGRVAGAFAVT-DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI 830 (986)
Q Consensus 774 i~va~~~~~~G~i~~~-d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi 830 (986)
+++-.||+++.- . -++.+.+.++|++|++.|++++++||+.......+.+.++.
T Consensus 2 i~~D~DgTL~~~---~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~ 56 (204)
T TIGR01484 2 LFFDLDGTLLDP---NAHELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLPL 56 (204)
T ss_pred EEEeCcCCCcCC---CCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCCC
Confidence 345567777651 1 25789999999999999999999999999999999988654
No 114
>PRK11590 hypothetical protein; Provisional
Probab=97.51 E-value=0.00062 Score=70.94 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=72.8
Q ss_pred CCChhHHHHH-HHHHHCCCeEEEEcCCCHHHHHHHHHHcCC---ceEEE-e-------------cCcccHHHHHHHH-hH
Q 001981 791 PVKPEAQIVV-SSLRSMEISSIMVTGDNWATANAIAKEVGI---GKVFA-E-------------TDPVGKANKIKEL-QL 851 (986)
Q Consensus 791 ~~~~~~~~~i-~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi---~~~~~-~-------------~~p~~K~~~v~~l-~~ 851 (986)
.+.|++.+.| +.|++.|++++++|+.....++.+++.+|+ +++.+ + +..++|...++.. ..
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~~~~ 174 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERKIGT 174 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHHHHhCC
Confidence 4589999999 678889999999999999999999999994 43332 1 2346788766654 33
Q ss_pred cCCEEEEEcCCcccHHHHHhCCceEEecCC
Q 001981 852 KGMTVAMVGDGINDSPALVAADVGMAIGAG 881 (986)
Q Consensus 852 ~g~~v~~vGDg~nD~~al~~A~vgia~~~~ 881 (986)
......+-||+.||.|+|+.|+.+++++..
T Consensus 175 ~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~ 204 (211)
T PRK11590 175 PLRLYSGYSDSKQDNPLLYFCQHRWRVTPR 204 (211)
T ss_pred CcceEEEecCCcccHHHHHhCCCCEEECcc
Confidence 445667999999999999999999999643
No 115
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.51 E-value=0.00067 Score=68.87 Aligned_cols=114 Identities=23% Similarity=0.248 Sum_probs=72.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCH---------------HHHHHHHHHcCC--ceEEEec----------Cc--cc
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNW---------------ATANAIAKEVGI--GKVFAET----------DP--VG 841 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~---------------~~a~~~a~~~gi--~~~~~~~----------~p--~~ 841 (986)
.+.|++.+++++|+++|++++++|+.+. .....+.+++|+ +.++... .| +-
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f~~i~~~~~~~~~~~~~~KP~p~~ 108 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRLDGIYYCPHHPEDGCDCRKPKPGM 108 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcCCCCCHHH
Confidence 3579999999999999999999998762 222334556665 4444211 11 11
Q ss_pred HHHHHHHHhHcCCEEEEEcCCcccHHHHHhCCce-EEe--cCCcHH-HHHhc--CEEEeCCChhHHHHHHH
Q 001981 842 KANKIKELQLKGMTVAMVGDGINDSPALVAADVG-MAI--GAGTDV-AIEAA--DIVLIKSSLEDVVTAID 906 (986)
Q Consensus 842 K~~~v~~l~~~g~~v~~vGDg~nD~~al~~A~vg-ia~--~~~~~~-~~~~a--d~vl~~~~~~~l~~~i~ 906 (986)
-..+++.+....+.++||||+.+|+.+.++|++. |.+ |..... ....+ |+++ +++..+.+++.
T Consensus 109 ~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii--~~l~el~~~l~ 177 (181)
T PRK08942 109 LLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVL--DSLADLPQALK 177 (181)
T ss_pred HHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceee--cCHHHHHHHHH
Confidence 1234444444567899999999999999999964 233 322221 12235 7776 55777766553
No 116
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=97.45 E-value=0.00067 Score=70.40 Aligned_cols=90 Identities=13% Similarity=0.085 Sum_probs=70.8
Q ss_pred CCChhHHHHHH-HHHHCCCeEEEEcCCCHHHHHHHHHHcCC---ceEEE-e-------------cCcccHHHHHHHH-hH
Q 001981 791 PVKPEAQIVVS-SLRSMEISSIMVTGDNWATANAIAKEVGI---GKVFA-E-------------TDPVGKANKIKEL-QL 851 (986)
Q Consensus 791 ~~~~~~~~~i~-~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi---~~~~~-~-------------~~p~~K~~~v~~l-~~ 851 (986)
.++|++.+.|+ .++++|++++++|+.+...++.+++..++ +++.+ + +..++|...++.. ..
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~~~~ 173 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLEQKIGS 173 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHHHHhCC
Confidence 46899999995 88999999999999999999999988544 43332 1 2335787766654 32
Q ss_pred cCCEEEEEcCCcccHHHHHhCCceEEecC
Q 001981 852 KGMTVAMVGDGINDSPALVAADVGMAIGA 880 (986)
Q Consensus 852 ~g~~v~~vGDg~nD~~al~~A~vgia~~~ 880 (986)
......+-||+.||.|||+.||.+++++.
T Consensus 174 ~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp 202 (210)
T TIGR01545 174 PLKLYSGYSDSKQDNPLLAFCEHRWRVSK 202 (210)
T ss_pred ChhheEEecCCcccHHHHHhCCCcEEECc
Confidence 33456799999999999999999999963
No 117
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.42 E-value=0.00065 Score=54.81 Aligned_cols=63 Identities=17% Similarity=0.313 Sum_probs=56.6
Q ss_pred eeeeecCCCCchhHHHHHHhhcCCCCeEEEEEecCCCEEEEEeCCCCCChHHHHHHHHHhcCC
Q 001981 201 VHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEEASHG 263 (986)
Q Consensus 201 ~~~~v~Gm~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g~~ 263 (986)
..+.+.|++|.+|+..+++.++..+++....+++....+.+.|++.......+...++..||+
T Consensus 4 ~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 66 (68)
T TIGR00003 4 FTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYE 66 (68)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 468999999999999999999999999999999999999999998766777887778888775
No 118
>PRK11587 putative phosphatase; Provisional
Probab=97.41 E-value=0.00075 Score=70.79 Aligned_cols=103 Identities=21% Similarity=0.232 Sum_probs=72.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce---EEEe-c----Ccc--cHHHHHHHHhHcCCEEEEEc
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGK---VFAE-T----DPV--GKANKIKELQLKGMTVAMVG 860 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~---~~~~-~----~p~--~K~~~v~~l~~~g~~v~~vG 860 (986)
++.|++.++++.|+++|++++++|+.+...+....+..|+.. +.+. - .|+ --....+.+.-..+.++|||
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~ig 162 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVVE 162 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEEEe
Confidence 578999999999999999999999988877777778888742 2211 1 121 11223344444467899999
Q ss_pred CCcccHHHHHhCCce-EEecCCc-HHHHHhcCEEE
Q 001981 861 DGINDSPALVAADVG-MAIGAGT-DVAIEAADIVL 893 (986)
Q Consensus 861 Dg~nD~~al~~A~vg-ia~~~~~-~~~~~~ad~vl 893 (986)
|+.+|+.+.++|++. |++..+. ......+|+++
T Consensus 163 Ds~~di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~ 197 (218)
T PRK11587 163 DAPAGVLSGLAAGCHVIAVNAPADTPRLDEVDLVL 197 (218)
T ss_pred cchhhhHHHHHCCCEEEEECCCCchhhhccCCEEe
Confidence 999999999999974 5554332 22234577776
No 119
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.41 E-value=0.0004 Score=75.91 Aligned_cols=109 Identities=20% Similarity=0.221 Sum_probs=73.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc------eEE-EecCcccH--H----HHHHHHhHcCCEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG------KVF-AETDPVGK--A----NKIKELQLKGMTVA 857 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~------~~~-~~~~p~~K--~----~~v~~l~~~g~~v~ 857 (986)
++.|++.+.++.|++.|+++.++|+.+......+.+.++.. .++ +...+..| . .+++.+....+.++
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 223 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSRCV 223 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHHEE
Confidence 57899999999999999999999999998888877766321 122 11111122 2 24444444457799
Q ss_pred EEcCCcccHHHHHhCCceE-Ee--cCCcHHHHHhcCEEEeCCChhHH
Q 001981 858 MVGDGINDSPALVAADVGM-AI--GAGTDVAIEAADIVLIKSSLEDV 901 (986)
Q Consensus 858 ~vGDg~nD~~al~~A~vgi-a~--~~~~~~~~~~ad~vl~~~~~~~l 901 (986)
||||+.+|+.|.++|++.. ++ |.........+|+++ +++..+
T Consensus 224 ~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi--~~~~~l 268 (286)
T PLN02779 224 VVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVF--DCLGDV 268 (286)
T ss_pred EEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEE--CChhhc
Confidence 9999999999999999653 33 322222224688887 444443
No 120
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.40 E-value=0.0005 Score=70.93 Aligned_cols=85 Identities=14% Similarity=0.188 Sum_probs=67.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec---------CcccH--HHHHHHHhHcCCEEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET---------DPVGK--ANKIKELQLKGMTVAMV 859 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~---------~p~~K--~~~v~~l~~~g~~v~~v 859 (986)
++.|++.+++++|+++|++++++|+.+........+.+|+..+|..+ .|... ..+.+.+.-..+.++||
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~v 171 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFV 171 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEE
Confidence 57899999999999999999999999999999999999996544322 12211 23444444456779999
Q ss_pred cCCcccHHHHHhCCce
Q 001981 860 GDGINDSPALVAADVG 875 (986)
Q Consensus 860 GDg~nD~~al~~A~vg 875 (986)
||+.+|+.+.+++++-
T Consensus 172 gD~~~Di~~A~~~G~~ 187 (198)
T TIGR01428 172 ASNPWDLGGAKKFGFK 187 (198)
T ss_pred eCCHHHHHHHHHCCCc
Confidence 9999999999999975
No 121
>PLN02940 riboflavin kinase
Probab=97.40 E-value=0.00033 Score=79.68 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=72.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH-HcCCceEEEec---------Ccc--cHHHHHHHHhHcCCEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAK-EVGIGKVFAET---------DPV--GKANKIKELQLKGMTVAM 858 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~-~~gi~~~~~~~---------~p~--~K~~~v~~l~~~g~~v~~ 858 (986)
++.|++.+.++.|+++|+++.++|+.....+....+ ..|+...|..+ .|. -=..+++.+....+.++|
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l~ 172 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLV 172 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 568999999999999999999999999888887776 67885433222 121 112344444445678999
Q ss_pred EcCCcccHHHHHhCCce-EEecC--CcHHHHHhcCEEE
Q 001981 859 VGDGINDSPALVAADVG-MAIGA--GTDVAIEAADIVL 893 (986)
Q Consensus 859 vGDg~nD~~al~~A~vg-ia~~~--~~~~~~~~ad~vl 893 (986)
|||+.+|+.+.++|++. |.+.. ........+|.++
T Consensus 173 VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i 210 (382)
T PLN02940 173 IEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVI 210 (382)
T ss_pred EeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEe
Confidence 99999999999999965 33432 2232333566665
No 122
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.37 E-value=0.00042 Score=73.00 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=77.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec---------CcccH--HHHHHHH-hHcCCEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET---------DPVGK--ANKIKEL-QLKGMTVAM 858 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~---------~p~~K--~~~v~~l-~~~g~~v~~ 858 (986)
++.|++.+++++|++. ++++++|+..........+++|+..+|..+ .|+.. ...++.+ .-..+.++|
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~ 175 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLM 175 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEE
Confidence 5689999999999999 999999999999999999999996544332 12211 2334444 334467999
Q ss_pred EcCCc-ccHHHHHhCCce-EEe--cCCcHHHHHhcCEEEeCCChhHHHHH
Q 001981 859 VGDGI-NDSPALVAADVG-MAI--GAGTDVAIEAADIVLIKSSLEDVVTA 904 (986)
Q Consensus 859 vGDg~-nD~~al~~A~vg-ia~--~~~~~~~~~~ad~vl~~~~~~~l~~~ 904 (986)
|||+. +|+.+.+.+++. |.+ +...+.....+++++ +++..+..+
T Consensus 176 igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~--~~~~el~~~ 223 (224)
T TIGR02254 176 IGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEI--RSLEELYEI 223 (224)
T ss_pred ECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEE--CCHHHHHhh
Confidence 99998 899999999963 333 322222223466666 557666654
No 123
>PRK09449 dUMP phosphatase; Provisional
Probab=97.36 E-value=0.00056 Score=72.09 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=76.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec-----C--cccHHH----HHHHHhHc-CCEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET-----D--PVGKAN----KIKELQLK-GMTVAM 858 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~-----~--p~~K~~----~v~~l~~~-g~~v~~ 858 (986)
++.|++.++++.|+ .|+++.++|+.....+....+++|+..+|..+ . ++.+.+ +++.+.-. .+.++|
T Consensus 95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~~ 173 (224)
T PRK09449 95 TPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSRVLM 173 (224)
T ss_pred ccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 46899999999999 68999999999999999999999985433221 1 122223 33333322 257999
Q ss_pred EcCCc-ccHHHHHhCCce-EEec-CCcH-HHHHhcCEEEeCCChhHHHHHH
Q 001981 859 VGDGI-NDSPALVAADVG-MAIG-AGTD-VAIEAADIVLIKSSLEDVVTAI 905 (986)
Q Consensus 859 vGDg~-nD~~al~~A~vg-ia~~-~~~~-~~~~~ad~vl~~~~~~~l~~~i 905 (986)
|||+. +|+.+.++|++- |.+. .+.. .....+|+++ +++..+..++
T Consensus 174 vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i--~~~~el~~~l 222 (224)
T PRK09449 174 VGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQV--SSLSELEQLL 222 (224)
T ss_pred EcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEE--CCHHHHHHHH
Confidence 99998 799999999975 4443 2211 1112467766 5577776654
No 124
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.34 E-value=0.0005 Score=76.08 Aligned_cols=88 Identities=16% Similarity=0.063 Sum_probs=69.9
Q ss_pred ecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-EEEec------------------CcccHHHHHHH
Q 001981 788 VTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGK-VFAET------------------DPVGKANKIKE 848 (986)
Q Consensus 788 ~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~-~~~~~------------------~p~~K~~~v~~ 848 (986)
..+++.+++.+++++|+++|++++++||++...++.+.+.+|+.. +|..+ .|+-+...++.
T Consensus 184 ~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~ 263 (300)
T PHA02530 184 KEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWE 263 (300)
T ss_pred ccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999875 33111 12233445554
Q ss_pred HhH-cCCEEEEEcCCcccHHHHHhCCce
Q 001981 849 LQL-KGMTVAMVGDGINDSPALVAADVG 875 (986)
Q Consensus 849 l~~-~g~~v~~vGDg~nD~~al~~A~vg 875 (986)
+.. ..+.++||||..+|+.+.+.|++.
T Consensus 264 ~~~~~~~~~~~vgD~~~d~~~a~~~Gi~ 291 (300)
T PHA02530 264 KIAPKYDVLLAVDDRDQVVDMWRRIGLE 291 (300)
T ss_pred HhccCceEEEEEcCcHHHHHHHHHhCCe
Confidence 433 347799999999999999999966
No 125
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.33 E-value=0.00055 Score=67.97 Aligned_cols=116 Identities=21% Similarity=0.372 Sum_probs=87.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC----------------------------------------
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI---------------------------------------- 830 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi---------------------------------------- 830 (986)
.+-|++.++++.|++. +..+++|-.-.+-++++|+.+|+
T Consensus 83 ~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~Prg~~~~Te~~lD~~~~PeeeR~E~L~~~~~~~~~~geel 161 (315)
T COG4030 83 KLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVPRGELHGTEVDLDSIAVPEEEREELLSIIDVIASLSGEEL 161 (315)
T ss_pred ccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCCCccccccccccCccccCChHHHHHHHHhcCccccccHHHH
Confidence 4679999999999875 55667777788889999999999
Q ss_pred ----ceEEEecCcccHHHHHHHHhHc------------------CCEEEEEcCCcccHHHHHhCC-ce-EEec-CCcHHH
Q 001981 831 ----GKVFAETDPVGKANKIKELQLK------------------GMTVAMVGDGINDSPALVAAD-VG-MAIG-AGTDVA 885 (986)
Q Consensus 831 ----~~~~~~~~p~~K~~~v~~l~~~------------------g~~v~~vGDg~nD~~al~~A~-vg-ia~~-~~~~~~ 885 (986)
|++|+++.|-+-.+++...+.- ....++|||++.|..||+.+. -| +|+. ||.+-+
T Consensus 162 fe~lDe~F~rLip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d~sa~~VGDSItDv~ml~~~rgrGglAvaFNGNeYa 241 (315)
T COG4030 162 FEKLDELFSRLIPSEVGKIVESVKAVGGGEKAKIMEGYCELEGIDFSAVVVGDSITDVKMLEAARGRGGLAVAFNGNEYA 241 (315)
T ss_pred HHHHHHHHhhcCHHHHHHHHHhhhhccCcchhHHHHHHHhhcCCCcceeEecCcccchHHHHHhhccCceEEEecCCccc
Confidence 2456666665444444443322 234799999999999999886 22 5554 677778
Q ss_pred HHhcCEEEeCCChhHHHHHHHH
Q 001981 886 IEAADIVLIKSSLEDVVTAIDL 907 (986)
Q Consensus 886 ~~~ad~vl~~~~~~~l~~~i~~ 907 (986)
...||+.+.+.+...+..+|++
T Consensus 242 l~eAdVAvisp~~~a~~pviel 263 (315)
T COG4030 242 LKEADVAVISPTAMAEAPVIEL 263 (315)
T ss_pred ccccceEEeccchhhhhHHHHH
Confidence 8899999999999998888875
No 126
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.30 E-value=0.00073 Score=67.35 Aligned_cols=93 Identities=12% Similarity=0.082 Sum_probs=70.3
Q ss_pred EEecCCCChhHHHHHHHHHHCCCeEEEEcCC-CHHHHHHHHHHcCCc---------eEEEec----Cc-ccH--HHHHHH
Q 001981 786 FAVTDPVKPEAQIVVSSLRSMEISSIMVTGD-NWATANAIAKEVGIG---------KVFAET----DP-VGK--ANKIKE 848 (986)
Q Consensus 786 i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd-~~~~a~~~a~~~gi~---------~~~~~~----~p-~~K--~~~v~~ 848 (986)
..-+-++.|++.++++.|+++|+++.++|+. ....++.+.+.+|+. .+|..+ .+ ..| ..+.+.
T Consensus 40 ~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~ 119 (174)
T TIGR01685 40 SGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQK 119 (174)
T ss_pred CCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHH
Confidence 3334467899999999999999999999987 889999999999987 544332 22 122 234555
Q ss_pred HhHc------CCEEEEEcCCcccHHHHHhCCceEEe
Q 001981 849 LQLK------GMTVAMVGDGINDSPALVAADVGMAI 878 (986)
Q Consensus 849 l~~~------g~~v~~vGDg~nD~~al~~A~vgia~ 878 (986)
+.+. .+.++||||+..|+.+.++|++-...
T Consensus 120 ~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~ 155 (174)
T TIGR01685 120 VNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCY 155 (174)
T ss_pred hhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEE
Confidence 5432 46799999999999999999976443
No 127
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.29 E-value=0.087 Score=65.46 Aligned_cols=65 Identities=29% Similarity=0.511 Sum_probs=57.4
Q ss_pred eEEEEeecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCCcc
Q 001981 124 AVCRLRIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAGFGAD 190 (986)
Q Consensus 124 ~~~~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 190 (986)
.+..+.++||+|++|+..+++.+.+.+||.++.+++.+++..+.|++.. . +++.+.+++.||++.
T Consensus 53 ~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~-~-~~I~~aI~~~Gy~a~ 117 (741)
T PRK11033 53 TRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI-R-AQVESAVQKAGFSLR 117 (741)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc-h-HHHHHHHHhcccccc
Confidence 4567889999999999999999999999999999999999999998763 3 677788888999765
No 128
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.27 E-value=0.0011 Score=66.89 Aligned_cols=129 Identities=23% Similarity=0.227 Sum_probs=77.7
Q ss_pred cEEEEEECCEEEEEEEe-----cCCCChhHHHHHHHHHHCCCeEEEEcCCCH---------------HHHHHHHHHcCCc
Q 001981 772 TCVLVAIDGRVAGAFAV-----TDPVKPEAQIVVSSLRSMEISSIMVTGDNW---------------ATANAIAKEVGIG 831 (986)
Q Consensus 772 ~~i~va~~~~~~G~i~~-----~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~---------------~~a~~~a~~~gi~ 831 (986)
+.+++-+||+++.--.. .-++.|++.++|++|+++|++++++|+.+. .....+.++.|+.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD 81 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 35666777777621010 113478999999999999999999998774 2223445555543
Q ss_pred --eEEEe-cC-------------cccHHHH----HHHHhHcCCEEEEEcCCcccHHHHHhCCce--EEecCCcH---HHH
Q 001981 832 --KVFAE-TD-------------PVGKANK----IKELQLKGMTVAMVGDGINDSPALVAADVG--MAIGAGTD---VAI 886 (986)
Q Consensus 832 --~~~~~-~~-------------p~~K~~~----v~~l~~~g~~v~~vGDg~nD~~al~~A~vg--ia~~~~~~---~~~ 886 (986)
.++.. .. ...+.++ .+.+.-..+.++||||..+|+.+.++|++. |.+..+.. ...
T Consensus 82 ~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~ 161 (176)
T TIGR00213 82 LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAE 161 (176)
T ss_pred ccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCccccccc
Confidence 43321 00 1122333 333333457799999999999999999974 33333321 122
Q ss_pred HhcCEEEeCCChhHHH
Q 001981 887 EAADIVLIKSSLEDVV 902 (986)
Q Consensus 887 ~~ad~vl~~~~~~~l~ 902 (986)
..+|+++ +++..|+
T Consensus 162 ~~ad~~i--~~~~el~ 175 (176)
T TIGR00213 162 NIADWVL--NSLADLP 175 (176)
T ss_pred ccCCEEe--ccHHHhh
Confidence 3478887 4455543
No 129
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.24 E-value=0.00049 Score=70.04 Aligned_cols=83 Identities=14% Similarity=0.156 Sum_probs=61.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec-------CcccHHHH----HHHHhHcCCEEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET-------DPVGKANK----IKELQLKGMTVAMV 859 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~-------~p~~K~~~----v~~l~~~g~~v~~v 859 (986)
++.|++.++|+.|+++|+++.++|+... +....+.+|+...|..+ .+..+.++ ++.+.-..+.++||
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~v 164 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIGI 164 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEEE
Confidence 6789999999999999999999997543 45678899986554332 12223333 33333334569999
Q ss_pred cCCcccHHHHHhCCce
Q 001981 860 GDGINDSPALVAADVG 875 (986)
Q Consensus 860 GDg~nD~~al~~A~vg 875 (986)
||+.+|+.+.+.|++-
T Consensus 165 gD~~~di~aA~~aG~~ 180 (185)
T TIGR01990 165 EDAQAGIEAIKAAGMF 180 (185)
T ss_pred ecCHHHHHHHHHcCCE
Confidence 9999999999999975
No 130
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.22 E-value=0.0022 Score=51.53 Aligned_cols=66 Identities=24% Similarity=0.425 Sum_probs=56.0
Q ss_pred eEEEEEecCCCChhHHHHHHHHHhCCCCceEEEeeccCceEEEEeCCCCCCHHHHHHHHHHcCCCC
Q 001981 50 RTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAGFPV 115 (986)
Q Consensus 50 ~~~~~~v~gm~C~~C~~~I~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~G~~~ 115 (986)
++..+.+.|++|..|+..+++.+.+.+++....+++..++..+.+++.......+...+...||.+
T Consensus 2 ~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 2 QKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred cEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 456799999999999999999999999999999999999999998765556677766677888754
No 131
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.0014 Score=63.96 Aligned_cols=63 Identities=21% Similarity=0.425 Sum_probs=54.8
Q ss_pred eeEEEEEecCCCChhHHHHHHHHHhCCCCceEEEeeccCceEEEEeCCCCCCHHHHHHHHHHcCCCC
Q 001981 49 LRTVKFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAGFPV 115 (986)
Q Consensus 49 ~~~~~~~v~gm~C~~C~~~I~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~G~~~ 115 (986)
..+.+|.|. |+|.+|++.+++.|+.++||+++++++..+.+.+.. ...+.++.+.++..|-++
T Consensus 6 ~~~~efaV~-M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~t---s~p~s~i~~~le~tGr~A 68 (247)
T KOG4656|consen 6 TYEAEFAVQ-MTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVET---SVPPSEIQNTLENTGRDA 68 (247)
T ss_pred ceeEEEEEe-chhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEc---cCChHHHHHHHHhhChhe
Confidence 346778885 999999999999999999999999999999988874 356789999999999654
No 132
>PLN02580 trehalose-phosphatase
Probab=97.17 E-value=0.0042 Score=69.42 Aligned_cols=138 Identities=14% Similarity=0.215 Sum_probs=94.2
Q ss_pred HHHHhccCcEEEEEECCEEEEEEEecC--CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-------------
Q 001981 764 MKNEQLARTCVLVAIDGRVAGAFAVTD--PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEV------------- 828 (986)
Q Consensus 764 ~~~~~~g~~~i~va~~~~~~G~i~~~d--~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~------------- 828 (986)
..+.+..+.++++-+||++.-+..--| .+.++.++++++|.+. ..++++||++.....++..-.
T Consensus 112 ~~~~~~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l~~~~l~laGsHG~e~~ 190 (384)
T PLN02580 112 ANFAKGKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELVGLTELYYAGSHGMDIM 190 (384)
T ss_pred HHHhhcCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHhCCCCccEEEeCCceee
Confidence 345555667888899999987663222 2468999999999888 479999999866655443211
Q ss_pred -----------------------------------------------------CC-------------------------
Q 001981 829 -----------------------------------------------------GI------------------------- 830 (986)
Q Consensus 829 -----------------------------------------------------gi------------------------- 830 (986)
|.
T Consensus 191 ~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~~~~i~~v~~~l~e~~~~~pGs~VE~K~~svavHYR~a~~~~~~~~~ 270 (384)
T PLN02580 191 GPVRESVSNDHPNCIKSTDQQGKEVNLFQPASEFLPMIDEVFRSLVESTKDIKGAKVENHKFCVSVHYRNVDEKNWPLVA 270 (384)
T ss_pred cCCCCcccccccccccccccccccccccccchhhhhhHHHHHHHHHHHhccCCCCEEEecCcEEEEEeCCCCchHHHHHH
Confidence 11
Q ss_pred ----------c-------eEEEecCcc---cHHHHHHHHhHc-C---C---EEEEEcCCcccHHHHHh-----CCceEEe
Q 001981 831 ----------G-------KVFAETDPV---GKANKIKELQLK-G---M---TVAMVGDGINDSPALVA-----ADVGMAI 878 (986)
Q Consensus 831 ----------~-------~~~~~~~p~---~K~~~v~~l~~~-g---~---~v~~vGDg~nD~~al~~-----A~vgia~ 878 (986)
. .-..++.|. +|...++.+.+. | . .++++||+.||..||+. +++||+|
T Consensus 271 ~~l~~~l~~~~~l~v~~Gk~vlEVrP~~g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~I~V 350 (384)
T PLN02580 271 QCVHDVLKKYPRLRLTHGRKVLEVRPVIDWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYGILV 350 (384)
T ss_pred HHHHHHHHhCCceEEEeCCeEEEEecCCCCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCceEEEE
Confidence 0 112233443 777777776553 2 1 25899999999999996 6899999
Q ss_pred cCCcHHHHHhcCEEEeCCChhHHHHHHH
Q 001981 879 GAGTDVAIEAADIVLIKSSLEDVVTAID 906 (986)
Q Consensus 879 ~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 906 (986)
|++.+.. .|++.+ ++...+..+++
T Consensus 351 gn~~~~t--~A~y~L--~dp~eV~~~L~ 374 (384)
T PLN02580 351 SSVPKES--NAFYSL--RDPSEVMEFLK 374 (384)
T ss_pred ecCCCCc--cceEEc--CCHHHHHHHHH
Confidence 9765433 577777 56777776664
No 133
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.0012 Score=64.34 Aligned_cols=63 Identities=21% Similarity=0.375 Sum_probs=55.4
Q ss_pred eEEEEeecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCCcc
Q 001981 124 AVCRLRIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAGFGAD 190 (986)
Q Consensus 124 ~~~~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 190 (986)
.+.+|.|+ |+|.+|+..+++.|+.++||.++.+++..+.+.|. ....+.++.+.++..|-++.
T Consensus 7 ~~~efaV~-M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~---ts~p~s~i~~~le~tGr~Av 69 (247)
T KOG4656|consen 7 YEAEFAVQ-MTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVE---TSVPPSEIQNTLENTGRDAV 69 (247)
T ss_pred eeEEEEEe-chhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEE---ccCChHHHHHHHHhhChheE
Confidence 45667765 99999999999999999999999999999999998 45678899999999997654
No 134
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.10 E-value=0.00072 Score=68.81 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=62.9
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec-------CcccHHHH----HHHHhHcCCEEEE
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET-------DPVGKANK----IKELQLKGMTVAM 858 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~-------~p~~K~~~----v~~l~~~g~~v~~ 858 (986)
-++.|++.++++.|+++|+++.++|+. ..++.+.+.+|++.+|..+ .+..+.++ .+.+....+.++|
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~ 164 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECVV 164 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeEE
Confidence 468999999999999999999999987 6678888999986544322 11122233 3333333467999
Q ss_pred EcCCcccHHHHHhCCce
Q 001981 859 VGDGINDSPALVAADVG 875 (986)
Q Consensus 859 vGDg~nD~~al~~A~vg 875 (986)
|||+.+|+.+.++|++.
T Consensus 165 IgD~~~di~aA~~~G~~ 181 (185)
T TIGR02009 165 FEDALAGVQAARAAGMF 181 (185)
T ss_pred EeCcHhhHHHHHHCCCe
Confidence 99999999999999875
No 135
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.09 E-value=0.0034 Score=62.53 Aligned_cols=105 Identities=12% Similarity=0.105 Sum_probs=71.1
Q ss_pred cEEEEEECCEEEEEEE----ecCC-----CChhHHHHHHHHHHCCCeEEEEcCCCHH------------HHHHHHHHcCC
Q 001981 772 TCVLVAIDGRVAGAFA----VTDP-----VKPEAQIVVSSLRSMEISSIMVTGDNWA------------TANAIAKEVGI 830 (986)
Q Consensus 772 ~~i~va~~~~~~G~i~----~~d~-----~~~~~~~~i~~l~~~gi~~~~~Tgd~~~------------~a~~~a~~~gi 830 (986)
+.+++-+|++++-... ..++ +.|++.+++++|+++|+++.++|+.+.. .+..+.+++|+
T Consensus 14 k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl 93 (166)
T TIGR01664 14 KVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKV 93 (166)
T ss_pred cEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCC
Confidence 5677788888875321 1122 4599999999999999999999986652 46778899998
Q ss_pred ceEEE---ec--CcccHHHH----HHHHh--HcCCEEEEEcCCc--------ccHHHHHhCCceE
Q 001981 831 GKVFA---ET--DPVGKANK----IKELQ--LKGMTVAMVGDGI--------NDSPALVAADVGM 876 (986)
Q Consensus 831 ~~~~~---~~--~p~~K~~~----v~~l~--~~g~~v~~vGDg~--------nD~~al~~A~vgi 876 (986)
...+. .- .+..+.+. ++.+. -..+.++||||.. +|..+.++|++-.
T Consensus 94 ~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~ 158 (166)
T TIGR01664 94 PIQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEF 158 (166)
T ss_pred CEEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCc
Confidence 64221 10 11122223 33333 2336799999986 6999999998753
No 136
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.07 E-value=0.0014 Score=66.52 Aligned_cols=84 Identities=21% Similarity=0.239 Sum_probs=62.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEe-----cCcccH------HHHHHHHhHcCCEEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAE-----TDPVGK------ANKIKELQLKGMTVAMV 859 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~-----~~p~~K------~~~v~~l~~~g~~v~~v 859 (986)
++.|++.+.++.|+++|++++++|+..... ..+.+++|+...|.. -....| ..+.+.+....+.++||
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~v 163 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFV 163 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEE
Confidence 578999999999999999999999988877 666666898543322 111122 23334444446789999
Q ss_pred cCCcccHHHHHhCCce
Q 001981 860 GDGINDSPALVAADVG 875 (986)
Q Consensus 860 GDg~nD~~al~~A~vg 875 (986)
||...|+.+.+++++-
T Consensus 164 gD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 164 DDSPAGIEAAKAAGMH 179 (183)
T ss_pred cCCHHHHHHHHHcCCE
Confidence 9999999999999873
No 137
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.06 E-value=0.0018 Score=63.29 Aligned_cols=85 Identities=21% Similarity=0.266 Sum_probs=62.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCH---------------HHHHHHHHHcCCce--EEEe-c-------CcccHHHH
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNW---------------ATANAIAKEVGIGK--VFAE-T-------DPVGKANK 845 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~---------------~~a~~~a~~~gi~~--~~~~-~-------~p~~K~~~ 845 (986)
++.|++.++++.|+++|+++.++|+.+. .....+.+.+|+.. .|.. . ....+.++
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~ 106 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGL 106 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 4689999999999999999999998763 55677888999862 2321 1 11233443
Q ss_pred HHH----HhHcCCEEEEEcCCcccHHHHHhCCce
Q 001981 846 IKE----LQLKGMTVAMVGDGINDSPALVAADVG 875 (986)
Q Consensus 846 v~~----l~~~g~~v~~vGDg~nD~~al~~A~vg 875 (986)
++. +....+.++||||...|+.+.+.+++-
T Consensus 107 ~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~ 140 (147)
T TIGR01656 107 ILEALKRLGVDASRSLVVGDRLRDLQAARNAGLA 140 (147)
T ss_pred HHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCC
Confidence 333 333346799999999999999999975
No 138
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.06 E-value=0.00061 Score=68.31 Aligned_cols=87 Identities=14% Similarity=0.240 Sum_probs=68.2
Q ss_pred cCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce----EEEec-Cc--ccH----HHHHHHHhHcCCEEE
Q 001981 789 TDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGK----VFAET-DP--VGK----ANKIKELQLKGMTVA 857 (986)
Q Consensus 789 ~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~----~~~~~-~p--~~K----~~~v~~l~~~g~~v~ 857 (986)
..++.+++.++++.|+++|++++++|+.+........+++|+.. +++.- .+ +.+ ..+++.+.-..+.++
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~ 154 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEIL 154 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEE
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEE
Confidence 34578999999999999999999999999999999999999863 33221 11 111 234555555567899
Q ss_pred EEcCCcccHHHHHhCCce
Q 001981 858 MVGDGINDSPALVAADVG 875 (986)
Q Consensus 858 ~vGDg~nD~~al~~A~vg 875 (986)
||||+..|+.+.+.|++.
T Consensus 155 ~vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 155 FVGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp EEESSHHHHHHHHHTTSE
T ss_pred EEeCCHHHHHHHHHcCCe
Confidence 999999999999999965
No 139
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.0023 Score=61.84 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=72.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC----CceEE--E------------------ecCcccHHHHH
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVG----IGKVF--A------------------ETDPVGKANKI 846 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~g----i~~~~--~------------------~~~p~~K~~~v 846 (986)
.++|+.++.++.+++++++++++|+........+-++++ |..+. + ..--.+|...|
T Consensus 73 ~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~vI 152 (220)
T COG4359 73 KIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSSVI 152 (220)
T ss_pred ccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcchhH
Confidence 479999999999999999999999998888888888877 42110 0 01124899999
Q ss_pred HHHhHcCCEEEEEcCCcccHHHHHhCCceEEe
Q 001981 847 KELQLKGMTVAMVGDGINDSPALVAADVGMAI 878 (986)
Q Consensus 847 ~~l~~~g~~v~~vGDg~nD~~al~~A~vgia~ 878 (986)
+.+++..+.+.|+|||..|++|.+.+|+=.|-
T Consensus 153 ~~l~e~~e~~fy~GDsvsDlsaaklsDllFAK 184 (220)
T COG4359 153 HELSEPNESIFYCGDSVSDLSAAKLSDLLFAK 184 (220)
T ss_pred HHhhcCCceEEEecCCcccccHhhhhhhHhhH
Confidence 99999999999999999999998888875443
No 140
>PLN02811 hydrolase
Probab=96.99 E-value=0.0022 Score=67.35 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=58.3
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHH-HHHHHcCCc----eEEEec---CcccH------HHHHHHHh---Hc
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATAN-AIAKEVGIG----KVFAET---DPVGK------ANKIKELQ---LK 852 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~-~~a~~~gi~----~~~~~~---~p~~K------~~~v~~l~---~~ 852 (986)
-++.|++.++|+.|+++|+++.++||....... ...+..++. .+++.- ....| ...++.+. -.
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 156 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVD 156 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCC
Confidence 357899999999999999999999998765433 333333443 222222 01112 23344443 23
Q ss_pred CCEEEEEcCCcccHHHHHhCCce
Q 001981 853 GMTVAMVGDGINDSPALVAADVG 875 (986)
Q Consensus 853 g~~v~~vGDg~nD~~al~~A~vg 875 (986)
.+.++||||+..|+.|.++|++.
T Consensus 157 ~~~~v~IgDs~~di~aA~~aG~~ 179 (220)
T PLN02811 157 PGKVLVFEDAPSGVEAAKNAGMS 179 (220)
T ss_pred ccceEEEeccHhhHHHHHHCCCe
Confidence 46799999999999999999965
No 141
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.95 E-value=0.0016 Score=67.50 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=61.5
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec---------Cccc--HHHHHHHHhHcCCEEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET---------DPVG--KANKIKELQLKGMTVAMV 859 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~---------~p~~--K~~~v~~l~~~g~~v~~v 859 (986)
.+.|++.++++.|+++|++++++|+.... .....+.+|+...|..+ .|+. =..+++.+....+.++||
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~I 183 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHI 183 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEE
Confidence 57899999999999999999999987654 47788889985444222 1221 122333443345779999
Q ss_pred cCCc-ccHHHHHhCCce
Q 001981 860 GDGI-NDSPALVAADVG 875 (986)
Q Consensus 860 GDg~-nD~~al~~A~vg 875 (986)
||+. +|+.+.++|++-
T Consensus 184 gD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 184 GDSLRNDYQGARAAGWR 200 (203)
T ss_pred CCCchHHHHHHHHcCCe
Confidence 9997 899999998864
No 142
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.90 E-value=0.0026 Score=60.43 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=60.2
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCC-CHHHHHHHHHHcC-------CceEEEec-----CcccH--HHHHHHHh--HcC
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGD-NWATANAIAKEVG-------IGKVFAET-----DPVGK--ANKIKELQ--LKG 853 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd-~~~~a~~~a~~~g-------i~~~~~~~-----~p~~K--~~~v~~l~--~~g 853 (986)
++.+++.+.++.|+++|+++.++|+. ....+..+.+..+ +..+|... .|+.+ ..+++.+. -..
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~lg~~~~p 108 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGVLKP 108 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCCCcHHHHHHHHHHHhcCCCCc
Confidence 57999999999999999999999999 8888888888888 55444322 23222 23444444 445
Q ss_pred CEEEEEcCCcccHHHHHh
Q 001981 854 MTVAMVGDGINDSPALVA 871 (986)
Q Consensus 854 ~~v~~vGDg~nD~~al~~ 871 (986)
+.++||||...|...++.
T Consensus 109 ~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 109 KSILFVDDRPDNNEEVDY 126 (128)
T ss_pred ceEEEECCCHhHHHHHHh
Confidence 789999999999877653
No 143
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=96.85 E-value=0.0043 Score=66.21 Aligned_cols=62 Identities=24% Similarity=0.382 Sum_probs=43.8
Q ss_pred cHHHHHHHHhHc----CCEEEEEcCCcccHHHHHhC--------CceEEecCCcHHHHHhcCEEEeCCChhHHHHHHH
Q 001981 841 GKANKIKELQLK----GMTVAMVGDGINDSPALVAA--------DVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAID 906 (986)
Q Consensus 841 ~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A--------~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~ 906 (986)
+|...++.+.+. ...++|+||+.||.+|++.+ ..+|.++.+. .+..|++++ ++...+..+++
T Consensus 167 ~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g~--~~~~A~~~~--~~~~~v~~~L~ 240 (244)
T TIGR00685 167 NKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSGS--KKTVAKFHL--TGPQQVLEFLG 240 (244)
T ss_pred CHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecCC--cCCCceEeC--CCHHHHHHHHH
Confidence 566666555443 34799999999999999999 4788885332 345688887 45777666653
No 144
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=96.80 E-value=0.0038 Score=66.64 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=44.2
Q ss_pred ccHHHHHHHHhHc----CCEEEEEcCCcccHHHHHhCCceEEecCCcHH-----HHHh---cCEEE-eCCChhHHHHHHH
Q 001981 840 VGKANKIKELQLK----GMTVAMVGDGINDSPALVAADVGMAIGAGTDV-----AIEA---ADIVL-IKSSLEDVVTAID 906 (986)
Q Consensus 840 ~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vgia~~~~~~~-----~~~~---ad~vl-~~~~~~~l~~~i~ 906 (986)
..|...++.|+++ .+.|+++||+-||.+||..+.-||.+||+.+. .... ..+.. ..+.-.+|.+.++
T Consensus 164 a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL~~~~~~vvV~Na~~e~~~~~~~~~~~~~~iy~a~~~~a~GIlegl~ 243 (247)
T PF05116_consen 164 ASKGAALRYLMERWGIPPEQVLVAGDSGNDLEMLEGGDHGVVVGNAQPELLSWLLEKLRQQERIYFAQGPYAAGILEGLQ 243 (247)
T ss_dssp -SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHHCCSSEEEE-TTS-HHHHHHHHHCC-TTE--EE-SS-THHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHHcCcCCEEEEcCCCHHHHHHHHHhcccCCceEecCCCCcHHHHHHHH
Confidence 3687777777664 24688899999999999999999999998877 2211 12233 3455666666654
No 145
>PLN02957 copper, zinc superoxide dismutase
Probab=96.79 E-value=0.0036 Score=66.06 Aligned_cols=62 Identities=24% Similarity=0.296 Sum_probs=55.9
Q ss_pred cceeeeecCCCCchhHHHHHHhhcCCCCeEEEEEecCCCEEEEEeCCCCCChHHHHHHHHHhcCCC
Q 001981 199 NKVHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEEASHGP 264 (986)
Q Consensus 199 ~~~~~~v~Gm~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g~~~ 264 (986)
.++.|.+ +|+|.+|+..+++.|.+++||.++.+|+.++++.|+|+ ...+++.+.+++.||..
T Consensus 6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~Gy~a 67 (238)
T PLN02957 6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTGRKA 67 (238)
T ss_pred EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcCCcE
Confidence 3567888 79999999999999999999999999999999999983 46788999999999874
No 146
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=96.79 E-value=0.0043 Score=69.13 Aligned_cols=107 Identities=9% Similarity=0.135 Sum_probs=83.1
Q ss_pred cEEEEEECCEEEEEEEecC--------CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH----cCCceEEEe--c
Q 001981 772 TCVLVAIDGRVAGAFAVTD--------PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKE----VGIGKVFAE--T 837 (986)
Q Consensus 772 ~~i~va~~~~~~G~i~~~d--------~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~----~gi~~~~~~--~ 837 (986)
.++.+-.|+++-|-+.-+| ++.+++.++|+.|+++|+.+.++|..+...+..+.++ +|+.+.|.. .
T Consensus 4 k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~ 83 (320)
T TIGR01686 4 KVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSI 83 (320)
T ss_pred EEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEE
Confidence 4555666777766665555 4579999999999999999999999999999999999 998765554 3
Q ss_pred CcccHHHHHHHHhH----cCCEEEEEcCCcccHHHHHhCCceEEe
Q 001981 838 DPVGKANKIKELQL----KGMTVAMVGDGINDSPALVAADVGMAI 878 (986)
Q Consensus 838 ~p~~K~~~v~~l~~----~g~~v~~vGDg~nD~~al~~A~vgia~ 878 (986)
.++.|.+.++.+.+ ..+.++||||...|..+.+.+...+.+
T Consensus 84 ~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~~lp~~~~ 128 (320)
T TIGR01686 84 NWGPKSESLRKIAKKLNLGTDSFLFIDDNPAERANVKITLPVKTL 128 (320)
T ss_pred ecCchHHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHHHCCCCcc
Confidence 45566665544433 347899999999999999998876544
No 147
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=96.75 E-value=0.0071 Score=63.03 Aligned_cols=89 Identities=11% Similarity=0.115 Sum_probs=66.6
Q ss_pred ecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc---CC----ceEEEec-CcccH----HHHHHHHhHcCCE
Q 001981 788 VTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEV---GI----GKVFAET-DPVGK----ANKIKELQLKGMT 855 (986)
Q Consensus 788 ~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~---gi----~~~~~~~-~p~~K----~~~v~~l~~~g~~ 855 (986)
+.-++.+++.+++++|+++|+++.++|..+....+.+.+.. ++ +.+|... .++.+ ..+++.+....+.
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~lgv~p~e 171 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQLGSPPRE 171 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHHhCcChhH
Confidence 34578999999999999999999999999888877777765 33 3344322 11112 3455555555678
Q ss_pred EEEEcCCcccHHHHHhCCceE
Q 001981 856 VAMVGDGINDSPALVAADVGM 876 (986)
Q Consensus 856 v~~vGDg~nD~~al~~A~vgi 876 (986)
++||||...|+.|.++|++-.
T Consensus 172 ~lfVgDs~~Di~AA~~AG~~t 192 (220)
T TIGR01691 172 ILFLSDIINELDAARKAGLHT 192 (220)
T ss_pred EEEEeCCHHHHHHHHHcCCEE
Confidence 999999999999999999763
No 148
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.74 E-value=0.0038 Score=61.71 Aligned_cols=85 Identities=14% Similarity=0.095 Sum_probs=62.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCC---------------CHHHHHHHHHHcCCc--eEE-E-----ecC--cccHHHH
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGD---------------NWATANAIAKEVGIG--KVF-A-----ETD--PVGKANK 845 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd---------------~~~~a~~~a~~~gi~--~~~-~-----~~~--p~~K~~~ 845 (986)
++.|++.+++++|+++|++++++|.. .......+.+++|+. .++ + .-. ...|..+
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~~~~~~~~KP~~~~ 108 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPKIKL 108 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 45789999999999999999999985 355677888999986 222 2 111 1233444
Q ss_pred HHHHhH----cCCEEEEEcCCcccHHHHHhCCce
Q 001981 846 IKELQL----KGMTVAMVGDGINDSPALVAADVG 875 (986)
Q Consensus 846 v~~l~~----~g~~v~~vGDg~nD~~al~~A~vg 875 (986)
+..+.+ ..+.++||||+.+|..+.+++++.
T Consensus 109 ~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~ 142 (161)
T TIGR01261 109 LEPYLKKNLIDKARSYVIGDRETDMQLAENLGIR 142 (161)
T ss_pred HHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCe
Confidence 444332 235699999999999999999976
No 149
>PLN02957 copper, zinc superoxide dismutase
Probab=96.71 E-value=0.0062 Score=64.33 Aligned_cols=67 Identities=24% Similarity=0.425 Sum_probs=58.6
Q ss_pred eEEEEeecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCCcccccC
Q 001981 124 AVCRLRIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAGFGADLISS 194 (986)
Q Consensus 124 ~~~~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 194 (986)
.++.+.+ +|+|.+|+.++++.+.+++||..+.+++..+++.+.++ ...+.+.+.+++.||.+.+...
T Consensus 6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~Gy~a~~~~~ 72 (238)
T PLN02957 6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTGRKARLIGQ 72 (238)
T ss_pred EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcCCcEEEecC
Confidence 4567888 79999999999999999999999999999999999873 3678899999999999766544
No 150
>PLN03017 trehalose-phosphatase
Probab=96.71 E-value=0.024 Score=62.95 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=47.1
Q ss_pred HhccCcEEEEEECCEEEEEEEecC--CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Q 001981 767 EQLARTCVLVAIDGRVAGAFAVTD--PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAK 826 (986)
Q Consensus 767 ~~~g~~~i~va~~~~~~G~i~~~d--~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~ 826 (986)
....+..+++-+||+++-+..-.| .+.++..++|++|. +|+.++++||+.......+..
T Consensus 107 ~~~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~~ 167 (366)
T PLN03017 107 SRGKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFVK 167 (366)
T ss_pred hcCCCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhhc
Confidence 333456677789999997776444 48899999999999 789999999999888877643
No 151
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.69 E-value=0.0069 Score=67.39 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=71.4
Q ss_pred cEEEEEECCEEEEEEE--------ecCCCChhHHHHHHHHHHCCCeEEEEcCC---------------CHHHHHHHHHHc
Q 001981 772 TCVLVAIDGRVAGAFA--------VTDPVKPEAQIVVSSLRSMEISSIMVTGD---------------NWATANAIAKEV 828 (986)
Q Consensus 772 ~~i~va~~~~~~G~i~--------~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd---------------~~~~a~~~a~~~ 828 (986)
.++++-+|+++.--.. -.-++.|++.+++++|+++|++++++|+. .......+.+.+
T Consensus 3 k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~ 82 (354)
T PRK05446 3 KILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQ 82 (354)
T ss_pred cEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHc
Confidence 4556666665543211 12367899999999999999999999984 244567788888
Q ss_pred CCc--eEEEe------c--CcccHHHHHHHHhHc----CCEEEEEcCCcccHHHHHhCCce
Q 001981 829 GIG--KVFAE------T--DPVGKANKIKELQLK----GMTVAMVGDGINDSPALVAADVG 875 (986)
Q Consensus 829 gi~--~~~~~------~--~p~~K~~~v~~l~~~----g~~v~~vGDg~nD~~al~~A~vg 875 (986)
|+. .++.. - ....|..++..+.++ .+.++||||+.+|..+.+.|++-
T Consensus 83 gl~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~ 143 (354)
T PRK05446 83 GIKFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIK 143 (354)
T ss_pred CCceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCe
Confidence 874 22211 0 112344455544333 37899999999999999999976
No 152
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=96.68 E-value=0.0038 Score=61.35 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=59.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec------CcccHHHHH----HHHhHcCCEEEEEc
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET------DPVGKANKI----KELQLKGMTVAMVG 860 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~------~p~~K~~~v----~~l~~~g~~v~~vG 860 (986)
...+++.++++.|+++|+++.++|+.....+....+.. +...|..+ .++.+.+.+ +.+.... .++|||
T Consensus 64 ~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l~iG 141 (154)
T TIGR01549 64 AYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFGAKPEPEIFLAALESLGLPP-EVLHVG 141 (154)
T ss_pred eeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCCCCcCHHHHHHHHHHcCCCC-CEEEEe
Confidence 34589999999999999999999999999999888886 54333221 112233333 3333334 799999
Q ss_pred CCcccHHHHHhCC
Q 001981 861 DGINDSPALVAAD 873 (986)
Q Consensus 861 Dg~nD~~al~~A~ 873 (986)
|+.+|..+.++|+
T Consensus 142 Ds~~Di~aa~~aG 154 (154)
T TIGR01549 142 DNLNDIEGARNAG 154 (154)
T ss_pred CCHHHHHHHHHcc
Confidence 9999999988875
No 153
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.65 E-value=0.016 Score=72.17 Aligned_cols=69 Identities=10% Similarity=0.173 Sum_probs=54.9
Q ss_pred hHHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHH-HHCCCeEEEEcCCCHHHHHHHHHH
Q 001981 759 VDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSL-RSMEISSIMVTGDNWATANAIAKE 827 (986)
Q Consensus 759 ~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l-~~~gi~~~~~Tgd~~~~a~~~a~~ 827 (986)
.+.....+.....+.+++-+||+++-.-...-.+.++..+++++| ++.|..++++||+.......+...
T Consensus 584 ~~~i~~~y~~~~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~ 653 (854)
T PLN02205 584 MEHIVSAYKRTTTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSP 653 (854)
T ss_pred HHHHHHHHHhhcCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCC
Confidence 345566677777889999999999854433346778999999998 777999999999999998887754
No 154
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.61 E-value=0.014 Score=62.24 Aligned_cols=100 Identities=14% Similarity=0.088 Sum_probs=69.6
Q ss_pred CcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHH--HHHHHcCCce-EEEec-CcccH-HHH
Q 001981 771 RTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATAN--AIAKEVGIGK-VFAET-DPVGK-ANK 845 (986)
Q Consensus 771 ~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~--~~a~~~gi~~-~~~~~-~p~~K-~~~ 845 (986)
...+.+..|+.+ .-.+.+.|++.+++++|+++|+++.++|+....... ...+++|++. .+..+ ++.+- ...
T Consensus 8 ~~~~~~D~dG~l----~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~~~ 83 (242)
T TIGR01459 8 YDVFLLDLWGVI----IDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIAVQM 83 (242)
T ss_pred CCEEEEeccccc----ccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHHHHH
Confidence 445555555544 456778999999999999999999999987665554 6779999976 55553 33321 223
Q ss_pred HHHH-hH---cCCEEEEEcCCcccHHHHHhCCc
Q 001981 846 IKEL-QL---KGMTVAMVGDGINDSPALVAADV 874 (986)
Q Consensus 846 v~~l-~~---~g~~v~~vGDg~nD~~al~~A~v 874 (986)
+... ++ .+..++++||+.+|...+...+.
T Consensus 84 l~~~~~~~~~~~~~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 84 ILESKKRFDIRNGIIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred HHhhhhhccCCCceEEEeCCcccchhhhcCCCc
Confidence 3322 22 35679999999999988865543
No 155
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=96.41 E-value=0.0072 Score=63.50 Aligned_cols=61 Identities=25% Similarity=0.336 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCc----eEEEecCc--ccHHHHHHHHhH----cCCEEEEEcCCcccHHHHHhCCceEEe
Q 001981 818 WATANAIAKEVGIG----KVFAETDP--VGKANKIKELQL----KGMTVAMVGDGINDSPALVAADVGMAI 878 (986)
Q Consensus 818 ~~~a~~~a~~~gi~----~~~~~~~p--~~K~~~v~~l~~----~g~~v~~vGDg~nD~~al~~A~vgia~ 878 (986)
........++.|+. ..+.++.| ..|...++.+.+ ..+.|+++||+.||.+||+.|++|||+
T Consensus 150 ~~~~~~~l~~~~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 150 MPRFTALLADLGLAIVQGNRFSHVLGASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVI 220 (221)
T ss_pred HHHHHHHHHHcCCeEEecCCeeEEecCCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEe
Confidence 33344445555665 33445554 368777666644 356799999999999999999999986
No 156
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.032 Score=63.95 Aligned_cols=147 Identities=16% Similarity=0.300 Sum_probs=114.4
Q ss_pred CEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc----------------------------
Q 001981 780 GRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG---------------------------- 831 (986)
Q Consensus 780 ~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~---------------------------- 831 (986)
..+.|++.+..+.+++....|+.|-+.-++.+..|-.+....+-+|+++||+
T Consensus 815 QIf~GlVs~~Yea~ldiVriIdgL~naCiRfVYFS~EdELkSkVFAEKlGiEaGWNCHISLa~~~d~Pg~e~~pa~~q~a 894 (1354)
T KOG4383|consen 815 QIFCGLVSLHYEAILDIVRIIDGLDNACIRFVYFSKEDELKSKVFAEKLGIEAGWNCHISLAEEEDAPGREAGPAHEQFA 894 (1354)
T ss_pred chhhhhhhhhccchhhHHHHHHHhhhhheeeeeecchHHHHHHHHHHHhccccccceeEEeccCCCCCcccCCCCChhhh
Confidence 3578999999999999999999999999999999999999999999999991
Q ss_pred ---------------------------------------------------------------------------eEEEe
Q 001981 832 ---------------------------------------------------------------------------KVFAE 836 (986)
Q Consensus 832 ---------------------------------------------------------------------------~~~~~ 836 (986)
..|.+
T Consensus 895 ~qkpSlhddlnqia~ddaeg~lL~~Eeg~~dliSfq~~dsdi~kf~ed~N~AkLPrGihnVRPHL~~iDNVPLLV~LFTD 974 (1354)
T KOG4383|consen 895 AQKPSLHDDLNQIALDDAEGELLDCEEGARDLISFQKMDSDIAKFAEDPNIAKLPRGIHNVRPHLDEIDNVPLLVGLFTD 974 (1354)
T ss_pred ccCcchhHHHHHhhhcccccceeehhhcccCCccccccccchhhhcCCCchhhcCcchhhcCcccccccCcceeeeeccC
Confidence 35777
Q ss_pred cCcccHHHHHHHHhHcCCEEEEEcCCcccH--HHHHhCCceEEecC-------------CcHHHHH-hcC----------
Q 001981 837 TDPVGKANKIKELQLKGMTVAMVGDGINDS--PALVAADVGMAIGA-------------GTDVAIE-AAD---------- 890 (986)
Q Consensus 837 ~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~--~al~~A~vgia~~~-------------~~~~~~~-~ad---------- 890 (986)
.+|+.--+.|+-.|+.|+.++.+|...|-. --+-+||++|++.. ++...+. +.|
T Consensus 975 cnpeamcEMIeIMQE~GEVtcclGS~aN~rNSciflkadISialD~l~~~~C~~e~fg~assismaqandglsplQiSgq 1054 (1354)
T KOG4383|consen 975 CNPEAMCEMIEIMQENGEVTCCLGSCANARNSCIFLKADISIALDDLEEPACRLEDFGVASSISMAQANDGLSPLQISGQ 1054 (1354)
T ss_pred CCHHHHHHHHHHHHHcCcEEEEeccccccccceEEEccceeEEeccCCCccceecccccchhhhhhhhcCCCCceeeccc
Confidence 889999999999999999999999987743 34578999998842 1222221 222
Q ss_pred -------EEEeCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001981 891 -------IVLIKSSLEDVVTAIDLSRKTISRIRLNYVWALGYN 926 (986)
Q Consensus 891 -------~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~~~~~n 926 (986)
+-+....+-.+..+|+-+|....-+|+.+.|.+...
T Consensus 1055 LnaL~c~~~f~~ee~ikiirLIe~ARHa~~g~R~cfLFiLq~q 1097 (1354)
T KOG4383|consen 1055 LNALACDFRFDHEELIKIIRLIECARHAMSGFRHCFLFILQAQ 1097 (1354)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 111122244566778889999999999988866544
No 157
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=96.39 E-value=0.0037 Score=61.03 Aligned_cols=86 Identities=10% Similarity=0.008 Sum_probs=64.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-EEEec-----CcccHHHHH---HHHhHcCCEEEEEcC
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGK-VFAET-----DPVGKANKI---KELQLKGMTVAMVGD 861 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~-~~~~~-----~p~~K~~~v---~~l~~~g~~v~~vGD 861 (986)
.++|++.+.++.|+ .+++++++|+.+...++.+.+.+|+.. +|..+ ....|..+. +.+....+.++||||
T Consensus 45 ~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~D 123 (148)
T smart00577 45 KKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDD 123 (148)
T ss_pred EECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCeEeecHHHcCCChhcEEEEEC
Confidence 46999999999998 579999999999999999999999854 32321 112232233 444445678999999
Q ss_pred CcccHHHHHhCCceEE
Q 001981 862 GINDSPALVAADVGMA 877 (986)
Q Consensus 862 g~nD~~al~~A~vgia 877 (986)
..+|..+.+++++-|.
T Consensus 124 s~~~~~aa~~ngI~i~ 139 (148)
T smart00577 124 SPDSWPFHPENLIPIK 139 (148)
T ss_pred CHHHhhcCccCEEEec
Confidence 9999998877766554
No 158
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.31 E-value=0.011 Score=76.01 Aligned_cols=109 Identities=12% Similarity=0.161 Sum_probs=77.4
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc-eEEEec---------Ccc--cHHHHHHHHhHcCCEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG-KVFAET---------DPV--GKANKIKELQLKGMTVAM 858 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~-~~~~~~---------~p~--~K~~~v~~l~~~g~~v~~ 858 (986)
.+.|++.+.++.|+++|+++.++|+.....+....+++|+. ..|..+ .|+ -=...++.+....+.++|
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~ 240 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVV 240 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence 36799999999999999999999999999999999999985 322211 121 113344555545678999
Q ss_pred EcCCcccHHHHHhCCce-EEecC--C-cHHHHHhcCEEEeCCChhHH
Q 001981 859 VGDGINDSPALVAADVG-MAIGA--G-TDVAIEAADIVLIKSSLEDV 901 (986)
Q Consensus 859 vGDg~nD~~al~~A~vg-ia~~~--~-~~~~~~~ad~vl~~~~~~~l 901 (986)
|||..+|+.+.+.|++- |.+.. . .+.....+|+++ +++..+
T Consensus 241 IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi--~~l~el 285 (1057)
T PLN02919 241 IEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIR--KDIGNI 285 (1057)
T ss_pred EcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEE--CChHHC
Confidence 99999999999999963 33432 2 222334677777 445553
No 159
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=96.23 E-value=0.028 Score=55.37 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=63.9
Q ss_pred cCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHH---HHHHH-----cCCc--eEEEe--------------cCcc-cHH
Q 001981 789 TDPVKPEAQIVVSSLRSMEISSIMVTGDNWATAN---AIAKE-----VGIG--KVFAE--------------TDPV-GKA 843 (986)
Q Consensus 789 ~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~---~~a~~-----~gi~--~~~~~--------------~~p~-~K~ 843 (986)
+|.+.+++.+++++++++|++++++||++...+. ...++ .++. .++.+ -.|+ .|.
T Consensus 25 ~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~ 104 (157)
T smart00775 25 KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKI 104 (157)
T ss_pred cCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccccCCHHHHHH
Confidence 3678999999999999999999999999988874 55555 2342 22211 1232 377
Q ss_pred HHHHHHhH-----cCCEEEEEcCCcccHHHHHhCCce
Q 001981 844 NKIKELQL-----KGMTVAMVGDGINDSPALVAADVG 875 (986)
Q Consensus 844 ~~v~~l~~-----~g~~v~~vGDg~nD~~al~~A~vg 875 (986)
+.++.+++ ....++.+||+.+|+.+-+++++.
T Consensus 105 ~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 105 ACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 77877776 234567799999999999998874
No 160
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=96.22 E-value=0.014 Score=61.00 Aligned_cols=78 Identities=24% Similarity=0.378 Sum_probs=63.3
Q ss_pred CCChhHHHHHHHH--HHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec-------------------------Cc--cc
Q 001981 791 PVKPEAQIVVSSL--RSMEISSIMVTGDNWATANAIAKEVGIGKVFAET-------------------------DP--VG 841 (986)
Q Consensus 791 ~~~~~~~~~i~~l--~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~-------------------------~p--~~ 841 (986)
++.|+.+++++.+ ++.|+.++++|.-+.-....+.+.-|+...|.++ -| --
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~NmC 150 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPPNMC 150 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCCccc
Confidence 6789999999999 4579999999999999999999999995432211 12 25
Q ss_pred HHHHHHHHhHc----C---CEEEEEcCCcccHHH
Q 001981 842 KANKIKELQLK----G---MTVAMVGDGINDSPA 868 (986)
Q Consensus 842 K~~~v~~l~~~----g---~~v~~vGDg~nD~~a 868 (986)
|..+++.+++. | .+|++||||.||.-.
T Consensus 151 K~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp 184 (234)
T PF06888_consen 151 KGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCP 184 (234)
T ss_pred hHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCc
Confidence 88999988765 4 689999999999654
No 161
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.20 E-value=0.027 Score=56.28 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=43.9
Q ss_pred cEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Q 001981 772 TCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI 830 (986)
Q Consensus 772 ~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi 830 (986)
.+++...|+++++ -+.+ -..+.+.+.+|+++|++|+++|......-..+-+.+|+
T Consensus 8 ~lIFtDlD~TLl~-~~ye---~~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v 62 (274)
T COG3769 8 LLIFTDLDGTLLP-HSYE---WQPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGV 62 (274)
T ss_pred eEEEEcccCcccC-CCCC---CCccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCC
Confidence 4566666888777 2222 23477899999999999999999999999999999998
No 162
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.19 E-value=0.016 Score=48.81 Aligned_cols=56 Identities=18% Similarity=0.447 Sum_probs=49.7
Q ss_pred EeecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcC
Q 001981 128 LRIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAG 186 (986)
Q Consensus 128 ~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 186 (986)
...-.|+|.+|..++++.+..++||.++.++...+++++.-+ .++..+.+.+++.|
T Consensus 8 v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~---~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 8 VLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN---VDPVKLLKKLKKTG 63 (73)
T ss_pred EEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe---cCHHHHHHHHHhcC
Confidence 444589999999999999999999999999999999999854 57888999998866
No 163
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.18 E-value=0.024 Score=60.59 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=61.3
Q ss_pred cCCCChhHHHHHHHHHHCCCeEEEEcCCCH---HHHHHHHHHcCCc-----eEEEecCcccHHHHHHHHhHcCCEEEEEc
Q 001981 789 TDPVKPEAQIVVSSLRSMEISSIMVTGDNW---ATANAIAKEVGIG-----KVFAETDPVGKANKIKELQLKGMTVAMVG 860 (986)
Q Consensus 789 ~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~---~~a~~~a~~~gi~-----~~~~~~~p~~K~~~v~~l~~~g~~v~~vG 860 (986)
..++-|++.+.++.|+++|+++.++|++.. ..+....+.+|+. .++.+-....|....+.+.+.-..+++||
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~~~K~~rr~~I~~~y~Ivl~vG 195 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDKSSKESRRQKVQKDYEIVLLFG 195 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCCCCcHHHHHHHHhcCCEEEEEC
Confidence 345789999999999999999999999874 3445677888994 34444333456666666666556799999
Q ss_pred CCcccHHHHH
Q 001981 861 DGINDSPALV 870 (986)
Q Consensus 861 Dg~nD~~al~ 870 (986)
|..+|.....
T Consensus 196 D~~~Df~~~~ 205 (266)
T TIGR01533 196 DNLLDFDDFF 205 (266)
T ss_pred CCHHHhhhhh
Confidence 9999986543
No 164
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=96.10 E-value=0.0097 Score=61.38 Aligned_cols=85 Identities=12% Similarity=0.191 Sum_probs=59.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH-cCCc----eEEEe-cC--cccHH----HHHHHHhHcCCEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKE-VGIG----KVFAE-TD--PVGKA----NKIKELQLKGMTVAM 858 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~-~gi~----~~~~~-~~--p~~K~----~~v~~l~~~g~~v~~ 858 (986)
++.|++.++++.|+++|+++.++|+.+.......... .++. .++.. .. .+.+. .+++.+....+.++|
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 163 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVF 163 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEE
Confidence 4689999999999999999999999887665544332 3443 33322 11 12223 334444444577999
Q ss_pred EcCCcccHHHHHhCCce
Q 001981 859 VGDGINDSPALVAADVG 875 (986)
Q Consensus 859 vGDg~nD~~al~~A~vg 875 (986)
|||...|+.+.+++++.
T Consensus 164 vgD~~~di~aA~~aG~~ 180 (199)
T PRK09456 164 FDDNADNIEAANALGIT 180 (199)
T ss_pred eCCCHHHHHHHHHcCCE
Confidence 99999999999999975
No 165
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=96.09 E-value=0.043 Score=54.07 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=87.9
Q ss_pred HHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCC--eEEEEcCC-------CHHHHHHHHHHcCCceE-EE
Q 001981 766 NEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEI--SSIMVTGD-------NWATANAIAKEVGIGKV-FA 835 (986)
Q Consensus 766 ~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi--~~~~~Tgd-------~~~~a~~~a~~~gi~~~-~~ 835 (986)
+.+.|.+.+.+-.|+++.. --++++.++..+.+++|++.+. ++.++|.. +...|+.+.+.+||..+ +.
T Consensus 36 Lk~~Gik~li~DkDNTL~~--~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~ 113 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTP--PYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHR 113 (168)
T ss_pred hhhcCceEEEEcCCCCCCC--CCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeC
Confidence 5667888888888888643 3478899999999999999976 49999986 48999999999999865 44
Q ss_pred ecCcccHHHHHHHHhHc-----CCEEEEEcCC-cccHHHHHhCC-ceEEe
Q 001981 836 ETDPVGKANKIKELQLK-----GMTVAMVGDG-INDSPALVAAD-VGMAI 878 (986)
Q Consensus 836 ~~~p~~K~~~v~~l~~~-----g~~v~~vGDg-~nD~~al~~A~-vgia~ 878 (986)
.-.|....++++.++.+ .++++||||- .-|+-+-...+ .+|-+
T Consensus 114 ~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv 163 (168)
T PF09419_consen 114 AKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILV 163 (168)
T ss_pred CCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEE
Confidence 56787777888888765 6789999998 67887776666 44433
No 166
>PRK10444 UMP phosphatase; Provisional
Probab=96.08 E-value=0.028 Score=59.96 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=39.3
Q ss_pred EEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH---cCC
Q 001981 784 GAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKE---VGI 830 (986)
Q Consensus 784 G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~---~gi 830 (986)
|++.-.+.+-|++.+++++|+++|++++++||+...+...++++ +|+
T Consensus 10 GtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~ 59 (248)
T PRK10444 10 GVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGV 59 (248)
T ss_pred CceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 45555678899999999999999999999999988777776666 466
No 167
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.029 Score=47.25 Aligned_cols=56 Identities=23% Similarity=0.424 Sum_probs=48.6
Q ss_pred EEecCCCChhHHHHHHHHHhCCCCceEEEeeccCceEEEEeCCCCCCHHHHHHHHHHcC
Q 001981 54 FKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAG 112 (986)
Q Consensus 54 ~~v~gm~C~~C~~~I~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~G 112 (986)
..--+|+|.+|..+|++.++.++||.++.++...+++++.-. .++..+.+.+.+.|
T Consensus 8 v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~---~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 8 VLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN---VDPVKLLKKLKKTG 63 (73)
T ss_pred EEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe---cCHHHHHHHHHhcC
Confidence 334479999999999999999999999999999999999854 56788888888766
No 168
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=96.00 E-value=0.011 Score=61.66 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=58.0
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHH--HHHHHHHcCC----ceEEEec-----CcccH--HHHHHHHhHcCCEE
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWAT--ANAIAKEVGI----GKVFAET-----DPVGK--ANKIKELQLKGMTV 856 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~--a~~~a~~~gi----~~~~~~~-----~p~~K--~~~v~~l~~~g~~v 856 (986)
-++.|++.++++.|+++|++++++|+..... ........++ +.++... .|+.. ..+++.+....+.+
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~~~ 172 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPEEC 172 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 3578999999999999999999999875432 3333333454 3333221 22211 22334443345679
Q ss_pred EEEcCCcccHHHHHhCCce
Q 001981 857 AMVGDGINDSPALVAADVG 875 (986)
Q Consensus 857 ~~vGDg~nD~~al~~A~vg 875 (986)
+||||...|+.+.++|++-
T Consensus 173 l~i~D~~~di~aA~~aG~~ 191 (211)
T TIGR02247 173 VFLDDLGSNLKPAAALGIT 191 (211)
T ss_pred EEEcCCHHHHHHHHHcCCE
Confidence 9999999999999999975
No 169
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=95.85 E-value=0.016 Score=59.12 Aligned_cols=82 Identities=17% Similarity=0.108 Sum_probs=61.2
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecC-------cccHH----HHHHHHhHcCCEEEEEc
Q 001981 792 VKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETD-------PVGKA----NKIKELQLKGMTVAMVG 860 (986)
Q Consensus 792 ~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~-------p~~K~----~~v~~l~~~g~~v~~vG 860 (986)
+.|+ .+.++.|++. +++.++||.....++...+.+|+..+|..+- .+.+. ...+.+....+.+++||
T Consensus 89 ~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~ig 166 (188)
T PRK10725 89 PLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFE 166 (188)
T ss_pred CccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEe
Confidence 3454 6899999875 8999999999999999999999976554321 11222 33344443456699999
Q ss_pred CCcccHHHHHhCCce
Q 001981 861 DGINDSPALVAADVG 875 (986)
Q Consensus 861 Dg~nD~~al~~A~vg 875 (986)
|..+|+.+.+.|++-
T Consensus 167 Ds~~di~aA~~aG~~ 181 (188)
T PRK10725 167 DADFGIQAARAAGMD 181 (188)
T ss_pred ccHhhHHHHHHCCCE
Confidence 999999999999965
No 170
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.80 E-value=0.067 Score=57.51 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=38.9
Q ss_pred EEEEECCEEEEEEEecCC----CChhHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHHHHcCC
Q 001981 774 VLVAIDGRVAGAFAVTDP----VKPEAQIVVSSLRSMEISSIMVTGDNWAT---ANAIAKEVGI 830 (986)
Q Consensus 774 i~va~~~~~~G~i~~~d~----~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~---a~~~a~~~gi 830 (986)
+++-.||++ .-.+. +-|++.++|++||++|++++++||++..+ .....+.+|+
T Consensus 4 i~~D~DGtl----~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~ 63 (257)
T TIGR01458 4 VLLDISGVL----YISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGF 63 (257)
T ss_pred EEEeCCCeE----EeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCC
Confidence 444445554 34455 88999999999999999999999976554 4455566777
No 171
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=95.77 E-value=0.015 Score=60.95 Aligned_cols=85 Identities=11% Similarity=0.117 Sum_probs=63.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEe--cC----c--ccHHH----HHHHHhHcCCEEE
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAE--TD----P--VGKAN----KIKELQLKGMTVA 857 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~--~~----p--~~K~~----~v~~l~~~g~~v~ 857 (986)
-++.|++.++++.| ++++.++|+.....+....+.+|+...|.. ++ . +.+.+ +.+.+.-..+.++
T Consensus 87 ~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 163 (221)
T PRK10563 87 LEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCI 163 (221)
T ss_pred CCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 35678999999998 489999999999999999999999755531 11 1 12223 3333433446799
Q ss_pred EEcCCcccHHHHHhCCceEE
Q 001981 858 MVGDGINDSPALVAADVGMA 877 (986)
Q Consensus 858 ~vGDg~nD~~al~~A~vgia 877 (986)
||||+.+|+.+.++|++.+.
T Consensus 164 ~igDs~~di~aA~~aG~~~i 183 (221)
T PRK10563 164 LVDDSSAGAQSGIAAGMEVF 183 (221)
T ss_pred EEeCcHhhHHHHHHCCCEEE
Confidence 99999999999999998754
No 172
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=95.51 E-value=0.031 Score=56.79 Aligned_cols=83 Identities=18% Similarity=0.224 Sum_probs=62.6
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE----Eec--C-----cccH----HHHHHHHhHcCCE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVF----AET--D-----PVGK----ANKIKELQLKGMT 855 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~----~~~--~-----p~~K----~~~v~~l~~~g~~ 855 (986)
++.+++.+++++|+ .+++++|+.+...+....+++|+..+| +.- . ++.+ ..+++.+....+.
T Consensus 84 ~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 160 (184)
T TIGR01993 84 KPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPER 160 (184)
T ss_pred CCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCccc
Confidence 47899999999997 479999999999999999999995433 221 1 1222 2344445545678
Q ss_pred EEEEcCCcccHHHHHhCCceE
Q 001981 856 VAMVGDGINDSPALVAADVGM 876 (986)
Q Consensus 856 v~~vGDg~nD~~al~~A~vgi 876 (986)
++||||...|+.+.+.+++..
T Consensus 161 ~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 161 AIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred eEEEeCCHHHHHHHHHcCCEE
Confidence 999999999999999998753
No 173
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=95.43 E-value=0.091 Score=54.60 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=57.7
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHHHHcCCce---EEEec-Cccc------HHHHHHHHhHcCC-E
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWAT---ANAIAKEVGIGK---VFAET-DPVG------KANKIKELQLKGM-T 855 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~---a~~~a~~~gi~~---~~~~~-~p~~------K~~~v~~l~~~g~-~ 855 (986)
-+.-|++.++++.|+++|++++++||+.... +..-.++.|++. .+-+- .... |.+.-+.+.++|. .
T Consensus 119 apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrI 198 (229)
T TIGR01675 119 APALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRI 198 (229)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecCCCCCCchHhHHHHHHHHHHHhCCceE
Confidence 3678999999999999999999999999766 555566788863 33321 1112 6666667777775 5
Q ss_pred EEEEcCCcccH
Q 001981 856 VAMVGDGINDS 866 (986)
Q Consensus 856 v~~vGDg~nD~ 866 (986)
++.+||..+|.
T Consensus 199 v~~iGDq~sDl 209 (229)
T TIGR01675 199 WGNIGDQWSDL 209 (229)
T ss_pred EEEECCChHHh
Confidence 78999999996
No 174
>PLN02151 trehalose-phosphatase
Probab=95.28 E-value=0.18 Score=55.88 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=43.6
Q ss_pred cCcEEEEEECCEEEEEEEecCC--CChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Q 001981 770 ARTCVLVAIDGRVAGAFAVTDP--VKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAK 826 (986)
Q Consensus 770 g~~~i~va~~~~~~G~i~~~d~--~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~ 826 (986)
.+..+++-+||+++-+..--|. +.++.+++|++|. .+..++++||++......+..
T Consensus 97 ~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 97 KQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLA-KCFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred CceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHh-cCCCEEEEECCCHHHHHHHcC
Confidence 4567788899999876544443 6789999999999 457899999998887766653
No 175
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=95.22 E-value=0.038 Score=58.74 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=57.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec-----C--cccHHHHH----HHHhHcCCEEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET-----D--PVGKANKI----KELQLKGMTVAMV 859 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~-----~--p~~K~~~v----~~l~~~g~~v~~v 859 (986)
++.|++.++++.|++. +++.++|+.+.. .+.+|+..+|..+ . .+.+.++. +.+....+.++||
T Consensus 113 ~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~V 186 (238)
T PRK10748 113 DVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHV 186 (238)
T ss_pred CCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEE
Confidence 5678999999999975 899999986654 2677886444322 1 12223333 3333345679999
Q ss_pred cCC-cccHHHHHhCCceEEec
Q 001981 860 GDG-INDSPALVAADVGMAIG 879 (986)
Q Consensus 860 GDg-~nD~~al~~A~vgia~~ 879 (986)
||+ ..|+.+.++|++-..+.
T Consensus 187 GD~~~~Di~~A~~aG~~~i~v 207 (238)
T PRK10748 187 GDDLTTDVAGAIRCGMQACWI 207 (238)
T ss_pred cCCcHHHHHHHHHCCCeEEEE
Confidence 999 59999999999765543
No 176
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=95.20 E-value=0.12 Score=55.21 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=42.9
Q ss_pred EEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHHcCC
Q 001981 773 CVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTG---DNWATANAIAKEVGI 830 (986)
Q Consensus 773 ~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tg---d~~~~a~~~a~~~gi 830 (986)
.+++-.||++. -.+.+-+++.++|++|+++|++++++|| +.........+.+|+
T Consensus 3 ~~~~D~DGtl~----~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~ 59 (249)
T TIGR01457 3 GYLIDLDGTMY----KGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDI 59 (249)
T ss_pred EEEEeCCCceE----cCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 44555566554 4566677999999999999999999996 778888888888888
No 177
>PHA02597 30.2 hypothetical protein; Provisional
Probab=95.03 E-value=0.072 Score=54.76 Aligned_cols=83 Identities=17% Similarity=0.158 Sum_probs=56.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceE----E-----EecCcccHHHHHHHHh-HcC-CEEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKV----F-----AETDPVGKANKIKELQ-LKG-MTVAMV 859 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~----~-----~~~~p~~K~~~v~~l~-~~g-~~v~~v 859 (986)
++.|++.+++++|++.+ +.+++|..+........+.+|+... | ++.. ..|.+++..+. +.| +.++||
T Consensus 74 ~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~-~~kp~~~~~a~~~~~~~~~v~v 151 (197)
T PHA02597 74 SAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHD-ESKEKLFIKAKEKYGDRVVCFV 151 (197)
T ss_pred cCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccC-cccHHHHHHHHHHhCCCcEEEe
Confidence 47899999999999975 5677787665555556667777432 1 2222 22445444332 223 468899
Q ss_pred cCCcccHHHHHhC--Cce
Q 001981 860 GDGINDSPALVAA--DVG 875 (986)
Q Consensus 860 GDg~nD~~al~~A--~vg 875 (986)
||..+|+.+.++| ++-
T Consensus 152 gDs~~di~aA~~a~~Gi~ 169 (197)
T PHA02597 152 DDLAHNLDAAHEALSQLP 169 (197)
T ss_pred CCCHHHHHHHHHHHcCCc
Confidence 9999999999999 975
No 178
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=94.85 E-value=0.13 Score=54.12 Aligned_cols=114 Identities=22% Similarity=0.263 Sum_probs=75.6
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec---------CcccH--HHHHHHHhHcCCEEEE
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET---------DPVGK--ANKIKELQLKGMTVAM 858 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~---------~p~~K--~~~v~~l~~~g~~v~~ 858 (986)
-++.+++.++++.|+++ ++++++|.-.........+++|+..+|..+ .|+.+ ..+.+.+....+.++|
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~ 176 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALF 176 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEEE
Confidence 35688999999999999 999999998888999999999986554332 23322 2344444444678999
Q ss_pred EcCC-cccHHHHHhCCce-EEecCCcH---HHHHhcCEEEeCCChhHHHHHHH
Q 001981 859 VGDG-INDSPALVAADVG-MAIGAGTD---VAIEAADIVLIKSSLEDVVTAID 906 (986)
Q Consensus 859 vGDg-~nD~~al~~A~vg-ia~~~~~~---~~~~~ad~vl~~~~~~~l~~~i~ 906 (986)
|||+ .||+...++++.- |-+..... ......+..+ .++..+..++.
T Consensus 177 VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i--~~l~~l~~~~~ 227 (229)
T COG1011 177 VGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEI--SSLAELLDLLE 227 (229)
T ss_pred ECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEE--cCHHHHHHHHh
Confidence 9998 6776888888864 33332211 1113455554 44666665543
No 179
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=94.62 E-value=0.092 Score=55.03 Aligned_cols=87 Identities=15% Similarity=0.101 Sum_probs=72.1
Q ss_pred cCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec-----------CcccHHHHHHHHhHcCCEEE
Q 001981 789 TDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET-----------DPVGKANKIKELQLKGMTVA 857 (986)
Q Consensus 789 ~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~-----------~p~~K~~~v~~l~~~g~~v~ 857 (986)
..++.|++.+.++.|+++|+.+.+.|+.+...+..+.+.+|+.++|... .|+-=....+.|.-...+++
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~Cv 163 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECV 163 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeE
Confidence 3478999999999999999999999999999999999999997766542 12333445555555678899
Q ss_pred EEcCCcccHHHHHhCCce
Q 001981 858 MVGDGINDSPALVAADVG 875 (986)
Q Consensus 858 ~vGDg~nD~~al~~A~vg 875 (986)
.|.|+.+.+.|.++|+.-
T Consensus 164 viEDs~~Gi~Aa~aAGm~ 181 (221)
T COG0637 164 VVEDSPAGIQAAKAAGMR 181 (221)
T ss_pred EEecchhHHHHHHHCCCE
Confidence 999999999999999954
No 180
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=94.56 E-value=0.034 Score=50.25 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=53.8
Q ss_pred EEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH---HHcCCceEEEec-CcccHHHHHHHHhH--cCCEEE
Q 001981 784 GAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIA---KEVGIGKVFAET-DPVGKANKIKELQL--KGMTVA 857 (986)
Q Consensus 784 G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a---~~~gi~~~~~~~-~p~~K~~~v~~l~~--~g~~v~ 857 (986)
|++...+++-|++.++|++|+++|++++++|+....+...++ +.+|++.-..++ +|. ....+.|++ .+.+|.
T Consensus 7 Gvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~--~~~~~~l~~~~~~~~v~ 84 (101)
T PF13344_consen 7 GVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSG--MAAAEYLKEHKGGKKVY 84 (101)
T ss_dssp TTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHH--HHHHHHHHHHTTSSEEE
T ss_pred cEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChH--HHHHHHHHhcCCCCEEE
Confidence 344557888999999999999999999999987644433333 678885211111 111 123344444 578899
Q ss_pred EEcCCcccHHHHHhCCc
Q 001981 858 MVGDGINDSPALVAADV 874 (986)
Q Consensus 858 ~vGDg~nD~~al~~A~v 874 (986)
.+|.. .....++.+++
T Consensus 85 vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 85 VLGSD-GLREELREAGF 100 (101)
T ss_dssp EES-H-HHHHHHHHTTE
T ss_pred EEcCH-HHHHHHHHcCC
Confidence 99965 45556666553
No 181
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=94.36 E-value=0.061 Score=53.94 Aligned_cols=88 Identities=27% Similarity=0.364 Sum_probs=65.8
Q ss_pred CCChhHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHcCCceEEEe--------------------------cCcc--c
Q 001981 791 PVKPEAQIVVSSLRSMEI-SSIMVTGDNWATANAIAKEVGIGKVFAE--------------------------TDPV--G 841 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi-~~~~~Tgd~~~~a~~~a~~~gi~~~~~~--------------------------~~p~--~ 841 (986)
|+-|+..++|+.+++.|. .++++|--|.-....+.+..|+.+.|++ +.|. -
T Consensus 84 P~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmC 163 (256)
T KOG3120|consen 84 PIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMC 163 (256)
T ss_pred CCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhh
Confidence 678999999999999996 9999999999999999999999533322 2232 3
Q ss_pred HHHHHHHHhHcC-------CEEEEEcCCcccH-HHHHhCCceEEe
Q 001981 842 KANKIKELQLKG-------MTVAMVGDGINDS-PALVAADVGMAI 878 (986)
Q Consensus 842 K~~~v~~l~~~g-------~~v~~vGDg~nD~-~al~~A~vgia~ 878 (986)
|..++..++..+ +++.+||||.||. |.++...--++|
T Consensus 164 Kg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~am 208 (256)
T KOG3120|consen 164 KGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAM 208 (256)
T ss_pred hhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceec
Confidence 677777766542 3799999999995 444444433444
No 182
>PLN02645 phosphoglycolate phosphatase
Probab=94.31 E-value=0.073 Score=59.02 Aligned_cols=104 Identities=16% Similarity=0.104 Sum_probs=67.6
Q ss_pred cCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH---HHcCCceEEEec-Cccc-HHH
Q 001981 770 ARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIA---KEVGIGKVFAET-DPVG-KAN 844 (986)
Q Consensus 770 g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a---~~~gi~~~~~~~-~p~~-K~~ 844 (986)
....+++-.||++. -.+.+-+++.++|++||++|++++++|++...+...++ +++|++....++ ++.. ...
T Consensus 27 ~~~~~~~D~DGtl~----~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~~~~~ 102 (311)
T PLN02645 27 SVETFIFDCDGVIW----KGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSFAAAA 102 (311)
T ss_pred hCCEEEEeCcCCeE----eCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHHHHHH
Confidence 35677777777664 35677899999999999999999999999866665555 678885322221 1211 112
Q ss_pred HHHHHhH-cCCEEEEEcCCcccHHHHHhCCceEEe
Q 001981 845 KIKELQL-KGMTVAMVGDGINDSPALVAADVGMAI 878 (986)
Q Consensus 845 ~v~~l~~-~g~~v~~vGDg~nD~~al~~A~vgia~ 878 (986)
.++.... .++. +++++...|...++.+++-+.-
T Consensus 103 ~l~~~~~~~~~~-V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 103 YLKSINFPKDKK-VYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred HHHhhccCCCCE-EEEEcCHHHHHHHHHCCCEEec
Confidence 2222211 1344 5555567899999999875543
No 183
>PLN02423 phosphomannomutase
Probab=93.85 E-value=0.47 Score=50.58 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=38.1
Q ss_pred cEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Q 001981 772 TCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIA 825 (986)
Q Consensus 772 ~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a 825 (986)
..+++-.||+++- =..++.+...++|++|++. ++++++||+.........
T Consensus 8 ~i~~~D~DGTLl~---~~~~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~~ 57 (245)
T PLN02423 8 VIALFDVDGTLTA---PRKEATPEMLEFMKELRKV-VTVGVVGGSDLSKISEQL 57 (245)
T ss_pred eEEEEeccCCCcC---CCCcCCHHHHHHHHHHHhC-CEEEEECCcCHHHHHHHh
Confidence 3444667888762 2446889999999999977 999999999887764433
No 184
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=91.84 E-value=0.36 Score=51.73 Aligned_cols=60 Identities=12% Similarity=0.255 Sum_probs=51.2
Q ss_pred cEEEEEECCEEEEEEEecCC--CC-hhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE
Q 001981 772 TCVLVAIDGRVAGAFAVTDP--VK-PEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVF 834 (986)
Q Consensus 772 ~~i~va~~~~~~G~i~~~d~--~~-~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~ 834 (986)
.++++-.|++++.- +.+ +| |++.+++++|+++|++++++|+.....+....+++|++.+|
T Consensus 127 kvIvFDLDgTLi~~---~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 127 HVVVFDLDSTLITD---EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred eEEEEecCCCCcCC---CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 46777788888654 443 55 99999999999999999999999999999999999997655
No 185
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=91.40 E-value=0.4 Score=47.76 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=40.5
Q ss_pred EEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHH---HHHcCC
Q 001981 782 VAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAI---AKEVGI 830 (986)
Q Consensus 782 ~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~---a~~~gi 830 (986)
+-|.+..+|..-|++.|++++||+++.+|..+|......-+.+ .+++|+
T Consensus 14 lSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf 65 (262)
T KOG3040|consen 14 LSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGF 65 (262)
T ss_pred ccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCC
Confidence 4689999999999999999999999999999987655554444 455677
No 186
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=91.07 E-value=1.6 Score=51.36 Aligned_cols=85 Identities=18% Similarity=0.178 Sum_probs=62.0
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH-cCCceEEEe-------------------cCcccHHHHHHHHhH
Q 001981 792 VKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKE-VGIGKVFAE-------------------TDPVGKANKIKELQL 851 (986)
Q Consensus 792 ~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~-~gi~~~~~~-------------------~~p~~K~~~v~~l~~ 851 (986)
+++++.+. +++.|.+ +++|+-....++.+|++ +|++.+.+. +.-++|.+-++....
T Consensus 111 l~~~a~~~---~~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g 186 (497)
T PLN02177 111 VHPETWRV---FNSFGKR-YIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKEFG 186 (497)
T ss_pred cCHHHHHH---HHhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHHHHhC
Confidence 66665554 4567754 99999999999999987 899865321 122457777764332
Q ss_pred cCCEEEEEcCCcccHHHHHhCCceEEecC
Q 001981 852 KGMTVAMVGDGINDSPALVAADVGMAIGA 880 (986)
Q Consensus 852 ~g~~v~~vGDg~nD~~al~~A~vgia~~~ 880 (986)
......+.||+.||.|+|+.|+-+.+++.
T Consensus 187 ~~~~~~aYgDS~sD~plL~~a~e~y~V~~ 215 (497)
T PLN02177 187 DALPDLGLGDRETDHDFMSICKEGYMVPR 215 (497)
T ss_pred CCCceEEEECCccHHHHHHhCCccEEeCC
Confidence 12224789999999999999999999975
No 187
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=91.06 E-value=0.43 Score=56.16 Aligned_cols=101 Identities=18% Similarity=0.151 Sum_probs=66.4
Q ss_pred cEEEEEECCEEEEEE----EecC-----CCChhHHHHHHHHHHCCCeEEEEcCCCH------------HHHHHHHHHcCC
Q 001981 772 TCVLVAIDGRVAGAF----AVTD-----PVKPEAQIVVSSLRSMEISSIMVTGDNW------------ATANAIAKEVGI 830 (986)
Q Consensus 772 ~~i~va~~~~~~G~i----~~~d-----~~~~~~~~~i~~l~~~gi~~~~~Tgd~~------------~~a~~~a~~~gi 830 (986)
.++++-+|++++-.- ...| -+.|++.+.|+.|++.|++++++|+... ..+..+.+++|+
T Consensus 169 Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgi 248 (526)
T TIGR01663 169 KIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGV 248 (526)
T ss_pred cEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCC
Confidence 577788888887421 1222 1479999999999999999999998665 457788899998
Q ss_pred c-eEEEecC----cccHHHHHHHHh-Hc-------CCEEEEEcCCcccHHHHHhC
Q 001981 831 G-KVFAETD----PVGKANKIKELQ-LK-------GMTVAMVGDGINDSPALVAA 872 (986)
Q Consensus 831 ~-~~~~~~~----p~~K~~~v~~l~-~~-------g~~v~~vGDg~nD~~al~~A 872 (986)
. .++.... ...+...+..+. +. ...++||||...|..+-+.|
T Consensus 249 pfdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~a 303 (526)
T TIGR01663 249 PFQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGKAA 303 (526)
T ss_pred ceEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHHhc
Confidence 4 1111111 012223333332 22 24699999999998775544
No 188
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=90.78 E-value=0.17 Score=50.74 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=54.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec---------CcccH--HHHHHHHhHcCCEEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET---------DPVGK--ANKIKELQLKGMTVAMV 859 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~---------~p~~K--~~~v~~l~~~g~~v~~v 859 (986)
++.|++.++++ +++++|+-+........+++|+..+|..+ .|+.. ..+.+.+....+.++||
T Consensus 90 ~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~v 162 (175)
T TIGR01493 90 PPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLMV 162 (175)
T ss_pred CCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeE
Confidence 57899999998 37899999999999999999996544321 12221 33445554455779999
Q ss_pred cCCcccHHHHHhC
Q 001981 860 GDGINDSPALVAA 872 (986)
Q Consensus 860 GDg~nD~~al~~A 872 (986)
||+..|+.+.+++
T Consensus 163 gD~~~Di~~A~~~ 175 (175)
T TIGR01493 163 AAHQWDLIGARKF 175 (175)
T ss_pred ecChhhHHHHhcC
Confidence 9999999887654
No 189
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=90.52 E-value=0.29 Score=51.40 Aligned_cols=78 Identities=23% Similarity=0.327 Sum_probs=56.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHH---HHHHHHHHcCCc---eEEEec-Cc-------ccHHHHHHHHhHcC-CE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWA---TANAIAKEVGIG---KVFAET-DP-------VGKANKIKELQLKG-MT 855 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~---~a~~~a~~~gi~---~~~~~~-~p-------~~K~~~v~~l~~~g-~~ 855 (986)
+.-|++.+.++.++++|++|+++||++.. .+..-.++.|+. .++-+- .+ +.|...-+.+++.| +.
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~I 194 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGYRI 194 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTEEE
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHcCCcE
Confidence 44578999999999999999999998643 455556777873 333222 11 23777888888885 46
Q ss_pred EEEEcCCcccHHH
Q 001981 856 VAMVGDGINDSPA 868 (986)
Q Consensus 856 v~~vGDg~nD~~a 868 (986)
++++||..+|...
T Consensus 195 i~~iGD~~~D~~~ 207 (229)
T PF03767_consen 195 IANIGDQLSDFSG 207 (229)
T ss_dssp EEEEESSGGGCHC
T ss_pred EEEeCCCHHHhhc
Confidence 8899999999755
No 190
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=89.72 E-value=0.73 Score=48.07 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=67.7
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec---------CcccH--HHHHHHHhHcCCEEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET---------DPVGK--ANKIKELQLKGMTVAMV 859 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~---------~p~~K--~~~v~~l~~~g~~v~~v 859 (986)
.+-++..+++++||+.|..+.++|.-.... +.+...+|+..+|..+ .|+.+ ...++.+..+.+.+++|
T Consensus 113 ~~~~~~~~~lq~lR~~g~~l~iisN~d~r~-~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhI 191 (237)
T KOG3085|consen 113 KYLDGMQELLQKLRKKGTILGIISNFDDRL-RLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVHI 191 (237)
T ss_pred eeccHHHHHHHHHHhCCeEEEEecCCcHHH-HHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEe
Confidence 344566699999999998888888643333 3777788886554332 34443 34667777778889999
Q ss_pred cCC-cccHHHHHhCC-ceEEecCCcHHHHH
Q 001981 860 GDG-INDSPALVAAD-VGMAIGAGTDVAIE 887 (986)
Q Consensus 860 GDg-~nD~~al~~A~-vgia~~~~~~~~~~ 887 (986)
||. .||....+.++ .++-+.++....++
T Consensus 192 gD~l~nD~~gA~~~G~~ailv~~~~~~~~~ 221 (237)
T KOG3085|consen 192 GDLLENDYEGARNLGWHAILVDNSITALKE 221 (237)
T ss_pred cCccccccHhHHHcCCEEEEEccccchhhh
Confidence 998 89999999998 44666655444443
No 191
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=89.24 E-value=1.3 Score=48.24 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=62.6
Q ss_pred EEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHH---HHHHHHHHcCCceEEEecCcccHHHHHHHH
Q 001981 773 CVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWA---TANAIAKEVGIGKVFAETDPVGKANKIKEL 849 (986)
Q Consensus 773 ~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~---~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l 849 (986)
.+++-.||++ .-.+.+-+++.++|++|+++|++++++||.... ....-.+.+|++.-..++.... ....+.|
T Consensus 4 ~~~~D~DGtl----~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~-~~~~~~l 78 (279)
T TIGR01452 4 GFIFDCDGVL----WLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSA-LCAARLL 78 (279)
T ss_pred EEEEeCCCce----EcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHH-HHHHHHH
Confidence 4555566666 336777889999999999999999999996533 3223446688843222211111 1223344
Q ss_pred hH---cCCEEEEEcCCcccHHHHHhCCceEE
Q 001981 850 QL---KGMTVAMVGDGINDSPALVAADVGMA 877 (986)
Q Consensus 850 ~~---~g~~v~~vGDg~nD~~al~~A~vgia 877 (986)
++ .+.+|+++|+. .....++.+++-+.
T Consensus 79 ~~~~~~~~~v~~iG~~-~~~~~l~~~g~~~~ 108 (279)
T TIGR01452 79 RQPPDAPKAVYVIGEE-GLRAELDAAGIRLA 108 (279)
T ss_pred HhhCcCCCEEEEEcCH-HHHHHHHHCCCEEe
Confidence 44 35789999985 34567777776654
No 192
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=89.17 E-value=2.8 Score=36.14 Aligned_cols=65 Identities=38% Similarity=0.606 Sum_probs=50.4
Q ss_pred EEEEeecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCCc
Q 001981 125 VCRLRIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAGFGA 189 (986)
Q Consensus 125 ~~~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~ 189 (986)
+..+.+.++.|..|...++..+...+++....++.......+.+++.......+....++.||..
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPS 88 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCe
Confidence 35677999999999999999999999998888888888877776554335555555566777754
No 193
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=89.14 E-value=1.4 Score=43.72 Aligned_cols=86 Identities=15% Similarity=0.232 Sum_probs=60.1
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEc-CCCHHHHHHHHHHcCCc----------eEE--EecCcccHHHHHHHHhHc----C
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVT-GDNWATANAIAKEVGIG----------KVF--AETDPVGKANKIKELQLK----G 853 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~T-gd~~~~a~~~a~~~gi~----------~~~--~~~~p~~K~~~v~~l~~~----g 853 (986)
.+.|+++++++.|+++|+++.++| -+.+..|+.+.+.+++. .+| .+.-|..|..-.+.+++. -
T Consensus 45 ~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~tgI~y 124 (169)
T PF12689_consen 45 SLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHRKTGIPY 124 (169)
T ss_dssp ---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHHHHHHHHHH---G
T ss_pred EeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHHHHHHHHhcCCCh
Confidence 357999999999999999999999 57889999999999998 555 345788899888888764 3
Q ss_pred CEEEEEcCCcccHHHHHhCCceEEe
Q 001981 854 MTVAMVGDGINDSPALVAADVGMAI 878 (986)
Q Consensus 854 ~~v~~vGDg~nD~~al~~A~vgia~ 878 (986)
+.++++=|-.......+. +||..
T Consensus 125 ~eMlFFDDe~~N~~~v~~--lGV~~ 147 (169)
T PF12689_consen 125 EEMLFFDDESRNIEVVSK--LGVTC 147 (169)
T ss_dssp GGEEEEES-HHHHHHHHT--TT-EE
T ss_pred hHEEEecCchhcceeeEe--cCcEE
Confidence 458899888665555554 45443
No 194
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=89.05 E-value=0.47 Score=47.00 Aligned_cols=86 Identities=9% Similarity=0.081 Sum_probs=61.9
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-EEEec-----CcccHHHHHHHHh---HcCCEEEEEc
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGK-VFAET-----DPVGKANKIKELQ---LKGMTVAMVG 860 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~-~~~~~-----~p~~K~~~v~~l~---~~g~~v~~vG 860 (986)
=..||++.+.+++|++. +++++.|......|+.+.+.++... ++... ....|...++.|. ....+|+|||
T Consensus 41 v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIiVD 119 (162)
T TIGR02251 41 VFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVIIID 119 (162)
T ss_pred EEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEEEEe
Confidence 34799999999999988 9999999999999999999999864 33221 1111222333343 3346799999
Q ss_pred CCcccHHHHHhCCceE
Q 001981 861 DGINDSPALVAADVGM 876 (986)
Q Consensus 861 Dg~nD~~al~~A~vgi 876 (986)
|...|..+-..+++-|
T Consensus 120 D~~~~~~~~~~NgI~i 135 (162)
T TIGR02251 120 NSPYSYSLQPDNAIPI 135 (162)
T ss_pred CChhhhccCccCEeec
Confidence 9998877666665443
No 195
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=89.03 E-value=2 Score=37.13 Aligned_cols=64 Identities=20% Similarity=0.334 Sum_probs=51.0
Q ss_pred ceeeeecCCCCchhHHHHHHhhcCCCCeEEEEEecCCCEEEEEeCCCCCChHHHHHHHHHhcCC
Q 001981 200 KVHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEEASHG 263 (986)
Q Consensus 200 ~~~~~v~Gm~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g~~ 263 (986)
+..+.+.|+.|..|...++..+...+|+....++.......+.+++.......+...++..||+
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 87 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYP 87 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4567799999999999999999999999999999999988888766444555555555666654
No 196
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=89.02 E-value=0.91 Score=48.74 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=49.8
Q ss_pred cEEEEEECCEEEEEEEecCCC--C-hhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE
Q 001981 772 TCVLVAIDGRVAGAFAVTDPV--K-PEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVF 834 (986)
Q Consensus 772 ~~i~va~~~~~~G~i~~~d~~--~-~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~ 834 (986)
.++++-.|++++.- +.++ | |++.+++++|+++|++++++|+.+...+....+.+|++.+|
T Consensus 129 ~~i~~D~D~TL~~~---~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 129 HVIVFDLDSTLITD---EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred cEEEEecCCCccCC---CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc
Confidence 46777778887654 4444 4 99999999999999999999988888889999999997544
No 197
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=88.93 E-value=2.7 Score=44.73 Aligned_cols=78 Identities=24% Similarity=0.286 Sum_probs=53.2
Q ss_pred cCCCChhHHHHHHHHHHCCCeEEEEcCCCHHH---HHHHHHHcCCc---eEEEecCc--------ccHHHHHHHHhHcCC
Q 001981 789 TDPVKPEAQIVVSSLRSMEISSIMVTGDNWAT---ANAIAKEVGIG---KVFAETDP--------VGKANKIKELQLKGM 854 (986)
Q Consensus 789 ~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~---a~~~a~~~gi~---~~~~~~~p--------~~K~~~v~~l~~~g~ 854 (986)
..+.-|++.+..+.+++.|++++++||+.... +..-.++.|+. ..+-+-.. +.|...-+++.++|.
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGY 222 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGY 222 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCc
Confidence 34667899999999999999999999998542 23333456874 23333111 124444455666665
Q ss_pred -EEEEEcCCcccH
Q 001981 855 -TVAMVGDGINDS 866 (986)
Q Consensus 855 -~v~~vGDg~nD~ 866 (986)
.++.+||..+|.
T Consensus 223 rIv~~iGDq~sDl 235 (275)
T TIGR01680 223 NIVGIIGDQWNDL 235 (275)
T ss_pred eEEEEECCCHHhc
Confidence 588999999996
No 198
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=88.75 E-value=0.7 Score=45.75 Aligned_cols=50 Identities=14% Similarity=0.268 Sum_probs=44.0
Q ss_pred chhHHHHHHhhcCCCCeEEEEEecCCCE-------------------EEEEeCCCCCChHHHHHHHHHh
Q 001981 211 SEDATFVQNFLESTQGVSQVEIDLSEHK-------------------VTVSYDPNLTGPRSIIQYLEEA 260 (986)
Q Consensus 211 ~~c~~~ie~~l~~~~gV~~~~vn~~~~~-------------------~~v~~~~~~~~~~~i~~~i~~~ 260 (986)
..|=|-+|+.+.++|||.++++-++++. +.|.|||..++.++|++..=+.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~~ 78 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQI 78 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHh
Confidence 3699999999999999999999887764 8999999999999999877554
No 199
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=88.34 E-value=1.4 Score=46.74 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=30.2
Q ss_pred EEECCEEEEEEEecC--CCChhHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHcCC
Q 001981 776 VAIDGRVAGAFAVTD--PVKPEAQIVVSSLRSM-EISSIMVTGDNWATANAIAKEVGI 830 (986)
Q Consensus 776 va~~~~~~G~i~~~d--~~~~~~~~~i~~l~~~-gi~~~~~Tgd~~~~a~~~a~~~gi 830 (986)
+-+||++..+..-.+ .+.+++.+++++|.+. +..|+|+||++....+.+..--++
T Consensus 2 lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~~~~~~i 59 (235)
T PF02358_consen 2 LDYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLERFGGIPNI 59 (235)
T ss_dssp EE-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH-S-SS-
T ss_pred cccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHhcCCCCc
Confidence 345666665555333 5578999999999887 457999999999986666554445
No 200
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=88.03 E-value=5.4 Score=42.66 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=54.4
Q ss_pred HHHHhccCcEEEEEECCEEEEEEEecC--CCChhHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHcCC
Q 001981 764 MKNEQLARTCVLVAIDGRVAGAFAVTD--PVKPEAQIVVSSLRSM-EISSIMVTGDNWATANAIAKEVGI 830 (986)
Q Consensus 764 ~~~~~~g~~~i~va~~~~~~G~i~~~d--~~~~~~~~~i~~l~~~-gi~~~~~Tgd~~~~a~~~a~~~gi 830 (986)
..+....++.+++-+||++...+-..+ .+.++..+++++|.+. ...++++||+.......+..-.||
T Consensus 11 ~~~~~a~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i 80 (266)
T COG1877 11 EPYLNARKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGI 80 (266)
T ss_pred cccccccceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCc
Confidence 344556778889999999887776554 6688999999999988 457999999999999998876566
No 201
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=87.64 E-value=3.6 Score=44.06 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=69.3
Q ss_pred EEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH----cCCceEEEecCcccHHHHHHHHhHc--CCE
Q 001981 782 VAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKE----VGIGKVFAETDPVGKANKIKELQLK--GMT 855 (986)
Q Consensus 782 ~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~----~gi~~~~~~~~p~~K~~~v~~l~~~--g~~ 855 (986)
+=|++...+++-|++.++|++|+++|++++++|+.+..+.+.++++ .+++.-..++-.... .....++++ +.+
T Consensus 15 lDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~-at~~~l~~~~~~~k 93 (269)
T COG0647 15 LDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGD-ATADYLAKQKPGKK 93 (269)
T ss_pred CcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHH-HHHHHHHhhCCCCE
Confidence 3467778999999999999999999999999998876666644444 333211111110111 122333333 368
Q ss_pred EEEEcCCcccHHHHHhCCceEEecCCcHHHHHhcCEEEeCC
Q 001981 856 VAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKS 896 (986)
Q Consensus 856 v~~vGDg~nD~~al~~A~vgia~~~~~~~~~~~ad~vl~~~ 896 (986)
|.++|.. .+.+.++.+++-+.-.... ...|+|+...
T Consensus 94 v~viG~~-~l~~~l~~~G~~~~~~~~~----~~~d~Vv~g~ 129 (269)
T COG0647 94 VYVIGEE-GLKEELEGAGFELVDEEEP----ARVDAVVVGL 129 (269)
T ss_pred EEEECCc-chHHHHHhCCcEEeccCCC----CcccEEEEec
Confidence 9999953 5678899988766653221 1157777643
No 202
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=87.54 E-value=2.9 Score=40.73 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=63.5
Q ss_pred cCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHH---HHHHHHc-----CCc-----------------eEEEecCcccHH
Q 001981 789 TDPVKPEAQIVVSSLRSMEISSIMVTGDNWATA---NAIAKEV-----GIG-----------------KVFAETDPVGKA 843 (986)
Q Consensus 789 ~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a---~~~a~~~-----gi~-----------------~~~~~~~p~~K~ 843 (986)
.|..++++.+..+.++++|++++-+|+++...+ +...++. ++. ++..+-..+.|.
T Consensus 25 ~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~~sP~~l~~al~rEvi~~~p~~fK~ 104 (157)
T PF08235_consen 25 KDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVLLSPDSLFSALHREVISKDPEEFKI 104 (157)
T ss_pred chhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEEECCcchhhhhhccccccChHHHHH
Confidence 468899999999999999999999999985544 3444444 331 111111234688
Q ss_pred HHHHHHhHc----C-CEEEEEcCCcccHHHHHhCCce
Q 001981 844 NKIKELQLK----G-MTVAMVGDGINDSPALVAADVG 875 (986)
Q Consensus 844 ~~v~~l~~~----g-~~v~~vGDg~nD~~al~~A~vg 875 (986)
..++.++.. + .-.+..|+..+|+.+-+++++.
T Consensus 105 ~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 105 ACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 888888865 2 3477889999999999998874
No 203
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=87.49 E-value=3 Score=41.75 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=55.5
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCC---------------HHHHHHHHHHcCC--ce-EEEecCccc-------HHH-H
Q 001981 792 VKPEAQIVVSSLRSMEISSIMVTGDN---------------WATANAIAKEVGI--GK-VFAETDPVG-------KAN-K 845 (986)
Q Consensus 792 ~~~~~~~~i~~l~~~gi~~~~~Tgd~---------------~~~a~~~a~~~gi--~~-~~~~~~p~~-------K~~-~ 845 (986)
+.+++.+++..|+++|++++|+|.-+ +..-....+..|+ +. +++.-.|++ |.. +
T Consensus 32 ~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~ 111 (181)
T COG0241 32 FIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGML 111 (181)
T ss_pred cCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHH
Confidence 57899999999999999999999721 1112233444553 33 233333432 222 3
Q ss_pred HHHHhHc---CCEEEEEcCCcccHHHHHhCCce
Q 001981 846 IKELQLK---GMTVAMVGDGINDSPALVAADVG 875 (986)
Q Consensus 846 v~~l~~~---g~~v~~vGDg~nD~~al~~A~vg 875 (986)
.+.+++. -....||||...|..+..++++.
T Consensus 112 ~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~ 144 (181)
T COG0241 112 LSALKEYNIDLSRSYVVGDRLTDLQAAENAGIK 144 (181)
T ss_pred HHHHHHhCCCccceEEecCcHHHHHHHHHCCCC
Confidence 3333333 36799999999999999999977
No 204
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=87.29 E-value=2.8 Score=46.66 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=35.3
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-C
Q 001981 793 KPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEV-G 829 (986)
Q Consensus 793 ~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~-g 829 (986)
.|++.+++++|+++|+++.++|+.+...+..+.+.+ |
T Consensus 186 ~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g 223 (343)
T TIGR02244 186 DPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG 223 (343)
T ss_pred chhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence 689999999999999999999999999999999996 7
No 205
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=86.45 E-value=1.1e+02 Score=39.48 Aligned_cols=127 Identities=16% Similarity=0.186 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHhCCCCceEEEee--ccCceEEEEeCCCCCCHH----HHHHHHHHcCCC--CC-------CCCcccceEE
Q 001981 62 ASCATSIESVLSNLNGVESAVVS--PLEGQAVVKFIPGLITAK----RIKETVEEAGFP--VD-------DFPEQDIAVC 126 (986)
Q Consensus 62 ~~C~~~I~~~l~~~~gv~~~~v~--~~~~~~~v~~~~~~~~~~----~i~~~v~~~G~~--~~-------~~~~~~~~~~ 126 (986)
..-...+|++++.++|+.+++-. ......++.++.+ .+++ ++.+.+.+.... .. ..+..+..-.
T Consensus 60 ~~Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~-~d~d~A~~~V~~kv~~~~~~LP~~~~~p~v~~~~~~~~~i~ 138 (1009)
T COG0841 60 DSVTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELG-TDPDTAAVQVQNKIQQAESRLPSGVQQPGVTVEKSSSNPLL 138 (1009)
T ss_pred HHHhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCC-CChHHHHHHHHHHHHHHHhcCCCccCCCceEeccCCCceEE
Confidence 34566789999999998876643 2555566667654 2333 666777665522 11 0111112223
Q ss_pred EEeecC--ccCh----hhHHHHHHHhhccCCEEEEEeecC-CCeEEEEeCCCC-----CChhHHHHHHHhcCCCc
Q 001981 127 RLRIKG--MMCT----SCSESVERAIEMVDGVKKAVVGVA-LEEAKVHFDPNL-----TDTDHIVEAIEDAGFGA 189 (986)
Q Consensus 127 ~~~i~g--m~C~----~C~~~ie~~l~~~~gV~~~~v~~~-~~~~~v~~~~~~-----~~~~~i~~~i~~~Gy~~ 189 (986)
.+.+.+ +.-. --...++..|.+++||.++++.=. ...+.|..||.+ +++.++..+++......
T Consensus 139 ~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~~ai~~qN~~~ 213 (1009)
T COG0841 139 ILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQSAIRAQNVQV 213 (1009)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHHHHHHHhCccc
Confidence 444444 3211 123568999999999999998766 456789999864 57789999998765543
No 206
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=86.37 E-value=1.4 Score=42.92 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=43.0
Q ss_pred chhHHHHHHhhcCCCCeEEEEEecCC--------------CEEEEEeCCCCCChHHHHHHHHHh
Q 001981 211 SEDATFVQNFLESTQGVSQVEIDLSE--------------HKVTVSYDPNLTGPRSIIQYLEEA 260 (986)
Q Consensus 211 ~~c~~~ie~~l~~~~gV~~~~vn~~~--------------~~~~v~~~~~~~~~~~i~~~i~~~ 260 (986)
..|=|-+|..+.++|||.++++-++. +.+.|.|||..++.++|++..=..
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~~ 71 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFEI 71 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHHh
Confidence 36999999999999999999987755 348899999999999999977554
No 207
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=86.26 E-value=0.82 Score=49.84 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=49.0
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCCHHHH-H---------H----HHHHcCCceEE-EecCcccHHHHHHHHhHcCCEEE
Q 001981 793 KPEAQIVVSSLRSMEISSIMVTGDNWATA-N---------A----IAKEVGIGKVF-AETDPVGKANKIKELQLKGMTVA 857 (986)
Q Consensus 793 ~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a-~---------~----~a~~~gi~~~~-~~~~p~~K~~~v~~l~~~g~~v~ 857 (986)
.+++.++++.|++.|+ ..++|+...... . . +....|-+... ..=.|+-=..+++.+....++++
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~l 223 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTL 223 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEE
Confidence 6899999999999998 677876543211 0 1 11111211111 11112222234445544567899
Q ss_pred EEcCCc-ccHHHHHhCCce
Q 001981 858 MVGDGI-NDSPALVAADVG 875 (986)
Q Consensus 858 ~vGDg~-nD~~al~~A~vg 875 (986)
||||.. .|+.+.++|++-
T Consensus 224 mIGD~~~tDI~~A~~aGi~ 242 (279)
T TIGR01452 224 MVGDRLETDILFGHRCGMT 242 (279)
T ss_pred EECCChHHHHHHHHHcCCc
Confidence 999995 999999999954
No 208
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=85.41 E-value=1.3 Score=46.27 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=42.2
Q ss_pred EEECCEEEEEEEecCC-CChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc
Q 001981 776 VAIDGRVAGAFAVTDP-VKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG 831 (986)
Q Consensus 776 va~~~~~~G~i~~~d~-~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~ 831 (986)
.-.||+++. .+. ..+.++++|++|+++|++++++||++...++.+.+++|++
T Consensus 4 ~DlDGTLL~----~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 4 SDLDGTLLD----SHSYDWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EeCCCCCcC----CCCCCcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 344666552 233 4455899999999999999999999999999999999975
No 209
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=84.58 E-value=1.2 Score=37.68 Aligned_cols=55 Identities=25% Similarity=0.350 Sum_probs=36.2
Q ss_pred HHHHHHhHcCCEEEEEcCC-cccHHHHHhCCce-EEe--cCC-cHHHH---HhcCEEEeCCChhH
Q 001981 844 NKIKELQLKGMTVAMVGDG-INDSPALVAADVG-MAI--GAG-TDVAI---EAADIVLIKSSLED 900 (986)
Q Consensus 844 ~~v~~l~~~g~~v~~vGDg-~nD~~al~~A~vg-ia~--~~~-~~~~~---~~ad~vl~~~~~~~ 900 (986)
.+.+.+.....+++||||. ..|+.+.+++++- |.+ |.. .+... ..+|+|+ +++..
T Consensus 12 ~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv--~~l~e 74 (75)
T PF13242_consen 12 QALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVV--DDLKE 74 (75)
T ss_dssp HHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEE--SSGGG
T ss_pred HHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEE--CCHHh
Confidence 3445554456679999999 9999999999954 444 322 22222 4788887 44543
No 210
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=84.30 E-value=1.4 Score=44.16 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=43.2
Q ss_pred hhHHHHHHhhcCCCCeEEEEEecCCC-------------------EEEEEeCCCCCChHHHHHHHHHh
Q 001981 212 EDATFVQNFLESTQGVSQVEIDLSEH-------------------KVTVSYDPNLTGPRSIIQYLEEA 260 (986)
Q Consensus 212 ~c~~~ie~~l~~~~gV~~~~vn~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~~ 260 (986)
.|=|-+|..+.++|||.++++-++++ .+.|.|||..++.++|++..=..
T Consensus 16 GCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~~ 83 (186)
T PRK13014 16 GCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFST 83 (186)
T ss_pred CCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHHh
Confidence 68999999999999999999988765 38899999999999999877554
No 211
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=84.02 E-value=1.6 Score=44.53 Aligned_cols=50 Identities=18% Similarity=0.184 Sum_probs=43.7
Q ss_pred chhHHHHHHhhcCCCCeEEEEEecCC-------------------CEEEEEeCCCCCChHHHHHHHHHh
Q 001981 211 SEDATFVQNFLESTQGVSQVEIDLSE-------------------HKVTVSYDPNLTGPRSIIQYLEEA 260 (986)
Q Consensus 211 ~~c~~~ie~~l~~~~gV~~~~vn~~~-------------------~~~~v~~~~~~~~~~~i~~~i~~~ 260 (986)
..|=|-+|..+.+++||.+++|-++. +.+.|.|||..++.++|++..=..
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff~~ 120 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFWEN 120 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHHh
Confidence 36999999999999999999998874 458899999999999999888554
No 212
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=83.61 E-value=2 Score=42.07 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=43.4
Q ss_pred hhHHHHHHhhcCCCCeEEEEEecCCC-------------------EEEEEeCCCCCChHHHHHHHHHh
Q 001981 212 EDATFVQNFLESTQGVSQVEIDLSEH-------------------KVTVSYDPNLTGPRSIIQYLEEA 260 (986)
Q Consensus 212 ~c~~~ie~~l~~~~gV~~~~vn~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~~ 260 (986)
.|=|-+|+.+.++|||.++.+-++.+ .+.|.|||..++.++|++..=+.
T Consensus 14 GCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~i 81 (174)
T COG0225 14 GCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEI 81 (174)
T ss_pred cCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHhee
Confidence 69999999999999999999877664 67899999999999999988555
No 213
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=82.51 E-value=10 Score=49.64 Aligned_cols=136 Identities=18% Similarity=0.291 Sum_probs=76.2
Q ss_pred EEEEecCCCCh----hHHHHHHHHHhCCCCceEEEeeccCceEE--EEeCCCCCCH----HHHHHHHHHcCC--CCC---
Q 001981 52 VKFKIREIKCA----SCATSIESVLSNLNGVESAVVSPLEGQAV--VKFIPGLITA----KRIKETVEEAGF--PVD--- 116 (986)
Q Consensus 52 ~~~~v~gm~C~----~C~~~I~~~l~~~~gv~~~~v~~~~~~~~--v~~~~~~~~~----~~i~~~v~~~G~--~~~--- 116 (986)
....-.|.+-. .-...+|++++.++|+.++.-.-..+... +.++.. .+. .++.+.+...-- +.+
T Consensus 45 V~~~~pgas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~g~s~i~v~f~~~-~d~~~a~~~v~~~i~~~~~~LP~~~~~ 123 (1021)
T PF00873_consen 45 VTTSYPGASPEEVEQLVTKPLEEALSSVEGVKEIRSTSREGSSSITVEFDDG-TDIDEALQEVREKIDQIRSDLPPGVEE 123 (1021)
T ss_dssp EEEE-TTS-HHHHHHHTHHHHHHTHCSSTTEEEEEEEETTSEEEEEEEESTT-S-HHHHHHHHHHHHHHHGGGS-HHHHH
T ss_pred EEEecCcCCHHHHHHHHHHHHHHHHcCCCCeEEEEEEecCCcEEEEEEeccc-cCHHHHHHHHHHHHHhhhhhCcccccC
Confidence 33444554432 34556888999999999988765555544 445554 232 345555554421 110
Q ss_pred ----CCCcccceEEEEeecCc----cC----hhhHHHHHHHhhccCCEEEEEeecC-CCeEEEEeCCC-----CCChhHH
Q 001981 117 ----DFPEQDIAVCRLRIKGM----MC----TSCSESVERAIEMVDGVKKAVVGVA-LEEAKVHFDPN-----LTDTDHI 178 (986)
Q Consensus 117 ----~~~~~~~~~~~~~i~gm----~C----~~C~~~ie~~l~~~~gV~~~~v~~~-~~~~~v~~~~~-----~~~~~~i 178 (986)
........-..+.+.+- .- ......++..|++++||.++.+.=. .+.+.|..||. .++..++
T Consensus 124 p~i~~~~~~~~~i~~~~l~~~~~~~~~~~l~~~~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls~~~v 203 (1021)
T PF00873_consen 124 PQIFKFDPSDSPIMILALTSDDGTLDLKELRDYAEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLSLSDV 203 (1021)
T ss_dssp HEEEEEEEECCEEEEEEEEESSSSS-HHHHHHHHHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--HHHH
T ss_pred CceeeccCCCceeEEEEeccCCCCCCHHHHHHHHHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCCHHHH
Confidence 00011112233444443 11 1234568999999999999998653 34677888885 3677889
Q ss_pred HHHHHhcCCC
Q 001981 179 VEAIEDAGFG 188 (986)
Q Consensus 179 ~~~i~~~Gy~ 188 (986)
.++++.....
T Consensus 204 ~~~l~~~n~~ 213 (1021)
T PF00873_consen 204 AQALQANNVN 213 (1021)
T ss_dssp HHHHHHHSCE
T ss_pred HHHHHHhhhh
Confidence 9999876554
No 214
>PTZ00445 p36-lilke protein; Provisional
Probab=81.86 E-value=7.5 Score=39.68 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=77.7
Q ss_pred hHHHHHHHHhccCcEEEEEECCEEEE-----EEEe-------cCCCChhHHHHHHHHHHCCCeEEEEcCCCH-H------
Q 001981 759 VDDYMMKNEQLARTCVLVAIDGRVAG-----AFAV-------TDPVKPEAQIVVSSLRSMEISSIMVTGDNW-A------ 819 (986)
Q Consensus 759 ~~~~~~~~~~~g~~~i~va~~~~~~G-----~i~~-------~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~-~------ 819 (986)
.....+.+.+.|-+++++-.|.++++ ..-- --.++|+.+..+++|++.||++.++|=-.. .
T Consensus 31 ~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~ 110 (219)
T PTZ00445 31 ADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENR 110 (219)
T ss_pred HHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCC
Confidence 34455667888999999999998876 2211 122799999999999999999999994333 2
Q ss_pred --------HHHHHHHHcCC----ceEEEec------------------CcccHHH----HHHHHhHcCCEEEEEcCCccc
Q 001981 820 --------TANAIAKEVGI----GKVFAET------------------DPVGKAN----KIKELQLKGMTVAMVGDGIND 865 (986)
Q Consensus 820 --------~a~~~a~~~gi----~~~~~~~------------------~p~~K~~----~v~~l~~~g~~v~~vGDg~nD 865 (986)
.++...+..+- ..+++-- .|+.|.- +++...-..+.++++=|....
T Consensus 111 ~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~N 190 (219)
T PTZ00445 111 PRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNN 190 (219)
T ss_pred cceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHH
Confidence 35555554333 3343221 2233322 233333335679999999999
Q ss_pred HHHHHhCCce
Q 001981 866 SPALVAADVG 875 (986)
Q Consensus 866 ~~al~~A~vg 875 (986)
+.+.++.|+-
T Consensus 191 VeaA~~lGi~ 200 (219)
T PTZ00445 191 CKNALKEGYI 200 (219)
T ss_pred HHHHHHCCCE
Confidence 9999987753
No 215
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=81.79 E-value=2.9 Score=40.42 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=42.4
Q ss_pred hhHHHHHHhhcCCCCeEEEEEecCC-------------------CEEEEEeCCCCCChHHHHHHHHHh
Q 001981 212 EDATFVQNFLESTQGVSQVEIDLSE-------------------HKVTVSYDPNLTGPRSIIQYLEEA 260 (986)
Q Consensus 212 ~c~~~ie~~l~~~~gV~~~~vn~~~-------------------~~~~v~~~~~~~~~~~i~~~i~~~ 260 (986)
.|=|-+|..+.+++||.++++-+++ +.+.|.|||..++.++|++..=..
T Consensus 8 GCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~~ 75 (149)
T TIGR00401 8 GCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWEI 75 (149)
T ss_pred CCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHHh
Confidence 6899999999999999999987655 467899999999999999977544
No 216
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.84 E-value=16 Score=43.05 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=33.0
Q ss_pred CCCCeeeEEEeeCCCcCCCcEEEEcCCCcccccEEEEecc
Q 001981 445 GEGNVISEMDINTQLMQKNDIIKILPGEKVPVDGVVTDGQ 484 (986)
Q Consensus 445 r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPaDg~vl~G~ 484 (986)
||| +..++|..-|+.||||-++||+.-||.+.=++|+
T Consensus 162 RDG---hlm~lP~~LLVeGDiIa~RPGQeafan~~g~~dd 198 (1354)
T KOG4383|consen 162 RDG---HLMELPRILLVEGDIIAFRPGQEAFANCEGFDDD 198 (1354)
T ss_pred ccC---eeeecceeEEEeccEEEecCCccccccccccCCC
Confidence 789 8889999999999999999999999987666653
No 217
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=80.36 E-value=2.9 Score=40.73 Aligned_cols=85 Identities=27% Similarity=0.310 Sum_probs=58.8
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCCH----HHHHHHHHHcCCce----EEEecCcc-cHHHHHHHHhHcCCEEEEEcCCc
Q 001981 793 KPEAQIVVSSLRSMEISSIMVTGDNW----ATANAIAKEVGIGK----VFAETDPV-GKANKIKELQLKGMTVAMVGDGI 863 (986)
Q Consensus 793 ~~~~~~~i~~l~~~gi~~~~~Tgd~~----~~a~~~a~~~gi~~----~~~~~~p~-~K~~~v~~l~~~g~~v~~vGDg~ 863 (986)
++=+++.|.-=+++|-.++.+||+.. .++..+|+.+.|++ .|+.-.|. .+..-...+++++- -.+-||+-
T Consensus 116 KevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~k~~qy~Kt~~i~~~~~-~IhYGDSD 194 (237)
T COG3700 116 KEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKPKPGQYTKTQWIQDKNI-RIHYGDSD 194 (237)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCCCCcccccccHHHHhcCc-eEEecCCc
Confidence 55577788888888999999999865 45667788888853 34443331 12233444555554 46789999
Q ss_pred ccHHHHHhCCc-eEEe
Q 001981 864 NDSPALVAADV-GMAI 878 (986)
Q Consensus 864 nD~~al~~A~v-gia~ 878 (986)
||+.|.+.|++ ||.+
T Consensus 195 ~Di~AAkeaG~RgIRi 210 (237)
T COG3700 195 NDITAAKEAGARGIRI 210 (237)
T ss_pred hhhhHHHhcCccceeE
Confidence 99999999985 4544
No 218
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=78.83 E-value=4.1 Score=39.77 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=43.1
Q ss_pred chhHHHHHHhhcCCCCeEEEEEecCCC-------------------EEEEEeCCCCCChHHHHHHHHHh
Q 001981 211 SEDATFVQNFLESTQGVSQVEIDLSEH-------------------KVTVSYDPNLTGPRSIIQYLEEA 260 (986)
Q Consensus 211 ~~c~~~ie~~l~~~~gV~~~~vn~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~~ 260 (986)
..|=|-+|..+.++|||.++++-++.+ .+.|.|||..++.++|++..=+.
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~~ 75 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFRI 75 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHHh
Confidence 369999999999999999999987654 67899999999999999988666
No 219
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=78.67 E-value=32 Score=43.41 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=54.1
Q ss_pred hHHHHHHHHhccCcEEEEEECCEEEEEEEec-----CCCChhHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHcCC
Q 001981 759 VDDYMMKNEQLARTCVLVAIDGRVAGAFAVT-----DPVKPEAQIVVSSLRSM-EISSIMVTGDNWATANAIAKEVGI 830 (986)
Q Consensus 759 ~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~-----d~~~~~~~~~i~~l~~~-gi~~~~~Tgd~~~~a~~~a~~~gi 830 (986)
.......+....++.+++-+||++.....-. -.+.++..+++++|.+. +-.|+++||++......+....++
T Consensus 495 ~~~~~~~y~~a~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~l 572 (797)
T PLN03063 495 EQDVIQQYSKSNNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYNI 572 (797)
T ss_pred HHHHHHHHHhccCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCCC
Confidence 3455666777778899999999998542211 12678899999999876 778999999999988887765443
No 220
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=77.88 E-value=8 Score=40.65 Aligned_cols=115 Identities=20% Similarity=0.289 Sum_probs=68.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCc----eEEEec-----------------CcccHHH-HHH-
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIG----KVFAET-----------------DPVGKAN-KIK- 847 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~----~~~~~~-----------------~p~~K~~-~v~- 847 (986)
.+|+++.+.++.|++.++++.+.|+.-......+.++.|.- ++.++. -+-.|-+ .++
T Consensus 90 ~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~l~~ 169 (246)
T PF05822_consen 90 MLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESALED 169 (246)
T ss_dssp -B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHHHTT
T ss_pred hhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCcccccC
Confidence 57999999999999999999999998888888888888762 122211 0113332 221
Q ss_pred --HHhH--cCCEEEEEcCCcccHHHHHhC---CceEEec--CC-cH----HHHHhcCEEEeCCChhHHHHHH
Q 001981 848 --ELQL--KGMTVAMVGDGINDSPALVAA---DVGMAIG--AG-TD----VAIEAADIVLIKSSLEDVVTAI 905 (986)
Q Consensus 848 --~l~~--~g~~v~~vGDg~nD~~al~~A---~vgia~~--~~-~~----~~~~~ad~vl~~~~~~~l~~~i 905 (986)
..++ ....|+..||+..|+.|..-. +.-+.+| +. .+ .-+++-|+|+.++.--.++..|
T Consensus 170 ~~~~~~~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~yDIVlv~D~tm~v~~~i 241 (246)
T PF05822_consen 170 SPYFKQLKKRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDKVEENLEKYLEAYDIVLVDDQTMDVPNAI 241 (246)
T ss_dssp HHHHHCTTT--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SSHHHHHHHHHCCSSEEEET--B-HHHHHH
T ss_pred chHHHHhccCCcEEEecCccCChHhhcCCCccccEEEEEecccCHHHHHHHHHhcCCEEEECCCCchHHHHH
Confidence 1111 245699999999999997655 3344555 32 22 3345789999988765655544
No 221
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=77.40 E-value=14 Score=26.55 Aligned_cols=43 Identities=37% Similarity=0.611 Sum_probs=36.1
Q ss_pred eecCCCCchhHHHHHHhhcCCCCeEEEEEecCCCEEEEEeCCC
Q 001981 204 KLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPN 246 (986)
Q Consensus 204 ~v~Gm~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~ 246 (986)
.+.++.|..|...++..+...+|+.....++......+.|++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPE 45 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCC
Confidence 3678899999999999999999988888888888877777653
No 222
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=76.89 E-value=17 Score=25.99 Aligned_cols=58 Identities=36% Similarity=0.775 Sum_probs=40.5
Q ss_pred eecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCC
Q 001981 129 RIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAGF 187 (986)
Q Consensus 129 ~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy 187 (986)
.+.++.|..|...++..+...+++.....++......+.+++. .....+...+...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 60 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPE-VSPEELLEAIEDAGY 60 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCC-CCHHHHHHHHHHcCC
Confidence 3678999999999999998889988777777777766666543 234444334444443
No 223
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=76.35 E-value=15 Score=38.92 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=54.5
Q ss_pred EEEEecCCCChhHHHHHHHHHHCCCeEEEEc---CCCHHHHHHHHHH-cCCceEEEecCcccH----HHHHHHHhH--cC
Q 001981 784 GAFAVTDPVKPEAQIVVSSLRSMEISSIMVT---GDNWATANAIAKE-VGIGKVFAETDPVGK----ANKIKELQL--KG 853 (986)
Q Consensus 784 G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~T---gd~~~~a~~~a~~-~gi~~~~~~~~p~~K----~~~v~~l~~--~g 853 (986)
|++.-.+.+-+++.++|+.|+++|+++.++| |++.........+ +|++ ++|++= ....+.|++ .+
T Consensus 7 GvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~-----~~~~~iits~~~~~~~l~~~~~~ 81 (236)
T TIGR01460 7 GVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVD-----VSPDQIITSGSVTKDLLRQRFEG 81 (236)
T ss_pred CccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCC-----CCHHHeeeHHHHHHHHHHHhCCC
Confidence 4455567778899999999999999999998 5555544443444 7774 222211 112233333 35
Q ss_pred CEEEEEcCCcccHHHHHhCCc
Q 001981 854 MTVAMVGDGINDSPALVAADV 874 (986)
Q Consensus 854 ~~v~~vGDg~nD~~al~~A~v 874 (986)
++|+.+|.. .....++.+++
T Consensus 82 ~~v~v~G~~-~~~~~l~~~g~ 101 (236)
T TIGR01460 82 EKVYVIGVG-ELRESLEGLGF 101 (236)
T ss_pred CEEEEECCH-HHHHHHHHcCC
Confidence 679999964 45566776654
No 224
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=76.27 E-value=2.5 Score=44.96 Aligned_cols=81 Identities=14% Similarity=0.146 Sum_probs=50.3
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC------------ceEEEecCcccH--HHHHHHHhHc-CCEEE
Q 001981 793 KPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGI------------GKVFAETDPVGK--ANKIKELQLK-GMTVA 857 (986)
Q Consensus 793 ~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi------------~~~~~~~~p~~K--~~~v~~l~~~-g~~v~ 857 (986)
.++..++++.|+++|++. ++|+.....+.......|. +... .-.|+.. ..+.+.+... .++++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~-~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIY-SGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEec-CCCCCHHHHHHHHHHcCCCCcccEE
Confidence 589999999999999997 7787655444333333332 2211 1122211 2233444322 34799
Q ss_pred EEcCC-cccHHHHHhCCce
Q 001981 858 MVGDG-INDSPALVAADVG 875 (986)
Q Consensus 858 ~vGDg-~nD~~al~~A~vg 875 (986)
||||+ .+|..+.++|++-
T Consensus 218 ~vGD~~~~Di~~a~~~G~~ 236 (242)
T TIGR01459 218 MVGDSFYTDILGANRLGID 236 (242)
T ss_pred EECCCcHHHHHHHHHCCCe
Confidence 99999 5999999999875
No 225
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=74.86 E-value=11 Score=40.34 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=64.3
Q ss_pred EEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH---HcCCceEEEecCcccHHHHHHHHhHc---CCEEE
Q 001981 784 GAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAK---EVGIGKVFAETDPVGKANKIKELQLK---GMTVA 857 (986)
Q Consensus 784 G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~---~~gi~~~~~~~~p~~K~~~v~~l~~~---g~~v~ 857 (986)
|++...+.+-|++.++++.|++.|-++.++|..+..+-+..++ ++|+..+-.+--...-..+...|++. +++|.
T Consensus 31 GVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~ssa~~~a~ylk~~~~~~k~Vy 110 (306)
T KOG2882|consen 31 GVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIFSSAYAIADYLKKRKPFGKKVY 110 (306)
T ss_pred cceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCcccccChHHHHHHHHHHhCcCCCeEE
Confidence 7888899999999999999999999999999988877777765 56765432222122233455555433 47788
Q ss_pred EEc-CCcccHHHHHhCCceEE
Q 001981 858 MVG-DGINDSPALVAADVGMA 877 (986)
Q Consensus 858 ~vG-Dg~nD~~al~~A~vgia 877 (986)
.+| +|+++ -|+.|++-..
T Consensus 111 vig~~gi~~--eL~~aG~~~~ 129 (306)
T KOG2882|consen 111 VIGEEGIRE--ELDEAGFEYF 129 (306)
T ss_pred EecchhhhH--HHHHcCceee
Confidence 887 55665 5677775433
No 226
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=74.36 E-value=5.8 Score=39.37 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=40.7
Q ss_pred hhhHHHHHHHhhccCCEEEEEeecCCCe-------------------EEEEeCCCCCChhHHHHHHH
Q 001981 136 TSCSESVERAIEMVDGVKKAVVGVALEE-------------------AKVHFDPNLTDTDHIVEAIE 183 (986)
Q Consensus 136 ~~C~~~ie~~l~~~~gV~~~~v~~~~~~-------------------~~v~~~~~~~~~~~i~~~i~ 183 (986)
++|=+.+|..+.+++||.++.+-++.+. +.|.|||..++.++|.+..=
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~ 76 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFF 76 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHH
Confidence 4788889999999999999998776654 78999999999999887553
No 227
>PRK13748 putative mercuric reductase; Provisional
Probab=74.24 E-value=9.9 Score=46.02 Aligned_cols=67 Identities=33% Similarity=0.558 Sum_probs=54.0
Q ss_pred EEeecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCCcccccC
Q 001981 127 RLRIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAGFGADLISS 194 (986)
Q Consensus 127 ~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 194 (986)
.+.++||+|.+|...++..+...+++....+++..+...+.+++. .....+...+++.||...+...
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~-~~~~~i~~~i~~~g~~~~~~~~ 69 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVG-TSPDALTAAVAGLGYRATLADA 69 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCC-CCHHHHHHHHHHcCCeeeccCc
Confidence 466899999999999999999999999999999999888887653 4556666677888887655444
No 228
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=72.53 E-value=8.2 Score=36.26 Aligned_cols=50 Identities=6% Similarity=0.038 Sum_probs=36.1
Q ss_pred EEEEEECCEEEEE---EEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHH
Q 001981 773 CVLVAIDGRVAGA---FAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATAN 822 (986)
Q Consensus 773 ~i~va~~~~~~G~---i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~ 822 (986)
.+++-.||+++-- -...+++.+++.+++++|+++|+.++++||++.....
T Consensus 3 ~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~ 55 (126)
T TIGR01689 3 RLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYE 55 (126)
T ss_pred EEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhh
Confidence 3455556666410 0012567899999999999999999999999886544
No 229
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=72.10 E-value=5.7 Score=42.65 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=43.0
Q ss_pred chhHHHHHHhhcCCCCeEEEEEecCCC-------------------EEEEEeCCCCCChHHHHHHHHHh
Q 001981 211 SEDATFVQNFLESTQGVSQVEIDLSEH-------------------KVTVSYDPNLTGPRSIIQYLEEA 260 (986)
Q Consensus 211 ~~c~~~ie~~l~~~~gV~~~~vn~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~~ 260 (986)
..|=|-+|+.+.+++||.++++-++++ .+.|+|||..++.++|++..=+.
T Consensus 134 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~~~ 202 (283)
T PRK05550 134 GGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFFEI 202 (283)
T ss_pred cCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHhh
Confidence 369999999999999999999877654 48899999999999999877444
No 230
>PRK13748 putative mercuric reductase; Provisional
Probab=71.69 E-value=9.8 Score=46.05 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=51.3
Q ss_pred eeeecCCCCchhHHHHHHhhcCCCCeEEEEEecCCCEEEEEeCCCCCChHHHHHHHHHhcCC
Q 001981 202 HLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEEASHG 263 (986)
Q Consensus 202 ~~~v~Gm~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g~~ 263 (986)
.+.++||+|++|...++..+...+++....+++..+...+.+++. ...+++...++..||.
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~-~~~~~i~~~i~~~g~~ 63 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVG-TSPDALTAAVAGLGYR 63 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCC-CCHHHHHHHHHHcCCe
Confidence 466899999999999999999999999999999999988888753 4566666677777765
No 231
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=71.14 E-value=19 Score=37.33 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=53.0
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHH----HHHHHHHcCCceEE-----EecCcccHHHHHHHHhHcCCEEEEEcC
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWAT----ANAIAKEVGIGKVF-----AETDPVGKANKIKELQLKGMTVAMVGD 861 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~----a~~~a~~~gi~~~~-----~~~~p~~K~~~v~~l~~~g~~v~~vGD 861 (986)
.+-||+.+.++...++|..+..+|.+.... +..-.+..|+..+- ---.-..|..--+..++.-+.|+.|||
T Consensus 122 k~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk~~k~Ke~R~~~v~k~~~iVm~vGD 201 (274)
T COG2503 122 KAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKKDKKSKEVRRQAVEKDYKIVMLVGD 201 (274)
T ss_pred ccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEeeCCCcHHHHHHHHhhccceeeEecC
Confidence 356899999999999999999999887665 45556677774321 111112333333334445678999999
Q ss_pred CcccHHHH
Q 001981 862 GINDSPAL 869 (986)
Q Consensus 862 g~nD~~al 869 (986)
..+|-...
T Consensus 202 Nl~DF~d~ 209 (274)
T COG2503 202 NLDDFGDN 209 (274)
T ss_pred chhhhcch
Confidence 99986443
No 232
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=70.31 E-value=20 Score=39.91 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=57.5
Q ss_pred EEEEecCCCChhHHHHHHHHHHC----CCeEEEEcCCC---HH-HHHHHHHHcCCceEEEecCccc----HHHHHHHHhH
Q 001981 784 GAFAVTDPVKPEAQIVVSSLRSM----EISSIMVTGDN---WA-TANAIAKEVGIGKVFAETDPVG----KANKIKELQL 851 (986)
Q Consensus 784 G~i~~~d~~~~~~~~~i~~l~~~----gi~~~~~Tgd~---~~-~a~~~a~~~gi~~~~~~~~p~~----K~~~v~~l~~ 851 (986)
|++...+++-+++.++++.|+++ |+++.++|... .. .+..+.+++|++ +.+++ ...+...+++
T Consensus 9 GvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~-----~~~~~i~~s~~~~~~ll~~ 83 (321)
T TIGR01456 9 GVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD-----VSPLQVIQSHSPYKSLVNK 83 (321)
T ss_pred CceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC-----CCHHHHHhhhHHHHHHHHH
Confidence 66677888999999999999998 99999999664 33 366666888984 22222 1122222333
Q ss_pred cCCEEEEEcCCcccHHHHHhCCce
Q 001981 852 KGMTVAMVGDGINDSPALVAADVG 875 (986)
Q Consensus 852 ~g~~v~~vGDg~nD~~al~~A~vg 875 (986)
.+.+++++|.+. -...++.+++-
T Consensus 84 ~~~~v~viG~~~-~~~~l~~~G~~ 106 (321)
T TIGR01456 84 YEKRILAVGTGS-VRGVAEGYGFQ 106 (321)
T ss_pred cCCceEEEeChH-HHHHHHHcCCc
Confidence 344689999764 35566655543
No 233
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=68.80 E-value=32 Score=32.70 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=48.4
Q ss_pred CEEEEEEEecCCCChhHHHHHHHHHHCCC--eEEEEcCCC---HH---HHHHHHHHcCCceEEEecCcccHHHHHHHHhH
Q 001981 780 GRVAGAFAVTDPVKPEAQIVVSSLRSMEI--SSIMVTGDN---WA---TANAIAKEVGIGKVFAETDPVGKANKIKELQL 851 (986)
Q Consensus 780 ~~~~G~i~~~d~~~~~~~~~i~~l~~~gi--~~~~~Tgd~---~~---~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~ 851 (986)
-.++|+-++.-.-.+..+++++.|+++|+ ..+++-|-. .. ..+.-++++|++.+|..-+|- .+++..+++
T Consensus 53 adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~--~~iv~~l~~ 130 (134)
T TIGR01501 53 ADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPP--EVVIADLKK 130 (134)
T ss_pred CCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCH--HHHHHHHHH
Confidence 45677777777778889999999999987 355666631 11 124568999999999866543 345555544
No 234
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=67.26 E-value=11 Score=36.71 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=39.7
Q ss_pred hhhHHHHHHHhhccCCEEEEEeecCC--------------CeEEEEeCCCCCChhHHHHHHHh
Q 001981 136 TSCSESVERAIEMVDGVKKAVVGVAL--------------EEAKVHFDPNLTDTDHIVEAIED 184 (986)
Q Consensus 136 ~~C~~~ie~~l~~~~gV~~~~v~~~~--------------~~~~v~~~~~~~~~~~i~~~i~~ 184 (986)
++|=+-+|..+.+++||.++.+-+.. +.+.|.|||..++.++|.+..=.
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~ 70 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFE 70 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHH
Confidence 47888899999999999999885544 23778999999999998876533
No 235
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=66.65 E-value=53 Score=41.78 Aligned_cols=72 Identities=11% Similarity=0.210 Sum_probs=56.0
Q ss_pred hHHHHHHHHhccCcEEEEEECCEEEEEEEecC-----------CCChhHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHH
Q 001981 759 VDDYMMKNEQLARTCVLVAIDGRVAGAFAVTD-----------PVKPEAQIVVSSLRSM-EISSIMVTGDNWATANAIAK 826 (986)
Q Consensus 759 ~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d-----------~~~~~~~~~i~~l~~~-gi~~~~~Tgd~~~~a~~~a~ 826 (986)
.......+....++.+++.+||++..+..--+ .+.++..++++.|.+. +-.|+++||+.......+..
T Consensus 579 ~~~~~~~y~~a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg 658 (934)
T PLN03064 579 PEDAIQRYLQSNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFG 658 (934)
T ss_pred HHHHHHHHHhccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhC
Confidence 44556667777788999999999987643322 2558889999999876 67899999999999888887
Q ss_pred HcCC
Q 001981 827 EVGI 830 (986)
Q Consensus 827 ~~gi 830 (986)
.+++
T Consensus 659 ~~~L 662 (934)
T PLN03064 659 EFDM 662 (934)
T ss_pred CCCc
Confidence 6555
No 236
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=65.84 E-value=11 Score=36.50 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=43.2
Q ss_pred chhHHHHHHhhcCCCCeEEEEEecCC-------------------CEEEEEeCCCCCChHHHHHHHHHh
Q 001981 211 SEDATFVQNFLESTQGVSQVEIDLSE-------------------HKVTVSYDPNLTGPRSIIQYLEEA 260 (986)
Q Consensus 211 ~~c~~~ie~~l~~~~gV~~~~vn~~~-------------------~~~~v~~~~~~~~~~~i~~~i~~~ 260 (986)
+.|=|.+|.+..++|||...+|-++. +.+.|+|||..++-++|++..=+.
T Consensus 31 ~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~Fw~~ 99 (191)
T KOG1635|consen 31 AGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFFWSR 99 (191)
T ss_pred ccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHHHHc
Confidence 46899999999999999999988765 467899999999999999987443
No 237
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=65.35 E-value=80 Score=34.24 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=68.4
Q ss_pred EEEEEEecCCCChhHHHHHHHHHHCCCeEE--------EEcCCCHHHHHHHHHHcCCceEEEecCcccHHHHHHHHhHcC
Q 001981 782 VAGAFAVTDPVKPEAQIVVSSLRSMEISSI--------MVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKG 853 (986)
Q Consensus 782 ~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~--------~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~~g 853 (986)
-++++.-.--...+..+.++.|++..-... -.|-+++..++.+|+++.+--+.+.-...+-.++.+-.++.+
T Consensus 156 kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~ 235 (281)
T PF02401_consen 156 KVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHG 235 (281)
T ss_dssp CEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCT
T ss_pred eEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhC
Confidence 466677777778888999999998765544 347778888889988876655555555556667777788888
Q ss_pred CEEEEEcCCcccH--HHHHhC-CceEEecCCcH
Q 001981 854 MTVAMVGDGINDS--PALVAA-DVGMAIGAGTD 883 (986)
Q Consensus 854 ~~v~~vGDg~nD~--~al~~A-~vgia~~~~~~ 883 (986)
..+.+|.+ ..|+ ..|+.. .|||.-|.+++
T Consensus 236 ~~t~~Ie~-~~el~~~~l~~~~~VGItaGASTP 267 (281)
T PF02401_consen 236 KPTYHIET-ADELDPEWLKGVKKVGITAGASTP 267 (281)
T ss_dssp TCEEEESS-GGG--HHHHTT-SEEEEEE-TTS-
T ss_pred CCEEEeCC-ccccCHhHhCCCCEEEEEccCCCC
Confidence 88999986 4455 457777 48998885544
No 238
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=64.88 E-value=42 Score=33.56 Aligned_cols=126 Identities=23% Similarity=0.222 Sum_probs=77.5
Q ss_pred cCCCChhHHHHHHHH-HHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecCcccHHHHHHHHhHcCCEEEEEcCC--ccc
Q 001981 789 TDPVKPEAQIVVSSL-RSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDG--IND 865 (986)
Q Consensus 789 ~d~~~~~~~~~i~~l-~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg--~nD 865 (986)
.+..-+++.+..+++ .+.|.++++..| .++..+.+.+++..+--..+..|=.+.+...+..+.++++||.. ..|
T Consensus 15 ~~~~~e~~v~~a~~~~~~~g~dViIsRG---~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~ 91 (176)
T PF06506_consen 15 IEASLEEAVEEARQLLESEGADVIISRG---GTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPG 91 (176)
T ss_dssp EE--HHHHHHHHHHHHTTTT-SEEEEEH---HHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCC
T ss_pred EEecHHHHHHHHHHhhHhcCCeEEEECC---HHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHH
Confidence 444456778888888 788999999977 47778888888887777777777777777777677777777643 223
Q ss_pred HHHH--------------------------HhCCceEEecCC--cHHHHH-hcCEEEeCCChhHHHHHHHHHHHHHHHHH
Q 001981 866 SPAL--------------------------VAADVGMAIGAG--TDVAIE-AADIVLIKSSLEDVVTAIDLSRKTISRIR 916 (986)
Q Consensus 866 ~~al--------------------------~~A~vgia~~~~--~~~~~~-~ad~vl~~~~~~~l~~~i~~~r~~~~~i~ 916 (986)
...+ +..++.+-+|++ .+.+.+ .-..++...+-+++..++..++++.+..+
T Consensus 92 ~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~v~i~sg~esi~~Al~eA~~i~~~~~ 171 (176)
T PF06506_consen 92 LESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPGVLIESGEESIRRALEEALRIARARR 171 (176)
T ss_dssp HHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEEEESS--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHHHHHHH
Confidence 3222 223444455432 222222 33566777788999999999999988776
Q ss_pred H
Q 001981 917 L 917 (986)
Q Consensus 917 ~ 917 (986)
+
T Consensus 172 ~ 172 (176)
T PF06506_consen 172 R 172 (176)
T ss_dssp H
T ss_pred H
Confidence 5
No 239
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=64.50 E-value=39 Score=32.33 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=54.9
Q ss_pred HHhccCcEEEEEE--------------CCEEEEEEEecCCCChhHHHHHHHHHHCCC-e-EEEEcCCC------HHHHHH
Q 001981 766 NEQLARTCVLVAI--------------DGRVAGAFAVTDPVKPEAQIVVSSLRSMEI-S-SIMVTGDN------WATANA 823 (986)
Q Consensus 766 ~~~~g~~~i~va~--------------~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi-~-~~~~Tgd~------~~~a~~ 823 (986)
+...|+.++++.. +-.++|+-.+...-.+.+++.++.|++.|. . .+++-|.. +.....
T Consensus 27 lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~ 106 (137)
T PRK02261 27 LTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEK 106 (137)
T ss_pred HHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHH
Confidence 4556777777654 345788888888889999999999999966 2 34555544 556667
Q ss_pred HHHHcCCceEEEecCc
Q 001981 824 IAKEVGIGKVFAETDP 839 (986)
Q Consensus 824 ~a~~~gi~~~~~~~~p 839 (986)
.++++|++.+|..-++
T Consensus 107 ~l~~~G~~~vf~~~~~ 122 (137)
T PRK02261 107 KFKEMGFDRVFPPGTD 122 (137)
T ss_pred HHHHcCCCEEECcCCC
Confidence 8899999999975543
No 240
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=64.15 E-value=27 Score=36.13 Aligned_cols=106 Identities=16% Similarity=0.232 Sum_probs=59.9
Q ss_pred cCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCCcccccCCccccceeeeecCCCCc----------hhHHHHH
Q 001981 149 VDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAGFGADLISSGKDVNKVHLKLEGLNSS----------EDATFVQ 218 (986)
Q Consensus 149 ~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~v~Gm~c~----------~c~~~ie 218 (986)
..||..-+....++...+..++. ...+-.+.+...||+-+....- .--|.-+|+--. .-.+.+|
T Consensus 42 ~~gI~A~K~~~~~g~~~l~Ve~~--~fa~Av~iL~~~GlPr~~f~~l----~d~Fp~dgLVsSP~eEkaR~~~~~eQ~le 115 (246)
T COG4669 42 SHGINAEKKADKDGGTSLLVEES--DFAEAVEILNQNGLPRKKFTTL----GDIFPKDGLVSSPTEEKARLNYAKEQQLE 115 (246)
T ss_pred HcCCcceeeccCCCceEEEEcHH--HHHHHHHHHHhcCCCCCCCCcH----HHhCCcccccCCcHHHHHHHHHHHHHHHH
Confidence 46777777777777777765443 2233345556778865432210 001222232111 2467999
Q ss_pred HhhcCCCCeEEEEEecC--------------CCEEEEEeCCCC---CChHHHHHHHHHh
Q 001981 219 NFLESTQGVSQVEIDLS--------------EHKVTVSYDPNL---TGPRSIIQYLEEA 260 (986)
Q Consensus 219 ~~l~~~~gV~~~~vn~~--------------~~~~~v~~~~~~---~~~~~i~~~i~~~ 260 (986)
+.|++++||.+++|... +.++.|.|.|+. +-.-+|...+.+.
T Consensus 116 ~tLs~mDGVi~ArV~I~lp~~~~~g~~~~P~saSVfIky~~~~nl~~~v~~IK~LV~nS 174 (246)
T COG4669 116 QTLSKMDGVISARVHISLPEDDDEGKNALPSSASVFIKYSPDVNLSIYVSQIKRLVANS 174 (246)
T ss_pred HHHHhcCceEEEEEEEEcCCCCccCCCCCCceeEEEEEecCCCChhHhHHHHHHHHHhc
Confidence 99999999998775432 346677787653 2233444444443
No 241
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=64.01 E-value=12 Score=38.47 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=40.1
Q ss_pred hhhHHHHHHHhhccCCEEEEEeecCC-------------------CeEEEEeCCCCCChhHHHHHHH
Q 001981 136 TSCSESVERAIEMVDGVKKAVVGVAL-------------------EEAKVHFDPNLTDTDHIVEAIE 183 (986)
Q Consensus 136 ~~C~~~ie~~l~~~~gV~~~~v~~~~-------------------~~~~v~~~~~~~~~~~i~~~i~ 183 (986)
++|=+-+|..+.+++||.++.+-+.. +.+.|.|||..++.++|.+..=
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff 118 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFW 118 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHH
Confidence 47888889999999999999997773 3477899999999999887663
No 242
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=62.75 E-value=38 Score=31.88 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=48.7
Q ss_pred CCEEEEEEEecCCCChhHHHHHHHHHHCCC-eE-EEEcCCCH------HHHHHHHHHcCCceEEEecCcccHHHHHHHH
Q 001981 779 DGRVAGAFAVTDPVKPEAQIVVSSLRSMEI-SS-IMVTGDNW------ATANAIAKEVGIGKVFAETDPVGKANKIKEL 849 (986)
Q Consensus 779 ~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi-~~-~~~Tgd~~------~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l 849 (986)
+-.++|+-++.-.-.+..+++++.|+++|+ .+ +++-|-.. ...+...+++|++.+|..-+| -.+++..|
T Consensus 50 ~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~--~~~i~~~l 126 (128)
T cd02072 50 DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTP--PEEAIADL 126 (128)
T ss_pred CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCCC--HHHHHHHH
Confidence 346788888888888999999999999998 54 45555421 334567889999999975442 22344444
No 243
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=62.19 E-value=11 Score=37.94 Aligned_cols=49 Identities=20% Similarity=0.366 Sum_probs=40.1
Q ss_pred hhhHHHHHHHhhccCCEEEEEeecCCCe-------------------EEEEeCCCCCChhHHHHHHHh
Q 001981 136 TSCSESVERAIEMVDGVKKAVVGVALEE-------------------AKVHFDPNLTDTDHIVEAIED 184 (986)
Q Consensus 136 ~~C~~~ie~~l~~~~gV~~~~v~~~~~~-------------------~~v~~~~~~~~~~~i~~~i~~ 184 (986)
++|=+-+|..+.+++||.++.+-+..+. +.|.|||..++.++|.+..=+
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~ 82 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFS 82 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHH
Confidence 3677888999999999999998666553 788999999999998876533
No 244
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=61.91 E-value=52 Score=43.05 Aligned_cols=120 Identities=13% Similarity=0.240 Sum_probs=76.9
Q ss_pred HHHHHHhhccCCEEEEEeec---CCCeEEEEeCCCCCCh----hHHHHHHHhc--CCCcc-----cccCC-ccccceeee
Q 001981 140 ESVERAIEMVDGVKKAVVGV---ALEEAKVHFDPNLTDT----DHIVEAIEDA--GFGAD-----LISSG-KDVNKVHLK 204 (986)
Q Consensus 140 ~~ie~~l~~~~gV~~~~v~~---~~~~~~v~~~~~~~~~----~~i~~~i~~~--Gy~~~-----~~~~~-~~~~~~~~~ 204 (986)
..+|+++..++||.+++-.- ....+.++++++. +. .++.+.+.++ .++.. +.... ....-..+.
T Consensus 63 ~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~v~~~~~~~~~~~~~~v~~~~ 141 (1037)
T PRK10555 63 QVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGT-DPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTIA 141 (1037)
T ss_pred HHHHHHhcCCCCceEEEEEecCCCeEEEEEEEECCC-CHHHHHHHHHHHHHHHHHhCCCccccCCceEeCCCCCceEEEE
Confidence 46899999999999988643 2245677887764 33 3455555433 12211 10000 011123444
Q ss_pred ecC----CCCc---h-hHHHHHHhhcCCCCeEEEEEecCCCEEEEEeCCCC-----CChHHHHHHHHHh
Q 001981 205 LEG----LNSS---E-DATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNL-----TGPRSIIQYLEEA 260 (986)
Q Consensus 205 v~G----m~c~---~-c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~~-----~~~~~i~~~i~~~ 260 (986)
+.+ +.-. . -++.+++.|+++|||.+++++-....+.|+.||.. ++..++.+++++.
T Consensus 142 ~~~~~~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~v~~al~~~ 210 (1037)
T PRK10555 142 FVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIESQ 210 (1037)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHHHHHHHHHh
Confidence 422 2211 1 34679999999999999999876777999999865 7899999999854
No 245
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=61.82 E-value=3.3e+02 Score=35.72 Aligned_cols=122 Identities=15% Similarity=0.240 Sum_probs=74.0
Q ss_pred HHHHHHHHHhCCCCceEEEeec---cCceEEEEeCCCCC---CHHHHHHHHHHc--CCCCC--CC-----CcccceEEEE
Q 001981 64 CATSIESVLSNLNGVESAVVSP---LEGQAVVKFIPGLI---TAKRIKETVEEA--GFPVD--DF-----PEQDIAVCRL 128 (986)
Q Consensus 64 C~~~I~~~l~~~~gv~~~~v~~---~~~~~~v~~~~~~~---~~~~i~~~v~~~--G~~~~--~~-----~~~~~~~~~~ 128 (986)
-...+|++++.++|+.++.-.- ......+.++.... ...++.+.+... .++.+ .. ......-..+
T Consensus 61 Vt~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~~g~d~~~a~~~V~~~v~~~~~~LP~~v~~~~~~~~~~~~~~v~~~ 140 (1037)
T PRK10555 61 VTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTI 140 (1037)
T ss_pred HhHHHHHHhcCCCCceEEEEEecCCCeEEEEEEEECCCCHHHHHHHHHHHHHHHHHhCCCccccCCceEeCCCCCceEEE
Confidence 4556888999999999887632 22446667765531 133455555543 22211 10 0011112334
Q ss_pred eecC----ccC----hhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCC-----CChhHHHHHHHhc
Q 001981 129 RIKG----MMC----TSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNL-----TDTDHIVEAIEDA 185 (986)
Q Consensus 129 ~i~g----m~C----~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~-----~~~~~i~~~i~~~ 185 (986)
.+.+ +.- ..-++.++..|++++||.++.+.-..+.+.|..||.+ ++..++.++++..
T Consensus 141 ~~~~~~~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~v~~al~~~ 210 (1037)
T PRK10555 141 AFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIESQ 210 (1037)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHHHHHHHHHh
Confidence 4422 221 1123668899999999999999866666889988853 5778888888764
No 246
>PLN02645 phosphoglycolate phosphatase
Probab=60.87 E-value=17 Score=40.22 Aligned_cols=58 Identities=17% Similarity=0.219 Sum_probs=37.3
Q ss_pred HHHHhHcCCEEEEEcCCc-ccHHHHHhCCc---eEEecCCcHH-HH-----HhcCEEEeCCChhHHHHHH
Q 001981 846 IKELQLKGMTVAMVGDGI-NDSPALVAADV---GMAIGAGTDV-AI-----EAADIVLIKSSLEDVVTAI 905 (986)
Q Consensus 846 v~~l~~~g~~v~~vGDg~-nD~~al~~A~v---gia~~~~~~~-~~-----~~ad~vl~~~~~~~l~~~i 905 (986)
++.+....++++||||.. +|+.+.++|++ +|..|..... .. ..+|+++ +++..+.+++
T Consensus 240 ~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~--~~~~~l~~~~ 307 (311)
T PLN02645 240 ANKFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYT--SKISDFLTLK 307 (311)
T ss_pred HHHcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEE--CCHHHHHHHh
Confidence 334444467899999997 99999999994 3444533322 21 2367777 5577766544
No 247
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=58.62 E-value=2.8e+02 Score=30.37 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=69.0
Q ss_pred EEEEEEEecCCCChhHHHHHHHHHHCCCeE--------EEEcCCCHHHHHHHHHHcCCceEEEecCcccHHHHHHHHhHc
Q 001981 781 RVAGAFAVTDPVKPEAQIVVSSLRSMEISS--------IMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLK 852 (986)
Q Consensus 781 ~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~--------~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~~ 852 (986)
+-++++.-.--...+..+.++.|++..-.+ .-.|-+++..++.+|++...--+.+.-...+=.++.+-.++.
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~ 235 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEA 235 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHH
Confidence 336667766666788888888888875333 346888999999999987665555554444445566666777
Q ss_pred CCEEEEEcCC-cccHHHHHhCC-ceEEecCCcH
Q 001981 853 GMTVAMVGDG-INDSPALVAAD-VGMAIGAGTD 883 (986)
Q Consensus 853 g~~v~~vGDg-~nD~~al~~A~-vgia~~~~~~ 883 (986)
+..+..|.+- --|...|+..+ |||.-|.+++
T Consensus 236 ~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP 268 (298)
T PRK01045 236 GAPAYLIDDASEIDPEWFKGVKTVGVTAGASAP 268 (298)
T ss_pred CCCEEEECChHHCcHHHhcCCCEEEEEecCCCC
Confidence 7778888764 22445565443 8888885443
No 248
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=58.46 E-value=3.6e+02 Score=35.40 Aligned_cols=134 Identities=15% Similarity=0.207 Sum_probs=76.8
Q ss_pred EEEecCCCChh----HHHHHHHHHhCCCCceEEEeeccCce--EEEEeCCCCC---CHHHHHHHHHHcC--CCCCC--C-
Q 001981 53 KFKIREIKCAS----CATSIESVLSNLNGVESAVVSPLEGQ--AVVKFIPGLI---TAKRIKETVEEAG--FPVDD--F- 118 (986)
Q Consensus 53 ~~~v~gm~C~~----C~~~I~~~l~~~~gv~~~~v~~~~~~--~~v~~~~~~~---~~~~i~~~v~~~G--~~~~~--~- 118 (986)
...-.|.+-.- -...+|++++.++||.++.-.-..+. ..+.++.+.. ...++.+.+.+.- ...+. .
T Consensus 57 ~t~~pGas~~~vE~~Vt~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g~d~~~a~~ev~~~i~~~~~~LP~~~~~~p 136 (1040)
T PRK10503 57 VTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPP 136 (1040)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHhcCCCCccEEEEEecCCeEEEEEEEECCCChHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 34445665443 44568889999999988776543333 4555654421 1245555555431 21111 0
Q ss_pred -----CcccceEEEEeecCcc-C-h---h-hHHHHHHHhhccCCEEEEEeecCC-CeEEEEeCCCC-----CChhHHHHH
Q 001981 119 -----PEQDIAVCRLRIKGMM-C-T---S-CSESVERAIEMVDGVKKAVVGVAL-EEAKVHFDPNL-----TDTDHIVEA 181 (986)
Q Consensus 119 -----~~~~~~~~~~~i~gm~-C-~---~-C~~~ie~~l~~~~gV~~~~v~~~~-~~~~v~~~~~~-----~~~~~i~~~ 181 (986)
......-..+.+.+-. - . . -.+.++..|+++|||.++.+.-.. +.+.|..||.+ ++..++.++
T Consensus 137 ~~~~~~~~~~pv~~~~l~~~~~~~~~L~~~~~~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~~v~~a 216 (1040)
T PRK10503 137 VYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTA 216 (1040)
T ss_pred EEEEeCCCCCceEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCCHHHHHHH
Confidence 0001112334443321 1 1 1 125689999999999999887543 56889988853 567788888
Q ss_pred HHhcC
Q 001981 182 IEDAG 186 (986)
Q Consensus 182 i~~~G 186 (986)
++...
T Consensus 217 i~~~n 221 (1040)
T PRK10503 217 ITGAN 221 (1040)
T ss_pred HHHhC
Confidence 87643
No 249
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=55.80 E-value=12 Score=36.81 Aligned_cols=73 Identities=18% Similarity=0.137 Sum_probs=43.8
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCC---C-----------HHHHHHHHHHcCCceEEEecCccc---H--HHHHHHHhHc-
Q 001981 793 KPEAQIVVSSLRSMEISSIMVTGD---N-----------WATANAIAKEVGIGKVFAETDPVG---K--ANKIKELQLK- 852 (986)
Q Consensus 793 ~~~~~~~i~~l~~~gi~~~~~Tgd---~-----------~~~a~~~a~~~gi~~~~~~~~p~~---K--~~~v~~l~~~- 852 (986)
.+++.++|++|.+.|++++|+|.- . ......+.+.+|+.....-..+.+ | .-+.+.+.+.
T Consensus 31 ~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~~d~~RKP~~GM~~~~~~~~ 110 (159)
T PF08645_consen 31 PPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQVYAAPHKDPCRKPNPGMWEFALKDY 110 (159)
T ss_dssp -TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEEEECGCSSTTSTTSSHHHHHHCCCT
T ss_pred chhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEEEecCCCCCCCCCchhHHHHHHHhc
Confidence 457999999999999999999853 1 134467778888864322222221 2 1233333222
Q ss_pred -------CCEEEEEcCCccc
Q 001981 853 -------GMTVAMVGDGIND 865 (986)
Q Consensus 853 -------g~~v~~vGDg~nD 865 (986)
-+...||||..+|
T Consensus 111 ~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 111 NDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp STT--S-CCC-EEEESSCHC
T ss_pred cccccccccceEEEeccCCC
Confidence 2568999998777
No 250
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=55.72 E-value=19 Score=30.47 Aligned_cols=51 Identities=24% Similarity=0.217 Sum_probs=29.9
Q ss_pred hhHHHHHHhhcCCCCeEEEEEecCCCEEEEEeCCCCCChHHHHHHHHHhcC
Q 001981 212 EDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEEASH 262 (986)
Q Consensus 212 ~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g~ 262 (986)
.-+..+.=-|++.++|.++=+|.-+....|.||+...+.+++++.++...+
T Consensus 11 eeA~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kp 61 (88)
T PF11491_consen 11 EEAMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKP 61 (88)
T ss_dssp TTTHHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT
T ss_pred HHHHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcCh
Confidence 344556667888999999999999999999999999999999999999854
No 251
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.60 E-value=74 Score=33.36 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=69.2
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceE----EEe--------cCcccHHHHHHHHh---------
Q 001981 792 VKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKV----FAE--------TDPVGKANKIKELQ--------- 850 (986)
Q Consensus 792 ~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~----~~~--------~~p~~K~~~v~~l~--------- 850 (986)
+|+++.+....|++.+|++.+.|..-....+.+.++...-.. .+. ..-.-+..++..+.
T Consensus 139 lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~~~~ 218 (298)
T KOG3128|consen 139 LREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVLQNE 218 (298)
T ss_pred HHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCccHHhhhhhhhhcccchhhhhhHHHHHHHccchHHHHhh
Confidence 588899999999999999999997766666666665443110 000 00001122222221
Q ss_pred -------HcCCEEEEEcCCcccHHHHHhCC-ce----EEecC--CcH---HHHHhcCEEEeCCChhHHHHHH
Q 001981 851 -------LKGMTVAMVGDGINDSPALVAAD-VG----MAIGA--GTD---VAIEAADIVLIKSSLEDVVTAI 905 (986)
Q Consensus 851 -------~~g~~v~~vGDg~nD~~al~~A~-vg----ia~~~--~~~---~~~~~ad~vl~~~~~~~l~~~i 905 (986)
+.+..|...||++.|+-|...+- ++ |..++ ..+ .-++.-|+||..+..-+++.-+
T Consensus 219 s~yf~~~~~~~nVillGdsigdl~ma~gv~~~~~iLkig~l~d~vee~~~~ymd~ydIvL~~D~tldv~~s~ 290 (298)
T KOG3128|consen 219 SEYFHQLAGRVNVILLGDSIGDLHMADGVPRVGHILKIGYLNDSVEEALEKYMDSYDIVLVHDETLDVANSI 290 (298)
T ss_pred hHHHhhccCCceEEEeccccccchhhcCCcccccceeeecccchHHHHHHHHHhhcceEEecCcccchhHHH
Confidence 12567999999999988754332 22 33332 222 2335789999998877766543
No 252
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.57 E-value=39 Score=29.19 Aligned_cols=46 Identities=26% Similarity=0.505 Sum_probs=36.2
Q ss_pred ChhHHHHHHHhcCCCcccccCCccccceeeeecCCCCchhHHHHHHhhcCCCCeEEEEEecCCCEEEEEe
Q 001981 174 DTDHIVEAIEDAGFGADLISSGKDVNKVHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSY 243 (986)
Q Consensus 174 ~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~v~Gm~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~ 243 (986)
+++.|.+.++++||+++.. | +..+.+.||++.++++..++++.|.-
T Consensus 13 ~~dri~~~l~e~g~~v~~e--------------G----------D~ivas~pgis~ieik~E~kkL~v~t 58 (96)
T COG4004 13 DPDRIMRGLSELGWTVSEE--------------G----------DRIVASSPGISRIEIKPENKKLLVNT 58 (96)
T ss_pred CHHHHHHHHHHhCeeEeec--------------c----------cEEEEecCCceEEEEecccceEEEec
Confidence 6889999999999866532 1 12345679999999999999999874
No 253
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=54.41 E-value=5.8e+02 Score=33.59 Aligned_cols=123 Identities=12% Similarity=0.161 Sum_probs=74.1
Q ss_pred HHHHHHHHHhCCCCceEEEeec---cCceEEEEeCCCCC---CHHHHHHHHHHcC--CCCC-CCC------cccceEEEE
Q 001981 64 CATSIESVLSNLNGVESAVVSP---LEGQAVVKFIPGLI---TAKRIKETVEEAG--FPVD-DFP------EQDIAVCRL 128 (986)
Q Consensus 64 C~~~I~~~l~~~~gv~~~~v~~---~~~~~~v~~~~~~~---~~~~i~~~v~~~G--~~~~-~~~------~~~~~~~~~ 128 (986)
-...+|++++.++|+.++.-.- ......+.++.... ...++.+.+.... ++.+ +.+ .....-..+
T Consensus 61 Vt~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~~g~d~~~a~~~V~~~i~~~~~~LP~~~~~~~~~~~~~~~~~v~~~ 140 (1049)
T PRK15127 61 VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVV 140 (1049)
T ss_pred hhHHHHHHhcCCCCceEEEEEecCCceEEEEEEEECCCChHHHHHHHHHHHHHHHhhCCCcccCCCcEEecCCCCceEEE
Confidence 4456888999999998887543 23356677765521 1335666666542 3321 100 000111233
Q ss_pred eecC----ccC-hhh---HHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCC-----CChhHHHHHHHhcC
Q 001981 129 RIKG----MMC-TSC---SESVERAIEMVDGVKKAVVGVALEEAKVHFDPNL-----TDTDHIVEAIEDAG 186 (986)
Q Consensus 129 ~i~g----m~C-~~C---~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~-----~~~~~i~~~i~~~G 186 (986)
.+.+ +.- .-+ .+.++..|++++||.++.+.-..+.+.|..||.+ ++..++.++++...
T Consensus 141 ~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls~~~V~~~l~~~n 211 (1049)
T PRK15127 141 GVINTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVINAIKAQN 211 (1049)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCCHHHHHHHHHHhC
Confidence 3322 111 112 2468999999999999998766666889988853 57788888888653
No 254
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=53.69 E-value=68 Score=31.58 Aligned_cols=71 Identities=23% Similarity=0.325 Sum_probs=46.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecC--cccH---HHHHHHHhHcCCEEEEEc-CCcccHH
Q 001981 797 QIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETD--PVGK---ANKIKELQLKGMTVAMVG-DGINDSP 867 (986)
Q Consensus 797 ~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~--p~~K---~~~v~~l~~~g~~v~~vG-Dg~nD~~ 867 (986)
.+.=+.|++.|+.+.++.|+.......+++++|++.++..-. +.++ .++.+.+++.|-.+..+- +..-+..
T Consensus 56 ~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~~L~~~~ 132 (165)
T PF00875_consen 56 ADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFDDHTLVPPD 132 (165)
T ss_dssp HHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE--SSSS-HH
T ss_pred HHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEECCcEEEecc
Confidence 344456678899999999999999999999999999998753 3333 235556666666554443 3344433
No 255
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=53.47 E-value=1.1e+02 Score=39.66 Aligned_cols=121 Identities=19% Similarity=0.238 Sum_probs=78.7
Q ss_pred HHHHHHHhhccCCEEEEEeecC--CCeEEEEeCCCCCChh----HHHHHHHhcCC--CcccccC----C--ccccceeee
Q 001981 139 SESVERAIEMVDGVKKAVVGVA--LEEAKVHFDPNLTDTD----HIVEAIEDAGF--GADLISS----G--KDVNKVHLK 204 (986)
Q Consensus 139 ~~~ie~~l~~~~gV~~~~v~~~--~~~~~v~~~~~~~~~~----~i~~~i~~~Gy--~~~~~~~----~--~~~~~~~~~ 204 (986)
...||++++.++|+..++-.-. ...++++++.+. +++ ++.+.+.+... +.....+ . .+..-..+.
T Consensus 63 t~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~~-d~d~A~~~V~~kv~~~~~~LP~~~~~p~v~~~~~~~~~i~~~a 141 (1009)
T COG0841 63 TQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELGT-DPDTAAVQVQNKIQQAESRLPSGVQQPGVTVEKSSSNPLLILA 141 (1009)
T ss_pred hHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCCC-ChHHHHHHHHHHHHHHHhcCCCccCCCceEeccCCCceEEEEE
Confidence 3579999999999887665443 345667787764 443 56666665431 1111111 0 011223444
Q ss_pred ecC--CCCc----hhHHHHHHhhcCCCCeEEEEEecC-CCEEEEEeCCCC-----CChHHHHHHHHHh
Q 001981 205 LEG--LNSS----EDATFVQNFLESTQGVSQVEIDLS-EHKVTVSYDPNL-----TGPRSIIQYLEEA 260 (986)
Q Consensus 205 v~G--m~c~----~c~~~ie~~l~~~~gV~~~~vn~~-~~~~~v~~~~~~-----~~~~~i~~~i~~~ 260 (986)
+.+ +.-. --...+++.|+++|||.++++.-. ...+.|..||.. .++.++..+|++.
T Consensus 142 l~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~~ai~~q 209 (1009)
T COG0841 142 LTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQSAIRAQ 209 (1009)
T ss_pred EEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHHHHHHHh
Confidence 444 3311 134579999999999999998876 778889999976 6899999999864
No 256
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=53.28 E-value=31 Score=33.74 Aligned_cols=50 Identities=24% Similarity=0.381 Sum_probs=39.8
Q ss_pred hhhHHHHHHHhhccCCEEEEEeecCCC-------------------eEEEEeCCCCCChhHHHHHHHhc
Q 001981 136 TSCSESVERAIEMVDGVKKAVVGVALE-------------------EAKVHFDPNLTDTDHIVEAIEDA 185 (986)
Q Consensus 136 ~~C~~~ie~~l~~~~gV~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~~ 185 (986)
++|=+..|..+.+++||.++.+-+..+ .+.|.|||..++.++|.+..=+.
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~~ 75 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFRI 75 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHHh
Confidence 478888999999999999999866544 46788999999998888766443
No 257
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=52.94 E-value=39 Score=31.53 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=42.7
Q ss_pred EEEEEEEecCCCChhHHHHHHHHHHCCC-e-EEEEcCCCHHHHHHHHHHcCCceEEEecCc
Q 001981 781 RVAGAFAVTDPVKPEAQIVVSSLRSMEI-S-SIMVTGDNWATANAIAKEVGIGKVFAETDP 839 (986)
Q Consensus 781 ~~~G~i~~~d~~~~~~~~~i~~l~~~gi-~-~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p 839 (986)
.++++........+.+++.++.|+++|. + .+++-|.....-....++.|++.+|..-++
T Consensus 52 d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~ 112 (122)
T cd02071 52 DVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTS 112 (122)
T ss_pred CEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCC
Confidence 4556666667788899999999999977 4 355666655555666778999988865444
No 258
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=52.47 E-value=39 Score=35.19 Aligned_cols=85 Identities=20% Similarity=0.130 Sum_probs=61.8
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcC-Cc-----eEEEecC---------cccHHHHHHHHhHcC-C
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVG-IG-----KVFAETD---------PVGKANKIKELQLKG-M 854 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~g-i~-----~~~~~~~---------p~~K~~~v~~l~~~g-~ 854 (986)
.+.||+...++.|+..|+.+.++|+.+..+...-.+..+ +. .++ .-. |+-=....+.+.... +
T Consensus 92 ~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~-~d~~~v~~gKP~Pdi~l~A~~~l~~~~~~ 170 (222)
T KOG2914|consen 92 ILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVL-GDDPEVKNGKPDPDIYLKAAKRLGVPPPS 170 (222)
T ss_pred ccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCee-cCCccccCCCCCchHHHHHHHhcCCCCcc
Confidence 456799999999999999999999997777665555554 32 222 111 222244556666666 8
Q ss_pred EEEEEcCCcccHHHHHhCCceE
Q 001981 855 TVAMVGDGINDSPALVAADVGM 876 (986)
Q Consensus 855 ~v~~vGDg~nD~~al~~A~vgi 876 (986)
.++++.|..+=..|.++|+.-+
T Consensus 171 k~lVfeds~~Gv~aa~aagm~v 192 (222)
T KOG2914|consen 171 KCLVFEDSPVGVQAAKAAGMQV 192 (222)
T ss_pred ceEEECCCHHHHHHHHhcCCeE
Confidence 8999999999999999999553
No 259
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=51.97 E-value=26 Score=34.36 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=39.1
Q ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-EE
Q 001981 790 DPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGK-VF 834 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~-~~ 834 (986)
-.+||++.+.+++|++. +++++.|......|..+.+.++... +|
T Consensus 57 v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F 101 (156)
T TIGR02250 57 TKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYF 101 (156)
T ss_pred EEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCee
Confidence 34799999999999955 9999999999999999999999873 55
No 260
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=51.15 E-value=21 Score=42.16 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=42.9
Q ss_pred hhHHHHHHhhcCCCCeEEEEEecCCC------------------EEEEEeCCCCCChHHHHHHHHHh
Q 001981 212 EDATFVQNFLESTQGVSQVEIDLSEH------------------KVTVSYDPNLTGPRSIIQYLEEA 260 (986)
Q Consensus 212 ~c~~~ie~~l~~~~gV~~~~vn~~~~------------------~~~v~~~~~~~~~~~i~~~i~~~ 260 (986)
.|=|-+|..+.+++||.++++-++++ .+.|+|||..++.++|++..=..
T Consensus 206 GCFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~gtgH~E~V~V~yDp~~is~~~Ll~~f~~~ 272 (521)
T PRK14018 206 GCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSGHAETVKVTYDADKLSLDTILQYYFRV 272 (521)
T ss_pred CCchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCCCCcEEEEEEEECCCcCcHHHHHHHHHHh
Confidence 69999999999999999999887654 47899999999999999888544
No 261
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.06 E-value=71 Score=34.92 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=31.8
Q ss_pred HHHHHHhH-----cCCEEEEEcCC-cccHH---HHHhCCceEEecC----CcHHHHHhcCEEEeC
Q 001981 844 NKIKELQL-----KGMTVAMVGDG-INDSP---ALVAADVGMAIGA----GTDVAIEAADIVLIK 895 (986)
Q Consensus 844 ~~v~~l~~-----~g~~v~~vGDg-~nD~~---al~~A~vgia~~~----~~~~~~~~ad~vl~~ 895 (986)
.+++.|+. .|+.|+++|-| .-=.| .|..++..+.+-+ ........||+|+..
T Consensus 145 aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsa 209 (301)
T PRK14194 145 GCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAA 209 (301)
T ss_pred HHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEe
Confidence 34555544 38899999997 44333 4556666665542 123344578999874
No 262
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=50.62 E-value=1.1e+02 Score=31.60 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=62.6
Q ss_pred EEEEEecCCCCh--hHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec------C---------cccHH--
Q 001981 783 AGAFAVTDPVKP--EAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET------D---------PVGKA-- 843 (986)
Q Consensus 783 ~G~i~~~d~~~~--~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~------~---------p~~K~-- 843 (986)
-|.+.+++ ++| ..++.+-.|++.+ .|+.|.-...-|.++.+.+||.+.|-.+ . |..+.
T Consensus 91 ~~~LPlq~-LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE 167 (244)
T KOG3109|consen 91 HGRLPLQD-LKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFE 167 (244)
T ss_pred hccCcHhh-cCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHH
Confidence 35566677 554 4577888887765 8999999999999999999997544332 2 22221
Q ss_pred HHHHHHhHc-CCEEEEEcCCcccHHHHHhCCce
Q 001981 844 NKIKELQLK-GMTVAMVGDGINDSPALVAADVG 875 (986)
Q Consensus 844 ~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~vg 875 (986)
...+...-. .+++.++-|+.+.+.+.+.-+..
T Consensus 168 ~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~ 200 (244)
T KOG3109|consen 168 KAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLK 200 (244)
T ss_pred HHHHHhCCCCcCceEEEcCchhhHHHHHhccce
Confidence 222222222 56799999999999998887743
No 263
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=49.82 E-value=30 Score=34.08 Aligned_cols=48 Identities=27% Similarity=0.410 Sum_probs=38.5
Q ss_pred hhhHHHHHHHhhccCCEEEEEeecCCC-------------------eEEEEeCCCCCChhHHHHHHH
Q 001981 136 TSCSESVERAIEMVDGVKKAVVGVALE-------------------EAKVHFDPNLTDTDHIVEAIE 183 (986)
Q Consensus 136 ~~C~~~ie~~l~~~~gV~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~ 183 (986)
++|=+-+|+.+.+++||.++.+-.+.+ .+.|.|||..++.++|.+..=
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff 79 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFF 79 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHh
Confidence 377788899999999999988755443 367889999999999887653
No 264
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=47.42 E-value=1.2e+02 Score=32.28 Aligned_cols=123 Identities=12% Similarity=0.170 Sum_probs=70.9
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHH----HHHHHcCCceEEEe---cCcccHHHHHHHHhHcCCEEEEEcCCcccHHH-
Q 001981 797 QIVVSSLRSMEISSIMVTGDNWATAN----AIAKEVGIGKVFAE---TDPVGKANKIKELQLKGMTVAMVGDGINDSPA- 868 (986)
Q Consensus 797 ~~~i~~l~~~gi~~~~~Tgd~~~~a~----~~a~~~gi~~~~~~---~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~a- 868 (986)
.+.++...+.|.++.++ |..+..++ .+.++.|+..+-.. ..|++..++++.+.+.+..+++||=|.-=-+.
T Consensus 95 ~~ll~~~~~~~~~v~ll-G~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~PkQE~~ 173 (243)
T PRK03692 95 EALMARAGKEGTPVFLV-GGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVAMGSPKQEIF 173 (243)
T ss_pred HHHHHHHHhcCCeEEEE-CCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCCcHHHHH
Confidence 34455566778888888 44444433 33343465432111 24666677999999999999999999542222
Q ss_pred ------HHhCCceEEecCCcHHH---HHhcCEEEeCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 001981 869 ------LVAADVGMAIGAGTDVA---IEAADIVLIKSSLEDVVTAIDLSRKTISRIRLNYVW 921 (986)
Q Consensus 869 ------l~~A~vgia~~~~~~~~---~~~ad~vl~~~~~~~l~~~i~~~r~~~~~i~~n~~~ 921 (986)
.-...+.+++|.+-|.. ..-|.-...+-+++.+..++.+=|+..+.+. |..|
T Consensus 174 ~~~~~~~~~~~v~~gvGg~fD~~aG~~~RAP~w~~~~gLEWlyRl~~EP~R~~R~~~-~~~F 234 (243)
T PRK03692 174 MRDCRLVYPDALYMGVGGTYDVFTGHVKRAPKIWQNLGLEWLYRLLSQPSRIRRQLR-LLRY 234 (243)
T ss_pred HHHHHHhCCCCEEEEeCeEEEEecCCcCcCcHHHHHhChHHHHHhHhCcHHHHHHHH-HHHH
Confidence 22344556666422211 1122223334568888888888777544443 4443
No 265
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=47.17 E-value=37 Score=32.91 Aligned_cols=48 Identities=23% Similarity=0.424 Sum_probs=38.3
Q ss_pred hhhHHHHHHHhhccCCEEEEEeecCC-------------------CeEEEEeCCCCCChhHHHHHHH
Q 001981 136 TSCSESVERAIEMVDGVKKAVVGVAL-------------------EEAKVHFDPNLTDTDHIVEAIE 183 (986)
Q Consensus 136 ~~C~~~ie~~l~~~~gV~~~~v~~~~-------------------~~~~v~~~~~~~~~~~i~~~i~ 183 (986)
++|=+-+|..+.+++||.++.+-+.. +.+.|.|||..++.++|.+..=
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~ 73 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFW 73 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHH
Confidence 47888889999999999998874433 3467889999999998887553
No 266
>PF10173 Mit_KHE1: Mitochondrial K+-H+ exchange-related; InterPro: IPR018786 This entry represents a family of proteins conserved from plants to humans. Their function is not known.
Probab=46.58 E-value=74 Score=32.21 Aligned_cols=74 Identities=26% Similarity=0.496 Sum_probs=42.6
Q ss_pred HHhhcCCCCeEEE--EEecC----CCEEEEEeCCCCCChHHHHHHHHHhcCCCccccccccCCcchhhhHHHHHHHHHHH
Q 001981 218 QNFLESTQGVSQV--EIDLS----EHKVTVSYDPNLTGPRSIIQYLEEASHGPNIYHASLYTPPKRRETERLKETQMYRN 291 (986)
Q Consensus 218 e~~l~~~~gV~~~--~vn~~----~~~~~v~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (986)
|..|+++|..... +.+.. ...+.|.|.+..++++++.+.++... .. -....++
T Consensus 78 E~~LKsiP~~~~~~~~~~~~~~~~~~~i~v~yP~~~~~~~~v~~~L~~l~------------------~~---~~~~H~k 136 (187)
T PF10173_consen 78 EWALKSIPSLSHLRRRINEEHESQKKPIEVYYPGSVISPREVLRQLRKLA------------------TE---RQPYHRK 136 (187)
T ss_pred HHHHhcCCCcccccchhhhhccccccceeEecCcccCCHHHHHHHHHHHH------------------HH---hHHHHHH
Confidence 4556666654431 12221 13678888768889999988888761 00 1112223
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q 001981 292 RFFISCLFSVPVLLFSMVLPMI 313 (986)
Q Consensus 292 ~l~~~l~lal~l~l~~~~l~~~ 313 (986)
.+ +..++++|++++.++.+.+
T Consensus 137 ~~-~~~~~~~PlT~P~~LiPvi 157 (187)
T PF10173_consen 137 RM-IWCILGIPLTLPFALIPVI 157 (187)
T ss_pred HH-HHHHHhhhhhcceeeecCC
Confidence 33 3455678888887765543
No 267
>PLN02591 tryptophan synthase
Probab=45.96 E-value=3.3e+02 Score=28.99 Aligned_cols=124 Identities=16% Similarity=0.144 Sum_probs=75.1
Q ss_pred EEEecHHHHHhcCCCCChhhHHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEE-EEcCCC-
Q 001981 740 VLVGNKRLMMAFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSI-MVTGDN- 817 (986)
Q Consensus 740 ~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~-~~Tgd~- 817 (986)
++++.-..+...| +++..++..+.|-. |++. -|-+-++..+..+.+++.|+..+ ++|-..
T Consensus 82 ilm~Y~N~i~~~G------~~~F~~~~~~aGv~-----------Gvii-pDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~ 143 (250)
T PLN02591 82 VLFTYYNPILKRG------IDKFMATIKEAGVH-----------GLVV-PDLPLEETEALRAEAAKNGIELVLLTTPTTP 143 (250)
T ss_pred EEEecccHHHHhH------HHHHHHHHHHcCCC-----------EEEe-CCCCHHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 4556655554444 34455555666643 3333 35556889999999999999855 554554
Q ss_pred HHHHHHHHHHcCCceEE-Ee--------cCcccHHHHHHHHhHcCCEEEEEcCCcc---cHHHHHhC-CceEEecCC
Q 001981 818 WATANAIAKEVGIGKVF-AE--------TDPVGKANKIKELQLKGMTVAMVGDGIN---DSPALVAA-DVGMAIGAG 881 (986)
Q Consensus 818 ~~~a~~~a~~~gi~~~~-~~--------~~p~~K~~~v~~l~~~g~~v~~vGDg~n---D~~al~~A-~vgia~~~~ 881 (986)
....+.+++...=--++ ++ -.|++-.+.++.+++....-+++|=|++ |+..+... -=|+-+|++
T Consensus 144 ~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 144 TERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred HHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHH
Confidence 45667777765221222 21 1245556778888887677788999998 55554443 234555543
No 268
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=44.91 E-value=4e+02 Score=32.87 Aligned_cols=101 Identities=13% Similarity=0.089 Sum_probs=66.1
Q ss_pred EEEEEecCCCChhHHHHHHHHHHCCCeE------EEEcCCCHHHHHHHHHHcCCceEEEecCcccHHHHHHHHhHcCCEE
Q 001981 783 AGAFAVTDPVKPEAQIVVSSLRSMEISS------IMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTV 856 (986)
Q Consensus 783 ~G~i~~~d~~~~~~~~~i~~l~~~gi~~------~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v 856 (986)
++++.-..-...+..+.++.|++..-.+ .-+|-+++..++.+|++...--+.+.-...+=.++.+-.++.|..+
T Consensus 156 ~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~SsNt~~L~~i~~~~~~~~ 235 (647)
T PRK00087 156 ICVVSQTTEKQENFEKVLKELKKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSSNTTKLYEICKSNCTNT 235 (647)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCE
Confidence 4556655556677888888888764433 3467788888999998876655555444444455666666777778
Q ss_pred EEEcCC-cccHHHHHhCC-ceEEecCCcH
Q 001981 857 AMVGDG-INDSPALVAAD-VGMAIGAGTD 883 (986)
Q Consensus 857 ~~vGDg-~nD~~al~~A~-vgia~~~~~~ 883 (986)
.+|-+- --|...|+.+. |||.-|.+++
T Consensus 236 ~~ie~~~el~~~~~~~~~~vgitagaStP 264 (647)
T PRK00087 236 IHIENAGELPEEWFKGVKIIGVTAGASTP 264 (647)
T ss_pred EEECChHHCCHHHhCCCCEEEEEeccCCC
Confidence 888764 12335666554 8888885443
No 269
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=44.85 E-value=3.8e+02 Score=35.07 Aligned_cols=197 Identities=10% Similarity=0.052 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCC-----eEEEEEe--cCCCCeeeEEEeeCCCcCCCcEEEEcCCCcccc
Q 001981 404 MLISFILLGKYLEVVAKGKTSDALAKLTDLAPD-----TAHLLTL--DGEGNVISEMDINTQLMQKNDIIKILPGEKVPV 476 (986)
Q Consensus 404 ~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~-----~~~v~~~--~r~g~~~~~~~i~~~~l~~GDii~v~~Ge~IPa 476 (986)
+++++..+-.+.+.+..+++.+.++++...... ....+.. =.-| ....+...+..|.|.+.++... +-+
T Consensus 112 ~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViRdg~~~~I~~~~lv~G---Div~l~~Gd~IPaD~~il~~~~-l~V 187 (997)
T TIGR01106 112 AVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQVVVG---DLVEVKGGDRIPADLRIISAQG-CKV 187 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEeeHHHCCCC---CEEEECCCCEEeeeEEEEEccC-cEE
Confidence 334444443444445556677777776332111 1111100 0124 3456788889999998887642 445
Q ss_pred cEEEEeccce-eeccccccCCcce----ecCCCCceeeeeeecCceEEE--EEEEeCCchHHHHHHHHHHHHhh-cCChH
Q 001981 477 DGVVTDGQSY-VNESMITGEAKPI----AKGPGDKVIGGTMNENGCLQV--KATHVGSETALSQIVQLVEAAQL-ARAPV 548 (986)
Q Consensus 477 Dg~vl~G~~~-Vdes~lTGEs~pv----~k~~g~~v~aGs~~~~g~~~~--~v~~~g~~t~~~~i~~~~~~~~~-~~~~~ 548 (986)
|=-.+.|++. |.-..-.-+..|. .-..|..+..|+.. +.+.. .-+..|.- .++.+..+.... -...+
T Consensus 188 deS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~--~~V~~tG~~T~~g~i---~~~~~~~~~~~~pl~~~~ 262 (997)
T TIGR01106 188 DNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTAR--GIVVNTGDRTVMGRI---ASLASGLENGKTPIAIEI 262 (997)
T ss_pred EccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEE--EEEEEccccchhhHH---HhhhhhcccCCCcHHHHH
Confidence 6566666662 2221100011121 12357777777532 22211 11222221 122211111111 11245
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH-HHHhhccCCCCCcccccchhhHHHHHHHHhhhhhhhcccchhhhHHHHHHH
Q 001981 549 QKLADQISRFFVPMVVAAAFITWLG-WFIPGVAGLYPKHWIPKVMDEFELALQFGISVLVVACPCALGLATPTAVMV 624 (986)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~al~la~~~a~~~ 624 (986)
+++.+.+..+.+.+.+++.++.++. +.+.. .+..++...++.+..+.|.++.++...+...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~~ 324 (997)
T TIGR01106 263 EHFIHIITGVAVFLGVSFFILSLILGYTWLE---------------AVIFLIGIIVANVPEGLLATVTVCLTLTAKR 324 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---------------HHHHHHHHHhhcCCccchHHHHHHHHHHHHH
Confidence 6777777776655544444443332 11111 2334556667778888888887777776543
No 270
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=44.05 E-value=1.6e+02 Score=38.51 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=75.1
Q ss_pred HHHHHHhhccCCEEEEEeecCCCe--EEEEeCCCCCCh----hHHHHHHHhcC--CCcc----cc-c-CC-ccccceeee
Q 001981 140 ESVERAIEMVDGVKKAVVGVALEE--AKVHFDPNLTDT----DHIVEAIEDAG--FGAD----LI-S-SG-KDVNKVHLK 204 (986)
Q Consensus 140 ~~ie~~l~~~~gV~~~~v~~~~~~--~~v~~~~~~~~~----~~i~~~i~~~G--y~~~----~~-~-~~-~~~~~~~~~ 204 (986)
..+|++++.++||.+++-.-..+. +.++++++. +. .++.+.+.+.- .... +. . .+ ....-..+.
T Consensus 74 ~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g~-d~~~a~~ev~~~i~~~~~~LP~~~~~~p~~~~~~~~~~pv~~~~ 152 (1040)
T PRK10503 74 APLERQFGQMSGLKQMSSQSSGGASVITLQFQLTL-PLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPADPPIMTLA 152 (1040)
T ss_pred HHHHHHhcCCCCccEEEEEecCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHHhCCCccCCCCEEEEeCCCCCceEEEE
Confidence 579999999999999887555544 556777654 33 34555554321 1111 10 0 00 011123444
Q ss_pred ecCCCCc-----hhH-HHHHHhhcCCCCeEEEEEecC-CCEEEEEeCCCC-----CChHHHHHHHHHh
Q 001981 205 LEGLNSS-----EDA-TFVQNFLESTQGVSQVEIDLS-EHKVTVSYDPNL-----TGPRSIIQYLEEA 260 (986)
Q Consensus 205 v~Gm~c~-----~c~-~~ie~~l~~~~gV~~~~vn~~-~~~~~v~~~~~~-----~~~~~i~~~i~~~ 260 (986)
+.+-.-+ .-+ +.+++.|+++|||.++++.-. ...+.|++||.. ++++++.++++..
T Consensus 153 l~~~~~~~~~L~~~~~~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~~v~~ai~~~ 220 (1040)
T PRK10503 153 VTSTAMPMTQVEDMVETRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAITGA 220 (1040)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCCHHHHHHHHHHh
Confidence 4432111 123 579999999999999988754 478999999876 7889999999755
No 271
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=44.00 E-value=64 Score=26.49 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=39.5
Q ss_pred EEEecCCCChhHHHHHHHHHhCCCCceEEEeeccCceEEEEeCCCCCCHHHHHHHHHHcCCCC
Q 001981 53 KFKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAGFPV 115 (986)
Q Consensus 53 ~~~v~gm~C~~C~~~I~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~G~~~ 115 (986)
++.+.|+.|+.+.-.+.+++.+++.- ..+.+..++. .....+....+..||..
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~-~~~~di~~~~~~~g~~~ 54 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDP-AAVEDIPRWCEENGYEV 54 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESST-THHHHHHHHHHHHTEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCc-cHHHHHHHHHHHCCCEE
Confidence 57789999999999999999997543 2344455443 45688999999999974
No 272
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=43.93 E-value=1.8e+02 Score=37.20 Aligned_cols=105 Identities=17% Similarity=0.143 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCCCeEE----------EEEecC---CCCeeeEEEeeCCCcCCCcEEEEc
Q 001981 403 AMLISFILLGKYLEVVAKGKTSDALAKLTDLAPDTAH----------LLTLDG---EGNVISEMDINTQLMQKNDIIKIL 469 (986)
Q Consensus 403 ~~l~~~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~~----------v~~~~r---~g~~~~~~~i~~~~l~~GDii~v~ 469 (986)
+++++-..++.+.|.+++ |+.++++++....+.-.+ .....+ =| ....+..-+.+|-|.+.++
T Consensus 96 ~iv~~~~~i~~~~e~~a~-ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~~~eLv~G---DiV~l~~Gd~VPaDg~li~ 171 (867)
T TIGR01524 96 LMVLASGLLGFIQESRAE-RAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPG---DLIELAAGDIIPADARVIS 171 (867)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHhhhccCeeEEEEecccCCCCeEEEEEhhcCCCC---CEEEECCCCEEcccEEEEe
Confidence 455556678889998886 888889988766655444 111111 14 3456788888888888876
Q ss_pred CCCcccccEEEEeccce-eeccccc--cCCcce-----ecCCCCceeeeee
Q 001981 470 PGEKVPVDGVVTDGQSY-VNESMIT--GEAKPI-----AKGPGDKVIGGTM 512 (986)
Q Consensus 470 ~Ge~IPaDg~vl~G~~~-Vdes~lT--GEs~pv-----~k~~g~~v~aGs~ 512 (986)
|+-+-+|=-.+.|++. |+-..-+ .+..|. .-..|..+..|..
T Consensus 172 -g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~ 221 (867)
T TIGR01524 172 -ARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHA 221 (867)
T ss_pred -cCceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEE
Confidence 4445567666777762 3221110 011111 1357888888863
No 273
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=43.73 E-value=4.4e+02 Score=28.29 Aligned_cols=123 Identities=15% Similarity=0.209 Sum_probs=76.2
Q ss_pred EEEecHHHHHhcCCCCChhhHHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEE-EEcCC-C
Q 001981 740 VLVGNKRLMMAFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSI-MVTGD-N 817 (986)
Q Consensus 740 ~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~-~~Tgd-~ 817 (986)
++++.-..+...| +++..++..+.|-.- +.+-|-+-++..+.++.+++.|+..+ +++-. +
T Consensus 95 vlm~Y~N~i~~~G------~e~F~~~~~~aGvdg------------viipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~ 156 (263)
T CHL00200 95 VIFTYYNPVLHYG------INKFIKKISQAGVKG------------LIIPDLPYEESDYLISVCNLYNIELILLIAPTSS 156 (263)
T ss_pred EEEecccHHHHhC------HHHHHHHHHHcCCeE------------EEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 5566665555544 345556666666442 34567777899999999999999854 55544 3
Q ss_pred HHHHHHHHHHcC-CceEE-Ee--------cCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHH---hCCc-eEEecCC
Q 001981 818 WATANAIAKEVG-IGKVF-AE--------TDPVGKANKIKELQLKGMTVAMVGDGINDSPALV---AADV-GMAIGAG 881 (986)
Q Consensus 818 ~~~a~~~a~~~g-i~~~~-~~--------~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~---~A~v-gia~~~~ 881 (986)
....+.+++... . -++ ++ ..+++-.+.++.+++.-..-++||=|+|+....+ .++. |+-+|++
T Consensus 157 ~eri~~i~~~a~gF-IY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 157 KSRIQKIARAAPGC-IYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred HHHHHHHHHhCCCc-EEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHH
Confidence 567777787764 3 222 11 1234445678888876566677899999554433 3322 4556543
No 274
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=43.37 E-value=1e+02 Score=39.55 Aligned_cols=184 Identities=16% Similarity=0.148 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccCCCeE-----------EEEEecC---CCCeeeEEEeeCCCcCCCcEEEEcCCCc
Q 001981 408 FILLGKYLEVVAKGKTSDALAKLTDLAPDTA-----------HLLTLDG---EGNVISEMDINTQLMQKNDIIKILPGEK 473 (986)
Q Consensus 408 ~~~~g~~le~~~~~k~~~~l~~l~~~~p~~~-----------~v~~~~r---~g~~~~~~~i~~~~l~~GDii~v~~Ge~ 473 (986)
-.+++.+.|. ..+|+.++++++......-. ..+ ..+ =| ....+..-+..|-|.+.++. +-
T Consensus 124 ~~~i~~~qe~-~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I-~~~eLv~G---DiV~l~~Gd~IPaDg~li~g-~~ 197 (903)
T PRK15122 124 SGLLRFWQEF-RSNKAAEALKAMVRTTATVLRRGHAGAEPVRREI-PMRELVPG---DIVHLSAGDMIPADVRLIES-RD 197 (903)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhccCCceEEEECCccCCCCeEEEE-EHHHCCCC---CEEEECCCCEEeeeEEEEEc-Cc
Confidence 3344445554 44577778887755433221 112 111 14 44667888888888888763 33
Q ss_pred ccccEEEEeccc-eeecccc------------ccCCcc-----eecCCCCceeeeeeecCceEEEE----------EEEe
Q 001981 474 VPVDGVVTDGQS-YVNESMI------------TGEAKP-----IAKGPGDKVIGGTMNENGCLQVK----------ATHV 525 (986)
Q Consensus 474 IPaDg~vl~G~~-~Vdes~l------------TGEs~p-----v~k~~g~~v~aGs~~~~g~~~~~----------v~~~ 525 (986)
+-+|=-.+.|++ .|+-... .++..+ -.-..|..+..|+...-=...+. +...
T Consensus 198 l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~~gkI~~~v~~~ 277 (903)
T PRK15122 198 LFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSLAKSIVGT 277 (903)
T ss_pred eEEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccHhhHHHHHhcCC
Confidence 445655555665 2332221 122211 12456888888874321111111 1111
Q ss_pred CCchHHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCCCCcccccchhhHHHHHHHHhhh
Q 001981 526 GSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGLYPKHWIPKVMDEFELALQFGISV 605 (986)
Q Consensus 526 g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 605 (986)
-..|.+.+-. .++.+.+.+++.++++++++++.+...-|. ..+..++..+++.
T Consensus 278 ~~~t~l~~~l----------~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~-----------------~~l~~aisl~V~~ 330 (903)
T PRK15122 278 RAQTAFDRGV----------NSVSWLLIRFMLVMVPVVLLINGFTKGDWL-----------------EALLFALAVAVGL 330 (903)
T ss_pred CCCCcHHHHH----------HHHHHHHHHHHHHHHHHhhhhhhhccCCHH-----------------HHHHHHHHHHHHH
Confidence 1223222211 235677788888888888777654332221 1233456667777
Q ss_pred hhhhcccchhhhHHHHHHH
Q 001981 606 LVVACPCALGLATPTAVMV 624 (986)
Q Consensus 606 lv~~~P~al~la~~~a~~~ 624 (986)
...+.|.++.++...+...
T Consensus 331 ~Pe~Lp~~vt~~La~g~~~ 349 (903)
T PRK15122 331 TPEMLPMIVSSNLAKGAIA 349 (903)
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 7777777777777766543
No 275
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=43.37 E-value=37 Score=36.59 Aligned_cols=47 Identities=21% Similarity=0.327 Sum_probs=38.9
Q ss_pred hhhHHHHHHHhhccCCEEEEEeecCCC-------------------eEEEEeCCCCCChhHHHHHH
Q 001981 136 TSCSESVERAIEMVDGVKKAVVGVALE-------------------EAKVHFDPNLTDTDHIVEAI 182 (986)
Q Consensus 136 ~~C~~~ie~~l~~~~gV~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i 182 (986)
++|=+-+|..+.+++||.++.+-++.+ .+.|+|||..++.++|.+..
T Consensus 134 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F 199 (283)
T PRK05550 134 GGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVF 199 (283)
T ss_pred cCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHH
Confidence 478888899999999999998865543 37789999999998888765
No 276
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=42.87 E-value=1.6e+02 Score=38.59 Aligned_cols=120 Identities=12% Similarity=0.187 Sum_probs=76.5
Q ss_pred HHHHHHhhccCCEEEEEeec---CCCeEEEEeCCCCCCh----hHHHHHHHhcC--CCcccccC-----Ccc-ccceeee
Q 001981 140 ESVERAIEMVDGVKKAVVGV---ALEEAKVHFDPNLTDT----DHIVEAIEDAG--FGADLISS-----GKD-VNKVHLK 204 (986)
Q Consensus 140 ~~ie~~l~~~~gV~~~~v~~---~~~~~~v~~~~~~~~~----~~i~~~i~~~G--y~~~~~~~-----~~~-~~~~~~~ 204 (986)
..||+++..++|+.+++-.- ....+.++++++. +. .++.+.+.... ++.....+ ... ..-..+.
T Consensus 63 ~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~~g~-d~~~a~~~V~~~i~~~~~~LP~~~~~~~~~~~~~~~~~v~~~~ 141 (1049)
T PRK15127 63 QVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGT-DADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVG 141 (1049)
T ss_pred HHHHHHhcCCCCceEEEEEecCCceEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCcccCCCcEEecCCCCceEEEE
Confidence 46899999999999988543 2345778887764 33 34555565432 22110000 000 1112334
Q ss_pred ecC----CCCc---hhH-HHHHHhhcCCCCeEEEEEecCCCEEEEEeCCCC-----CChHHHHHHHHHh
Q 001981 205 LEG----LNSS---EDA-TFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNL-----TGPRSIIQYLEEA 260 (986)
Q Consensus 205 v~G----m~c~---~c~-~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~~-----~~~~~i~~~i~~~ 260 (986)
+.+ ++-. .-+ +.++..|.++|||.++++.-....+.|..||.. +++.++.++++..
T Consensus 142 l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls~~~V~~~l~~~ 210 (1049)
T PRK15127 142 VINTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVINAIKAQ 210 (1049)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCCHHHHHHHHHHh
Confidence 422 1111 112 468999999999999999877777999999876 7899999999854
No 277
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=41.88 E-value=84 Score=31.24 Aligned_cols=86 Identities=10% Similarity=0.185 Sum_probs=54.7
Q ss_pred cCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc---CCceEEE---ecCcccH------HHHHHHHhHcCCEE
Q 001981 789 TDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEV---GIGKVFA---ETDPVGK------ANKIKELQLKGMTV 856 (986)
Q Consensus 789 ~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~---gi~~~~~---~~~p~~K------~~~v~~l~~~g~~v 856 (986)
.-++.|++.++|++.++.|+++.+-|..+-..-+-+-... .+..+|+ +.+-..| .+|.+........+
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDttiG~KrE~~SY~kIa~~iGl~p~ei 180 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDTTIGKKRESQSYAKIAGDIGLPPAEI 180 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeeccccccccchhHHHHHHhcCCCchhe
Confidence 5578999999999999999999999866554322221111 1111221 2222223 23444444445779
Q ss_pred EEEcCCcccHHHHHhCCc
Q 001981 857 AMVGDGINDSPALVAADV 874 (986)
Q Consensus 857 ~~vGDg~nD~~al~~A~v 874 (986)
++..|..+...|.+.+++
T Consensus 181 lFLSDn~~EL~AA~~vGl 198 (229)
T COG4229 181 LFLSDNPEELKAAAGVGL 198 (229)
T ss_pred EEecCCHHHHHHHHhcch
Confidence 999999999888777664
No 278
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=41.76 E-value=1.5e+02 Score=38.99 Aligned_cols=121 Identities=12% Similarity=0.169 Sum_probs=74.6
Q ss_pred HHHHHHhhccCCEEEEEeecC-C--CeEEEEeCCCCCC---hhHHHHHHHhc--CCCcccccC------Cccccceeeee
Q 001981 140 ESVERAIEMVDGVKKAVVGVA-L--EEAKVHFDPNLTD---TDHIVEAIEDA--GFGADLISS------GKDVNKVHLKL 205 (986)
Q Consensus 140 ~~ie~~l~~~~gV~~~~v~~~-~--~~~~v~~~~~~~~---~~~i~~~i~~~--Gy~~~~~~~------~~~~~~~~~~v 205 (986)
..+|+++..++||..++-.-. . ..+.++++++... ..++.+.+... .++.....+ .....-..+.+
T Consensus 63 ~plE~~l~~v~gv~~i~S~s~~~g~s~i~v~f~~~~d~~~a~~~v~~~l~~~~~~LP~~~~~~~~~~~~~~~~~~~~i~l 142 (1044)
T TIGR00915 63 QVIEQQMNGIDGLRYMSSESDSDGSMTITLTFEQGTDPDIAQVQVQNKLQLATPLLPQEVQRQGVRVEKASSNFLMVIGL 142 (1044)
T ss_pred HHHHHHhcCCCCceEEEEEEcCCCeEEEEEEEECCCChHHHHHHHHHHHHHHHhhCCCcccCCCcEEeCCCCCceEEEEE
Confidence 467888899999998775432 3 4556677665421 23455555532 122110000 00111223344
Q ss_pred cCC----CCc---h-hHHHHHHhhcCCCCeEEEEEecCCCEEEEEeCCCC-----CChHHHHHHHHHh
Q 001981 206 EGL----NSS---E-DATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNL-----TGPRSIIQYLEEA 260 (986)
Q Consensus 206 ~Gm----~c~---~-c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~~-----~~~~~i~~~i~~~ 260 (986)
.+- +-. . -.+.++..|.++|||.++++.-....+.|+.||.. ++..++.++|+..
T Consensus 143 ~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~dV~~~i~~~ 210 (1044)
T TIGR00915 143 VSTDGSMTKEDLSDYIASNMVDPISRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTPADVISAIQAQ 210 (1044)
T ss_pred EcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEecCCceEEEEEECHHHHHHcCCCHHHHHHHHHHh
Confidence 331 111 1 23579999999999999999877777999999876 7899999999873
No 279
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=41.55 E-value=1.3e+02 Score=39.40 Aligned_cols=120 Identities=20% Similarity=0.270 Sum_probs=73.7
Q ss_pred HHHHHHhhccCCEEEEEeecCCC--eEEEEeCCCCCCh----hHHHHHHHhc--CCCccc-ccC-----Cc-cccceeee
Q 001981 140 ESVERAIEMVDGVKKAVVGVALE--EAKVHFDPNLTDT----DHIVEAIEDA--GFGADL-ISS-----GK-DVNKVHLK 204 (986)
Q Consensus 140 ~~ie~~l~~~~gV~~~~v~~~~~--~~~v~~~~~~~~~----~~i~~~i~~~--Gy~~~~-~~~-----~~-~~~~~~~~ 204 (986)
..+|++++.++||.+++-.-..+ .+.++|+++. +. .++.+.+.+. .++... ..+ +. ...-..+.
T Consensus 65 ~piE~~l~~i~gv~~i~S~s~~G~s~i~l~f~~~~-d~~~a~~~v~~~v~~~~~~LP~~~~~~p~~~~~~~~~~pv~~~~ 143 (1025)
T PRK10614 65 TPLERSLGRIAGVNEMTSSSSLGSTRIILQFDFDR-DINGAARDVQAAINAAQSLLPSGMPSRPTYRKANPSDAPIMILT 143 (1025)
T ss_pred HHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCccCCCCEEEecCCCccceeEEE
Confidence 56899999999999987644444 4556676653 32 3455555432 121110 000 00 01122334
Q ss_pred ecCC--CCc---hh-HHHHHHhhcCCCCeEEEEEecC-CCEEEEEeCCCC-----CChHHHHHHHHHh
Q 001981 205 LEGL--NSS---ED-ATFVQNFLESTQGVSQVEIDLS-EHKVTVSYDPNL-----TGPRSIIQYLEEA 260 (986)
Q Consensus 205 v~Gm--~c~---~c-~~~ie~~l~~~~gV~~~~vn~~-~~~~~v~~~~~~-----~~~~~i~~~i~~~ 260 (986)
+.+- .-. .- .+.+++.|+++|||.+++++-. ...+.|++||.. ++.+++.++++..
T Consensus 144 ~~~~~~~~~~L~~~~~~~l~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~dV~~al~~~ 211 (1025)
T PRK10614 144 LTSDTYSQGQLYDFASTQLAQTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRQAISNA 211 (1025)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEeCHHHHHHcCCCHHHHHHHHHHh
Confidence 4331 111 11 3579999999999999988753 357889999876 7899999999765
No 280
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=41.54 E-value=4.9e+02 Score=28.21 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=71.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHHCC--Ce------EEEEcCCCHHHHHHHHHHcCCceEEEecCcccHHHHHHHHhHcCC
Q 001981 783 AGAFAVTDPVKPEAQIVVSSLRSME--IS------SIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGM 854 (986)
Q Consensus 783 ~G~i~~~d~~~~~~~~~i~~l~~~g--i~------~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~~g~ 854 (986)
++++.-.--...+..+.++.|++.. .. +.-.|-+++..++.+|++..+--+.+.-...+=.++.+-.++.|.
T Consensus 156 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~~~~~ 235 (280)
T TIGR00216 156 LGVVSQTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSNTTRLYEIAEEHGP 235 (280)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCchHHHHHHHHHHhCC
Confidence 6777766667788888889998876 22 456788999999999999776555555544445566666777787
Q ss_pred EEEEEcCC-cccHHHHHhCC-ceEEecCCcH
Q 001981 855 TVAMVGDG-INDSPALVAAD-VGMAIGAGTD 883 (986)
Q Consensus 855 ~v~~vGDg-~nD~~al~~A~-vgia~~~~~~ 883 (986)
.+..|.+- --|...|+..+ |||.-|.+++
T Consensus 236 ~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP 266 (280)
T TIGR00216 236 PSYLIETAEELPEEWLKGVKVVGITAGASTP 266 (280)
T ss_pred CEEEECChHHCCHHHhCCCCEEEEEecCCCC
Confidence 78888764 23556676654 7888885443
No 281
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=41.47 E-value=75 Score=26.09 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=39.3
Q ss_pred EEeecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCCcc
Q 001981 127 RLRIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAGFGAD 190 (986)
Q Consensus 127 ~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 190 (986)
++.+.|..|+...-.+.+++.+++.= +.+.|..|.+ ...+.+....+..||+..
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~-~~~~di~~~~~~~g~~~~ 55 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDP-AAVEDIPRWCEENGYEVV 55 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESST-THHHHHHHHHHHHTEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCc-cHHHHHHHHHHHCCCEEE
Confidence 46788999999999999999986532 3444554443 356889999999999744
No 282
>PF15584 Imm44: Immunity protein 44
Probab=40.72 E-value=14 Score=32.04 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCcccccEEE
Q 001981 462 KNDIIKILPGEKVPVDGVV 480 (986)
Q Consensus 462 ~GDii~v~~Ge~IPaDg~v 480 (986)
+.+-.+|+.|++||||||=
T Consensus 13 ~~~~~~I~SG~~iP~~GIw 31 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIW 31 (94)
T ss_pred CCCCCEEecCCCcccCCeE
Confidence 4556789999999999986
No 283
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=40.39 E-value=37 Score=37.01 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=65.4
Q ss_pred HHHHhcC-CCCChhhHHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEc---C--CCHH
Q 001981 746 RLMMAFH-VPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVT---G--DNWA 819 (986)
Q Consensus 746 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~T---g--d~~~ 819 (986)
+++.+.| .++|+-+.....+...+.+..+|--..| .++.-..-..=+.+.+++|+++|++...+| | ....
T Consensus 141 e~L~~~G~~PLPPYI~~~~~~~d~~~YQTVYak~~G----svAAPTAGLHFt~~LL~kLk~kGv~~afvTLHVGaGTF~p 216 (348)
T COG0809 141 ELLEKYGEMPLPPYIKRKLDELDRDRYQTVYAKEPG----SVAAPTAGLHFTEELLEKLKAKGVEIAFVTLHVGAGTFRP 216 (348)
T ss_pred HHHHHcCCCCCCcccCCcccccchhhceeeeecCCC----ccccCcCCCCCCHHHHHHHHHCCceEEEEEEEeccccccc
Confidence 3555555 4577766555555555567777654433 333333333446789999999999988887 2 1110
Q ss_pred H-HHHHHHHcCCceEEEecCcccHHHHHHHHhHcCCEEEEEcCC
Q 001981 820 T-ANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMVGDG 862 (986)
Q Consensus 820 ~-a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg 862 (986)
. +..+. +--+..=|.++ |++-.++|+..++.|.+|.+||-.
T Consensus 217 V~~~~i~-eH~MH~E~~~v-~~eta~~i~~~k~~GgRIiaVGTT 258 (348)
T COG0809 217 VKVENIE-EHKMHSEYYEV-PQETADAINAAKARGGRIIAVGTT 258 (348)
T ss_pred ceecccc-ccccchhheec-CHHHHHHHHHHHHcCCeEEEEcch
Confidence 0 00000 00011112222 567788999999999999999976
No 284
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.23 E-value=1.1e+02 Score=33.22 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=29.9
Q ss_pred HHHHHHhH-----cCCEEEEEcCCcc----cHHHHHhCC--ceEEecCCc--HHHHHhcCEEEeC
Q 001981 844 NKIKELQL-----KGMTVAMVGDGIN----DSPALVAAD--VGMAIGAGT--DVAIEAADIVLIK 895 (986)
Q Consensus 844 ~~v~~l~~-----~g~~v~~vGDg~n----D~~al~~A~--vgia~~~~~--~~~~~~ad~vl~~ 895 (986)
.+++.|+. .|++|+.||.+.. =+.+|.+.+ |-++-.... ......||+++..
T Consensus 143 avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~A 207 (284)
T PRK14170 143 GIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVA 207 (284)
T ss_pred HHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEe
Confidence 44555544 4889999999843 122444444 545444332 2334579998874
No 285
>PRK09577 multidrug efflux protein; Reviewed
Probab=39.84 E-value=2.1e+02 Score=37.43 Aligned_cols=121 Identities=14% Similarity=0.176 Sum_probs=74.3
Q ss_pred HHHHHHhhccCCEEEEEeecCCC--eEEEEeCCCCCCh----hHHHHHHHhcC--CCcc-----cc-cCCccccceeeee
Q 001981 140 ESVERAIEMVDGVKKAVVGVALE--EAKVHFDPNLTDT----DHIVEAIEDAG--FGAD-----LI-SSGKDVNKVHLKL 205 (986)
Q Consensus 140 ~~ie~~l~~~~gV~~~~v~~~~~--~~~v~~~~~~~~~----~~i~~~i~~~G--y~~~-----~~-~~~~~~~~~~~~v 205 (986)
..+|+++..++|+.+++-.-..+ .+.++++++. +. .++.+.+++.- .+.. +. ..........+.+
T Consensus 63 ~plE~~L~~v~gv~~i~S~S~~G~s~I~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~~~~~~~~~~~~~~~~~~~~~l 141 (1032)
T PRK09577 63 ALIEREMNGAPGLLYTSATSSAGQASLSLTFKQGV-NADLAAVEVQNRLKTVEARLPEPVRRDGIQVEKAADNIQLIVSL 141 (1032)
T ss_pred HHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHHhCCcccccCCceEeccCCCceEEEEE
Confidence 46899999999999876544444 4556777664 33 34555555431 2111 00 0000011123333
Q ss_pred cC----CCCc---h-hHHHHHHhhcCCCCeEEEEEecCCCEEEEEeCCCC-----CChHHHHHHHHHhc
Q 001981 206 EG----LNSS---E-DATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNL-----TGPRSIIQYLEEAS 261 (986)
Q Consensus 206 ~G----m~c~---~-c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~~-----~~~~~i~~~i~~~g 261 (986)
.+ .+-. . -.+.+++.|.++|||.+++++-....+.|..||.. ++..++.++|+...
T Consensus 142 ~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V~~~l~~~n 210 (1032)
T PRK09577 142 TSDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIASAVRAHN 210 (1032)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHHHHHHHHhC
Confidence 32 1111 1 23679999999999999999887777788888765 78899999998753
No 286
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.93 E-value=1.5e+02 Score=24.45 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=37.6
Q ss_pred ChhHHHHHHHhcCCCcccccCCc---cccceeeeecCCCCchhHHHHHHhhcCCCCeEEEEE
Q 001981 174 DTDHIVEAIEDAGFGADLISSGK---DVNKVHLKLEGLNSSEDATFVQNFLESTQGVSQVEI 232 (986)
Q Consensus 174 ~~~~i~~~i~~~Gy~~~~~~~~~---~~~~~~~~v~Gm~c~~c~~~ie~~l~~~~gV~~~~v 232 (986)
...++.+.+.+.|-......... ...++.|.++--.-..--..+-+.|+++|||.++.+
T Consensus 13 ~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 13 VLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 46778888888887665443221 123355555432212366788899999999998864
No 287
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.38 E-value=1.2e+02 Score=26.34 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=35.0
Q ss_pred HHHhhcCCCCeEEEE-----EecCCCEEEEEeCCCCCChHHHHHHHHHhc
Q 001981 217 VQNFLESTQGVSQVE-----IDLSEHKVTVSYDPNLTGPRSIIQYLEEAS 261 (986)
Q Consensus 217 ie~~l~~~~gV~~~~-----vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g 261 (986)
+-+.|++++||.-++ ++..+..+.|+.....++-++|.+.|++.|
T Consensus 24 ~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~G 73 (97)
T COG1888 24 LALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELG 73 (97)
T ss_pred HHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcC
Confidence 445667777776554 555777888888888899999999999997
No 288
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=38.05 E-value=59 Score=42.58 Aligned_cols=122 Identities=22% Similarity=0.310 Sum_probs=74.9
Q ss_pred HHHHHHhhccCCEEEEEeecCCCeEE--EEeCCCCCChh----HHHHHHHhcC--CCccc-----ccCC-ccccceeeee
Q 001981 140 ESVERAIEMVDGVKKAVVGVALEEAK--VHFDPNLTDTD----HIVEAIEDAG--FGADL-----ISSG-KDVNKVHLKL 205 (986)
Q Consensus 140 ~~ie~~l~~~~gV~~~~v~~~~~~~~--v~~~~~~~~~~----~i~~~i~~~G--y~~~~-----~~~~-~~~~~~~~~v 205 (986)
..+|++++.++|+.+++-.-..+... ++++++. +.+ ++.+.+...- .+... ...+ .+..-..+.+
T Consensus 63 ~plE~~l~~v~gv~~i~S~s~~g~s~i~v~f~~~~-d~~~a~~~v~~~i~~~~~~LP~~~~~p~i~~~~~~~~~i~~~~l 141 (1021)
T PF00873_consen 63 KPLEEALSSVEGVKEIRSTSREGSSSITVEFDDGT-DIDEALQEVREKIDQIRSDLPPGVEEPQIFKFDPSDSPIMILAL 141 (1021)
T ss_dssp HHHHHTHCSSTTEEEEEEEETTSEEEEEEEESTTS--HHHHHHHHHHHHHHHGGGS-HHHHHHEEEEEEEECCEEEEEEE
T ss_pred HHHHHHHcCCCCeEEEEEEecCCcEEEEEEecccc-CHHHHHHHHHHHHHhhhhhCcccccCCceeeccCCCceeEEEEe
Confidence 57999999999999998877777654 5677764 443 3455554431 11111 0000 0112233444
Q ss_pred cCC----CCc---h-hHHHHHHhhcCCCCeEEEEEec-CCCEEEEEeCCCC-----CChHHHHHHHHHhcC
Q 001981 206 EGL----NSS---E-DATFVQNFLESTQGVSQVEIDL-SEHKVTVSYDPNL-----TGPRSIIQYLEEASH 262 (986)
Q Consensus 206 ~Gm----~c~---~-c~~~ie~~l~~~~gV~~~~vn~-~~~~~~v~~~~~~-----~~~~~i~~~i~~~g~ 262 (986)
.+- +-. . ..+.+++.|+++|||.++++.- ..+.+.|++||.. ++..++.+++++...
T Consensus 142 ~~~~~~~~~~~l~~~~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls~~~v~~~l~~~n~ 212 (1021)
T PF00873_consen 142 TSDDGTLDLKELRDYAEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLSLSDVAQALQANNV 212 (1021)
T ss_dssp EESSSSS-HHHHHHHHHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--HHHHHHHHHHHSC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCCHHHHHHHHHHhhh
Confidence 433 211 1 3357999999999999999875 6678889999876 789999999987643
No 289
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=38.02 E-value=1.7e+02 Score=29.76 Aligned_cols=70 Identities=11% Similarity=0.109 Sum_probs=40.4
Q ss_pred HHHHHHHHHHCCCeEEEEc-------------CCCHHHHHHHHHHcCCceEEEecCcc------cHHHHHHHHhHcCCEE
Q 001981 796 AQIVVSSLRSMEISSIMVT-------------GDNWATANAIAKEVGIGKVFAETDPV------GKANKIKELQLKGMTV 856 (986)
Q Consensus 796 ~~~~i~~l~~~gi~~~~~T-------------gd~~~~a~~~a~~~gi~~~~~~~~p~------~K~~~v~~l~~~g~~v 856 (986)
..-++..++++|.++.-++ +.+...++.+|+.+||..+.....+. +-.+.++.++++|-..
T Consensus 12 S~~al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~g~~~ 91 (194)
T cd01994 12 SCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEEGVDA 91 (194)
T ss_pred HHHHHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHcCCCE
Confidence 3444555555666544332 12567888899999998766654331 1123444445456667
Q ss_pred EEEcCCccc
Q 001981 857 AMVGDGIND 865 (986)
Q Consensus 857 ~~vGDg~nD 865 (986)
+..||-.-|
T Consensus 92 vv~G~i~sd 100 (194)
T cd01994 92 VVFGAILSE 100 (194)
T ss_pred EEECccccH
Confidence 777776544
No 290
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=37.75 E-value=1.5e+02 Score=28.24 Aligned_cols=89 Identities=18% Similarity=0.157 Sum_probs=60.1
Q ss_pred EEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCH----------HHHHHHHHHcCCceEEEecCcccHHHHHHHHh
Q 001981 781 RVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNW----------ATANAIAKEVGIGKVFAETDPVGKANKIKELQ 850 (986)
Q Consensus 781 ~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~----------~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~ 850 (986)
+-+.++++++.+...+-.+.+.|+++|++++-+--... .+...+.+...+-++|- .|+.-.++++..-
T Consensus 17 K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR--~~e~~~~i~~eal 94 (140)
T COG1832 17 KTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFR--RSEAAPEVAREAL 94 (140)
T ss_pred ceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEec--ChhhhHHHHHHHH
Confidence 34678899999999999999999999999998854211 11111122222224443 3666777888887
Q ss_pred HcCCEEEEEcCCcccHHHHHh
Q 001981 851 LKGMTVAMVGDGINDSPALVA 871 (986)
Q Consensus 851 ~~g~~v~~vGDg~nD~~al~~ 871 (986)
+.+-++.+.--|+-+-+|.+.
T Consensus 95 ~~~~kv~W~QlGi~n~ea~~~ 115 (140)
T COG1832 95 EKGAKVVWLQLGIRNEEAAEK 115 (140)
T ss_pred hhCCCeEEEecCcCCHHHHHH
Confidence 778888888888655555433
No 291
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=37.52 E-value=88 Score=29.69 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=46.5
Q ss_pred CCEEEEEEEecCCCChhHHHHHHHHHHCCC-eE-EEEcCCCHHHHHHHHHHcCCceEEEecC-cccHHHH
Q 001981 779 DGRVAGAFAVTDPVKPEAQIVVSSLRSMEI-SS-IMVTGDNWATANAIAKEVGIGKVFAETD-PVGKANK 845 (986)
Q Consensus 779 ~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi-~~-~~~Tgd~~~~a~~~a~~~gi~~~~~~~~-p~~K~~~ 845 (986)
+-.++|+-++...-.+..++.++.|+++|. .+ +++-|-....-..-.+++|++.+|..-+ +.+....
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~ 122 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIF 122 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHH
Confidence 345677777888888899999999999987 34 4554444444456688999998886543 3343333
No 292
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=37.43 E-value=1.1e+02 Score=33.14 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=58.7
Q ss_pred EEEEEECCEEEEEEEecCCCChhHHHHHHHHHHC----CCeEEEEcCC----CHHHHHHHHHHcCCceEEEecCcccHHH
Q 001981 773 CVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSM----EISSIMVTGD----NWATANAIAKEVGIGKVFAETDPVGKAN 844 (986)
Q Consensus 773 ~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~----gi~~~~~Tgd----~~~~a~~~a~~~gi~~~~~~~~p~~K~~ 844 (986)
...++.| +-|++...-.+-+++.++++.|.+. .|.++++|.. ....|+.+.+.||.+ ++|.|-.+
T Consensus 35 ~fgfafD--IDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~-----Vs~dqviq 107 (389)
T KOG1618|consen 35 TFGFAFD--IDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVE-----VSADQVIQ 107 (389)
T ss_pred ceeEEEe--cccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCc-----cCHHHHHh
Confidence 4555655 6688888889999999999999998 7889999953 356678899999983 33332211
Q ss_pred ---HHHHHh-HcCCEEEEEcCC
Q 001981 845 ---KIKELQ-LKGMTVAMVGDG 862 (986)
Q Consensus 845 ---~v~~l~-~~g~~v~~vGDg 862 (986)
=.+.|- -+.++|+++|+|
T Consensus 108 SHsP~r~l~~~~~k~vLv~G~~ 129 (389)
T KOG1618|consen 108 SHSPFRLLVEYHYKRVLVVGQG 129 (389)
T ss_pred hcChHHHHhhhhhceEEEecCC
Confidence 012222 345679999987
No 293
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=37.40 E-value=5.7e+02 Score=27.75 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=68.0
Q ss_pred EEEEEecCCCChhHHHHHHHHHHCCCeE------EEEcCCCHHHHHHHHHHcCCceEEEecCcccHHHHHHHHhHcCCEE
Q 001981 783 AGAFAVTDPVKPEAQIVVSSLRSMEISS------IMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTV 856 (986)
Q Consensus 783 ~G~i~~~d~~~~~~~~~i~~l~~~gi~~------~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v 856 (986)
++++.-.--...+..+.++.|++..-++ .-.|-+++..++.+|++...--+.+.-...+=.++.+-.++.+..+
T Consensus 159 v~~vsQTT~~~~~~~~iv~~l~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~rL~eia~~~~~~t 238 (281)
T PRK12360 159 ACVVAQTTIIPELWEDILNVIKLKSKELVFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSSNTQKLVKICEKNCPNT 238 (281)
T ss_pred EEEEECCCCcHHHHHHHHHHHHHhCcccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCccHHHHHHHHHHHCCCE
Confidence 5566666666788888888888765443 3467888999999999877655555544444455666666667778
Q ss_pred EEEcCC-cccHHHHHhC-CceEEecCCcH
Q 001981 857 AMVGDG-INDSPALVAA-DVGMAIGAGTD 883 (986)
Q Consensus 857 ~~vGDg-~nD~~al~~A-~vgia~~~~~~ 883 (986)
.+|.+- --|...|+.. .|||.-|.+++
T Consensus 239 ~~Ie~~~el~~~~~~~~~~VGitaGASTP 267 (281)
T PRK12360 239 FHIETADELDLEMLKDYKIIGITAGASTP 267 (281)
T ss_pred EEECChHHCCHHHhCCCCEEEEEccCCCC
Confidence 887754 3355566655 48888885443
No 294
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=36.92 E-value=43 Score=28.38 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=31.3
Q ss_pred hhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCCc
Q 001981 137 SCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAGFGA 189 (986)
Q Consensus 137 ~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~ 189 (986)
--+..++=.|.+.++|-.+-+|--.+...|.+|+...+.+++.+.+++..+++
T Consensus 11 eeA~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpEV 63 (88)
T PF11491_consen 11 EEAMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPEV 63 (88)
T ss_dssp TTTHHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-S
T ss_pred HHHHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChhh
Confidence 34556677789999999999999999999999999999999999999887665
No 295
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.18 E-value=1.8e+02 Score=25.26 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=44.5
Q ss_pred EEEEeecCccChhhHHHHHHHhhccCCEEEEEe-----ecCCCeEEEEeCCCCCChhHHHHHHHhcCCCcc
Q 001981 125 VCRLRIKGMMCTSCSESVERAIEMVDGVKKAVV-----GVALEEAKVHFDPNLTDTDHIVEAIEDAGFGAD 190 (986)
Q Consensus 125 ~~~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v-----~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 190 (986)
++.+.+-..+-.--.--+...|.+++||..+++ +..+..+.++.....++-+++.+.+++.|-..+
T Consensus 7 RlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IH 77 (97)
T COG1888 7 RLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIH 77 (97)
T ss_pred eeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeee
Confidence 344444444433334456677888888876654 556666777766677889999999999996554
No 296
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=35.86 E-value=4.4e+02 Score=28.80 Aligned_cols=92 Identities=24% Similarity=0.321 Sum_probs=56.6
Q ss_pred HHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecCcc----c
Q 001981 766 NEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPV----G 841 (986)
Q Consensus 766 ~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~----~ 841 (986)
..+.|...+++.-+..-+| +.+.-.++..++.+. +..+++-+..+.+...+|+..++. ++-.++.+ |
T Consensus 66 ~~qlGg~~~~l~~~~~Qlg----r~Esi~DTArVLsr~----~D~I~~R~~~~~~ve~lA~~s~VP-ViNgLtD~~HP~Q 136 (310)
T COG0078 66 ATQLGGHAIYLGPGDSQLG----RGESIKDTARVLSRM----VDAIMIRGFSHETLEELAKYSGVP-VINGLTDEFHPCQ 136 (310)
T ss_pred HHHcCCCeEEeCCCccccC----CCCcHHHHHHHHHhh----hheEEEecccHHHHHHHHHhCCCc-eEcccccccCcHH
Confidence 4556777777766554444 233334444444443 567888899999999999999985 44444332 2
Q ss_pred HHH----HHHHHh-HcCCEEEEEcCCcccH
Q 001981 842 KAN----KIKELQ-LKGMTVAMVGDGINDS 866 (986)
Q Consensus 842 K~~----~v~~l~-~~g~~v~~vGDg~nD~ 866 (986)
-+. +.+... -+|.+++++|||-|=+
T Consensus 137 ~LADl~Ti~E~~g~l~g~k~a~vGDgNNv~ 166 (310)
T COG0078 137 ALADLMTIKEHFGSLKGLKLAYVGDGNNVA 166 (310)
T ss_pred HHHHHHHHHHhcCcccCcEEEEEcCcchHH
Confidence 222 222222 1468999999995533
No 297
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=35.76 E-value=3.9e+02 Score=32.05 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCC-CHHHHHHHHHHcCCce-EEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHh
Q 001981 794 PEAQIVVSSLRSMEISSIMVTGD-NWATANAIAKEVGIGK-VFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVA 871 (986)
Q Consensus 794 ~~~~~~i~~l~~~gi~~~~~Tgd-~~~~a~~~a~~~gi~~-~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~ 871 (986)
-|+.+++...++.+-++.+++=. ....++.+++-++++- .+.-.++++=...++.++++|.. +.|||++- .....+
T Consensus 94 ~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~~G~~-~vvG~~~~-~~~A~~ 171 (538)
T PRK15424 94 FDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKANGIE-AVVGAGLI-TDLAEE 171 (538)
T ss_pred hHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCC-EEEcCchH-HHHHHH
Confidence 45777777778877788888744 4667778888888863 44445677888899999999975 56799755 344444
Q ss_pred CC
Q 001981 872 AD 873 (986)
Q Consensus 872 A~ 873 (986)
++
T Consensus 172 ~g 173 (538)
T PRK15424 172 AG 173 (538)
T ss_pred hC
Confidence 44
No 298
>COG4420 Predicted membrane protein [Function unknown]
Probab=35.38 E-value=1.5e+02 Score=29.65 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=27.8
Q ss_pred hhcCChHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 001981 542 QLARAPVQKLADQISRFFV-PMVVAAAFITWLGWFIPGVAGLYPKHWIP 589 (986)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 589 (986)
+...+--.+.+|+++.++. +.+++..++.+++|.+..........|.+
T Consensus 38 ~~~~t~gdR~ad~ia~f~Gsw~fil~~~~~ll~Wi~lNl~~~~~~~wDp 86 (191)
T COG4420 38 EDGETFGDRVADKIARFGGSWAFILTFTLLLLLWIVLNLFLVPGLAWDP 86 (191)
T ss_pred hcccchhhhHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhhcCCcCCC
Confidence 3445556789999998774 34444455556667665433333244543
No 299
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=34.90 E-value=2.7e+02 Score=36.61 Aligned_cols=122 Identities=11% Similarity=0.159 Sum_probs=71.7
Q ss_pred HHHHHHHHHhCCCCceEEEeec---cCceEEEEeCCCCC---CHHHHHHHHHHc--CCCCC--CC-----CcccceEEEE
Q 001981 64 CATSIESVLSNLNGVESAVVSP---LEGQAVVKFIPGLI---TAKRIKETVEEA--GFPVD--DF-----PEQDIAVCRL 128 (986)
Q Consensus 64 C~~~I~~~l~~~~gv~~~~v~~---~~~~~~v~~~~~~~---~~~~i~~~v~~~--G~~~~--~~-----~~~~~~~~~~ 128 (986)
-...+|++++.++|+.++.-.- ......+.++++.. ...++.+.+... .++.. .. ......-..+
T Consensus 61 vt~plE~~l~~v~gv~~i~S~s~~~g~s~i~v~f~~~~d~~~a~~~v~~~l~~~~~~LP~~~~~~~~~~~~~~~~~~~~i 140 (1044)
T TIGR00915 61 VTQVIEQQMNGIDGLRYMSSESDSDGSMTITLTFEQGTDPDIAQVQVQNKLQLATPLLPQEVQRQGVRVEKASSNFLMVI 140 (1044)
T ss_pred HHHHHHHHhcCCCCceEEEEEEcCCCeEEEEEEEECCCChHHHHHHHHHHHHHHHhhCCCcccCCCcEEeCCCCCceEEE
Confidence 3445678889999998776532 23455566654421 124455555543 22211 00 0001112233
Q ss_pred eecCc----cCh----hhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCC-----CChhHHHHHHHhc
Q 001981 129 RIKGM----MCT----SCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNL-----TDTDHIVEAIEDA 185 (986)
Q Consensus 129 ~i~gm----~C~----~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~-----~~~~~i~~~i~~~ 185 (986)
.+.+- .-. .=...++..|++++||.++.+.-..+.+.|+.||.+ ++..++.++++..
T Consensus 141 ~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~dV~~~i~~~ 210 (1044)
T TIGR00915 141 GLVSTDGSMTKEDLSDYIASNMVDPISRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTPADVISAIQAQ 210 (1044)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEecCCceEEEEEECHHHHHHcCCCHHHHHHHHHHh
Confidence 33331 111 122568999999999999999877667889998863 6778888888864
No 300
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=34.68 E-value=3.4e+02 Score=28.99 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=64.5
Q ss_pred HHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEE-EEcCCC-HHHHHHHHHHcC-CceEEEe
Q 001981 760 DDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSI-MVTGDN-WATANAIAKEVG-IGKVFAE 836 (986)
Q Consensus 760 ~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~-~~Tgd~-~~~a~~~a~~~g-i~~~~~~ 836 (986)
++..++..+.|-.. +.+-|.+-++..+.++.+++.|++.+ +++-.. ....+.+++... ..-+.+.
T Consensus 105 e~f~~~~~~aGvdg------------viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~ 172 (256)
T TIGR00262 105 EEFYAKCKEVGVDG------------VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSR 172 (256)
T ss_pred HHHHHHHHHcCCCE------------EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEEC
Confidence 34455566666442 23346667889999999999999955 666544 456667777664 3222111
Q ss_pred -----c---CcccHHHHHHHHhHcCCEEEEEcCCcc---cHHHHHh--CCceEEecCC
Q 001981 837 -----T---DPVGKANKIKELQLKGMTVAMVGDGIN---DSPALVA--ADVGMAIGAG 881 (986)
Q Consensus 837 -----~---~p~~K~~~v~~l~~~g~~v~~vGDg~n---D~~al~~--A~vgia~~~~ 881 (986)
. .+.+-.+.++.+++....-+++|-|++ |+..+.. || |+-+|++
T Consensus 173 ~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GAD-gvVvGSa 229 (256)
T TIGR00262 173 AGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGAD-GVIVGSA 229 (256)
T ss_pred CCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCC-EEEECHH
Confidence 1 123345677777765444577899988 4444333 33 4555543
No 301
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.64 E-value=1.5e+02 Score=32.20 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=26.2
Q ss_pred cCCEEEEEcCCcc----cHHHHHh--CCceEEecCCcH--HHHHhcCEEEeC
Q 001981 852 KGMTVAMVGDGIN----DSPALVA--ADVGMAIGAGTD--VAIEAADIVLIK 895 (986)
Q Consensus 852 ~g~~v~~vGDg~n----D~~al~~--A~vgia~~~~~~--~~~~~ad~vl~~ 895 (986)
.|++|+.||.|.. =+.+|.. |.|-++-....+ .....||+++..
T Consensus 156 ~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~A 207 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVG 207 (285)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEe
Confidence 3899999999822 1223433 445554443333 244689999874
No 302
>COG4996 Predicted phosphatase [General function prediction only]
Probab=33.87 E-value=76 Score=29.68 Aligned_cols=72 Identities=11% Similarity=0.088 Sum_probs=54.3
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec--Ccc-cHH----HHHHHHhHc------CCEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET--DPV-GKA----NKIKELQLK------GMTVA 857 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~--~p~-~K~----~~v~~l~~~------g~~v~ 857 (986)
.+++++++.++.+|+.|.-+..+|=.....|....+.++++.+|-=. .|. -|. ++++.++.+ ...++
T Consensus 41 ~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Iv 120 (164)
T COG4996 41 HLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIV 120 (164)
T ss_pred EEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEecCCChhHHHHHHHHHHHHHhhccccCcceEE
Confidence 46899999999999999999999999999999999999998877432 332 232 344444432 34577
Q ss_pred EEcCC
Q 001981 858 MVGDG 862 (986)
Q Consensus 858 ~vGDg 862 (986)
++-|.
T Consensus 121 y~DDR 125 (164)
T COG4996 121 YLDDR 125 (164)
T ss_pred EEecc
Confidence 77775
No 303
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.88 E-value=1.7e+02 Score=31.75 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=26.4
Q ss_pred cCCEEEEEcCCcc----cHHHHHh--CCceEEecCCcH--HHHHhcCEEEeC
Q 001981 852 KGMTVAMVGDGIN----DSPALVA--ADVGMAIGAGTD--VAIEAADIVLIK 895 (986)
Q Consensus 852 ~g~~v~~vGDg~n----D~~al~~--A~vgia~~~~~~--~~~~~ad~vl~~ 895 (986)
.|++|+.+|.|.. =+.+|.. |.|-+.-....+ .....||+++..
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsA 208 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSA 208 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEEC
Confidence 3789999999851 1223433 445555443322 344689999875
No 304
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.86 E-value=1.6e+02 Score=32.26 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=31.1
Q ss_pred HHHHHHhH-----cCCEEEEEcCC-cccH---HHHHhCCceEEecC----CcHHHHHhcCEEEeC
Q 001981 844 NKIKELQL-----KGMTVAMVGDG-INDS---PALVAADVGMAIGA----GTDVAIEAADIVLIK 895 (986)
Q Consensus 844 ~~v~~l~~-----~g~~v~~vGDg-~nD~---~al~~A~vgia~~~----~~~~~~~~ad~vl~~ 895 (986)
.+++.|+. .|++|+++|.+ .-=. ..|..++..+.+-+ ..+.....||+++..
T Consensus 144 ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 144 GCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAA 208 (296)
T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEe
Confidence 44555544 48899999954 3222 34556676665542 233445578998874
No 305
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=32.64 E-value=5.3e+02 Score=30.85 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCC-CHHHHHHHHHHcCCce-EEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHh
Q 001981 794 PEAQIVVSSLRSMEISSIMVTGD-NWATANAIAKEVGIGK-VFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVA 871 (986)
Q Consensus 794 ~~~~~~i~~l~~~gi~~~~~Tgd-~~~~a~~~a~~~gi~~-~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~ 871 (986)
-|...++...++.+-++.+++=. ....++.++.-++++- .+.-.++++=...++.++++|.. +.|||++- ....++
T Consensus 84 ~Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~-~viG~~~~-~~~A~~ 161 (526)
T TIGR02329 84 FDVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIG-AVVGAGLI-TDLAEQ 161 (526)
T ss_pred hhHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCC-EEECChHH-HHHHHH
Confidence 45777787888877788877743 4567888899999874 44445677778899999999975 56799854 334455
Q ss_pred CCceEEecCCcHHHHHhcCEEEeCCChhHHHHHHHHHHHHHHH
Q 001981 872 ADVGMAIGAGTDVAIEAADIVLIKSSLEDVVTAIDLSRKTISR 914 (986)
Q Consensus 872 A~vgia~~~~~~~~~~~ad~vl~~~~~~~l~~~i~~~r~~~~~ 914 (986)
+++- .++..+ .+.|..+++.+.++.+.
T Consensus 162 ~gl~---------------~ili~s-~esi~~a~~~A~~~~~~ 188 (526)
T TIGR02329 162 AGLH---------------GVFLYS-ADSVRQAFDDALDVARA 188 (526)
T ss_pred cCCc---------------eEEEec-HHHHHHHHHHHHHHHHH
Confidence 5542 223322 26666666666655443
No 306
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.08 E-value=1.6e+02 Score=31.95 Aligned_cols=44 Identities=18% Similarity=0.300 Sum_probs=26.6
Q ss_pred cCCEEEEEcCCcc----cHHHHHhCCceEEec--CCcH--HHHHhcCEEEeC
Q 001981 852 KGMTVAMVGDGIN----DSPALVAADVGMAIG--AGTD--VAIEAADIVLIK 895 (986)
Q Consensus 852 ~g~~v~~vGDg~n----D~~al~~A~vgia~~--~~~~--~~~~~ad~vl~~ 895 (986)
.|++|+.||.+.. =+.+|.+.+..+.+. ...+ .....||+++..
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIsA 208 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVA 208 (278)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEc
Confidence 4899999999843 123455555444444 2222 234579999874
No 307
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=31.94 E-value=5.5e+02 Score=27.15 Aligned_cols=86 Identities=16% Similarity=0.232 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCC--CHHHHHHHHHHcCCceEEEecC-------cccHHHHHHHHhHcC-CEEEEEcCCc
Q 001981 794 PEAQIVVSSLRSMEISSIMVTGD--NWATANAIAKEVGIGKVFAETD-------PVGKANKIKELQLKG-MTVAMVGDGI 863 (986)
Q Consensus 794 ~~~~~~i~~l~~~gi~~~~~Tgd--~~~~a~~~a~~~gi~~~~~~~~-------p~~K~~~v~~l~~~g-~~v~~vGDg~ 863 (986)
++..+.++.+++.|++++++-.. +....+.+++...---++ .+. +.+-.+.++.+++.. +....+|-|+
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI 194 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGL 194 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCc
Confidence 67889999999999997666443 456667777765322222 222 223334555555443 2356788888
Q ss_pred ---ccHHHHHhCCc-eEEecC
Q 001981 864 ---NDSPALVAADV-GMAIGA 880 (986)
Q Consensus 864 ---nD~~al~~A~v-gia~~~ 880 (986)
+|+..+..++. |+-+|+
T Consensus 195 ~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 195 DSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred CCHHHHHHHHHcCCCEEEECH
Confidence 35555544443 455553
No 308
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.67 E-value=1.5e+02 Score=32.16 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=30.8
Q ss_pred HHHHHHhH-----cCCEEEEEcCCcc----cHHHHHhCCceEEec--CCcH--HHHHhcCEEEeC
Q 001981 844 NKIKELQL-----KGMTVAMVGDGIN----DSPALVAADVGMAIG--AGTD--VAIEAADIVLIK 895 (986)
Q Consensus 844 ~~v~~l~~-----~g~~v~~vGDg~n----D~~al~~A~vgia~~--~~~~--~~~~~ad~vl~~ 895 (986)
.+++.|+. .|++|+.+|.|.. =+.+|...+..+.+. ...+ .....||+++..
T Consensus 144 aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~a 208 (285)
T PRK14189 144 GVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAA 208 (285)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEc
Confidence 45555554 4789999999854 123444555444433 2222 345689999875
No 309
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=31.59 E-value=2.4e+02 Score=29.86 Aligned_cols=78 Identities=19% Similarity=0.140 Sum_probs=49.7
Q ss_pred cCCCChhHHHHHHHHHHCCCeEEE-EcCC-CHHHHHHHHH-HcCCceEEE------ecC--cccHHHHHHHHhHcCCEEE
Q 001981 789 TDPVKPEAQIVVSSLRSMEISSIM-VTGD-NWATANAIAK-EVGIGKVFA------ETD--PVGKANKIKELQLKGMTVA 857 (986)
Q Consensus 789 ~d~~~~~~~~~i~~l~~~gi~~~~-~Tgd-~~~~a~~~a~-~~gi~~~~~------~~~--p~~K~~~v~~l~~~g~~v~ 857 (986)
-|-.-++..+.++.++++|++.++ ++-. +....+.+++ ..|.--+.+ .-+ +.+-.+.++.+++....-.
T Consensus 111 pDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI 190 (242)
T cd04724 111 PDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPI 190 (242)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcE
Confidence 354456888999999999998665 5433 3556677776 555532222 111 2334466777777656677
Q ss_pred EEcCCcccH
Q 001981 858 MVGDGINDS 866 (986)
Q Consensus 858 ~vGDg~nD~ 866 (986)
++|-|+|+.
T Consensus 191 ~vggGI~~~ 199 (242)
T cd04724 191 AVGFGISTP 199 (242)
T ss_pred EEEccCCCH
Confidence 889999844
No 310
>KOG4539 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.09 E-value=26 Score=35.37 Aligned_cols=73 Identities=21% Similarity=0.506 Sum_probs=41.4
Q ss_pred HhhcCCCCeEEEEEecCCCEEEEEeCCCCCChHHHHHHHHHhcCCCccccccccCCcchhhhHHHHHHHHHHHHHHHHHH
Q 001981 219 NFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEEASHGPNIYHASLYTPPKRRETERLKETQMYRNRFFISCL 298 (986)
Q Consensus 219 ~~l~~~~gV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 298 (986)
..|..++-|....-.-..+.+.|+|.|+. +.+.++..++..- ++..-+.++.....+
T Consensus 99 nfL~sI~~vKklnDtE~~q~l~V~yPP~l-~s~~~lr~l~~~~----------------------q~g~i~Hkkylvg~v 155 (274)
T KOG4539|consen 99 NFLKSISKVKKLNDTEEVQSLQVTYPPSL-DSRLVLRRLRHIA----------------------QSGTILHKKYLVGSV 155 (274)
T ss_pred hHHHhccccccccchhhcceeEEEcCCCC-ChHHHHHHHHHHH----------------------hhcchhhhheeeeee
Confidence 33444444443333337788999998874 4577777776651 111112233344566
Q ss_pred HHHHHHHHHhcccccc
Q 001981 299 FSVPVLLFSMVLPMIP 314 (986)
Q Consensus 299 lal~l~l~~~~l~~~~ 314 (986)
+++|+.++.++++.++
T Consensus 156 ~gLPLTipfiliPLiP 171 (274)
T KOG4539|consen 156 TGLPLTIPFILIPLIP 171 (274)
T ss_pred ecCcccchheeeccCC
Confidence 7788888877765443
No 311
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=31.00 E-value=2.1e+02 Score=33.71 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecCcc--cH---HHHHHHHhHcCCEEE
Q 001981 795 EAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPV--GK---ANKIKELQLKGMTVA 857 (986)
Q Consensus 795 ~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~--~K---~~~v~~l~~~g~~v~ 857 (986)
+..+.=+.|++.|+++.+..|+.......++++.+++.++....+. .. .++.+.|++.|-.|-
T Consensus 56 sL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~ 123 (471)
T TIGR03556 56 CLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAKAVYWNLDVEPYGRKRDRAVAAALKEAGIAVV 123 (471)
T ss_pred HHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHCCCEEE
Confidence 3444456778899999999999999999999999999999776432 22 235556666665443
No 312
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=30.97 E-value=1.7e+02 Score=34.09 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecCcc--cH---HHHHHHHhHcCCE
Q 001981 795 EAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPV--GK---ANKIKELQLKGMT 855 (986)
Q Consensus 795 ~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~--~K---~~~v~~l~~~g~~ 855 (986)
...+.=++|++.|++..+..|+.......+++++++..++++-.++ ++ ..+.+.+++.|-.
T Consensus 62 sL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~ 127 (429)
T TIGR02765 62 SLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVRTVFLHQEVGSEEKSVERLLQQALARLGIH 127 (429)
T ss_pred HHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHHHhcCce
Confidence 3444456778889999999999999999999999999999886543 33 2244445555544
No 313
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=30.85 E-value=7.5e+02 Score=27.12 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=48.3
Q ss_pred EEEeecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCCcccccCCcc--ccceee
Q 001981 126 CRLRIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAGFGADLISSGKD--VNKVHL 203 (986)
Q Consensus 126 ~~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~--~~~~~~ 203 (986)
++..++--.-..|.+.+++.+++.+||.+++.- + ..+.+.+..+..|+. .....+++ +.....
T Consensus 61 i~vyL~~~~~~~~~~~v~~~i~~~~gV~~v~~~--s------------re~~l~~L~~~lg~~-~~~~l~~nPLP~~~vV 125 (297)
T COG2177 61 ITVYLQIDADQDDAALVREKIEGIPGVKSVRFI--S------------REEALKELQPWLGFG-ALLMLDENPLPDVFVV 125 (297)
T ss_pred EEEEEecCCChHHHHHHHHHHhcCCCcceEEEe--C------------HHHHHHHHHHHcCch-hhhcCCCCCCCceEEE
Confidence 333333333489999999999999999987642 1 234555666667875 22211111 222233
Q ss_pred eecCCCCchhHHHHHHhhcCCCCeEEE
Q 001981 204 KLEGLNSSEDATFVQNFLESTQGVSQV 230 (986)
Q Consensus 204 ~v~Gm~c~~c~~~ie~~l~~~~gV~~~ 230 (986)
+++- +.....+.+.++++|||.++
T Consensus 126 ~~~~---p~~~~~i~~~l~~l~gV~~V 149 (297)
T COG2177 126 TPDD---PPQVKAIAAALRDLPGVAEV 149 (297)
T ss_pred EeCC---CccHHHHHHHHHcCccceeh
Confidence 3322 44455555555555555443
No 314
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=30.57 E-value=94 Score=27.39 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=40.6
Q ss_pred ceeeeecCCCCchhHHHHHHhhcCCCCeEEEE-----EecCCCEEEEEeCCCCCChHHHHHHHHHhc
Q 001981 200 KVHLKLEGLNSSEDATFVQNFLESTQGVSQVE-----IDLSEHKVTVSYDPNLTGPRSIIQYLEEAS 261 (986)
Q Consensus 200 ~~~~~v~Gm~c~~c~~~ie~~l~~~~gV~~~~-----vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g 261 (986)
|+.+.|--.+-++-. -+-+.|.+++||..++ ++-.+..+.|......++.+++.++|++.|
T Consensus 6 RlVLDVlKP~~p~i~-e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~G 71 (95)
T PF02680_consen 6 RLVLDVLKPHEPSIV-ELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELG 71 (95)
T ss_dssp EEEEEEEEESSS-HH-HHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT
T ss_pred EEEEEeecCCCCCHH-HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcC
Confidence 444444333333322 3456677788887664 455778888888888899999999999996
No 315
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 1 of allophanate hydrolase (AHS1), which is found in urea carboxylase.; PDB: 3VA7_A 3MML_H 3OEP_A 3OPF_C 3ORE_A 2ZP2_A 2KWA_A 2PHC_B.
Probab=30.47 E-value=95 Score=31.89 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=34.7
Q ss_pred HHHHHHhhcC--CCCeEEEEEecCCCEEEEEeCCCCCChHHHHHHHHHh
Q 001981 214 ATFVQNFLES--TQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEEA 260 (986)
Q Consensus 214 ~~~ie~~l~~--~~gV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~ 260 (986)
+..+.+.|++ .+||.++...+ .++.|.|||..++.+++.+.+++.
T Consensus 27 v~al~~~l~~~~~~gi~e~vp~~--~sllV~fdp~~~~~~~l~~~l~~~ 73 (202)
T PF02682_consen 27 VLALARALRAAPLPGIVEVVPAY--RSLLVHFDPLRIDRAALRAALEEL 73 (202)
T ss_dssp HHHHHHHHHHHT-TTEEEEEEES--SEEEEEESTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEeeccc--cEEEEEEcCCcCCHHHHHHHHHHh
Confidence 4455666666 78998776654 599999999999999999999876
No 316
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=30.46 E-value=2.3e+02 Score=30.36 Aligned_cols=123 Identities=13% Similarity=0.199 Sum_probs=66.9
Q ss_pred CCEEEEEEEecCC--CChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH---HcCC-----------------------
Q 001981 779 DGRVAGAFAVTDP--VKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAK---EVGI----------------------- 830 (986)
Q Consensus 779 ~~~~~G~i~~~d~--~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~---~~gi----------------------- 830 (986)
+++.-|++.+--. -.+++...+++++++|+ .++++|| .+.+..+ ++|.
T Consensus 124 ~G~IPGva~ivG~a~~~e~~~~I~~e~q~r~~-lv~l~G~---i~~q~~E~G~~lg~~~~lvp~G~~ts~~H~~g~AiRa 199 (287)
T cd01917 124 DWTIPGEAVILGRAKDSKALKKIVDDLMGRGF-MLFLCDE---IVEQLLEENVKLGLDYIAYPLGNFTQAIHAANYALRA 199 (287)
T ss_pred cCCCCeEEEEEecCCChHHHHHHHHHHHHCCc-EEEEecH---HHHHHHHcCCeeccceeEeecCchhhHHHHHHHHHHH
Confidence 3444454444332 23566667777777776 3445553 2222222 2333
Q ss_pred ceEEEecCcccHHHHHHHHhHc-CCEEEEEcCCcccHHHHHhCC---ce--EEecCCcHHHHHhcCEEEeCCChhHHHHH
Q 001981 831 GKVFAETDPVGKANKIKELQLK-GMTVAMVGDGINDSPALVAAD---VG--MAIGAGTDVAIEAADIVLIKSSLEDVVTA 904 (986)
Q Consensus 831 ~~~~~~~~p~~K~~~v~~l~~~-g~~v~~vGDg~nD~~al~~A~---vg--ia~~~~~~~~~~~ad~vl~~~~~~~l~~~ 904 (986)
..+|+.+.|.+..++....+++ +..|.+.| ..+|..+...++ .| +-.....+..++--+.++.+.+.+.+.+-
T Consensus 200 AliFggv~pGn~~ei~dY~~nRV~Afv~A~G-~~s~~~~A~aaGai~~GfPVI~d~~~pei~~~P~~~~~~~~~d~iv~~ 278 (287)
T cd01917 200 GLMFGGIEPGKREEIRDYQRRRVRAFVLYLG-ELDMVKTAAAAGAIFTGFPVITDQELPEDKQIPDWFFSSSDYDKIVQN 278 (287)
T ss_pred HHHhCCCCCcCHHHHHHHHHhhcCEEEEecc-ccCHHHHHHHhhHHHcCCCEEeCCCCcccccCccceecCCCHHHHHHH
Confidence 2578888998888888776654 67788888 455555444444 22 11212223222234566667777776654
Q ss_pred HH
Q 001981 905 ID 906 (986)
Q Consensus 905 i~ 906 (986)
-.
T Consensus 279 al 280 (287)
T cd01917 279 AL 280 (287)
T ss_pred HH
Confidence 33
No 317
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=30.26 E-value=2.7e+02 Score=23.57 Aligned_cols=65 Identities=12% Similarity=0.119 Sum_probs=47.0
Q ss_pred EEEEeCCCCCCHHHHHHHHHHcCCCCCCC-----CcccceEEEEeecCccChhhHHHHHHHhhccCCEEEEEe
Q 001981 90 AVVKFIPGLITAKRIKETVEEAGFPVDDF-----PEQDIAVCRLRIKGMMCTSCSESVERAIEMVDGVKKAVV 157 (986)
Q Consensus 90 ~~v~~~~~~~~~~~i~~~v~~~G~~~~~~-----~~~~~~~~~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v 157 (986)
..+..++.+--.+.+...+..-||..+.. +.++..+.++.+. -..+...+.+.|.++..|.++++
T Consensus 6 lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~---~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 6 LTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA---SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred EEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC---CCchHHHHHHHHhcCcCeEEEEE
Confidence 34444444445678888889999987532 2344566777774 47889999999999999998875
No 318
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=30.11 E-value=3.3e+02 Score=24.75 Aligned_cols=75 Identities=23% Similarity=0.203 Sum_probs=47.9
Q ss_pred EEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEecCcc-cHHHHHHHHhHcCCE--EEEEcC
Q 001981 785 AFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAETDPV-GKANKIKELQLKGMT--VAMVGD 861 (986)
Q Consensus 785 ~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~-~K~~~v~~l~~~g~~--v~~vGD 861 (986)
++.+.|.-+++..+.++.|.+.|+++. .|+ .|++.+. +.|++.....--++ ...++.+.+++.|+. |..+-|
T Consensus 3 ~isv~d~~K~~~~~~a~~l~~~G~~i~-AT~---gTa~~L~-~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 3 FLSVSDHVKAMLVDLAPKLSSDGFPLF-ATG---GTSRVLA-DAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred EEEEEcccHHHHHHHHHHHHHCCCEEE-ECc---HHHHHHH-HcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCC
Confidence 567788889999999999999999874 775 3555554 47886433222223 345677766552543 344445
Q ss_pred Ccc
Q 001981 862 GIN 864 (986)
Q Consensus 862 g~n 864 (986)
+.+
T Consensus 78 ~~~ 80 (112)
T cd00532 78 PRR 80 (112)
T ss_pred CCc
Confidence 433
No 319
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=29.68 E-value=4.6e+02 Score=31.21 Aligned_cols=48 Identities=29% Similarity=0.367 Sum_probs=39.0
Q ss_pred hhhHHHHHHHhhccCCEEEEEeecCCC------------------eEEEEeCCCCCChhHHHHHHH
Q 001981 136 TSCSESVERAIEMVDGVKKAVVGVALE------------------EAKVHFDPNLTDTDHIVEAIE 183 (986)
Q Consensus 136 ~~C~~~ie~~l~~~~gV~~~~v~~~~~------------------~~~v~~~~~~~~~~~i~~~i~ 183 (986)
++|=+-+|..+.+++||.++.+-++.+ .+.|.|||..++.++|.+..=
T Consensus 205 gGCFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~gtgH~E~V~V~yDp~~is~~~Ll~~f~ 270 (521)
T PRK14018 205 GGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSGHAETVKVTYDADKLSLDTILQYYF 270 (521)
T ss_pred cCCchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCCCCcEEEEEEEECCCcCcHHHHHHHHH
Confidence 378888899999999999998855543 367889999999988877653
No 320
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=29.30 E-value=28 Score=34.99 Aligned_cols=13 Identities=54% Similarity=0.731 Sum_probs=12.2
Q ss_pred EEecCCCccccCc
Q 001981 651 VVFDKTGTLTVGK 663 (986)
Q Consensus 651 i~fDKTGTLT~g~ 663 (986)
+|||.+||||.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6999999999997
No 321
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.15 E-value=2.5e+02 Score=30.49 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=31.2
Q ss_pred HHHHHHhH-----cCCEEEEEcC-CcccHH---HHHhCCceEEec-C-Cc--HHHHHhcCEEEeC
Q 001981 844 NKIKELQL-----KGMTVAMVGD-GINDSP---ALVAADVGMAIG-A-GT--DVAIEAADIVLIK 895 (986)
Q Consensus 844 ~~v~~l~~-----~g~~v~~vGD-g~nD~~---al~~A~vgia~~-~-~~--~~~~~~ad~vl~~ 895 (986)
.+++.|+. .|+++++||. ++-=.| +|.+++..+.+. + .. ......||+++..
T Consensus 144 avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~a 208 (284)
T PRK14179 144 GIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVA 208 (284)
T ss_pred HHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEe
Confidence 34454543 4899999999 444444 455666555543 2 22 2334689999874
No 322
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=29.14 E-value=4.4e+02 Score=25.12 Aligned_cols=69 Identities=14% Similarity=0.078 Sum_probs=53.0
Q ss_pred CCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEc--CCCHHHHHHHHHHcCCceEE--EecCcccHHHHHHHHh
Q 001981 779 DGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVT--GDNWATANAIAKEVGIGKVF--AETDPVGKANKIKELQ 850 (986)
Q Consensus 779 ~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~T--gd~~~~a~~~a~~~gi~~~~--~~~~p~~K~~~v~~l~ 850 (986)
+|+++-+...++-- ..+.|+.+.+.|..++++| ...+.+++.++..++-.-+. ..++-++|.++.+.+.
T Consensus 51 ~G~~l~l~S~R~~~---~~evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~ly~P~~dlsveeK~~l~~~~~ 123 (138)
T PF04312_consen 51 DGELLDLKSSRNMS---RSEVIEWISEYGKPVIVATDVSPPPETVKKIARSFNAVLYTPERDLSVEEKQELAREYS 123 (138)
T ss_pred CCcEEEEEeecCCC---HHHHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhCCcccCCCCcCCHHHHHHHHHhhC
Confidence 78888877776654 4566777788999999999 46799999999999864332 2466688999888765
No 323
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.13 E-value=1.7e+02 Score=31.90 Aligned_cols=44 Identities=27% Similarity=0.285 Sum_probs=25.9
Q ss_pred cCCEEEEEcCCcc----cHHHHHh--CCceEEecCCc--HHHHHhcCEEEeC
Q 001981 852 KGMTVAMVGDGIN----DSPALVA--ADVGMAIGAGT--DVAIEAADIVLIK 895 (986)
Q Consensus 852 ~g~~v~~vGDg~n----D~~al~~--A~vgia~~~~~--~~~~~~ad~vl~~ 895 (986)
.|+.|+.||.+.. =+.+|.+ |.|-++-.... ......||+++..
T Consensus 157 ~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvIsA 208 (297)
T PRK14186 157 AGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITREADILVAA 208 (297)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEc
Confidence 3889999999833 1224444 44544443222 2344679999874
No 324
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=29.13 E-value=1.6e+02 Score=25.24 Aligned_cols=45 Identities=20% Similarity=0.111 Sum_probs=31.1
Q ss_pred EEecCCCChhHHHHHHHHHHCCCeEEE-EcCCCHHHHHHHHHHcCC
Q 001981 786 FAVTDPVKPEAQIVVSSLRSMEISSIM-VTGDNWATANAIAKEVGI 830 (986)
Q Consensus 786 i~~~d~~~~~~~~~i~~l~~~gi~~~~-~Tgd~~~~a~~~a~~~gi 830 (986)
+.+.+...+.+.+..+.||+.|+++.+ ..+.+...-...|++.|+
T Consensus 7 i~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~ 52 (91)
T cd00860 7 IPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKI 52 (91)
T ss_pred EeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCC
Confidence 344566778888889999999998876 445555555555555555
No 325
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=28.99 E-value=28 Score=29.88 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=16.5
Q ss_pred eeCCCcCCCcEEEEc-CCCcccc
Q 001981 455 INTQLMQKNDIIKIL-PGEKVPV 476 (986)
Q Consensus 455 i~~~~l~~GDii~v~-~Ge~IPa 476 (986)
+.-.+|.+||.|.|. .||.||-
T Consensus 45 i~~~~i~~Gd~V~V~raGdVIP~ 67 (82)
T PF03120_consen 45 IKELDIRIGDTVLVTRAGDVIPK 67 (82)
T ss_dssp HHHTT-BBT-EEEEEEETTTEEE
T ss_pred HHHcCCCCCCEEEEEECCCccce
Confidence 445789999999986 8999996
No 326
>PRK09579 multidrug efflux protein; Reviewed
Probab=28.74 E-value=4.5e+02 Score=34.48 Aligned_cols=121 Identities=11% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCEEEEEeecCCCeEEE--EeCCCCCChhHHHHHHHhc---------CCCcccccC--Cccccceeeee
Q 001981 139 SESVERAIEMVDGVKKAVVGVALEEAKV--HFDPNLTDTDHIVEAIEDA---------GFGADLISS--GKDVNKVHLKL 205 (986)
Q Consensus 139 ~~~ie~~l~~~~gV~~~~v~~~~~~~~v--~~~~~~~~~~~i~~~i~~~---------Gy~~~~~~~--~~~~~~~~~~v 205 (986)
...+|++++.++|+.+++-.-..+...| +++++........+.-++. |-+...... .....-..+.+
T Consensus 64 t~plE~~L~~v~gi~~i~S~S~~G~s~I~v~f~~g~d~~~a~~~v~~~v~~v~~~LP~~~~~P~i~~~~~~~~~v~~~~~ 143 (1017)
T PRK09579 64 TQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRLFTELLAKANEVKNQLPQDAEDPVLSKEAADASALMYISF 143 (1017)
T ss_pred HHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCCCHHHHHHHHHHHHHHHHHhCCCCCCCCeEEeCCCCCcceEEEEE
Q ss_pred cCCCCchh------HHHHHHhhcCCCCeEEEEEe-cCCCEEEEEeCCCC-----CChHHHHHHHHH
Q 001981 206 EGLNSSED------ATFVQNFLESTQGVSQVEID-LSEHKVTVSYDPNL-----TGPRSIIQYLEE 259 (986)
Q Consensus 206 ~Gm~c~~c------~~~ie~~l~~~~gV~~~~vn-~~~~~~~v~~~~~~-----~~~~~i~~~i~~ 259 (986)
.+-.-..- .+.+++.|+++|||.++++. .....+.|+.||.. ++.+++.++++.
T Consensus 144 ~~~~~~~~~L~~~~~~~i~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~dV~~al~~ 209 (1017)
T PRK09579 144 YSEEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSAGDVTQAVRR 209 (1017)
T ss_pred ECCCCCHHHHHHHHHHHHHHHhhcCCCceEEEecCCCceEEEEEeCHHHHHHcCCCHHHHHHHHHH
No 327
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=28.70 E-value=2.8e+02 Score=35.92 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=76.6
Q ss_pred eEEEeeCCCcCCCcEEEEcCCCcccccEEEEeccce-eeccccccCCcceecCCCCceeeeeeecCceEEEE--------
Q 001981 451 SEMDINTQLMQKNDIIKILPGEKVPVDGVVTDGQSY-VNESMITGEAKPIAKGPGDKVIGGTMNENGCLQVK-------- 521 (986)
Q Consensus 451 ~~~~i~~~~l~~GDii~v~~Ge~IPaDg~vl~G~~~-Vdes~lTGEs~pv~k~~g~~v~aGs~~~~g~~~~~-------- 521 (986)
....+...+.+|-|.+.++ |+..-+|=-.+.|++. ++-. .|+.. .-..|..+..|... +.+...
T Consensus 188 DiV~l~~Gd~IPaD~~li~-g~~l~VdES~LTGES~pv~K~--~~~~n--~v~~GT~v~~G~~~--~iV~~tG~~T~~gk 260 (941)
T TIGR01517 188 DIVSLSTGDVVPADGVFIS-GLSLEIDESSITGESDPIKKG--APKDS--FLLSGTVVNEGSGR--MLVTAVGVNSFGGK 260 (941)
T ss_pred CEEEECCCCEecccEEEEE-cCcEEEEecccCCCCCccccc--CCCCc--eEEeCCeEEeeEEE--EEEEEeCCCcHHHH
Confidence 3456788899999999886 4344455555556652 2211 12211 12456666666522 111111
Q ss_pred ----EEEeCCchHHHHHHHHHHHHhhcCChHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccCC--CCCcccccchhhH
Q 001981 522 ----ATHVGSETALSQIVQLVEAAQLARAPVQKLADQISRFFVPMVVAAAFITWLGWFIPGVAGL--YPKHWIPKVMDEF 595 (986)
Q Consensus 522 ----v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 595 (986)
+......|.+.+ .+.++.+.+..+.+.+.++..++.++.|++....+. .+..+.......+
T Consensus 261 i~~~~~~~~~~t~l~~-------------~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (941)
T TIGR01517 261 LMMELRAEGEDTPLQE-------------KLSELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHF 327 (941)
T ss_pred HHHhhccCCCCCcHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHH
Confidence 111112222222 244555666554444433333333332222110000 0000001112356
Q ss_pred HHHHHHHhhhhhhhcccchhhhHHHHHHHHHH
Q 001981 596 ELALQFGISVLVVACPCALGLATPTAVMVATG 627 (986)
Q Consensus 596 ~~~~~~~i~vlv~~~P~al~la~~~a~~~~~~ 627 (986)
..++...++....+.|.+++++...+.....+
T Consensus 328 ~~al~llv~~iP~~Lp~~vti~l~~~~~~mak 359 (941)
T TIGR01517 328 IIAVTIVVVAVPEGLPLAVTIALAYSMKKMMK 359 (941)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHh
Confidence 77888888888888888888888887655443
No 328
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=28.52 E-value=3.6e+02 Score=28.00 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCCeEE-EEc------------CCCHHHHHHHHHHcCCceEEEecC---ccc---HHHHHHHHhHcCCEE
Q 001981 796 AQIVVSSLRSMEISSI-MVT------------GDNWATANAIAKEVGIGKVFAETD---PVG---KANKIKELQLKGMTV 856 (986)
Q Consensus 796 ~~~~i~~l~~~gi~~~-~~T------------gd~~~~a~~~a~~~gi~~~~~~~~---p~~---K~~~v~~l~~~g~~v 856 (986)
..-++..++++|+++. ++| +.....++.+|+.+||......+. +.. -...++.++++|-..
T Consensus 10 S~~al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~g~~~ 89 (218)
T TIGR03679 10 SNYALYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKEKEVEDLKGALKELKREGVEG 89 (218)
T ss_pred HHHHHHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHHHcCCCE
Confidence 3445566666777663 433 346678899999999987766655 222 223455555568778
Q ss_pred EEEcCCccc
Q 001981 857 AMVGDGIND 865 (986)
Q Consensus 857 ~~vGDg~nD 865 (986)
+..||-.-|
T Consensus 90 vv~G~i~sd 98 (218)
T TIGR03679 90 IVTGAIASR 98 (218)
T ss_pred EEECCcccH
Confidence 888886544
No 329
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=28.47 E-value=1.6e+02 Score=32.84 Aligned_cols=59 Identities=29% Similarity=0.397 Sum_probs=43.2
Q ss_pred EEEEc-CCCHHHHHHHHHHcCCce--EEEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHHHh
Q 001981 810 SIMVT-GDNWATANAIAKEVGIGK--VFAETDPVGKANKIKELQLKGMTVAMVGDGINDSPALVA 871 (986)
Q Consensus 810 ~~~~T-gd~~~~a~~~a~~~gi~~--~~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~ 871 (986)
|+-.| |.+.+-...-|+.+|+.. +...-+|.+|.+-++.+ |..|...||..+|+.+...
T Consensus 77 ViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~---GaeVil~g~~~dda~~~a~ 138 (347)
T COG1171 77 VIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGY---GAEVILHGDNFDDAYAAAE 138 (347)
T ss_pred eEEecCCcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhc---CCEEEEECCCHHHHHHHHH
Confidence 44455 667777778889999964 45667899998877764 6678888888887765543
No 330
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=28.24 E-value=3e+02 Score=30.06 Aligned_cols=76 Identities=17% Similarity=0.315 Sum_probs=51.0
Q ss_pred cCCCChhHHHHHHHHHHCC-CeEEEEcCCCHHHHHHHHHHcC-CceEEEecCcccH---------------HHHHH---H
Q 001981 789 TDPVKPEAQIVVSSLRSME-ISSIMVTGDNWATANAIAKEVG-IGKVFAETDPVGK---------------ANKIK---E 848 (986)
Q Consensus 789 ~d~~~~~~~~~i~~l~~~g-i~~~~~Tgd~~~~a~~~a~~~g-i~~~~~~~~p~~K---------------~~~v~---~ 848 (986)
+-.+.+...+.|+.+|+.| +.+.++|.-.. ..+.+++. .+.++..+..-++ ..+++ .
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgsl---pdv~~~L~~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~ 166 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSL---PDVLEELKLPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEI 166 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCCh---HHHHHHhccCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 5578999999999999999 79999998777 44444553 5566655532211 12333 3
Q ss_pred HhH--cCCEE--EEEcCCcccHH
Q 001981 849 LQL--KGMTV--AMVGDGINDSP 867 (986)
Q Consensus 849 l~~--~g~~v--~~vGDg~nD~~ 867 (986)
+++ .|..| .|+..|.||..
T Consensus 167 ~~~~~~~~~vir~tlvkg~N~~~ 189 (296)
T COG0731 167 FRSEYKGRTVIRTTLVKGINDDE 189 (296)
T ss_pred hhhcCCCcEEEEEEEeccccCCh
Confidence 444 45554 38899999876
No 331
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=28.19 E-value=1.1e+03 Score=28.02 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=78.3
Q ss_pred eEEEeeCCCcCCCcEEEEcCCCcccccEEEEeccce-eeccccccCCcceecCCCCceeeeeeecCceEEEEEEEeCCch
Q 001981 451 SEMDINTQLMQKNDIIKILPGEKVPVDGVVTDGQSY-VNESMITGEAKPIAKGPGDKVIGGTMNENGCLQVKATHVGSET 529 (986)
Q Consensus 451 ~~~~i~~~~l~~GDii~v~~Ge~IPaDg~vl~G~~~-Vdes~lTGEs~pv~k~~g~~v~aGs~~~~g~~~~~v~~~g~~t 529 (986)
....+...+..|-|.+.++. ..-+|--.+.|++. +.-. .|+. ...|..++.|+....=.....- ....
T Consensus 56 Div~v~~G~~iP~Dg~vl~g--~~~vdes~LTGEs~pv~k~--~g~~----v~~gs~~~~G~~~~~v~~~~~~---s~~~ 124 (499)
T TIGR01494 56 DIVLVKSGEIVPADGVLLSG--SCFVDESNLTGESVPVLKT--AGDA----VFAGTYVFNGTLIVVVSATGPN---TFGG 124 (499)
T ss_pred CEEEECCCCEeeeeEEEEEc--cEEEEcccccCCCCCeeec--cCCc----cccCcEEeccEEEEEEEEeccc---cHHH
Confidence 45677888899999998866 45556666677763 2221 1432 3567788888865421111100 1111
Q ss_pred HHHHHHHHHHHHhhc-CChHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHh--hccCCCCCcccccchhhHHHHHHHHhhh
Q 001981 530 ALSQIVQLVEAAQLA-RAPVQKLA-DQISRFFVPMVVAAAFITWLGWFIP--GVAGLYPKHWIPKVMDEFELALQFGISV 605 (986)
Q Consensus 530 ~~~~i~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~v 605 (986)
.+.++.+.-.+.+.+ .....++. ..+..+.+.+.+ +.++.++.++.. .. ...+..++...+..
T Consensus 125 ~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~~~~la~-~~~~~~~~~~~~~~~~------------~~~~~~~~~vl~~~ 191 (499)
T TIGR01494 125 KIAVVVYTGFETKTPLQPKLDRLSDIIFILFVLLIAL-AVFLFWAIGLWDPNSI------------FKIFLRALILLVIA 191 (499)
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcccccH------------HHHHHHHHHHHHHh
Confidence 122222222221111 22233444 344443333333 333333322211 00 01456677788888
Q ss_pred hhhhcccchhhhHHHHHHHHHH
Q 001981 606 LVVACPCALGLATPTAVMVATG 627 (986)
Q Consensus 606 lv~~~P~al~la~~~a~~~~~~ 627 (986)
...+.|.+++++...+.....+
T Consensus 192 ~P~aL~~~~~~~~~~~~~~~~~ 213 (499)
T TIGR01494 192 IPIALPLAVTIALAVGDARLAK 213 (499)
T ss_pred cCCcHHHHHHHHHHHHHHHHHH
Confidence 8999999998888888766553
No 332
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=27.92 E-value=1.1e+02 Score=26.87 Aligned_cols=65 Identities=25% Similarity=0.242 Sum_probs=43.0
Q ss_pred EEEEeecCccChhhHHHHHHHhhccCCEEEEEe-----ecCCCeEEEEeCCCCCChhHHHHHHHhcCCCcc
Q 001981 125 VCRLRIKGMMCTSCSESVERAIEMVDGVKKAVV-----GVALEEAKVHFDPNLTDTDHIVEAIEDAGFGAD 190 (986)
Q Consensus 125 ~~~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v-----~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 190 (986)
++.+.+--.+-++ .-.+...|.+++||..+.+ +..+..+.+......++.+++.++|++.|-..+
T Consensus 6 RlVLDVlKP~~p~-i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IH 75 (95)
T PF02680_consen 6 RLVLDVLKPHEPS-IVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIH 75 (95)
T ss_dssp EEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEE
T ss_pred EEEEEeecCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEE
Confidence 4444444443333 3356788899999987764 556677777776667889999999999996544
No 333
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=27.71 E-value=8.6e+02 Score=31.94 Aligned_cols=122 Identities=9% Similarity=0.044 Sum_probs=69.5
Q ss_pred HHHHHHHHHhCCCCceEEEeecc-----CceEEEEeCCCC---CCHHHHHHHHHHcC--C-CCCC---CC---c-c---c
Q 001981 64 CATSIESVLSNLNGVESAVVSPL-----EGQAVVKFIPGL---ITAKRIKETVEEAG--F-PVDD---FP---E-Q---D 122 (986)
Q Consensus 64 C~~~I~~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~---~~~~~i~~~v~~~G--~-~~~~---~~---~-~---~ 122 (986)
-...+++.+++.|+|..+..... .+...+...+.. .+.+++.+.+.+.- + ++.. .. . . .
T Consensus 578 ~~~~~~~~l~~~~~V~~v~~~~g~~~~~~~~~~v~l~~~~~r~~~~~~i~~~lr~~l~~~pg~~~~~~~~~~~~~~g~~~ 657 (1025)
T PRK10614 578 KLQDFMKIIRDDPAVDNVTGFTGGSRVNSGMMFITLKPLSERSETAQQVIDRLRVKLAKEPGANLFLMAVQDIRVGGRQS 657 (1025)
T ss_pred HHHHHHHHHhcCCCeEEEEEEecCCCCceeEEEEEecchhhccCcHHHHHHHHHHHHhcCCCcEEEecCCcccCcCCCCC
Confidence 34445666777788877654321 234455554321 13455555444321 1 1110 00 0 1 1
Q ss_pred ceEEEEeecCccCh---hhHHHHHHHhhccCCEEEEEeecCCC--eEEEEeCCC-----CCChhHHHHHHHhc
Q 001981 123 IAVCRLRIKGMMCT---SCSESVERAIEMVDGVKKAVVGVALE--EAKVHFDPN-----LTDTDHIVEAIEDA 185 (986)
Q Consensus 123 ~~~~~~~i~gm~C~---~C~~~ie~~l~~~~gV~~~~v~~~~~--~~~v~~~~~-----~~~~~~i~~~i~~~ 185 (986)
...+.+++.|-.-. .-+..+++.+++.||+.++..++..+ .+.+..|+. -++..++.+.++..
T Consensus 658 ~~~i~i~l~G~d~~~L~~~a~~i~~~L~~~pgv~~v~~~~~~~~~el~i~id~~ka~~~Gls~~~v~~~l~~~ 730 (1025)
T PRK10614 658 NASYQYTLLSDDLAALREWEPKIRKALAALPELADVNSDQQDKGAEMALTYDRDTMARLGIDVQAANSLLNNA 730 (1025)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCceEEEEECHHHHHHcCCCHHHHHHHHHHH
Confidence 12366677775433 23577999999999999999877665 566776664 35677888888764
No 334
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=27.51 E-value=4.4e+02 Score=27.99 Aligned_cols=33 Identities=18% Similarity=0.457 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCCCeEEEEEecC-------------CCEEEEEeCCC
Q 001981 214 ATFVQNFLESTQGVSQVEIDLS-------------EHKVTVSYDPN 246 (986)
Q Consensus 214 ~~~ie~~l~~~~gV~~~~vn~~-------------~~~~~v~~~~~ 246 (986)
.+.+++.++.++||.+++|++. +.++.|+|.|.
T Consensus 109 egELarTI~~idgV~~ArVhL~lP~~~~~~~~~~asASV~I~~~~~ 154 (249)
T PRK15348 109 EQRIEGMLSQMEGVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQ 154 (249)
T ss_pred HHHHHHHHHhCCCeeEeEEEEECCCCCcccCCCCccEEEEEEeCCC
Confidence 3679999999999999998764 45777888876
No 335
>PRK11018 hypothetical protein; Provisional
Probab=27.50 E-value=2.3e+02 Score=24.05 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=41.7
Q ss_pred EEEeecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCCccc
Q 001981 126 CRLRIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAGFGADL 191 (986)
Q Consensus 126 ~~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 191 (986)
.++.+.|..|+...-+.+++|.+++. .+.+.|..|.+ .+.+.+....++.||+...
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~-~a~~di~~~~~~~G~~v~~ 64 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCP-QSINNIPLDARNHGYTVLD 64 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCc-cHHHHHHHHHHHcCCEEEE
Confidence 56889999999999999999988763 22344444433 3567888899999998743
No 336
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=27.37 E-value=1.6e+02 Score=26.96 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=40.9
Q ss_pred EEEEEEEecCCCChhHHHHHHHHHHCCC-e-EEEEcCCCHHHHHHHHHHcCCceEEE
Q 001981 781 RVAGAFAVTDPVKPEAQIVVSSLRSMEI-S-SIMVTGDNWATANAIAKEVGIGKVFA 835 (986)
Q Consensus 781 ~~~G~i~~~d~~~~~~~~~i~~l~~~gi-~-~~~~Tgd~~~~a~~~a~~~gi~~~~~ 835 (986)
.++|+....+.-.+.+++.++.+|+.+- + .+++-|.....-...+++.|.+.++.
T Consensus 52 dvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 52 DAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred CEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEEC
Confidence 4566666667777999999999999976 4 46777766554456889999987764
No 337
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=27.37 E-value=1.4e+02 Score=27.40 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=31.1
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEE
Q 001981 793 KPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVF 834 (986)
Q Consensus 793 ~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~ 834 (986)
.+++.++++.++++|++++.+|++.. -..++.+.|...+.
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~~~~~~~ 95 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGGK--LLEMAREHGVPVII 95 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHcCCcEEE
Confidence 58899999999999999999998764 44466666654444
No 338
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=27.04 E-value=90 Score=28.79 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=29.3
Q ss_pred CChhHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHcCCc
Q 001981 792 VKPEAQIVVSSLRSMEIS-SIMVTGDNWATANAIAKEVGIG 831 (986)
Q Consensus 792 ~~~~~~~~i~~l~~~gi~-~~~~Tgd~~~~a~~~a~~~gi~ 831 (986)
..+.+.+.++++.+.|++ +|+.+|.....+...+++.|+.
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-E
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCE
Confidence 456788999999999987 7888998888888999988874
No 339
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=27.00 E-value=2.4e+02 Score=27.86 Aligned_cols=70 Identities=27% Similarity=0.413 Sum_probs=49.7
Q ss_pred ChhHHHHHHHHHHCCC--eEEEEcC--CCHHHHHHHHHHcCCc--eEEEecCcccH-HHHHHHHhHcCC---EEEEEcCC
Q 001981 793 KPEAQIVVSSLRSMEI--SSIMVTG--DNWATANAIAKEVGIG--KVFAETDPVGK-ANKIKELQLKGM---TVAMVGDG 862 (986)
Q Consensus 793 ~~~~~~~i~~l~~~gi--~~~~~Tg--d~~~~a~~~a~~~gi~--~~~~~~~p~~K-~~~v~~l~~~g~---~v~~vGDg 862 (986)
+.++..+=+.|++.|+ ..+++|. +..+|++.+++.+|.+ ..+.+..|..- ..++..++..++ .++.||--
T Consensus 31 ~~ea~~~a~~L~~~~~~~D~VL~Spa~Ra~QTae~v~~~~~~~~~~~~~~l~p~~d~~~~l~~l~~~~d~v~~vllVgH~ 110 (163)
T COG2062 31 RKEAELVAAWLAGQGVEPDLVLVSPAVRARQTAEIVAEHLGEKKVEVFEELLPNGDPGTVLDYLEALGDGVGSVLLVGHN 110 (163)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEeChhHHHHHHHHHHHHhhCcccceeccccCCCCCHHHHHHHHHHhcccCceEEEECCC
Confidence 3455666688999988 4678876 5789999999999955 56777777644 345555555543 68888864
No 340
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=26.67 E-value=8.7e+02 Score=26.53 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCCH--------------HHHHHHHHHcCCceE-EEecCcccHHHHHHHHhHcCCEEE
Q 001981 793 KPEAQIVVSSLRSMEISSIMVTGDNW--------------ATANAIAKEVGIGKV-FAETDPVGKANKIKELQLKGMTVA 857 (986)
Q Consensus 793 ~~~~~~~i~~l~~~gi~~~~~Tgd~~--------------~~a~~~a~~~gi~~~-~~~~~p~~K~~~v~~l~~~g~~v~ 857 (986)
.+....+.+.|++-+... ++|+... ..+.++....|-+.+ +..-++.--..++++.+...++++
T Consensus 167 y~KL~kA~~yLqnP~clf-latn~D~~~p~~~~~~ipG~G~~v~av~~~t~R~P~v~GKP~~~m~~~l~~~~~i~psRt~ 245 (306)
T KOG2882|consen 167 YPKLMKALNYLQNPGCLF-LATNRDATTPPTPGVEIPGAGSFVAAVKFATGRQPIVLGKPSTFMFEYLLEKFNIDPSRTC 245 (306)
T ss_pred HHHHHHHHHHhCCCCcEE-EeccCccccCCCCCeeccCCccHHHHHHHHhcCCCeecCCCCHHHHHHHHHHcCCCcceEE
Confidence 466777888888776644 4444332 223344433343332 222223333346666666788999
Q ss_pred EEcCCcc-cHHHHHhCCce
Q 001981 858 MVGDGIN-DSPALVAADVG 875 (986)
Q Consensus 858 ~vGDg~n-D~~al~~A~vg 875 (986)
||||..| |+.--+.++..
T Consensus 246 mvGDRL~TDIlFG~~~G~~ 264 (306)
T KOG2882|consen 246 MVGDRLDTDILFGKNCGFK 264 (306)
T ss_pred EEcccchhhhhHhhccCcc
Confidence 9999977 66665666665
No 341
>PRK15108 biotin synthase; Provisional
Probab=26.50 E-value=7.1e+02 Score=27.91 Aligned_cols=72 Identities=15% Similarity=0.282 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceE----------EEec----CcccHHHHHHHHhHcCCEEE--
Q 001981 794 PEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKV----------FAET----DPVGKANKIKELQLKGMTVA-- 857 (986)
Q Consensus 794 ~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~----------~~~~----~p~~K~~~v~~l~~~g~~v~-- 857 (986)
+...++++.+|+.|+.+.+--|.-......-.++.|++.+ |.++ +.+++.+.++.+++.|-.+.
T Consensus 111 e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg 190 (345)
T PRK15108 111 PYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSG 190 (345)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeE
Confidence 6788899999999998765556655666666778899733 3333 33567788888888886544
Q ss_pred -EEcCCccc
Q 001981 858 -MVGDGIND 865 (986)
Q Consensus 858 -~vGDg~nD 865 (986)
++|=|-.+
T Consensus 191 ~i~GlgEt~ 199 (345)
T PRK15108 191 GIVGLGETV 199 (345)
T ss_pred EEEeCCCCH
Confidence 77766443
No 342
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=26.43 E-value=1.3e+02 Score=27.85 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=39.9
Q ss_pred CCCChhHHHHHHHHHHCCCeE---EEEcCCCHHHHH------HHHHHcCCceEEEec----CcccHHHHHHHHhHcC
Q 001981 790 DPVKPEAQIVVSSLRSMEISS---IMVTGDNWATAN------AIAKEVGIGKVFAET----DPVGKANKIKELQLKG 853 (986)
Q Consensus 790 d~~~~~~~~~i~~l~~~gi~~---~~~Tgd~~~~a~------~~a~~~gi~~~~~~~----~p~~K~~~v~~l~~~g 853 (986)
..++.+.++-++.|++.|+.+ ++..|+++.... ..|+++||......+ +.++-.+.|+.|.+..
T Consensus 10 ~~i~~~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~ 86 (117)
T PF00763_consen 10 KEIKEELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDP 86 (117)
T ss_dssp HHHHHHHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 346778889999999998864 455688776554 568899997555554 4555566777776653
No 343
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=26.27 E-value=2.6e+02 Score=30.64 Aligned_cols=78 Identities=15% Similarity=0.124 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHhCCCCceEEEeeccCceEEEEeCCCCCCHHHHHHHHHHcCCCCC-CCC-cccceEEEEeecCccChhhH
Q 001981 62 ASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAGFPVD-DFP-EQDIAVCRLRIKGMMCTSCS 139 (986)
Q Consensus 62 ~~C~~~I~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~G~~~~-~~~-~~~~~~~~~~i~gm~C~~C~ 139 (986)
..|++.+++.+++.|||.++.+- ...+...+..+..|+... ..+ .+=.....++++. +.-.
T Consensus 71 ~~~~~~v~~~i~~~~gV~~v~~~--------------sre~~l~~L~~~lg~~~~~~l~~nPLP~~~vV~~~~---p~~~ 133 (297)
T COG2177 71 QDDAALVREKIEGIPGVKSVRFI--------------SREEALKELQPWLGFGALLMLDENPLPDVFVVTPDD---PPQV 133 (297)
T ss_pred hHHHHHHHHHHhcCCCcceEEEe--------------CHHHHHHHHHHHcCchhhhcCCCCCCCceEEEEeCC---CccH
Confidence 88999999999999999876553 123566777778887411 111 1112234444444 5566
Q ss_pred HHHHHHhhccCCEEEEE
Q 001981 140 ESVERAIEMVDGVKKAV 156 (986)
Q Consensus 140 ~~ie~~l~~~~gV~~~~ 156 (986)
..+.+.+++++||.+++
T Consensus 134 ~~i~~~l~~l~gV~~V~ 150 (297)
T COG2177 134 KAIAAALRDLPGVAEVD 150 (297)
T ss_pred HHHHHHHHcCccceehh
Confidence 67888888888888764
No 344
>PRK11018 hypothetical protein; Provisional
Probab=26.16 E-value=1.9e+02 Score=24.52 Aligned_cols=53 Identities=13% Similarity=-0.006 Sum_probs=40.3
Q ss_pred eeeeecCCCCchhHHHHHHhhcCCCCeEEEEEecCCCEEEEEeCCCCCChHHHHHHHHHhcCC
Q 001981 201 VHLKLEGLNSSEDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPNLTGPRSIIQYLEEASHG 263 (986)
Q Consensus 201 ~~~~v~Gm~c~~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~~~~~~~i~~~i~~~g~~ 263 (986)
.++.+.|+.||--.-+..++|++++ ..+.+.|..| +..+.+++...+++.||.
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~---------~G~~L~V~~d-~~~a~~di~~~~~~~G~~ 61 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLK---------KGEILEVVSD-CPQSINNIPLDARNHGYT 61 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCC---------CCCEEEEEeC-CccHHHHHHHHHHHcCCE
Confidence 4789999999999999999999874 2233445444 234578899999999875
No 345
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=26.05 E-value=1.6e+02 Score=29.32 Aligned_cols=114 Identities=16% Similarity=0.177 Sum_probs=59.5
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHH----HHc-CCceEEEe---cCcccHHHHHHHHhHcCCEEEEEcCCcccHHH
Q 001981 797 QIVVSSLRSMEISSIMVTGDNWATANAIA----KEV-GIGKVFAE---TDPVGKANKIKELQLKGMTVAMVGDGINDSPA 868 (986)
Q Consensus 797 ~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a----~~~-gi~~~~~~---~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~a 868 (986)
.+.++.+.+.|.++.++-|+. ..+...+ ++. |+.-+-.. .++++-.++++.+++.+-.+++||-|.---+.
T Consensus 38 ~~l~~~~~~~~~~ifllG~~~-~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~ 116 (172)
T PF03808_consen 38 PDLLRRAEQRGKRIFLLGGSE-EVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQER 116 (172)
T ss_pred HHHHHHHHHcCCeEEEEeCCH-HHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHH
Confidence 445566666677777775543 3333222 222 33222111 24566778888888888888899988664443
Q ss_pred HHh-------CCceEEecCCcHHHHH---hcCEEEeCCChhHHHHHHHHHHHH
Q 001981 869 LVA-------ADVGMAIGAGTDVAIE---AADIVLIKSSLEDVVTAIDLSRKT 911 (986)
Q Consensus 869 l~~-------A~vgia~~~~~~~~~~---~ad~vl~~~~~~~l~~~i~~~r~~ 911 (986)
+-. +.+.+++|..-+.... -|.-.+..-++..+..++.+=|+.
T Consensus 117 ~~~~~~~~l~~~v~i~vG~~~d~~aG~~~raP~w~~~~glEWlyRl~~eP~Rl 169 (172)
T PF03808_consen 117 WIARHRQRLPAGVIIGVGGAFDFLAGKVKRAPKWMRRLGLEWLYRLLQEPKRL 169 (172)
T ss_pred HHHHHHHHCCCCEEEEECchhhhhccCcCccCHHHHHcCcHHHHHHHhChHhh
Confidence 322 2366666654332211 111122233455555555554444
No 346
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=25.85 E-value=6.3e+02 Score=25.45 Aligned_cols=86 Identities=13% Similarity=0.145 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHCCCeEEE--EcCCCHHHHHHHHHHcCCceEEEec--Cccc-----HHHHHHHHhHcCCEEEEEcCCcc
Q 001981 794 PEAQIVVSSLRSMEISSIM--VTGDNWATANAIAKEVGIGKVFAET--DPVG-----KANKIKELQLKGMTVAMVGDGIN 864 (986)
Q Consensus 794 ~~~~~~i~~l~~~gi~~~~--~Tgd~~~~a~~~a~~~gi~~~~~~~--~p~~-----K~~~v~~l~~~g~~v~~vGDg~n 864 (986)
....+.++.+++.|+++.+ ++-.+...... +...|.+-+.... .+.. -.+.++.+++..+.-.+++-|+|
T Consensus 90 ~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~ 168 (202)
T cd04726 90 STIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT 168 (202)
T ss_pred HHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcC
Confidence 3567889999999999885 67777777776 6677887544321 1111 13455555542333334444665
Q ss_pred --cHHHHHhCC-ceEEecC
Q 001981 865 --DSPALVAAD-VGMAIGA 880 (986)
Q Consensus 865 --D~~al~~A~-vgia~~~ 880 (986)
++..+.+++ -++.+|+
T Consensus 169 ~~~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 169 PDTLPEFKKAGADIVIVGR 187 (202)
T ss_pred HHHHHHHHhcCCCEEEEee
Confidence 444444443 2355553
No 347
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=25.29 E-value=9e+02 Score=26.24 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=63.7
Q ss_pred EEEEEecCCCChhHHHHHHHHHHCCC--------eEEEEcCCCHHHHHHHHHHcCCceEEEecCcccHHHHHHHHhHcCC
Q 001981 783 AGAFAVTDPVKPEAQIVVSSLRSMEI--------SSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGM 854 (986)
Q Consensus 783 ~G~i~~~d~~~~~~~~~i~~l~~~gi--------~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~~g~ 854 (986)
++++.-..--.+++.+.++.|+++-- .+.-+|-.++..++.+|.++.+--+...-....-.++.+--++.|.
T Consensus 160 l~~~tQTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSSNs~rL~eiA~~~g~ 239 (294)
T COG0761 160 LAFVTQTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSSNSNRLAEIAKRHGK 239 (294)
T ss_pred EEEEeeeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCccHHHHHHHHHHhCC
Confidence 45555555556788888888887633 1567788888889999998877656555444445556666667777
Q ss_pred EEEEEcCC-cccHHHHHh-CCceEEecCC
Q 001981 855 TVAMVGDG-INDSPALVA-ADVGMAIGAG 881 (986)
Q Consensus 855 ~v~~vGDg-~nD~~al~~-A~vgia~~~~ 881 (986)
....|.+. --|..-|+. -.|||.-|.+
T Consensus 240 ~aylId~~~ei~~~w~~~~~~VGvTAGAS 268 (294)
T COG0761 240 PAYLIDDAEEIDPEWLKGVKTVGVTAGAS 268 (294)
T ss_pred CeEEeCChHhCCHHHhcCccEEEEecCCC
Confidence 66777653 123333443 3477877743
No 348
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=24.74 E-value=2.4e+02 Score=32.90 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=46.9
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEec--CcccH-H--HHHHHHhHcCCEEEEE
Q 001981 796 AQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAET--DPVGK-A--NKIKELQLKGMTVAMV 859 (986)
Q Consensus 796 ~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~--~p~~K-~--~~v~~l~~~g~~v~~v 859 (986)
..+.=+.|++.|+++.+.+||+......++++++++.++... ++..+ . .+-..|.+.|-.+..+
T Consensus 57 L~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~~~~~v~~n~~~~~~~~~rD~al~~~l~~~gi~~~~~ 125 (461)
T COG0415 57 LQALQQSLAELGIPLLVREGDPEQVLPELAKQLAATTVFWNRDYEEWERQRDAALAQPLTEVGIAVHSF 125 (461)
T ss_pred HHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhCcceEEeeeeechhHHHHHHHHHHHHHhcCceEEEe
Confidence 444456778899999999999999999999999999888764 33222 2 2555666777554443
No 349
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=24.66 E-value=5.4e+02 Score=26.96 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=22.0
Q ss_pred HHHHHhHcCCEE-EEEcCCc-ccHHHHHhCCce
Q 001981 845 KIKELQLKGMTV-AMVGDGI-NDSPALVAADVG 875 (986)
Q Consensus 845 ~v~~l~~~g~~v-~~vGDg~-nD~~al~~A~vg 875 (986)
+++.+......+ +||||.. +|+.+.+++++-
T Consensus 197 ~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~ 229 (236)
T TIGR01460 197 ALNLLQARPERRDVMVGDNLRTDILGAKNAGFD 229 (236)
T ss_pred HHHHhCCCCccceEEECCCcHHHHHHHHHCCCc
Confidence 344443333444 9999998 899999999864
No 350
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=24.35 E-value=5.3e+02 Score=33.95 Aligned_cols=123 Identities=15% Similarity=0.229 Sum_probs=71.1
Q ss_pred hHHHHHHHhhccCCEEEEEeecC------------CCeEEEEeCCCC------CChhHHHHHHHhc--CCCc---ccccC
Q 001981 138 CSESVERAIEMVDGVKKAVVGVA------------LEEAKVHFDPNL------TDTDHIVEAIEDA--GFGA---DLISS 194 (986)
Q Consensus 138 C~~~ie~~l~~~~gV~~~~v~~~------------~~~~~v~~~~~~------~~~~~i~~~i~~~--Gy~~---~~~~~ 194 (986)
....+|+.+.+.++|.++..... .....|...+.. .+.+++.+.+++. .+.. ....+
T Consensus 589 ~~~~vE~~l~~~~~v~~~~s~~g~~~~~~~~~~~~~a~i~v~l~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~ 668 (1051)
T TIGR00914 589 MQQTLEKLIKSFPEVARVFAKTGTAEIATDPMPPNASDTYIILKPESQWPEGKKTKEDLIEEIQEATVRIPGNNYEFTQP 668 (1051)
T ss_pred HHHHHHHHHhcCCCeEEEEEeecCCccCCCCCCCcceEEEEEEeccccccccCCCHHHHHHHHHHHHhhCCCcceecccC
Confidence 56678888888888887664322 123445554421 2344554444331 1211 11000
Q ss_pred --------C-ccccceeeeecCCCCc---hhHHHHHHhhcCCCCeEEEEEecC--CCEEEEEeCCCC-----CChHHHHH
Q 001981 195 --------G-KDVNKVHLKLEGLNSS---EDATFVQNFLESTQGVSQVEIDLS--EHKVTVSYDPNL-----TGPRSIIQ 255 (986)
Q Consensus 195 --------~-~~~~~~~~~v~Gm~c~---~c~~~ie~~l~~~~gV~~~~vn~~--~~~~~v~~~~~~-----~~~~~i~~ 255 (986)
. .....+.+.+.|-+-. .-++.+++.|.++|||.+++.+.. ...+.|+.|+.. ++++++.+
T Consensus 669 ~~~~~~~~~~g~~~~i~i~l~G~d~~~L~~~a~~v~~~l~~~pgv~~v~~~~~~~~~e~~i~id~~~~~~~Glt~~~v~~ 748 (1051)
T TIGR00914 669 IQMRFNELISGVRSDVAVKVFGDDLDDLDATAEKISAVLKGVPGAADVKVEQTTGLPYLTVEIDREKAARYGLTVGDVQD 748 (1051)
T ss_pred hhhhHHhhccCCCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCCceeeeccccCCCceEEEEECHHHHHHcCCCHHHHHH
Confidence 0 0023478888885433 357789999999999999998764 456777777643 45555555
Q ss_pred HHHHh
Q 001981 256 YLEEA 260 (986)
Q Consensus 256 ~i~~~ 260 (986)
.++..
T Consensus 749 ~l~~~ 753 (1051)
T TIGR00914 749 TVATA 753 (1051)
T ss_pred HHHHH
Confidence 55544
No 351
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.31 E-value=8.9e+02 Score=25.88 Aligned_cols=123 Identities=18% Similarity=0.223 Sum_probs=71.7
Q ss_pred EEEecHHHHHhcCCCCChhhHHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEE-EcCCC-
Q 001981 740 VLVGNKRLMMAFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIM-VTGDN- 817 (986)
Q Consensus 740 ~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~-~Tgd~- 817 (986)
++++.-..+...| .++..++..+.|-. |++. -|-+-++..+.++.+++.|+..+. +|-..
T Consensus 93 vlm~Y~N~i~~~G------~e~f~~~~~~aGvd-----------Gvii-pDLp~ee~~~~~~~~~~~gl~~I~lvap~t~ 154 (258)
T PRK13111 93 VLMTYYNPIFQYG------VERFAADAAEAGVD-----------GLII-PDLPPEEAEELRAAAKKHGLDLIFLVAPTTT 154 (258)
T ss_pred EEEecccHHhhcC------HHHHHHHHHHcCCc-----------EEEE-CCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 4555544444443 23445555555643 3333 355568899999999999998655 77665
Q ss_pred HHHHHHHHHHcCCceEE-Ee--------cCcccHHHHHHHHhHcCCEEEEEcCCccc---HHHHHhCCceEEecC
Q 001981 818 WATANAIAKEVGIGKVF-AE--------TDPVGKANKIKELQLKGMTVAMVGDGIND---SPALVAADVGMAIGA 880 (986)
Q Consensus 818 ~~~a~~~a~~~gi~~~~-~~--------~~p~~K~~~v~~l~~~g~~v~~vGDg~nD---~~al~~A~vgia~~~ 880 (986)
....+.+++...=--++ +. -.|.+-.+.++.+++....-+++|-|+++ +..+...-=|+.+|+
T Consensus 155 ~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~ADGviVGS 229 (258)
T PRK13111 155 DERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAVADGVIVGS 229 (258)
T ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHhCCEEEEcH
Confidence 46667777665321222 11 12344556888888766666778999855 333333222455554
No 352
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=23.95 E-value=7.1e+02 Score=29.57 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=69.1
Q ss_pred hHHHHHHHHhccCcEEE-EEECCEEEEEEEecCCCChhHHHHHHHHHH-C-CCeEEEEcCCCH---HHHHHHHHHcCCce
Q 001981 759 VDDYMMKNEQLARTCVL-VAIDGRVAGAFAVTDPVKPEAQIVVSSLRS-M-EISSIMVTGDNW---ATANAIAKEVGIGK 832 (986)
Q Consensus 759 ~~~~~~~~~~~g~~~i~-va~~~~~~G~i~~~d~~~~~~~~~i~~l~~-~-gi~~~~~Tgd~~---~~a~~~a~~~gi~~ 832 (986)
+.+..+.+...+...+. +..+++++|++...|-++..... ..+++ . .+.|..+-|... ..+..+. +.|++.
T Consensus 180 l~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p--~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~-~ag~d~ 256 (495)
T PTZ00314 180 LEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYP--NASLDSNGQLLVGAAISTRPEDIERAAALI-EAGVDV 256 (495)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCc--hhhhccCCCEEEEEEECCCHHHHHHHHHHH-HCCCCE
Confidence 44555555555555444 44568999999999977654321 12332 2 456666777654 3334433 458887
Q ss_pred EEEecC---cccHHHHHHHHhHc-CCEEEEEcCCc--ccHHHHHhCCc
Q 001981 833 VFAETD---PVGKANKIKELQLK-GMTVAMVGDGI--NDSPALVAADV 874 (986)
Q Consensus 833 ~~~~~~---p~~K~~~v~~l~~~-g~~v~~vGDg~--nD~~al~~A~v 874 (986)
+.-... .....+.++.+++. +..-++.|+.. +|+..+..|++
T Consensus 257 i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGa 304 (495)
T PTZ00314 257 LVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGA 304 (495)
T ss_pred EEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCC
Confidence 776552 22335678888876 34566778775 58888888874
No 353
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=23.91 E-value=1.2e+03 Score=27.55 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCceEEEecC---cccHHHHHHHHhHcC-CEEEEEcCC--cccHHHHHhCC---ceEEecCCc
Q 001981 818 WATANAIAKEVGIGKVFAETD---PVGKANKIKELQLKG-MTVAMVGDG--INDSPALVAAD---VGMAIGAGT 882 (986)
Q Consensus 818 ~~~a~~~a~~~gi~~~~~~~~---p~~K~~~v~~l~~~g-~~v~~vGDg--~nD~~al~~A~---vgia~~~~~ 882 (986)
...++.+.+ .|.+.+.-+.+ |+.-.+.|+.+++.. ..-+++|.+ .+++..|..|+ |.|++|.|+
T Consensus 227 ~~ra~~Lv~-aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs 299 (475)
T TIGR01303 227 GGKAKALLD-AGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGA 299 (475)
T ss_pred HHHHHHHHH-hCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCc
Confidence 344444443 35555554443 233456777777652 344555644 45666666666 345555554
No 354
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=23.73 E-value=2.1e+02 Score=30.87 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=50.4
Q ss_pred CcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEe
Q 001981 771 RTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAE 836 (986)
Q Consensus 771 ~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~ 836 (986)
..++++-.|.+++.--.-..-..|.+.+.+.+||+.|-.+++=|=.+.+-+..-++++++..+|.-
T Consensus 122 phVIVfDlD~TLItd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ 187 (297)
T PF05152_consen 122 PHVIVFDLDSTLITDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFDI 187 (297)
T ss_pred CcEEEEECCCcccccCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccEE
Confidence 357788888887643222222458899999999999999999997788888899999999765543
No 355
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=23.62 E-value=2.1e+02 Score=23.18 Aligned_cols=52 Identities=17% Similarity=0.318 Sum_probs=36.7
Q ss_pred EEecCCCChhHHHHHHHHHhCCCCceEEEeeccCceEEEEeCCCCCCHHHHHHHHHHcCCCCC
Q 001981 54 FKIREIKCASCATSIESVLSNLNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAGFPVD 116 (986)
Q Consensus 54 ~~v~gm~C~~C~~~I~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~G~~~~ 116 (986)
+.+.|+.|+...-...+++ ++..- +.+.+..+.. .....+....+..||...
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~g---------~~l~v~~d~~-~s~~~i~~~~~~~G~~~~ 53 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEAG---------GEIEVLVDNE-VAKENVSRFAESRGYEVS 53 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCCC---------CEEEEEEcCh-hHHHHHHHHHHHcCCEEE
Confidence 4568999999999999999 55322 2334444433 445788888999999873
No 356
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.56 E-value=2.2e+02 Score=31.01 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=25.0
Q ss_pred cCCEEEEEcCCcc----cHHHHHhCC--ceEEecCCc--HHHHHhcCEEEe
Q 001981 852 KGMTVAMVGDGIN----DSPALVAAD--VGMAIGAGT--DVAIEAADIVLI 894 (986)
Q Consensus 852 ~g~~v~~vGDg~n----D~~al~~A~--vgia~~~~~--~~~~~~ad~vl~ 894 (986)
.|++|+.+|.|.. =+.+|...+ |.++-.... ......||+++.
T Consensus 163 ~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 163 EGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVV 213 (287)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEE
Confidence 4889999999852 122444444 444443322 223457999885
No 357
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=23.45 E-value=1.6e+02 Score=30.68 Aligned_cols=90 Identities=20% Similarity=0.349 Sum_probs=50.2
Q ss_pred CCChhHHHHHHHHHhC-----------CCCceEEEeeccCceEEEEeCCCCCCHHHHHHHHHHcCCCCCCC---------
Q 001981 59 IKCASCATSIESVLSN-----------LNGVESAVVSPLEGQAVVKFIPGLITAKRIKETVEEAGFPVDDF--------- 118 (986)
Q Consensus 59 m~C~~C~~~I~~~l~~-----------~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~v~~~G~~~~~~--------- 118 (986)
+.|.+|-.-+-+.|.+ ..||.-.+..-.++...+..+++ +..+-.+.+...||+-...
T Consensus 15 l~L~gCk~~Ly~gL~e~eANemlAlL~~~gI~A~K~~~~~g~~~l~Ve~~--~fa~Av~iL~~~GlPr~~f~~l~d~Fp~ 92 (246)
T COG4669 15 LLLTGCKVDLYTGLSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEES--DFAEAVEILNQNGLPRKKFTTLGDIFPK 92 (246)
T ss_pred HHHhcchHHHHcCCCHhHHHHHHHHHHHcCCcceeeccCCCceEEEEcHH--HHHHHHHHHHhcCCCCCCCCcHHHhCCc
Confidence 4678887443332222 34565555544555555554432 3344556677888865311
Q ss_pred ------CcccceEEEEeecCccChhhHHHHHHHhhccCCEEEEEee
Q 001981 119 ------PEQDIAVCRLRIKGMMCTSCSESVERAIEMVDGVKKAVVG 158 (986)
Q Consensus 119 ------~~~~~~~~~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~ 158 (986)
+.+|. .++ -..-.+.+|+.|++++||.+++|.
T Consensus 93 dgLVsSP~eEk--aR~------~~~~eQ~le~tLs~mDGVi~ArV~ 130 (246)
T COG4669 93 DGLVSSPTEEK--ARL------NYAKEQQLEQTLSKMDGVISARVH 130 (246)
T ss_pred ccccCCcHHHH--HHH------HHHHHHHHHHHHHhcCceEEEEEE
Confidence 11111 111 134567899999999999987764
No 358
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.32 E-value=4.6e+02 Score=27.95 Aligned_cols=38 Identities=16% Similarity=0.043 Sum_probs=18.1
Q ss_pred HHHHHHHHCCCeEEEEcC-CCHHHHHHHHHHcCCceEEE
Q 001981 798 IVVSSLRSMEISSIMVTG-DNWATANAIAKEVGIGKVFA 835 (986)
Q Consensus 798 ~~i~~l~~~gi~~~~~Tg-d~~~~a~~~a~~~gi~~~~~ 835 (986)
+.++.+.+.++.=+++++ +........+++.|+..++.
T Consensus 47 ~~~~~~~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~ 85 (283)
T cd06279 47 SDSALVVSALVDGFIVYGVPRDDPLVAALLRRGLPVVVV 85 (283)
T ss_pred HHHHHHHhcCCCEEEEeCCCCChHHHHHHHHcCCCEEEE
Confidence 455566666666444443 22222333445566654433
No 359
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=22.67 E-value=1.6e+02 Score=29.40 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=38.3
Q ss_pred hhHHHHHHhhcCCCCeEEEEEecCCCEEEEEeCCC--CCChHHHHHHHHHh
Q 001981 212 EDATFVQNFLESTQGVSQVEIDLSEHKVTVSYDPN--LTGPRSIIQYLEEA 260 (986)
Q Consensus 212 ~c~~~ie~~l~~~~gV~~~~vn~~~~~~~v~~~~~--~~~~~~i~~~i~~~ 260 (986)
.-+..|++.+.++|||.++.|=.....+.|-++.. ....+++.+.+++.
T Consensus 75 ~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Vav~~~~~~~~~~~i~~~V~~~ 125 (177)
T PF09580_consen 75 QLADRIANRVKKVPGVEDATVVVTDDNAYVAVDLDFNRFNTKKIKKKVEKA 125 (177)
T ss_pred HHHHHHHHHHhcCCCceEEEEEEECCEEEEEEEecccccchhHHHHHHHHH
Confidence 46789999999999999999999999999998876 34445555555443
No 360
>PRK10481 hypothetical protein; Provisional
Probab=22.44 E-value=9e+02 Score=25.26 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=64.0
Q ss_pred CCEEEEEecHHHHHhcCCCCChhhHHHHHHHHhccCcEEEEEECCEEEEEEEecC---CCChhHHHHHHHHHHCCCeEEE
Q 001981 736 GDRTVLVGNKRLMMAFHVPVGPEVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTD---PVKPEAQIVVSSLRSMEISSIM 812 (986)
Q Consensus 736 ~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d---~~~~~~~~~i~~l~~~gi~~~~ 812 (986)
+|..+.++.+.... .+++.+.+++++|...+.++.-+.|-|+-..+. .+.......+..+.. |-++.+
T Consensus 64 dG~~v~~s~~~v~~--------~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i~~lv~Al~~-g~riGV 134 (224)
T PRK10481 64 DGQQVHVSKQKVER--------DLQSVIEVLDNQGYDVILLLCTGEFPSLTARNAILLEPSRILPPLVAAIVG-GHQVGV 134 (224)
T ss_pred CCCEEEEEHHHHHH--------HHHHHHHHHHhCCCCEEEEEecCCCCCccccCccccCchhhHHHHHHHhcC-CCeEEE
Confidence 56677777665532 366778888999999988888777666555333 334455555555543 467888
Q ss_pred EcCCCHHHHH---HHHHHcCCceEEEecCc-----ccHHHHHHHHhHcCC
Q 001981 813 VTGDNWATAN---AIAKEVGIGKVFAETDP-----VGKANKIKELQLKGM 854 (986)
Q Consensus 813 ~Tgd~~~~a~---~~a~~~gi~~~~~~~~p-----~~K~~~v~~l~~~g~ 854 (986)
+|-......+ .+.+ .|++..+...+| +...+..+.|+..|-
T Consensus 135 itP~~~qi~~~~~kw~~-~G~~v~~~~aspy~~~~~~l~~aa~~L~~~ga 183 (224)
T PRK10481 135 IVPVEEQLAQQAQKWQV-LQKPPVFALASPYHGSEEELIDAGKELLDQGA 183 (224)
T ss_pred EEeCHHHHHHHHHHHHh-cCCceeEeecCCCCCCHHHHHHHHHHhhcCCC
Confidence 8765444332 2332 266655555333 233445555555443
No 361
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=22.30 E-value=1.8e+02 Score=31.41 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=24.8
Q ss_pred HHHHHhHcCCEEEEEcCC-cccHHHHHhCCceEE
Q 001981 845 KIKELQLKGMTVAMVGDG-INDSPALVAADVGMA 877 (986)
Q Consensus 845 ~v~~l~~~g~~v~~vGDg-~nD~~al~~A~vgia 877 (986)
+++.+....++++||||+ ..|+.+-+++++.-.
T Consensus 199 al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~ 232 (269)
T COG0647 199 ALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTL 232 (269)
T ss_pred HHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEE
Confidence 444455555589999999 569999999997733
No 362
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=22.25 E-value=3.1e+02 Score=28.85 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCHHHH----------HHHHHHcCCceE-----EEecCcccHHHHHHHHhHcCCEEE
Q 001981 794 PEAQIVVSSLRSMEISSIMVTGDNWATA----------NAIAKEVGIGKV-----FAETDPVGKANKIKELQLKGMTVA 857 (986)
Q Consensus 794 ~~~~~~i~~l~~~gi~~~~~Tgd~~~~a----------~~~a~~~gi~~~-----~~~~~p~~K~~~v~~l~~~g~~v~ 857 (986)
.-.++-|+.+|++|+.+ .||...... ...++++|++.+ +-.+++++|.++|+..++.|-+|.
T Consensus 41 ~~l~eki~la~~~~V~v--~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 41 DIVKEKIEMYKDYGIKV--YPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred HHHHHHHHHHHHcCCeE--eCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 34888899999988875 478632222 236788898754 455788999999999998875543
No 363
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=22.11 E-value=3.9e+02 Score=27.71 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHCCCeEEEEcCCCH-----HHHHHHHHHcCCceEEEecCcccHHHHHHHHhHcCCEEEEE
Q 001981 794 PEAQIVVSSLRSMEISSIMVTGDNW-----ATANAIAKEVGIGKVFAETDPVGKANKIKELQLKGMTVAMV 859 (986)
Q Consensus 794 ~~~~~~i~~l~~~gi~~~~~Tgd~~-----~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~l~~~g~~v~~v 859 (986)
++..++++++++.|++ .+++|+.. .....+++++|+. +++-+--.+|.++++.+...|-+...+
T Consensus 73 ~~l~~~l~~~~~~g~~-~vv~G~i~sd~~~~~~e~v~~~~gl~-~~~PLw~~~~~el~~~~~~~G~~~~i~ 141 (218)
T TIGR03679 73 EDLKGALKELKREGVE-GIVTGAIASRYQKSRIERICEELGLK-VFAPLWGRDQEEYLRELVERGFRFIIV 141 (218)
T ss_pred HHHHHHHHHHHHcCCC-EEEECCcccHhHHHHHHHHHHhCCCe-EEeehhcCCHHHHHHHHHHCCCEEEEE
Confidence 3477788888888876 56677764 5566888999984 455555578899999999988765443
No 364
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=22.04 E-value=7.7e+02 Score=24.28 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=53.0
Q ss_pred hHHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCH-HHHHHHHHHc---CCceEE
Q 001981 759 VDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNW-ATANAIAKEV---GIGKVF 834 (986)
Q Consensus 759 ~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~-~~a~~~a~~~---gi~~~~ 834 (986)
+......+...|.-++.-++...+ . ....++.|+..|++++...|+.. ..+....+.+ .++.+.
T Consensus 43 ~~~i~~~ls~~G~i~~~R~Y~~a~----------a--~~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~v 110 (160)
T TIGR00288 43 LDEIREILSEYGDIKIGKVLLNQY----------A--SDKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVA 110 (160)
T ss_pred HHHHHHHHHhcCCeEEEEEEechh----------c--cHHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEE
Confidence 445556667777655544432211 0 12457889999999988888532 2222222222 233332
Q ss_pred EecCcccHHHHHHHHhHcCCEEEEEcC
Q 001981 835 AETDPVGKANKIKELQLKGMTVAMVGD 861 (986)
Q Consensus 835 ~~~~p~~K~~~v~~l~~~g~~v~~vGD 861 (986)
---...+-..+++.+++.|.+|..+|-
T Consensus 111 LvSgD~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 111 LVTRDADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred EEeccHhHHHHHHHHHHCCCEEEEEeC
Confidence 222345667789999999999988884
No 365
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=21.98 E-value=2.9e+02 Score=27.36 Aligned_cols=57 Identities=25% Similarity=0.382 Sum_probs=39.1
Q ss_pred EEEEECCEEEEEEEecCCCChhH-------------------------HHHHHHHHHCCCeEEEEcC--CCHHHHHHHHH
Q 001981 774 VLVAIDGRVAGAFAVTDPVKPEA-------------------------QIVVSSLRSMEISSIMVTG--DNWATANAIAK 826 (986)
Q Consensus 774 i~va~~~~~~G~i~~~d~~~~~~-------------------------~~~i~~l~~~gi~~~~~Tg--d~~~~a~~~a~ 826 (986)
.++..|++++|+|.++-.+.... +.++++.|+.||+-+++|- ||....+-|-.
T Consensus 72 ~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI~~ 151 (174)
T COG3981 72 WAVDEDGQIVGFINLRHQLNDFLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVIEA 151 (174)
T ss_pred EEEecCCcEEEEEEeeeecchHHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHHHh
Confidence 34444789999999988776554 4467777888888777774 45655556655
Q ss_pred HcCC
Q 001981 827 EVGI 830 (986)
Q Consensus 827 ~~gi 830 (986)
.-|+
T Consensus 152 NGGi 155 (174)
T COG3981 152 NGGI 155 (174)
T ss_pred cCCE
Confidence 5554
No 366
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=21.87 E-value=3.8e+02 Score=26.89 Aligned_cols=117 Identities=14% Similarity=0.161 Sum_probs=62.8
Q ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-----CCceE--EEecCcccHHHHHHHHhHcCCEEEEEcCCcccHHHH
Q 001981 797 QIVVSSLRSMEISSIMVTGDNWATANAIAKEV-----GIGKV--FAETDPVGKANKIKELQLKGMTVAMVGDGINDSPAL 869 (986)
Q Consensus 797 ~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~-----gi~~~--~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al 869 (986)
.+.++...+.|.++.++ |..+..+...++.+ |+.-+ +.-..|++..++++.+.+.+..+++||=|.-=-+.+
T Consensus 38 ~~l~~~~~~~~~~vfll-G~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE~~ 116 (177)
T TIGR00696 38 EELCQRAGKEKLPIFLY-GGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEIW 116 (177)
T ss_pred HHHHHHHHHcCCeEEEE-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhHHH
Confidence 34455566677777777 44444544444443 23211 122345566678888888888888998885533332
Q ss_pred H-------hCCceEEecCCcHHHH---HhcCEEEeCCChhHHHHHHHHHHHHHHH
Q 001981 870 V-------AADVGMAIGAGTDVAI---EAADIVLIKSSLEDVVTAIDLSRKTISR 914 (986)
Q Consensus 870 ~-------~A~vgia~~~~~~~~~---~~ad~vl~~~~~~~l~~~i~~~r~~~~~ 914 (986)
- ...+.+++|.+-|... .-|.-.+.+-+++.+..++.+=|+..+.
T Consensus 117 ~~~~~~~~~~~v~~gvGg~fd~~aG~~~rAP~w~~~~gLEWlyRl~~eP~R~~R~ 171 (177)
T TIGR00696 117 MRNHRHLKPDAVMIGVGGSFDVFSGLVKRAPRWLMRLGLEWLYRLRMEPWRWKRM 171 (177)
T ss_pred HHHhHHhCCCcEEEEeceeeeecccCcCcCCHHHHHhCchHHHHhhhCcHHHHHh
Confidence 1 1234555554322211 1222222334577777777776665443
No 367
>PRK09577 multidrug efflux protein; Reviewed
Probab=21.84 E-value=7.4e+02 Score=32.57 Aligned_cols=125 Identities=16% Similarity=0.166 Sum_probs=71.6
Q ss_pred HHHHHHHHHhCCCCceEEEeec--cCceEEEEeCCCCC---CHHHHHHHHHHcC--CCCC-C-C-----CcccceEEEEe
Q 001981 64 CATSIESVLSNLNGVESAVVSP--LEGQAVVKFIPGLI---TAKRIKETVEEAG--FPVD-D-F-----PEQDIAVCRLR 129 (986)
Q Consensus 64 C~~~I~~~l~~~~gv~~~~v~~--~~~~~~v~~~~~~~---~~~~i~~~v~~~G--~~~~-~-~-----~~~~~~~~~~~ 129 (986)
-...+|++++.++|+.++.-.- ......+.++.+.. ...++.+.+.... ++.+ . . .........+.
T Consensus 61 Vt~plE~~L~~v~gv~~i~S~S~~G~s~I~v~f~~g~d~~~a~~~V~~~v~~~~~~LP~~~~~~~~~~~~~~~~~~~~~~ 140 (1032)
T PRK09577 61 VTALIEREMNGAPGLLYTSATSSAGQASLSLTFKQGVNADLAAVEVQNRLKTVEARLPEPVRRDGIQVEKAADNIQLIVS 140 (1032)
T ss_pred HHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCCChHHHHHHHHHHHHHHHHhCCcccccCCceEeccCCCceEEEE
Confidence 3456888899999998866543 33445555654421 1234555555432 2211 1 0 00011112233
Q ss_pred ecCc---cC-h---h-hHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCC-----CChhHHHHHHHhcCCC
Q 001981 130 IKGM---MC-T---S-CSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNL-----TDTDHIVEAIEDAGFG 188 (986)
Q Consensus 130 i~gm---~C-~---~-C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~-----~~~~~i~~~i~~~Gy~ 188 (986)
+.+- .- . . -...++..|++++||.++.+.-....+.|..||.+ ++..++.++++..+.+
T Consensus 141 l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V~~~l~~~n~~ 212 (1032)
T PRK09577 141 LTSDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIASAVRAHNAR 212 (1032)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 3221 11 0 1 13578999999999999999876556777777753 5778899999876543
No 368
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=21.64 E-value=4.4e+02 Score=23.98 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=13.5
Q ss_pred HHHHHHhhhHHHHHHHHhccCCCeEEEEE
Q 001981 414 YLEVVAKGKTSDALAKLTDLAPDTAHLLT 442 (986)
Q Consensus 414 ~le~~~~~k~~~~l~~l~~~~p~~~~v~~ 442 (986)
++-.+.++|.++..+++.+....--+|++
T Consensus 33 f~~~RpqkK~~k~~~~~~~~Lk~Gd~VvT 61 (106)
T PRK05585 33 FLIIRPQQKRQKEHKKMLSSLAKGDEVVT 61 (106)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 34444444444555555444444444543
No 369
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=21.56 E-value=2.6e+02 Score=24.63 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHCC--CeEEEEcCCCHHHHHHHHHHcCCceEEEecCcccHHHHHHH
Q 001981 794 PEAQIVVSSLRSME--ISSIMVTGDNWATANAIAKEVGIGKVFAETDPVGKANKIKE 848 (986)
Q Consensus 794 ~~~~~~i~~l~~~g--i~~~~~Tgd~~~~a~~~a~~~gi~~~~~~~~p~~K~~~v~~ 848 (986)
.+..+.++.+++.+ .+++++|+........-+.+.|.+.+... |-...++.+.
T Consensus 56 ~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~k--p~~~~~l~~~ 110 (112)
T PF00072_consen 56 GDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSK--PFSPEELRAA 110 (112)
T ss_dssp SBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEES--SSSHHHHHHH
T ss_pred ccccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEEC--CCCHHHHHHh
Confidence 56778899998865 78999998887777777779999887765 4444444443
No 370
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=21.56 E-value=6.6e+02 Score=24.72 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=54.2
Q ss_pred CCCChhhHHHHHHHH-hccCcEEEEEECCE--EEEEEEecCCCChh------------------------HHHHHHHHHH
Q 001981 753 VPVGPEVDDYMMKNE-QLARTCVLVAIDGR--VAGAFAVTDPVKPE------------------------AQIVVSSLRS 805 (986)
Q Consensus 753 ~~~~~~~~~~~~~~~-~~g~~~i~va~~~~--~~G~i~~~d~~~~~------------------------~~~~i~~l~~ 805 (986)
.++++++.....++- ..+...-+++.|+. .+|.+.-.++...+ ++.+|+.+++
T Consensus 36 k~lsepyS~~tyrYf~~~wp~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~ 115 (165)
T KOG3139|consen 36 KDLSEPYSIYTYRYFVPNWPCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRS 115 (165)
T ss_pred hhcCchhHHHHHHhcccCCceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHH
Confidence 345555544444432 33444444555533 47777776665544 5788999999
Q ss_pred CCCe-EEEEcCCCHHHHHHHHHHcCCc
Q 001981 806 MEIS-SIMVTGDNWATANAIAKEVGIG 831 (986)
Q Consensus 806 ~gi~-~~~~Tgd~~~~a~~~a~~~gi~ 831 (986)
.|.. |++=|......|.++-+.+|+.
T Consensus 116 ~g~~eVvLeTe~~n~~A~~LY~sLGF~ 142 (165)
T KOG3139|consen 116 RGYSEVVLETEVTNLSALRLYESLGFK 142 (165)
T ss_pred CCCcEEEEeccccchHHHHHHHhcCce
Confidence 9985 7788999999999999999984
No 371
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=21.48 E-value=1.7e+02 Score=31.88 Aligned_cols=78 Identities=17% Similarity=0.311 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCc-----------------------eEEEecCcccHHHHHHH
Q 001981 793 KPEAQIVVSSLRSMEISSIMVTGDNWATANAIA-KEVGIG-----------------------KVFAETDPVGKANKIKE 848 (986)
Q Consensus 793 ~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a-~~~gi~-----------------------~~~~~~~p~~K~~~v~~ 848 (986)
||.=.+.|+++|+.|.++.+++--.-..+...+ ...|++ ++.+++-|.+..+.-+.
T Consensus 166 RpRH~~lI~eiR~~Gari~Li~DGDVa~ai~~~~~~s~vD~~~GiGGaPEGVlaAaAlkclGG~mqgRL~~~~~~e~~r~ 245 (319)
T PRK09479 166 RPRHEELIAEIREAGARVKLISDGDVAGAIATAFPDTGVDILMGIGGAPEGVLAAAALKCLGGEMQGRLLPRNEEERARA 245 (319)
T ss_pred CchHHHHHHHHHHcCCeEEEeccccHHHHHHHhcCCCCeeEEEEcCcChHHHHHHHHHHhcCceeEEeECCCCHHHHHHH
Confidence 344567888899999999888843443343333 334553 56667766554333222
Q ss_pred HhHc----------------CCEEEEEcCCcccHHHHHh
Q 001981 849 LQLK----------------GMTVAMVGDGINDSPALVA 871 (986)
Q Consensus 849 l~~~----------------g~~v~~vGDg~nD~~al~~ 871 (986)
++. |+.|+|+.-|+.|-..|+-
T Consensus 246 -~~~Gi~D~~kv~~~~dLv~gddv~F~ATGVTdG~lL~G 283 (319)
T PRK09479 246 -KKMGITDLDKVLTLDDLVRGDDVIFAATGVTDGDLLKG 283 (319)
T ss_pred -HHcCCcChhheeEHHHcccCCCEEEEEeCCCCCCCcCC
Confidence 222 4579999999999877763
No 372
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=21.46 E-value=3.1e+02 Score=29.64 Aligned_cols=101 Identities=10% Similarity=0.057 Sum_probs=62.6
Q ss_pred HHHHhcCCCCChhhHHHHHHHHhc----cCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHH
Q 001981 746 RLMMAFHVPVGPEVDDYMMKNEQL----ARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATA 821 (986)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~----g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a 821 (986)
+|+++.+-+ +.+.+.+++.++.. .++...+-+++..+ -.++..+.....|..|++.|++++++-|-.+...
T Consensus 7 ~~~~~~~~~-~~e~~~~l~~f~~~~~~~~~~f~VIK~GG~~~----~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~ 81 (271)
T cd04236 7 AFLHQKGGD-PREARYWLTQFQIAMPNDWPAFAVLEVDHSVF----RSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDG 81 (271)
T ss_pred HHHHHhCCC-HHHHHHHHHHhhccCCCCCCCEEEEEEChhhh----cCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHh
Confidence 344444322 33456666666653 46666666666544 1345568889999999999999999999877655
Q ss_pred HHHHHHcCCceEEEec-CcccHHHHHHHHhHcCC
Q 001981 822 NAIAKEVGIGKVFAET-DPVGKANKIKELQLKGM 854 (986)
Q Consensus 822 ~~~a~~~gi~~~~~~~-~p~~K~~~v~~l~~~g~ 854 (986)
+... +..-...+. .-+.-..++..+++.|-
T Consensus 82 ~~l~---~~~~~~~~~v~~~~n~~Lv~~L~~~G~ 112 (271)
T cd04236 82 TNMS---DLELQAARSRLVKDCKTLVEALQANSA 112 (271)
T ss_pred hhhc---CCcchheehhHHHHHHHHHHHHHhCCC
Confidence 4444 332222221 11455678888888753
No 373
>PRK13670 hypothetical protein; Provisional
Probab=21.28 E-value=6.6e+02 Score=28.71 Aligned_cols=91 Identities=15% Similarity=0.224 Sum_probs=67.0
Q ss_pred EEEEEEEecCCCChhHHHHHHHHHH---CCCeEEEEcCC----------CHHHHHHHHHHcCCceE------EEecCccc
Q 001981 781 RVAGAFAVTDPVKPEAQIVVSSLRS---MEISSIMVTGD----------NWATANAIAKEVGIGKV------FAETDPVG 841 (986)
Q Consensus 781 ~~~G~i~~~d~~~~~~~~~i~~l~~---~gi~~~~~Tgd----------~~~~a~~~a~~~gi~~~------~~~~~p~~ 841 (986)
+.+|+|+=-|++-.|=...|+++++ .|..+++++|+ +...-..++.++|+|.+ |+..+|++
T Consensus 2 k~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qrg~p~i~~~~~R~~~a~~~GvD~vielpf~~a~~sae~ 81 (388)
T PRK13670 2 KVTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQRGEPAIVDKWTRAKMALENGVDLVVELPFLYSVQSADF 81 (388)
T ss_pred ceeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCCCCCCCCCHHHHHHHHHHcCCCEEEEeCCchHhCCHHH
Confidence 5688999899999998888887765 37778777876 45556788999999855 45566766
Q ss_pred HHH-HHHHHhHcCCEEEEEcCCcccHHHHHh
Q 001981 842 KAN-KIKELQLKGMTVAMVGDGINDSPALVA 871 (986)
Q Consensus 842 K~~-~v~~l~~~g~~v~~vGDg~nD~~al~~ 871 (986)
-.+ .|+.|...|-..+.+|....|...|+.
T Consensus 82 F~~~aV~iL~~l~v~~lv~G~e~g~~~~L~~ 112 (388)
T PRK13670 82 FAEGAVSILDALGVDSLVFGSESGDIEDFQK 112 (388)
T ss_pred HHHhHHHHHHHcCCCEEEEcCCCCCHHHHHH
Confidence 554 355566567778899987777766654
No 374
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=21.23 E-value=1.7e+02 Score=22.81 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=28.6
Q ss_pred cCCCeEEEEEecCCCCeeeEEEeeC-CCcCCCcEEEEcCCCcccc
Q 001981 433 LAPDTAHLLTLDGEGNVISEMDINT-QLMQKNDIIKILPGEKVPV 476 (986)
Q Consensus 433 ~~p~~~~v~~~~r~g~~~~~~~i~~-~~l~~GDii~v~~Ge~IPa 476 (986)
...+++.|++ .|| +...|+. .+.++||.|.+.+.++.+.
T Consensus 3 i~~~~aiVlT--~dG---eF~~ik~~~~~~vG~eI~~~~~~~~~~ 42 (56)
T PF12791_consen 3 IKKKYAIVLT--PDG---EFIKIKRKPGMEVGQEIEFDEKDIINK 42 (56)
T ss_pred CcCCEEEEEc--CCC---cEEEEeCCCCCcccCEEEEechhhccc
Confidence 3456778886 678 6666643 3699999999999887654
No 375
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.03 E-value=3.2e+02 Score=29.73 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=29.4
Q ss_pred HHHHHHhH-----cCCEEEEEcCCcc----cHHHHHhCCceE--EecCCcH--HHHHhcCEEEeC
Q 001981 844 NKIKELQL-----KGMTVAMVGDGIN----DSPALVAADVGM--AIGAGTD--VAIEAADIVLIK 895 (986)
Q Consensus 844 ~~v~~l~~-----~g~~v~~vGDg~n----D~~al~~A~vgi--a~~~~~~--~~~~~ad~vl~~ 895 (986)
.+++.|+. .|++|+.||.+.. =+.+|.+.+-.+ +-....+ .....||+++..
T Consensus 145 av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~~L~~~~~~ADIvV~A 209 (288)
T PRK14171 145 GCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKADIVVAA 209 (288)
T ss_pred HHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEc
Confidence 34555544 3789999999833 123444444444 4433332 234579998874
No 376
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=20.68 E-value=5.3e+02 Score=28.42 Aligned_cols=91 Identities=18% Similarity=0.292 Sum_probs=50.9
Q ss_pred EEEeecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHh-cCCCc--ccccCCcccccee
Q 001981 126 CRLRIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIED-AGFGA--DLISSGKDVNKVH 202 (986)
Q Consensus 126 ~~~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~-~Gy~~--~~~~~~~~~~~~~ 202 (986)
+++.++.-.-..-...+++.+++.+||.+++.- +.++..+.+++ .|++. ...+..+-+..+.
T Consensus 68 i~vyl~~~~~~~~~~~l~~~L~~~~~V~~v~~v---------------skeeal~~l~~~~g~~~~l~~l~~nPLP~si~ 132 (309)
T PRK11026 68 LTVYLDKTLDDDAANAVVEQLKAEDGVEKVNYL---------------SREEALGEFRNWSGFGGALDMLEENPLPAVAI 132 (309)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCCcceEEEE---------------CHHHHHHHHHHhhCchHHHhhCcCCCCCCeEE
Confidence 444444333444556899999999999987642 23333333322 34321 1111111133344
Q ss_pred eeec-CCCCchhHHHHHHhhcCCCCeEEEE
Q 001981 203 LKLE-GLNSSEDATFVQNFLESTQGVSQVE 231 (986)
Q Consensus 203 ~~v~-Gm~c~~c~~~ie~~l~~~~gV~~~~ 231 (986)
+++. +..-+.-...+.+.+++.|||.+++
T Consensus 133 V~~~~~~~~~~~~~~i~~~l~~~~~V~~v~ 162 (309)
T PRK11026 133 IIPKLDFQSSEKLNTLRDRLAQIKGVDEVR 162 (309)
T ss_pred EEecCCCCCHHHHHHHHHHHhcCCCCceee
Confidence 4443 4445667788888999999987754
No 377
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=20.48 E-value=1.9e+02 Score=31.36 Aligned_cols=79 Identities=18% Similarity=0.321 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCc-----------------------eEEEecCcccHHHHHHH
Q 001981 793 KPEAQIVVSSLRSMEISSIMVTGDNWATANAIA-KEVGIG-----------------------KVFAETDPVGKANKIKE 848 (986)
Q Consensus 793 ~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a-~~~gi~-----------------------~~~~~~~p~~K~~~v~~ 848 (986)
||.=.+.|+++|+.|.++.+++--.-..+...+ ..-|++ ++.+++-|.+..+.-+.
T Consensus 163 RpRH~~lI~eiR~~Gari~Li~DGDV~~ai~~~~~~s~vD~~~GiGGaPEGVlaAaAlkclGG~~qgrL~~~~~~e~~r~ 242 (309)
T cd01516 163 RPRHAALIEEIREAGARIKLIPDGDVAAAIATALPGSGVDVLMGIGGAPEGVLAAAALKCLGGEMQGRLLPRNEEERARA 242 (309)
T ss_pred CchHHHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEECCCChHHHHHHHHHHhCCceeEEEECCCCHHHHHHH
Confidence 344567888888888888888843333333333 334553 56677766554333222
Q ss_pred HhH---------------cCCEEEEEcCCcccHHHHHh
Q 001981 849 LQL---------------KGMTVAMVGDGINDSPALVA 871 (986)
Q Consensus 849 l~~---------------~g~~v~~vGDg~nD~~al~~ 871 (986)
.+. .|+.|+|+.-|+.|...|+-
T Consensus 243 ~~~Gi~D~~ki~~~ddLv~gd~v~FaATGvTdG~lL~G 280 (309)
T cd01516 243 REMGITDPNKILTLDDLVRGDDVVFAATGITDGELLKG 280 (309)
T ss_pred HHcCCCChhheeEHHHcccCCCEEEEEeCCCCCCccCC
Confidence 110 15678999999988777763
No 378
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=20.33 E-value=6.5e+02 Score=27.09 Aligned_cols=88 Identities=17% Similarity=0.228 Sum_probs=59.9
Q ss_pred HHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCce-EEEecCcc-
Q 001981 763 MMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGK-VFAETDPV- 840 (986)
Q Consensus 763 ~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~-~~~~~~p~- 840 (986)
+...-..|..+-+|+. .|+=.+.|| =.+.++.++++||+|..+-|-+...+.-++.-+.-+. .|....|.
T Consensus 70 li~~l~~g~~valVSD----AG~P~ISDP----G~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SGl~~~~F~F~GFLP~k 141 (275)
T COG0313 70 LIPLLKKGKSVALVSD----AGTPLISDP----GYELVRAAREAGIRVVPLPGPSALITALSASGLPSQRFLFEGFLPRK 141 (275)
T ss_pred HHHHHhcCCeEEEEec----CCCCcccCc----cHHHHHHHHHcCCcEEecCCccHHHHHHHHcCCCCCCeeEeccCCCC
Confidence 3444556777777765 355566777 4578899999999999999999988888876655543 44555553
Q ss_pred --cHHHHHHHHhHcCCEEEE
Q 001981 841 --GKANKIKELQLKGMTVAM 858 (986)
Q Consensus 841 --~K~~~v~~l~~~g~~v~~ 858 (986)
++.+.++.+++..+..++
T Consensus 142 ~~~R~~~l~~l~~~~~t~If 161 (275)
T COG0313 142 SKERRKRLEALANEPRTLIF 161 (275)
T ss_pred ccHHHHHHHHHHhcCCeEEE
Confidence 455566666665554333
No 379
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=20.27 E-value=3.7e+02 Score=23.20 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=36.0
Q ss_pred hhHHHHHHHHhccCcEEEEEE-CCEEEEEEEecC----------CCChhHHHHHHHHHHCCCeEE
Q 001981 758 EVDDYMMKNEQLARTCVLVAI-DGRVAGAFAVTD----------PVKPEAQIVVSSLRSMEISSI 811 (986)
Q Consensus 758 ~~~~~~~~~~~~g~~~i~va~-~~~~~G~i~~~d----------~~~~~~~~~i~~l~~~gi~~~ 811 (986)
.+.+....+...+.+.+.|.. +++++|++...| .......++++.+++.+++..
T Consensus 11 ~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l 75 (96)
T cd04614 11 PLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKSEVVTATKRTTVSECAQKMKRNRIEQI 75 (96)
T ss_pred cHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCCCcEEecCCCCHHHHHHHHHHhCCCee
Confidence 345555566556666666554 689999998777 445556777777777777633
No 380
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=20.19 E-value=9.1e+02 Score=26.86 Aligned_cols=105 Identities=23% Similarity=0.220 Sum_probs=69.0
Q ss_pred hhHHHHHHHHhccCcEEEEEECCEEEEEEEecCCCChhHHHHHHHH-HHCCCeEEE-EcCCCHH----HHHHHHHHcCCc
Q 001981 758 EVDDYMMKNEQLARTCVLVAIDGRVAGAFAVTDPVKPEAQIVVSSL-RSMEISSIM-VTGDNWA----TANAIAKEVGIG 831 (986)
Q Consensus 758 ~~~~~~~~~~~~g~~~i~va~~~~~~G~i~~~d~~~~~~~~~i~~l-~~~gi~~~~-~Tgd~~~----~a~~~a~~~gi~ 831 (986)
.+.+....+.++|++++..| .|..|.++.+-++.. ++.|++++- -.|..+. .|..-|+.=|+|
T Consensus 155 TIaKLA~~l~~~g~~VllaA-----------~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~D 223 (340)
T COG0552 155 TIAKLAKYLKQQGKSVLLAA-----------GDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGID 223 (340)
T ss_pred HHHHHHHHHHHCCCeEEEEe-----------cchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCCC
Confidence 35566777889999987666 688898888877665 445777665 2243333 234566777888
Q ss_pred eEEEecC--cccHHHHHHHHhHc-----------CCEEEEEcCCcccHHHHHhCC
Q 001981 832 KVFAETD--PVGKANKIKELQLK-----------GMTVAMVGDGINDSPALVAAD 873 (986)
Q Consensus 832 ~~~~~~~--p~~K~~~v~~l~~~-----------g~~v~~vGDg~nD~~al~~A~ 873 (986)
.+..+-. -+.|..++..|++- .+.++++-|+..=-.++.||-
T Consensus 224 vvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk 278 (340)
T COG0552 224 VVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAK 278 (340)
T ss_pred EEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHH
Confidence 7776532 24566666665532 466889988866656666654
No 381
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=20.18 E-value=2.8e+02 Score=22.76 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=39.3
Q ss_pred EeecCccChhhHHHHHHHhhccCCEEEEEeecCCCeEEEEeCCCCCChhHHHHHHHhcCCCccc
Q 001981 128 LRIKGMMCTSCSESVERAIEMVDGVKKAVVGVALEEAKVHFDPNLTDTDHIVEAIEDAGFGADL 191 (986)
Q Consensus 128 ~~i~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 191 (986)
+.+.|+.|+.-.-+..+++.+++. .+.+.|..+.+ ...+.+....+..||+...
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~-~a~~di~~~~~~~G~~~~~ 55 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDP-GFARDAQAWCKSTGNTLIS 55 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCc-cHHHHHHHHHHHcCCEEEE
Confidence 446799999999999999988762 22344444433 3678889999999998753
No 382
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=20.13 E-value=1.3e+03 Score=30.50 Aligned_cols=122 Identities=13% Similarity=0.163 Sum_probs=71.7
Q ss_pred HHHHHHHHHhCCCCceEEEeecc------------CceEEEEeCCC------CCCHHHHHHHHHHc--CCC-----CCCC
Q 001981 64 CATSIESVLSNLNGVESAVVSPL------------EGQAVVKFIPG------LITAKRIKETVEEA--GFP-----VDDF 118 (986)
Q Consensus 64 C~~~I~~~l~~~~gv~~~~v~~~------------~~~~~v~~~~~------~~~~~~i~~~v~~~--G~~-----~~~~ 118 (986)
....+|+.+.+.++|.+...... .....+...+. ..+.+++.+.+.+. .+. ....
T Consensus 589 ~~~~vE~~l~~~~~v~~~~s~~g~~~~~~~~~~~~~a~i~v~l~~~~~~~~~~~~~~~~~~~l~~~l~~~p~~~~~~~~~ 668 (1051)
T TIGR00914 589 MQQTLEKLIKSFPEVARVFAKTGTAEIATDPMPPNASDTYIILKPESQWPEGKKTKEDLIEEIQEATVRIPGNNYEFTQP 668 (1051)
T ss_pred HHHHHHHHHhcCCCeEEEEEeecCCccCCCCCCCcceEEEEEEeccccccccCCCHHHHHHHHHHHHhhCCCcceecccC
Confidence 67788888998899877654321 12233444322 12344554444332 121 1100
Q ss_pred --------CcccceEEEEeecCccCh---hhHHHHHHHhhccCCEEEEEeecCC--CeEEEEeCCC-----CCChhHHHH
Q 001981 119 --------PEQDIAVCRLRIKGMMCT---SCSESVERAIEMVDGVKKAVVGVAL--EEAKVHFDPN-----LTDTDHIVE 180 (986)
Q Consensus 119 --------~~~~~~~~~~~i~gm~C~---~C~~~ie~~l~~~~gV~~~~v~~~~--~~~~v~~~~~-----~~~~~~i~~ 180 (986)
.......+.+.+.|.+-. .=+..+++.+++.||+.+++.+... ..+.++.|+. -++++++.+
T Consensus 669 ~~~~~~~~~~g~~~~i~i~l~G~d~~~L~~~a~~v~~~l~~~pgv~~v~~~~~~~~~e~~i~id~~~~~~~Glt~~~v~~ 748 (1051)
T TIGR00914 669 IQMRFNELISGVRSDVAVKVFGDDLDDLDATAEKISAVLKGVPGAADVKVEQTTGLPYLTVEIDREKAARYGLTVGDVQD 748 (1051)
T ss_pred hhhhHHhhccCCCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCCceeeeccccCCCceEEEEECHHHHHHcCCCHHHHHH
Confidence 000023477888885433 2356799999999999999987654 4567777764 256778888
Q ss_pred HHHhc
Q 001981 181 AIEDA 185 (986)
Q Consensus 181 ~i~~~ 185 (986)
.++..
T Consensus 749 ~l~~~ 753 (1051)
T TIGR00914 749 TVATA 753 (1051)
T ss_pred HHHHH
Confidence 88654
No 383
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=20.06 E-value=4.7e+02 Score=34.30 Aligned_cols=47 Identities=6% Similarity=0.150 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHH
Q 001981 372 GTNAAYFYSVYIAVKALTSNTFEGQDFFETSAMLISFILLGKYLEVVAKGKTS 424 (986)
Q Consensus 372 ~~~~a~~~s~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~g~~le~~~~~k~~ 424 (986)
.++.+|+|....++.... ..+|-..+.+++..++-||+..-+|+=+.
T Consensus 687 l~~~GY~yTa~~L~~~l~------~S~~l~~~~~l~y~~~~R~l~i~~RRlA~ 733 (1109)
T PRK10929 687 ASALGYLATAQALLARLE------TSVAIWFLLLVVYHIIRRWMLIQRRRIAF 733 (1109)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667776665554321 12232223333334566776665554333
No 384
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=20.05 E-value=78 Score=32.05 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=43.9
Q ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCH--------HHHHHHHHHcCC---ceEEEecCcccHHHHHHHHhHcCCEEEEE
Q 001981 791 PVKPEAQIVVSSLRSMEISSIMVTGDNW--------ATANAIAKEVGI---GKVFAETDPVGKANKIKELQLKGMTVAMV 859 (986)
Q Consensus 791 ~~~~~~~~~i~~l~~~gi~~~~~Tgd~~--------~~a~~~a~~~gi---~~~~~~~~p~~K~~~v~~l~~~g~~v~~v 859 (986)
++-||+.+++++|++.|..++++|+.+. .+.+-+.+.+|- +++.. ..+|.. + .+. ++|
T Consensus 73 ~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~---~~~K~~-v-----~~D--vlI 141 (191)
T PF06941_consen 73 PPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIF---TGDKTL-V-----GGD--VLI 141 (191)
T ss_dssp -B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEE---ESSGGG-C-------S--EEE
T ss_pred CccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEE---ecCCCe-E-----ecc--EEe
Confidence 5679999999999999988888877643 344556666553 22221 123421 1 122 577
Q ss_pred cCCcccHHHHHhCCce-EEe
Q 001981 860 GDGINDSPALVAADVG-MAI 878 (986)
Q Consensus 860 GDg~nD~~al~~A~vg-ia~ 878 (986)
=|...-+..+..+++. |-+
T Consensus 142 DD~~~n~~~~~~~g~~~iLf 161 (191)
T PF06941_consen 142 DDRPHNLEQFANAGIPVILF 161 (191)
T ss_dssp ESSSHHHSS-SSESSEEEEE
T ss_pred cCChHHHHhccCCCceEEEE
Confidence 7776666665555543 444
No 385
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=20.03 E-value=2.7e+02 Score=25.48 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=36.4
Q ss_pred HHHHHHHHHHCCCeEEEEcC-CC-------HHHHHHHHHHcCCceEEEec-----CcccHHHHHHHHhHcCCEEE-EEcC
Q 001981 796 AQIVVSSLRSMEISSIMVTG-DN-------WATANAIAKEVGIGKVFAET-----DPVGKANKIKELQLKGMTVA-MVGD 861 (986)
Q Consensus 796 ~~~~i~~l~~~gi~~~~~Tg-d~-------~~~a~~~a~~~gi~~~~~~~-----~p~~K~~~v~~l~~~g~~v~-~vGD 861 (986)
..+-++.|+++|++.+|.-- |. ...-+..|+++|+.-++--+ ++++=..+.+.+.+....|+ ++.-
T Consensus 16 ~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~s 95 (110)
T PF04273_consen 16 SPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRS 95 (110)
T ss_dssp -HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SC
T ss_pred CHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 34567789999999887742 21 12245789999997666544 33333445555555444444 4444
Q ss_pred CcccHHH
Q 001981 862 GINDSPA 868 (986)
Q Consensus 862 g~nD~~a 868 (986)
| +.+.+
T Consensus 96 G-~Ra~~ 101 (110)
T PF04273_consen 96 G-TRASA 101 (110)
T ss_dssp S-HHHHH
T ss_pred C-hhHHH
Confidence 4 34433
No 386
>PRK04302 triosephosphate isomerase; Provisional
Probab=20.02 E-value=6.3e+02 Score=26.21 Aligned_cols=87 Identities=16% Similarity=0.260 Sum_probs=52.3
Q ss_pred CChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCceEEEe-------------cCcccHHHHHHHHhHc-CCEEE
Q 001981 792 VKPEAQIVVSSLRSMEISSIMVTGDNWATANAIAKEVGIGKVFAE-------------TDPVGKANKIKELQLK-GMTVA 857 (986)
Q Consensus 792 ~~~~~~~~i~~l~~~gi~~~~~Tgd~~~~a~~~a~~~gi~~~~~~-------------~~p~~K~~~v~~l~~~-g~~v~ 857 (986)
+..+..+.++.+++.|+.+++++|+.. .++. +.+.+-+-+... .+|++-.++++.+++. .+.-+
T Consensus 99 ~~~e~~~~v~~a~~~Gl~~I~~v~~~~-~~~~-~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pv 176 (223)
T PRK04302 99 TLADIEAVVERAKKLGLESVVCVNNPE-TSAA-AAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKV 176 (223)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEcCCHH-HHHH-HhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEE
Confidence 345688899999999999999999843 3333 344554433321 1244445566666653 23455
Q ss_pred EEcCCcccHHHH---HhCC-ceEEecC
Q 001981 858 MVGDGINDSPAL---VAAD-VGMAIGA 880 (986)
Q Consensus 858 ~vGDg~nD~~al---~~A~-vgia~~~ 880 (986)
..|-|+++.... .+++ -|+.+|+
T Consensus 177 i~GggI~~~e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 177 LCGAGISTGEDVKAALELGADGVLLAS 203 (223)
T ss_pred EEECCCCCHHHHHHHHcCCCCEEEEeh
Confidence 668887655444 3343 4566664
Done!