Your job contains 1 sequence.
>001982
MASAASISQIQYPPTCSTSTTTATRKALNIFNTKRDDGSSKILHFLHSCSSSSSSSSSFP
VNLKSSSSKPTRLRPRPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCADL
VIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRR
RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRT
KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH
SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRD
TQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVE
CDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKS
VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED
MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH
PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSENPINGSRWWLTAEDPFQCL
AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV
YSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ
IKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPV
RWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHM
MMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYP
TLSFPPLPERGNFDLEEVLESPYFFN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001982
(986 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2047515 - symbol:SCA3 "SCABRA 3" species:3702 ... 1973 0. 2
UNIPROTKB|P69242 - symbol:RPOT3 "DNA-directed RNA polymer... 1880 0. 2
UNIPROTKB|Q8VWF8 - symbol:RPOT2 "DNA-directed RNA polymer... 1531 3.4e-312 3
UNIPROTKB|Q93Y94 - symbol:RPOT1 "DNA-directed RNA polymer... 1518 4.5e-306 2
DICTYBASE|DDB_G0267416 - symbol:rpmA "DNA-dependent RNA p... 915 2.7e-143 3
SGD|S000001858 - symbol:RPO41 "Mitochondrial RNA polymera... 725 1.9e-131 3
POMBASE|SPAC26H5.12 - symbol:rpo41 "mitochondrial RNA pol... 710 6.4e-129 3
ASPGD|ASPL0000068622 - symbol:AN7609 species:162425 "Emer... 538 2.4e-123 4
RGD|1304599 - symbol:Polrmt "polymerase (RNA) mitochondri... 759 8.1e-117 3
UNIPROTKB|F1PCF7 - symbol:POLRMT "DNA-directed RNA polyme... 767 4.6e-116 2
ZFIN|ZDB-GENE-050208-458 - symbol:si:dkey-21e2.1 "si:dkey... 738 7.6e-115 2
MGI|MGI:1915843 - symbol:Polrmt "polymerase (RNA) mitocho... 761 1.5e-113 3
UNIPROTKB|O00411 - symbol:POLRMT "DNA-directed RNA polyme... 738 2.5e-113 2
UNIPROTKB|K7EKS3 - symbol:POLRMT "DNA-directed RNA polyme... 738 2.8e-113 2
UNIPROTKB|J9P8Y8 - symbol:POLRMT "DNA-directed RNA polyme... 734 7.4e-112 2
UNIPROTKB|E1BZ13 - symbol:POLRMT "DNA-directed RNA polyme... 704 1.4e-111 2
UNIPROTKB|E1BCZ0 - symbol:POLRMT "DNA-directed RNA polyme... 726 5.8e-109 3
CGD|CAL0005126 - symbol:RPO41 species:5476 "Candida albic... 655 1.9e-105 3
FB|FBgn0261938 - symbol:mtRNApol "mitochondrial RNA polym... 690 5.9e-103 4
GENEDB_PFALCIPARUM|PF11_0264 - symbol:PF11_0264 "DNA-depe... 484 1.1e-94 5
UNIPROTKB|Q8IIB0 - symbol:PF11_0264 "DNA-directed RNA pol... 484 1.1e-94 5
WB|WBGene00013680 - symbol:Y105E8A.23 species:6239 "Caeno... 671 1.6e-90 4
CGD|CAL0002343 - symbol:orf19.6499 species:5476 "Candida ... 304 1.6e-63 6
UNIPROTKB|Q5AH39 - symbol:CaO19.13852 "DNA-directed RNA p... 304 1.6e-63 6
UNIPROTKB|K7ESD1 - symbol:POLRMT "DNA-directed RNA polyme... 245 1.5e-19 1
>TAIR|locus:2047515 [details] [associations]
symbol:SCA3 "SCABRA 3" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 GO:GO:0005739 GO:GO:0009507 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006351 EMBL:AC005967
GO:GO:0003899 eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260
PANTHER:PTHR10102 EMBL:Y08722 EMBL:Y08463 IPI:IPI00536028
PIR:G84632 RefSeq:NP_179989.1 UniGene:At.21683
ProteinModelPortal:O24600 SMR:O24600 IntAct:O24600 STRING:O24600
PRIDE:O24600 EnsemblPlants:AT2G24120.1 GeneID:816946
KEGG:ath:AT2G24120 GeneFarm:2877 TAIR:At2g24120
HOGENOM:HOG000241996 InParanoid:O24600 OMA:TQAKLGS PhylomeDB:O24600
ProtClustDB:CLSN2683020 Genevestigator:O24600 Uniprot:O24600
Length = 993
Score = 1973 (699.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 379/556 (68%), Positives = 449/556 (80%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 74 ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130
Query: 150 FSSIFLKGLYKRIK--LQ-EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + L+ E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 131 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQK--AAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q+ K +K AAYAPHIELLPADK+AVIVM
Sbjct: 191 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T RK D++E L K
Sbjct: 251 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 305
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
EK+LLRKRVNSLI+ KR+++A K++K+E TKPWGR TQAKLGSRL+ELLIE AYVQ P+
Sbjct: 306 EKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
+ S P+ RPAFRHRFKT+ K+PG K +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+ALK ++ +VFEALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ +L V+E +W GGNIAGLV+R DV IPEKP SED E+Q WKWS RKA KIN+ERHS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 625 KSGLRWLKIHLANLFS 640
KSGL WLKIHLANL++
Sbjct: 606 KSGLHWLKIHLANLYA 621
Score = 1550 (550.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 290/361 (80%), Positives = 331/361 (91%)
Query: 628 LRWLKIHLANLF--SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 685
L +++ HL ++ +ENPI+G RWWL AEDPFQCLAAC+ L++ALKS SP+SVISHLPIH
Sbjct: 633 LAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIH 692
Query: 686 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 745
QDGSCNGLQHYAALGR++ EAAAVNLVAGEKPADVYSEI+ RVHEIMK+DS+KDP +P
Sbjct: 693 QDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSKDPESNPT 752
Query: 746 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 805
A LAKILI QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG ITD+R LFAAACY+A
Sbjct: 753 AALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLFAAACYSA 812
Query: 806 KVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTS 865
KVTL ALGEIFEAAR+IM WLGDCAK+IAS+N PVRW TPLGLPVVQPYC++ERHLIRTS
Sbjct: 813 KVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCRSERHLIRTS 872
Query: 866 LQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHA 925
LQVLALQREGN V++RKQRTAFPPNFVHSLDG+HMMMTAVACR+AGL+FAGVHDS+WTHA
Sbjct: 873 LQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHA 932
Query: 926 CDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFF 985
CDVD MN+ILR+KFVELYN P+LE+LL+SFQ SYP L FPP+P+RG+FDL+EVL+S YFF
Sbjct: 933 CDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFF 992
Query: 986 N 986
N
Sbjct: 993 N 993
>UNIPROTKB|P69242 [details] [associations]
symbol:RPOT3 "DNA-directed RNA polymerase 3, chloroplastic"
species:4096 "Nicotiana sylvestris" [GO:0009536 "plastid"
evidence=IDA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 Gene3D:1.10.287.260
PANTHER:PTHR10102 EMBL:AB084950 EMBL:AB084951 EMBL:AJ302020
ProteinModelPortal:P69242 Uniprot:P69242
Length = 977
Score = 1880 (666.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 360/579 (62%), Positives = 457/579 (78%)
Query: 70 PTRLRPRPLQ-DSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENS 128
PT P+ L+ IQ NI++ + T ++N + V N + A+ V+ + N
Sbjct: 44 PTSSFPKTLKLPVIQMPINNNIQSQTTVCVST---DENLEELV-NLQKIANGVLTKESN- 98
Query: 129 TNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKL-----QEYREM-KKRKFNLLRRRQ 182
+R+F+QDPPW SS+F+ L+ R K +E+RE+ ++R++ +LRRRQ
Sbjct: 99 -----------KRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQ 147
Query: 183 VKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKK 242
+K ETEAWE+MV+EY+ELE +M EK+LAPNLP++K L LGWF PL +AIE+EQ + T K
Sbjct: 148 IKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVK 207
Query: 243 QKAAYAPHIELLPADKVAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
+AA+APHI+ LPADK+AVIVMHK+MGL+M G E+RCVQVVQAAV IGMA+E E+RIH+
Sbjct: 208 HRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHN 267
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDT 361
FLEKTK ++ A ++E +S+E +LRKRV SLIK RV+E +KL+K+EE + WGRDT
Sbjct: 268 FLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDT 327
Query: 362 QAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVEC 421
QAKLG RL+ELL ETAYVQ PV+ + +PPD+RPAFRH F+ + PG+ K+YGV+EC
Sbjct: 328 QAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIEC 387
Query: 422 DPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV 481
DPLV+ G+DR+ K M+IPYVPMLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A++SV
Sbjct: 388 DPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSV 447
Query: 482 TGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDM 541
M++V+EALDTLGSTKWRVNK++LSV+ESIW GGNIAGLVDR DV IPE S+D+
Sbjct: 448 PTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDI 506
Query: 542 TEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
EV+KWKW VRK+KKINQE HSQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHP
Sbjct: 507 MEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHP 566
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
HLNHLSSD+CRG+LEFAEGRPLGKSGLRWLKIHLA+L++
Sbjct: 567 HLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYA 605
Score = 1560 (554.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 293/361 (81%), Positives = 330/361 (91%)
Query: 628 LRWLKIHLANLF--SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 685
L +++ H+ ++ + NP+NG+RWWL AEDPFQCLAACINLSEALKSSSPH+V SHLPIH
Sbjct: 617 LAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIH 676
Query: 686 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 745
QDGSCNGLQHYAALGR+++EAAAVNLVAG+KPADVY+EIA+RV I++ DS KDP+ P
Sbjct: 677 QDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDPN 736
Query: 746 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 805
ALLAK+LIDQVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKG I DDR LF A+CYAA
Sbjct: 737 ALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAA 796
Query: 806 KVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTS 865
KVTL ALGE+F+AAR M WLGDCAKVIASENQPVRWTTPLGLPVVQPY K +RH+IRTS
Sbjct: 797 KVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTS 856
Query: 866 LQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHA 925
LQVLALQREG+ VE+RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHA
Sbjct: 857 LQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHA 916
Query: 926 CDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFF 985
CDVD+MN+ILR+KFVELY+MP+LE+LLESFQ SYP L+FPPLP+RG+FDL EVLESPYFF
Sbjct: 917 CDVDQMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYFF 976
Query: 986 N 986
N
Sbjct: 977 N 977
>UNIPROTKB|Q8VWF8 [details] [associations]
symbol:RPOT2 "DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial" species:4096 "Nicotiana sylvestris"
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
Gene3D:1.10.287.260 PANTHER:PTHR10102 EMBL:AB058957 EMBL:AB058958
EMBL:AJ302019 ProteinModelPortal:Q8VWF8 Uniprot:Q8VWF8
Length = 1020
Score = 1531 (544.0 bits), Expect = 3.4e-312, Sum P(3) = 3.4e-312
Identities = 280/473 (59%), Positives = 371/473 (78%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M RK+ L+RRQVK ETEAWE+ EYKEL M E++LAPNLP++K LFLGWF PL +
Sbjct: 177 MGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRD 236
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ K KAAYA + LPAD +AVI MHK+MGL+M G + +VVQAA+ I
Sbjct: 237 KIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVI 296
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTE-EVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
G AIEQE+RIH+FLEKTK K +K + E +++E+E LRK+V +L+K +++ ++
Sbjct: 297 GDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQEKLRKKVTNLMKKQKLRAVGQI 356
Query: 349 LKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKH 407
++ ++ +KPWG+D +AK+GSRL++LL++TAY+Q P N PPD+RPAF H +T+ K
Sbjct: 357 VRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKE 416
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMR 467
+ ++RYG+++CD LV +GL+R+A+HM+IPY+PMLVPP KW GY+KGG+L+LPSYVMR
Sbjct: 417 T-KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMR 475
Query: 468 THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR 527
THG+R+Q+EA+K + N ++ VFEALDTLG+TKWR+NK+VLSV++ IW GG +A LVDR
Sbjct: 476 THGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDR 535
Query: 528 NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
+D +PE+P +ED KW+W V+ KK N+ERHSQRCD ELKL+VAR+MKDEE F+YP
Sbjct: 536 DDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFYP 595
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
HN+DFRGRAYPMHPHLNHL SD+CRGVLEFAEGRPLG+SGLRWLKIHLANLF+
Sbjct: 596 HNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFA 648
Score = 1469 (522.2 bits), Expect = 3.4e-312, Sum P(3) = 3.4e-312
Identities = 277/385 (71%), Positives = 332/385 (86%)
Query: 605 HLSSDVCRGVLEFA-EGRPLGKSGLRWLKIHLANLF--SENPINGSRWWLTAEDPFQCLA 661
HL++ GV + + EGR +G + + H+ ++F S+ P+ G RWWL AEDPFQCLA
Sbjct: 642 HLANLFAGGVEKLSLEGR-IG-----FTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLA 695
Query: 662 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 721
CINLSEA++SSSP + +SH+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVY
Sbjct: 696 VCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVY 755
Query: 722 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 781
S IA RV +IMKRD+ +DP++ P A+ A++L++QVDRKLVKQTVMTSVYGVT++GAR+QI
Sbjct: 756 SGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQI 815
Query: 782 KRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVR 841
KRRL+E+G I DD +LF AACYAAKVTLTALGE+FEAARSIM WLG+CAK+IASEN+PVR
Sbjct: 816 KRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVR 875
Query: 842 WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMM 901
WTTPLGLPVVQPY K RHLI+TSLQ+L LQRE V +++QRTAFPPNF+HSLDGSHMM
Sbjct: 876 WTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMM 935
Query: 902 MTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPT 961
MTAVACR AGL+FAGVHDS+WTHACDVD++N+ILR+KFVELY P+LE LLESFQTSYPT
Sbjct: 936 MTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPT 995
Query: 962 LSFPPLPERGNFDLEEVLESPYFFN 986
L FPPLPERG+FD+ +VLESPYFFN
Sbjct: 996 LLFPPLPERGDFDMRDVLESPYFFN 1020
Score = 39 (18.8 bits), Expect = 2.2e-152, Sum P(2) = 2.2e-152
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 165 QEYREMKKRKFNLLRRRQVKQETEAWERMVD 195
QE +++K+ NL+++++++ + R D
Sbjct: 332 QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDD 362
Score = 37 (18.1 bits), Expect = 3.4e-312, Sum P(3) = 3.4e-312
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 164 LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKM 204
L E ++ +K++F RR+Q + R K + K+
Sbjct: 152 LTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKV 192
>UNIPROTKB|Q93Y94 [details] [associations]
symbol:RPOT1 "DNA-directed RNA polymerase 1, mitochondrial"
species:4096 "Nicotiana sylvestris" [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 Gene3D:1.10.287.260 PANTHER:PTHR10102
EMBL:AB058956 EMBL:AB058954 EMBL:AJ416568 ProteinModelPortal:Q93Y94
Uniprot:Q93Y94
Length = 1002
Score = 1518 (539.4 bits), Expect = 4.5e-306, Sum P(2) = 4.5e-306
Identities = 278/470 (59%), Positives = 364/470 (77%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+NLLRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +AI
Sbjct: 165 KYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAA 224
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQK+ K + AYAP + LPA+ +AVI MHK+MGL+M G +VVQAA HIG AI
Sbjct: 225 EQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAI 284
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
E E RIH FLEKTK K + D E+ + KE+E +RK+V L+K +++ + +K++K
Sbjct: 285 EHEARIHRFLEKTK--KSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVK 342
Query: 351 NEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 343 QQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV---ET 399
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KG YLFLPSY+MRTH
Sbjct: 400 MKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTH 459
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
G+++Q+EA+K V ++ VF+ALDTLG+TKWR+N++VL +++ IW SGG +A LVDR D
Sbjct: 460 GAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDRED 519
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
V +PE+P +ED +++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFYYPHN
Sbjct: 520 VPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHN 579
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
LDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLKIHLAN++
Sbjct: 580 LDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVY 629
Score = 1443 (513.0 bits), Expect = 4.5e-306, Sum P(2) = 4.5e-306
Identities = 267/355 (75%), Positives = 313/355 (88%)
Query: 634 HLANLF--SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 691
H+ ++F +E P+ G RWWL AEDPFQCLA CIN++EAL+S SP + IS++PIHQDGSCN
Sbjct: 648 HVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCN 707
Query: 692 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 751
GLQHYAALGR+TL AAAVNLVAG+KPADVYS IA RV +IMKRD+ KDP+ P + A++
Sbjct: 708 GLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARL 767
Query: 752 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTA 811
LI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LFAAACYAAK TLTA
Sbjct: 768 LINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTA 827
Query: 812 LGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLAL 871
LGE+FEAARSIM WLGDCAK+IA EN PVRWTTPLGLPVVQPY K RHLI+TSLQ+L L
Sbjct: 828 LGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTL 887
Query: 872 QREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEM 931
QRE + V +++QRTAFPPNFVHSLDGSHMMMTA+AC+++GL FAGVHDS+WTHA DVD+M
Sbjct: 888 QRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQM 947
Query: 932 NQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 986
N+ILR+KFVELY+ P+LENLLESFQ S+P L FPPLPERG+FDL EVLESPYFFN
Sbjct: 948 NKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>DICTYBASE|DDB_G0267416 [details] [associations]
symbol:rpmA "DNA-dependent RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0006390 "transcription
from mitochondrial promoter" evidence=IDA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA;IC] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=ISS] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
dictyBase:DDB_G0267416 GenomeReviews:CM000150_GR GO:GO:0005759
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003899 GO:GO:0006390
eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260 PANTHER:PTHR10102
HSSP:P00573 EMBL:AF361480 EMBL:AY040092 RefSeq:XP_647347.1
ProteinModelPortal:Q95NZ8 EnsemblProtists:DDB0191106 GeneID:8616158
KEGG:ddi:DDB_G0267416 OMA:FINIDEQ ProtClustDB:CLSZ2729360
Uniprot:Q95NZ8
Length = 950
Score = 915 (327.2 bits), Expect = 2.7e-143, Sum P(3) = 2.7e-143
Identities = 179/371 (48%), Positives = 249/371 (67%)
Query: 622 PLGKSGLRWLKIHLANLFS--ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 679
PL + L + + ++ N+F ++P+NG++WWL A++P+Q LAAC+ L++A++S P +
Sbjct: 587 PLNER-LAFTERNMENIFDSVDSPLNGNKWWLKADNPWQTLAACMELTKAIRSGKPAEFL 645
Query: 680 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 739
S+LPIHQDG+CNGLQHYAALG + A VNL+ + P DVYS +A V +I++ D+
Sbjct: 646 SNLPIHQDGTCNGLQHYAALGGDVWGAEKVNLLPSDCPQDVYSSVAQLVEQIVEEDAKNG 705
Query: 740 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD-DRQ-L 797
+A+ + +VDRKLVKQTVMTSVYGVT++GAREQI+ + EK D D +
Sbjct: 706 DE------IAQFFLGKVDRKLVKQTVMTSVYGVTYIGAREQIENAILEKFSDLDLDEDFI 759
Query: 798 FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKN 857
F ++ Y K T +L +F ARSIM W+ DCA +IA V W TPLGLPVVQPY K
Sbjct: 760 FKSSTYITKNTFASLNNMFVGARSIMKWMSDCATLIAKSGHCVTWNTPLGLPVVQPYKKG 819
Query: 858 ERHLIRT-SLQVLALQREGNL-VEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFA 915
++ IRT + + + L V+ +QR+AFPPNF+HSLD +HM +TA+ C D G+ ++
Sbjct: 820 GKYNIRTLECDFIVVHNDDLLQVDSNRQRSAFPPNFIHSLDSTHMFLTAMTCYDQGITYS 879
Query: 916 GVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDL 975
VHDS+WTHA VD MN ILR +FVEL+ P+LE LLE FQ YP + FP LP++G D+
Sbjct: 880 SVHDSYWTHASTVDRMNDILRNEFVELHKQPILERLLEWFQVRYPDIKFPKLPKKGELDI 939
Query: 976 EEVLESPYFFN 986
+V ES YFF+
Sbjct: 940 NKVKESRYFFH 950
Score = 441 (160.3 bits), Expect = 2.7e-143, Sum P(3) = 2.7e-143
Identities = 119/346 (34%), Positives = 182/346 (52%)
Query: 314 IIADTEEVLSKEKE-LLRKRVNSLIKSKRVMEAQKL-LKNEET---KPWGRDTQAKLGSR 368
+ A+ + ++ K+KE K+++ LI + + + L N + P +D + +G
Sbjct: 261 VYAEYKSLIVKKKEPKTYKKISKLIPNSALKKFYNLSTDNLDVIVLPPESKDIFS-IGEF 319
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKH--PGQKTTKRYGVVECDPLVL 426
LV + + +Q + D S PAF TI H G +TTK L+
Sbjct: 320 LVSQVFKHCTIQESLGE-DGSKQS--PAF-----TIQSHYANGVRTTKVIPHKNIFKLIE 371
Query: 427 EGLD-RSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC 485
G + R + PM++ P W +G YL +MRT+GS Q L+++ +
Sbjct: 372 AGHEIRETGGARL--FPMVIKPLPWITPTEGPYLHYKVPIMRTNGSAMQ---LRTLVDSD 426
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMT--- 542
M ++ AL+ LG T W +N+ + +V+ W +GGNI + R D PE +S+DM
Sbjct: 427 MSLIYRALNILGETPWVINRDLYNVILEAWANGGNIGDIPKRTDFEYPE--ISDDMLFDH 484
Query: 543 EVQKWKWSV-RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
E +K + ++ K +N HS RCDT KL VAR+ D Y+PHN+DFRGR+YP+ P
Sbjct: 485 EARKELYKKEQRIKSLNFNLHSLRCDTNYKLEVARKFLDHT-LYFPHNIDFRGRSYPIPP 543
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSEN--PIN 645
HLNHL SD CR +L+F + PLG+ GL WLKIH+ANL+ + P+N
Sbjct: 544 HLNHLGSDFCRSLLKFEKSLPLGEKGLEWLKIHVANLYGVDKIPLN 589
Score = 81 (33.6 bits), Expect = 2.7e-143, Sum P(3) = 2.7e-143
Identities = 35/155 (22%), Positives = 69/155 (44%)
Query: 166 EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFG 225
+ +E+ + NL R+ Q E EA + V Y++L K + I+ + + W
Sbjct: 139 DVKEISDDEKNL-RKIQTLLEFEAIDDAVTRYRDLMLDSKGKSFVTSFKSIRDVLMQWNE 197
Query: 226 PLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGL-VMAGHEDRCVQVVQ 284
L+E + QK TK Q AA+ ++ + K + ++ ++G V+ D ++
Sbjct: 198 GLTEKV---QKDLATKDQDAAWVTILKTVSVQKCILKSLNIIVGKSVLKDRYDFATNIII 254
Query: 285 AAVHIGMAIEQEIRIHSFLEKTKNYKR-KKIIADT 318
+ + + E + I E K YK+ K+I ++
Sbjct: 255 ETIGVSVYAEYKSLIVKKKEP-KTYKKISKLIPNS 288
>SGD|S000001858 [details] [associations]
symbol:RPO41 "Mitochondrial RNA polymerase" species:4932
"Saccharomyces cerevisiae" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0000002 "mitochondrial genome maintenance" evidence=IMP]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=IDA;IMP] [GO:0005759 "mitochondrial matrix" evidence=IDA]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0034245 "mitochondrial DNA-directed RNA
polymerase complex" evidence=IDA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
SGD:S000001858 GO:GO:0003677 EMBL:D50617 EMBL:BK006940
GO:GO:0042645 GO:GO:0000002 GO:GO:0003899 GO:GO:0006390
GO:GO:0034245 eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260
PANTHER:PTHR10102 GeneTree:ENSGT00390000008060 OrthoDB:EOG4M0J8T
EMBL:M17539 PIR:S56218 RefSeq:NP_116617.1 ProteinModelPortal:P13433
DIP:DIP-2431N IntAct:P13433 MINT:MINT-500319 STRING:P13433
PaxDb:P13433 PeptideAtlas:P13433 PRIDE:P13433 EnsemblFungi:YFL036W
GeneID:850507 KEGG:sce:YFL036W HOGENOM:HOG000248537 OMA:HLIQDWL
NextBio:966215 Genevestigator:P13433 GermOnline:YFL036W
Uniprot:P13433
Length = 1351
Score = 725 (260.3 bits), Expect = 1.9e-131, Sum P(3) = 1.9e-131
Identities = 156/361 (43%), Positives = 218/361 (60%)
Query: 622 PLGKSGLRWLKIHLANL--FSENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 679
PL K + + + HL ++ +ENP+ G RWW TA+ P+Q LA C L+E +K +P I
Sbjct: 879 PL-KDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATCFELNEVMKMDNPEEFI 937
Query: 680 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 739
SH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY+ +A V + ++ + K
Sbjct: 938 SHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVARLVQKRLEIAAEKG 997
Query: 740 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR-QLF 798
AKIL D++ RK+VKQTVMT+VYGVT+VGA QI ++L I DDR +
Sbjct: 998 DEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQLSP---IFDDRKESL 1048
Query: 799 AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE-------------NQP-----V 840
+ Y K +A+ E+F +A I WLG+ AK I+ N+P V
Sbjct: 1049 DFSKYLTKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLDVDEKSFKNGNKPDFMSSV 1108
Query: 841 RWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREG--NLVEIRKQRTAFPPNFVHSLDGS 898
WTTPLGLP+VQPY + + + T+LQ + + N V R+Q+ PPNF+HSLD S
Sbjct: 1109 IWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNARRQKAGLPPNFIHSLDAS 1168
Query: 899 HMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTS 958
HM+++A C GL FA VHDS+WTHA D+D MN +LR++F++L+ + ++ L E F
Sbjct: 1169 HMLLSAAECGKQGLDFASVHDSYWTHASDIDTMNVVLREQFIKLHEVDLVLRLKEEFDQR 1228
Query: 959 Y 959
Y
Sbjct: 1229 Y 1229
Score = 571 (206.1 bits), Expect = 1.9e-131, Sum P(3) = 1.9e-131
Identities = 153/479 (31%), Positives = 240/479 (50%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKGLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G AIE E R L+ R D + + K+L++ S+ +S ++ E K+
Sbjct: 538 VGKAIEMEFRSEQVLKSESQAFR-----DVNKKSPEFKKLVQN-AKSVFRSSQI-EQSKI 590
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQ-HPVNPADYSPPDVR-PAFRHRFKTILK 406
L W + +A++GS L+ +LI+ A V V+P + PAF H ++
Sbjct: 591 L-------WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAPAFAHGYQY--- 640
Query: 407 HPGQKTTKRYGVVECDPLVLEGL--DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSY 464
H G K GV++ ++ L +R + +PMLV PK W + GGY + S
Sbjct: 641 HNGSKL----GVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQST 696
Query: 465 VMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V+ +W G
Sbjct: 697 LLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGEGFLD 756
Query: 524 LVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCDTELKLSVARRMKD 580
+ D VL P P + D + ++ WK V+ A K + +R S RCDT KL +AR
Sbjct: 757 IPGAQDEMVLPPAPPKNSDPSILRAWKLQVKTIANKFSSDR-SNRCDTNYKLEIARAFLG 815
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SGL+WLKIHL+NLF
Sbjct: 816 EK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLSNLF 873
Score = 58 (25.5 bits), Expect = 1.9e-131, Sum P(3) = 1.9e-131
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 962 LSFPPLPERGNFDLEEVLESPYFFN 986
L P +P +G+FD+ + S YFF+
Sbjct: 1327 LRLPEIPPKGDFDVTVLRNSQYFFS 1351
Score = 37 (18.1 bits), Expect = 2.7e-75, Sum P(3) = 2.7e-75
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 163 KLQEYREMKKRKFNLLRRRQVKQETEAWERMV 194
K E++++ + ++ R Q++Q W + +
Sbjct: 565 KSPEFKKLVQNAKSVFRSSQIEQSKILWPQSI 596
>POMBASE|SPAC26H5.12 [details] [associations]
symbol:rpo41 "mitochondrial RNA polymerase Rpo41"
species:4896 "Schizosaccharomyces pombe" [GO:0000002 "mitochondrial
genome maintenance" evidence=ISS] [GO:0001044 "mitochondrial RNA
polymerase regulatory region sequence-specific DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005759 "mitochondrial matrix"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 PomBase:SPAC26H5.12 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0005759 GO:GO:0000002 GO:GO:0003899
GO:GO:0006390 eggNOG:COG5108 Gene3D:1.10.287.260 PANTHER:PTHR10102
PIR:T38431 RefSeq:NP_594459.2 STRING:O13993
EnsemblFungi:SPAC26H5.12.1 GeneID:2542687 OrthoDB:EOG4M0J8T
NextBio:20803735 GO:GO:0001044 Uniprot:O13993
Length = 1154
Score = 710 (255.0 bits), Expect = 6.4e-129, Sum P(3) = 6.4e-129
Identities = 148/337 (43%), Positives = 203/337 (60%)
Query: 640 SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 699
++ P++G++WW A+DPFQ LAAC ++EA++S S ISH+PI QDG+CNGLQHYAAL
Sbjct: 774 ADRPLDGNKWWSKADDPFQALAACFEIAEAVRSGDHESYISHIPIQQDGTCNGLQHYAAL 833
Query: 700 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 759
G + A VNL + P+DVY +A V +K+D+ +A L D+V R
Sbjct: 834 GGDIEGAKQVNLWPSDHPSDVYEAVAEIVRGFLKKDAEAGDE------MANFLKDKVTRS 887
Query: 760 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA--ACYAAKVTLTALGEIFE 817
+VK TVMT+VYGVT+VGAR+QI +LE +I +L A A Y K AL +F
Sbjct: 888 VVKPTVMTNVYGVTYVGARKQISEKLE---NIDGMEKLKVADYANYLTKKVFEALRSLFT 944
Query: 818 AARSIMGWLGDCAKVIA-------------SENQPVRWTTPLGLPVVQPYCKNERHLIRT 864
A I WL C +I E PV WTT L LP+VQPY + IRT
Sbjct: 945 QAHEIQDWLSACCNLITHSLPADYIKEGIKDELTPVVWTTLLNLPIVQPYRNYKSRQIRT 1004
Query: 865 SLQVLALQREGNLVEIR--KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFW 922
+LQ + ++ ++ KQ TAFPPNF+HSLD +HM MT + C + ++FA VHDS+W
Sbjct: 1005 NLQTVFIEERDRTATVQPHKQATAFPPNFIHSLDATHMFMTCLKCSEQNINFAAVHDSYW 1064
Query: 923 THACDVDEMNQILRKKFVELYNMPMLENLLESFQTSY 959
THACDVD+MN +LR+ FV L++ ++E L + F+ Y
Sbjct: 1065 THACDVDQMNSLLREAFVLLHSNNIMERLKQEFEERY 1101
Score = 511 (184.9 bits), Expect = 6.4e-129, Sum P(3) = 6.4e-129
Identities = 146/486 (30%), Positives = 236/486 (48%)
Query: 175 FNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLP-HIKGLFLGWFGPLSEAIER 233
FNL R++ + E A + +K E + + R +P ++ LF W+ L + +
Sbjct: 284 FNLARQKLL--EKSAILSAAEVWKS-EHESVLNRGNLQVPKNVSSLFYSWYVQLEQLFKE 340
Query: 234 E----------QKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVV 283
E + + + K + Y P ++LL + K+A + + ++ L DR +V
Sbjct: 341 EISLIDDLALNESLDK-KNDRLIYGPFLKLLSSKKLAALTIMEVAQLSTNPRYDRGARVT 399
Query: 284 QAAVHIGMAIEQEIRIHSFL--EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKR 341
+G + E+E EK K+YK KK + + L + R+ V +L S
Sbjct: 400 TLLGGLGRSFEREFLSEQIQRQEKNKSYKDKKRLKE----LFNDPRKFRQAVKNLRLSNT 455
Query: 342 VMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRP----AF 397
++ N W K+GS + LL+ A ++ V D S + AF
Sbjct: 456 ---RDNIVLNPSVDSWPSAIVMKVGSVALCLLLSVAKIE--VTAKDLSTGGILKQEVAAF 510
Query: 398 RHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGG 457
H ++ G+K VE L+ +++ H + +PMLV PK W + GG
Sbjct: 511 VHTYQY---SNGRKVGMIVPHVEFYKLLSRDIEKPHLHPQL--LPMLVTPKPWTSWIDGG 565
Query: 458 YLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWV 516
Y + ++R G+ +Q + L + N + ++F+A+ +LG WR+N+++ +VL IW
Sbjct: 566 YYYSRQPLVRLKGALEQVDYLMKASENGQLDELFKAVSSLGKVSWRINQRLFNVLIRIWN 625
Query: 517 SGGNIAGLVDRNDVL-IPEKPLSEDMTEVQKWKWSVRKAK--KINQERHSQRCDTELKLS 573
SG + R +P P + K W R+ + + HSQRCD KL
Sbjct: 626 SGEKFLSIPPREVKCDMPPYP-KNSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLE 684
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+AR +E+ FY+PH+LDFRGRAYP+ HL+H+S+DVCRG+LEF+ G+PLG GL WLK+
Sbjct: 685 IARAFLNEK-FYFPHSLDFRGRAYPLSSHLHHVSNDVCRGLLEFSTGKPLGPKGLNWLKV 743
Query: 634 HLANLF 639
HLANLF
Sbjct: 744 HLANLF 749
Score = 101 (40.6 bits), Expect = 6.4e-129, Sum P(3) = 6.4e-129
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 949 ENLLESF-QTSYPTLSFPPLPERGNFDLEEVLESPYFFN 986
E+L F SY L FPPLP RG DL++VLES YFF+
Sbjct: 1116 EDLKAKFGNKSYIPLEFPPLPARGALDLKKVLESKYFFS 1154
>ASPGD|ASPL0000068622 [details] [associations]
symbol:AN7609 species:162425 "Emericella nidulans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001044 "mitochondrial RNA polymerase regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 GO:GO:0003677 GO:GO:0006351 EMBL:BN001304
EMBL:AACD01000130 GO:GO:0003899 eggNOG:COG5108 KO:K10908
Gene3D:1.10.287.260 PANTHER:PTHR10102 OrthoDB:EOG4M0J8T
RefSeq:XP_680878.1 STRING:Q5AVS1 EnsemblFungi:CADANIAT00000724
GeneID:2869348 KEGG:ani:AN7609.2 HOGENOM:HOG000167182 OMA:LQAEDPW
Uniprot:Q5AVS1
Length = 1391
Score = 538 (194.4 bits), Expect = 2.4e-123, Sum P(4) = 2.4e-123
Identities = 148/481 (30%), Positives = 247/481 (51%)
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL----PHIKGLFLGWFGPLSEAIERE 234
+RRQ + E + + V+ +++ E K I+++ P++ + L W L IE E
Sbjct: 348 QRRQQQLEADVMKSAVNRWRQ-ENK-IQQQFQPDVFENGKQLGPLLRQWNADLVVRIEEE 405
Query: 235 QK---MQRTK-------KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQ 284
K RT +++ Y P++ ++ +++A + + + + D+ +++
Sbjct: 406 FKEIEKARTASMITDEVRERVDYGPYLRMVKPEELASLTILTTINNLTRNGLDKGIKLAP 465
Query: 285 AAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
AV IG + +E+ + +E+ RKK + V ++ L ++ +K
Sbjct: 466 LAVAIGNDVYEEVALQRMVER-----RKKEMNSAHRVKLIKQIFLGRKDRDKLKGINWKN 520
Query: 345 AQKLLKNEETK-PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
A K ++ EE W +AK+G+ L+ LL + A V PVN A + ++ +
Sbjct: 521 ALKSMEQEEPDIVWATAIKAKVGAVLMSLLYDVAKVPVPVNEAA-AAKKIKRRDEVVMQP 579
Query: 404 ILKHPGQKTT-KRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
+ +H Q T +R G + +P +++ L R A+ +L +PML P+ WKGY G Y +
Sbjct: 580 VFQHSYQITWGRRTGYIHVNPEMIKLLTREPAEDLLGRQLPMLCKPRPWKGYKDGAYFYH 639
Query: 462 PS-YVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
+ +V T G Q +K+ N +K + + LD LG T W +N+ V +V+ W +G
Sbjct: 640 QNLFVRSTPGESLQPTYVKAALENDGLKMIRKGLDILGGTGWVINRDVFNVMLEAWNTGE 699
Query: 520 NIAGLVDRN-DVLIPEKPLSEDMTEVQK-WKWSVRKAKKINQERHSQRCDTELKLSVARR 577
IA L + D+ IP KP E+ E +K W VR + HSQRC ++ VAR
Sbjct: 700 PIADLAPLDPDLPIPPKPSPEEGYEAEKEWHTKVRDIENQRGGYHSQRCFQNFQMEVARS 759
Query: 578 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLAN 637
+E FY PHN+DFRGRAYP+ P+LN +++D RG+L F+E +PLG+SGLRWLKI +AN
Sbjct: 760 YLNET-FYLPHNMDFRGRAYPIPPYLNQMAADNARGLLLFSEAKPLGESGLRWLKIQIAN 818
Query: 638 L 638
L
Sbjct: 819 L 819
Score = 465 (168.7 bits), Expect = 2.4e-123, Sum P(4) = 2.4e-123
Identities = 102/223 (45%), Positives = 137/223 (61%)
Query: 634 HLANLF--SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 691
HL ++ + N ++G RWWL AEDP+QCLAAC L AL+ +P S LPIHQDGSCN
Sbjct: 837 HLDDVLDSANNGLHGRRWWLQAEDPWQCLAACCELRNALQHPNPTEYASRLPIHQDGSCN 896
Query: 692 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAK 750
GLQHYAALG + L A VNL ++P+DVYS +A V E + ++ + DP +AK
Sbjct: 897 GLQHYAALGGDKLGAQQVNLEPSDRPSDVYSAVAQYVKEAVATEAAQGDP-------IAK 949
Query: 751 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLT 810
+L ++ RK+VKQTVMT+VYGVTF+GA +QI+++L D + A Y A+
Sbjct: 950 MLEGKITRKVVKQTVMTNVYGVTFIGAMKQIRKQLANHYPELSDHEKKTGAIYIARKVFQ 1009
Query: 811 ALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQP 853
ALG +FE AR I WLGD A I +++ P L V+ P
Sbjct: 1010 ALGTMFEGARDIQHWLGDSANRI-TQSLPPEQIEDLAKEVLNP 1051
Score = 331 (121.6 bits), Expect = 2.4e-123, Sum P(4) = 2.4e-123
Identities = 63/122 (51%), Positives = 84/122 (68%)
Query: 840 VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGN--LVEIRKQRTAFPPNFVHSLDG 897
V WTTPLGLPVVQPY + TS Q L++ + + V RKQ AFPPNF+HSLD
Sbjct: 1081 VIWTTPLGLPVVQPYRNRLPRRVVTSFQSLSVVEQDSRYCVTRRKQLQAFPPNFIHSLDA 1140
Query: 898 SHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQT 957
+HMM++A+AC AGL F+ VHDSFWTH DVD MN+ILR+ FV++++ +++ L F+
Sbjct: 1141 THMMLSAIACHQAGLTFSAVHDSFWTHPSDVDSMNRILREAFVQMHSDDVIKRLAAEFEV 1200
Query: 958 SY 959
Y
Sbjct: 1201 RY 1202
Score = 62 (26.9 bits), Expect = 2.4e-123, Sum P(4) = 2.4e-123
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 962 LSFPPLPERGNFDLEEVLESPYFFN 986
+ F P+P +G +D+ + ES YFF+
Sbjct: 1367 MRFRPVPTKGAWDVSRIRESKYFFS 1391
Score = 56 (24.8 bits), Expect = 4.5e-28, Sum P(5) = 4.5e-28
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 719 DVYSEIAV-RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 762
DVY E+A+ R+ E K++ N S H L+ +I + + DR +K
Sbjct: 473 DVYEEVALQRMVERRKKEMN---SAHRVKLIKQIFLGRKDRDKLK 514
Score = 47 (21.6 bits), Expect = 1.6e-71, Sum P(5) = 1.6e-71
Identities = 15/68 (22%), Positives = 29/68 (42%)
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD-VC 611
+++++ Q+R Q+ + ++ S R + E D + P L ++D V
Sbjct: 341 ESREVYQQRRQQQLEADVMKSAVNRWRQENKIQQQFQPDVFENGKQLGPLLRQWNADLVV 400
Query: 612 RGVLEFAE 619
R EF E
Sbjct: 401 RIEEEFKE 408
Score = 46 (21.3 bits), Expect = 1.6e-71, Sum P(5) = 1.6e-71
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 293 IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSL 336
+ Q+ +SFL + +I +E+L+K K +LR RVN +
Sbjct: 93 LRQKQEWNSFLPSQGEFDPSSLIIMDDELLTKPK-ILR-RVNGI 134
Score = 40 (19.1 bits), Expect = 9.7e-49, Sum P(3) = 9.7e-49
Identities = 24/96 (25%), Positives = 43/96 (44%)
Query: 736 SNKDPSKHPQALLA-----KILIDQVDRKLVKQTVMTSVYGVTFV--GAREQIKRRLEEK 788
S+ DPS H + + + + Q R + + V+TS ++ V +R + RR + +
Sbjct: 1069 SSSDPSAHFKTTVIWTTPLGLPVVQPYRNRLPRRVVTSFQSLSVVEQDSRYCVTRRKQLQ 1128
Query: 789 G------HITD--DRQLFAAACYAAKVTLTALGEIF 816
H D L A AC+ A +T +A+ + F
Sbjct: 1129 AFPPNFIHSLDATHMMLSAIACHQAGLTFSAVHDSF 1164
>RGD|1304599 [details] [associations]
symbol:Polrmt "polymerase (RNA) mitochondrial (DNA directed)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=ISO] [GO:0042645 "mitochondrial nucleoid" evidence=ISO]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 RGD:1304599 GO:GO:0003677 GO:GO:0006351
GO:GO:0042645 GO:GO:0003899 Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 OrthoDB:EOG4CZBF9 IPI:IPI00366179
Ensembl:ENSRNOT00000039232 UCSC:RGD:1304599 Uniprot:D3ZYB6
Length = 1205
Score = 759 (272.2 bits), Expect = 8.1e-117, Sum P(3) = 8.1e-117
Identities = 160/371 (43%), Positives = 230/371 (61%)
Query: 640 SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 699
++NP+ G +WW+ A++P+Q LA C+ +++A++S P + +SHLP+HQDGSCNGLQHYAAL
Sbjct: 844 ADNPLTGQKWWMKADEPWQTLACCMEVAQAVRSPDPTAYVSHLPVHQDGSCNGLQHYAAL 903
Query: 700 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 759
GR+++ AA+VNL + P DVY E+A +V E+ ++D+ K+ + QAL V RK
Sbjct: 904 GRDSVGAASVNLTPSDLPQDVYREVATQVEELRQQDA-KEGLQVAQALEGF-----VSRK 957
Query: 760 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGEIFE 817
+VKQTVMT VYGVT G R QI++RL E ++D Q F A+ Y + +L E+F
Sbjct: 958 VVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFKSLQEMFS 1014
Query: 818 AARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR---E 874
+ R+I WL + A +I+ PV W TPLG+P++QPY + + ++ LQ + +
Sbjct: 1015 STRAIQRWLTESANLISHAGWPVEWVTPLGIPIIQPYHRESKIQVKGGLQSITFTSSVDD 1074
Query: 875 GNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQI 934
KQ+ FPPNF+HSLD SHMM+TA+ C GL F VHD FWTHA D+ MN++
Sbjct: 1075 SQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCFWTHAADIPMMNEV 1134
Query: 935 LRKKFVELYNMPMLENL---LES-FQTSYPTLSFPP---------------LPERGNFDL 975
R++FV L++ P+LE+L LE F + T S P LPE G FDL
Sbjct: 1135 CREQFVRLHSEPILEDLAKFLEKRFCSVSNTRSLKPSELALITKLQETLRSLPETGTFDL 1194
Query: 976 EEVLESPYFFN 986
+V+ S YFF+
Sbjct: 1195 GQVIRSTYFFS 1205
Score = 393 (143.4 bits), Expect = 8.1e-117, Sum P(3) = 8.1e-117
Identities = 104/300 (34%), Positives = 155/300 (51%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN-PADYSPPDVRPAFRHRFKTILKH 407
L+ +PW +LG +L ELL++ VQ P + A + + P H +
Sbjct: 528 LETPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARHGAQNFIPVLYHVYSF---- 581
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSY 464
++ ++ G+++ P L+ +A+ L VPML PP W + G YL +
Sbjct: 582 ---RSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTK 638
Query: 465 VMR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA- 522
+MR T G+ + Q L+ + +AL LG+ WRVN ++L ++ I+ G +
Sbjct: 639 IMRATEGTTQHQRLLERCPPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCMRL 698
Query: 523 GLVD-RNDVLIPEK-PLSEDMTEVQKWKWSVRKAK--KINQERHSQRCDTELKLSVARRM 578
G+ R++ P K L T V K + A+ K +E HS R + +LS+A+ +
Sbjct: 699 GVPPPRSEAPRPAKHQLPPGSTPVHKSELRKELARCLKAAREMHSLRSEALYRLSLAQHL 758
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+D F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 759 RDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL 817
Score = 54 (24.1 bits), Expect = 8.1e-117, Sum P(3) = 8.1e-117
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 337 IKSKRVMEAQKLLKNEETKPWG-------RDTQAKLGSRLVE 371
+ +K V+EA+K LK +K W R+T+AK+GS+ E
Sbjct: 392 VMTKEVIEARKTLKALRSK-WEVELLRVLRETKAKMGSQAYE 432
>UNIPROTKB|F1PCF7 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 InterPro:IPR002885 GO:GO:0003677 GO:GO:0006351
PROSITE:PS51375 GO:GO:0003899 Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 EMBL:AAEX03012675 EMBL:AAEX03012674
Ensembl:ENSCAFT00000031345 Uniprot:F1PCF7
Length = 1221
Score = 767 (275.1 bits), Expect = 4.6e-116, Sum P(2) = 4.6e-116
Identities = 154/367 (41%), Positives = 225/367 (61%)
Query: 640 SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 699
++ P+ G +WW+ ++P+Q LA C+ ++ A++S P + +SH P+HQDGSCNGLQHYAAL
Sbjct: 862 ADRPMTGRKWWMEVDEPWQALACCMEIARAVRSPDPTAFVSHFPVHQDGSCNGLQHYAAL 921
Query: 700 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 759
GR+++ AA+VNL+ + P DVYS +A +V ++D+ + +A++L + RK
Sbjct: 922 GRDSIGAASVNLLPSDFPQDVYSGVAAQVEVFRRQDAQRG------VRVAQVLEGFISRK 975
Query: 760 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAA 819
+VKQTVMT VYGVT G R QI+RRL E + + ++ A+ Y + +L E+F
Sbjct: 976 VVKQTVMTVVYGVTRYGGRLQIERRLRELSNFPQEF-VWEASHYLVRQVFNSLQEMFSGT 1034
Query: 820 RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVE 879
R+I WL + A++IA V W TPLG+P++QPY ++ + +I +Q L G+ +
Sbjct: 1035 RAIQHWLTESARLIAQTGSAVEWVTPLGIPIIQPYHRDSKVMIGGGIQSLTFSNSGDTTQ 1094
Query: 880 ---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILR 936
KQ+ FPPNF+HSLD SHMM+TA+ C GL F VHD FWTHA DV MNQ+ R
Sbjct: 1095 KPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCFWTHAADVAVMNQVCR 1154
Query: 937 KKFVELYNMPMLENL----LESFQTSYPTLSFPP-------------LPERGNFDLEEVL 979
++FV L++ P+L NL +E F S +L P +PE G FDLE+V
Sbjct: 1155 EQFVHLHSQPILHNLSRFLVERFCCSSRSLKHPKDSWISKLQDTLKAVPETGAFDLEQVK 1214
Query: 980 ESPYFFN 986
S YFF+
Sbjct: 1215 HSTYFFS 1221
Score = 411 (149.7 bits), Expect = 4.6e-116, Sum P(2) = 4.6e-116
Identities = 106/293 (36%), Positives = 152/293 (51%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+PW +LG RL ELL+ET + + A + P H + ++ +
Sbjct: 552 QPWPLPVLVELGKRLAELLVETVRIPGSL-AAPQGACTLIPVLYHVYSF-------RSFR 603
Query: 415 RYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HG 470
+ G+++ P E L +A+H LI VPML PP W + G +L P+ +MR+ G
Sbjct: 604 QIGILKPHPAFTELLAAAAEHTLIFEAAEVPMLCPPLPWTSPHTGAFLLSPTKLMRSLEG 663
Query: 471 SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS-VLESIWVSGGNIAGL-VDRN 528
+ + Q L S + +AL LG+ WRVN +VL VLE G G+ +
Sbjct: 664 TMQHQRLLDSCPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFAAKGCPRLGVPAPPS 723
Query: 529 DV-LIPEKPLSEDMTEVQKW--KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ PE L D + QK + + + K+ +E HS R D +LS+A+ ++ F+
Sbjct: 724 EAPRPPEGRLPPDASPAQKAEVRRELARCLKVAREMHSLRSDALYRLSLAQHLRHRV-FW 782
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLKIHL NL
Sbjct: 783 LPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNL 835
Score = 43 (20.2 bits), Expect = 3.1e-77, Sum P(2) = 3.1e-77
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 457 GYLFLPSYVMRTHGSR-KQQEAL 478
G+L L +V+ TH SR +QQ+ L
Sbjct: 222 GHLPLAHHVLVTHHSRARQQQQL 244
>ZFIN|ZDB-GENE-050208-458 [details] [associations]
symbol:si:dkey-21e2.1 "si:dkey-21e2.1" species:7955
"Danio rerio" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
InterPro:IPR002885 ZFIN:ZDB-GENE-050208-458 GO:GO:0003677
GO:GO:0006351 PROSITE:PS51375 TIGRFAMs:TIGR00756 GO:GO:0003899
Gene3D:1.10.287.260 PANTHER:PTHR10102 GeneTree:ENSGT00390000008060
EMBL:BX284682 EMBL:BX927243 IPI:IPI00610004
Ensembl:ENSDART00000088169 Uniprot:F1Q5F7
Length = 1281
Score = 738 (264.8 bits), Expect = 7.6e-115, Sum P(2) = 7.6e-115
Identities = 152/368 (41%), Positives = 226/368 (61%)
Query: 640 SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 699
+++P++G +WW+ A++P+Q LA C+ ++ A +S H IS+ P+HQDGSCNGLQHYAAL
Sbjct: 921 ADHPLDGRKWWMNADEPWQALACCMEIANASRSPDHHKFISYFPVHQDGSCNGLQHYAAL 980
Query: 700 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 759
GR+ + A +VNL+ P DVYS +A +V E RD+ + +A++L + RK
Sbjct: 981 GRDVIGATSVNLMPCALPQDVYSGVAKQVEEFRVRDAERGLK------IAQVLQGFISRK 1034
Query: 760 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAA 819
+VKQTVMT VYGVT G R QI++RL+E D ++ A+ Y +L E+F
Sbjct: 1035 VVKQTVMTVVYGVTRYGGRLQIEKRLKEIDDFPKD-YVWDASHYLVVQVFNSLKEMFTGT 1093
Query: 820 RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQ--REGN- 876
R I WL + A++IA + V W TPLGLP++QPY + +++ ++Q L + + N
Sbjct: 1094 REIQEWLTESARLIAKSGRTVEWVTPLGLPIIQPYHRIRNQILKGNIQNLNIHISHDANE 1153
Query: 877 LVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILR 936
+ KQ+ AFPPNF+HSLD +HMM+T++ C AGL F VHD +WTHA VD MN++ R
Sbjct: 1154 KPDSMKQKNAFPPNFIHSLDSTHMMLTSLHCHRAGLTFVSVHDCYWTHAVTVDIMNRVCR 1213
Query: 937 KKFVELYNMPMLENL----LESFQTSYPTLSFPP--------------LPERGNFDLEEV 978
++FV L++ P+LE L L+ + P S P +P+ G+FDLE+V
Sbjct: 1214 EQFVALHSQPILEELSWFLLQKYSRRPPVGSKPKKLLEYYTLMKVLSSVPQTGDFDLEKV 1273
Query: 979 LESPYFFN 986
+S YFF+
Sbjct: 1274 KDSVYFFS 1281
Score = 432 (157.1 bits), Expect = 7.6e-115, Sum P(2) = 7.6e-115
Identities = 153/539 (28%), Positives = 249/539 (46%)
Query: 120 LVIPRSENSTNH-QLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLL 178
LVIP + S + Q +C P + F + +I+ K Y +LQ+ +FNL
Sbjct: 391 LVIPHFQPSVSKTQPVCSLPLVKQFYAERE--DAIYPKLDYSLKELQD-------RFNL- 440
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKR--LAPNLPHIKGLFLGWFGPLSEAIEREQK 236
+ +++ T V+ K + M R LA H W L +A++ ++
Sbjct: 441 -QLAMEKATTVTINSVEALKPVTENMAHMRELLAKQRKH-------WEKALLQALKDRKQ 492
Query: 237 MQRTKKQKA---AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
M QK+ P++ +L + I++ + L G ++ A +G +
Sbjct: 493 MMSNNSQKSWNTCLYPYLCILDDQEYVDIMLQSLDKLSPNGES-----LLFMADEMGNRV 547
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE---LLRKRVNSLIKSKRVMEAQKLLK 350
I + K + I + E+L+ + E +L + + ++ LL
Sbjct: 548 YNLYCIRQKSQSQMVEKLRSIYSSYAELLANDTETNGMLPRECWTNLEISGNRSGPSLL- 606
Query: 351 NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ 410
+++T PW +LGS LV+L++ +Q + + PA + IL H
Sbjct: 607 SDDT-PWPMILMVQLGSFLVDLMVHELKIQSNI---------LNPALEKKLIPILYHMYT 656
Query: 411 -KTTKRYGVVECDPLVLEGLDRSAKHMLI--PYV-PMLVPPKKWKGYNKGGYLFLPSYVM 466
++ + G ++ P++ L + + L YV PML PP W G YL P+ +M
Sbjct: 657 FRSNHKIGFIKPHPILTRILREATETKLTFDSYVMPMLCPPVPWTSPKSGAYLLTPAKLM 716
Query: 467 R-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
R + G+ + Q L+ + V ++L+ +GS W++NK +L ++ SI+ G+ +
Sbjct: 717 RASDGAMQHQLLLEKTQEEDLHAVLDSLNQVGSCPWKINKPLLDIIISIFNDKGSDKLSI 776
Query: 526 DRNDVLIPE----KPLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
PE P T+V+K K KAKK+ E HS R D KLS+A ++
Sbjct: 777 PPPLSEAPEIPRFNPHDPSYTQVEKAFMKREGIKAKKVVAEMHSLRMDALYKLSIANHVR 836
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
D+ F++PHN+DFRGR YP+ P+ NHL SDV R +L FAEGRPLG GL WLKIHL NL
Sbjct: 837 DKI-FWFPHNMDFRGRTYPLPPYFNHLGSDVTRALLLFAEGRPLGPKGLDWLKIHLVNL 894
>MGI|MGI:1915843 [details] [associations]
symbol:Polrmt "polymerase (RNA) mitochondrial (DNA
directed)" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=ISO]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 InterPro:IPR002885 MGI:MGI:1915843 GO:GO:0005739
GO:GO:0003677 GO:GO:0006351 GO:GO:0042645 PROSITE:PS51375
TIGRFAMs:TIGR00756 GO:GO:0003899 CTD:5442 eggNOG:COG5108
HOGENOM:HOG000044061 HOVERGEN:HBG078730 KO:K10908 OMA:WARKGSF
Gene3D:1.10.287.260 PANTHER:PTHR10102 EMBL:AK053356 EMBL:AK085666
IPI:IPI00308717 RefSeq:NP_766139.2 UniGene:Mm.39001
ProteinModelPortal:Q8BKF1 SMR:Q8BKF1 STRING:Q8BKF1
PhosphoSite:Q8BKF1 PaxDb:Q8BKF1 PRIDE:Q8BKF1
Ensembl:ENSMUST00000020580 GeneID:216151 KEGG:mmu:216151
GeneTree:ENSGT00390000008060 InParanoid:Q8BKF1 OrthoDB:EOG4CZBF9
NextBio:375012 Bgee:Q8BKF1 CleanEx:MM_POLRMT Genevestigator:Q8BKF1
GermOnline:ENSMUSG00000020329 Uniprot:Q8BKF1
Length = 1207
Score = 761 (272.9 bits), Expect = 1.5e-113, Sum P(3) = 1.5e-113
Identities = 157/371 (42%), Positives = 232/371 (62%)
Query: 640 SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 699
++NP+ G +WW+ A++P+Q LA C+ ++ A++S P + ISHLP+HQDGSCNGLQHYAAL
Sbjct: 846 ADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPAAYISHLPVHQDGSCNGLQHYAAL 905
Query: 700 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 759
GR+++ AA+VNL + P DVY E+A +V E ++D+ K+ + +A++L + RK
Sbjct: 906 GRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQDA-KEGLR-----VAQVLEGFISRK 959
Query: 760 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGEIFE 817
+VKQTVMT VYGVT G R QI++RL E ++D Q F A+ Y + +L E+F
Sbjct: 960 VVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFKSLQEMFT 1016
Query: 818 AARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR---E 874
+ R+I WL + A +I+ PV W TPLG+P++QPY + + ++ LQ + L E
Sbjct: 1017 STRAIQHWLTESANLISHAGWPVEWVTPLGIPIIQPYHRESKVQVKGGLQSITLTSSVDE 1076
Query: 875 GNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQI 934
KQ+ FPPNF+HSLD SHMM+TA+ C GL F VHD FWTHA D+ MN++
Sbjct: 1077 SQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLIFVSVHDCFWTHAADIPTMNEV 1136
Query: 935 LRKKFVELYNMPMLENL-------------LESFQTSYPTL------SFPPLPERGNFDL 975
R++FV L++ P+LE+L ++S ++S L + LP+ G FDL
Sbjct: 1137 CREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSERALVTKLQETLQSLPKTGTFDL 1196
Query: 976 EEVLESPYFFN 986
+V+ S YFF+
Sbjct: 1197 GQVIRSTYFFS 1207
Score = 376 (137.4 bits), Expect = 1.5e-113, Sum P(3) = 1.5e-113
Identities = 100/293 (34%), Positives = 150/293 (51%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+PW +LG +L ELL++ VQ P + A R + + ++ +
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVYSFRSYR 587
Query: 415 RYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR-THG 470
+ G+++ P L+ +A+ L VPML PP W + G YL + +MR T G
Sbjct: 588 QVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEG 647
Query: 471 SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA-GLVD-RN 528
+ + Q L+ + +AL LG+ WRVN +L ++ I+ G + G+ R+
Sbjct: 648 TTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRS 707
Query: 529 DVLIPEK-PLSEDMTEVQKWKWSVRKAK--KINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ P + L T V K + A+ K+ +E HS R + +LS+A+ ++ F+
Sbjct: 708 EAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLRHRV-FW 766
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 767 LPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL 819
Score = 38 (18.4 bits), Expect = 1.5e-113, Sum P(3) = 1.5e-113
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 322 LSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGR 359
L EK + ++R + + K+ + + ++E K W +
Sbjct: 101 LEAEKRVKQRRQKEVDQQKQALTQEFWTLHKEPKIWNK 138
>UNIPROTKB|O00411 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase, mitochondrial"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IDA;TAS]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=IDA;TAS] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005759 "mitochondrial matrix" evidence=TAS] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA]
Reactome:REACT_71 InterPro:IPR002092 InterPro:IPR024075
Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900 GO:GO:0003677
GO:GO:0042645 Reactome:REACT_1788 GO:GO:0003899 EMBL:AC004449
EMBL:U75370 IPI:IPI00298738 RefSeq:NP_005026.3 UniGene:Hs.254113
PDB:3SPA PDBsum:3SPA ProteinModelPortal:O00411 SMR:O00411
DIP:DIP-56412N IntAct:O00411 MINT:MINT-1142772 STRING:O00411
PhosphoSite:O00411 PaxDb:O00411 PRIDE:O00411
Ensembl:ENST00000215591 GeneID:5442 KEGG:hsa:5442 UCSC:uc002lpf.1
CTD:5442 GeneCards:GC19M000617 H-InvDB:HIX0027511
H-InvDB:HIX0059707 HGNC:HGNC:9200 HPA:HPA006366 MIM:601778
neXtProt:NX_O00411 PharmGKB:PA33522 eggNOG:COG5108
HOGENOM:HOG000044061 HOVERGEN:HBG078730 InParanoid:O00411 KO:K10908
OMA:WARKGSF PhylomeDB:O00411 GenomeRNAi:5442 NextBio:21059
Bgee:O00411 CleanEx:HS_POLRMT Genevestigator:O00411
GermOnline:ENSG00000099821 GO:GO:0006391 Gene3D:1.10.287.260
PANTHER:PTHR10102 Uniprot:O00411
Length = 1230
Score = 738 (264.8 bits), Expect = 2.5e-113, Sum P(2) = 2.5e-113
Identities = 168/419 (40%), Positives = 255/419 (60%)
Query: 590 LDF-RGRAYPMHPH-LNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF--SENPIN 645
L+F +GR P+ PH L+ L + + + PL K L + + + ++ ++ P+
Sbjct: 825 LEFAQGR--PLGPHGLDWLKIHLVN-LTGLKKREPLRKR-LAFAEEVMDDILDSADQPLT 880
Query: 646 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 705
G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNGLQHYAALGR+++
Sbjct: 881 GRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVG 940
Query: 706 AAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTV 765
AA+VNL + P DVYS +A +V E+ +R +D + + +A++L + RK+VKQTV
Sbjct: 941 AASVNLEPSDVPQDVYSGVAAQV-EVFRR---QDAQRGMR--VAQVLEGFITRKVVKQTV 994
Query: 766 MTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGEIFEAARSIM 823
MT VYGVT G R QI++RL E ++D Q F A+ Y + +L E+F R+I
Sbjct: 995 MTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQ 1051
Query: 824 GWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVLALQREGNLVE--- 879
WL + A++I+ V W TPLG+PV+QPY + + I +Q + G++
Sbjct: 1052 HWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPN 1111
Query: 880 IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKF 939
RKQ+ FPPNF+HSLD SHMM+TA+ C GL F VHD +WTHA DV MNQ+ R++F
Sbjct: 1112 TRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQF 1171
Query: 940 VELYNMPMLENL----LESF--------QTSYPTLSFPPLPERGNFDLEEVLESPYFFN 986
V L++ P+L++L ++ F + S + +P+ G FDLE+V S YFF+
Sbjct: 1172 VRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQAVPKPGAFDLEQVKRSTYFFS 1230
Score = 416 (151.5 bits), Expect = 2.5e-113, Sum P(2) = 2.5e-113
Identities = 141/507 (27%), Positives = 235/507 (46%)
Query: 147 PPWFSSIFLKGLYKRIKLQEYREMKK--RKFNLLRRRQVKQETEAWERMVD-EYKELEAK 203
PP +S L+ +Y + Y ++ + L +Q+ E + +V E L +K
Sbjct: 366 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSK 425
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAI-EREQKMQRTKKQ-KAAYAPHIELLPADKVAV 261
+ K L ++ W L A+ E + +++R + + + P + LL +V
Sbjct: 426 EV-KHARKTLKTLRDQ---WEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVR 481
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV 321
+++ + L G + +A + Q R+ ++ +N+ RK + +
Sbjct: 482 MLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDA 541
Query: 322 LSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQH 381
E L R+ L A + L+ + PW Q +LG L E+L++ Q
Sbjct: 542 EVPEPCLPRQYWEEL-------GAPEALREQ---PWPLPVQMELGKLLAEMLVQAT--QM 589
Query: 382 PVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLEGLDRSAKHMLI-- 438
P + D +P R +L H + ++ G+++ P ++ L+++A+ L
Sbjct: 590 PCS-LD------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQLLEKAAEPTLTFE 642
Query: 439 -PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTL 496
VPML PP W + G +L P+ +MRT G+ + QE L++ + +AL L
Sbjct: 643 AVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQL 702
Query: 497 GSTKWRVNKQVLS-VLESIWVSGGNIAGL-VDRNDV-LIPEKPLSEDMTEVQK--WKWSV 551
G+ WRVN +VL VL+ G G+ ++ PE L +K + +
Sbjct: 703 GNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELRREL 762
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
+K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP PH NHL SDV
Sbjct: 763 AHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDVA 821
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANL 638
R +LEFA+GRPLG GL WLKIHL NL
Sbjct: 822 RALLEFAQGRPLGPHGLDWLKIHLVNL 848
Score = 40 (19.1 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 211 PNLPHIKGLFLGWFGPL--SEAIEREQKMQRTKKQKAAYAPHIELL 254
P LP +G G GP S A +EQ R K H+ELL
Sbjct: 23 PGLPGKEGTAGGVCGPRRSSSASPQEQDQDRRKDWG-----HVELL 63
>UNIPROTKB|K7EKS3 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 EMBL:CH471242 EMBL:AC004449 HGNC:HGNC:9200
Gene3D:1.10.287.260 PANTHER:PTHR10102 Ensembl:ENST00000588649
Uniprot:K7EKS3
Length = 1245
Score = 738 (264.8 bits), Expect = 2.8e-113, Sum P(2) = 2.8e-113
Identities = 168/419 (40%), Positives = 255/419 (60%)
Query: 590 LDF-RGRAYPMHPH-LNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF--SENPIN 645
L+F +GR P+ PH L+ L + + + PL K L + + + ++ ++ P+
Sbjct: 840 LEFAQGR--PLGPHGLDWLKIHLVN-LTGLKKREPLRKR-LAFAEEVMDDILDSADQPLT 895
Query: 646 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 705
G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNGLQHYAALGR+++
Sbjct: 896 GRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVG 955
Query: 706 AAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTV 765
AA+VNL + P DVYS +A +V E+ +R +D + + +A++L + RK+VKQTV
Sbjct: 956 AASVNLEPSDVPQDVYSGVAAQV-EVFRR---QDAQRGMR--VAQVLEGFITRKVVKQTV 1009
Query: 766 MTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGEIFEAARSIM 823
MT VYGVT G R QI++RL E ++D Q F A+ Y + +L E+F R+I
Sbjct: 1010 MTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQ 1066
Query: 824 GWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVLALQREGNLVE--- 879
WL + A++I+ V W TPLG+PV+QPY + + I +Q + G++
Sbjct: 1067 HWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPN 1126
Query: 880 IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKF 939
RKQ+ FPPNF+HSLD SHMM+TA+ C GL F VHD +WTHA DV MNQ+ R++F
Sbjct: 1127 TRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQF 1186
Query: 940 VELYNMPMLENL----LESF--------QTSYPTLSFPPLPERGNFDLEEVLESPYFFN 986
V L++ P+L++L ++ F + S + +P+ G FDLE+V S YFF+
Sbjct: 1187 VRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQAVPKPGAFDLEQVKRSTYFFS 1245
Score = 416 (151.5 bits), Expect = 2.8e-113, Sum P(2) = 2.8e-113
Identities = 141/507 (27%), Positives = 235/507 (46%)
Query: 147 PPWFSSIFLKGLYKRIKLQEYREMKK--RKFNLLRRRQVKQETEAWERMVD-EYKELEAK 203
PP +S L+ +Y + Y ++ + L +Q+ E + +V E L +K
Sbjct: 381 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSK 440
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAI-EREQKMQRTKKQ-KAAYAPHIELLPADKVAV 261
+ K L ++ W L A+ E + +++R + + + P + LL +V
Sbjct: 441 EV-KHARKTLKTLRDQ---WEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVR 496
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV 321
+++ + L G + +A + Q R+ ++ +N+ RK + +
Sbjct: 497 MLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDA 556
Query: 322 LSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQH 381
E L R+ L A + L+ + PW Q +LG L E+L++ Q
Sbjct: 557 EVPEPCLPRQYWEEL-------GAPEALREQ---PWPLPVQMELGKLLAEMLVQAT--QM 604
Query: 382 PVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLEGLDRSAKHMLI-- 438
P + D +P R +L H + ++ G+++ P ++ L+++A+ L
Sbjct: 605 PCS-LD------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQLLEKAAEPTLTFE 657
Query: 439 -PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTL 496
VPML PP W + G +L P+ +MRT G+ + QE L++ + +AL L
Sbjct: 658 AVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQL 717
Query: 497 GSTKWRVNKQVLS-VLESIWVSGGNIAGL-VDRNDV-LIPEKPLSEDMTEVQK--WKWSV 551
G+ WRVN +VL VL+ G G+ ++ PE L +K + +
Sbjct: 718 GNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELRREL 777
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
+K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP PH NHL SDV
Sbjct: 778 AHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDVA 836
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANL 638
R +LEFA+GRPLG GL WLKIHL NL
Sbjct: 837 RALLEFAQGRPLGPHGLDWLKIHLVNL 863
Score = 40 (19.1 bits), Expect = 1.3e-73, Sum P(2) = 1.3e-73
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 211 PNLPHIKGLFLGWFGPL--SEAIEREQKMQRTKKQKAAYAPHIELL 254
P LP +G G GP S A +EQ R K H+ELL
Sbjct: 38 PGLPGKEGTAGGVCGPRRSSSASPQEQDQDRRKDWG-----HVELL 78
>UNIPROTKB|J9P8Y8 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002092 InterPro:IPR006019
InterPro:IPR006020 InterPro:IPR024075 Pfam:PF00640 Pfam:PF00940
PRINTS:PR00629 PROSITE:PS00489 PROSITE:PS00900 PROSITE:PS01179
SMART:SM00462 InterPro:IPR002885 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0035556 GO:GO:0003677 GO:GO:0006351
GO:GO:0005622 PROSITE:PS51375 GO:GO:0003899 Gene3D:1.10.287.260
PANTHER:PTHR10102 GeneTree:ENSGT00390000008060 EMBL:AAEX03012675
EMBL:AAEX03012674 Ensembl:ENSCAFT00000046349 Uniprot:J9P8Y8
Length = 1414
Score = 734 (263.4 bits), Expect = 7.4e-112, Sum P(2) = 7.4e-112
Identities = 137/315 (43%), Positives = 203/315 (64%)
Query: 640 SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 699
++ P+ G +WW+ ++P+Q LA C+ ++ A++S P + +SH P+HQDGSCNGLQHYAAL
Sbjct: 862 ADRPMTGRKWWMEVDEPWQALACCMEIARAVRSPDPTAFVSHFPVHQDGSCNGLQHYAAL 921
Query: 700 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 759
GR+++ AA+VNL+ + P DVYS +A +V ++D+ + +A++L + RK
Sbjct: 922 GRDSIGAASVNLLPSDFPQDVYSGVAAQVEVFRRQDAQRG------VRVAQVLEGFISRK 975
Query: 760 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAA 819
+VKQTVMT VYGVT G R QI+RRL E + + ++ A+ Y + +L E+F
Sbjct: 976 VVKQTVMTVVYGVTRYGGRLQIERRLRELSNFPQEF-VWEASHYLVRQVFNSLQEMFSGT 1034
Query: 820 RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVE 879
R+I WL + A++IA V W TPLG+P++QPY ++ + +I +Q L G+ +
Sbjct: 1035 RAIQHWLTESARLIAQTGSAVEWVTPLGIPIIQPYHRDSKVMIGGGIQSLTFSNSGDTTQ 1094
Query: 880 ---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILR 936
KQ+ FPPNF+HSLD SHMM+TA+ C GL F VHD FWTHA DV MNQ+ R
Sbjct: 1095 KPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCFWTHAADVAVMNQVCR 1154
Query: 937 KKFVELYNMPMLENL 951
++FV L++ P+L NL
Sbjct: 1155 EQFVHLHSQPILHNL 1169
Score = 411 (149.7 bits), Expect = 7.4e-112, Sum P(2) = 7.4e-112
Identities = 106/293 (36%), Positives = 152/293 (51%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+PW +LG RL ELL+ET + + A + P H + ++ +
Sbjct: 552 QPWPLPVLVELGKRLAELLVETVRIPGSL-AAPQGACTLIPVLYHVYSF-------RSFR 603
Query: 415 RYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HG 470
+ G+++ P E L +A+H LI VPML PP W + G +L P+ +MR+ G
Sbjct: 604 QIGILKPHPAFTELLAAAAEHTLIFEAAEVPMLCPPLPWTSPHTGAFLLSPTKLMRSLEG 663
Query: 471 SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS-VLESIWVSGGNIAGL-VDRN 528
+ + Q L S + +AL LG+ WRVN +VL VLE G G+ +
Sbjct: 664 TMQHQRLLDSCPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFAAKGCPRLGVPAPPS 723
Query: 529 DV-LIPEKPLSEDMTEVQKW--KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ PE L D + QK + + + K+ +E HS R D +LS+A+ ++ F+
Sbjct: 724 EAPRPPEGRLPPDASPAQKAEVRRELARCLKVAREMHSLRSDALYRLSLAQHLRHRV-FW 782
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLKIHL NL
Sbjct: 783 LPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNL 835
Score = 43 (20.2 bits), Expect = 5.0e-73, Sum P(2) = 5.0e-73
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 457 GYLFLPSYVMRTHGSR-KQQEAL 478
G+L L +V+ TH SR +QQ+ L
Sbjct: 222 GHLPLAHHVLVTHHSRARQQQQL 244
Score = 37 (18.1 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 623 LGKSGLRWLKIHLANLFSENPIN 645
LGKS LR+ + +A S + +N
Sbjct: 1236 LGKSNLRFAGMSIAVSISTDGLN 1258
>UNIPROTKB|E1BZ13 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
InterPro:IPR002885 GO:GO:0003677 GO:GO:0006351 GO:GO:0042645
PROSITE:PS51375 GO:GO:0003899 OMA:WARKGSF Gene3D:1.10.287.260
PANTHER:PTHR10102 GeneTree:ENSGT00390000008060 EMBL:AADN02066671
EMBL:AADN02066672 EMBL:AADN02066673 IPI:IPI00572283
Ensembl:ENSGALT00000002098 Uniprot:E1BZ13
Length = 1018
Score = 704 (252.9 bits), Expect = 1.4e-111, Sum P(2) = 1.4e-111
Identities = 151/371 (40%), Positives = 221/371 (59%)
Query: 640 SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 699
+++P+ G +WW+ ++P+Q LA C+ +++A +S P + ISH P+HQDGSCNGLQHYAAL
Sbjct: 656 ADHPLTGRKWWMNTDEPWQVLACCMEIAKASRSPDPAAFISHFPVHQDGSCNGLQHYAAL 715
Query: 700 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 759
GR+ + A +VNL+ P DVYS +A +V E K+D+ + +A++L + RK
Sbjct: 716 GRDLIGAISVNLMPCNVPQDVYSAVAQQVEEFRKKDAEEG------LRIAQVLEGFIGRK 769
Query: 760 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAA 819
+VKQTVMT VYGVT G R Q+++RL+E + L+ A+ Y K + E+F A
Sbjct: 770 VVKQTVMTVVYGVTRYGGRLQMEKRLKEIEF--PEEYLWEASHYLVKQVFNGIKEMFSAT 827
Query: 820 RSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK---NERHLIRTSLQVLALQ--RE 874
R I WL + AK+IA + V W TPLGLP+VQPY + H+ ++ RE
Sbjct: 828 RDIQNWLTESAKLIAQSGRTVEWVTPLGLPIVQPYYRIRPTVPHIGHVGMEQAGASHLRE 887
Query: 875 GNLVEIRK-----QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVD 929
+ + K Q+ AFPPNF+HSLD +HMM+TA+ C GL F VHD +WTHA VD
Sbjct: 888 LSSQPLTKPDTVKQKNAFPPNFIHSLDSTHMMLTALHCFRQGLTFVSVHDCYWTHALTVD 947
Query: 930 EMNQILRKKFVELYNMPMLENLLESFQTSY--PTLSFPPL------------PERGNFDL 975
MN+I R++FV L++ +LE+L + +Y P L P+ G F+L
Sbjct: 948 IMNEICRQQFVALHSQKILEDLSKFMLENYCSPDRESRALWQKKLMEQLSNVPKTGEFNL 1007
Query: 976 EEVLESPYFFN 986
+V++S YFF+
Sbjct: 1008 NKVIDSTYFFS 1018
Score = 423 (154.0 bits), Expect = 1.4e-111, Sum P(2) = 1.4e-111
Identities = 141/505 (27%), Positives = 234/505 (46%)
Query: 147 PPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
P + LK Y K+ Y ++ L R Q + E E + E E K +
Sbjct: 145 PEICKTALLKNFYSEEKMVSYPKLDFTVQELRERFQQQLEMELNSTITIESVE-STKPLT 203
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQ-KMQRTKKQK--AAYAPHIELLPADKVAVIV 263
+ + W G + +A+++ + M + K + P++ LLP ++ I+
Sbjct: 204 PQAIKARQQLASFRSQWRGAILQALQKSKHNMSQVKTMSGHSVLYPYLCLLPDEEYVDIM 263
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF-LEKTKN-YKRK-KIIADTEE 320
M + L G E V + + + ++HS LEK + YK ++A +
Sbjct: 264 MQILNSLSPQG-ESLAVLARELGSKVYNRYLTQRKLHSGQLEKVQEIYKNYIHLLAKDSQ 322
Query: 321 VLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV- 379
V S +E L + K V E + LK + + W +LG L+E+L+ V
Sbjct: 323 VGSPPREYLPREY----WEKLVAEPE--LKRDCS--WPYVLLMRLGMYLLEILVHAVKVP 374
Query: 380 QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI- 438
++ +NP P + P H + +++ + G+++ P+ + + +A+ ML
Sbjct: 375 RNTLNPR--LPSKLIPVLYHIYSF-------RSSWQVGLIKPHPIFSQIVSDAAETMLTF 425
Query: 439 --PYVPMLVPPKKWKGYNKGGYLFLPSYVMR-THGSRKQQEALKSVTGNCMKKVFEALDT 495
+PML PP W + G ++ + +MR G+ + Q+ L + V +AL+
Sbjct: 426 NSSAIPMLCPPVPWTSPHFGAFVLSDTKLMRYVDGAIQHQQLLDQCPQVNLHPVLDALNQ 485
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEV--QKWKWSVRK 553
LG+ W++N+ VL ++ SI+ GN + P+ P+S + + K +
Sbjct: 486 LGNCAWKINQPVLDIIISIFNDKGNEKLDIPPPVSEAPKPPVSPSSSSALHKSQKHELLL 545
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
KK E HS R D KLS+A ++D+ F++PHN+DFRGR YP P+ NHL +DV R
Sbjct: 546 CKKKAAEMHSLRMDALYKLSIANYVRDKV-FWFPHNMDFRGRTYPCPPYFNHLGNDVTRA 604
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANL 638
+L FAEGRPLG GL WLKIHL NL
Sbjct: 605 ILLFAEGRPLGPKGLDWLKIHLINL 629
>UNIPROTKB|E1BCZ0 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
InterPro:IPR002885 GO:GO:0003677 GO:GO:0006351 GO:GO:0042645
PROSITE:PS51375 TIGRFAMs:TIGR00756 GO:GO:0003899 OMA:WARKGSF
Gene3D:1.10.287.260 PANTHER:PTHR10102 GeneTree:ENSGT00390000008060
EMBL:DAAA02020222 IPI:IPI00698218 Ensembl:ENSBTAT00000020034
Uniprot:E1BCZ0
Length = 1221
Score = 726 (260.6 bits), Expect = 5.8e-109, Sum P(3) = 5.8e-109
Identities = 152/366 (41%), Positives = 222/366 (60%)
Query: 640 SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 699
+E P+ G +WW+ A++P+Q LA C+ +++ + S P + ISH P+HQDGSCNGLQHYAAL
Sbjct: 865 AERPMTGRKWWMEADEPWQTLACCMEIAQVVHSPDPTTYISHFPVHQDGSCNGLQHYAAL 924
Query: 700 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 759
GR++ A +VNL + P DVYSE+A +V E+ +R K + +A++L + RK
Sbjct: 925 GRDSTGATSVNLSPSDLPQDVYSEVAAQV-EVFRRQDAKQGVR-----VAQVLEGFISRK 978
Query: 760 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTALGEIFE 817
+VKQTVMT VYGVT G R QI++RL E + D Q F A+ Y + +L E+F
Sbjct: 979 VVKQTVMTVVYGVTRYGGRLQIEKRLRE---LEDFPQEFVWEASHYLVRQVFNSLQEMFS 1035
Query: 818 AARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNL 877
RSI WL + A++I+ V W TPLG+P++QPY ++ + +I+ LQ L +
Sbjct: 1036 GTRSIQRWLTESARLISLTGSAVEWITPLGVPIIQPYHRDSKVMIKGGLQSLTFSSSVDT 1095
Query: 878 VE---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQI 934
+ KQ+ FPPNF+HSLD +HMM+TA+ C GL F VHD FWTHA DV MNQ+
Sbjct: 1096 NQKPNTLKQKNGFPPNFIHSLDSTHMMLTALYCYRKGLTFVSVHDCFWTHAADVGVMNQV 1155
Query: 935 LRKKFVELYNMPMLENL----LESFQTSYPTL----------SFPPLPERGNFDLEEVLE 980
R++FV L++ P+L +L ++ F + T + +P G FDL++V
Sbjct: 1156 CREQFVRLHSQPILHDLSRFLIKRFCSDSRTSKSMWVSRLKDTLLSVPPTGTFDLDQVKR 1215
Query: 981 SPYFFN 986
S +FF+
Sbjct: 1216 STFFFS 1221
Score = 363 (132.8 bits), Expect = 5.8e-109, Sum P(3) = 5.8e-109
Identities = 107/350 (30%), Positives = 169/350 (48%)
Query: 310 KRKKIIADTEEVLSKEKELLR-----KRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAK 364
KRK++ EE+ + E L +V ++ EA + + +PW +
Sbjct: 499 KRKRLRNQVEELEQRYFEYLHLLASDTQVAEPCLPRQHWEALGVPEAPPEQPWPVSVLVQ 558
Query: 365 LGSRLVELLIETAYVQHPVN-PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDP 423
LG +L E+L+ VQ P + A P + P H + ++ ++ G+++ P
Sbjct: 559 LGKQLAEVLVRA--VQMPSSLAAPRGPSTLIPVLYHVYSF-------RSFRQIGILKPHP 609
Query: 424 LVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALK 479
+ + +A+ LI VPML PP W + G +L P+ +MR+ G+++ Q L+
Sbjct: 610 AFTQLQETAAERTLIFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSLEGTQQHQLLLE 669
Query: 480 SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP--- 536
+ +AL LG+ WRVN +VL ++ ++ G V P P
Sbjct: 670 RCPPAELHGALDALTQLGNCAWRVNGRVLDLVLDLFRDKGCPRLGVPAPPTEAPRPPEGR 729
Query: 537 ------LSEDMTEVQKWKWSVRKAK--KINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
L + + K + A+ K+ +E S R D +LS+A+ +++ F+ PH
Sbjct: 730 QTPKGCLLPEASPADKAEMRRELARRLKVAREMQSLRADALYRLSLAQHLRNHV-FWLPH 788
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
N+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLKIHL NL
Sbjct: 789 NMDFRGRTYPCSPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLINL 838
Score = 46 (21.3 bits), Expect = 5.8e-109, Sum P(3) = 5.8e-109
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 216 IKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAP 249
++GLF PLS ERE+ ++ +K + A++P
Sbjct: 317 LQGLFSAV--PLSTE-EREELLRAVRKARPAFSP 347
Score = 40 (19.1 bits), Expect = 2.5e-108, Sum P(3) = 2.5e-108
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLA-PNLP 214
+L+R++++ + E E+ EY L A + ++A P LP
Sbjct: 497 VLKRKRLRNQVEELEQRYFEYLHLLAS--DTQVAEPCLP 533
Score = 40 (19.1 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 322 LSKEKELLRKRVNSLI-KSKRVMEAQKLLKNEETKPWGRDTQAKLGSRL 369
L K+++L+ KR+ L K +++E K +P R KL +L
Sbjct: 121 LDKDQQLIEKRLQQLEGKLPKIVEKSTWEKRLRMEP--RLLSRKLAGQL 167
>CGD|CAL0005126 [details] [associations]
symbol:RPO41 species:5476 "Candida albicans" [GO:0042645
"mitochondrial nucleoid" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0034245 "mitochondrial DNA-directed RNA
polymerase complex" evidence=IEA] [GO:0006390 "transcription from
mitochondrial promoter" evidence=IEA] [GO:0000002 "mitochondrial
genome maintenance" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0001044 "mitochondrial RNA
polymerase regulatory region sequence-specific DNA binding"
evidence=IEA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 CGD:CAL0005126 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0003899
eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260 PANTHER:PTHR10102
RefSeq:XP_718901.1 RefSeq:XP_719003.1 STRING:Q5ABC9 GeneID:3639378
GeneID:3639479 KEGG:cal:CaO19.13462 KEGG:cal:CaO19.6041
Uniprot:Q5ABC9
Length = 1300
Score = 655 (235.6 bits), Expect = 1.9e-105, Sum P(3) = 1.9e-105
Identities = 148/349 (42%), Positives = 208/349 (59%)
Query: 642 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 701
+P WW AE P+Q L+ C L+EA K P +SHLP+HQDG+CNGLQHYAALG
Sbjct: 856 DPFATDAWWQKAEKPWQALSVCFELAEAYKLDDPTKFVSHLPVHQDGTCNGLQHYAALGG 915
Query: 702 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 761
+ A VNL +KP DVY+ +A V +K D+ K LA L D++ RK+V
Sbjct: 916 DVEGANQVNLNPSDKPQDVYTYVAKLVETRVKADAEKGDE------LAIFLQDKIKRKVV 969
Query: 762 KQTVMTSVYGVTFVGAREQIKRRL-----EEKGHITDDR----QLFAAACYAAKVTLTAL 812
KQTVMT+VYGVTF+GA EQI++++ ++ H R Q+FA+ +
Sbjct: 970 KQTVMTNVYGVTFIGAIEQIRKQIIHLFPKDADHHAAARYLAVQVFASIRELFENAHFIQ 1029
Query: 813 GEIFEAARSIMGWLG-DCAKVIASENQ---PVRWTTPLGLPVVQPYCKNERHLIRTSLQV 868
+ E+A+ I + D + SE + V WTTPLGLP VQPY +++ ++T++Q
Sbjct: 1030 AWLTESAKRITKSVTLDFGESQYSEQELLSTVIWTTPLGLPCVQPYRLHKKKQLKTAVQD 1089
Query: 869 LALQREGNL--VEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHAC 926
L + N V+ RKQ+ FPPNF+HSLD +HM+MTA C + L+FA VHDSFWTHA
Sbjct: 1090 LNIVMPSNTSAVDSRKQQNGFPPNFIHSLDATHMLMTATKCAEFDLNFASVHDSFWTHAA 1149
Query: 927 DVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDL 975
DV +MN+I+R++FV+L+ ++E L E F Y ++ LP N +L
Sbjct: 1150 DVPQMNRIIREQFVKLHTTNLIELLKEEFSERYKD-NYQVLPIPNNHEL 1197
Score = 430 (156.4 bits), Expect = 1.9e-105, Sum P(3) = 1.9e-105
Identities = 141/501 (28%), Positives = 225/501 (44%)
Query: 158 LYKRIKLQEYREMKKRKFNLLRRRQVKQ-ETEAWERMVDEYKELEAKMIEKRLAPNLPHI 216
+Y ++K +E R+ N+ + KQ E E +++K + + +KR NL
Sbjct: 355 MYSKLKTEEQRQAFNEALNVFNLERQKQIEIRGIEGAKEKWKH-DFEESQKRGDLNLS-- 411
Query: 217 KGL---FLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMA 273
KGL W + +E+E K+ +A + ++ D ++
Sbjct: 412 KGLNAQCYKWLQDVLPVLEKEYKLC-----EALINGNNSVIEKDDPNAKDRAMYAPFILK 466
Query: 274 GHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE--LLRK 331
D+ + + I + ++HS + ++ K I + + E L K
Sbjct: 467 ISPDKAIIIT---------ILELFKLHSTGGVVRGFRAYKAIQSVGKAIEAEYRIGLQAK 517
Query: 332 RVNSLIKSKRVM-EAQKLLK------NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
+ N L K + + QKL++ NE T W T+A++G LV +L+ A V
Sbjct: 518 KENKLFSQKHLSPQLQKLMRRTMQKGNESTPEWDDATRARIGGVLVSILMSVAKVNVRKE 577
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD-RSAKHMLIPY-VP 442
D PAF H + I + R GV++ + L S + P +P
Sbjct: 578 TPQGLIEDFHPAFYHGMQFIAGN-------RVGVIKVHTDISNILSGTSLTESIQPQALP 630
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT--GNCMKKVFEALDTLGSTK 500
MLV PK W + GG L+ + ++R S + + LK+ GN + VFE L+ LG+T
Sbjct: 631 MLVEPKPWNSFYGGGSLYSKTPLVRVKDSPETEAYLKAANERGN-LTGVFEGLNVLGNTA 689
Query: 501 WRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558
W VNK+V +V+ W SG + V L + P + D ++ S +A
Sbjct: 690 WTVNKKVFNVISHYWNSGEEFLSIPPVSEEPQLPQDIPGNSDPQKLLHHTTSKYQALDEY 749
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
SQRCD +L +AR E+ ++PHNLDFRGRAYP+ PH NHL D+ R + F
Sbjct: 750 ISNKSQRCDNNYRLEIARAFIGEK-LFFPHNLDFRGRAYPISPHFNHLGGDLTRSLFLFW 808
Query: 619 EGRPLGKSGLRWLKIHLANLF 639
+G+ LG+ GL WLKI LAN++
Sbjct: 809 DGKELGEEGLNWLKIQLANVY 829
Score = 75 (31.5 bits), Expect = 1.9e-105, Sum P(3) = 1.9e-105
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 954 SFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 986
SFQ P + FP +P +G FD+ V +S YFF+
Sbjct: 1269 SFQILVP-IQFPEVPSKGEFDVNLVKKSQYFFS 1300
Score = 46 (21.3 bits), Expect = 3.0e-65, Sum P(4) = 3.0e-65
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 312 KKIIADTE-EVLSKEKELLRKRVNSL-IKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRL 369
+KII D + EVL+++ ++ ++N + SK E Q+ NE + + Q ++ R
Sbjct: 330 EKIIEDVDDEVLNQD--IMSGKINYFEMYSKLKTEEQRQAFNEALNVFNLERQKQIEIRG 387
Query: 370 VE 371
+E
Sbjct: 388 IE 389
Score = 37 (18.1 bits), Expect = 3.0e-65, Sum P(4) = 3.0e-65
Identities = 19/122 (15%), Positives = 51/122 (41%)
Query: 164 LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLG- 222
L+ Y K + L K + + E++V Y + + AP + ++K +
Sbjct: 68 LKNYHNNKITYRSYLNLNPEKYDLDEEEKIVKYYSSKNDGVEVQPYAPEIQYLKNILESF 127
Query: 223 ----WFGPLSEAIEREQKMQRTKKQKAAYAPHIE-LLPADKVAVIVMHKMMGLVMAGHED 277
+F + + ++ K+ + ++E +L D +++ ++ ++G + +D
Sbjct: 128 SEQKYFDKIDQVLKSLSKLVNATEFTDICNKYLENILQDDSLSLQDLNSIIGQL----QD 183
Query: 278 RC 279
+C
Sbjct: 184 KC 185
>FB|FBgn0261938 [details] [associations]
symbol:mtRNApol "mitochondrial RNA polymerase" species:7227
"Drosophila melanogaster" [GO:0005739 "mitochondrion" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
InterPro:IPR002885 EMBL:AE014134 GO:GO:0003677 GO:GO:0006351
PROSITE:PS51375 TIGRFAMs:TIGR00756 GO:GO:0003899 KO:K10908
OMA:WARKGSF Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 HSSP:P00573 FlyBase:FBgn0261938
EMBL:BT011381 RefSeq:NP_608565.1 UniGene:Dm.12209 SMR:Q9VPW4
STRING:Q9VPW4 EnsemblMetazoa:FBtr0077989 EnsemblMetazoa:FBtr0332273
GeneID:33285 KEGG:dme:Dmel_CG4644 CTD:33285 InParanoid:Q9VPW4
GenomeRNAi:33285 NextBio:782857 Uniprot:Q9VPW4
Length = 1369
Score = 690 (248.0 bits), Expect = 5.9e-103, Sum P(4) = 5.9e-103
Identities = 144/325 (44%), Positives = 202/325 (62%)
Query: 640 SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 699
++NP+ G WW +++P+Q LA C+ ++ + P + +S PIHQDGSCNGLQHYAAL
Sbjct: 1006 ADNPLTGRMWWSKSDEPWQTLACCMEIANVHRCPDPAAYLSRFPIHQDGSCNGLQHYAAL 1065
Query: 700 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 759
GR+ A +VNL P DVYS +A V + K D+ H +A+ L V RK
Sbjct: 1066 GRDEAGARSVNLAPSAIPQDVYSAVAALVEKSRKADAQN--GLH----VAEALAGFVRRK 1119
Query: 760 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAA 819
++KQTVMT+VYGVT GAR QI R+L++ D ++ A+ Y T +L E+F +
Sbjct: 1120 VIKQTVMTTVYGVTRYGARLQIARQLKDIDDFPKD-WVWPASTYLTTKTFESLREMFTST 1178
Query: 820 RSIMGWLGDCAKVIASE-NQPVRWTTPLGLPVVQPYCKNE-RHLIRTSLQVLALQREGNL 877
R I W +CA++I+ +Q V W TPLGLPVVQPY + E +H R+ +V A +L
Sbjct: 1179 REIQDWFTECARLISGVCSQNVEWVTPLGLPVVQPYNRQEMKHSPRSGFKVSA-NMPMDL 1237
Query: 878 VE---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQI 934
E I KQ+ AFPPNF+HSLD SHMM+T++ C G+ F VHD FWTHA V E+N++
Sbjct: 1238 YERPNILKQKNAFPPNFIHSLDSSHMMLTSLHCERQGITFVSVHDCFWTHANTVPELNRM 1297
Query: 935 LRKKFVELYNMPMLENLLESFQTSY 959
R++FV L++ P+LE L E + +Y
Sbjct: 1298 CREQFVALHSQPILEQLSEFMRHTY 1322
Score = 349 (127.9 bits), Expect = 5.9e-103, Sum P(4) = 5.9e-103
Identities = 119/442 (26%), Positives = 203/442 (45%)
Query: 223 WFGPLSEAIEREQKMQRTKKQKAA-----YAPHIELLPADKVAVIVMHKMMGLVMAGHED 277
W +S AI R+ R + + Y +++ L A A I++ ++ L G E
Sbjct: 550 WRKQISAAIVRDLNTLRAQVRFKPHGFMNYYTYLKTLDASHFADILIKELYKLA-EGSET 608
Query: 278 RCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK--EKELLRKRVNS 335
V Q +G ++Q +I K +I + E+ ++ R+
Sbjct: 609 FSPTVGQLYKELGQKVQQRYQIEQKKHNGTLEKIGEIYSSYCELWGSGMSQDNTRQAWQR 668
Query: 336 LIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ-HPVNPADYSPPDVR 394
L+ +R E+ + E PW + +G L +L+ + H + S +
Sbjct: 669 LVYEQR--ESGPSMDLLEV-PWPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQ 725
Query: 395 PA-FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKK 449
P F T+ ++ G+ + V+ P VL L R+++ + + VPML PP+
Sbjct: 726 PQNLLPAFYTLFRNQGRFVKEE---VKPHP-VLSRLFRASRQQTLTFDSNLVPMLCPPQP 781
Query: 450 WKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVL 508
W + GGYL + ++R H + +Q + + + + ++L+ L S WRVN Q+L
Sbjct: 782 WSTPHNGGYLLNKTELIRLPHQAIQQWDRIMASNPQHLYPALDSLNQLASVPWRVNTQLL 841
Query: 509 SVLESIWVSGGNIAGLVDRNDVLIPEKPL------------SEDMTEVQKWKWSVRKAKK 556
V+ ++ +GG++ V + +P P SED + + K R+ +
Sbjct: 842 DVIIKVFQNGGDVKLDVPQPPSSLPPLPTLPAKDAEGNATSSEDRAKQFRDKLGHRRKQA 901
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
E +S CD +LS+A+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L
Sbjct: 902 ---EMYSLWCDALYRLSLAQHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLI 957
Query: 617 FAEGRPLGKSGLRWLKIHLANL 638
F + +PLG GL WLK+H NL
Sbjct: 958 FDQAQPLGVDGLSWLKLHCINL 979
Score = 68 (29.0 bits), Expect = 5.9e-103, Sum P(4) = 5.9e-103
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 967 LPERGNFDLEEVLESPYFFN 986
+P++G+FDL VL+S YFF+
Sbjct: 1350 MPQKGDFDLRNVLDSVYFFS 1369
Score = 61 (26.5 bits), Expect = 7.7e-73, Sum P(4) = 7.7e-73
Identities = 25/72 (34%), Positives = 35/72 (48%)
Query: 188 EAWERMVDEYKELEAKM--IEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTK-KQK 244
+AW+R+V E +E M +E N+ G FL + L I+ + + R K K K
Sbjct: 664 QAWQRLVYEQRESGPSMDLLEVPWPSNVLTGVGRFL--YNILMRDIKIDAHIMRQKSKSK 721
Query: 245 AAYAPHIELLPA 256
AA P LLPA
Sbjct: 722 AAAQPQ-NLLPA 732
Score = 47 (21.6 bits), Expect = 5.9e-103, Sum P(4) = 5.9e-103
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 79 QDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCADLVIP 123
+D I+S MEN ++ DF + T + H+ ++ E + P
Sbjct: 221 RDIIES--MENDQHEADFGLSTTKVHPEEHEMLDPFEAIEPYISP 263
Score = 40 (19.1 bits), Expect = 3.2e-102, Sum P(4) = 3.2e-102
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 228 SEAIEREQKMQRTKKQKAAYAPHIELLPADKVAV 261
++A+ + +K +R +K + YA ++ELL + A+
Sbjct: 84 TDAVAQAKK-KRLRKPR--YAKYVELLEVTEQAI 114
Score = 38 (18.4 bits), Expect = 1.9e-70, Sum P(4) = 1.9e-70
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 292 AIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN 351
AIE I S L+K+K + + V +K K+ + +V+ + +R+ + + L N
Sbjct: 256 AIEPYI---SPLDKSKRSVTTVAVPNASAVTTKSKKRFKSKVHVNEEQERLAKQRALHIN 312
Query: 352 EET 354
T
Sbjct: 313 LNT 315
>GENEDB_PFALCIPARUM|PF11_0264 [details] [associations]
symbol:PF11_0264 "DNA-dependent RNA polymerase"
species:5833 "Plasmodium falciparum" [GO:0005739 "mitochondrion"
evidence=ISS] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739 GO:GO:0003677
GO:GO:0006351 EMBL:AE014186 GO:GO:0003899 KO:K10908
Gene3D:1.10.287.260 PANTHER:PTHR10102 RefSeq:XP_001347935.1
HSSP:P00573 ProteinModelPortal:Q8IIB0
EnsemblProtists:PF11_0264:mRNA GeneID:810811 KEGG:pfa:PF11_0264
EuPathDB:PlasmoDB:PF3D7_1125300 HOGENOM:HOG000282367
ProtClustDB:CLSZ2432452 Uniprot:Q8IIB0
Length = 1531
Score = 484 (175.4 bits), Expect = 1.1e-94, Sum P(5) = 1.1e-94
Identities = 103/258 (39%), Positives = 148/258 (57%)
Query: 734 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK-GHIT 792
R+SN + +K+ A D + RK+VKQT+MT YGVT +GA+ Q+K +++ G
Sbjct: 1275 RNSNSNVNKNELASYC-FKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKEL 1333
Query: 793 DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQ 852
D + + Y A ++ EIF+ A I W + +KV N P+ W +P+GLP Q
Sbjct: 1334 DKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQ 1393
Query: 853 PYCKNERHLIRTSLQVLA-LQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACR-DA 910
PY R L+ T LQ ++ + + + + KQR FPPNFVHSLD SH+MMTA
Sbjct: 1394 PYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVHSLDASHLMMTAEKMVIQN 1453
Query: 911 GLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLS--FPPLP 968
FA VHDS+W HAC+VD MNQ +R+ F+ LYN P+LEN+ +F+ + P P
Sbjct: 1454 NFSFAAVHDSYWAHACNVDIMNQFIRESFITLYNEPILENIYNNFRIRLGKFATKIPSSP 1513
Query: 969 ERGNFDLEEVLESPYFFN 986
E+G D+ V +S YFF+
Sbjct: 1514 EQGELDISMVKDSLYFFS 1531
Score = 351 (128.6 bits), Expect = 1.1e-94, Sum P(5) = 1.1e-94
Identities = 78/239 (32%), Positives = 132/239 (55%)
Query: 411 KTTKRYGVVECDPLVLEGLDRSA--KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
K YGV+ L +A H+ + Y+PM+ PK+W+ + +GG L L + +R
Sbjct: 884 KNNNWYGVIHMRECCANYLLNNAINSHIPLNYLPMICKPKRWENF-EGGMLLLKNSFIRC 942
Query: 469 HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN 528
+ K L N +K + + +G+ W++NK++L +E ++ G I +
Sbjct: 943 N--IKPLFNLNVCNLNRIKNI---VSEIGNVGWKINKEILHYIEYAYIHGITIGKIPLYK 997
Query: 529 DVLIPEK-PLSEDMTE-VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
+ +P+ L E E ++K+ + ++N+ S+R KL+VA+ KD + Y+
Sbjct: 998 NYTLPKYINLKEQNNEEIKKYLLLKEEINRLNKCLISERPTFLQKLAVAKTFKDNDIIYF 1057
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSENPIN 645
PHN+DFRGR YP+ PHL+H+S D+CR ++ FAE + +G GL WLKIHLAN F ++ ++
Sbjct: 1058 PHNIDFRGRMYPLSPHLHHMSDDICRSLITFAEQKEIGNKGLFWLKIHLANTFGKDKLS 1116
Score = 217 (81.4 bits), Expect = 1.1e-94, Sum P(5) = 1.1e-94
Identities = 42/110 (38%), Positives = 67/110 (60%)
Query: 628 LRWLKIHLANL--FSENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 685
++W+ ++ N+ ++ P + +W AE P+Q LA I+L AL+S + S +PI
Sbjct: 1121 IQWVDQNINNIKKLTQQPFDNIEFWNMAEKPWQALAVAIDLKNALESPNASKYKSSIPIQ 1180
Query: 686 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 735
QDG+CNGLQHYAALG++ AVN++ ++P D+YS + V +K D
Sbjct: 1181 QDGTCNGLQHYAALGKDKYGGKAVNIIPSDEPQDIYSVVLDIVISKIKND 1230
Score = 77 (32.2 bits), Expect = 1.1e-94, Sum P(5) = 1.1e-94
Identities = 16/89 (17%), Positives = 47/89 (52%)
Query: 165 QEYREMKKRKFNLLR-RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGW 223
+E + ++++ N++ RRQ+ E ++++ ++E +E + + + + + + ++L W
Sbjct: 394 EEKEKEEEKESNIINVRRQMLIERSSYKKAIEEAEEFVSNLHDLKKITEIQGLCKIYLNW 453
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYAPHIE 252
L + I ++ + KK+K + I+
Sbjct: 454 ISELEKRIILYKEKNKNKKKKKIFPDFID 482
Score = 59 (25.8 bits), Expect = 8.3e-93, Sum P(5) = 8.3e-93
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 275 HEDRCVQVVQAA--VHIGMAIEQEIRIHSFLEKTKNYKRKKIIAD 317
H+ + + +Q +++ E E RI + EK KN K+KKI D
Sbjct: 435 HDLKKITEIQGLCKIYLNWISELEKRIILYKEKNKNKKKKKIFPD 479
Score = 46 (21.3 bits), Expect = 1.1e-94, Sum P(5) = 1.1e-94
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPA 386
W +A +G L+ +LIE A + +N A
Sbjct: 679 WNSVKKATIGGLLLNMLIENAKMDVDINVA 708
Score = 39 (18.8 bits), Expect = 2.0e-90, Sum P(4) = 2.0e-90
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 25 RKALNIFNTKRDDGSSKILHFLH 47
RK + ++ +KRD ++ F+H
Sbjct: 857 RKEIILYRSKRDRNKIELPVFIH 879
Score = 39 (18.8 bits), Expect = 2.0e-90, Sum P(4) = 2.0e-90
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 89 NIENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTN 130
N N + + ++E NF Q+ ++++ RS+ N
Sbjct: 829 NCANRQELQLSDNKKESNFCQKQREKLMRKEIILYRSKRDRN 870
>UNIPROTKB|Q8IIB0 [details] [associations]
symbol:PF11_0264 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005739
"mitochondrion" evidence=ISS] InterPro:IPR002092 InterPro:IPR024075
Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739
GO:GO:0003677 GO:GO:0006351 EMBL:AE014186 GO:GO:0003899 KO:K10908
Gene3D:1.10.287.260 PANTHER:PTHR10102 RefSeq:XP_001347935.1
HSSP:P00573 ProteinModelPortal:Q8IIB0
EnsemblProtists:PF11_0264:mRNA GeneID:810811 KEGG:pfa:PF11_0264
EuPathDB:PlasmoDB:PF3D7_1125300 HOGENOM:HOG000282367
ProtClustDB:CLSZ2432452 Uniprot:Q8IIB0
Length = 1531
Score = 484 (175.4 bits), Expect = 1.1e-94, Sum P(5) = 1.1e-94
Identities = 103/258 (39%), Positives = 148/258 (57%)
Query: 734 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK-GHIT 792
R+SN + +K+ A D + RK+VKQT+MT YGVT +GA+ Q+K +++ G
Sbjct: 1275 RNSNSNVNKNELASYC-FKFDLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKEL 1333
Query: 793 DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQ 852
D + + Y A ++ EIF+ A I W + +KV N P+ W +P+GLP Q
Sbjct: 1334 DKNIINKLSQYIANYIFESISEIFKRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQ 1393
Query: 853 PYCKNERHLIRTSLQVLA-LQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACR-DA 910
PY R L+ T LQ ++ + + + + KQR FPPNFVHSLD SH+MMTA
Sbjct: 1394 PYRLGNRILVNTPLQSISVISYKNSQLHKNKQRLGFPPNFVHSLDASHLMMTAEKMVIQN 1453
Query: 911 GLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLS--FPPLP 968
FA VHDS+W HAC+VD MNQ +R+ F+ LYN P+LEN+ +F+ + P P
Sbjct: 1454 NFSFAAVHDSYWAHACNVDIMNQFIRESFITLYNEPILENIYNNFRIRLGKFATKIPSSP 1513
Query: 969 ERGNFDLEEVLESPYFFN 986
E+G D+ V +S YFF+
Sbjct: 1514 EQGELDISMVKDSLYFFS 1531
Score = 351 (128.6 bits), Expect = 1.1e-94, Sum P(5) = 1.1e-94
Identities = 78/239 (32%), Positives = 132/239 (55%)
Query: 411 KTTKRYGVVECDPLVLEGLDRSA--KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
K YGV+ L +A H+ + Y+PM+ PK+W+ + +GG L L + +R
Sbjct: 884 KNNNWYGVIHMRECCANYLLNNAINSHIPLNYLPMICKPKRWENF-EGGMLLLKNSFIRC 942
Query: 469 HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN 528
+ K L N +K + + +G+ W++NK++L +E ++ G I +
Sbjct: 943 N--IKPLFNLNVCNLNRIKNI---VSEIGNVGWKINKEILHYIEYAYIHGITIGKIPLYK 997
Query: 529 DVLIPEK-PLSEDMTE-VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
+ +P+ L E E ++K+ + ++N+ S+R KL+VA+ KD + Y+
Sbjct: 998 NYTLPKYINLKEQNNEEIKKYLLLKEEINRLNKCLISERPTFLQKLAVAKTFKDNDIIYF 1057
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSENPIN 645
PHN+DFRGR YP+ PHL+H+S D+CR ++ FAE + +G GL WLKIHLAN F ++ ++
Sbjct: 1058 PHNIDFRGRMYPLSPHLHHMSDDICRSLITFAEQKEIGNKGLFWLKIHLANTFGKDKLS 1116
Score = 217 (81.4 bits), Expect = 1.1e-94, Sum P(5) = 1.1e-94
Identities = 42/110 (38%), Positives = 67/110 (60%)
Query: 628 LRWLKIHLANL--FSENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 685
++W+ ++ N+ ++ P + +W AE P+Q LA I+L AL+S + S +PI
Sbjct: 1121 IQWVDQNINNIKKLTQQPFDNIEFWNMAEKPWQALAVAIDLKNALESPNASKYKSSIPIQ 1180
Query: 686 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 735
QDG+CNGLQHYAALG++ AVN++ ++P D+YS + V +K D
Sbjct: 1181 QDGTCNGLQHYAALGKDKYGGKAVNIIPSDEPQDIYSVVLDIVISKIKND 1230
Score = 77 (32.2 bits), Expect = 1.1e-94, Sum P(5) = 1.1e-94
Identities = 16/89 (17%), Positives = 47/89 (52%)
Query: 165 QEYREMKKRKFNLLR-RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGW 223
+E + ++++ N++ RRQ+ E ++++ ++E +E + + + + + + ++L W
Sbjct: 394 EEKEKEEEKESNIINVRRQMLIERSSYKKAIEEAEEFVSNLHDLKKITEIQGLCKIYLNW 453
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYAPHIE 252
L + I ++ + KK+K + I+
Sbjct: 454 ISELEKRIILYKEKNKNKKKKKIFPDFID 482
Score = 59 (25.8 bits), Expect = 8.3e-93, Sum P(5) = 8.3e-93
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 275 HEDRCVQVVQAA--VHIGMAIEQEIRIHSFLEKTKNYKRKKIIAD 317
H+ + + +Q +++ E E RI + EK KN K+KKI D
Sbjct: 435 HDLKKITEIQGLCKIYLNWISELEKRIILYKEKNKNKKKKKIFPD 479
Score = 46 (21.3 bits), Expect = 1.1e-94, Sum P(5) = 1.1e-94
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPA 386
W +A +G L+ +LIE A + +N A
Sbjct: 679 WNSVKKATIGGLLLNMLIENAKMDVDINVA 708
Score = 39 (18.8 bits), Expect = 2.0e-90, Sum P(4) = 2.0e-90
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 25 RKALNIFNTKRDDGSSKILHFLH 47
RK + ++ +KRD ++ F+H
Sbjct: 857 RKEIILYRSKRDRNKIELPVFIH 879
Score = 39 (18.8 bits), Expect = 2.0e-90, Sum P(4) = 2.0e-90
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 89 NIENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTN 130
N N + + ++E NF Q+ ++++ RS+ N
Sbjct: 829 NCANRQELQLSDNKKESNFCQKQREKLMRKEIILYRSKRDRN 870
>WB|WBGene00013680 [details] [associations]
symbol:Y105E8A.23 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0007413 "axonal fasciculation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
GO:GO:0006898 GO:GO:0040010 GO:GO:0003677 GO:GO:0000003
GO:GO:0006351 GO:GO:0007413 GO:GO:0003899 EMBL:AL132876
eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 RefSeq:NP_001122532.1 UniGene:Cel.5359
ProteinModelPortal:A5PEY3 PaxDb:A5PEY3 EnsemblMetazoa:Y105E8A.23b
GeneID:173317 KEGG:cel:CELE_Y105E8A.23 UCSC:Y105E8A.23a CTD:173317
WormBase:Y105E8A.23b HOGENOM:HOG000285932 InParanoid:A5PEY3
OMA:FWTHANS NextBio:879131 ArrayExpress:A5PEY3 Uniprot:A5PEY3
Length = 1156
Score = 671 (241.3 bits), Expect = 1.6e-90, Sum P(4) = 1.6e-90
Identities = 156/384 (40%), Positives = 222/384 (57%)
Query: 640 SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI-SHLPIHQDGSCNGLQHYAA 698
+ +P+NG +WW+++++P+Q LAAC+ + A + S ++ S LPIHQDGSCNGLQHYAA
Sbjct: 786 ARDPLNGQKWWMSSDEPWQTLAACVEIENATRYGSDVALFPSQLPIHQDGSCNGLQHYAA 845
Query: 699 LGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL-LAKILIDQVD 757
LGR+ VNL + P DVYS++A RV + ++D + A L + L V
Sbjct: 846 LGRDNEGGVQVNLTQSDTPNDVYSDVAQRVEQKRQQDEQSNGEDCDVARKLREALPQNVP 905
Query: 758 RKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA-------------AACYA 804
RK++KQTVMT+VYGVT GA QIKR+L+ +D +FA AA +A
Sbjct: 906 RKVIKQTVMTTVYGVTMYGAVLQIKRQLKAMDIPGEDAAIFARYLARKTFASLNDAAIFA 965
Query: 805 ---AKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHL 861
A+ T +L + F ++ ++ W AK + + V W TPLGLPVVQPYCK
Sbjct: 966 RYLARKTFASLNDAFTSSMALKDWFRLIAKGSSDLMKTVEWITPLGLPVVQPYCK----- 1020
Query: 862 IRTSLQVLALQREGNLVEI---RKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVH 918
++R+G L+ KQ AFPPNFVHSLD +HMM+T++ C G+ FA VH
Sbjct: 1021 --------LVERKGKLILAPVPMKQVDAFPPNFVHSLDSTHMMLTSLNCAQRGITFAAVH 1072
Query: 919 DSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPP-LPER------- 970
D FWTHA VD+MN+I R++FV L++ P++E E F+ +Y T LPE+
Sbjct: 1073 DCFWTHANSVDQMNEICRQQFVSLHSQPIVEQCSEWFKKTYLTPKMAKILPEKDFQKYSE 1132
Query: 971 --------GNFDLEEVLESPYFFN 986
G+ D+E+V +S YFF+
Sbjct: 1133 IFTANIEHGDLDIEKVKDSVYFFS 1156
Score = 201 (75.8 bits), Expect = 1.6e-90, Sum P(4) = 1.6e-90
Identities = 39/103 (37%), Positives = 69/103 (66%)
Query: 539 EDMTEVQKWK-WSVRKAK--KINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
ED+ +V+K++ ++ +KA+ K+ E +S C + ++ +A + + ++PHN+DFRGR
Sbjct: 659 EDV-DVEKFRSYAKKKAEAIKMRNESNSLWCWMQYRVVLADHFRGQT-LFFPHNMDFRGR 716
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
YP+ P+L+H+ DV R +L+FA+ + LG+ G WLK+H NL
Sbjct: 717 VYPLSPYLSHMGDDVNRCILKFAKSQKLGEKGFDWLKLHCINL 759
Score = 127 (49.8 bits), Expect = 1.6e-90, Sum P(4) = 1.6e-90
Identities = 31/99 (31%), Positives = 52/99 (52%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSY------VMRTHGSRKQQEALKSVTGNCMKK-VFEAL 493
+PM+VPP+ W GG L+ S +M R +E +T + VF+AL
Sbjct: 538 LPMIVPPRPWIDRGTGGPLYTTSQHEIIRKMMEFRAVRLNEEMRARITSQAQARPVFDAL 597
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIA--GLVDRNDV 530
+ LGST W +N+ +L VL+ ++ GN GL+++ ++
Sbjct: 598 NQLGSTPWVINEPMLDVLKDVFGRSGNSESRGLLEKLEI 636
Score = 53 (23.7 bits), Expect = 9.0e-83, Sum P(4) = 9.0e-83
Identities = 18/82 (21%), Positives = 36/82 (43%)
Query: 476 EALKSVTGNCMKKVFEA----LDTLGSTKW-RVNKQVLSVLESIWVSGGNIAGLVDRNDV 530
E + + GNC + + +D + + + R+ + L+V S+W+ N G N+
Sbjct: 249 ELVAPLQGNCSSEEYRMNPFQVDGIEKSNYKRLFEDHLNVESSMWIHVKNTVGEAAENNN 308
Query: 531 LIPEKPLSEDMTEVQKWKWSVR 552
+ ED+ + +W W R
Sbjct: 309 AVS----GEDL--ISEWDWKRR 324
Score = 53 (23.7 bits), Expect = 1.3e-64, Sum P(2) = 1.3e-64
Identities = 20/72 (27%), Positives = 31/72 (43%)
Query: 121 VIPRSENSTNHQLM-CLEPRRRIFVQDPPWFSSIFLKGLYKR-IKLQEYREMKKRKFNLL 178
V RS NS + L+ LE R D P F F G+ K + ++++R K+K +
Sbjct: 618 VFGRSGNSESRGLLEKLEIPMRHDTFDIPDFGREFGIGIKKEDVDVEKFRSYAKKKAEAI 677
Query: 179 RRRQVKQETEAW 190
+ R W
Sbjct: 678 KMRNESNSLWCW 689
Score = 41 (19.5 bits), Expect = 1.6e-90, Sum P(4) = 1.6e-90
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 182 QVKQETEAWERMVDEYKELEAKM 204
Q K + ++W+ + D + E++ KM
Sbjct: 172 QRKFDAKSWKTIEDLFDEMQRKM 194
>CGD|CAL0002343 [details] [associations]
symbol:orf19.6499 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002092 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 CGD:CAL0002343 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000020 EMBL:AACQ01000016 GO:GO:0003899
eggNOG:COG5108 KO:K10908 PANTHER:PTHR10102 RefSeq:XP_720824.1
RefSeq:XP_721337.1 RefSeq:XP_888836.1 ProteinModelPortal:Q5AH39
GeneID:3636994 GeneID:3637444 GeneID:3703847 KEGG:cal:CaO19.13852
KEGG:cal:CaO19.6499 KEGG:cal:CaO19_6499 Uniprot:Q5AH39
Length = 1218
Score = 304 (112.1 bits), Expect = 1.6e-63, Sum P(6) = 1.6e-63
Identities = 74/207 (35%), Positives = 108/207 (52%)
Query: 640 SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS----HLPIHQDGSCNGLQH 695
+ NP+ G +WW+ A+ PF LA C + + L I LPIHQDGSCNGLQH
Sbjct: 730 ARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRLPIHQDGSCNGLQH 789
Query: 696 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 755
YA L + AAVNL+ E DVY+++ V + +++D ++ AK +
Sbjct: 790 YAGLAADETGGAAVNLIRSETKQDVYTKVLEIVKKKIEQDISEQNLGTVNLETAKFFLPI 849
Query: 756 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE--KGHITD-DRQLFA------------- 799
++RKLVK+ VMT+VYGVT GA QI + ++E + H T+ + F+
Sbjct: 850 LNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNETLHKLKSVQLT 909
Query: 800 AACYAAKVTLTALGEIFEAARSIMGWL 826
Y AK L ++ E+F A+ I WL
Sbjct: 910 QTSYLAKKILDSIDELFVHAKQIEKWL 936
Score = 240 (89.5 bits), Expect = 1.6e-63, Sum P(6) = 1.6e-63
Identities = 45/119 (37%), Positives = 71/119 (59%)
Query: 839 PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNL--VEIRKQRTAFPPNFVHSLD 896
P+ W +P GLPV+Q Y K ++ L ++ RK PNF+HSLD
Sbjct: 975 PMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLD 1034
Query: 897 GSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESF 955
+H+ MT + AGL F+ +HDS+WTH +V+++++ILR++FVELY+M L+ + + F
Sbjct: 1035 AAHLFMTCDSANKAGLTFSAIHDSYWTHPNNVEKLSKILREQFVELYSMDYLKYVRQDF 1093
Score = 139 (54.0 bits), Expect = 1.6e-63, Sum P(6) = 1.6e-63
Identities = 33/89 (37%), Positives = 45/89 (50%)
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEG--FYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
+K E S R E+ +A E G Y+ ++LDFRGR YP P L H D+ R
Sbjct: 626 QKTKTELKSLRITFEIMNKLANAF-GENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLAR 683
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSE 641
+ F PLG +G W+K LA+LF +
Sbjct: 684 SLFMFWYSEPLGPNGFYWIKYQLASLFGQ 712
Score = 125 (49.1 bits), Expect = 1.6e-63, Sum P(6) = 1.6e-63
Identities = 43/144 (29%), Positives = 63/144 (43%)
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
K Y +V+ P + L + Y+PML PPK W GGYL + + + T+ S
Sbjct: 505 KTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSI- 563
Query: 474 QQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
Q E L V G + + LD +G+T W +N +L V + GN G +
Sbjct: 564 QVELLNRAGVRGQ-LDNAYSCLDQMGNTAWAINPLMLDVFNKLM---GNPDGFLS----- 614
Query: 532 IPEKPLSEDMTEVQKWKWSVRKAK 555
IP P D T QK K ++ +
Sbjct: 615 IP--PSVPDETLPQKTKTELKSLR 636
Score = 74 (31.1 bits), Expect = 1.6e-63, Sum P(6) = 1.6e-63
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 946 PMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 986
P + ++E F P +S +P +GN D+ +VL+SPYFF+
Sbjct: 1182 PKCKGMMEIF---VP-VSIINVPPKGNLDISKVLDSPYFFS 1218
Score = 57 (25.1 bits), Expect = 9.9e-14, Sum P(4) = 9.9e-14
Identities = 22/110 (20%), Positives = 48/110 (43%)
Query: 861 LIRTSLQVLALQREGNLVEIRK---QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGV 917
L S Q++ +E +VE + +T F +H L + T+ + +
Sbjct: 868 LAGASSQIMQTIKE--IVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKI---LDSI 922
Query: 918 HDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPL 967
D + HA +++ K+ + YN+ +++LL + +S+ T+ P+
Sbjct: 923 -DELFVHAKQIEKWLLQNTKRILTSYNIKTIDHLLNNNPSSFETIFTTPM 971
Score = 46 (21.3 bits), Expect = 1.6e-63, Sum P(6) = 1.6e-63
Identities = 16/52 (30%), Positives = 21/52 (40%)
Query: 90 IEN-SVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRR 140
IEN V EQ QN ++EN E +I N + C E +R
Sbjct: 448 IENCKVPITSKQMEQLQN-SLKLENKEIADQFLISSGGNDDEYLAFCKETKR 498
Score = 44 (20.5 bits), Expect = 5.3e-18, Sum P(4) = 5.3e-18
Identities = 21/100 (21%), Positives = 40/100 (40%)
Query: 263 VMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRI-HSFLEKTKN-------YKRKKI 314
VM + G+ +AG + +Q ++ V + + L K K+ Y KKI
Sbjct: 859 VMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKI 918
Query: 315 IADTEEVLSKEKEL---LRKRVNSLIKSKRVMEAQKLLKN 351
+ +E+ K++ L + ++ S + LL N
Sbjct: 919 LDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDHLLNN 958
Score = 40 (19.1 bits), Expect = 6.7e-63, Sum P(6) = 6.7e-63
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYV 379
LK E + D KL +LV+L+IE V
Sbjct: 423 LKGEVFQYINDDAYIKLTHQLVKLIIENCKV 453
>UNIPROTKB|Q5AH39 [details] [associations]
symbol:CaO19.13852 "DNA-directed RNA polymerase"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002092 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 CGD:CAL0002343 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000020 EMBL:AACQ01000016 GO:GO:0003899
eggNOG:COG5108 KO:K10908 PANTHER:PTHR10102 RefSeq:XP_720824.1
RefSeq:XP_721337.1 RefSeq:XP_888836.1 ProteinModelPortal:Q5AH39
GeneID:3636994 GeneID:3637444 GeneID:3703847 KEGG:cal:CaO19.13852
KEGG:cal:CaO19.6499 KEGG:cal:CaO19_6499 Uniprot:Q5AH39
Length = 1218
Score = 304 (112.1 bits), Expect = 1.6e-63, Sum P(6) = 1.6e-63
Identities = 74/207 (35%), Positives = 108/207 (52%)
Query: 640 SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS----HLPIHQDGSCNGLQH 695
+ NP+ G +WW+ A+ PF LA C + + L I LPIHQDGSCNGLQH
Sbjct: 730 ARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRLPIHQDGSCNGLQH 789
Query: 696 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 755
YA L + AAVNL+ E DVY+++ V + +++D ++ AK +
Sbjct: 790 YAGLAADETGGAAVNLIRSETKQDVYTKVLEIVKKKIEQDISEQNLGTVNLETAKFFLPI 849
Query: 756 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE--KGHITD-DRQLFA------------- 799
++RKLVK+ VMT+VYGVT GA QI + ++E + H T+ + F+
Sbjct: 850 LNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNETLHKLKSVQLT 909
Query: 800 AACYAAKVTLTALGEIFEAARSIMGWL 826
Y AK L ++ E+F A+ I WL
Sbjct: 910 QTSYLAKKILDSIDELFVHAKQIEKWL 936
Score = 240 (89.5 bits), Expect = 1.6e-63, Sum P(6) = 1.6e-63
Identities = 45/119 (37%), Positives = 71/119 (59%)
Query: 839 PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNL--VEIRKQRTAFPPNFVHSLD 896
P+ W +P GLPV+Q Y K ++ L ++ RK PNF+HSLD
Sbjct: 975 PMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLD 1034
Query: 897 GSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESF 955
+H+ MT + AGL F+ +HDS+WTH +V+++++ILR++FVELY+M L+ + + F
Sbjct: 1035 AAHLFMTCDSANKAGLTFSAIHDSYWTHPNNVEKLSKILREQFVELYSMDYLKYVRQDF 1093
Score = 139 (54.0 bits), Expect = 1.6e-63, Sum P(6) = 1.6e-63
Identities = 33/89 (37%), Positives = 45/89 (50%)
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEG--FYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
+K E S R E+ +A E G Y+ ++LDFRGR YP P L H D+ R
Sbjct: 626 QKTKTELKSLRITFEIMNKLANAF-GENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLAR 683
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSE 641
+ F PLG +G W+K LA+LF +
Sbjct: 684 SLFMFWYSEPLGPNGFYWIKYQLASLFGQ 712
Score = 125 (49.1 bits), Expect = 1.6e-63, Sum P(6) = 1.6e-63
Identities = 43/144 (29%), Positives = 63/144 (43%)
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
K Y +V+ P + L + Y+PML PPK W GGYL + + + T+ S
Sbjct: 505 KTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSI- 563
Query: 474 QQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
Q E L V G + + LD +G+T W +N +L V + GN G +
Sbjct: 564 QVELLNRAGVRGQ-LDNAYSCLDQMGNTAWAINPLMLDVFNKLM---GNPDGFLS----- 614
Query: 532 IPEKPLSEDMTEVQKWKWSVRKAK 555
IP P D T QK K ++ +
Sbjct: 615 IP--PSVPDETLPQKTKTELKSLR 636
Score = 74 (31.1 bits), Expect = 1.6e-63, Sum P(6) = 1.6e-63
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 946 PMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 986
P + ++E F P +S +P +GN D+ +VL+SPYFF+
Sbjct: 1182 PKCKGMMEIF---VP-VSIINVPPKGNLDISKVLDSPYFFS 1218
Score = 57 (25.1 bits), Expect = 9.9e-14, Sum P(4) = 9.9e-14
Identities = 22/110 (20%), Positives = 48/110 (43%)
Query: 861 LIRTSLQVLALQREGNLVEIRK---QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGV 917
L S Q++ +E +VE + +T F +H L + T+ + +
Sbjct: 868 LAGASSQIMQTIKE--IVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKI---LDSI 922
Query: 918 HDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPL 967
D + HA +++ K+ + YN+ +++LL + +S+ T+ P+
Sbjct: 923 -DELFVHAKQIEKWLLQNTKRILTSYNIKTIDHLLNNNPSSFETIFTTPM 971
Score = 46 (21.3 bits), Expect = 1.6e-63, Sum P(6) = 1.6e-63
Identities = 16/52 (30%), Positives = 21/52 (40%)
Query: 90 IEN-SVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRR 140
IEN V EQ QN ++EN E +I N + C E +R
Sbjct: 448 IENCKVPITSKQMEQLQN-SLKLENKEIADQFLISSGGNDDEYLAFCKETKR 498
Score = 44 (20.5 bits), Expect = 5.3e-18, Sum P(4) = 5.3e-18
Identities = 21/100 (21%), Positives = 40/100 (40%)
Query: 263 VMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRI-HSFLEKTKN-------YKRKKI 314
VM + G+ +AG + +Q ++ V + + L K K+ Y KKI
Sbjct: 859 VMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKI 918
Query: 315 IADTEEVLSKEKEL---LRKRVNSLIKSKRVMEAQKLLKN 351
+ +E+ K++ L + ++ S + LL N
Sbjct: 919 LDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDHLLNN 958
Score = 40 (19.1 bits), Expect = 6.7e-63, Sum P(6) = 6.7e-63
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYV 379
LK E + D KL +LV+L+IE V
Sbjct: 423 LKGEVFQYINDDAYIKLTHQLVKLIIENCKV 453
>UNIPROTKB|K7ESD1 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase, mitochondrial"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002092 Pfam:PF00940 EMBL:AC004449 HGNC:HGNC:9200
PANTHER:PTHR10102 Ensembl:ENST00000590336 Uniprot:K7ESD1
Length = 143
Score = 245 (91.3 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 54/124 (43%), Positives = 74/124 (59%)
Query: 881 RKQRTAFPPNFVHSLDGSHMMMTAV-------ACRDAGLHFAGVHDSFWTHACDVDEMNQ 933
RKQ+ FPPNF+HSLD SHMM+TA+ C GL F VHD +WTHA DV MNQ
Sbjct: 20 RKQKNGFPPNFIHSLDSSHMMLTALHCYRSPPLCHRKGLTFVSVHDCYWTHAADVSVMNQ 79
Query: 934 ILRKKFVELYNMPMLENL----LESF--------QTSYPTLSFPPLPERGNFDLEEVLES 981
+ R++FV L++ P+L++L ++ F + S + +P+ G FDLE+V S
Sbjct: 80 VCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQAVPKPGAFDLEQVKRS 139
Query: 982 PYFF 985
YFF
Sbjct: 140 TYFF 143
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 986 955 0.00095 122 3 11 22 0.38 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 630 (67 KB)
Total size of DFA: 477 KB (2223 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 92.17u 0.11s 92.28t Elapsed: 00:00:04
Total cpu time: 92.18u 0.11s 92.29t Elapsed: 00:00:04
Start: Fri May 10 01:20:50 2013 End: Fri May 10 01:20:54 2013