BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001982
(986 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis
thaliana GN=RPOT3 PE=2 SV=1
Length = 993
Score = 1380 bits (3571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 665/928 (71%), Positives = 770/928 (82%), Gaps = 39/928 (4%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 74 ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130
Query: 150 FSSIFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 131 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR--TKKQKAAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q+ +KK +AAYAPHIELLPADK+AVIVM
Sbjct: 191 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T RK D++E L K
Sbjct: 251 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 305
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
EK+LLRKRVNSLI+ KR+++A K++K+E TKPWGR TQAKLGSRL+ELLIE AYVQ P+
Sbjct: 306 EKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
+ S P+ RPAFRHRFKT+ K+PG K +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+ALK ++ +VFEALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ +L V+E +W GGNIAGLV+R DV IPEKP SED E+Q WKWS RKA KIN+ERHS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 625 KSGLRWLKIHLANLFS--------------------------ENPINGSRWWLTAEDPFQ 658
KSGL WLKIHLANL++ ENPI+G RWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 659 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 718
CLAAC+ L++ALKS SP+SVISHLPIHQDGSCNGLQHYAALGR++ EAAAVNLVAGEKPA
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 725
Query: 719 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 778
DVYSEI+ RVHEIMK+DS+KDP +P A LAKILI QVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 726 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 785
Query: 779 EQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQ 838
EQIKRRLEEKG ITD+R LFAAACY+AKVTL ALGEIFEAAR+IM WLGDCAK+IAS+N
Sbjct: 786 EQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNH 845
Query: 839 PVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGS 898
PVRW TPLGLPVVQPYC++ERHLIRTSLQVLALQREGN V++RKQRTAFPPNFVHSLDG+
Sbjct: 846 PVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGT 905
Query: 899 HMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTS 958
HMMMTAVACR+AGL+FAGVHDS+WTHACDVD MN+ILR+KFVELYN P+LE+LL+SFQ S
Sbjct: 906 HMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQES 965
Query: 959 YPTLSFPPLPERGNFDLEEVLESPYFFN 986
YP L FPP+P+RG+FDL+EVL+S YFFN
Sbjct: 966 YPNLVFPPVPKRGDFDLKEVLKSQYFFN 993
>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana
sylvestris GN=RPOT3 PE=2 SV=1
Length = 977
Score = 1334 bits (3452), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 640/930 (68%), Positives = 761/930 (81%), Gaps = 46/930 (4%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I N++ C + + N + A+ V+ + N +R+F+QDPPW
Sbjct: 61 INNNIQSQTTVCVSTDENLEELVNLQKIANGVLTKESN------------KRVFIQDPPW 108
Query: 150 FSSIFLKGLYKRIK------LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAK 203
SS+F+ L+ R K + ++R++ +LRRRQ+K ETEAWE+MV+EY+ELE +
Sbjct: 109 VSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELERE 168
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIV 263
M EK+LAPNLP++K L LGWF PL +AIE+EQ + T K +AA+APHI+ LPADK+AVIV
Sbjct: 169 MCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIV 228
Query: 264 MHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVL 322
MHK+MGL+M G E+RCVQVVQAAV IGMA+E E+RIH+FLEKTK ++ A ++E +
Sbjct: 229 MHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDM 288
Query: 323 SKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHP 382
S+E +LRKRV SLIK RV+E +KL+K+EE + WGRDTQAKLG RL+ELL ETAYVQ P
Sbjct: 289 SRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPP 348
Query: 383 VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVP 442
V+ + +PPD+RPAFRH F+ + PG+ K+YGV+ECDPLV+ G+DR+ K M+IPYVP
Sbjct: 349 VDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVP 408
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
MLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A++SV M++V+EALDTLGSTKWR
Sbjct: 409 MLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWR 468
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERH 562
VNK++LSV+ESIW GGNIAGLVDR DV IPE S+D+ EV+KWKW VRK+KKINQE H
Sbjct: 469 VNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDIMEVKKWKWRVRKSKKINQELH 527
Query: 563 SQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRP 622
SQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFAEGRP
Sbjct: 528 SQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRP 587
Query: 623 LGKSGLRWLKIHLANLFS--------------------------ENPINGSRWWLTAEDP 656
LGKSGLRWLKIHLA+L++ NP+NG+RWWL AEDP
Sbjct: 588 LGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDP 647
Query: 657 FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 716
FQCLAACINLSEALKSSSPH+V SHLPIHQDGSCNGLQHYAALGR+++EAAAVNLVAG+K
Sbjct: 648 FQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDK 707
Query: 717 PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVG 776
PADVY+EIA+RV I++ DS KDP+ P ALLAK+LIDQVDRKLVKQTVMTSVYGVT+VG
Sbjct: 708 PADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVG 767
Query: 777 AREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 836
AREQIKRRLEEKG I DDR LF A+CYAAKVTL ALGE+F+AAR M WLGDCAKVIASE
Sbjct: 768 AREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASE 827
Query: 837 NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLD 896
NQPVRWTTPLGLPVVQPY K +RH+IRTSLQVLALQREG+ VE+RKQRTAFPPNFVHSLD
Sbjct: 828 NQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLD 887
Query: 897 GSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQ 956
GSHMMMTAVACRDAGL FAGVHDSFWTHACDVD+MN+ILR+KFVELY+MP+LE+LLESFQ
Sbjct: 888 GSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQ 947
Query: 957 TSYPTLSFPPLPERGNFDLEEVLESPYFFN 986
SYP L+FPPLP+RG+FDL EVLESPYFFN
Sbjct: 948 NSYPALTFPPLPKRGDFDLVEVLESPYFFN 977
>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum
GN=RPOT3-SYL PE=3 SV=1
Length = 977
Score = 1334 bits (3452), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 640/930 (68%), Positives = 761/930 (81%), Gaps = 46/930 (4%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I N++ C + + N + A+ V+ + N +R+F+QDPPW
Sbjct: 61 INNNIQSQTTVCVSTDENLEELVNLQKIANGVLTKESN------------KRVFIQDPPW 108
Query: 150 FSSIFLKGLYKRIK------LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAK 203
SS+F+ L+ R K + ++R++ +LRRRQ+K ETEAWE+MV+EY+ELE +
Sbjct: 109 VSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELERE 168
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIV 263
M EK+LAPNLP++K L LGWF PL +AIE+EQ + T K +AA+APHI+ LPADK+AVIV
Sbjct: 169 MCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIV 228
Query: 264 MHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVL 322
MHK+MGL+M G E+RCVQVVQAAV IGMA+E E+RIH+FLEKTK ++ A ++E +
Sbjct: 229 MHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDM 288
Query: 323 SKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHP 382
S+E +LRKRV SLIK RV+E +KL+K+EE + WGRDTQAKLG RL+ELL ETAYVQ P
Sbjct: 289 SRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPP 348
Query: 383 VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVP 442
V+ + +PPD+RPAFRH F+ + PG+ K+YGV+ECDPLV+ G+DR+ K M+IPYVP
Sbjct: 349 VDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVP 408
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
MLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A++SV M++V+EALDTLGSTKWR
Sbjct: 409 MLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWR 468
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERH 562
VNK++LSV+ESIW GGNIAGLVDR DV IPE S+D+ EV+KWKW VRK+KKINQE H
Sbjct: 469 VNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDIMEVKKWKWRVRKSKKINQELH 527
Query: 563 SQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRP 622
SQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFAEGRP
Sbjct: 528 SQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRP 587
Query: 623 LGKSGLRWLKIHLANLFS--------------------------ENPINGSRWWLTAEDP 656
LGKSGLRWLKIHLA+L++ NP+NG+RWWL AEDP
Sbjct: 588 LGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDP 647
Query: 657 FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 716
FQCLAACINLSEALKSSSPH+V SHLPIHQDGSCNGLQHYAALGR+++EAAAVNLVAG+K
Sbjct: 648 FQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDK 707
Query: 717 PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVG 776
PADVY+EIA+RV I++ DS KDP+ P ALLAK+LIDQVDRKLVKQTVMTSVYGVT+VG
Sbjct: 708 PADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVG 767
Query: 777 AREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE 836
AREQIKRRLEEKG I DDR LF A+CYAAKVTL ALGE+F+AAR M WLGDCAKVIASE
Sbjct: 768 AREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASE 827
Query: 837 NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLD 896
NQPVRWTTPLGLPVVQPY K +RH+IRTSLQVLALQREG+ VE+RKQRTAFPPNFVHSLD
Sbjct: 828 NQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLD 887
Query: 897 GSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQ 956
GSHMMMTAVACRDAGL FAGVHDSFWTHACDVD+MN+ILR+KFVELY+MP+LE+LLESFQ
Sbjct: 888 GSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQ 947
Query: 957 TSYPTLSFPPLPERGNFDLEEVLESPYFFN 986
SYP L+FPPLP+RG+FDL EVLESPYFFN
Sbjct: 948 NSYPALTFPPLPKRGDFDLVEVLESPYFFN 977
>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum
GN=RPOT3-TOM PE=2 SV=2
Length = 977
Score = 1305 bits (3376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 631/883 (71%), Positives = 746/883 (84%), Gaps = 33/883 (3%)
Query: 137 EPRRRIFVQDPPWFSSIFLKGLYKRIK------LQEYREMKKRKFNLLRRRQVKQETEAW 190
E +R+F+QDPPW SS+F+ L+ R K + ++R++ +LRRRQ+K ETEAW
Sbjct: 95 ESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAW 154
Query: 191 ERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPH 250
E+MV+EY+ELE +M EK+LAPNLP++K L LGWF PL +AIE+EQ + T K +AA+APH
Sbjct: 155 EQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPH 214
Query: 251 IELLPADKVAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNY 309
I+ LPADK+AVIVMHK+MGL+M G E+RCVQVVQAAV IGMA+E E+RIH+FLEKTK
Sbjct: 215 IDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKL 274
Query: 310 KRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRL 369
++ A ++E +SKE +LRKRV SLIK RV+E +KL+K+EE + WGRDTQAKLG RL
Sbjct: 275 QKHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRL 334
Query: 370 VELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL 429
+ELL ETAYVQ PV+ + +PPD+RPAFRH FK + PG+ K+YGV+ECDPLV+ G+
Sbjct: 335 LELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGV 394
Query: 430 DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKV 489
DR+ K M+IPYVPMLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A++ V M++V
Sbjct: 395 DRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQV 454
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKW 549
+EALDTLGSTKWRVNK++L+V+ESIW GGNIAGLVDR DV IPE S+D+ EV+KWKW
Sbjct: 455 YEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKW 514
Query: 550 SVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
VRK+KKINQE HSQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD
Sbjct: 515 KVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 574
Query: 610 VCRGVLEFAEGRPLGKSGLRWLKIHLANLFS--------------------------ENP 643
+CRG+LEFAEGRPLGKSGLRWLKIHLA+L++ NP
Sbjct: 575 LCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNP 634
Query: 644 INGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNT 703
+NG+RWWL AEDPFQCLAACINLSEALKSSSPH+VISHLPIHQDGSCNGLQHYAALGR++
Sbjct: 635 LNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDS 694
Query: 704 LEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 763
+EAAAVNLVAGEKPADVY+EIA+RV I++ DS KDP+ P ALLAK+LIDQVDRKLVKQ
Sbjct: 695 MEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQ 754
Query: 764 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIM 823
TVMTSVYGVT+VGAREQIKRRLEEKG I DDR LF A+CYAAKVTL ALGE+F+AAR M
Sbjct: 755 TVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTM 814
Query: 824 GWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQ 883
WLGDCAKVIA ENQPVRWTTPLGLPVVQPY K +RH+IRTSLQ+LALQREG+ VE+RKQ
Sbjct: 815 TWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQ 874
Query: 884 RTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELY 943
RTAFPPNFVHSLDGSHMMMTAVACRDAGL FAGVHDSFWTHACDVD+MN+ILR+KFVELY
Sbjct: 875 RTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELY 934
Query: 944 NMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 986
++P+LE+LLE+FQ SYP L+FPPLP+RG+F+L EVLESPYFFN
Sbjct: 935 SLPILEDLLENFQKSYPALTFPPLPKRGDFNLREVLESPYFFN 977
>sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial
OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2
Length = 1021
Score = 1177 bits (3046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/846 (65%), Positives = 682/846 (80%), Gaps = 31/846 (3%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M RK+ L+RRQVK ETEAWE+ EYKEL M E++LAPNLP++K LFLGWF PL +
Sbjct: 178 MGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRD 237
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ K KAAYA ++ LPAD +AVI MHK+MGL+M G + +VVQAA+ I
Sbjct: 238 KIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVI 297
Query: 290 GMAIEQEIRIHSFLEKTKNYK--RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK 347
G AIEQE+RIH+FLEKTK K + K D E V ++E+E LRK+V +L+K +++ +
Sbjct: 298 GDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHV-TQEQEKLRKKVTNLMKKQKLRAVGQ 356
Query: 348 LLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILK 406
+++ +++KPWG+D +AK+GSRL+ELL++TAY+Q P N PPD+RPAF H +T+ K
Sbjct: 357 IVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAK 416
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ ++RYG+++CD LV +GL+R+A+HM+IPY+PMLVPP KW GY+KGG+L+LPSYVM
Sbjct: 417 ET-KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVM 475
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
RTHG+R+Q+EA+K + N ++ VFEALDTLGSTKWR+NK+VLSV++ IW GG +A LVD
Sbjct: 476 RTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVD 535
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
R+D +PE+P +ED KW+W V+ KK N+ERHSQRCD ELKL+VAR+MKDEEGF+Y
Sbjct: 536 RDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFY 595
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS------ 640
PHN+DFRGRAYPMHPHLNHL SD+CRGVL FAEGRPLG+SGLRWLKIHLANLF+
Sbjct: 596 PHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKL 655
Query: 641 --------------------ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 680
+ P+ G RWWL AEDPFQCLA CINLSEA++SSSP + IS
Sbjct: 656 SLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSIS 715
Query: 681 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 740
H+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IMKRD+ +DP
Sbjct: 716 HIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDP 775
Query: 741 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 800
++ P A+ A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LF A
Sbjct: 776 AEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGA 835
Query: 801 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERH 860
ACYAAKVTLTALGE+FEAARSIM WLG+CAK+IASEN+PVRWTTPLGLPVVQPY K RH
Sbjct: 836 ACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRH 895
Query: 861 LIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDS 920
LI+TSLQ+L LQ+E V +++QRTAFPPNF+HSLDGSHMMMTAVACR AGL+FAGVHDS
Sbjct: 896 LIKTSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDS 955
Query: 921 FWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLE 980
+WTHACDVD++N+ILR+KFVELY P+LE LLESFQTSYPTL FPPLPERG+FDL +VLE
Sbjct: 956 YWTHACDVDKLNRILREKFVELYETPILEKLLESFQTSYPTLLFPPLPERGDFDLRDVLE 1015
Query: 981 SPYFFN 986
SPYFFN
Sbjct: 1016 SPYFFN 1021
>sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2
Length = 1020
Score = 1176 bits (3041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/846 (64%), Positives = 682/846 (80%), Gaps = 31/846 (3%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M RK+ L+RRQVK ETEAWE+ EYKEL M E++LAPNLP++K LFLGWF PL +
Sbjct: 177 MGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRD 236
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ K KAAYA + LPAD +AVI MHK+MGL+M G + +VVQAA+ I
Sbjct: 237 KIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVI 296
Query: 290 GMAIEQEIRIHSFLEKTKNYK--RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK 347
G AIEQE+RIH+FLEKTK K + K D E V ++E+E LRK+V +L+K +++ +
Sbjct: 297 GDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHV-TQEQEKLRKKVTNLMKKQKLRAVGQ 355
Query: 348 LLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILK 406
+++ +++KPWG+D +AK+GSRL++LL++TAY+Q P N PPD+RPAF H +T+ K
Sbjct: 356 IVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAK 415
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ ++RYG+++CD LV +GL+R+A+HM+IPY+PMLVPP KW GY+KGG+L+LPSYVM
Sbjct: 416 ET-KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVM 474
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
RTHG+R+Q+EA+K + N ++ VFEALDTLG+TKWR+NK+VLSV++ IW GG +A LVD
Sbjct: 475 RTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVD 534
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
R+D +PE+P +ED KW+W V+ KK N+ERHSQRCD ELKL+VAR+MKDEE F+Y
Sbjct: 535 RDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFY 594
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF------- 639
PHN+DFRGRAYPMHPHLNHL SD+CRGVLEFAEGRPLG+SGLRWLKIHLANLF
Sbjct: 595 PHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKL 654
Query: 640 -------------------SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 680
S+ P+ G RWWL AEDPFQCLA CINLSEA++SSSP + +S
Sbjct: 655 SLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVS 714
Query: 681 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 740
H+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IMKRD+ +DP
Sbjct: 715 HIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDP 774
Query: 741 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 800
++ P A+ A++L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LF A
Sbjct: 775 AEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGA 834
Query: 801 ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERH 860
ACYAAKVTLTALGE+FEAARSIM WLG+CAK+IASEN+PVRWTTPLGLPVVQPY K RH
Sbjct: 835 ACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRH 894
Query: 861 LIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDS 920
LI+TSLQ+L LQRE V +++QRTAFPPNF+HSLDGSHMMMTAVACR AGL+FAGVHDS
Sbjct: 895 LIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDS 954
Query: 921 FWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVLE 980
+WTHACDVD++N+ILR+KFVELY P+LE LLESFQTSYPTL FPPLPERG+FD+ +VLE
Sbjct: 955 YWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGDFDMRDVLE 1014
Query: 981 SPYFFN 986
SPYFFN
Sbjct: 1015 SPYFFN 1020
>sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum
GN=RPOT1-TOM PE=2 SV=2
Length = 1002
Score = 1129 bits (2919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/847 (64%), Positives = 672/847 (79%), Gaps = 35/847 (4%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M K+N LRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +
Sbjct: 161 MGVGKYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 220
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
AI EQK+ K + AYAP + LPA+ +AVI MHK+MGL+M G +VVQAA +I
Sbjct: 221 AIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYI 280
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQ 346
G AIE E RIH FLEKTK K + D EE + KE+E LRK+V L+K +++ + +
Sbjct: 281 GEAIEHEARIHRFLEKTK--KSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVR 338
Query: 347 KLLKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTIL 405
K++K ++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 339 KIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV- 397
Query: 406 KHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYV 465
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KGGYLFLPSY+
Sbjct: 398 --ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYI 455
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
MRTHG+++Q+EA+K V ++ VF+ALDTLG+TKWRVN++VL +++ IW SGG +A LV
Sbjct: 456 MRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLV 515
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
DR DV +PE P +ED E++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFY
Sbjct: 516 DREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFY 575
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL------- 638
YPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLG SGLRWLKIHLAN+
Sbjct: 576 YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDK 635
Query: 639 --------FSEN-----------PINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 679
FSEN P+ G RWWL AEDPFQCLA CIN++EAL+S SP + I
Sbjct: 636 LSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAI 695
Query: 680 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 739
S++PIHQDGSCNGLQHYAALGR+ L AAAVNLVAG+KPADVYS IA RV +IMKRD+ KD
Sbjct: 696 SYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKD 755
Query: 740 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 799
P+ P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIK+RL+E+G I DD +LFA
Sbjct: 756 PANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFA 815
Query: 800 AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER 859
AACYAAK TLTALGE+FEAARSIM WLGDCAK+IA EN PVRWTTPLGLPVVQPY K R
Sbjct: 816 AACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGR 875
Query: 860 HLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHD 919
HLI+TSLQ+L LQRE + V +++QRTAFPPNFVHSLDGSHMMMTA+AC+++GL FAGVHD
Sbjct: 876 HLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHD 935
Query: 920 SFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVL 979
S+WTHACDVD+MN+ILR+KFVELY+ P+LENLLESFQ S+P L FPPLPERG+FDL EVL
Sbjct: 936 SYWTHACDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVL 995
Query: 980 ESPYFFN 986
ESPYFFN
Sbjct: 996 ESPYFFN 1002
>sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris
GN=RPOT1 PE=2 SV=1
Length = 1002
Score = 1127 bits (2915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/847 (64%), Positives = 674/847 (79%), Gaps = 35/847 (4%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M K+NLLRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +
Sbjct: 161 MGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 220
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
AI EQK+ K + AYAP + LPA+ +AVI MHK+MGL+M G +VVQAA HI
Sbjct: 221 AIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHI 280
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQ 346
G AIE E RIH FLEKTK K + D E+ + KE+E +RK+V L+K +++ + +
Sbjct: 281 GEAIEHEARIHRFLEKTK--KSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVR 338
Query: 347 KLLKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTIL 405
K++K ++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 339 KIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV- 397
Query: 406 KHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYV 465
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KG YLFLPSY+
Sbjct: 398 --ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYI 455
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
MRTHG+++Q+EA+K V ++ VF+ALDTLG+TKWR+N++VL +++ IW SGG +A LV
Sbjct: 456 MRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLV 515
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
DR DV +PE+P +ED +++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFY
Sbjct: 516 DREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFY 575
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL------- 638
YPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLKIHLAN+
Sbjct: 576 YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDK 635
Query: 639 --------FSEN-----------PINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 679
FSEN P+ G RWWL AEDPFQCLA CIN++EAL+S SP + I
Sbjct: 636 LSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAI 695
Query: 680 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 739
S++PIHQDGSCNGLQHYAALGR+TL AAAVNLVAG+KPADVYS IA RV +IMKRD+ KD
Sbjct: 696 SYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKD 755
Query: 740 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 799
P+ P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LFA
Sbjct: 756 PANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFA 815
Query: 800 AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER 859
AACYAAK TLTALGE+FEAARSIM WLGDCAK+IA EN PVRWTTPLGLPVVQPY K R
Sbjct: 816 AACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGR 875
Query: 860 HLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHD 919
HLI+TSLQ+L LQRE + V +++QRTAFPPNFVHSLDGSHMMMTA+AC+++GL FAGVHD
Sbjct: 876 HLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHD 935
Query: 920 SFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDLEEVL 979
S+WTHA DVD+MN+ILR+KFVELY+ P+LENLLESFQ S+P L FPPLPERG+FDL EVL
Sbjct: 936 SYWTHASDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVL 995
Query: 980 ESPYFFN 986
ESPYFFN
Sbjct: 996 ESPYFFN 1002
>sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=RPOT2 PE=1 SV=1
Length = 1011
Score = 1122 bits (2903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/854 (62%), Positives = 670/854 (78%), Gaps = 30/854 (3%)
Query: 161 RIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLF 220
R+K Q+ M + KF L RRQVK ETE WER EY EL M E++LAPNLP++K LF
Sbjct: 160 RMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLF 219
Query: 221 LGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV 280
LGWF PL +AI ++Q++ R K KA YA +++ LPADK++VI MHK+MG +M G ++ CV
Sbjct: 220 LGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNGCV 279
Query: 281 QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE-EVLSKEKELLRKRVNSLIKS 339
+VV AA +G AIEQEIRI +FL+K K + E E KE++ LRK+VN LIK
Sbjct: 280 KVVHAACTVGDAIEQEIRICTFLDKKKKGDDNEESGGVENETSMKEQDKLRKKVNELIKK 339
Query: 340 KRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
+++ +K+L++ + TKPW D +AK+GSRL+ELL+ TAY+Q P + D PDVRPAF
Sbjct: 340 QKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDVRPAFV 399
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
H FK + + ++YGV+ECDPLV +GL++S ++ ++PY+PMLVPP KW GY+KG Y
Sbjct: 400 HTFK--VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAY 457
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
LFL SY+M+THG+++Q+EALKS ++ VFEALDTLGSTKWRVNK+VL+V++ IW SG
Sbjct: 458 LFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSG 517
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
G +A +VDR+DV +PEKP +ED ++KWKW V+ AKK+N ERHSQRCDTELKLSVAR+M
Sbjct: 518 GCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKM 577
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
KDEE FYYPHN+DFRGRAYPM PHLNHL SD+CRGVLEFAEGRP+G SGLRWLKIHLANL
Sbjct: 578 KDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANL 637
Query: 639 ---------------FSEN-----------PINGSRWWLTAEDPFQCLAACINLSEALKS 672
F+EN P+ GSRWWL AEDPFQCLA CI+L+EAL+S
Sbjct: 638 YAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEALRS 697
Query: 673 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 732
SP +V+SH+PIHQDGSCNGLQHYAALGR+TL A AVNLVAGEKPADVYS IA RV +IM
Sbjct: 698 PSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIATRVLDIM 757
Query: 733 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 792
+RD+++DP P+AL A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+
Sbjct: 758 RRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERSDFG 817
Query: 793 DDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQ 852
D++++F AACYAAKVTL A+ E+F+AAR+IM W G+CAK+IASEN+ VRWTTPLGLPVVQ
Sbjct: 818 DEKEVFGAACYAAKVTLAAIDEMFQAARAIMRWFGECAKIIASENETVRWTTPLGLPVVQ 877
Query: 853 PYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL 912
PY + L++TSLQ L+LQ E + V +R+QRTAFPPNF+HSLDGSHMMMTAVAC+ AG+
Sbjct: 878 PYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACKRAGV 937
Query: 913 HFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGN 972
FAGVHDSFWTHACDVD++N ILR+KFVELY+ P+LENLLESF+ S+P L FPPLPERG+
Sbjct: 938 CFAGVHDSFWTHACDVDKLNIILREKFVELYSQPILENLLESFEQSFPHLDFPPLPERGD 997
Query: 973 FDLEEVLESPYFFN 986
DL+ VL+SPYFFN
Sbjct: 998 LDLKVVLDSPYFFN 1011
>sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial OS=Arabidopsis
thaliana GN=RPOT1 PE=2 SV=1
Length = 976
Score = 1097 bits (2836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/851 (60%), Positives = 648/851 (76%), Gaps = 35/851 (4%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M +KF +L++RQVK ETE WER E +E+ A M E++LAPNLP++K LFLGWF P+
Sbjct: 127 MGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRN 186
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVH 288
AI+ + + KK K YAP +E LPADK+AVI MHKMMGL+M E V++V AA
Sbjct: 187 AIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQ 246
Query: 289 IGMAIEQEIRIHSFLEKT--KNYKRKKIIAD----TEEVLSKEKELLRKRVNSLIKSKRV 342
IG A+EQE+RI+SFL+K KN K I + +EE+++KE E RK+V L++ ++
Sbjct: 247 IGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKL 306
Query: 343 MEAQKLL-KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRF 401
+ + L+ K++ KPWG++ Q K+G+RL++LL+E AY+Q P D PPD+RPAF+ F
Sbjct: 307 RQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNF 366
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
+T+ KT++RYG +ECDPLVL+GLD+SA+HM+IPY+PML+PP+ W GY++G + FL
Sbjct: 367 RTVTLE-NTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFL 425
Query: 462 PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
PSYVMRTHG+++Q+ +K ++ V+EALDTLG+TKW++NK+VLS+++ IW +GG I
Sbjct: 426 PSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGGRI 485
Query: 522 AGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
GLVDR DV IPE+P ED + + W+W +KA K N ERHSQRCD ELKL VAR+MKDE
Sbjct: 486 GGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEVARKMKDE 545
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF-- 639
EGFYYPHN+DFRGRAYP+HP+LNHL SD+CRG+LEF EG+PLGKSGLRWLKIH+ANL+
Sbjct: 546 EGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAG 605
Query: 640 ------------------------SENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 675
S+ P+ G RWWL AEDPFQCLAACINLSEAL+S P
Sbjct: 606 GVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRSPFP 665
Query: 676 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 735
+ ISH+PIHQDGSCNGLQHYAALGR+ L A AVNLV GEKPADVY+EIA RV +IM++D
Sbjct: 666 EAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAARVLKIMQQD 725
Query: 736 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 795
+ +DP P A AK+++DQVDRKLVKQTVMTSVYGVT+ GAR+QIK+RL+E+G DD
Sbjct: 726 AEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKERGTFEDDS 785
Query: 796 QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYC 855
F A+CYAAK+TL AL E+FEAAR+I W GDCAK+IASEN V WTTPLGLPVVQPY
Sbjct: 786 LTFHASCYAAKITLKALEEMFEAARAIKSWFGDCAKIIASENNAVCWTTPLGLPVVQPYR 845
Query: 856 KNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFA 915
K RHL++T+LQVL L RE + V R+Q TAF PNF+HSLDGSHMMMTAVAC AGL FA
Sbjct: 846 KPGRHLVKTTLQVLTLSRETDKVMARRQMTAFAPNFIHSLDGSHMMMTAVACNRAGLSFA 905
Query: 916 GVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLSFPPLPERGNFDL 975
GVHDSFWTHACDVD MN ILR+KFVELY P+LENLLESFQ S+P +SFPPLPERG+FDL
Sbjct: 906 GVHDSFWTHACDVDVMNTILREKFVELYEKPILENLLESFQKSFPDISFPPLPERGDFDL 965
Query: 976 EEVLESPYFFN 986
+VLES YFFN
Sbjct: 966 RKVLESTYFFN 976
>sp|Q8L6J2|RPO2A_TOBAC DNA-directed RNA polymerase 2A (Fragment) OS=Nicotiana tabacum
GN=RPOT2-SYL PE=3 SV=1
Length = 332
Score = 567 bits (1462), Expect = e-160, Method: Compositional matrix adjust.
Identities = 258/332 (77%), Positives = 301/332 (90%)
Query: 655 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 714
DPFQCLA CINLSEA++SSSP + +SH+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAG
Sbjct: 1 DPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 60
Query: 715 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 774
EKPADVYS IA RV +IMKRD+ +DP++ P A+ A++L++QVDRKLVKQTVMTSVYGVT+
Sbjct: 61 EKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTY 120
Query: 775 VGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA 834
+GAR+QIKRRL+E+G I DD +LF AACYAAKVTLTALGE+FEAARSIM WLG+CAK+IA
Sbjct: 121 IGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIA 180
Query: 835 SENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHS 894
SEN+PVRWTTPLGLPVVQPY K RHLI+TSLQ+L LQRE V +++QRTAFPPNF+HS
Sbjct: 181 SENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHS 240
Query: 895 LDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLES 954
LDGSHMMMTAVACR AGL+FAGVHDS+WTHACDVD++N+ILR+KFVELY P+LE LLES
Sbjct: 241 LDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLES 300
Query: 955 FQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 986
FQTSYPTL FPPLPERG+FD+ +VLESPYFFN
Sbjct: 301 FQTSYPTLLFPPLPERGDFDMRDVLESPYFFN 332
>sp|P13433|RPOM_YEAST DNA-directed RNA polymerase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO41 PE=1
SV=2
Length = 1351
Score = 492 bits (1266), Expect = e-138, Method: Compositional matrix adjust.
Identities = 309/857 (36%), Positives = 449/857 (52%), Gaps = 119/857 (13%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKGLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G AIE E R +E+VL E + R VN K+ E +KL
Sbjct: 538 VGKAIEMEFR-------------------SEQVLKSESQAFRD-VN-----KKSPEFKKL 572
Query: 349 LKN----------EETKP-WGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDV 393
++N E++K W + +A++GS L+ +LI+ A V PV A
Sbjct: 573 VQNAKSVFRSSQIEQSKILWPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE-- 630
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWK 451
PAF H ++ H G K GV++ ++ L+ R + +PMLV PK W
Sbjct: 631 APAFAHGYQY---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWV 683
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSV 510
+ GGY + S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V
Sbjct: 684 NWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDV 743
Query: 511 LESIWVSGGNIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCD 567
+ +W G + D VL P P + D + ++ WK V+ A K + +R S RCD
Sbjct: 744 VSQVWNKGEGFLDIPGAQDEMVLPPAPPKNSDPSILRAWKLQVKTIANKFSSDR-SNRCD 802
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
T KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SG
Sbjct: 803 TNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSG 861
Query: 628 LRWLKIHLANLF------------------------SENPINGSRWWLTAEDPFQCLAAC 663
L+WLKIHL+NLF +ENP+ G RWW TA+ P+Q LA C
Sbjct: 862 LKWLKIHLSNLFGFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATC 921
Query: 664 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 723
L+E +K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY+
Sbjct: 922 FELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAH 981
Query: 724 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 783
+A V + ++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI +
Sbjct: 982 VARLVQKRLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAK 1035
Query: 784 RLEEKGHITDDR-QLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASE------ 836
+L I DDR + + Y K +A+ E+F +A I WLG+ AK I+
Sbjct: 1036 QLSP---IFDDRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLDVD 1092
Query: 837 -------NQP-----VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQR--EGNLVEIRK 882
N+P V WTTPLGLP+VQPY + + + T+LQ + + N V R+
Sbjct: 1093 EKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNARR 1152
Query: 883 QRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVEL 942
Q+ PPNF+HSLD SHM+++A C GL FA VHDS+WTHA D+D MN +LR++F++L
Sbjct: 1153 QKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASVHDSYWTHASDIDTMNVVLREQFIKL 1212
Query: 943 YNMPMLENLLESFQTSY 959
+ + ++ L E F Y
Sbjct: 1213 HEVDLVLRLKEEFDQRY 1229
>sp|O13993|RPOM_SCHPO DNA-directed RNA polymerase, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpo41 PE=3 SV=2
Length = 1154
Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust.
Identities = 302/864 (34%), Positives = 441/864 (51%), Gaps = 123/864 (14%)
Query: 215 HIKGLFLGWFGPLSEAIEREQKM---------QRTKKQKAAYAPHIELLPADKVAVIVMH 265
++ LF W+ L + + E + K + Y P ++LL + K+A + +
Sbjct: 322 NVSSLFYSWYVQLEQLFKEEISLIDDLALNESLDKKNDRLIYGPFLKLLSSKKLAALTIM 381
Query: 266 KMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL--EKTKNYKRKKIIADTEEVLS 323
++ L DR +V +G + E+E EK K+YK KK
Sbjct: 382 EVAQLSTNPRYDRGARVTTLLGGLGRSFEREFLSEQIQRQEKNKSYKDKK---------- 431
Query: 324 KEKELLR--KRVNSLIKSKRVMEAQ-KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ 380
+ KEL ++ +K+ R+ + ++ N W K+GS + LL+ A ++
Sbjct: 432 RLKELFNDPRKFRQAVKNLRLSNTRDNIVLNPSVDSWPSAIVMKVGSVALCLLLSVAKIE 491
Query: 381 HPVNPADYSPPDVR----PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM 436
V D S + AF H ++ G+K VE L+ +++ H+
Sbjct: 492 --VTAKDLSTGGILKQEVAAFVHTYQY---SNGRKVGMIVPHVEFYKLLSRDIEKP--HL 544
Query: 437 LIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDT 495
+PMLV PK W + GGY + ++R G+ +Q + L + N + ++F+A+ +
Sbjct: 545 HPQLLPMLVTPKPWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQLDELFKAVSS 604
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKA 554
LG WR+N+++ +VL IW SG + R +P P + K W R+
Sbjct: 605 LGKVSWRINQRLFNVLIRIWNSGEKFLSIPPREVKCDMPPYP-KNSINPRDKVIWHTRRK 663
Query: 555 K--KINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
+ + HSQRCD KL +AR +E+ FY+PH+LDFRGRAYP+ HL+H+S+DVCR
Sbjct: 664 ELAALKTGAHSQRCDFNYKLEIARAFLNEK-FYFPHSLDFRGRAYPLSSHLHHVSNDVCR 722
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLF------------------------SENPINGSR 648
G+LEF+ G+PLG GL WLK+HLANLF ++ P++G++
Sbjct: 723 GLLEFSTGKPLGPKGLNWLKVHLANLFGISKKDFATRQAFVDDNMQEVFDSADRPLDGNK 782
Query: 649 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 708
WW A+DPFQ LAAC ++EA++S S ISH+PI QDG+CNGLQHYAALG + A
Sbjct: 783 WWSKADDPFQALAACFEIAEAVRSGDHESYISHIPIQQDGTCNGLQHYAALGGDIEGAKQ 842
Query: 709 VNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 768
VNL + P+DVY +A V +K+D+ +A L D+V R +VK TVMT+
Sbjct: 843 VNLWPSDHPSDVYEAVAEIVRGFLKKDAEAGDE------MANFLKDKVTRSVVKPTVMTN 896
Query: 769 VYGVTFVGAREQIKRRLE-----EKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIM 823
VYGVT+VGAR+QI +LE EK + D A Y K AL +F A I
Sbjct: 897 VYGVTYVGARKQISEKLENIDGMEKLKVAD------YANYLTKKVFEALRSLFTQAHEIQ 950
Query: 824 GWLGDCAKVIA-------------SENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLA 870
WL C +I E PV WTT L LP+VQPY + IRT+LQ +
Sbjct: 951 DWLSACCNLITHSLPADYIKEGIKDELTPVVWTTLLNLPIVQPYRNYKSRQIRTNLQTVF 1010
Query: 871 LQREGNLVEIR--KQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDV 928
++ ++ KQ TAFPPNF+HSLD +HM MT + C + ++FA VHDS+WTHACDV
Sbjct: 1011 IEERDRTATVQPHKQATAFPPNFIHSLDATHMFMTCLKCSEQNINFAAVHDSYWTHACDV 1070
Query: 929 DEMNQILRKKFVELYNMPMLENLLESFQ--------------------------TSYPTL 962
D+MN +LR+ FV L++ ++E L + F+ SY L
Sbjct: 1071 DQMNSLLREAFVLLHSNNIMERLKQEFEERYKGFLVSKKAIKANDEDLKAKFGNKSYIPL 1130
Query: 963 SFPPLPERGNFDLEEVLESPYFFN 986
FPPLP RG DL++VLES YFF+
Sbjct: 1131 EFPPLPARGALDLKKVLESKYFFS 1154
>sp|P38671|RPOM_NEUCR DNA-directed RNA polymerase, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) GN=cyt-5 PE=3 SV=2
Length = 1423
Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust.
Identities = 280/824 (33%), Positives = 425/824 (51%), Gaps = 118/824 (14%)
Query: 231 IEREQKMQRTKKQK-----AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
+E E+ +KK K Y P I +++A + + + + G + +
Sbjct: 420 VEVEKSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMGGAHKGSTIASL 479
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLR-KRVNSLIKSKRVME 344
HI E++IR+ +K + K+ + + + +LR K + S + +
Sbjct: 480 ITHIAKFAEEDIRV----QKAEALISKRNLRKAKSKQHNPRSVLRFKNSTASAGSSDMAD 535
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
+ + + + W + K+G+ L+ L++TA + + PV + +PAF H
Sbjct: 536 SNNVAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHV 593
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYL 459
+ + K+ G + + V+E L R L ++PM+ PP W + KG YL
Sbjct: 594 MQL-------RKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYL 646
Query: 460 FLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ V+R ++Q ++ M +VF+ LD LG T W++N V V+ +W S
Sbjct: 647 ETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLDVWNS 706
Query: 518 GGNIAGLVDRNDV--LIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKL 572
G +A + + + L PE +ED T + W +++ K I ER HSQRC +L
Sbjct: 707 GKQVANIPPLDPIFDLPPEPASTEDPTVKRAW---LKEIKVIENERSGLHSQRCFMNFQL 763
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+AR +D+ FY+PHN+DFRGRAYP+ P+LNH+ +D RG++ FA+G+PLG+SGLRWLK
Sbjct: 764 EIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRWLK 822
Query: 633 IHLANLFS------------------------ENPINGSRWWLTAEDPFQCLAACINLSE 668
+HLAN++ NP+NG++WWL AEDP+QCLA C L+
Sbjct: 823 VHLANVYGFDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATCFELAA 882
Query: 669 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 728
AL+ P +SHLPIHQDG+CNGLQHYAALG +T A VNLV G++PADVYS +A V
Sbjct: 883 ALELEDPTKYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSAVAKLV 942
Query: 729 HEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 788
+ ++ D KD AK + ++ RK+VKQTVMT+VYGVT+VGAR+Q+ +++E
Sbjct: 943 IKGIEDDLAKDNE------FAKAMHGKITRKVVKQTVMTNVYGVTYVGARKQVLKQIEAA 996
Query: 789 -GHITDDRQLFAA--ACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIA----------- 834
+IT + + AA A Y + A+ +F+ A I WLG+ +
Sbjct: 997 YPNITAESGIEAALLASYVTQHIFRAMSTMFKGAHDIQNWLGEIGGRVCRALTPEQLDEF 1056
Query: 835 --SENQP-----------------------------------VRWTTPLGLPVVQPYCKN 857
SE P + WTTPL +PVVQPY K+
Sbjct: 1057 ERSERSPHGDGTASGENITLAGNPRKSSAHKNDEILNNFQSTIIWTTPLRMPVVQPYRKH 1116
Query: 858 ERHLIRTSLQ--VLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFA 915
+ T +Q V+ + + V RKQ AFPPNF+HSLD SHM+++A+ C + GL FA
Sbjct: 1117 GTKTVSTCMQDLVMTIPERSDPVNRRKQLQAFPPNFIHSLDASHMILSALHCDELGLTFA 1176
Query: 916 GVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSY 959
VHDSFWTHA D+D MN +LR F+ +++ ++ L FQ Y
Sbjct: 1177 AVHDSFWTHASDIDSMNAVLRDAFIRIHSEDVIGRLAAEFQARY 1220
Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 962 LSFPPLPERGNFDLEEVLESPYFFN 986
L FPP+PE+G+FD+ + +S YFF+
Sbjct: 1399 LVFPPIPEKGDFDVRSLKDSTYFFS 1423
>sp|O00411|RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial OS=Homo sapiens GN=POLRMT
PE=1 SV=2
Length = 1230
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 269/791 (34%), Positives = 416/791 (52%), Gaps = 82/791 (10%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 469 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 528
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ L + + E +PW Q +LG
Sbjct: 529 HYRKYLCLLASDAEVPEPCLPRQYWEELGAPEALRE----------QPWPLPVQMELGKL 578
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 579 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 629
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 630 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 689
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 690 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 749
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 750 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 808
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL--------------FSE--- 641
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL F+E
Sbjct: 809 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNLTGLKKREPLRKRLAFAEEVM 868
Query: 642 --------NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGL 693
P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNGL
Sbjct: 869 DDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGL 928
Query: 694 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 753
QHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 929 QHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVLE 982
Query: 754 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA--AACYAAKVTLTA 811
+ RK+VKQTVMT VYGVT G R QI++RL E ++D Q F A+ Y + +
Sbjct: 983 GFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDFPQEFVWEASHYLVRQVFKS 1039
Query: 812 LGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNER-HLIRTSLQVLA 870
L E+F R+I WL + A++I+ V W TPLG+PV+QPY + + I +Q +
Sbjct: 1040 LQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSIT 1099
Query: 871 LQREGNLVE---IRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACD 927
G++ RKQ+ FPPNF+HSLD SHMM+TA+ C GL F VHD +WTHA D
Sbjct: 1100 YTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAAD 1159
Query: 928 VDEMNQILRKKFVELYNMPMLENL------------LESFQTSYPTLSFPPLPERGNFDL 975
V MNQ+ R++FV L++ P+L++L + + S + +P+ G FDL
Sbjct: 1160 VSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQAVPKPGAFDL 1219
Query: 976 EEVLESPYFFN 986
E+V S YFF+
Sbjct: 1220 EQVKRSTYFFS 1230
>sp|Q8BKF1|RPOM_MOUSE DNA-directed RNA polymerase, mitochondrial OS=Mus musculus GN=Polrmt
PE=2 SV=1
Length = 1207
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 254/696 (36%), Positives = 379/696 (54%), Gaps = 76/696 (10%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW +LG +L ELL++ VQ P + A R + +
Sbjct: 530 LEAPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVY 581
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P L+ +A+ L VPML PP W + G YL + +
Sbjct: 582 SFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKL 641
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR T G+ + Q L+ + +AL LG+ WRVN +L ++ I+ G +
Sbjct: 642 MRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLG 701
Query: 525 VD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
V R++ P + L T V K + + + K+ +E HS R + +LS+A+ ++
Sbjct: 702 VPPPRSEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR 761
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 762 -HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINLT 820
Query: 640 -------------------------SENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 674
++NP+ G +WW+ A++P+Q LA C+ ++ A++S
Sbjct: 821 GLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPD 880
Query: 675 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 734
P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E ++
Sbjct: 881 PAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQ 940
Query: 735 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 794
D+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E ++D
Sbjct: 941 DAKEG------LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LSDF 991
Query: 795 RQLFA--AACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQ 852
Q F A+ Y + +L E+F + R+I WL + A +I+ PV W TPLG+P++Q
Sbjct: 992 PQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPIIQ 1051
Query: 853 PYCKNERHLIRTSLQVLALQR---EGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRD 909
PY + + ++ LQ + L E KQ+ FPPNF+HSLD SHMM+TA+ C
Sbjct: 1052 PYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYR 1111
Query: 910 AGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLS------ 963
GL F VHD FWTHA D+ MN++ R++FV L++ P+LE+L + + + ++S
Sbjct: 1112 KGLIFVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLK 1171
Query: 964 -------------FPPLPERGNFDLEEVLESPYFFN 986
LP+ G FDL +V+ S YFF+
Sbjct: 1172 SSERALVTKLQETLQSLPKTGTFDLGQVIRSTYFFS 1207
>sp|P07659|RPOL_BPT3 DNA-directed RNA polymerase OS=Enterobacteria phage T3 GN=1 PE=3
SV=1
Length = 884
Score = 269 bits (687), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 240/862 (27%), Positives = 394/862 (45%), Gaps = 138/862 (16%)
Query: 209 LAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM 268
LA LP + + W E+ + ++ +AYAP ++LL + A I +
Sbjct: 75 LATLLPKLTTRIVEWL---------EEYASKKGRKPSAYAP-LQLLKPEASAFITLK--- 121
Query: 269 GLVMAGHEDRCVQVVQAAVH-IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK-EK 326
+++A + +QAA +G AIE E R + ++ + K EE L+K
Sbjct: 122 -VILASLTSTNMTTIQAAAGMLGKAIEDEAR----FGRIRDLEAKHFKKHVEEQLNKRHG 176
Query: 327 ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNP 385
++ +K ++++ M + LL E W ++T +G RL+E+LIE T V+ +
Sbjct: 177 QVYKKAFMQVVEAD--MIGRGLLGGEAWSSWDKETTMHVGIRLIEMLIESTGLVELQRHN 234
Query: 386 ADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVE-CDPLVLEGLDRSAKHMLIPYVPML 444
A + D H + + KR G + P+ + P +
Sbjct: 235 AGNAGSD------HEALQLAQEYVDVLAKRAGALAGISPM---------------FQPCV 273
Query: 445 VPPKKWKGYNKGGYLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
VPPK W GGY P ++RTH + L M +V++A++ +T W
Sbjct: 274 VPPKPWVAITGGGYWANGRRPLALVRTHSKK----GLMRYEDVYMPEVYKAVNLAQNTAW 329
Query: 502 RVNKQVLSVLESIWVSGGN--IAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRKAKKI 557
++NK+VL+V+ I V+ N +A + +P KP D E +++WK + ++
Sbjct: 330 KINKKVLAVVNEI-VNWKNCPVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAGIYRL 388
Query: 558 NQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEF 617
++ R S+R E L A + ++ ++P+N+D+RGR Y + P N +D+ +G+L
Sbjct: 389 DKARVSRRISLEFMLEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKGLLTL 447
Query: 618 AEGRPLGKSGLRWLKIHLANLF------------------------SENPINGSRWWLTA 653
A+G+P+G+ G WLKIH AN +++PIN + WW
Sbjct: 448 AKGKPIGEEGFYWLKIHGANCAGVDKVPFPERIAFIEKHVDDILACAKDPINNT-WWAEQ 506
Query: 654 EDPFQCLAACINLSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVN 710
+ PF LA C + H +S+ LP+ DGSC+G+QH++A+ R+ + AVN
Sbjct: 507 DSPFCFLAFCFEYA-----GVTHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVN 561
Query: 711 LVAGEKPADVYSEIAVRVHEIMKRD------------SNKDPSKHPQ-------ALLAKI 751
L+ E D+Y +A +V+EI+K+D ++KD + + L +
Sbjct: 562 LLPSETVQDIYGIVAQKVNEILKQDAINGTPNEMITVTDKDTGEISEKLKLGTSTLAQQW 621
Query: 752 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKV 807
L V R + K++VMT YG G R+Q+ + + +F AA Y AK+
Sbjct: 622 LAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLDDTIQPAIDSGKGLMFTQPNQAAGYMAKL 681
Query: 808 TLTALGEIFEAARSIMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYC 855
A+ AA M WL AK++A+E + V WTTP G PV Q Y
Sbjct: 682 IWDAVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTKEILRHRCAVHWTTPDGFPVWQEYR 741
Query: 856 KN-ERHLIRTSLQVLALQREGNL-----VEIRKQRTAFPPNFVHSLDGSHMMMTAVACRD 909
K ++ L L LQ N ++ KQ + PNFVHS DGSH+ MT V +
Sbjct: 742 KPLQKRLDMIFLGQFRLQPTINTLKDSGIDAHKQESGIAPNFVHSQDGSHLRMTVVYAHE 801
Query: 910 A-GLH-FAGVHDSFWTHACDVDEMNQILRKKFVELY-NMPMLENLLESFQTSYPTLSF-- 964
G+ FA +HDSF T D ++ + +R+ V Y N +L + F
Sbjct: 802 KYGIESFALIHDSFGTIPADAGKLFKAVRETMVITYENNDVLADFYSQFADQLHETQLDK 861
Query: 965 -PPLPERGNFDLEEVLESPYFF 985
PPLP++GN +L+++L+S + F
Sbjct: 862 MPPLPKKGNLNLQDILKSDFAF 883
>sp|Q8L6J4|RPO1A_TOBAC DNA-directed RNA polymerase 1A (Fragment) OS=Nicotiana tabacum
GN=RPOT1-SYL PE=3 SV=2
Length = 155
Score = 266 bits (681), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 120/155 (77%), Positives = 139/155 (89%)
Query: 832 VIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNF 891
+IA EN PVRWTTPLGLPVVQPY K RHLI+TSLQ+L LQRE + V +++QRTAFPPNF
Sbjct: 1 IIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNF 60
Query: 892 VHSLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENL 951
VHSLDGSHMMMTA+AC+++GL FAGVHDS+WTHA DVD+MN+ILR+KFVELY+ P+LENL
Sbjct: 61 VHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENL 120
Query: 952 LESFQTSYPTLSFPPLPERGNFDLEEVLESPYFFN 986
LESFQ S+P L FPPLPERG+FDL EVLESPYFFN
Sbjct: 121 LESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 155
>sp|P00573|RPOL_BPT7 DNA-directed RNA polymerase OS=Enterobacteria phage T7 GN=1 PE=1
SV=2
Length = 883
Score = 247 bits (631), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 248/907 (27%), Positives = 396/907 (43%), Gaps = 155/907 (17%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + HR
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGM----------------VSLHRQNA 234
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ +T +E P E + A + + P + P +VPPK W G GGY
Sbjct: 235 GVVGQDSET------IELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELK 571
+I ++R + +P KP DM + WK + + ++ R S+R E
Sbjct: 345 KHCPVEDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFM 401
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WL
Sbjct: 402 LEQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGLLTLAKGKPIGKEGYYWL 460
Query: 632 KIHLAN--------------LFSENPIN---------GSRWWLTAEDPFQCLAACINLSE 668
KIH AN EN N + WW + PF LA C +
Sbjct: 461 KIHGANCAGVDKVPFPERIKFIEENHENIMACAKSPLENTWWAEQDSPFCFLAFCFEYA- 519
Query: 669 ALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 725
H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y +A
Sbjct: 520 ----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVA 575
Query: 726 VRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQTVM 766
+V+EI++ D+ +AL + L V R + K++VM
Sbjct: 576 KKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVM 635
Query: 767 TSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAARSI 822
T YG G R+Q+ + + +F AA Y AK+ ++ AA
Sbjct: 636 TLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVEA 695
Query: 823 MGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCK------NERHLIRT 864
M WL AK++A+E + V W TP G PV Q Y K N L +
Sbjct: 696 MNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQF 755
Query: 865 SLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAV-ACRDAGLH-FAGVHDSFW 922
LQ + + ++ KQ + PNFVHS DGSH+ T V A G+ FA +HDSF
Sbjct: 756 RLQPTINTNKDSEIDAHKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFG 815
Query: 923 THACDVDEMNQILRKKFVELY-NMPMLENLLESF--QTSYPTLS-FPPLPERGNFDLEEV 978
T D + + +R+ V+ Y + +L + + F Q L P LP +GN +L ++
Sbjct: 816 TIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLHESQLDKMPALPAKGNLNLRDI 875
Query: 979 LESPYFF 985
LES + F
Sbjct: 876 LESDFAF 882
>sp|P18147|RPOL_BPK11 DNA-directed RNA polymerase OS=Enterobacteria phage K11 GN=1 PE=3
SV=1
Length = 906
Score = 238 bits (608), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 214/788 (27%), Positives = 363/788 (46%), Gaps = 132/788 (16%)
Query: 288 HIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA 345
+G A+E E R E+ Y +K + + L KRV + K +V+EA
Sbjct: 160 QLGKALEDEARFGRIREQEAAYFKKNV-----------ADQLDKRVGHVYKKAFMQVVEA 208
Query: 346 ----QKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHR 400
+ +L + W D Q +G++L+ELLIE T V+ N DV
Sbjct: 209 DMISKGMLGGDNWASWKTDEQMHVGTKLLELLIEGTGLVEMTKNKMADGSDDV------- 261
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGG 457
T ++ +V+ P +E L + A + + P + P +VPPK W GG
Sbjct: 262 --TSMQ-----------MVQLAPAFVELLSKRAGALAGISPMHQPCVVPPKPWVETVGGG 308
Query: 458 YLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
Y + P ++RTH + AL+ M +V++A++ +T W+VNK+VL+V+ I
Sbjct: 309 YWSVGRRPLALVRTHSKK----ALRRYADVHMPEVYKAVNLAQNTPWKVNKKVLAVVNEI 364
Query: 515 --W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAK--KINQERHSQRCDT 568
W G++ ++R + +P +P D EV + W A + ++ R S+RC
Sbjct: 365 VNWKHCPVGDVPA-IEREE--LPPRPDDIDTNEVARKAWRKEAAAVYRKDKARQSRRCRC 421
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
E ++ A + + + ++P+N+D+RGR Y + N +D+ +G L A+G+P+G G
Sbjct: 422 EFMVAQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGSLTLAKGKPIGLDGF 480
Query: 629 RWLKIHLAN--------------LFSEN----------PINGSRWWLTAEDPFQCLAACI 664
WLKIH AN EN P+N + WW + PF LA C
Sbjct: 481 YWLKIHGANCAGVDKVPFPERIKFIEENEGNILASAADPLNNT-WWTQQDSPFCFLAFCF 539
Query: 665 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 724
+ ++ LP+ DGSC+G+QH++A+ R+++ AVNL+ + D+Y +
Sbjct: 540 EYAGVKHHGLNYNC--SLPLAFDGSCSGIQHFSAMLRDSIGGRAVNLLPSDTVQDIYKIV 597
Query: 725 AVRVHEIM------------KRDSNKDPSKHPQ-------ALLAKILIDQVDRKLVKQTV 765
A +V+E++ ++ ++K+ + + L A+ L V RK+ K++V
Sbjct: 598 ADKVNEVLHQHAVNGSQTVVEQIADKETGEFHEKVTLGESVLAAQWLQYGVTRKVTKRSV 657
Query: 766 MTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA----AACYAAKVTLTALGEIFEAARS 821
MT YG R+Q+ + + +F AA Y AK+ A+ AA
Sbjct: 658 MTLAYGSKESLVRQQVLEDTIQPAIDNGEGLMFTHPNQAAGYMAKLIWDAVTVTVVAAVE 717
Query: 822 IMGWLGDCAKVIASENQ------------PVRWTTPLGLPVVQPYCKNER------HLIR 863
M WL AK++A+E + + W TP G PV Q Y K + L +
Sbjct: 718 AMNWLKSAAKLLAAEVKDKKTKEVLRKRCAIHWVTPDGFPVWQEYRKQNQARLKLVFLGQ 777
Query: 864 TSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDA-GLH-FAGVHDSF 921
++++ + + ++ KQ + PNFVHS DGSH+ MT V + G+ FA +HDS
Sbjct: 778 ANVKMTYNTGKDSEIDAHKQESGIAPNFVHSQDGSHLRMTVVHANEVYGIDSFALIHDSS 837
Query: 922 WTHACDVDEMNQILRKKFVELY-NMPMLENLLESF--QTSYPTLS-FPPLPERGNFDLEE 977
T D + + +R+ V+ Y + ++ + + F Q L P +P +G+ +L +
Sbjct: 838 GTIPADAGNLFKAVRETMVKTYEDNDVIADFYDQFADQLHESQLDKMPAVPAKGDLNLRD 897
Query: 978 VLESPYFF 985
+LES + F
Sbjct: 898 ILESDFAF 905
>sp|P06221|RPOL_BPSP6 DNA-directed RNA polymerase OS=Enterobacteria phage SP6 PE=2 SV=1
Length = 874
Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 214/860 (24%), Positives = 369/860 (42%), Gaps = 134/860 (15%)
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
P++E I+ ++ KK +A A ++ + + A I M +M ++ + D +Q
Sbjct: 50 IAPMAEGIQAYKEEYEGKKGRAPRALAFLQCVENEVAAYITMKVVMDML---NTDATLQA 106
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNY--KRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ A+ + IE ++R Y K KK + S+ K +++ K
Sbjct: 107 I--AMSVAERIEDQVRFSKLEGHAAKYFEKVKKSLK-----ASRTKSYRHAHNVAVVAEK 159
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHR 400
V A+K + + W ++TQ ++G+ L+E+L + + P F
Sbjct: 160 SV--AEKDADFDRWEAWPKETQLQIGTTLLEILEGSVFYNG------------EPVFMRA 205
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
+T G KT E + + Y P ++PP+ W+ GG+
Sbjct: 206 MRTY----GGKTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVIPPRPWRTPFNGGFHT 261
Query: 461 --LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW--- 515
+ S + G+R E ++ +T M KV++A++ L +T+W++NK VL+V+E +
Sbjct: 262 EKVASRIRLVKGNR---EHVRKLTQKQMPKVYKAINALQNTQWQINKDVLAVIEEVIRLD 318
Query: 516 VSGG--NIAGLVDRNDVLIPEKPLS-----------EDMTEVQKWK----WSVRKAKKIN 558
+ G + L+D+ + P P+ ++M ++W+ W A+
Sbjct: 319 LGYGVPSFKPLIDKENK--PANPVPVEFQHLRGRELKEMLSPEQWQQFINWKGECARLYT 376
Query: 559 QE--RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
E R S+ + AR+ E Y+ + +D R R Y L+ S+D+ + +L
Sbjct: 377 AETKRGSKSAAVVRMVGQARKYSAFESIYFVYAMDSRSRVYVQSSTLSPQSNDLGKALLR 436
Query: 617 FAEGRPL-GKSGLRWLKIHLANLF--------------------------SENPINGSRW 649
F EGRP+ G L+W I+ ANL+ + +P+ ++W
Sbjct: 437 FTEGRPVNGVEALKWFCINGANLWGWDKKTFDVRVSNVLDEEFQDMCRDIAADPLTFTQW 496
Query: 650 WLTAEDPFQCLAACINLSEALK---SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 706
A+ P++ LA C ++ L +HLP+HQDGSC+G+QHY+A+ R+ + A
Sbjct: 497 -AKADAPYEFLAWCFEYAQYLDLVDEGRADEFRTHLPVHQDGSCSGIQHYSAMLRDEVGA 555
Query: 707 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID------------ 754
AVNL + P D+Y +A V I K D + +
Sbjct: 556 KAVNLKPSDAPQDIYGAVAQVV--IKKNALYMDADDATTFTSGSVTLSGTELRAMASAWD 613
Query: 755 --QVDRKLVKQTVMTSVYGVTFVGAREQI-----------------KRRLEEKGH-ITDD 794
+ R L K+ VMT YG T + RE + + R K H DD
Sbjct: 614 SIGITRSLTKKPVMTLPYGSTRLTCRESVIDYIVDLEEKEAQKAVAEGRTANKVHPFEDD 673
Query: 795 RQLF----AAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPV 850
RQ + AA Y + ++ E+ +A M + A+ A N+ + +T P G +
Sbjct: 674 RQDYLTPGAAYNYMTALIWPSISEVVKAPIVAMKMIRQLARFAAKRNEGLMYTLPTGFIL 733
Query: 851 VQPYCKNERHLIRTSLQ---VLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVAC 907
Q E +RT L ++LQ E ++V+ A PNFVH D SH+++T
Sbjct: 734 EQKIMATEMLRVRTCLMGDIKMSLQVETDIVDEAAMMGAAAPNFVHGHDASHLILTVCEL 793
Query: 908 RDAGL-HFAGVHDSFWTHACDVDEMNQILRKKFVELY-NMPMLENLLESFQTSYPTLSFP 965
D G+ A +HDSF THA + + L+ + V +Y + L+ LLE + + +
Sbjct: 794 VDKGVTSIAVIHDSFGTHADNTLTLRVALKGQMVAMYIDGNALQKLLEEHEVRWMVDTGI 853
Query: 966 PLPERGNFDLEEVLESPYFF 985
+PE+G FDL E+++S Y F
Sbjct: 854 EVPEQGEFDLNEIMDSEYVF 873
>sp|P33540|RPOP_NEUCS Probable DNA-directed RNA polymerase OS=Neurospora crassa PE=3 SV=1
Length = 896
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 152/559 (27%), Positives = 258/559 (46%), Gaps = 76/559 (13%)
Query: 441 VPMLVPPKKWKGYNK------GGYLFLPSYVMRTHGSRKQQEA-LKSVTGNCMKKVFEAL 493
+PM++PP +WK + GG + + +R ++ + + +T N K++ +A+
Sbjct: 284 LPMIIPPLEWKIDDNEKIIEYGGTILNNKHRIRPLRTKSVENSDANDMTYN--KELVDAV 341
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK 553
+ + +N ++L +++ D+ D +I K + D + ++ RK
Sbjct: 342 NFKSKIPYTINLKILD-----FITRDEFINR-DKKDNVIIYKHIHPDSALLGEYMKD-RK 394
Query: 554 AKKINQ--ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
KI++ +S+ +S+A+ MKD + FY +D+RGR Y LN ++
Sbjct: 395 NPKISEITTHNSKFLYHSSIISIAKLMKDVKEFYMTVFIDWRGRFYTSSCALNIQGGELA 454
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSEN-------------------PINGSRWWLT 652
R +L F EG+ L GL+ LKI+ AN F + I+ W
Sbjct: 455 RSLLLFKEGQKLNDIGLKALKIYTANAFGLDKRSKEERLDWVEQNLHKIIDIDNYEIWRE 514
Query: 653 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 712
A++P LA + L + P + ISHLPI D +CNGLQH +A+ + + A VNL+
Sbjct: 515 ADEPLLFLACALELKGY--NEDP-NFISHLPILMDATCNGLQHLSAMVNDFVLAEKVNLL 571
Query: 713 A---GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSV 769
+ P D+YSE+ + K++ + + L +I V+R LVK+ +MT
Sbjct: 572 KSTENDNPRDLYSEVIPHI----KQEILEASKSYEHTNLERI---NVERCLVKRGLMTIT 624
Query: 770 YGVTFVGAREQIKRRLEEK---------------GHITDDRQLFAA--ACYAAKVTLTAL 812
YG T G +QI + +K I +F +K+ +L
Sbjct: 625 YGATERGIYDQIVSKFFQKDEWNKTVGLHFVCIDSDIAPKDVVFTQKNILLLSKIIYNSL 684
Query: 813 GEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCK----NERHLIRTSLQV 868
+I ++M + KV+ + PV W TP GL + Q Y K NE + +
Sbjct: 685 FKIHPNLNTLMVYFNSIVKVLCELDLPVNWVTPYGLVIQQKYNKFTKYNETTYVASKRYK 744
Query: 869 LALQREGNLVEIRKQRT--AFPPNFVHSLDGSHMMMTAVACRDAG--LHFAGVHDSFWTH 924
L L R+ + I KQ+ AF PNFVHS+DGS++++ RD G ++FA +HD F TH
Sbjct: 745 LVL-RKADTTSISKQKQIQAFIPNFVHSMDGSNIVLLINTIRDEGRKINFASIHDCFATH 803
Query: 925 ACDVDEMNQILRKKFVELY 943
A D ++ +++ F+ +Y
Sbjct: 804 ANDTAWLSWYVKQSFIRIY 822
>sp|P22372|RPOP_CLAPU Probable DNA-directed RNA polymerase OS=Claviceps purpurea PE=3
SV=1
Length = 936
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 140/575 (24%), Positives = 257/575 (44%), Gaps = 97/575 (16%)
Query: 441 VPMLVPPKKWKGYNKGGYL-----FLPSYVMRTHG----SRKQQEALKSVTGNCMKKVFE 491
+PM+V PK + GGYL +L S + + SR Q++ + ++E
Sbjct: 314 LPMIVAPKPYSKEEHGGYLLNDFDYLDSLLTKKLNMNDISRIQEKNI----------IYE 363
Query: 492 ALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSV 551
+++ + +T +++NK++L L +V + + L +++T+++
Sbjct: 364 SINKMMATAFQINKKLLKYLLEDYVFSKLLK---------LEGDDLYKNITQIEIDNMDK 414
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
R +K Q+ SQ+ + + +A ++ Y+P LD RGR YP+ + ++ SS++
Sbjct: 415 RDNQKY-QQYLSQKLLRDYIIDIATVFQNVPELYFPLKLDHRGRLYPITAYFHYQSSELA 473
Query: 612 RGVLEFAEGRPLGKS---GLRWLKIHLANLFS-------------------ENPINGSRW 649
+ +L FA + +S + +LK + A F EN IN
Sbjct: 474 KALLLFAIPDTIERSDSISIDYLKAYGATCFGNKLDKKSYDKRLQWVDANWENIINYRNN 533
Query: 650 WL--TAEDPFQCLAACIN---LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 704
L AE+ F LA C+ L++ L S + ++LP+ DG+CNG QH L
Sbjct: 534 VLLELAENKFMFLAYCLEIERLNQFLNDDSIENFKTYLPLQLDGTCNGFQHIVLLSNEVK 593
Query: 705 EAAAVNLVAGEK---PADVYSEIA--VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 759
+ +NL K P+D YS + + +H + K+D + D K +++ + R
Sbjct: 594 LYSQLNLDGKSKNQDPSDFYSFMINQLNIHLLNKKDVSTD--KEDIESYDRLINLGLSRA 651
Query: 760 LVKQTVMTSVYGV-TFVGAREQIK--------RRLEEKGHITD-------DRQLFAAACY 803
+KQ +MT Y F A+ I+ + ++EKG IT + + AC+
Sbjct: 652 NIKQAIMTKPYNAKDFTVAKYIIETLLIASEDKYIDEKG-ITRTECWYKVNETMTNVACF 710
Query: 804 AAKVTLT-ALGEI----FEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNE 858
L + EI + +S++ +L ++++ N P+ W+ P GL V Q Y +++
Sbjct: 711 RDIYLLAKCINEILFLNYPQIKSLLEYLNSISEIMLKLNLPITWSLPTGLEVHQQYMRSK 770
Query: 859 ------RHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACR---- 908
+ TSL L + + + ++ KQ+ A PN +HSLD + ++M A
Sbjct: 771 LKKTKPYTYLDTSL-TLKITDKIKMDKV-KQQIALMPNLIHSLDAASLIMLYFAFNKSIG 828
Query: 909 DAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELY 943
++F VHD + A +D + LR ++ELY
Sbjct: 829 SGVVNFYSVHDCYGVTAKYIDLLISQLRAVYIELY 863
>sp|P33539|RPOP_AGABT Probable DNA-directed RNA polymerase OS=Agaricus bitorquis PE=3 SV=1
Length = 1102
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 120/515 (23%), Positives = 232/515 (45%), Gaps = 97/515 (18%)
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWK 548
++ +++ L S K+++NK +L+ + + W + + L ++L KP+ E
Sbjct: 527 LYSSINYLNSIKFKINKAMLNFILAEWDNKD--SKLFKGYNML---KPILE--------- 572
Query: 549 WSVRKAKKINQERHSQRCDTELK---LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+K+I +E+ S L +S+A KD E FY P +DFRGR YP+ ++++
Sbjct: 573 ---TDSKEIKEEKVSSNSKYTLYSNIISLASLYKDNE-FYLPVYVDFRGRVYPLSNYISY 628
Query: 606 LSSDVCRGVLEFAEGR-PLGKSGLRWLKIHLANL----------------------FSEN 642
D+ R ++ FA+ + L SG L ++LANL N
Sbjct: 629 QGGDLARSLILFADTKCVLNNSGKECLNVYLANLAGYDKLPWSERLTKVDGIIKEYLESN 688
Query: 643 PINGSRWWLTAED----PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAA 698
I+ +++ D PFQ ++ I ++ L S+P + IS+ PI D SC+G+QH AA
Sbjct: 689 EISNTKYIEDNIDKISEPFQFIS--IMYAKLLSISNPKANISN-PILFDASCSGIQHIAA 745
Query: 699 LGRNTLEAAAVNLVAG------EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 752
L A+ VNL + P D Y+ + +I + N D ++
Sbjct: 746 LTLEKELASNVNLYTDSSNPKEDYPQDFYT---YALEKIRDKLINSDITELRDI------ 796
Query: 753 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG------------------HITDD 794
+++RK++K++VMT Y ++ G E + K + D
Sbjct: 797 --KLNRKIIKRSVMTIPYNISMAGIGEHLMEHFTVKTVLKYRYVVIPGSATISSKDVYLD 854
Query: 795 RQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPY 854
+ C K+ L + + R + + + N P+ W TP GL +
Sbjct: 855 YSKYGQLC---KIIYFVLTKELPSLRLLSNYFESMIDIFVKLNIPITWVTPSGLKIKYTN 911
Query: 855 CKNERHLIRTSL----QVLALQREGNLVEIRKQRTAFPPNFVHSLDGS--HMMMTAVACR 908
K + ++TS+ ++ ++ + +++ + +F PNF+HSLD S H+++ +V+ +
Sbjct: 912 IKFKPQKVKTSVLNTSKITTIKLPTDSLDVLSTKRSFMPNFIHSLDASNVHLLLNSVSYK 971
Query: 909 DAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELY 943
+ ++ VHD F + A ++ ++ ++++ F+ +Y
Sbjct: 972 NLPVY--TVHDCFASTANNMFKLEKLVKNAFINIY 1004
>sp|P33541|RPOP_NEUIN Probable DNA-directed RNA polymerase OS=Neurospora intermedia PE=3
SV=2
Length = 811
Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 146/621 (23%), Positives = 257/621 (41%), Gaps = 144/621 (23%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN--------CMKKVFEA 492
+PM+ PP W +GG L + + Q E+L V G+ K++
Sbjct: 243 LPMVCPPLPWGHGIRGGNL--------INLTDTQDESL--VVGSFHHRHKIAITDKLYNV 292
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVR 552
++ L + K+++N +LS L++ G I + +
Sbjct: 293 INKLNAFKFKINGDLLSYLQN---EGSFILDFYK-----------------------NTK 326
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
K IN + + +AR + FY N+D+RGR Y +L++ S++
Sbjct: 327 KDTYINNM---------ITIDIARTYLNTP-FYLNVNIDWRGRIYTQSFYLDYQGSELSL 376
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFS------------------ENPIN----GSRWW 650
++ EG+ L + GL + ++ AN+++ EN N +
Sbjct: 377 ALINLFEGKKLDEKGLFFFYVYGANIYNDGGKFSKKSFQDRFNWVVENLDNIIAMDKEFI 436
Query: 651 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 710
L AE P A C+ + + LK + + V + PI D +C+G+QH+AA+ + VN
Sbjct: 437 LKAESPTLFAAFCLTMRK-LKENPDYPVFN--PIFLDATCSGVQHFAAMLLDLELGKYVN 493
Query: 711 LV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSV 769
L+ +GE D YS++ +++ + + K K + I ++R L+K+ +MT
Sbjct: 494 LINSGESVNDFYSQLIPAINKAINESAEK---KFKNLKFSDI---SLNRSLLKKVIMTKS 547
Query: 770 YGVTFVGAREQIKRRLE--EKGHITDDRQL-------------------FAAACYAAKVT 808
Y VT G EQ+K +LE EK I+ +++ F A+ +
Sbjct: 548 YNVTTYGITEQLKSKLEKVEKIVISKGKEIKVYDYLVPTKNGDFVVLDTFEVETLASIIN 607
Query: 809 LTALGEIFEAARSIMGWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQV 868
+ F SI +L AK+ + P+ W+TP GL + Q Y N + + ++
Sbjct: 608 DNIFNQ-FPKLHSIYDYLTRLAKIYLKLDIPLSWSTPDGLELTQRY--NLSKVKKLTINF 664
Query: 869 LALQREG------NLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHFAGVHDSFW 922
L R N + R++ A PN +HSLD SH+ M + D+ + +H+ F
Sbjct: 665 LGKNRTAVLRSWVNEKDSRREVQAIIPNIIHSLDASHLTMI-IDSWDS--YILPIHECFG 721
Query: 923 THACDVDEMNQILRKKFVELY---------NMPMLENLL-----------ESF-----QT 957
TH D+ ++ + +R+ F+ LY + ENL E F
Sbjct: 722 THPNDMYKLAEQVRECFILLYSKNDFLNKIDYKFRENLKDYKIEIVNKNGEDFVKIKGNK 781
Query: 958 SYPTLSFPPLPERGNFDLEEV 978
Y L P LP+ G ++E++
Sbjct: 782 RYEYLPLPVLPQMGELNVEDI 802
>sp|O03685|RPOP_GELSP Probable DNA-directed RNA polymerase OS=Gelasinospora sp. (strain
G114) PE=3 SV=1
Length = 831
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 106/410 (25%), Positives = 186/410 (45%), Gaps = 65/410 (15%)
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSE-- 641
FY N+D+RGR Y +L + S++ ++ EG+ L + GL + ++ AN+++E
Sbjct: 368 FYLNVNIDWRGRIYTQSFYLGYQGSELSLALINLFEGQKLDEEGLFFFYVYGANIYNEGG 427
Query: 642 -------------------NPINGSR-WWLTAEDPFQCLAACINLSEALKSSSPHSVISH 681
N I + + L AE P A C+ + + LK + H V +
Sbjct: 428 KFSKKSFQDRFNWVVENLDNIIAMDKDFILKAESPTLFAAFCLTMRK-LKENPDHPVFN- 485
Query: 682 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDP 740
PI D +C+G+QH+AA+ + VNL+ +GE D YS++ +++ + + K
Sbjct: 486 -PIFLDATCSGVQHFAAMLLDLELGKYVNLINSGESVNDFYSQLIPAINKAINESAEK-- 542
Query: 741 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE--EKGHITDDRQL- 797
K + I ++R L+K+ +MT Y VT G EQ+K +LE EK I+ +++
Sbjct: 543 -KLKNVKFSDI---SLNRSLLKKVIMTKSYNVTTYGITEQLKSKLEKVEKIIISKGKEIK 598
Query: 798 ------------------FAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQP 839
F A+ + + F SI +L K+ + P
Sbjct: 599 VYDYLVPTKNGKFVVLDTFEVETLASIINDNIFNQ-FPKLHSIYEYLTRLTKIYLKLDIP 657
Query: 840 VRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNL------VEIRKQRTAFPPNFVH 893
+ +TP GL + Q Y N + + ++ L R L + R++ A PN +H
Sbjct: 658 ISCSTPDGLELTQRY--NLSKVQKLTINFLGKNRTAVLRSWVSDKDSRREVPAIIPNIIH 715
Query: 894 SLDGSHMMMTAVACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELY 943
SLD +H+ M + D+ + +HD F TH D+ ++ + +R+ F+ LY
Sbjct: 716 SLDAAHLPM-LIDSWDS--YILPIHDCFGTHPNDMFKLAEQVRECFILLY 762
>sp|Q01521|RPOP_PODAS Probable DNA-directed RNA polymerase OS=Podospora anserina PE=3
SV=1
Length = 948
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 158/670 (23%), Positives = 271/670 (40%), Gaps = 107/670 (15%)
Query: 337 IKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPA 396
IK+K E QK K +D KL + + L+ + V A
Sbjct: 252 IKNKLSKEEQKCYYLSNWKKDNKDIVEKLEDNIFQFLLGQKISNLTKDTDLLDMETVTMA 311
Query: 397 FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY-VPMLVPPKKWKGYNK 455
+R K+I+ P +K +L+ L ++P +PM+V PK +
Sbjct: 312 YRE--KSIVWKPTKK-------------ILKVLPEDGTLFVLPKKIPMIVKPKPYTTRVN 356
Query: 456 GGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESI 514
GGYL Y+ K++ L+ T ++F+ ++ L S +++N VL +E
Sbjct: 357 GGYLSNDLYI--NENIVKEKWNLRDNTQILHFNQIFDLVNNLSSIGYKINTDVLDFIE-- 412
Query: 515 WVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELK--- 571
+ G + +N+++ P + KK E S EL+
Sbjct: 413 -LYGSDYF----KNELIDPRYS--------HPLLKKSKLTKKEKMELDSFLAKKELQENI 459
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE-GRPLGKS--GL 628
L +A ++ F+ P N DFRGR Y +LN+ S+D+ + +L F++ GR K L
Sbjct: 460 LGLAEIFRNIPEFFIPVNADFRGRVYCTPEYLNYQSTDLAKSLLLFSKPGRMYKKDYIAL 519
Query: 629 RWLKIHLANLFSENPI--NGSRWWLT-----------------AEDPFQCLAACINLSEA 669
+LKI+ + F + + N W+ A++ F LA CI +
Sbjct: 520 SYLKIYGGSSFGLDKLSANDRIKWVDKNLNNIKNYRNGKLIKEAKNKFLFLAFCIEYNRY 579
Query: 670 LKSSSPHSVI---SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG---EKPADVYSE 723
L H V ++LPI D +CNG QH + L ++ + +NL + P D Y+
Sbjct: 580 LNCLDNHDVSWFDTYLPIQMDATCNGFQHLSLLSLDSNLSKELNLSESTWDDVPKDFYTF 639
Query: 724 IAVRVHEIMKRD--SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 781
+ V + +K + NK+ + +++ ++ R+++K+ +MT Y V+ I
Sbjct: 640 LVVCFIDYLKTELLENKNLTPKESESYNRLINMKIIREIIKKGIMTIPYNVSNFSLINYI 699
Query: 782 KRRLEEKGHITDDRQLFAAACYAAK---------VTLTALG--------EIFEAARSIMG 824
+ E +D L Y K + T LG E F ++
Sbjct: 700 REGFE-----LEDNSL---EWYIYKNEPSIRLKSLDFTVLGKGLRKVLHEKFHKLDLLLK 751
Query: 825 WLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLI--------RTSLQVLALQREGN 876
+L A+V P+ WT P GL V Q Y + I + S++VL + N
Sbjct: 752 YLDQVARVCTLLEIPIIWTLPTGLVVRQSYMIRDEVRIKPFNHSNKKFSMKVLNKTQFNN 811
Query: 877 LVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGL---HFAGVHDSFWTHACDVDEMNQ 933
KQ TAF PN VHSLD + + + + + +HD F A ++ +
Sbjct: 812 ----SKQITAFMPNLVHSLDAASLTLLLDFYFKESIDVKNIYTIHDCFAVPANKMECLIS 867
Query: 934 ILRKKFVELY 943
+L+ +++LY
Sbjct: 868 LLKLTYIKLY 877
>sp|P10581|RPOP_MAIZE Probable DNA-directed RNA polymerase OS=Zea mays PE=3 SV=1
Length = 1098
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/420 (20%), Positives = 155/420 (36%), Gaps = 111/420 (26%)
Query: 585 YYPHNLDFRGRAY---PMHPHLNHLSSDVCRGVLEFAEGRP------------------- 622
Y+P LDFRGR Y P H H D+ R ++ F E
Sbjct: 530 YFPIFLDFRGRNYRHGPFHFH----ERDLVRSLIIFDESDDSAAHTINSDVGDRILHNFL 585
Query: 623 -----------LGKSGLRWLKIHLANL-----FSENPINGSRWWLTAEDPFQCLAACINL 666
+ + L ++ + ++ F E I L PFQ +++CI+L
Sbjct: 586 ISAAYHKSKFGVYREALEFIYNKIEDMQSKPTFFEKDIFVDT--LCCRHPFQYISSCISL 643
Query: 667 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA-----GEKPADVY 721
+ + SV+ + P+ QD S + Q + + NL+ G D+Y
Sbjct: 644 -KTYADTKDLSVLRYTPVFQDASASAYQIMSYFLLDIDYGIHTNLLKKTNTDGRYIRDIY 702
Query: 722 S----------------EIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTV 765
E+A+++ ++D +++LAKI + DR +VK+
Sbjct: 703 EFMWGCLIKYLIAEEKIELAIKLLTPNEKDQ--------ESVLAKI-VSIFDRNVVKKMF 753
Query: 766 MTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGW 825
M +YG T ++ ++ L+ K + KV + ++ + + W
Sbjct: 754 MPMMYGKTDYTLKKDVEDLLKGKSDSEGINLISKHISTYWKVNFGKMKDLMDLINYV-SW 812
Query: 826 LGDCAKVIASENQPVRWTTPLGLPVVQPY--------------CKNERHLIRTSLQVLAL 871
G A +++PV ++TP + +Q Y KN ++T+ + +
Sbjct: 813 FG------AGQDKPVVYSTPYWV-TLQTYKWRKRVKMKIQYETTKNNEKEVKTTSAKMLI 865
Query: 872 QREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRD--------AGLHFAGVHDSFWT 923
N +IRK T+ NF+H D TA+ D + + VHD+F T
Sbjct: 866 PLNDN--DIRKSSTSTFANFIHQKDA----FTAIQLVDFINKLENASSIPIYAVHDNFIT 919
>sp|P11716|RYR1_RABIT Ryanodine receptor 1 OS=Oryctolagus cuniculus GN=RYR1 PE=1 SV=1
Length = 5037
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 24/155 (15%)
Query: 462 PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK----------WRVNKQVLSVL 511
P YV ++ S+ +++A GN + E L+ + K + K +
Sbjct: 2712 PDYVDASYSSKAEKKATVDAEGNFDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKI 2771
Query: 512 ESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKW------------KWSVRKAKKINQ 559
++ W G N+ + + +L P K SE E+ +W +W++ KA++ +
Sbjct: 2772 QNNWSYGENVDEELKTHPMLRPYKTFSEKDKEIYRWPIKESLKAMIAWEWTIEKAREGEE 2831
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
ER ++ K+S + D Y P D G
Sbjct: 2832 ERTEKK--KTRKISQTAQTYDPREGYNPQPPDLSG 2864
>sp|Q00889|PSG6_HUMAN Pregnancy-specific beta-1-glycoprotein 6 OS=Homo sapiens GN=PSG6
PE=2 SV=1
Length = 435
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 8 SQIQYPPTCSTSTTTATRKALNIFNTKRDDGSSKILHFLHSCSSSSSSSSSFPVNLKSSS 67
QI Y P S T + +L I N ++D S LH + + + F V L S +
Sbjct: 86 GQIIYGPAYSGRETVYSNASLLIQNVTQEDAGSYTLHIIKRGDGTGGVTGYFTVTLYSET 145
Query: 68 SKP----TRLRPRPLQDSIQ 83
KP + L PR + ++++
Sbjct: 146 PKPSISSSNLNPREVMEAVR 165
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 359,349,783
Number of Sequences: 539616
Number of extensions: 15069523
Number of successful extensions: 50609
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 49943
Number of HSP's gapped (non-prelim): 385
length of query: 986
length of database: 191,569,459
effective HSP length: 127
effective length of query: 859
effective length of database: 123,038,227
effective search space: 105689836993
effective search space used: 105689836993
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)