Query 001983
Match_columns 986
No_of_seqs 591 out of 3768
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 13:51:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1859 Leucine-rich repeat pr 100.0 6.6E-99 1E-103 862.6 5.0 940 5-977 1-1050(1096)
2 KOG4194 Membrane glycoprotein 99.9 2.2E-23 4.7E-28 237.8 4.4 325 26-354 102-485 (873)
3 KOG0444 Cytoskeletal regulator 99.9 1.3E-23 2.8E-28 239.8 0.5 291 24-321 30-373 (1255)
4 PLN00113 leucine-rich repeat r 99.8 3E-20 6.5E-25 235.0 17.1 241 67-322 122-368 (968)
5 KOG4194 Membrane glycoprotein 99.8 8.2E-22 1.8E-26 225.0 2.2 253 66-323 81-354 (873)
6 PLN00113 leucine-rich repeat r 99.8 4.1E-20 8.8E-25 233.8 16.3 253 67-323 168-441 (968)
7 KOG0472 Leucine-rich repeat pr 99.8 1.8E-20 3.9E-25 207.2 -3.4 243 24-296 66-310 (565)
8 KOG0444 Cytoskeletal regulator 99.8 2.9E-20 6.4E-25 212.7 -1.7 259 25-296 102-375 (1255)
9 KOG4237 Extracellular matrix p 99.7 5.9E-18 1.3E-22 187.4 5.2 294 56-355 35-391 (498)
10 KOG0472 Leucine-rich repeat pr 99.7 2.5E-19 5.3E-24 198.3 -7.1 263 29-326 48-313 (565)
11 KOG0618 Serine/threonine phosp 99.7 1.6E-17 3.5E-22 198.6 2.7 268 27-323 242-513 (1081)
12 PRK15387 E3 ubiquitin-protein 99.7 4.8E-16 1E-20 190.3 14.6 245 27-328 202-463 (788)
13 PRK15370 E3 ubiquitin-protein 99.7 2.7E-16 5.9E-21 192.9 11.9 263 24-333 176-438 (754)
14 KOG1259 Nischarin, modulator o 99.7 4.9E-17 1.1E-21 174.7 4.5 305 12-336 125-453 (490)
15 KOG0618 Serine/threonine phosp 99.6 5E-17 1.1E-21 194.5 1.5 253 28-298 47-422 (1081)
16 PRK15387 E3 ubiquitin-protein 99.6 1.4E-15 3.1E-20 186.2 13.6 234 26-298 222-460 (788)
17 KOG0617 Ras suppressor protein 99.6 3E-16 6.5E-21 157.9 -0.3 163 76-274 23-189 (264)
18 KOG4237 Extracellular matrix p 99.6 5.8E-16 1.3E-20 171.8 1.2 254 30-301 50-364 (498)
19 PLN03210 Resistant to P. syrin 99.6 3.5E-14 7.7E-19 183.3 17.3 272 25-321 588-904 (1153)
20 PRK15370 E3 ubiquitin-protein 99.5 7.3E-15 1.6E-19 180.5 8.2 229 24-297 197-429 (754)
21 cd00116 LRR_RI Leucine-rich re 99.5 2.3E-14 5E-19 157.7 10.6 219 78-326 42-294 (319)
22 KOG0617 Ras suppressor protein 99.5 1.8E-16 4E-21 159.5 -6.1 183 106-325 28-214 (264)
23 PF14580 LRR_9: Leucine-rich r 99.5 7E-15 1.5E-19 151.4 3.4 156 178-337 7-165 (175)
24 PLN03210 Resistant to P. syrin 99.5 2.9E-13 6.4E-18 174.9 18.7 280 18-323 550-859 (1153)
25 cd00116 LRR_RI Leucine-rich re 99.5 2.4E-14 5.1E-19 157.6 6.9 258 27-322 24-319 (319)
26 KOG3207 Beta-tubulin folding c 99.4 1.1E-14 2.4E-19 163.6 -2.0 312 3-337 47-379 (505)
27 KOG0532 Leucine-rich repeat (L 99.2 4.9E-12 1.1E-16 146.1 2.6 176 109-299 73-250 (722)
28 KOG0532 Leucine-rich repeat (L 99.2 9.3E-13 2E-17 151.9 -5.2 192 65-294 77-271 (722)
29 PF14580 LRR_9: Leucine-rich r 99.1 5.6E-11 1.2E-15 122.7 6.3 134 197-333 3-136 (175)
30 COG4886 Leucine-rich repeat (L 99.0 3.1E-10 6.7E-15 130.1 7.2 130 166-298 161-292 (394)
31 COG4886 Leucine-rich repeat (L 99.0 3.3E-10 7.3E-15 129.8 6.3 181 83-275 112-294 (394)
32 KOG2982 Uncharacterized conser 99.0 3.9E-10 8.4E-15 122.3 5.3 228 76-337 60-304 (418)
33 KOG3207 Beta-tubulin folding c 99.0 1E-10 2.2E-15 132.1 0.7 211 108-327 118-343 (505)
34 KOG0531 Protein phosphatase 1, 98.9 4E-10 8.6E-15 130.9 1.1 229 81-326 89-321 (414)
35 KOG1909 Ran GTPase-activating 98.8 1.1E-09 2.4E-14 121.3 1.6 223 25-271 29-283 (382)
36 KOG0531 Protein phosphatase 1, 98.8 5.9E-10 1.3E-14 129.4 -2.2 246 24-298 70-320 (414)
37 KOG1259 Nischarin, modulator o 98.7 1.3E-09 2.8E-14 118.3 -0.6 132 188-325 281-414 (490)
38 KOG1909 Ran GTPase-activating 98.7 6.9E-09 1.5E-13 115.1 3.6 228 67-323 34-311 (382)
39 KOG1644 U2-associated snRNP A' 98.5 1.8E-07 4E-12 97.5 5.4 118 214-334 43-162 (233)
40 PLN03150 hypothetical protein; 98.3 6.9E-07 1.5E-11 109.3 7.5 104 88-224 419-526 (623)
41 KOG1859 Leucine-rich repeat pr 98.3 2.6E-08 5.7E-13 118.1 -4.6 132 192-330 165-299 (1096)
42 PLN03150 hypothetical protein; 98.3 1.1E-06 2.4E-11 107.6 7.5 104 112-248 419-527 (623)
43 PF13855 LRR_8: Leucine rich r 98.2 8.7E-07 1.9E-11 75.4 3.0 59 236-295 1-61 (61)
44 PF13855 LRR_8: Leucine rich r 98.1 1.2E-06 2.7E-11 74.5 2.6 58 168-225 1-61 (61)
45 KOG2123 Uncharacterized conser 98.1 3.6E-07 7.8E-12 99.0 -2.3 116 212-330 18-135 (388)
46 KOG1644 U2-associated snRNP A' 98.1 4E-06 8.8E-11 87.7 5.0 125 171-296 22-153 (233)
47 COG5238 RNA1 Ran GTPase-activa 97.8 1.4E-05 2.9E-10 86.8 4.6 23 107-129 88-110 (388)
48 KOG4658 Apoptotic ATPase [Sign 97.8 1.8E-05 3.9E-10 100.0 4.4 65 80-145 564-628 (889)
49 KOG4658 Apoptotic ATPase [Sign 97.7 1.6E-05 3.4E-10 100.6 3.6 63 86-148 544-608 (889)
50 KOG4579 Leucine-rich repeat (L 97.7 1.6E-06 3.4E-11 85.9 -4.1 106 169-274 28-139 (177)
51 KOG2120 SCF ubiquitin ligase, 97.7 1.3E-06 2.8E-11 95.5 -5.6 175 111-320 185-373 (419)
52 KOG2982 Uncharacterized conser 97.7 3.2E-05 6.9E-10 84.9 4.9 204 65-298 73-292 (418)
53 COG5238 RNA1 Ran GTPase-activa 97.7 1.7E-05 3.7E-10 86.1 1.8 201 25-250 29-256 (388)
54 KOG4579 Leucine-rich repeat (L 97.6 6.4E-06 1.4E-10 81.7 -2.0 132 192-329 28-165 (177)
55 PF12799 LRR_4: Leucine Rich r 97.6 7.8E-05 1.7E-09 60.1 3.8 41 169-209 2-42 (44)
56 KOG2739 Leucine-rich acidic nu 97.4 0.0001 2.2E-09 79.9 3.6 113 191-325 43-156 (260)
57 KOG2120 SCF ubiquitin ligase, 97.4 2.3E-05 5E-10 86.0 -2.1 107 187-293 256-373 (419)
58 PF12799 LRR_4: Leucine Rich r 97.4 0.00016 3.4E-09 58.3 3.2 36 238-273 3-39 (44)
59 KOG3665 ZYG-1-like serine/thre 97.2 0.00019 4.2E-09 88.8 3.7 106 167-272 147-264 (699)
60 PRK15386 type III secretion pr 97.2 0.00091 2E-08 77.8 8.2 138 83-269 48-188 (426)
61 PRK15386 type III secretion pr 97.1 0.0024 5.1E-08 74.4 10.7 110 169-293 73-187 (426)
62 KOG2123 Uncharacterized conser 96.9 7.8E-05 1.7E-09 81.4 -3.6 80 167-247 18-99 (388)
63 KOG3665 ZYG-1-like serine/thre 96.8 0.00093 2E-08 82.9 3.9 103 168-271 122-233 (699)
64 KOG2739 Leucine-rich acidic nu 95.6 0.0088 1.9E-07 65.3 3.5 91 234-326 41-132 (260)
65 PF13306 LRR_5: Leucine rich r 95.3 0.042 9.2E-07 52.6 6.6 112 167-285 11-128 (129)
66 KOG3763 mRNA export factor TAP 95.0 0.0095 2.1E-07 70.6 1.5 89 234-325 216-314 (585)
67 KOG4308 LRR-containing protein 94.7 0.00092 2E-08 79.6 -8.2 182 89-298 89-305 (478)
68 PF13306 LRR_5: Leucine rich r 94.2 0.079 1.7E-06 50.7 5.4 42 82-125 7-48 (129)
69 KOG4308 LRR-containing protein 93.3 0.0041 8.8E-08 74.2 -6.4 162 166-327 113-307 (478)
70 KOG1947 Leucine rich repeat pr 93.2 0.079 1.7E-06 61.7 4.2 38 84-121 185-224 (482)
71 KOG0473 Leucine-rich repeat pr 89.9 0.014 2.9E-07 63.0 -6.2 87 208-296 37-124 (326)
72 PF00560 LRR_1: Leucine Rich R 89.4 0.21 4.5E-06 34.3 1.4 22 169-190 1-22 (22)
73 KOG4341 F-box protein containi 88.8 0.097 2.1E-06 60.6 -0.9 127 189-317 292-433 (483)
74 KOG4341 F-box protein containi 87.6 0.21 4.5E-06 58.0 0.7 131 166-296 292-439 (483)
75 PF00560 LRR_1: Leucine Rich R 84.4 0.38 8.2E-06 33.0 0.5 20 112-132 1-20 (22)
76 KOG0473 Leucine-rich repeat pr 82.7 0.075 1.6E-06 57.5 -5.3 85 187-271 38-124 (326)
77 KOG1947 Leucine rich repeat pr 80.1 0.84 1.8E-05 53.2 1.5 107 190-296 187-308 (482)
78 PF13504 LRR_7: Leucine rich r 78.7 1.3 2.8E-05 28.7 1.4 16 169-184 2-17 (17)
79 PF13504 LRR_7: Leucine rich r 76.8 1.5 3.3E-05 28.4 1.3 14 259-272 2-15 (17)
80 TIGR00864 PCC polycystin catio 74.7 2.1 4.6E-05 59.8 3.2 38 264-302 1-38 (2740)
81 PF13516 LRR_6: Leucine Rich r 66.9 2.3 5E-05 29.5 0.5 22 110-131 1-22 (24)
82 smart00369 LRR_TYP Leucine-ric 65.2 5 0.00011 28.3 2.0 19 168-186 2-20 (26)
83 smart00370 LRR Leucine-rich re 65.2 5 0.00011 28.3 2.0 19 168-186 2-20 (26)
84 smart00369 LRR_TYP Leucine-ric 63.5 6.3 0.00014 27.7 2.2 19 257-275 1-19 (26)
85 smart00370 LRR Leucine-rich re 63.5 6.3 0.00014 27.7 2.2 19 257-275 1-19 (26)
86 KOG3763 mRNA export factor TAP 61.0 6.3 0.00014 47.7 2.9 75 255-332 215-292 (585)
87 KOG3864 Uncharacterized conser 60.8 1.3 2.8E-05 47.4 -2.5 32 192-223 102-135 (221)
88 KOG3864 Uncharacterized conser 53.5 9.2 0.0002 41.1 2.4 81 62-142 100-183 (221)
89 PHA02858 EIF2a-like PKR inhibi 52.8 23 0.00049 32.9 4.4 70 827-901 6-79 (86)
90 smart00365 LRR_SD22 Leucine-ri 51.4 13 0.00028 27.0 2.1 15 192-206 3-17 (26)
91 smart00365 LRR_SD22 Leucine-ri 44.8 14 0.00031 26.8 1.5 17 213-229 2-18 (26)
92 smart00364 LRR_BAC Leucine-ric 41.2 15 0.00032 26.8 1.1 17 169-185 3-19 (26)
93 smart00364 LRR_BAC Leucine-ric 38.5 20 0.00042 26.2 1.4 18 258-275 2-19 (26)
94 smart00368 LRR_RI Leucine rich 35.5 28 0.00061 25.3 1.9 17 111-127 2-18 (28)
95 PF15410 PH_9: Pleckstrin homo 35.1 32 0.00069 33.5 2.8 30 893-922 86-115 (119)
96 TIGR00864 PCC polycystin catio 31.3 38 0.00081 48.4 3.4 60 289-351 1-64 (2740)
No 1
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=100.00 E-value=6.6e-99 Score=862.64 Aligned_cols=940 Identities=41% Similarity=0.579 Sum_probs=806.9
Q ss_pred chhhHHHHHHHHHhhcCcccccCCeEEEec-CCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHh
Q 001983 5 TGDRYLEKLVKFVEQQAGPLIEGSIVLKLN-PAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRIL 83 (986)
Q Consensus 5 ~G~~yl~~lv~~l~~~~~~lL~~l~~L~L~-~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L 83 (986)
+|++|++.+..+|+.+++.++.+..+|+|. +..++....+|..+++|+...-+.+.+++++.+.+.++.+.+.++...+
T Consensus 1 ~~d~~l~kLa~lLre~gD~lLsg~~tL~L~~p~l~~lnh~~l~s~~EL~lg~~g~~~~~f~a~~s~~ads~vl~qLq~i~ 80 (1096)
T KOG1859|consen 1 TGDRYLEKLANLLRENGDKLLSGTFTLKLNGPALLHLNHLRLISLRELELGLSGAPVDYFRAYVSDNADSRVLEQLQRIL 80 (1096)
T ss_pred CccHHHHHHHHHHHhcccceecceeEEEeccHHHHHHHHHHHHhhHHHhhccCCCCCceeEEecCCcccchHHHHHHHHH
Confidence 699999999999999999999999999999 5566677777888899998888999999999999999999999999888
Q ss_pred cCCCCCcEEEccCCCCCCCC-CcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhccccccccc
Q 001983 84 KLLTSLKVVSALPPPARDPT-PLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (986)
Q Consensus 84 ~~L~nLk~L~Ls~N~Ls~~l-P~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~ 162 (986)
.-+++++.|.+-.-.-.+.. |-.|..+..|++|.|.+|.|.. ..++..+.+.++.++|+|.+..+++++..++.++.
T Consensus 81 d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 81 DFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDIS 158 (1096)
T ss_pred HHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccc
Confidence 88999999998887776666 8889999999999999999976 77899999999999999999999999999999999
Q ss_pred CCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeec
Q 001983 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (986)
Q Consensus 163 ~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~ 242 (986)
+.+.|..|...++++|.|..+..++.-++.|+.|+|++|+++.+..+..|+.|++|||++|.|+.+|.+...-.+|..|.
T Consensus 159 ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred cchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766556799999
Q ss_pred cCCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcC---CCceeecCC
Q 001983 243 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA---HPAKLKVDG 319 (986)
Q Consensus 243 Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~---~L~lL~Ldg 319 (986)
|++|.++.+.++.++.+|+.|||++|.|.....+..++.|..|+.|+|.|||++|.+|+|...+.++. .+..+.|||
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDg 318 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDG 318 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecc
Confidence 99999999999999999999999999999998888899999999999999999999999999999887 788999999
Q ss_pred CccChhHHHHHHHHHHhhcCCCCCCCccCCCCCCCCCCCchhhhhhhhhhhhhccccccccccC--CCCCCCccCccccc
Q 001983 320 KEISTRELWERQLIIARRQKRPAGFGFYSPAKGNADGDGNANRKRKKACRLASIESEEESTCVG--SDRESVSCDNEIES 397 (986)
Q Consensus 320 N~Is~~e~~~~~~l~~~~~~~p~~~~~~~P~~~~~~~~~~~~~k~kk~rRla~I~~~e~~~c~~--S~qeS~sc~~~s~s 397 (986)
..++..++++.+.....+...|..++.++|+......++++.++++++.+++.+..+++++.+. ++.++..|+.+..+
T Consensus 319 k~l~~~efwk~~s~~~hr~~~p~s~~~~S~a~~~~~~dgS~~~s~gki~tl~~ihs~~~s~~v~r~S~~e~at~DpE~~s 398 (1096)
T KOG1859|consen 319 KALGGREFWKRQSGVSHRSSRPASYGFYSPARSENTSDGSQFRSKGKIYTLASIHSEDESTYVNRISDCESATCDPEESS 398 (1096)
T ss_pred eeccchhhhhhhhheecCCCCCCCCCCCCchhccCCCccchhhhcCceeecccccchhhhheeccccccccccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999988887 89999999988776
Q ss_pred c--ccccCCcchHHHHHHHHHHHHHhhhccchhHHhhhhhhccccccccCcceeeCccccccccccccccccCCCccCCC
Q 001983 398 K--EENVASDDDAEIIDLMSRVEHMKRERSILWLREFKEWMDHTSENFVDGSICSGATLMNCEEDNYIKNKRSQPHLAES 475 (986)
Q Consensus 398 ~--ee~~~sd~e~ei~~~~~rlE~lkke~s~~Wl~ef~ewm~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (986)
. .+.+....+....++++++++++++++..|+|+|+|||+....+++++.+....|.++++. +.+.+.....+.+.+
T Consensus 399 ~~~t~a~~f~q~~pe~el~s~~~hl~~~r~vl~lR~~~Ew~~~p~~~~~~~s~~sqpt~seq~~-~tk~rn~p~~e~~g~ 477 (1096)
T KOG1859|consen 399 EINTEAAKFSQEAPEFELISKVEHLKKERSVLWLREFKEWLDSPNEDFMDVSKTSQPTESEQKY-YTKLRNEPLHEGSGT 477 (1096)
T ss_pred cCCCccccccCCCchhhhccchHHHhhhhhHHHHHHHhhhhcCCchhhccccCCCCCcchhcCc-ccccCCCCcccccCC
Confidence 5 4555666677788999999999999999999999999999999999999998899988864 333344444444589
Q ss_pred cccccccccccCCCCcccccccCCccccCcccccccccccccCccccccCcccCCcccccccccccCCccCCCCCccccc
Q 001983 476 SKYVSGSVQASGDESSTNILESENSYADMPTGLHAYQSFDHIGSLGITGGFSLPGIGRMELRQENEKPYLHDGAGAATVQ 555 (986)
Q Consensus 476 s~~~~~~~~~~~~~~~~n~~e~~~s~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (986)
.+|++|+.-..-..+.+|.+|..++|.|+-+|+..+++.+...++-+|.....+.-.-.|+||.+ +.+++||....+
T Consensus 478 p~~tp~sl~~~i~~~p~~n~e~~~~~~~~~~g~~~e~~~e~~et~~et~~e~~~~~~et~ln~~~---~~c~legpp~~~ 554 (1096)
T KOG1859|consen 478 PRYTPGSLHHNISSTPTNNVELASTFDATITGIKSEANDESGETLYETCTEGEETNQETDLNQKH---QLCTLEGPPDRH 554 (1096)
T ss_pred CcCCCCccchhhccCcccchhhcccccccccchhhhcccccccccccccccchhhhhhhhccccc---eeccccCCcccc
Confidence 99999999999999999999999999999999999999999999999988888888888999666 899999999888
Q ss_pred -------ccccccccccccccccccccccCCCccccccccCCCCCCCCCCCCcchhhhhhhhhhhHHHHHhhccce----
Q 001983 556 -------SKSFHQDTFTIQDRRMVENIHESPLTPIDDITDAFSSSARPGSPPHYREDILHRRHNLVAEILQLSAES---- 624 (986)
Q Consensus 556 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~spp~~~~d~l~rr~~~~~e~lq~s~~~---- 624 (986)
+.|.+-.++.+++.+..|||+|+.+ ++.+++..+.+|+||||||+|+|+||+||++||||++||+
T Consensus 555 ~~~~~l~vss~~l~e~~l~~a~~dE~~~m~tl----ea~q~e~~s~~~sSp~~~~kD~L~~r~~lsl~il~ic~d~~~~~ 630 (1096)
T KOG1859|consen 555 EELLRLYVSSSNLQEDPLSDAESDENGNMSTL----EAKQSETGSLTPSSPPHYQKDVLTRRANLSLEILQICADSRSIN 630 (1096)
T ss_pred hhhheeecccccccccchhhhhhhcccceeee----ecccccccccCCCCCCCccccccccchhHHHHHHHhCccccccc
Confidence 8888888999999999999999998 6888889999999999999999999999999999999999
Q ss_pred eeeeeCCCCCcCCccCCCCCCCCcccccccCCcccccccccccccccccccccCCCCCcccc------------cc-cc-
Q 001983 625 YSVVSSDSKTSCSDDDFREYGPSMLEVDQSINPEHEYSSAEVHSLLNLFEEDHNDQPHEIDC------------QR-EN- 690 (986)
Q Consensus 625 ~~~~s~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~~- 690 (986)
|+|+|+|+.++|+++++++.+. .+.+..++...+.+..|++.=--|-..++-+. .+ ++
T Consensus 631 y~v~~~D~~ss~~e~en~ls~~--------~~~~~eq~~~~rdL~~~r~~i~~C~~cgt~F~~eqp~kg~~~kelr~pd~ 702 (1096)
T KOG1859|consen 631 YSVASSDKQSSCSEVENYLSEE--------LESNLEQILLQRDLTENRISIYRCVNCGTQFLIEQPEKGSKIKELRCPDS 702 (1096)
T ss_pred ceeecccccchhhhhhhcccHh--------hhhhHhhhhhhhhhhccccceeeeccccccccccCcccccchhhhcCcch
Confidence 9999999999999999998877 34444466677777777652111111111111 11 22
Q ss_pred cc--ccccCCCCCCCCccccchhhhhHhHhhc--cccceeeeecccccccchhhhhhhhccCCccccCCccccc-ccccc
Q 001983 691 CK--NNGFSAGGNDGEVDSSVNQEAHLLEKNK--RKHTRRVISLLKEQNTVAKTEALQNLNGNLNISEADNVGE-QGKHI 765 (986)
Q Consensus 691 ~~--~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 765 (986)
+| +++|.+|.|.-+-.+.|+|+.+|.+|+- |||++|.+..+++..-+ -++|--|+.- +-+|+.+. +.+-|
T Consensus 703 ~k~~t~~v~~~~~s~~~~~~v~a~~rl~p~~~~~rkp~e~~~ap~~~es~~----ci~kg~~shl-~~ad~s~~~e~~~~ 777 (1096)
T KOG1859|consen 703 RKVYTTNVTSGLHSLKPSGGVNAEPRLSPKMIVERKPVERLVAPINEESSN----CIGKGEASHL-SDADISDSDEDNTI 777 (1096)
T ss_pred hhcccccccccccccCCccceecccccCcchhhhccchhhhcccccccccc----ccCccchhhh-hhcccCCccccccc
Confidence 34 7899999999887899999999999987 99999999988876620 0111111100 00111110 11111
Q ss_pred cccccccccccccccccccccc--ccc-ccccccccccccch-----hhh-HHHhhcccccCCchhhhhccceEE-EEEe
Q 001983 766 FGLNYLLRTSDKKQTRENAVMT--PYI-SGIGSVAKFLSSVK-----EDF-VEDYFNKNVADSKSHETCMQYTVC-WILE 835 (986)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~-----~~~-~~~~f~~~~~~~~~~~~~~~~~~~-~~~~ 835 (986)
. ||+ ...|..-. -.+ |...|...|+.++. ..| ++.||-+..|.+...|+|+.|+.| +|+|
T Consensus 778 r---------Dh~-fw~ns~lp~~c~~~~~~~rs~~FLe~E~~~~~~e~~q~~~~~paklav~S~~~~c~~~vS~~~i~~ 847 (1096)
T KOG1859|consen 778 R---------DHE-FWENSSLPHLCTSHDEVARSKSFLETEFGLLLAEQAQVEELFPAKLAVSSHVETCRSYVSCDVILQ 847 (1096)
T ss_pred c---------ccc-hhccCCCCcccccchhhHHHHHHHHHHhhhhhhhhcccccccchhhccCCCCceeEEEecccchhh
Confidence 1 111 12232111 111 11223456666555 334 889999999999999999999999 9999
Q ss_pred cCCccccee-------EEEEeecCCeeEEEEEeeeecCCcccccccccccchhhhHHhhhccceEEEEEe----------
Q 001983 836 QDFMHRGRE-------VAVLRSSENKFYVLLFGVTVDGTGSILNLLGCHKIEDIREVLIGLGLQVLRVST---------- 898 (986)
Q Consensus 836 ~~~~~~~~e-------~~~l~ss~~k~~~ll~~~~~d~~~~~~~~l~~~~~~~~~~v~~g~glq~~r~~~---------- 898 (986)
.+++|+||| ++||++||||+||+|++|+.|.+++.++++|.|-+.|+|+|.||||+|++++.-
T Consensus 848 ~~sTyeqre~~a~~lq~~Ll~~sqd~l~~gl~g~S~~le~sa~s~~c~~~~~d~q~~~~~l~~~~~~Les~~~~~~~~~~ 927 (1096)
T KOG1859|consen 848 ICSTYEQRETDAPQLQNVLLLSSQDKLYVGLVGVSTDLEKSALSALCSHFISDFQDVSVGLGLQKVLLESEATVFQPYKF 927 (1096)
T ss_pred hhchhhhcCCCchhhhheeecccccceeeeeccccchhhhhhcccccccchhhhhhhhhHHHHHHHHHhccchhhhcccc
Confidence 999999999 999999999999999999999999999999999999999999999999988761
Q ss_pred --------eCCceEEEEeccHHHHHHHh------------------h-----eeeeecccccCCc-----cccchhhHH-
Q 001983 899 --------EMGATYLLMTRSIEKSRQLF------------------C-----TLQIFYLVSANDK-----CSLRSLEQV- 941 (986)
Q Consensus 899 --------~~~~~~~~~~~~~~~~~~~~------------------~-----~~~~~~~~~~~~~-----~~~~s~e~~- 941 (986)
--.--++|.+|+++|+++++ . ++...|.....-+ ||..+.|+|
T Consensus 928 ~~~~~~~i~hrl~~~f~~~~fkE~~e~f~~ra~lveG~~~~~~c~l~~~~~~flp~dDaa~sp~~~~~~a~s~~s~edi~ 1007 (1096)
T KOG1859|consen 928 NYSDFNDIDHRLKLYFYQRKFKEDGELFKWRAKLVEGLVVMSNCKLYLMEAFFLPHDDAAKSPYQVVSVAVSRLSAEDIL 1007 (1096)
T ss_pred ccccccchhhhhhhhhhhhhhhhhhHHHHHHHHHhcCchhhhhhhhhhhHhhcccccccccCcccccchhhhhhhhhhcC
Confidence 23345789999999999995 2 4555666555555 899999999
Q ss_pred ------HHHHHHhhhcCCcc-eeeeeeeeeeEEecCCCCceeE
Q 001983 942 ------QVELFEKQICGGLK-VGIFQYSMVLFWCSEDKGMSHN 977 (986)
Q Consensus 942 ------q~~l~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~ 977 (986)
+|.|||+++|++++ +.+|||+.+.|++....+.|-+
T Consensus 1008 p~~~~~~v~l~e~~~ls~lS~l~~~q~~pl~~q~~~~~~vs~l 1050 (1096)
T KOG1859|consen 1008 PWKLWGGVVLLEHDMLSTLSLLNYLQQIPLPFQSKLNHQVSSL 1050 (1096)
T ss_pred CcCCCCceEEEeccccchHHHHHHHhhCCchhhhhhcccchHH
Confidence 99999999999999 9999999999999888877644
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=2.2e-23 Score=237.77 Aligned_cols=325 Identities=20% Similarity=0.196 Sum_probs=222.1
Q ss_pred cCCeEEEecCCCcccchhhhhccccchhcccCCC---------cccc-ccccccCCCCCCchhhHH-HhcCCCCCcEEEc
Q 001983 26 EGSIVLKLNPAGLHYVQSRLEALRELERLLAGAP---------LDYL-RAYVSDLGDHRALEQLRR-ILKLLTSLKVVSA 94 (986)
Q Consensus 26 ~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~---------l~~l-~l~vLdLs~~~~L~~Lp~-~L~~L~nLk~L~L 94 (986)
.+++.+.++.+.|..||.-......|+.|.+..+ +.++ -+..+||+.|. +.++|. .|..-.++++|+|
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEee
Confidence 3455556666666666653333333444433111 1111 12357788764 344543 5556678999999
Q ss_pred cCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccC-----------
Q 001983 95 LPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD----------- 163 (986)
Q Consensus 95 s~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~----------- 163 (986)
++|.|+......|..|.+|..|.|+.|+|+...+..|.+|+++..+.+..|.|..++++.+..+.++..
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence 999999888899999999999999999999988889988999999999999888877776665544442
Q ss_pred ----CCCCCCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCC--CCcCCcCCCCeecCCCCCcCCccc-ccccc
Q 001983 164 ----SPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAA-FSEVS 235 (986)
Q Consensus 164 ----l~~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L--~~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L 235 (986)
+..+.++++|+|..|++..+.+ ++.+++.|+.|+||+|.|..+ +....+++|++|+|++|+|+.+++ .+..+
T Consensus 261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL 340 (873)
T ss_pred cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH
Confidence 2346788888999898887765 678888888888888888876 477788888888888888888876 34446
Q ss_pred ccceeeccCCCccCCcc--cCCCCCCCCEEEccCCCCCCCch--hhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCC
Q 001983 236 CHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSE--LEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH 311 (986)
Q Consensus 236 ~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~--l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~ 311 (986)
..|+.|+|++|+|..+. .|..+.+|+.|||++|.|+..-+ -..+..|+.|+.|.|.||+|... ..+.|..++.
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I---~krAfsgl~~ 417 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI---PKRAFSGLEA 417 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec---chhhhccCcc
Confidence 77788888888777762 56667777777777776653211 13456677777777777777633 3456666777
Q ss_pred CceeecCCCccC-----------------------hhH--HHHHHHHHHhhcCCCCCCCccCCCCCCC
Q 001983 312 PAKLKVDGKEIS-----------------------TRE--LWERQLIIARRQKRPAGFGFYSPAKGNA 354 (986)
Q Consensus 312 L~lL~LdgN~Is-----------------------~~e--~~~~~~l~~~~~~~p~~~~~~~P~~~~~ 354 (986)
|+.|+|.+|+|. |++ .|-.++++...........|-.|.....
T Consensus 418 LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad 485 (873)
T KOG4194|consen 418 LEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLAD 485 (873)
T ss_pred cceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCccccc
Confidence 777777777664 333 2334555555544445555666655543
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.3e-23 Score=239.84 Aligned_cols=291 Identities=23% Similarity=0.200 Sum_probs=194.0
Q ss_pred cccCCeEEEecCCCcccchhhhhccccchhcccCC-Ccccc--------ccccccCCCCCC-chhhHHHhcCCCCCcEEE
Q 001983 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-PLDYL--------RAYVSDLGDHRA-LEQLRRILKLLTSLKVVS 93 (986)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~-~l~~l--------~l~vLdLs~~~~-L~~Lp~~L~~L~nLk~L~ 93 (986)
-+...+||+|+...|..+|+.|.+|.+|++|...- .+..+ ++..+++.+|+. -..+|..+-.|..|..|+
T Consensus 30 qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred HhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 35567999999999999999999999999986311 00000 000111111111 112344444455555555
Q ss_pred ccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhccc-----------------
Q 001983 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFAS----------------- 156 (986)
Q Consensus 94 Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~----------------- 156 (986)
|++|+++ ..|..+...+++-.|+||+|+|..+....+.+|..++-+.+++|++..++.-...
T Consensus 110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hf 188 (1255)
T KOG0444|consen 110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHF 188 (1255)
T ss_pred cchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHH
Confidence 5555554 3444444445555555555555443333444444444444444444433321100
Q ss_pred ---------------------cccccc-CCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCC-CcCCcC
Q 001983 157 ---------------------RIVEIK-DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCV 213 (986)
Q Consensus 157 ---------------------~l~~L~-~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~-~L~~L~ 213 (986)
.+..++ .+..+.+|..+++|.|.|..+|+.+.++++|+.|+||+|+|+.+. ......
T Consensus 189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~ 268 (1255)
T KOG0444|consen 189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWE 268 (1255)
T ss_pred HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHh
Confidence 000111 122456788888888888888888888888888888888888876 566778
Q ss_pred CCCeecCCCCCcCCccccccccccceeeccCCCccCC--cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEe
Q 001983 214 NLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT--LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWL 290 (986)
Q Consensus 214 ~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~--L~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~L 290 (986)
+|++|+||.|+++.+|.....+++|+.|.+.+|+++. || +++.+..|+.+.+++|.+.-.| +.+..++.|+.|.|
T Consensus 269 ~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP--EglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 269 NLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP--EGLCRCVKLQKLKL 346 (1255)
T ss_pred hhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc--hhhhhhHHHHHhcc
Confidence 8888888888888888877778888888888887754 55 7888889999999999988887 67889999999999
Q ss_pred cCCCCCCCcccchHHhhhcCCCceeecCCCc
Q 001983 291 EGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (986)
Q Consensus 291 s~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~ 321 (986)
+.|.+...| ..+..++.+..|+|..||
T Consensus 347 ~~NrLiTLP----eaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 347 DHNRLITLP----EAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred cccceeech----hhhhhcCCcceeeccCCc
Confidence 999987665 456678899999999885
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=3e-20 Score=235.04 Aligned_cols=241 Identities=21% Similarity=0.181 Sum_probs=112.4
Q ss_pred cccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCC
Q 001983 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (986)
Q Consensus 67 vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~ 146 (986)
.+++++|+..+.+|. ..+++|++|+|++|.+.+.+|..|..+++|++|+|++|.+.+.+|..+.+++++..+.+.+|.
T Consensus 122 ~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 122 YLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred EEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence 445555544444443 335555555555555555555555555555555555555555555555555555555454444
Q ss_pred CccchhhcccccccccCCCCCCCccEEEccCCccc-cchhhhcCCCCCCEEECCCCCCCC-CC-CcCCcCCCCeecCCCC
Q 001983 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRKCVNLKHLDLGFN 223 (986)
Q Consensus 147 L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt-~LP~sL~~L~~L~~LdLS~N~Ls~-L~-~L~~L~~L~~LdLS~N 223 (986)
+... ++.. +..+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|
T Consensus 200 l~~~---~p~~------l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 200 LVGQ---IPRE------LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred CcCc---CChH------HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 3211 0100 112344555555555544 444445555555555555555443 22 4444555555555555
Q ss_pred CcCC-ccccccccccceeeccCCCccCCc-c-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001983 224 NLRS-IAAFSEVSCHIVKLVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (986)
Q Consensus 224 ~Ls~-L~~l~~~L~sL~~L~Ls~N~Ls~L-~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~ 300 (986)
.+.+ +|.....+++|+.|+|++|.+... + .+..+++|+.|+|++|.+....+ ..+..+++|+.|+|++|.+....
T Consensus 271 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~- 348 (968)
T PLN00113 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNKFSGEI- 348 (968)
T ss_pred eeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC-hhHhcCCCCCEEECcCCCCcCcC-
Confidence 5443 222333344555555555544432 2 34444555555555554443221 33444555555555555444221
Q ss_pred cchHHhhhcCCCceeecCCCcc
Q 001983 301 YRAQVFSYFAHPAKLKVDGKEI 322 (986)
Q Consensus 301 ~r~~~~~~l~~L~lL~LdgN~I 322 (986)
+..+..++.|+.++|.+|.+
T Consensus 349 --p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 349 --PKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred --ChHHhCCCCCcEEECCCCee
Confidence 12233344444455544444
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=8.2e-22 Score=225.05 Aligned_cols=253 Identities=22% Similarity=0.218 Sum_probs=164.3
Q ss_pred ccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccC
Q 001983 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (986)
Q Consensus 66 ~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N 145 (986)
..+|+++|+.-..=+..|.++++|++++|..|.++ .+|.......+|+.|+|.+|.|+......+..++.+..++++.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 34777776655444667788888888888888876 56665556667888888888888877778888888777888888
Q ss_pred CCccchhhccc-------------cccccc--CCCCCCCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCC--
Q 001983 146 STNALRHVFAS-------------RIVEIK--DSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD-- 207 (986)
Q Consensus 146 ~L~~L~~l~~~-------------~l~~L~--~l~~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~-- 207 (986)
.|..++.-.+. +|+.+. .+..+.+|..|.|+.|+|+.+|. .|.+++.|+.|+|..|+|..+.
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 77666543222 222221 23345566666666676666665 5555777777777777666553
Q ss_pred CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCC
Q 001983 208 NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPY 284 (986)
Q Consensus 208 ~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~ 284 (986)
.|.+|++|+.|.|..|.|..+.. .+..+.++++|+|+.|+++.+ .++.++++|+.|+|++|.|..+.. ..+...++
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~-d~Wsftqk 318 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI-DSWSFTQK 318 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec-chhhhccc
Confidence 56666666666666666666543 344456666666666666665 356666677777777777666643 45566667
Q ss_pred CcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 285 LLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 285 L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
|+.|+|+.|.|+..+ ...|..+..|+.|.|..|.|+
T Consensus 319 L~~LdLs~N~i~~l~---~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 319 LKELDLSSNRITRLD---EGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred ceeEeccccccccCC---hhHHHHHHHhhhhcccccchH
Confidence 777777777776443 345555566666666666665
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=4.1e-20 Score=233.84 Aligned_cols=253 Identities=20% Similarity=0.152 Sum_probs=117.0
Q ss_pred cccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCC
Q 001983 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (986)
Q Consensus 67 vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~ 146 (986)
.+++++|...+.+|..+.++++|++|+|++|.+.+.+|..|..+++|+.|+|++|.+++.+|..+..++++..+.+.+|.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 44555555555555556666666666666666665556666666666666666666665556556655555555555554
Q ss_pred Ccc-chhhccc------------ccc-cc-cCCCCCCCccEEEccCCccc-cchhhhcCCCCCCEEECCCCCCCCC-C-C
Q 001983 147 TNA-LRHVFAS------------RIV-EI-KDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAKV-D-N 208 (986)
Q Consensus 147 L~~-L~~l~~~------------~l~-~L-~~l~~L~sL~~LdLS~N~Lt-~LP~sL~~L~~L~~LdLS~N~Ls~L-~-~ 208 (986)
+.. ++..+.. .+. .+ ..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+... + .
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 321 1111000 000 00 00112334444444444444 3444444444444444444444431 1 3
Q ss_pred cCCcCCCCeecCCCCCcCC-ccccccccccceeeccCCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCC
Q 001983 209 LRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYL 285 (986)
Q Consensus 209 L~~L~~L~~LdLS~N~Ls~-L~~l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L 285 (986)
+..+++|+.|+|++|.+.+ ++.....+++|+.|+|++|+++.. ..+..+++|+.|++++|.+....+ ..+..+++|
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~~~~L 406 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP-KSLGACRSL 406 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC-HHHhCCCCC
Confidence 4444444445554444442 222333334444555554444431 133344444444444444443221 334445555
Q ss_pred cEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 286 LNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 286 ~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
+.|+|++|+++... +..+..++.++.++|.+|.+.
T Consensus 407 ~~L~L~~n~l~~~~---p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 407 RRVRLQDNSFSGEL---PSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred CEEECcCCEeeeEC---ChhHhcCCCCCEEECcCCccc
Confidence 55555555554221 123344455555555555443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1.8e-20 Score=207.22 Aligned_cols=243 Identities=27% Similarity=0.309 Sum_probs=201.5
Q ss_pred cccCCeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCC
Q 001983 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPT 103 (986)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~l 103 (986)
-+..+.+|.++.+.+..+|..+..+.++..+. .+. +.+.++|+.+..++.|+.|+.++|.+. .+
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~--------------vs~-n~ls~lp~~i~s~~~l~~l~~s~n~~~-el 129 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLN--------------VSH-NKLSELPEQIGSLISLVKLDCSSNELK-EL 129 (565)
T ss_pred cccceeEEEeccchhhhCCHHHHHHHHHHHhh--------------ccc-chHhhccHHHhhhhhhhhhhcccccee-ec
Confidence 35556778888888888888777776655553 233 346678888888999999999999887 56
Q ss_pred CcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccc
Q 001983 104 PLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM 183 (986)
Q Consensus 104 P~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~L 183 (986)
|+.++.+..|+.|+..+|+++. .|.++..+.++..+++.+|.+..++.... +|+.|++||+..|-++.+
T Consensus 130 ~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i----------~m~~L~~ld~~~N~L~tl 198 (565)
T KOG0472|consen 130 PDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHI----------AMKRLKHLDCNSNLLETL 198 (565)
T ss_pred CchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHH----------HHHHHHhcccchhhhhcC
Confidence 6778888899999999999877 67788888888888888887776665432 366899999999999999
Q ss_pred hhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccc-cccccceeeccCCCccCCcc-cCCCCCCCC
Q 001983 184 DESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFS-EVSCHIVKLVLRNNALTTLR-GIENLKSLE 261 (986)
Q Consensus 184 P~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~-~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~ 261 (986)
|+.++.+.+|..|+|.+|+|..+|.|.++..|..|.++.|.|..+|... ..+++|..|+|..|+++.+| .+-.+.+|.
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE 278 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999988744 46889999999999999986 677788899
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCC
Q 001983 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (986)
Q Consensus 262 ~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt 296 (986)
.||+++|.|+.+| ..++++ +|+.|-+.|||+.
T Consensus 279 rLDlSNN~is~Lp--~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 279 RLDLSNNDISSLP--YSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hhcccCCccccCC--cccccc-eeeehhhcCCchH
Confidence 9999999999998 578888 8999999999985
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=2.9e-20 Score=212.69 Aligned_cols=259 Identities=21% Similarity=0.216 Sum_probs=202.5
Q ss_pred ccCCeEEEecCCCcccchhhhhccccchhcccCC----------CccccccccccCCCCCCchhhHHHhcCCCCCcEEEc
Q 001983 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGA----------PLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSA 94 (986)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~----------~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~L 94 (986)
+..+.+|+|+++.|..+|..|..-+++-.|.+.. ..+..++.-+||++|+ ++.+|+.++.|.+|++|.|
T Consensus 102 l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred cccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhc
Confidence 3446788888888888888887766655544311 1111122345666543 6667777777777777777
Q ss_pred cCCCCCCCCCcCCCCCCCccEEEeeCCCCC-ccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEE
Q 001983 95 LPPPARDPTPLSLLPFCRLKVLELRGCDLS-TSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFV 173 (986)
Q Consensus 95 s~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt-~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~L 173 (986)
++|++...--..+-.+++|+.|.+++.+-+ .-+|..+..|.++..+.++.|++..++..+. ++++|+.|
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly----------~l~~LrrL 250 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLY----------KLRNLRRL 250 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHh----------hhhhhhee
Confidence 777765333334445667777777776544 3467778888888888888888777766543 36799999
Q ss_pred EccCCccccchhhhcCCCCCCEEECCCCCCCCCC-CcCCcCCCCeecCCCCCcC--CccccccccccceeeccCCCccCC
Q 001983 174 SCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLR--SIAAFSEVSCHIVKLVLRNNALTT 250 (986)
Q Consensus 174 dLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS~N~Ls--~L~~l~~~L~sL~~L~Ls~N~Ls~ 250 (986)
+||+|+|+.+......+.+|++|+||+|+++.+| .+.+++.|+.|.+.+|+++ +||.-++.+..|+.+..++|.+.-
T Consensus 251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl 330 (1255)
T KOG0444|consen 251 NLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL 330 (1255)
T ss_pred ccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc
Confidence 9999999988778888999999999999999998 8999999999999999875 788888888999999999999998
Q ss_pred cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCC
Q 001983 251 LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (986)
Q Consensus 251 L~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt 296 (986)
+| ++..|+.|+.|.|++|++-.+| +.+.-++.|+.|+|..||=.
T Consensus 331 VPEglcRC~kL~kL~L~~NrLiTLP--eaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDHNRLITLP--EAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred CchhhhhhHHHHHhcccccceeech--hhhhhcCCcceeeccCCcCc
Confidence 86 8999999999999999999998 67888999999999999843
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.70 E-value=5.9e-18 Score=187.45 Aligned_cols=294 Identities=17% Similarity=0.125 Sum_probs=203.5
Q ss_pred cCCCccccccc---cccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHH
Q 001983 56 AGAPLDYLRAY---VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLL 132 (986)
Q Consensus 56 l~~~l~~l~l~---vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~ 132 (986)
..||..|.|-. ..-....+.+.++|..+ -+.-..|+|..|.|+.+.|.+|..+++|+.|||++|.|+.+.|.+|.
T Consensus 35 ~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~ 112 (498)
T KOG4237|consen 35 SACPAPCTCSDVEGGIVDCRGKGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK 112 (498)
T ss_pred ccCCCCcccCCCCCceEEccCCCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhh
Confidence 34555555554 22233455677787643 23678889999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcc-CCCccchhhccccccccc---------------CCCCCCCccEEEccCCccccchh-hhcCCCCCCE
Q 001983 133 ELRHTLEKIICH-NSTNALRHVFASRIVEIK---------------DSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVET 195 (986)
Q Consensus 133 ~L~~LL~LLL~~-N~L~~L~~l~~~~l~~L~---------------~l~~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~ 195 (986)
++..+.++++.+ |+|..++...++.+..+. .+..+++|..|.+..|.+..++. .|..+.+++.
T Consensus 113 GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 113 GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKT 192 (498)
T ss_pred hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccch
Confidence 999999998777 788888876655332111 01234455555555555555555 4555555555
Q ss_pred EECCCCCCCC---C----------C-CcCCcCCCCeecCCCCCcC-------------------------C-ccc-cccc
Q 001983 196 LDLSRNKFAK---V----------D-NLRKCVNLKHLDLGFNNLR-------------------------S-IAA-FSEV 234 (986)
Q Consensus 196 LdLS~N~Ls~---L----------~-~L~~L~~L~~LdLS~N~Ls-------------------------~-L~~-l~~~ 234 (986)
+.+..|.+-. + + .++......-..|.++++. . .|. .+..
T Consensus 193 lhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~ 272 (498)
T KOG4237|consen 193 LHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK 272 (498)
T ss_pred HhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh
Confidence 5555554211 0 0 1111111111111111111 1 111 2344
Q ss_pred cccceeeccCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCC
Q 001983 235 SCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHP 312 (986)
Q Consensus 235 L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L 312 (986)
+++|+.|+|++|+|+.|. +|..+..|+.|.|..|+|..+.. ..|.++..|+.|+|.+|+|++.. +..|..+..+
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~---~~aF~~~~~l 348 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS-GMFQGLSGLKTLSLYDNQITTVA---PGAFQTLFSL 348 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH-HhhhccccceeeeecCCeeEEEe---ccccccccee
Confidence 689999999999999983 89999999999999999998865 67889999999999999999775 3567778889
Q ss_pred ceeecCCCccChhHHHHHHHHHHhhcCCCCCCCccCCCCCCCC
Q 001983 313 AKLKVDGKEISTRELWERQLIIARRQKRPAGFGFYSPAKGNAD 355 (986)
Q Consensus 313 ~lL~LdgN~Is~~e~~~~~~l~~~~~~~p~~~~~~~P~~~~~~ 355 (986)
..+.|-+||+.|.++..+..-+.+........+|..|......
T Consensus 349 ~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~ 391 (498)
T KOG4237|consen 349 STLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQI 391 (498)
T ss_pred eeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccc
Confidence 9999999999999987776665555556667778777666553
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=2.5e-19 Score=198.28 Aligned_cols=263 Identities=20% Similarity=0.206 Sum_probs=200.1
Q ss_pred eEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCC
Q 001983 29 IVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLL 108 (986)
Q Consensus 29 ~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~ 108 (986)
+.|.+..+.+..+.+.+.+|.-| .++++.++ .+.++|+.++.+..++.|+.++|.+. .+|..+.
T Consensus 48 ~~lils~N~l~~l~~dl~nL~~l--------------~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~ 111 (565)
T KOG0472|consen 48 QKLILSHNDLEVLREDLKNLACL--------------TVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIG 111 (565)
T ss_pred hhhhhccCchhhccHhhhcccce--------------eEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHh-hccHHHh
Confidence 45555555555555544444322 23344443 34556777777777777777777776 5666777
Q ss_pred CCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccchhhhc
Q 001983 109 PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQ 188 (986)
Q Consensus 109 ~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~sL~ 188 (986)
.+.+|..|++++|.+.. +|..++.+..+..+...+|++..+++.++. +.+|..|++.+|++..+|+..-
T Consensus 112 s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~slp~~~~~----------~~~l~~l~~~~n~l~~l~~~~i 180 (565)
T KOG0472|consen 112 SLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQISSLPEDMVN----------LSKLSKLDLEGNKLKALPENHI 180 (565)
T ss_pred hhhhhhhhhccccceee-cCchHHHHhhhhhhhccccccccCchHHHH----------HHHHHHhhccccchhhCCHHHH
Confidence 77777777777777765 555667776666666777777776665433 4578889999999998888766
Q ss_pred CCCCCCEEECCCCCCCCCC-CcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcc--cCCCCCCCCEEEc
Q 001983 189 LLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDI 265 (986)
Q Consensus 189 ~L~~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdL 265 (986)
.|+.|+.|+...|-+..+| .++.+.+|..|+|..|+|..+|. +..+..|..|+++.|+|+.+| ...++++|..|||
T Consensus 181 ~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe-f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE-FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC-CCccHHHHHHHhcccHHHhhHHHHhcccccceeeec
Confidence 6999999999999999886 89999999999999999999985 445688999999999999986 5678999999999
Q ss_pred cCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChhH
Q 001983 266 SYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (986)
Q Consensus 266 S~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e 326 (986)
.+|+++..| ..+.-+.+|.+||+++|-|+..+ ..+..+ .++.+.+.|||+.+..
T Consensus 260 RdNklke~P--de~clLrsL~rLDlSNN~is~Lp----~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 260 RDNKLKEVP--DEICLLRSLERLDLSNNDISSLP----YSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred cccccccCc--hHHHHhhhhhhhcccCCccccCC----cccccc-eeeehhhcCCchHHHH
Confidence 999999998 56778889999999999998775 334455 7889999999997653
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=1.6e-17 Score=198.64 Aligned_cols=268 Identities=22% Similarity=0.201 Sum_probs=198.1
Q ss_pred CCeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcC
Q 001983 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLS 106 (986)
Q Consensus 27 ~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~s 106 (986)
.++.++++.+.+..+|+.+..+.+|+.+..+ .+.+..+|..+....+|+.|....|.+. -+|..
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n---------------~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~ 305 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNAN---------------HNRLVALPLRISRITSLVSLSAAYNELE-YIPPF 305 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEeccc---------------chhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCc
Confidence 3456666666666666666666665555432 2334667777777777888887777776 45666
Q ss_pred CCCCCCccEEEeeCCCCCccchhhHHhhhhhhh-hhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccc-cch
Q 001983 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLE-KIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMD 184 (986)
Q Consensus 107 f~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~-LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt-~LP 184 (986)
+.+++.|++|+|..|+|....+..+.-+...+. +..+.|.+..++..- -..++.|+.|.+.+|.|+ ..-
T Consensus 306 le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~---------e~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE---------ENNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccccc---------chhhHHHHHHHHhcCcccccch
Confidence 778999999999999997744433333222122 223344444443211 123567999999999999 444
Q ss_pred hhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcccCCCCCCCCE
Q 001983 185 ESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEG 262 (986)
Q Consensus 185 ~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~ 262 (986)
+.+-++++|+.|+|++|+|..+| .+.++..|+.|+||+|+|+.++.....++.|++|...+|+|..+|.+..++.|+.
T Consensus 377 p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~ 456 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKV 456 (1081)
T ss_pred hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceE
Confidence 56788999999999999999987 6899999999999999999999877788999999999999999999999999999
Q ss_pred EEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 263 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 263 LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
+||+.|.|+.... ......++|++|+|+||.... +....+..++.+...+++-|+.+
T Consensus 457 lDlS~N~L~~~~l-~~~~p~p~LkyLdlSGN~~l~---~d~~~l~~l~~l~~~~i~~~~~~ 513 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTL-PEALPSPNLKYLDLSGNTRLV---FDHKTLKVLKSLSQMDITLNNTP 513 (1081)
T ss_pred Eecccchhhhhhh-hhhCCCcccceeeccCCcccc---cchhhhHHhhhhhheecccCCCC
Confidence 9999999997643 223334899999999999642 33456677777888887777444
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=4.8e-16 Score=190.34 Aligned_cols=245 Identities=23% Similarity=0.222 Sum_probs=150.8
Q ss_pred CCeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcC
Q 001983 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLS 106 (986)
Q Consensus 27 ~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~s 106 (986)
+..+|+++.+.|..+|..+.. .|+.| ++.+| .+..+|. .+++|++|+|++|+|+. +|..
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~~--~L~~L--------------~L~~N-~Lt~LP~---lp~~Lk~LdLs~N~Lts-LP~l 260 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLPA--HITTL--------------VIPDN-NLTSLPA---LPPELRTLEVSGNQLTS-LPVL 260 (788)
T ss_pred CCcEEEcCCCCCCcCCcchhc--CCCEE--------------EccCC-cCCCCCC---CCCCCcEEEecCCccCc-ccCc
Confidence 356899999999998876542 33333 33332 3444554 25788888888888874 3432
Q ss_pred CCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccchhh
Q 001983 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDES 186 (986)
Q Consensus 107 f~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~s 186 (986)
.++|+.|+|++|.|+. +|..+.+ +..+.+.+|.+..++.. .++|+.|+|++|+|+.+|..
T Consensus 261 ---p~sL~~L~Ls~N~L~~-Lp~lp~~---L~~L~Ls~N~Lt~LP~~-------------p~~L~~LdLS~N~L~~Lp~l 320 (788)
T PRK15387 261 ---PPGLLELSIFSNPLTH-LPALPSG---LCKLWIFGNQLTSLPVL-------------PPGLQELSVSDNQLASLPAL 320 (788)
T ss_pred ---ccccceeeccCCchhh-hhhchhh---cCEEECcCCcccccccc-------------ccccceeECCCCccccCCCC
Confidence 3677788888887765 3333222 23344566665554432 12455555555555544331
Q ss_pred hc-----------------CCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccC
Q 001983 187 LQ-----------------LLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 249 (986)
Q Consensus 187 L~-----------------~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls 249 (986)
.. ...+|+.|+|++|+|+.+|.+ ..+|+.|++++|.|+.+|... .+|+.|+|++|.|+
T Consensus 321 p~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~N~Lt 395 (788)
T PRK15387 321 PSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLT 395 (788)
T ss_pred cccccccccccCccccccccccccceEecCCCccCCCCCC--CcccceehhhccccccCcccc---cccceEEecCCccc
Confidence 10 113566666666666665543 245666666666666655432 45777777777777
Q ss_pred CcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChhHHH
Q 001983 250 TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELW 328 (986)
Q Consensus 250 ~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~~ 328 (986)
.+|.+ .++|+.|+|++|.|+.+|.. ..+|+.|+|++|.|+..| ..+..++.+..++|.+|+++.....
T Consensus 396 ~LP~l--~s~L~~LdLS~N~LssIP~l-----~~~L~~L~Ls~NqLt~LP----~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 396 SLPVL--PSELKELMVSGNRLTSLPML-----PSGLLSLSVYRNQLTRLP----ESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCCCc--ccCCCEEEccCCcCCCCCcc-----hhhhhhhhhccCcccccC----hHHhhccCCCeEECCCCCCCchHHH
Confidence 76643 35677888888888777631 246777888888887544 3456778899999999999865443
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=2.7e-16 Score=192.95 Aligned_cols=263 Identities=19% Similarity=0.203 Sum_probs=193.8
Q ss_pred cccCCeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCC
Q 001983 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPT 103 (986)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~l 103 (986)
+......|+++...+..+|..+. ..| ..+++++| .+..+|..+ .++|+.|+|++|.++ .+
T Consensus 176 l~~~~~~L~L~~~~LtsLP~~Ip--~~L--------------~~L~Ls~N-~LtsLP~~l--~~nL~~L~Ls~N~Lt-sL 235 (754)
T PRK15370 176 LKNNKTELRLKILGLTTIPACIP--EQI--------------TTLILDNN-ELKSLPENL--QGNIKTLYANSNQLT-SI 235 (754)
T ss_pred cccCceEEEeCCCCcCcCCcccc--cCC--------------cEEEecCC-CCCcCChhh--ccCCCEEECCCCccc-cC
Confidence 33455789999988888886442 122 23456655 355677755 369999999999988 45
Q ss_pred CcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccc
Q 001983 104 PLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM 183 (986)
Q Consensus 104 P~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~L 183 (986)
|..+. ++|+.|+|++|.+.. +|..+. ..+..+.+.+|++..++..++ ++|+.|++++|+|+.+
T Consensus 236 P~~l~--~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~LP~~l~------------~sL~~L~Ls~N~Lt~L 298 (754)
T PRK15370 236 PATLP--DTIQEMELSINRITE-LPERLP--SALQSLDLFHNKISCLPENLP------------EELRYLSVYDNSIRTL 298 (754)
T ss_pred Chhhh--ccccEEECcCCccCc-CChhHh--CCCCEEECcCCccCccccccC------------CCCcEEECCCCccccC
Confidence 65543 589999999999985 565554 244555677777766654321 3799999999999998
Q ss_pred hhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcccCCCCCCCCEE
Q 001983 184 DESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGL 263 (986)
Q Consensus 184 P~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~L 263 (986)
|..+. ++|+.|++++|.++.+|.. ..++|+.|++++|.++.+|... +++|+.|+|++|+|+.+|. .-.++|+.|
T Consensus 299 P~~lp--~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~-~lp~~L~~L 372 (754)
T PRK15370 299 PAHLP--SGITHLNVQSNSLTALPET-LPPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPE-TLPPTITTL 372 (754)
T ss_pred cccch--hhHHHHHhcCCccccCCcc-ccccceeccccCCccccCChhh--cCcccEEECCCCCCCcCCh-hhcCCcCEE
Confidence 87553 5789999999999988631 1368999999999999987643 3789999999999998863 113689999
Q ss_pred EccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChhHHHHHHHH
Q 001983 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLI 333 (986)
Q Consensus 264 dLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~~~~~~l 333 (986)
+|++|.|+.+|. .+. ..|+.|++++|.|...+......+..++.+..+.|++|+++...+...+.+
T Consensus 373 dLs~N~Lt~LP~--~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~~L 438 (754)
T PRK15370 373 DVSRNALTNLPE--NLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRL 438 (754)
T ss_pred ECCCCcCCCCCH--hHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHHHHh
Confidence 999999999884 232 368999999999987664333444455778899999999997655544333
No 14
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.65 E-value=4.9e-17 Score=174.73 Aligned_cols=305 Identities=27% Similarity=0.375 Sum_probs=222.8
Q ss_pred HHHHHHhhcCcccccCCeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcE
Q 001983 12 KLVKFVEQQAGPLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKV 91 (986)
Q Consensus 12 ~lv~~l~~~~~~lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~ 91 (986)
.+.+.+...++.++.+-+...+++..+..+.+++.. +||... +-++ -..+...+.-+..|++
T Consensus 125 ~la~~~~e~g~~ll~~~~~~~~~~l~~yaise~l~~---------~~p~~~------~~~~---k~d~~hildf~~~l~~ 186 (490)
T KOG1259|consen 125 DLAKLFNESGDALLSSKKEYNLSALEVYAISERLSL---------PCPPSL------DRGG---KYDFSHVLDFCTQLVA 186 (490)
T ss_pred HHHHHHHhhhHHHhccCceecccchhhhhHHHHhcC---------CCCCcc------CCCC---ccchHHHHHhhhheeE
Confidence 445556667888888888999999998888876543 333111 1111 1112233334556666
Q ss_pred EEccC--------CCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCC-Cccchhhccccc----
Q 001983 92 VSALP--------PPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVFASRI---- 158 (986)
Q Consensus 92 L~Ls~--------N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~-L~~L~~l~~~~l---- 158 (986)
|-.++ |-+...+|-.+..+.+|..+.++.|.-..+. ++..++..+..+..+|. +...+.+.+...
T Consensus 187 l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~--~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~ 264 (490)
T KOG1259|consen 187 LVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV--DIELLKPTLQTICVHNTTIQDVPSLLPETILADP 264 (490)
T ss_pred EEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee--ceeecCchhheeeeecccccccccccchhhhcCc
Confidence 66654 2233445556666788888888887533211 11122222222222332 112222211100
Q ss_pred ----------ccccCCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCc
Q 001983 159 ----------VEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSI 228 (986)
Q Consensus 159 ----------~~L~~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L 228 (986)
..+.....|..|+.|||++|.|+.+.+++.-+|.++.|++|+|.|..+..+..+++|+.|||++|.++.+
T Consensus 265 ~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~ 344 (490)
T KOG1259|consen 265 SGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAEC 344 (490)
T ss_pred cCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhh
Confidence 0112245788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceeeccCCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhh
Q 001983 229 AAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSY 308 (986)
Q Consensus 229 ~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~ 308 (986)
..+...+.++++|.|+.|.|.++.++..+-+|..||+++|+|..+.....++++|.|+.|.|.+||+...++||..++..
T Consensus 345 ~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYRTKVLa~ 424 (490)
T KOG1259|consen 345 VGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYRTKVLAR 424 (490)
T ss_pred hhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHHHHHHHH
Confidence 98888889999999999999999999999999999999999999998889999999999999999999999999999887
Q ss_pred cC-CCceeecCCCccChhHHHHHHHHHHh
Q 001983 309 FA-HPAKLKVDGKEISTRELWERQLIIAR 336 (986)
Q Consensus 309 l~-~L~lL~LdgN~Is~~e~~~~~~l~~~ 336 (986)
|- .-..+.||+.+-...+.....++.+-
T Consensus 425 FGERaSE~~LD~~~~~~~ELDTV~Vl~Al 453 (490)
T KOG1259|consen 425 FGERASEISLDNEPGNQQELDTVLVLSAL 453 (490)
T ss_pred HhhhhhheecCCCCcchhhhhHHHHHHHH
Confidence 74 45788999999888887766655443
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=5e-17 Score=194.53 Aligned_cols=253 Identities=22% Similarity=0.216 Sum_probs=168.1
Q ss_pred CeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCC
Q 001983 28 SIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSL 107 (986)
Q Consensus 28 l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf 107 (986)
++.|+++++.+...|..+..+..|+.+...+ +.+..+|..+.++.+|++|+|.+|.+. .+|..+
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~---------------n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~ 110 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSR---------------NYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASI 110 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccch---------------hhHhhCchhhhhhhcchhheeccchhh-cCchhH
Confidence 7899999999999999999998888886542 233444555555555666665555443 455555
Q ss_pred CCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhc-----------------------------------------cCC
Q 001983 108 LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIIC-----------------------------------------HNS 146 (986)
Q Consensus 108 ~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~-----------------------------------------~N~ 146 (986)
..+.+|++|+++.|.+.. .|..+..+..+.+...+ +|.
T Consensus 111 ~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~ 189 (1081)
T KOG0618|consen 111 SELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNE 189 (1081)
T ss_pred HhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccch
Confidence 555666666666655543 33333333333333333 332
Q ss_pred Cccchhhccc------------------------------ccccccCCCCCCCccEEEccCCccccchhhhcCCCCCCEE
Q 001983 147 TNALRHVFAS------------------------------RIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETL 196 (986)
Q Consensus 147 L~~L~~l~~~------------------------------~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~L 196 (986)
+..+.-.... .+..+-..+.-.+|++++++.|+++.+|+.+..+++|+.|
T Consensus 190 ~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l 269 (1081)
T KOG0618|consen 190 MEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEAL 269 (1081)
T ss_pred hhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEe
Confidence 2200000000 0000111123357889999999999999889999999999
Q ss_pred ECCCCCCCCC-----------------------C-CcCCcCCCCeecCCCCCcCCcccccc-------------------
Q 001983 197 DLSRNKFAKV-----------------------D-NLRKCVNLKHLDLGFNNLRSIAAFSE------------------- 233 (986)
Q Consensus 197 dLS~N~Ls~L-----------------------~-~L~~L~~L~~LdLS~N~Ls~L~~l~~------------------- 233 (986)
.+.+|+|..+ + .+..++.|++|+|..|+|..+|..+.
T Consensus 270 ~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~ 349 (1081)
T KOG0618|consen 270 NANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST 349 (1081)
T ss_pred cccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc
Confidence 9988887643 2 34457788888888888877664211
Q ss_pred -------ccccceeeccCCCccCC--cccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001983 234 -------VSCHIVKLVLRNNALTT--LRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (986)
Q Consensus 234 -------~L~sL~~L~Ls~N~Ls~--L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~ 298 (986)
.++.|+.|+|.+|.|++ +|.+.+.++|+.|+|++|+|..+|. ..+.++..|+.|+|+||.++..
T Consensus 350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa-s~~~kle~LeeL~LSGNkL~~L 422 (1081)
T KOG0618|consen 350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA-SKLRKLEELEELNLSGNKLTTL 422 (1081)
T ss_pred cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH-HHHhchHHhHHHhcccchhhhh
Confidence 12467778888888877 5788888999999999999999987 6788999999999999988754
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=1.4e-15 Score=186.21 Aligned_cols=234 Identities=21% Similarity=0.156 Sum_probs=170.9
Q ss_pred cCCeEEEecCCCcccchhhhhccccchhcccCCCccc-----cccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCC
Q 001983 26 EGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDY-----LRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPAR 100 (986)
Q Consensus 26 ~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~-----l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls 100 (986)
..++.|.+..+.|..+|..+..|+.|..-. +.+.. -.+..+++.+|. +..+|.. +++|+.|+|++|.++
T Consensus 222 ~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~--N~LtsLP~lp~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPALPPELRTLEVSG--NQLTSLPVLPPGLLELSIFSNP-LTHLPAL---PSGLCKLWIFGNQLT 295 (788)
T ss_pred cCCCEEEccCCcCCCCCCCCCCCcEEEecC--CccCcccCcccccceeeccCCc-hhhhhhc---hhhcCEEECcCCccc
Confidence 356888999999998887555444333211 11111 123345666654 5556653 356888888888887
Q ss_pred CCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCcc
Q 001983 101 DPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRL 180 (986)
Q Consensus 101 ~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~L 180 (986)
. +|. .+++|+.|+|++|.|++ +|..... +..+.+.+|.+..++.+ ..+|+.|+|++|+|
T Consensus 296 ~-LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~---L~~L~Ls~N~L~~LP~l-------------p~~Lq~LdLS~N~L 354 (788)
T PRK15387 296 S-LPV---LPPGLQELSVSDNQLAS-LPALPSE---LCKLWAYNNQLTSLPTL-------------PSGLQELSVSDNQL 354 (788)
T ss_pred c-ccc---cccccceeECCCCcccc-CCCCccc---ccccccccCcccccccc-------------ccccceEecCCCcc
Confidence 4 443 24789999999999887 3432222 23344566665554431 13799999999999
Q ss_pred ccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcccCCCCCCC
Q 001983 181 VIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSL 260 (986)
Q Consensus 181 t~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL 260 (986)
+.+|.. .++|+.|++++|+|+.+|.+ ..+|+.|+|++|.|+.+|... ++|+.|+|++|+|+.+|.+ +.+|
T Consensus 355 s~LP~l---p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~LssIP~l--~~~L 424 (788)
T PRK15387 355 ASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPML--PSGL 424 (788)
T ss_pred CCCCCC---CcccceehhhccccccCccc--ccccceEEecCCcccCCCCcc---cCCCEEEccCCcCCCCCcc--hhhh
Confidence 999864 45788999999999998854 367999999999999888643 6799999999999998754 4578
Q ss_pred CEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001983 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (986)
Q Consensus 261 ~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~ 298 (986)
+.|+|++|.|+.+| ..+..+++|+.|+|++|+|++.
T Consensus 425 ~~L~Ls~NqLt~LP--~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 425 LSLSVYRNQLTRLP--ESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhhhccCcccccC--hHHhhccCCCeEECCCCCCCch
Confidence 99999999999998 5688999999999999999855
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=3e-16 Score=157.94 Aligned_cols=163 Identities=24% Similarity=0.337 Sum_probs=102.9
Q ss_pred chhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcc
Q 001983 76 LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFA 155 (986)
Q Consensus 76 L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~ 155 (986)
+.++|. +-.+.+.+.|.|++|+++ ..|+.+..+.+|+.|++++|+|+. +|..+..+
T Consensus 23 f~~~~g-Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl--------------------- 78 (264)
T KOG0617|consen 23 FEELPG-LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSL--------------------- 78 (264)
T ss_pred Hhhccc-ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhc---------------------
Confidence 344443 334666666777777776 445566777777777777777654 44333333
Q ss_pred cccccccCCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCC--CC-CcCCcCCCCeecCCCCCcCCccccc
Q 001983 156 SRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAK--VD-NLRKCVNLKHLDLGFNNLRSIAAFS 232 (986)
Q Consensus 156 ~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~--L~-~L~~L~~L~~LdLS~N~Ls~L~~l~ 232 (986)
++|++|+++-|++..+|.+|+.+|.|+.|||++|++.. +| .|..+..|+.|+|+.|.+.-+|+..
T Consensus 79 ------------~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv 146 (264)
T KOG0617|consen 79 ------------PKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV 146 (264)
T ss_pred ------------hhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhh
Confidence 35667777777777777777777777777777776664 34 5666666666666666666666666
Q ss_pred cccccceeeccCCCccCCcc-cCCCCCCCCEEEccCCCCCCCc
Q 001983 233 EVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFS 274 (986)
Q Consensus 233 ~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~lp 274 (986)
..+++|+.|.+..|.+-++| .++.+..|+.|.+.+|+++-+|
T Consensus 147 g~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 147 GKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred hhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 66666666666666665554 5566666666666666666655
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.56 E-value=5.8e-16 Score=171.82 Aligned_cols=254 Identities=19% Similarity=0.172 Sum_probs=181.0
Q ss_pred EEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHH-HhcCCCCCcEEEccCCCCCCCCCcCCC
Q 001983 30 VLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRR-ILKLLTSLKVVSALPPPARDPTPLSLL 108 (986)
Q Consensus 30 ~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~-~L~~L~nLk~L~Ls~N~Ls~~lP~sf~ 108 (986)
..+-+..+|..+|..|+.=. ..++|..| .+..||+ .|..+++|+.|+|++|.|+.+.|.+|.
T Consensus 50 ~VdCr~~GL~eVP~~LP~~t----------------veirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~ 112 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPET----------------VEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK 112 (498)
T ss_pred eEEccCCCcccCcccCCCcc----------------eEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhh
Confidence 45566667777776543211 11233333 3555655 899999999999999999999999999
Q ss_pred CCCCccEEEeeC-CCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccc-------------ccc--CCCCCCCccE
Q 001983 109 PFCRLKVLELRG-CDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIV-------------EIK--DSPQWNRLSF 172 (986)
Q Consensus 109 ~L~nL~~LdLS~-N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~-------------~L~--~l~~L~sL~~ 172 (986)
++++|..|-+.+ |+|+......|.+|..+..+++.-|.+..++.-.+..+. .+. .+..+..++.
T Consensus 113 GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 113 GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKT 192 (498)
T ss_pred hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccch
Confidence 999999887777 999997778888998877777766666555543332222 221 1235567777
Q ss_pred EEccCCccc---cc----------hhhhcCCCCCCEEEC------------------------CC--CCCCCCC--CcCC
Q 001983 173 VSCSCNRLV---IM----------DESLQLLPAVETLDL------------------------SR--NKFAKVD--NLRK 211 (986)
Q Consensus 173 LdLS~N~Lt---~L----------P~sL~~L~~L~~LdL------------------------S~--N~Ls~L~--~L~~ 211 (986)
+.+..|.+. .+ |..++...-..-..+ +. +.....| .|..
T Consensus 193 lhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~ 272 (498)
T KOG4237|consen 193 LHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK 272 (498)
T ss_pred HhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh
Confidence 777777622 11 112222211111111 11 1111123 5889
Q ss_pred cCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEE
Q 001983 212 CVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNL 288 (986)
Q Consensus 212 L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L 288 (986)
+++|+.|+|++|+|+.+.. .+..+..|+.|.|..|+|..+. .|.++..|+.|+|.+|+|+.+.+ .+|..+..|..|
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~-~aF~~~~~l~~l 351 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP-GAFQTLFSLSTL 351 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec-ccccccceeeee
Confidence 9999999999999999875 5666789999999999999984 78999999999999999999865 678899999999
Q ss_pred EecCCCCCCCccc
Q 001983 289 WLEGNPLCCSRWY 301 (986)
Q Consensus 289 ~Ls~NpLt~~~~~ 301 (986)
+|-.|||.|+|.+
T Consensus 352 ~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 352 NLLSNPFNCNCRL 364 (498)
T ss_pred ehccCcccCccch
Confidence 9999999999843
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.56 E-value=3.5e-14 Score=183.31 Aligned_cols=272 Identities=17% Similarity=0.183 Sum_probs=161.3
Q ss_pred ccCCeEEEecCCCcccchhhhhccccchhcccCC-Cc--------cccccccccCCCCCCchhhHHHhcCCCCCcEEEcc
Q 001983 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-PL--------DYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSAL 95 (986)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~-~l--------~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls 95 (986)
...+++|.+..+.+..+|..+ .+.+|..|.... .+ ....+..++++++..++.+|. +..+++|+.|+|.
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 445677777777777776654 233344433211 00 111234566666666666664 6667777777777
Q ss_pred CCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCC-CccchhhcccccccccCCCCCCCccEEE
Q 001983 96 PPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVFASRIVEIKDSPQWNRLSFVS 174 (986)
Q Consensus 96 ~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~-L~~L~~l~~~~l~~L~~l~~L~sL~~Ld 174 (986)
+|.....+|..+..+++|+.|+|++|.....+|..+ +++++..+.+.+|. +..++. ...+|+.|+
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~-------------~~~nL~~L~ 731 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD-------------ISTNISWLD 731 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc-------------ccCCcCeee
Confidence 766666677777777777777777764334455433 44444444344331 111111 012444444
Q ss_pred ccCCccccchhh------------------------------hcCCCCCCEEECCCCC-CCCCC-CcCCcCCCCeecCCC
Q 001983 175 CSCNRLVIMDES------------------------------LQLLPAVETLDLSRNK-FAKVD-NLRKCVNLKHLDLGF 222 (986)
Q Consensus 175 LS~N~Lt~LP~s------------------------------L~~L~~L~~LdLS~N~-Ls~L~-~L~~L~~L~~LdLS~ 222 (986)
+++|.+..+|.. ...+++|+.|+|++|. +..+| .+.++++|+.|+|++
T Consensus 732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 444444444322 1123567777887774 33455 678888888888888
Q ss_pred C-CcCCccccccccccceeeccCCC-ccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecC-CCCCCCc
Q 001983 223 N-NLRSIAAFSEVSCHIVKLVLRNN-ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEG-NPLCCSR 299 (986)
Q Consensus 223 N-~Ls~L~~l~~~L~sL~~L~Ls~N-~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~-NpLt~~~ 299 (986)
| .+..+|... .+++|+.|+|++| .+..++.+ .++|+.|+|++|.|+.+| ..+..+++|+.|+|++ |.+...+
T Consensus 812 C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP--~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 812 CINLETLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVP--WWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred CCCcCeeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCccCh--HHHhcCCCCCEEECCCCCCcCccC
Confidence 6 566666544 4678888888886 44445433 357888888888888877 5678888888888887 4455433
Q ss_pred ccchHHhhhcCCCceeecCCCc
Q 001983 300 WYRAQVFSYFAHPAKLKVDGKE 321 (986)
Q Consensus 300 ~~r~~~~~~l~~L~lL~LdgN~ 321 (986)
. .+..++.|+.+.+.+++
T Consensus 887 ~----~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 887 L----NISKLKHLETVDFSDCG 904 (1153)
T ss_pred c----ccccccCCCeeecCCCc
Confidence 1 23345666666666653
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=7.3e-15 Score=180.51 Aligned_cols=229 Identities=20% Similarity=0.239 Sum_probs=171.8
Q ss_pred cccCCeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCC
Q 001983 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPT 103 (986)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~l 103 (986)
+...+..|++..+.+..+|..+. .+|+. +++++|. +..+|..+ .++|+.|+|++|.+. .+
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~--------------L~Ls~N~-LtsLP~~l--~~~L~~L~Ls~N~L~-~L 256 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ--GNIKT--------------LYANSNQ-LTSIPATL--PDTIQEMELSINRIT-EL 256 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc--cCCCE--------------EECCCCc-cccCChhh--hccccEEECcCCccC-cC
Confidence 34567899999999998887543 23333 4455443 55677644 357999999999988 55
Q ss_pred CcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccc
Q 001983 104 PLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM 183 (986)
Q Consensus 104 P~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~L 183 (986)
|..+. .+|+.|+|++|+|+. +|..+. ..+..+.+.+|++..++..++ ++|+.|++++|.|+.+
T Consensus 257 P~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp------------~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 257 PERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAHLP------------SGITHLNVQSNSLTAL 319 (754)
T ss_pred ChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCcccch------------hhHHHHHhcCCccccC
Confidence 65554 589999999999986 565443 245556677787776654322 3688999999999988
Q ss_pred hhhhcCCCCCCEEECCCCCCCCCC-CcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcc-cCCCCCCCC
Q 001983 184 DESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLE 261 (986)
Q Consensus 184 P~sL~~L~~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~ 261 (986)
|..+ .++|+.|++++|.++.+| .+ .++|+.|+|++|+|+.+|... .++|+.|+|++|+|+.+| .+. ..|+
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~ 391 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQ 391 (754)
T ss_pred Cccc--cccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHH
Confidence 8755 368999999999999887 33 378999999999999887633 368999999999999886 332 4799
Q ss_pred EEEccCCCCCCCchh--hhhcCCCCCcEEEecCCCCCC
Q 001983 262 GLDISYNIISTFSEL--EFLASLPYLLNLWLEGNPLCC 297 (986)
Q Consensus 262 ~LdLS~N~Ls~lp~l--~~L~~L~~L~~L~Ls~NpLt~ 297 (986)
.|++++|+|+.+|.. ..+..++.+..|+|.+|||..
T Consensus 392 ~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 392 IMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 999999999988741 234556899999999999973
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=2.3e-14 Score=157.68 Aligned_cols=219 Identities=26% Similarity=0.271 Sum_probs=116.6
Q ss_pred hhHHHhcCCCCCcEEEccCCCCCC------CCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccch
Q 001983 78 QLRRILKLLTSLKVVSALPPPARD------PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALR 151 (986)
Q Consensus 78 ~Lp~~L~~L~nLk~L~Ls~N~Ls~------~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~ 151 (986)
.++..+...++|++|+++++.+.. .++..+..+++|+.|+|++|.+....+..+..+..
T Consensus 42 ~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~--------------- 106 (319)
T cd00116 42 ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLR--------------- 106 (319)
T ss_pred HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhc---------------
Confidence 455556666666666666665541 12234455666666666666665444443333321
Q ss_pred hhcccccccccCCCCCCCccEEEccCCccc-----cchhhhcCC-CCCCEEECCCCCCCCC------CCcCCcCCCCeec
Q 001983 152 HVFASRIVEIKDSPQWNRLSFVSCSCNRLV-----IMDESLQLL-PAVETLDLSRNKFAKV------DNLRKCVNLKHLD 219 (986)
Q Consensus 152 ~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt-----~LP~sL~~L-~~L~~LdLS~N~Ls~L------~~L~~L~~L~~Ld 219 (986)
. ++|++|++++|+++ .+...+..+ ++|+.|++++|.++.- ..+..+++|+.|+
T Consensus 107 --------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 107 --------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171 (319)
T ss_pred --------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE
Confidence 1 24666666666665 222344455 6666666666666631 1344555666666
Q ss_pred CCCCCcCC-----ccccccccccceeeccCCCccCCc------ccCCCCCCCCEEEccCCCCCCCchhhhhc----CCCC
Q 001983 220 LGFNNLRS-----IAAFSEVSCHIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIISTFSELEFLA----SLPY 284 (986)
Q Consensus 220 LS~N~Ls~-----L~~l~~~L~sL~~L~Ls~N~Ls~L------~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~----~L~~ 284 (986)
|++|.++. ++.....+++|+.|+|++|.++.. ..+..+++|++|++++|.+++........ ..+.
T Consensus 172 l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~ 251 (319)
T cd00116 172 LANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS 251 (319)
T ss_pred CcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCC
Confidence 66666653 111122234666666666666542 23455666777777777666532111111 2356
Q ss_pred CcEEEecCCCCCCCcc-cchHHhhhcCCCceeecCCCccChhH
Q 001983 285 LLNLWLEGNPLCCSRW-YRAQVFSYFAHPAKLKVDGKEISTRE 326 (986)
Q Consensus 285 L~~L~Ls~NpLt~~~~-~r~~~~~~l~~L~lL~LdgN~Is~~e 326 (986)
|+.|++++|.++.... .....+..++.++.+++++|.++...
T Consensus 252 L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 252 LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred ceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 7777777776653311 01122334456677777777776553
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=1.8e-16 Score=159.45 Aligned_cols=183 Identities=20% Similarity=0.274 Sum_probs=155.7
Q ss_pred CCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccchh
Q 001983 106 SLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE 185 (986)
Q Consensus 106 sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~ 185 (986)
.+.++.+++.|-|++|.++. +|..+..+. +|+.|++++|+|+.+|.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~-vppnia~l~---------------------------------nlevln~~nnqie~lp~ 73 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV-VPPNIAELK---------------------------------NLEVLNLSNNQIEELPT 73 (264)
T ss_pred cccchhhhhhhhcccCceee-cCCcHHHhh---------------------------------hhhhhhcccchhhhcCh
Confidence 35567889999999999987 444555543 78999999999999999
Q ss_pred hhcCCCCCCEEECCCCCCCCCC-CcCCcCCCCeecCCCCCcC--CccccccccccceeeccCCCccCCcc-cCCCCCCCC
Q 001983 186 SLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLR--SIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLE 261 (986)
Q Consensus 186 sL~~L~~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS~N~Ls--~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~ 261 (986)
++..++.|+.|+++-|++..+| +|+.++.|+.|||.+|++. .+|..++.+..|+.|+|+.|.+.-+| .++.+++|+
T Consensus 74 ~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lq 153 (264)
T KOG0617|consen 74 SISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQ 153 (264)
T ss_pred hhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhccee
Confidence 9999999999999999999987 8999999999999999997 47777778899999999999999985 899999999
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChh
Q 001983 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (986)
Q Consensus 262 ~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~ 325 (986)
.|.+..|.+-.+| ..++.+++|+.|.+.||.++-.+.-. ..+.....-+.+.+..|||...
T Consensus 154 il~lrdndll~lp--keig~lt~lrelhiqgnrl~vlppel-~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 154 ILSLRDNDLLSLP--KEIGDLTRLRELHIQGNRLTVLPPEL-ANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred EEeeccCchhhCc--HHHHHHHHHHHHhcccceeeecChhh-hhhhhhhhHHHHhhhhCCCCCh
Confidence 9999999999998 67899999999999999998665211 2233334456778889988754
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.50 E-value=7e-15 Score=151.41 Aligned_cols=156 Identities=29% Similarity=0.425 Sum_probs=67.4
Q ss_pred CccccchhhhcCCCCCCEEECCCCCCCCCCCcC-CcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcc-cC-
Q 001983 178 NRLVIMDESLQLLPAVETLDLSRNKFAKVDNLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GI- 254 (986)
Q Consensus 178 N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~-~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~L- 254 (986)
+.|..+|. +.+...+++|+|.+|.|+.++.++ .+.+|+.|+|++|.|+.+..+. .++.|+.|++++|+|+.+. .+
T Consensus 7 ~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~-~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 7 NMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLP-GLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHH
T ss_pred cccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCcc-ChhhhhhcccCCCCCCccccchH
Confidence 34444432 334446788888888888887776 4778888888888888877644 3578888888888888874 44
Q ss_pred CCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChhHHHHHHHHH
Q 001983 255 ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLII 334 (986)
Q Consensus 255 ~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~~~~~~l~ 334 (986)
..+|+|+.|+|++|+|..+..+..+..+++|+.|+|.+||++..+.||..++..+|. +..||+.+|+..++..+..+|
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~--Lk~LD~~~V~~~ER~~A~~~f 162 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPS--LKVLDGQDVTEEERQEAEKLF 162 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT---SEETTEETTS-B--------
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcCh--hheeCCEEccHHHhccccccc
Confidence 368899999999999999888888999999999999999999999999999887755 557899999999999988887
Q ss_pred Hhh
Q 001983 335 ARR 337 (986)
Q Consensus 335 ~~~ 337 (986)
..+
T Consensus 163 ~~~ 165 (175)
T PF14580_consen 163 KGK 165 (175)
T ss_dssp ---
T ss_pred ccc
Confidence 765
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.50 E-value=2.9e-13 Score=174.86 Aligned_cols=280 Identities=18% Similarity=0.150 Sum_probs=175.6
Q ss_pred hhcCcccccCCeEEEecCCCc-------ccchhhhhccc-cchhccc-CCC-------ccccccccccCCCCCCchhhHH
Q 001983 18 EQQAGPLIEGSIVLKLNPAGL-------HYVQSRLEALR-ELERLLA-GAP-------LDYLRAYVSDLGDHRALEQLRR 81 (986)
Q Consensus 18 ~~~~~~lL~~l~~L~L~~~~L-------~~Lp~~L~~L~-~Le~L~l-~~~-------l~~l~l~vLdLs~~~~L~~Lp~ 81 (986)
..++..-+.+++.|++..+.. ..+|..+..++ +|..|.. +.+ +..-.+..+++.++. +..+|.
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~ 628 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSK-LEKLWD 628 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcc-cccccc
Confidence 334444577788888855432 13444443332 2333222 111 111234567888765 677888
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccC-CCccchhhccccccc
Q 001983 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN-STNALRHVFASRIVE 160 (986)
Q Consensus 82 ~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N-~L~~L~~l~~~~l~~ 160 (986)
.+..+++|+.|+|+++.....+| .+..+++|+.|+|++|.....+|..+..++++..+.+.++ .+..++.
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-------- 699 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-------- 699 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC--------
Confidence 88999999999999887655666 4888999999999999877778989988888777776664 2333322
Q ss_pred ccCCCCCCCccEEEccCCc-cccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCc-------cc-c
Q 001983 161 IKDSPQWNRLSFVSCSCNR-LVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSI-------AA-F 231 (986)
Q Consensus 161 L~~l~~L~sL~~LdLS~N~-Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L-------~~-l 231 (986)
...+++|+.|++++|. +..+|.. ..+|+.|+|++|.+..+|....+++|+.|.+.++....+ ++ .
T Consensus 700 ---~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 700 ---GINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred ---cCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhh
Confidence 1246799999999884 4466543 468899999999998887544667777777766432211 11 1
Q ss_pred ccccccceeeccCCCc-cCCcc-cCCCCCCCCEEEccCC-CCCCCchhhhhcCCCCCcEEEecCCCCCC-CcccchHHhh
Q 001983 232 SEVSCHIVKLVLRNNA-LTTLR-GIENLKSLEGLDISYN-IISTFSELEFLASLPYLLNLWLEGNPLCC-SRWYRAQVFS 307 (986)
Q Consensus 232 ~~~L~sL~~L~Ls~N~-Ls~L~-~L~~L~sL~~LdLS~N-~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~-~~~~r~~~~~ 307 (986)
...+++|+.|+|++|. +..+| .+.++++|+.|+|++| .+..+|. . ..+++|+.|+|++|.... .+ .
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~--~-~~L~sL~~L~Ls~c~~L~~~p-------~ 843 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT--G-INLESLESLDLSGCSRLRTFP-------D 843 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC--C-CCccccCEEECCCCCcccccc-------c
Confidence 1123567777777764 33344 5667777777777765 4555552 1 256666777776654321 11 1
Q ss_pred hcCCCceeecCCCccC
Q 001983 308 YFAHPAKLKVDGKEIS 323 (986)
Q Consensus 308 ~l~~L~lL~LdgN~Is 323 (986)
...+++.|.|.+|.+.
T Consensus 844 ~~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 844 ISTNISDLNLSRTGIE 859 (1153)
T ss_pred cccccCEeECCCCCCc
Confidence 1245666666666654
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.49 E-value=2.4e-14 Score=157.63 Aligned_cols=258 Identities=23% Similarity=0.175 Sum_probs=177.9
Q ss_pred CCeEEEecCCCc-----ccchhhhhccccchhcccCCCccccccccccCCC-CCCchhhHHHhcCCCCCcEEEccCCCCC
Q 001983 27 GSIVLKLNPAGL-----HYVQSRLEALRELERLLAGAPLDYLRAYVSDLGD-HRALEQLRRILKLLTSLKVVSALPPPAR 100 (986)
Q Consensus 27 ~l~~L~L~~~~L-----~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~-~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls 100 (986)
.++.|.+..+.+ ..++..+...++|+.+.... ..++. ...+..++..+..+++|+.|+|++|.+.
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~---------~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSL---------NETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccc---------cccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 377899998887 45666666666666554421 11221 3345667788888999999999999998
Q ss_pred CCCCcCCCCCCC---ccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCC-CCccEEEcc
Q 001983 101 DPTPLSLLPFCR---LKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQW-NRLSFVSCS 176 (986)
Q Consensus 101 ~~lP~sf~~L~n---L~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L-~sL~~LdLS 176 (986)
...+..+..+.+ |++|+|++|.++......+.... ..+ ++|+.|+++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l-----------------------------~~~~~~L~~L~L~ 145 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL-----------------------------KDLPPALEKLVLG 145 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH-----------------------------HhCCCCceEEEcC
Confidence 766666665555 99999999998752222111100 012 578999999
Q ss_pred CCccc-----cchhhhcCCCCCCEEECCCCCCCC-----C-CCcCCcCCCCeecCCCCCcCCcc-----cccccccccee
Q 001983 177 CNRLV-----IMDESLQLLPAVETLDLSRNKFAK-----V-DNLRKCVNLKHLDLGFNNLRSIA-----AFSEVSCHIVK 240 (986)
Q Consensus 177 ~N~Lt-----~LP~sL~~L~~L~~LdLS~N~Ls~-----L-~~L~~L~~L~~LdLS~N~Ls~L~-----~l~~~L~sL~~ 240 (986)
+|.++ .++..+..++.|+.|+|++|.++. + ..+..+++|+.|+|++|.++... .....+++|+.
T Consensus 146 ~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~ 225 (319)
T cd00116 146 RNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEV 225 (319)
T ss_pred CCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCE
Confidence 99888 445567778889999999999884 1 24556679999999999887432 23444678999
Q ss_pred eccCCCccCCc--cc-----CCCCCCCCEEEccCCCCCCCch---hhhhcCCCCCcEEEecCCCCCCCccc-chHHhhhc
Q 001983 241 LVLRNNALTTL--RG-----IENLKSLEGLDISYNIISTFSE---LEFLASLPYLLNLWLEGNPLCCSRWY-RAQVFSYF 309 (986)
Q Consensus 241 L~Ls~N~Ls~L--~~-----L~~L~sL~~LdLS~N~Ls~lp~---l~~L~~L~~L~~L~Ls~NpLt~~~~~-r~~~~~~l 309 (986)
|++++|.++.. .. ....+.|+.|++++|.|++... ...+..+++|+.|++++|++...... ....+..+
T Consensus 226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~ 305 (319)
T cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEP 305 (319)
T ss_pred EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhc
Confidence 99999998863 11 1235789999999999874221 13456678999999999999866321 22233333
Q ss_pred -CCCceeecCCCcc
Q 001983 310 -AHPAKLKVDGKEI 322 (986)
Q Consensus 310 -~~L~lL~LdgN~I 322 (986)
+.++.+.+.+|++
T Consensus 306 ~~~~~~~~~~~~~~ 319 (319)
T cd00116 306 GNELESLWVKDDSF 319 (319)
T ss_pred CCchhhcccCCCCC
Confidence 5677777777764
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.1e-14 Score=163.57 Aligned_cols=312 Identities=19% Similarity=0.161 Sum_probs=205.4
Q ss_pred ccchhhHHHHHHHHHhhcCcccccCCeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCC----CCCchh
Q 001983 3 IVTGDRYLEKLVKFVEQQAGPLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGD----HRALEQ 78 (986)
Q Consensus 3 ~v~G~~yl~~lv~~l~~~~~~lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~----~~~L~~ 78 (986)
.++|.+||...+ |++++|+...++ .+-...+..+-+++-. .- +...+. ..++.+++ .-.+++
T Consensus 47 ~vdgk~YF~~q~----P~GGSFik~~kV-~~p~d~~~t~~ery~e-----~~--s~~sd~--~~~~si~nK~vE~iGfDk 112 (505)
T KOG3207|consen 47 IVDGKRYFQTQH----PNGGSFIKPGKV-KFPTDLLRTFKERYYE-----KY--SYSSDL--ESVLSISNKQVEFIGFDK 112 (505)
T ss_pred eecceeeeeeec----CCCccccCCccC-CCCccHHHHHHHHHHH-----hh--cCCcch--hhHhhhcCceeEEecHHH
Confidence 578999998888 889988887632 1111122222221110 00 000000 00111111 011344
Q ss_pred hHHHhcCCCCCcEEEccCCCCCCCCC-cCCCCCCCccEEEeeCCCCCccc--hhhHHhhhhhhhhhhccCCCccchhhcc
Q 001983 79 LRRILKLLTSLKVVSALPPPARDPTP-LSLLPFCRLKVLELRGCDLSTSA--AKGLLELRHTLEKIICHNSTNALRHVFA 155 (986)
Q Consensus 79 Lp~~L~~L~nLk~L~Ls~N~Ls~~lP-~sf~~L~nL~~LdLS~N~Lt~~l--p~~L~~L~~LL~LLL~~N~L~~L~~l~~ 155 (986)
+..--+++.+|+.+.|.+..+....- .....+++++.|||+.|-+.... ......|+++..+.++.|.+.......
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~- 191 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN- 191 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-
Confidence 55555677788888887766542221 34556788888888888776532 234455666666666666543221110
Q ss_pred cccccccCCCCCCCccEEEccCCccc--cchhhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-
Q 001983 156 SRIVEIKDSPQWNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA- 230 (986)
Q Consensus 156 ~~l~~L~~l~~L~sL~~LdLS~N~Lt--~LP~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~- 230 (986)
.+ ..++.|+.|.|+.|.|+ .+...+..+|+|+.|+|..|....+. ....+..|+.|||++|++-..+.
T Consensus 192 --~~-----~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~ 264 (505)
T KOG3207|consen 192 --TT-----LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG 264 (505)
T ss_pred --ch-----hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc
Confidence 00 13568999999999998 55456778999999999999633332 55667889999999999888773
Q ss_pred -cccccccceeeccCCCccCCc--cc------CCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 001983 231 -FSEVSCHIVKLVLRNNALTTL--RG------IENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (986)
Q Consensus 231 -l~~~L~sL~~L~Ls~N~Ls~L--~~------L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~ 301 (986)
....++.|..|+++.+.|.++ +. ...+++|+.|++..|+|..++.+..+..+++|+.|.+..|++.....
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~- 343 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD- 343 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccccc-
Confidence 455689999999999999986 22 36679999999999999999988888899999999999999986543
Q ss_pred chHHhhhcCCCceeecCCCccChhHHHHHHHHHHhh
Q 001983 302 RAQVFSYFAHPAKLKVDGKEISTRELWERQLIIARR 337 (986)
Q Consensus 302 r~~~~~~l~~L~lL~LdgN~Is~~e~~~~~~l~~~~ 337 (986)
.+..+...+..+...|++-.+...++..++..|...
T Consensus 344 ~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~~~ 379 (505)
T KOG3207|consen 344 TAKLLVIARISQLVKLNDVDISPNERRDAELYYLSK 379 (505)
T ss_pred ceeEEeeeehhhhhhhcccccChHHhhhhhhhHHhh
Confidence 223333445567778888888888888888776665
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=4.9e-12 Score=146.07 Aligned_cols=176 Identities=24% Similarity=0.282 Sum_probs=144.3
Q ss_pred CCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccchhhhc
Q 001983 109 PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQ 188 (986)
Q Consensus 109 ~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~sL~ 188 (986)
.+.--...||+.|++.. +|..+..+..+..+.+.+|++..++.-+ ..+..|++|+|+.|++..+|..++
T Consensus 73 ~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r~ip~~i----------~~L~~lt~l~ls~NqlS~lp~~lC 141 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIRTIPEAI----------CNLEALTFLDLSSNQLSHLPDGLC 141 (722)
T ss_pred cccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccceecchhh----------hhhhHHHHhhhccchhhcCChhhh
Confidence 45566678888888865 6777777776666777777766665432 235678999999999999999888
Q ss_pred CCCCCCEEECCCCCCCCCC-CcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcc-cCCCCCCCCEEEcc
Q 001983 189 LLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDIS 266 (986)
Q Consensus 189 ~L~~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS 266 (986)
.|+ |+.|-+++|+++.+| .++.+..|..||.+.|.|..+++....+.+|+.|.+..|++..+| .+..| .|..||++
T Consensus 142 ~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfS 219 (722)
T KOG0532|consen 142 DLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFS 219 (722)
T ss_pred cCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecc
Confidence 887 899999999999886 788889999999999999999987778889999999999998885 55644 48999999
Q ss_pred CCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 001983 267 YNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (986)
Q Consensus 267 ~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~ 299 (986)
+|+|+.+| ..|.+|..|++|-|.+||+...+
T Consensus 220 cNkis~iP--v~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 220 CNKISYLP--VDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred cCceeecc--hhhhhhhhheeeeeccCCCCCCh
Confidence 99999998 57899999999999999998653
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=9.3e-13 Score=151.90 Aligned_cols=192 Identities=21% Similarity=0.281 Sum_probs=158.2
Q ss_pred cccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhcc
Q 001983 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (986)
Q Consensus 65 l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~ 144 (986)
....|++.|+ +.++|..+..+-.|..+.|..|.+. .+|.++.++..|++|||+.|+++. +|..++.|+
T Consensus 77 t~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~-lp~~lC~lp--------- 144 (722)
T KOG0532|consen 77 TVFADLSRNR-FSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH-LPDGLCDLP--------- 144 (722)
T ss_pred hhhhhccccc-cccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc-CChhhhcCc---------
Confidence 3446777765 4457777788888888888888887 677888889999999999998865 666666654
Q ss_pred CCCccchhhcccccccccCCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCC-CcCCcCCCCeecCCCC
Q 001983 145 NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFN 223 (986)
Q Consensus 145 N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS~N 223 (986)
|+.|.+++|+++.+|+.++.++.|..|+.+.|.|..++ .++.+.+|+.|.+..|
T Consensus 145 -------------------------Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 145 -------------------------LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred -------------------------ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh
Confidence 88999999999999999999999999999999999986 8999999999999999
Q ss_pred CcCCccccccccccceeeccCCCccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhh-cCCCCCcEEEecCCC
Q 001983 224 NLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFL-ASLPYLLNLWLEGNP 294 (986)
Q Consensus 224 ~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L-~~L~~L~~L~Ls~Np 294 (986)
++..+|.....+ .|..|++++|+|..|| .|.+|..|++|-|.+|.++.-|.-... +...-.++|+...+.
T Consensus 200 ~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 200 HLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 999998865544 5999999999999998 899999999999999999986642222 344456777777763
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=5.6e-11 Score=122.66 Aligned_cols=134 Identities=26% Similarity=0.371 Sum_probs=52.5
Q ss_pred ECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcccCCCCCCCCEEEccCCCCCCCchh
Q 001983 197 DLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSEL 276 (986)
Q Consensus 197 dLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l 276 (986)
.|..+.|...+.+.++..++.|+|.+|.|+.+..+...+.+|+.|+|++|.|+.++.+..++.|+.|+|++|.|+.+..
T Consensus 3 ~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~- 81 (175)
T PF14580_consen 3 RLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISE- 81 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CH-
T ss_pred cccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcccc-
Confidence 3566777778888888899999999999999987766678999999999999999999999999999999999999863
Q ss_pred hhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChhHHHHHHHH
Q 001983 277 EFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLI 333 (986)
Q Consensus 277 ~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~~~~~~l 333 (986)
.....+|+|+.|+|++|.|.....+ ..+..++.|+.+.|.+||+......+..++
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi 136 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVI 136 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHH
T ss_pred chHHhCCcCCEEECcCCcCCChHHh--HHHHcCCCcceeeccCCcccchhhHHHHHH
Confidence 2224689999999999999876543 446788999999999999987665554444
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=3.1e-10 Score=130.09 Aligned_cols=130 Identities=34% Similarity=0.360 Sum_probs=91.4
Q ss_pred CCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCc-CCcCCCCeecCCCCCcCCccccccccccceeeccC
Q 001983 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNL-RKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLR 244 (986)
Q Consensus 166 ~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L-~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls 244 (986)
.+++|+.|+++.|++..+|.....+++|+.|++++|++..++.. ..+..|+.|.+++|.+..++.....+.++..|.+.
T Consensus 161 ~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 161 NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELS 240 (394)
T ss_pred ccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccC
Confidence 35577777777777777777666777777777777777777654 45555777777777655555545555677777777
Q ss_pred CCccCCc-ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001983 245 NNALTTL-RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (986)
Q Consensus 245 ~N~Ls~L-~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~ 298 (986)
+|++..+ ..+..+++|+.|++++|.++.++. +..+.+|+.|++++|.+...
T Consensus 241 ~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 241 NNKLEDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred Cceeeeccchhccccccceecccccccccccc---ccccCccCEEeccCcccccc
Confidence 7777763 466677777777887777777753 66777777777777777643
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=3.3e-10 Score=129.81 Aligned_cols=181 Identities=24% Similarity=0.276 Sum_probs=149.7
Q ss_pred hcCCCCCcEEEccCCCCCCCCCcCCCCCC-CccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccc
Q 001983 83 LKLLTSLKVVSALPPPARDPTPLSLLPFC-RLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (986)
Q Consensus 83 L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~-nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L 161 (986)
+..++.++.|++.+|.++ .+|.....+. +|+.|++++|.+.. +|..+..++.+..+.+..|.+..++....
T Consensus 112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~------ 183 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSDLPKLLS------ 183 (394)
T ss_pred hhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhhhhhhhh------
Confidence 445688999999988888 4455566664 89999999999876 45667788888888888887766665421
Q ss_pred cCCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCC-CCCCCCcCCcCCCCeecCCCCCcCCcccccccccccee
Q 001983 162 KDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNK-FAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVK 240 (986)
Q Consensus 162 ~~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~-Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~ 240 (986)
..+.|+.|++++|++..+|.....+..|++|.+++|. +..+..+..+..+..|.+.+|++..++.....++.|+.
T Consensus 184 ----~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~ 259 (394)
T COG4886 184 ----NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLET 259 (394)
T ss_pred ----hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccce
Confidence 3568999999999999999887777789999999995 54556789999999999999999887777777788999
Q ss_pred eccCCCccCCcccCCCCCCCCEEEccCCCCCCCch
Q 001983 241 LVLRNNALTTLRGIENLKSLEGLDISYNIISTFSE 275 (986)
Q Consensus 241 L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~ 275 (986)
|++++|.++.++.+..+.+|+.|++++|.+...+.
T Consensus 260 L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 260 LDLSNNQISSISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred eccccccccccccccccCccCEEeccCccccccch
Confidence 99999999999889999999999999999987764
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=3.9e-10 Score=122.34 Aligned_cols=228 Identities=20% Similarity=0.182 Sum_probs=163.4
Q ss_pred chhhHHHhcCCCCCcEEEccCCCCCC--CCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhh
Q 001983 76 LEQLRRILKLLTSLKVVSALPPPARD--PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHV 153 (986)
Q Consensus 76 L~~Lp~~L~~L~nLk~L~Ls~N~Ls~--~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l 153 (986)
.+..-..-...+.++.|+|.+|.|++ .+...+.++|.|++|+|+.|.+...+ ..++
T Consensus 60 ~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I----~~lp------------------ 117 (418)
T KOG2982|consen 60 EGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI----KSLP------------------ 117 (418)
T ss_pred chhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc----ccCc------------------
Confidence 34333334567889999999999873 34445678999999999999987522 2221
Q ss_pred cccccccccCCCCCCCccEEEccCCccc--cchhhhcCCCCCCEEECCCCCCCCCC----CcCCc-CCCCeecCCCCCcC
Q 001983 154 FASRIVEIKDSPQWNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVD----NLRKC-VNLKHLDLGFNNLR 226 (986)
Q Consensus 154 ~~~~l~~L~~l~~L~sL~~LdLS~N~Lt--~LP~sL~~L~~L~~LdLS~N~Ls~L~----~L~~L-~~L~~LdLS~N~Ls 226 (986)
....+|+.|-|.+..|. .....+..+|.++.|.+|.|.+..+. ..... +.+++|.+..|...
T Consensus 118 -----------~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~ 186 (418)
T KOG2982|consen 118 -----------LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ 186 (418)
T ss_pred -----------ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH
Confidence 12457888888888776 55567788999999999999666531 12222 35666666665433
Q ss_pred Cc---cccccccccceeeccCCCccCCc---ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC--
Q 001983 227 SI---AAFSEVSCHIVKLVLRNNALTTL---RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS-- 298 (986)
Q Consensus 227 ~L---~~l~~~L~sL~~L~Ls~N~Ls~L---~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~-- 298 (986)
.. -.....++++..+.+..|.|.+. .....+|.+-.|+|+.|+|.++..++.+.+++.|..|.+++||+...
T Consensus 187 ~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 187 LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 21 12344468899999999999886 36778888899999999999999999999999999999999999764
Q ss_pred cccchHHhhhcCCCceeecCCCccChhHHHHHHHHHHhh
Q 001983 299 RWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLIIARR 337 (986)
Q Consensus 299 ~~~r~~~~~~l~~L~lL~LdgN~Is~~e~~~~~~l~~~~ 337 (986)
+.-+... -..+......|+|..|+..++...+..|.+-
T Consensus 267 ~~err~l-lIaRL~~v~vLNGskIss~er~dSEr~fVRy 304 (418)
T KOG2982|consen 267 GGERRFL-LIARLTKVQVLNGSKISSRERKDSERRFVRY 304 (418)
T ss_pred CCcceEE-EEeeccceEEecCcccchhhhhhhHHHHHHH
Confidence 2222222 1233455667889999999988877776664
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1e-10 Score=132.13 Aligned_cols=211 Identities=20% Similarity=0.161 Sum_probs=147.6
Q ss_pred CCCCCccEEEeeCCCCCccch-hhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccchhh
Q 001983 108 LPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDES 186 (986)
Q Consensus 108 ~~L~nL~~LdLS~N~Lt~~lp-~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~s 186 (986)
+++.+|+...|.++.+....- .....+++...+.++.|-+..+..+. .-...+++|+.|+|+.|++...-.+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~-------~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVL-------KIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHH-------HHHHhcccchhcccccccccCCccc
Confidence 478999999999999865221 35566777667777766433322221 1123577899999999988733222
Q ss_pred --hcCCCCCCEEECCCCCCCCCC---CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCc---ccCCCC
Q 001983 187 --LQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL---RGIENL 257 (986)
Q Consensus 187 --L~~L~~L~~LdLS~N~Ls~L~---~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L---~~L~~L 257 (986)
-..++.|+.|.|+.|.|+.-+ .+..+|+|..|+|..|..-.+.. ....+..|+.|+|++|++-.. +....+
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence 225678899999999888522 45667899999999995322222 233467899999999988775 367888
Q ss_pred CCCCEEEccCCCCCCCchhhh-----hcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChhHH
Q 001983 258 KSLEGLDISYNIISTFSELEF-----LASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (986)
Q Consensus 258 ~sL~~LdLS~N~Ls~lp~l~~-----L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~ 327 (986)
+.|..|+++.+.|.++..++. ...+++|++|++..|++..-+.+ ..+..+++++.+.+.+|+++.++-
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl--~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL--NHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccccc--chhhccchhhhhhccccccccccc
Confidence 999999999999887654332 45788999999999999644322 234566778888888998886553
No 34
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=4e-10 Score=130.90 Aligned_cols=229 Identities=27% Similarity=0.328 Sum_probs=165.0
Q ss_pred HHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhccccccc
Q 001983 81 RILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE 160 (986)
Q Consensus 81 ~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~ 160 (986)
..+..+++|..|+|.+|.|..... .+..+++|++|+|++|.|+... ++..++.+..+.+.+|.+..+.++
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~~------- 158 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISGL------- 158 (414)
T ss_pred cccccccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcchhccCC-------
Confidence 346778888999998888874432 2677889999999999888633 455666666667777765555443
Q ss_pred ccCCCCCCCccEEEccCCccccchhh-hcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccc-cccc
Q 001983 161 IKDSPQWNRLSFVSCSCNRLVIMDES-LQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEV-SCHI 238 (986)
Q Consensus 161 L~~l~~L~sL~~LdLS~N~Lt~LP~s-L~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~-L~sL 238 (986)
..+..|+.+++++|.+..+... +..+.+|+.+++.+|.+..+..+..+..+..+++..|.++.+.+.... ..+|
T Consensus 159 ----~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L 234 (414)
T KOG0531|consen 159 ----ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHL 234 (414)
T ss_pred ----ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHH
Confidence 3466888888888888877553 577888888888888888887777777777778888888877654433 1138
Q ss_pred eeeccCCCccCCc-ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc-ccchHHhhhcCCCceee
Q 001983 239 VKLVLRNNALTTL-RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR-WYRAQVFSYFAHPAKLK 316 (986)
Q Consensus 239 ~~L~Ls~N~Ls~L-~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~-~~r~~~~~~l~~L~lL~ 316 (986)
+.+++++|.+..+ ..+..++.+..|++..|.+..+.. +...+.+..+++..|++.... ..........+.+..+.
T Consensus 235 ~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (414)
T KOG0531|consen 235 RELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG---LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLT 311 (414)
T ss_pred HHHhcccCccccccccccccccccccchhhcccccccc---ccccchHHHhccCcchhcchhhhhccccccccccccccc
Confidence 8888999988888 688888888889998888887653 566777778888888876331 11111134456677888
Q ss_pred cCCCccChhH
Q 001983 317 VDGKEISTRE 326 (986)
Q Consensus 317 LdgN~Is~~e 326 (986)
+++|++....
T Consensus 312 ~~~~~~~~~~ 321 (414)
T KOG0531|consen 312 LELNPIRKIS 321 (414)
T ss_pred cccCcccccc
Confidence 8888887644
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.82 E-value=1.1e-09 Score=121.26 Aligned_cols=223 Identities=23% Similarity=0.226 Sum_probs=119.5
Q ss_pred ccCCeEEEecCCCcc-----cchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCC
Q 001983 25 IEGSIVLKLNPAGLH-----YVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPA 99 (986)
Q Consensus 25 L~~l~~L~L~~~~L~-----~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~L 99 (986)
..++..++|+.+.+. .+.+.|.+.++|........+... . ...--..+..+.+.+-.+|+|++|+|+.|.+
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR-~---~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGR-L---KDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCC-c---HHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 455677777777653 444555555555444321110000 0 0000011222334556677888888888877
Q ss_pred CCCCCcCC----CCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEc
Q 001983 100 RDPTPLSL----LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSC 175 (986)
Q Consensus 100 s~~lP~sf----~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdL 175 (986)
....+..| ..+..|++|.|.+|.+.......++.- +..+. .| ...+.-+.|+++.+
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~a--l~~l~--~~----------------kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRA--LFELA--VN----------------KKAASKPKLRVFIC 164 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHH--HHHHH--HH----------------hccCCCcceEEEEe
Confidence 65444433 345777888888877753222222221 01111 11 01123457899999
Q ss_pred cCCcccc-----chhhhcCCCCCCEEECCCCCCCC--C----CCcCCcCCCCeecCCCCCcCCccc-----cccccccce
Q 001983 176 SCNRLVI-----MDESLQLLPAVETLDLSRNKFAK--V----DNLRKCVNLKHLDLGFNNLRSIAA-----FSEVSCHIV 239 (986)
Q Consensus 176 S~N~Lt~-----LP~sL~~L~~L~~LdLS~N~Ls~--L----~~L~~L~~L~~LdLS~N~Ls~L~~-----l~~~L~sL~ 239 (986)
++|++.. +...|+..+.|+.+.++.|.|.. + ..|..+++|+.|||..|-++.-.. ....+++|+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 9998873 33467778888888888888764 1 257777788888888877764322 222344555
Q ss_pred eeccCCCccCCc------ccC-CCCCCCCEEEccCCCCC
Q 001983 240 KLVLRNNALTTL------RGI-ENLKSLEGLDISYNIIS 271 (986)
Q Consensus 240 ~L~Ls~N~Ls~L------~~L-~~L~sL~~LdLS~N~Ls 271 (986)
.|+++.|.++.- ..+ ...|+|+.|.|.+|.|+
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 555555555441 111 22445555555555544
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=5.9e-10 Score=129.44 Aligned_cols=246 Identities=25% Similarity=0.251 Sum_probs=180.8
Q ss_pred cccCCeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCC
Q 001983 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPT 103 (986)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~l 103 (986)
.+..++++.+..+.+..+-..+..+++|+.+ ++.++ .+..+...+..+++|++|+|++|.|+...
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l--------------~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~ 134 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEAL--------------DLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE 134 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeee--------------ecccc-chhhcccchhhhhcchheecccccccccc
Confidence 3455556666666666644445555554444 34433 24444444778999999999999998665
Q ss_pred CcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccc
Q 001983 104 PLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM 183 (986)
Q Consensus 104 P~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~L 183 (986)
+ +..++.|+.|++++|.|+. ...+..+..+..+.+.+|.+..+... . +..+.+|+.+.+..|.+..+
T Consensus 135 ~--l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~--------~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 135 G--LSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIEND--------E-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred c--hhhccchhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhhh--------h-hhhccchHHHhccCCchhcc
Confidence 4 6777889999999999986 23444466656666777766555542 0 23567899999999999876
Q ss_pred hhhhcCCCCCCEEECCCCCCCCCCCcCCcCC--CCeecCCCCCcCCccccccccccceeeccCCCccCCcccCCCCCCCC
Q 001983 184 DESLQLLPAVETLDLSRNKFAKVDNLRKCVN--LKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLE 261 (986)
Q Consensus 184 P~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~--L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~ 261 (986)
..+..+..+..+++..|.++.+..+..+.. |+.|++++|.+..++.....+..+..|++.+|++..+..+...+.+.
T Consensus 202 -~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~ 280 (414)
T KOG0531|consen 202 -EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLS 280 (414)
T ss_pred -cchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHH
Confidence 344555566666999999999887777776 99999999999988544555688999999999999998889999999
Q ss_pred EEEccCCCCCCCch-h--hhhcCCCCCcEEEecCCCCCCC
Q 001983 262 GLDISYNIISTFSE-L--EFLASLPYLLNLWLEGNPLCCS 298 (986)
Q Consensus 262 ~LdLS~N~Ls~lp~-l--~~L~~L~~L~~L~Ls~NpLt~~ 298 (986)
.+.+..|.+..... . ......+.+..+.+.+||+...
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 281 ELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred HhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 99999998873221 1 2256778999999999999764
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=1.3e-09 Score=118.27 Aligned_cols=132 Identities=23% Similarity=0.242 Sum_probs=98.9
Q ss_pred cCCCCCCEEECCCCCCCCCC-CcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcc-cCCCCCCCCEEEc
Q 001983 188 QLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDI 265 (986)
Q Consensus 188 ~~L~~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdL 265 (986)
..+..|+.||||+|.|+.++ ...-+|.++.|+++.|.|..+..+ ..+++|+.|+|++|.++.+. +-..+-+++.|.|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nL-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNL-AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhh-hhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 34556888888888888876 566668888888888888887773 34578888888888888875 3456778888888
Q ss_pred cCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChh
Q 001983 266 SYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (986)
Q Consensus 266 S~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~ 325 (986)
+.|.|.++. .+..+-+|..|++++|+|...... ..+..++.|+.+.|-+||+...
T Consensus 360 a~N~iE~LS---GL~KLYSLvnLDl~~N~Ie~ldeV--~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIETLS---GLRKLYSLVNLDLSSNQIEELDEV--NHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhhhh---hhHhhhhheeccccccchhhHHHh--cccccccHHHHHhhcCCCcccc
Confidence 888888764 366777888888888888754322 2356778888888888888754
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.71 E-value=6.9e-09 Score=115.06 Aligned_cols=228 Identities=20% Similarity=0.239 Sum_probs=164.6
Q ss_pred cccCCCCCC----chhhHHHhcCCCCCcEEEccCC---CCCCCCCc-------CCCCCCCccEEEeeCCCCCccchhhHH
Q 001983 67 VSDLGDHRA----LEQLRRILKLLTSLKVVSALPP---PARDPTPL-------SLLPFCRLKVLELRGCDLSTSAAKGLL 132 (986)
Q Consensus 67 vLdLs~~~~----L~~Lp~~L~~L~nLk~L~Ls~N---~Ls~~lP~-------sf~~L~nL~~LdLS~N~Lt~~lp~~L~ 132 (986)
.++|+++.. .+.+...+.+.++|+..++++= ++...+|. ++...++|++||||.|-|....+..|.
T Consensus 34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~ 113 (382)
T KOG1909|consen 34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLE 113 (382)
T ss_pred EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHH
Confidence 356676654 2446678888999999998752 22233443 455668999999999999765565555
Q ss_pred hhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccch--------------hhhcCCCCCCEEEC
Q 001983 133 ELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMD--------------ESLQLLPAVETLDL 198 (986)
Q Consensus 133 ~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP--------------~sL~~L~~L~~LdL 198 (986)
.+-+ .+..|++|.|.+|.|.... .-...-+.|+++..
T Consensus 114 ~ll~-----------------------------s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 114 ELLS-----------------------------SCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred HHHH-----------------------------hccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 5432 1346888888888877222 12345678999999
Q ss_pred CCCCCCCCC------CcCCcCCCCeecCCCCCcCC--cc---ccccccccceeeccCCCccCCc------ccCCCCCCCC
Q 001983 199 SRNKFAKVD------NLRKCVNLKHLDLGFNNLRS--IA---AFSEVSCHIVKLVLRNNALTTL------RGIENLKSLE 261 (986)
Q Consensus 199 S~N~Ls~L~------~L~~L~~L~~LdLS~N~Ls~--L~---~l~~~L~sL~~L~Ls~N~Ls~L------~~L~~L~sL~ 261 (986)
.+|++..-+ .|...+.|+.+.+..|.|.. +. ..+..+++|+.|+|..|-++.- ..+..++.|+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 999998742 57778999999999998863 21 2345689999999999998873 3678888999
Q ss_pred EEEccCCCCCCCchhhh----hcCCCCCcEEEecCCCCCCCccc-chHHhhhcCCCceeecCCCccC
Q 001983 262 GLDISYNIISTFSELEF----LASLPYLLNLWLEGNPLCCSRWY-RAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 262 ~LdLS~N~Ls~lp~l~~----L~~L~~L~~L~Ls~NpLt~~~~~-r~~~~~~l~~L~lL~LdgN~Is 323 (986)
.|++++|.+..-..... -...|+|+.|.|.+|.|+..... ....+...+.|..|.|++|.+.
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 99999999987554321 23579999999999999866311 1122344678899999999995
No 39
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.45 E-value=1.8e-07 Score=97.48 Aligned_cols=118 Identities=27% Similarity=0.361 Sum_probs=82.9
Q ss_pred CCCeecCCCCCcCCccccccccccceeeccCCCccCCc-ccC-CCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEec
Q 001983 214 NLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL-RGI-ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLE 291 (986)
Q Consensus 214 ~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L-~~L-~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls 291 (986)
+...+||++|.|..++.+. .++.|.+|.|.+|+|+.| +.+ ..+++|..|.|.+|.|..+.++..+..+|+|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp-~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLP-HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCC-CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3444555555544444332 224555555555555554 222 3346778888888888887777788999999999999
Q ss_pred CCCCCCCcccchHHhhhcCCCceeecCCCccChhHHHHHHHHH
Q 001983 292 GNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLII 334 (986)
Q Consensus 292 ~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~~~~~~l~ 334 (986)
+||++....||..++..++.++ .||...++..++..++.++
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~--~LDF~kVt~~ER~~A~~~f 162 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLR--TLDFQKVTRKEREEAEVFF 162 (233)
T ss_pred CCchhcccCceeEEEEecCcce--EeehhhhhHHHHHHHHHHh
Confidence 9999999999998877665544 5677889999999998887
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.34 E-value=6.9e-07 Score=109.32 Aligned_cols=104 Identities=18% Similarity=0.209 Sum_probs=88.6
Q ss_pred CCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCC
Q 001983 88 SLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQW 167 (986)
Q Consensus 88 nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L 167 (986)
.++.|+|++|.+.+.+|..|..+++|+.|+|++|.+.+.+|..+..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l--------------------------------- 465 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI--------------------------------- 465 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCC---------------------------------
Confidence 47899999999999999999999999999999999998888766544
Q ss_pred CCccEEEccCCccc-cchhhhcCCCCCCEEECCCCCCCC-CC-CcCCc-CCCCeecCCCCC
Q 001983 168 NRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRKC-VNLKHLDLGFNN 224 (986)
Q Consensus 168 ~sL~~LdLS~N~Lt-~LP~sL~~L~~L~~LdLS~N~Ls~-L~-~L~~L-~~L~~LdLS~N~ 224 (986)
++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++ +| .+..+ .++..+++.+|.
T Consensus 466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 37899999999998 889999999999999999999985 44 44443 466788888885
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=2.6e-08 Score=118.08 Aligned_cols=132 Identities=20% Similarity=0.208 Sum_probs=103.5
Q ss_pred CCCEEECCCCCCCCCC-CcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcccC--CCCCCCCEEEccCC
Q 001983 192 AVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGI--ENLKSLEGLDISYN 268 (986)
Q Consensus 192 ~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L--~~L~sL~~LdLS~N 268 (986)
.|...+.++|.+..++ .+.-++.|+.|+|++|+++.+. ....+++|++|+|+.|.|+.+|.+ ..+. |..|.|++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 4666677888888775 7778899999999999999887 444568999999999999998744 3444 999999999
Q ss_pred CCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChhHHHHH
Q 001983 269 IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWER 330 (986)
Q Consensus 269 ~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~~~~ 330 (986)
.++.+.. +.+|.+|+.|||+.|-|.....+.+ +..+..|..|.|.|||+-|..-.++
T Consensus 243 ~l~tL~g---ie~LksL~~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNPl~c~p~hRa 299 (1096)
T KOG1859|consen 243 ALTTLRG---IENLKSLYGLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNPLCCAPWHRA 299 (1096)
T ss_pred HHHhhhh---HHhhhhhhccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCccccCHHHHH
Confidence 9988754 6788899999999999987754432 3345668899999999988654443
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=1.1e-06 Score=107.62 Aligned_cols=104 Identities=25% Similarity=0.258 Sum_probs=86.2
Q ss_pred CccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccc-cchhhhcCC
Q 001983 112 RLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLL 190 (986)
Q Consensus 112 nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt-~LP~sL~~L 190 (986)
.++.|+|++|.+.+.+|..+..+ ++|+.|+|++|.|. .+|..+..+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L---------------------------------~~L~~L~Ls~N~l~g~iP~~~~~l 465 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKL---------------------------------RHLQSINLSGNSIRGNIPPSLGSI 465 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCC---------------------------------CCCCEEECCCCcccCcCChHHhCC
Confidence 48899999999998888766544 47999999999998 899999999
Q ss_pred CCCCEEECCCCCCCC-CC-CcCCcCCCCeecCCCCCcCC-ccccccc-cccceeeccCCCcc
Q 001983 191 PAVETLDLSRNKFAK-VD-NLRKCVNLKHLDLGFNNLRS-IAAFSEV-SCHIVKLVLRNNAL 248 (986)
Q Consensus 191 ~~L~~LdLS~N~Ls~-L~-~L~~L~~L~~LdLS~N~Ls~-L~~l~~~-L~sL~~L~Ls~N~L 248 (986)
++|+.|+|++|++++ +| .+..+++|+.|+|++|.+++ +|..... +.++..+++.+|..
T Consensus 466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 999999999999996 45 78999999999999999985 4543322 34667888888853
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=8.7e-07 Score=75.40 Aligned_cols=59 Identities=36% Similarity=0.459 Sum_probs=41.7
Q ss_pred ccceeeccCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCC
Q 001983 236 CHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295 (986)
Q Consensus 236 ~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpL 295 (986)
|+|+.|+|++|+|+.++ .|..+++|++|++++|.|+.+++ ..+..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 35667777777777764 56777777777777777777654 5677777777777777764
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.14 E-value=1.2e-06 Score=74.49 Aligned_cols=58 Identities=38% Similarity=0.492 Sum_probs=45.5
Q ss_pred CCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCc
Q 001983 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNL 225 (986)
Q Consensus 168 ~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~L 225 (986)
++|+.|++++|+|+.+|. .|..+++|++|++++|.|+.++ .|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 367888888888887775 6777888888888888888764 677888888888888765
No 45
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=3.6e-07 Score=99.00 Aligned_cols=116 Identities=30% Similarity=0.432 Sum_probs=94.9
Q ss_pred cCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEec
Q 001983 212 CVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLE 291 (986)
Q Consensus 212 L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls 291 (986)
+.+.+.|++-++.|+.|.-. ..++.|+.|.|+-|+|+++..+..|++|+.|+|..|.|.++.++..+.++|+|+.|+|.
T Consensus 18 l~~vkKLNcwg~~L~DIsic-~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISIC-EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHHHH-HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 34556666777776665432 34577888888888888888889999999999999999999999999999999999999
Q ss_pred CCCCCCC--cccchHHhhhcCCCceeecCCCccChhHHHHH
Q 001983 292 GNPLCCS--RWYRAQVFSYFAHPAKLKVDGKEISTRELWER 330 (986)
Q Consensus 292 ~NpLt~~--~~~r~~~~~~l~~L~lL~LdgN~Is~~e~~~~ 330 (986)
.||.+.. ..|+..++..+++|+ .||+-+++..+...+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLk--KLDnv~VteeEle~A 135 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLK--KLDNVPVTEEELEEA 135 (388)
T ss_pred cCCcccccchhHHHHHHHHcccch--hccCccccHHHHHHH
Confidence 9998765 688999998886655 678999998887665
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.06 E-value=4e-06 Score=87.66 Aligned_cols=125 Identities=22% Similarity=0.265 Sum_probs=99.3
Q ss_pred cEEEccCCccccchhhhc-CCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCcc
Q 001983 171 SFVSCSCNRLVIMDESLQ-LLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNAL 248 (986)
Q Consensus 171 ~~LdLS~N~Lt~LP~sL~-~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~L 248 (986)
+.++|.+.++..+.. ++ .+.+...+||++|.|..++.|..++.|.+|.|++|+|+.+.+ +...+++|..|.|.+|+|
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 455555555554422 22 244678899999999999999999999999999999999977 445578999999999998
Q ss_pred CCc---ccCCCCCCCCEEEccCCCCCCCchh--hhhcCCCCCcEEEecCCCCC
Q 001983 249 TTL---RGIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLEGNPLC 296 (986)
Q Consensus 249 s~L---~~L~~L~sL~~LdLS~N~Ls~lp~l--~~L~~L~~L~~L~Ls~NpLt 296 (986)
..+ ..+..||.|+.|.+-+|.++..... -.+..+|+|+.||+++=...
T Consensus 101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 876 5788999999999999999875432 34678999999999875543
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.85 E-value=1.4e-05 Score=86.83 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=11.2
Q ss_pred CCCCCCccEEEeeCCCCCccchh
Q 001983 107 LLPFCRLKVLELRGCDLSTSAAK 129 (986)
Q Consensus 107 f~~L~nL~~LdLS~N~Lt~~lp~ 129 (986)
+.++|+|+..+||.|-+....|.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred HhcCCcceeeeccccccCcccch
Confidence 34445555555555555443333
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.76 E-value=1.8e-05 Score=99.98 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=53.5
Q ss_pred HHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccC
Q 001983 80 RRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (986)
Q Consensus 80 p~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N 145 (986)
+..|..+|.|+.|||++|.-.+.+|..++.|-+|++|+|++..+.. +|.++.+|..++.+.+..+
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhheeccccc
Confidence 3457889999999999888778899999999999999999999975 8888988887666555444
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.75 E-value=1.6e-05 Score=100.57 Aligned_cols=63 Identities=14% Similarity=0.069 Sum_probs=40.9
Q ss_pred CCCCcEEEccCCC--CCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCc
Q 001983 86 LTSLKVVSALPPP--ARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTN 148 (986)
Q Consensus 86 L~nLk~L~Ls~N~--Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~ 148 (986)
.++|+.|-+..|. +....+..|..++.|++|||++|.=.+.+|..++.|-+|..+.+.+..+.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS 608 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc
Confidence 4578888887776 44444445777888888888887665667777777765443333333333
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.75 E-value=1.6e-06 Score=85.93 Aligned_cols=106 Identities=23% Similarity=0.237 Sum_probs=52.2
Q ss_pred CccEEEccCCccccchhhhc---CCCCCCEEECCCCCCCCCC-CcC-CcCCCCeecCCCCCcCCccccccccccceeecc
Q 001983 169 RLSFVSCSCNRLVIMDESLQ---LLPAVETLDLSRNKFAKVD-NLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (986)
Q Consensus 169 sL~~LdLS~N~Lt~LP~sL~---~L~~L~~LdLS~N~Ls~L~-~L~-~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~L 243 (986)
.+..++|+.++|..+++... ....|+..+|++|.+..+| .|. ..+.++.|+|++|.|+.+|.....++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 45667777777776665433 3334444455555555544 222 223455555555555555544444444555555
Q ss_pred CCCccCCcc-cCCCCCCCCEEEccCCCCCCCc
Q 001983 244 RNNALTTLR-GIENLKSLEGLDISYNIISTFS 274 (986)
Q Consensus 244 s~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~lp 274 (986)
+.|.|...+ .+..+.+|-.|+...|.+..++
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 555444432 2333444444444444444443
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.3e-06 Score=95.51 Aligned_cols=175 Identities=21% Similarity=0.200 Sum_probs=106.2
Q ss_pred CCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccc-cchhhhcC
Q 001983 111 CRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQL 189 (986)
Q Consensus 111 ~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt-~LP~sL~~ 189 (986)
+.|++|||++..|+..- +..+ +. .+.+|+.|.+.+++|. .+...+..
T Consensus 185 sRlq~lDLS~s~it~st---l~~i-------Ls----------------------~C~kLk~lSlEg~~LdD~I~~~iAk 232 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVST---LHGI-------LS----------------------QCSKLKNLSLEGLRLDDPIVNTIAK 232 (419)
T ss_pred hhhHHhhcchhheeHHH---HHHH-------HH----------------------HHHhhhhccccccccCcHHHHHHhc
Confidence 57999999999887421 1111 11 2346777777777777 45456777
Q ss_pred CCCCCEEECCCC-CCCCCC---CcCCcCCCCeecCCCCCcCCcc--c-cccccccceeeccCCCc----cCCcc-cCCCC
Q 001983 190 LPAVETLDLSRN-KFAKVD---NLRKCVNLKHLDLGFNNLRSIA--A-FSEVSCHIVKLVLRNNA----LTTLR-GIENL 257 (986)
Q Consensus 190 L~~L~~LdLS~N-~Ls~L~---~L~~L~~L~~LdLS~N~Ls~L~--~-l~~~L~sL~~L~Ls~N~----Ls~L~-~L~~L 257 (986)
-.+|+.|+|+.+ .|+... -+..++.|..|+|+++.+..-. . ....-++|+.|+|+++. .+.+. -...+
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 778888888765 455432 4667788888888888765321 1 11223577888887752 22232 23567
Q ss_pred CCCCEEEccCCC-CCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCC
Q 001983 258 KSLEGLDISYNI-ISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGK 320 (986)
Q Consensus 258 ~sL~~LdLS~N~-Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN 320 (986)
|+|.+|||++|. |+. .....+..++.|++|.|+.|-...... .-.+...+.+..|++.|.
T Consensus 313 p~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~--~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPET--LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHH--eeeeccCcceEEEEeccc
Confidence 888888888763 444 444667778888888888775432211 111334455555555554
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=3.2e-05 Score=84.92 Aligned_cols=204 Identities=22% Similarity=0.203 Sum_probs=110.2
Q ss_pred cccccCCCCCCc--hhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCcc-chhhHHhhhhhhhhh
Q 001983 65 AYVSDLGDHRAL--EQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTS-AAKGLLELRHTLEKI 141 (986)
Q Consensus 65 l~vLdLs~~~~L--~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~-lp~~L~~L~~LL~LL 141 (986)
+..+||.+|..- .++...+.+||.|+.|+|+.|.+...+-.--..+.+|+.|-|.+..+.-. .-..+..++.+.++.
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence 345788887643 45677889999999999999998854432225678999999999887632 223455566666666
Q ss_pred hccCCCccchhhcccccccccCCCCCCCccEEEccCCccccchhh---hcCCCCCCEEECCCCCCCCCCCcCCcCCCCee
Q 001983 142 ICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDES---LQLLPAVETLDLSRNKFAKVDNLRKCVNLKHL 218 (986)
Q Consensus 142 L~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~s---L~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~L 218 (986)
++.|+ ++.+++..|.++..... +..++.+..+.++-|++.. .++++..+
T Consensus 153 mS~N~-----------------------~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r-----~Fpnv~sv 204 (418)
T KOG2982|consen 153 MSDNS-----------------------LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR-----IFPNVNSV 204 (418)
T ss_pred hccch-----------------------hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh-----hcccchhe
Confidence 66663 23333333322211111 1111112222222222211 12344444
Q ss_pred cCCCCCcCCccc--cccccccceeeccCCCccCCc---ccCCCCCCCCEEEccCCCCCCC-----chhhhhcCCCCCcEE
Q 001983 219 DLGFNNLRSIAA--FSEVSCHIVKLVLRNNALTTL---RGIENLKSLEGLDISYNIISTF-----SELEFLASLPYLLNL 288 (986)
Q Consensus 219 dLS~N~Ls~L~~--l~~~L~sL~~L~Ls~N~Ls~L---~~L~~L~sL~~LdLS~N~Ls~l-----p~l~~L~~L~~L~~L 288 (986)
-+..|.|..... .+..++.+..|+|+.|+|.+. ..+..++.|.-|.+++|.|.+- +-.-.++.+++++.|
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL 284 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence 444554443332 122234455566666666553 3556666666676766666541 111235677787777
Q ss_pred EecCCCCCCC
Q 001983 289 WLEGNPLCCS 298 (986)
Q Consensus 289 ~Ls~NpLt~~ 298 (986)
+=+ .|...
T Consensus 285 NGs--kIss~ 292 (418)
T KOG2982|consen 285 NGS--KISSR 292 (418)
T ss_pred cCc--ccchh
Confidence 544 66533
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.66 E-value=1.7e-05 Score=86.07 Aligned_cols=201 Identities=18% Similarity=0.130 Sum_probs=120.8
Q ss_pred ccCCeEEEecCCCcc-----cchhhhhccccchhcccCCCcccccccccc-CCCCCCchhhHHHhcCCCCCcEEEccCCC
Q 001983 25 IEGSIVLKLNPAGLH-----YVQSRLEALRELERLLAGAPLDYLRAYVSD-LGDHRALEQLRRILKLLTSLKVVSALPPP 98 (986)
Q Consensus 25 L~~l~~L~L~~~~L~-----~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLd-Ls~~~~L~~Lp~~L~~L~nLk~L~Ls~N~ 98 (986)
++.+.-++|+.|-+. .+...+.+-++|.......-+... +-| + ..++.-+-+.+-+||+|+.++|+.|.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr---~kde~--~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGR---DKDEL--YSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcc---cHHHH--HHHHHHHHHHHhcCCcceeeeccccc
Confidence 777888999988765 344444454555544321100000 000 0 11233344567889999999999999
Q ss_pred CCCCCCcC----CCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEE
Q 001983 99 ARDPTPLS----LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVS 174 (986)
Q Consensus 99 Ls~~lP~s----f~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~Ld 174 (986)
+....|.. ++.-+.|.+|.|++|.+..+.-.-++.- +.. +..| .....-+.|+.+.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigka---l~~-la~n----------------KKaa~kp~Le~vi 163 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKA---LFH-LAYN----------------KKAADKPKLEVVI 163 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHH---HHH-HHHH----------------hhhccCCCceEEE
Confidence 98766654 4566999999999998864322222211 100 1111 1122346899999
Q ss_pred ccCCccccchh-----hhcCCCCCCEEECCCCCCCC--C-----CCcCCcCCCCeecCCCCCcCCccc-----ccccccc
Q 001983 175 CSCNRLVIMDE-----SLQLLPAVETLDLSRNKFAK--V-----DNLRKCVNLKHLDLGFNNLRSIAA-----FSEVSCH 237 (986)
Q Consensus 175 LS~N~Lt~LP~-----sL~~L~~L~~LdLS~N~Ls~--L-----~~L~~L~~L~~LdLS~N~Ls~L~~-----l~~~L~s 237 (986)
+..|++...|. .+..-.+|+.+.+..|.|.. + -.+..+.+|+.|||..|.++.... ....++.
T Consensus 164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 99999985553 24444678888888888863 2 145566788888888887764332 2222344
Q ss_pred ceeeccCCCccCC
Q 001983 238 IVKLVLRNNALTT 250 (986)
Q Consensus 238 L~~L~Ls~N~Ls~ 250 (986)
|+.|.+..|-++.
T Consensus 244 lrEL~lnDClls~ 256 (388)
T COG5238 244 LRELRLNDCLLSN 256 (388)
T ss_pred hhhccccchhhcc
Confidence 5666665555544
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.62 E-value=6.4e-06 Score=81.69 Aligned_cols=132 Identities=20% Similarity=0.239 Sum_probs=99.2
Q ss_pred CCCEEECCCCCCCCCC----CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCcc-cCCCCCCCCEEEc
Q 001983 192 AVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDI 265 (986)
Q Consensus 192 ~L~~LdLS~N~Ls~L~----~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdL 265 (986)
.+..|+|+.++|-.++ .+.....|+..+|++|.+..+|+ +...++.++.|+|++|.|+.+| .+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 4567788888887653 45666778888999999998886 3444678999999999999986 7889999999999
Q ss_pred cCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChhHHHH
Q 001983 266 SYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWE 329 (986)
Q Consensus 266 S~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~~~ 329 (986)
+.|.|...|. .+..+.+|-.|+..+|.+...+ .. +-.-..+-+..+..+|+......+
T Consensus 108 ~~N~l~~~p~--vi~~L~~l~~Lds~~na~~eid---~d-l~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 108 RFNPLNAEPR--VIAPLIKLDMLDSPENARAEID---VD-LFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred ccCccccchH--HHHHHHhHHHhcCCCCccccCc---HH-HhccccHHHHHhcCCcccccCccc
Confidence 9999998874 4556888889999999886553 12 223344566677777887665544
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=7.8e-05 Score=60.06 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=28.6
Q ss_pred CccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCc
Q 001983 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNL 209 (986)
Q Consensus 169 sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L 209 (986)
+|++|++++|+|+.+|..+..|++|+.|++++|+|+.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~l 42 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISPL 42 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcCC
Confidence 57777777777777777677777777777777777765544
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.41 E-value=0.0001 Score=79.91 Aligned_cols=113 Identities=27% Similarity=0.260 Sum_probs=68.7
Q ss_pred CCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcc-cCCCCCCCCEEEccCCC
Q 001983 191 PAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNI 269 (986)
Q Consensus 191 ~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~N~ 269 (986)
..|+.|.+.+..++.+..+..+++|+.|.++.|.+..... ++ -...+|+|++|+|+.|+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~--------------------l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGG--------------------LEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCccccccc--------------------ceehhhhCCceeEEeecCCc
Confidence 3444444555555555555555555555555553221111 11 12344777777777777
Q ss_pred CCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChh
Q 001983 270 ISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (986)
Q Consensus 270 Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~ 325 (986)
|..+..+..+..+.+|..|++.+|+.+....|+..+|..++ ++..||+..+...
T Consensus 103 i~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~--~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 103 IKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP--SLKYLDGCDVDGE 156 (260)
T ss_pred cccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh--hhccccccccCCc
Confidence 76655555567777888889998888877788888887774 4455666666543
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=2.3e-05 Score=86.01 Aligned_cols=107 Identities=20% Similarity=0.161 Sum_probs=43.9
Q ss_pred hcCCCCCCEEECCCCCCCCC--C-CcCC-cCCCCeecCCCCC----cCCccccccccccceeeccCCCc-cCC--cccCC
Q 001983 187 LQLLPAVETLDLSRNKFAKV--D-NLRK-CVNLKHLDLGFNN----LRSIAAFSEVSCHIVKLVLRNNA-LTT--LRGIE 255 (986)
Q Consensus 187 L~~L~~L~~LdLS~N~Ls~L--~-~L~~-L~~L~~LdLS~N~----Ls~L~~l~~~L~sL~~L~Ls~N~-Ls~--L~~L~ 255 (986)
+..+..|..|+|+.+.+..- . .+.. -++|+.|+|++.. .+.+..+...+++|..|+|++|. |+. +..|.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 34445555555555544331 0 1111 1344455555431 11222233344555555555442 222 12344
Q ss_pred CCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCC
Q 001983 256 NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (986)
Q Consensus 256 ~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~N 293 (986)
.++.|++|.|+.+..-.-..+-.+...|.|.+|++.|+
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 45555555555443322111223344455555555443
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.35 E-value=0.00016 Score=58.27 Aligned_cols=36 Identities=42% Similarity=0.529 Sum_probs=15.4
Q ss_pred ceeeccCCCccCCccc-CCCCCCCCEEEccCCCCCCC
Q 001983 238 IVKLVLRNNALTTLRG-IENLKSLEGLDISYNIISTF 273 (986)
Q Consensus 238 L~~L~Ls~N~Ls~L~~-L~~L~sL~~LdLS~N~Ls~l 273 (986)
|+.|+|++|+|+.++. +..|++|+.|+|++|+|+++
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 4444444444444433 44444444444444444443
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.23 E-value=0.00019 Score=88.80 Aligned_cols=106 Identities=16% Similarity=0.071 Sum_probs=57.8
Q ss_pred CCCccEEEccCCccc--cchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccc--cccccccceeec
Q 001983 167 WNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA--FSEVSCHIVKLV 242 (986)
Q Consensus 167 L~sL~~LdLS~N~Lt--~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~--l~~~L~sL~~L~ 242 (986)
+|+|+.|.+++-.+. .+-..+.++|+|..||+|+.+++.+.+++.|++|+.|.+.+=.+..-.. ..+.+++|+.||
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD 226 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence 456666666655444 2223445566666666666666666666666666666665544443221 122346666666
Q ss_pred cCCCccCCc--------ccCCCCCCCCEEEccCCCCCC
Q 001983 243 LRNNALTTL--------RGIENLKSLEGLDISYNIIST 272 (986)
Q Consensus 243 Ls~N~Ls~L--------~~L~~L~sL~~LdLS~N~Ls~ 272 (986)
+|..+.... ..-..||+|+.||.|++.+..
T Consensus 227 IS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 227 ISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 665433321 223445666666666555543
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.18 E-value=0.00091 Score=77.78 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=80.8
Q ss_pred hcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhccccccccc
Q 001983 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (986)
Q Consensus 83 L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~ 162 (986)
+..+.+|+.|++++|.++. +|. -.++|+.|.+++|.--..+|..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L------------------------------- 92 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI------------------------------- 92 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh-------------------------------
Confidence 4557889999999887763 341 22469999998854322233211
Q ss_pred CCCCCCCccEEEccCC-ccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccc-ccccccee
Q 001983 163 DSPQWNRLSFVSCSCN-RLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFS-EVSCHIVK 240 (986)
Q Consensus 163 ~l~~L~sL~~LdLS~N-~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~-~~L~sL~~ 240 (986)
.++|+.|.+++| .+..+|. +|+.|+++.|.+..+..+. ++|+.|.+.+++........ ...++|+.
T Consensus 93 ----P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~L~~LP--ssLk~L~I~~~n~~~~~~lp~~LPsSLk~ 160 (426)
T PRK15386 93 ----PEGLEKLTVCHCPEISGLPE------SVRSLEIKGSATDSIKNVP--NGLTSLSINSYNPENQARIDNLISPSLKT 160 (426)
T ss_pred ----hhhhhheEccCccccccccc------ccceEEeCCCCCcccccCc--chHhheeccccccccccccccccCCcccE
Confidence 126788888887 6666654 4677777776655443221 35667776543211111111 12357888
Q ss_pred eccCCCccCCcc-cCCCCCCCCEEEccCCC
Q 001983 241 LVLRNNALTTLR-GIENLKSLEGLDISYNI 269 (986)
Q Consensus 241 L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~N~ 269 (986)
|++++|....+| .+. .+|+.|.++.|.
T Consensus 161 L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 161 LSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred EEecCCCcccCccccc--ccCcEEEecccc
Confidence 888877755443 222 477777777664
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.11 E-value=0.0024 Score=74.42 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=49.8
Q ss_pred CccEEEccC-CccccchhhhcCCCCCCEEECCCC-CCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCC
Q 001983 169 RLSFVSCSC-NRLVIMDESLQLLPAVETLDLSRN-KFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 246 (986)
Q Consensus 169 sL~~LdLS~-N~Lt~LP~sL~~L~~L~~LdLS~N-~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N 246 (986)
+|+.|.+++ +.++.+|..+ .++|+.|.+++| .+..+| ..|+.|++..|.+..++.+. ++|+.|.+.++
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~n~~~~L~~LP---ssLk~L~I~~~ 142 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSLEIKGSATDSIKNVP---NGLTSLSINSY 142 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceEEeCCCCCcccccCc---chHhheecccc
Confidence 455555554 3455555433 245666666655 443332 34555555555444333222 34555555332
Q ss_pred c-cC--CcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCC
Q 001983 247 A-LT--TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (986)
Q Consensus 247 ~-Ls--~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~N 293 (986)
+ +. .++. .-.++|+.|++++|....+|. .+. .+|+.|.++.|
T Consensus 143 n~~~~~~lp~-~LPsSLk~L~Is~c~~i~LP~--~LP--~SLk~L~ls~n 187 (426)
T PRK15386 143 NPENQARIDN-LISPSLKTLSLTGCSNIILPE--KLP--ESLQSITLHIE 187 (426)
T ss_pred cccccccccc-ccCCcccEEEecCCCcccCcc--ccc--ccCcEEEeccc
Confidence 2 11 1110 111456666666655444331 111 35666666554
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=7.8e-05 Score=81.36 Aligned_cols=80 Identities=25% Similarity=0.334 Sum_probs=61.9
Q ss_pred CCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccc--cccccceeeccC
Q 001983 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFS--EVSCHIVKLVLR 244 (986)
Q Consensus 167 L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~--~~L~sL~~L~Ls 244 (986)
+.+.+.|++.++.|+.| .....|+.|+.|.||-|.|+.+..|..|++|+.|+|..|.|..+..+. ..+++|+.|.|.
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 34677888999988876 456788899999999999998888888888888888888888776532 345666666666
Q ss_pred CCc
Q 001983 245 NNA 247 (986)
Q Consensus 245 ~N~ 247 (986)
.|.
T Consensus 97 ENP 99 (388)
T KOG2123|consen 97 ENP 99 (388)
T ss_pred cCC
Confidence 654
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.78 E-value=0.00093 Score=82.88 Aligned_cols=103 Identities=24% Similarity=0.305 Sum_probs=49.0
Q ss_pred CCccEEEccCCccc--cchhhh-cCCCCCCEEECCCCCCCCCC---CcCCcCCCCeecCCCCCcCCccccccccccceee
Q 001983 168 NRLSFVSCSCNRLV--IMDESL-QLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKL 241 (986)
Q Consensus 168 ~sL~~LdLS~N~Lt--~LP~sL-~~L~~L~~LdLS~N~Ls~L~---~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L 241 (986)
.+|++|++++...- .-|..+ ..+|+|+.|.+++-.+..-+ -..++++|..||+|+.+++.+.. ...+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G-IS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG-ISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH-HhccccHHHH
Confidence 36777777665332 112222 23566666666655443321 23344555555555555554422 2233555555
Q ss_pred ccCCCccCCc---ccCCCCCCCCEEEccCCCCC
Q 001983 242 VLRNNALTTL---RGIENLKSLEGLDISYNIIS 271 (986)
Q Consensus 242 ~Ls~N~Ls~L---~~L~~L~sL~~LdLS~N~Ls 271 (986)
.+.+=.+..- ..+..|++|+.||+|.....
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 5544444331 23444555555555544433
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.65 E-value=0.0088 Score=65.27 Aligned_cols=91 Identities=23% Similarity=0.207 Sum_probs=68.3
Q ss_pred ccccceeeccCCCccCCcccCCCCCCCCEEEccCCCCCCCchhh-hhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCC
Q 001983 234 VSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELE-FLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHP 312 (986)
Q Consensus 234 ~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~-~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L 312 (986)
.+..|+.|++.+..++++..+..+++|+.|.++.|.......+. ....+|+|++|++++|.|.....+++ +..+++|
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcch
Confidence 34678888888889999888999999999999999443222222 23456999999999999986544433 4577888
Q ss_pred ceeecCCCccChhH
Q 001983 313 AKLKVDGKEISTRE 326 (986)
Q Consensus 313 ~lL~LdgN~Is~~e 326 (986)
..|.+-.++++...
T Consensus 119 ~~Ldl~n~~~~~l~ 132 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLD 132 (260)
T ss_pred hhhhcccCCccccc
Confidence 88888888777543
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.28 E-value=0.042 Score=52.60 Aligned_cols=112 Identities=15% Similarity=0.302 Sum_probs=46.8
Q ss_pred CCCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-cccccccceeec
Q 001983 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLV 242 (986)
Q Consensus 167 L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~ 242 (986)
+.+|+.+.+.. .+..++. .|..+++|+.+.+..+ +..++ .|..++.|+.+.+.. .+..++. .+..+++|+.+.
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 44667777663 4665554 4666667777777664 55553 566666677777754 4444443 233356666666
Q ss_pred cCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCC
Q 001983 243 LRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYL 285 (986)
Q Consensus 243 Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L 285 (986)
+..+ +..++ .+..+ +|+.+.+.. .+..++. ..+.++++|
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~-~~F~~~~~l 128 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE-NAFKNCTKL 128 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT-B-SS-----GGG-----
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC-CccEECC-ccccccccC
Confidence 6554 44442 45555 666666554 3444433 344454444
No 66
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=95.03 E-value=0.0095 Score=70.65 Aligned_cols=89 Identities=39% Similarity=0.490 Sum_probs=64.4
Q ss_pred ccccceeeccCCCccCCcccC----CCCCCCCEEEccCC--CCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHH--
Q 001983 234 VSCHIVKLVLRNNALTTLRGI----ENLKSLEGLDISYN--IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQV-- 305 (986)
Q Consensus 234 ~L~sL~~L~Ls~N~Ls~L~~L----~~L~sL~~LdLS~N--~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~-- 305 (986)
..+.+..++|++|+|..+..+ ...|+|+.|+|++| .+.....+..++.+ .|+.|.|.|||++..-.++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccccchhhhHHHHH
Confidence 457888999999998887544 34589999999999 66665554444444 6899999999998763233322
Q ss_pred --hhhcCCCceeecCCCccChh
Q 001983 306 --FSYFAHPAKLKVDGKEISTR 325 (986)
Q Consensus 306 --~~~l~~L~lL~LdgN~Is~~ 325 (986)
-..| |+++.|||..+..+
T Consensus 295 ~i~~~F--PKL~~LDG~ev~~~ 314 (585)
T KOG3763|consen 295 AIRELF--PKLLRLDGVEVQPE 314 (585)
T ss_pred HHHHhc--chheeecCcccCcc
Confidence 2234 78889999988753
No 67
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.68 E-value=0.00092 Score=79.62 Aligned_cols=182 Identities=25% Similarity=0.191 Sum_probs=107.1
Q ss_pred CcEEEccCCCCCCCCC----cCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCC
Q 001983 89 LKVVSALPPPARDPTP----LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (986)
Q Consensus 89 Lk~L~Ls~N~Ls~~lP----~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l 164 (986)
|..|.|.+|.+..... ..+...+.|..|++++|.+.+.....+.+--. .+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~-------~~------------------- 142 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLR-------LP------------------- 142 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcc-------cc-------------------
Confidence 6777787887764332 34556788888888888887432222222110 00
Q ss_pred CCCCCccEEEccCCccc-----cchhhhcCCCCCCEEECCCCCCCCC------CCc----CCcCCCCeecCCCCCcCCcc
Q 001983 165 PQWNRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNKFAKV------DNL----RKCVNLKHLDLGFNNLRSIA 229 (986)
Q Consensus 165 ~~L~sL~~LdLS~N~Lt-----~LP~sL~~L~~L~~LdLS~N~Ls~L------~~L----~~L~~L~~LdLS~N~Ls~L~ 229 (986)
-..|++|.+..|.++ .+...+.....|+.|+++.|.+... ..+ ....++++|.|++|.++...
T Consensus 143 --~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~ 220 (478)
T KOG4308|consen 143 --QCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSS 220 (478)
T ss_pred --hHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHH
Confidence 013445555555555 3445555566777777777776431 122 34667777888877776321
Q ss_pred -----cccccccc-ceeeccCCCccCCc------ccCCCC-CCCCEEEccCCCCCCCchh---hhhcCCCCCcEEEecCC
Q 001983 230 -----AFSEVSCH-IVKLVLRNNALTTL------RGIENL-KSLEGLDISYNIISTFSEL---EFLASLPYLLNLWLEGN 293 (986)
Q Consensus 230 -----~l~~~L~s-L~~L~Ls~N~Ls~L------~~L~~L-~sL~~LdLS~N~Ls~lp~l---~~L~~L~~L~~L~Ls~N 293 (986)
......+. +..|++.+|++.+. +.+..+ +.+++++++.|.|+..... ..+..+++++.|.+++|
T Consensus 221 c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 221 CALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred HHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 11122233 55677888877653 355555 6778888888887764321 23456667888888888
Q ss_pred CCCCC
Q 001983 294 PLCCS 298 (986)
Q Consensus 294 pLt~~ 298 (986)
++...
T Consensus 301 ~l~~~ 305 (478)
T KOG4308|consen 301 PLTDY 305 (478)
T ss_pred ccccH
Confidence 87644
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.21 E-value=0.079 Score=50.73 Aligned_cols=42 Identities=10% Similarity=0.088 Sum_probs=23.3
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCc
Q 001983 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLST 125 (986)
Q Consensus 82 ~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~ 125 (986)
.|.++++|+.+.+.. .+......+|.++++|+.+.+.++ +..
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~ 48 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTS 48 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSC
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccc
Confidence 456677788888753 566566667778878888888775 544
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.29 E-value=0.0041 Score=74.23 Aligned_cols=162 Identities=22% Similarity=0.209 Sum_probs=115.2
Q ss_pred CCCCccEEEccCCccc-----cchhhhcCC-CCCCEEECCCCCCCCC------CCcCCcCCCCeecCCCCCcCCcc----
Q 001983 166 QWNRLSFVSCSCNRLV-----IMDESLQLL-PAVETLDLSRNKFAKV------DNLRKCVNLKHLDLGFNNLRSIA---- 229 (986)
Q Consensus 166 ~L~sL~~LdLS~N~Lt-----~LP~sL~~L-~~L~~LdLS~N~Ls~L------~~L~~L~~L~~LdLS~N~Ls~L~---- 229 (986)
....|..|++++|.+. .+-..+... ..|++|++..|.++.. ..+.....|+.|+++.|.+....
T Consensus 113 t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l 192 (478)
T KOG4308|consen 113 TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVL 192 (478)
T ss_pred ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHH
Confidence 3457888999999988 122233333 5678889988988863 25667899999999999885221
Q ss_pred -c-cc---cccccceeeccCCCccCCc------ccCCCCCC-CCEEEccCCCCCCCchh---hhhcCC-CCCcEEEecCC
Q 001983 230 -A-FS---EVSCHIVKLVLRNNALTTL------RGIENLKS-LEGLDISYNIISTFSEL---EFLASL-PYLLNLWLEGN 293 (986)
Q Consensus 230 -~-l~---~~L~sL~~L~Ls~N~Ls~L------~~L~~L~s-L~~LdLS~N~Ls~lp~l---~~L~~L-~~L~~L~Ls~N 293 (986)
. +. ....++++|.|.+|.++.. ..+...+. +..|++.+|.+.+.... ..+..+ +.++.++++.|
T Consensus 193 ~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n 272 (478)
T KOG4308|consen 193 SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN 272 (478)
T ss_pred hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC
Confidence 1 11 2356899999999998873 24566666 77899999999865211 234455 67899999999
Q ss_pred CCCCC-cccchHHhhhcCCCceeecCCCccChhHH
Q 001983 294 PLCCS-RWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (986)
Q Consensus 294 pLt~~-~~~r~~~~~~l~~L~lL~LdgN~Is~~e~ 327 (986)
.|+.. +......+...+.++.+.++.|++.....
T Consensus 273 si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 273 SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred CccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 99876 22233445566688999999999987653
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.24 E-value=0.079 Score=61.69 Aligned_cols=38 Identities=24% Similarity=0.158 Sum_probs=22.6
Q ss_pred cCCCCCcEEEccCCCCCCC--CCcCCCCCCCccEEEeeCC
Q 001983 84 KLLTSLKVVSALPPPARDP--TPLSLLPFCRLKVLELRGC 121 (986)
Q Consensus 84 ~~L~nLk~L~Ls~N~Ls~~--lP~sf~~L~nL~~LdLS~N 121 (986)
..+++|+.|.+..+.-... .-......++|+.|+++++
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 3467777777766543322 2234456677777777763
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.95 E-value=0.014 Score=63.00 Aligned_cols=87 Identities=15% Similarity=0.076 Sum_probs=69.0
Q ss_pred CcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCc
Q 001983 208 NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLL 286 (986)
Q Consensus 208 ~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~ 286 (986)
.+......+.||++.|++-.+...+..++.|..|+++.|.|..+| .+..+..++.+++..|..+..| ..+...|+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p--~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP--KSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC--ccccccCCcc
Confidence 455566777888888887777766666778888888888888775 6777777888888888888887 5678889999
Q ss_pred EEEecCCCCC
Q 001983 287 NLWLEGNPLC 296 (986)
Q Consensus 287 ~L~Ls~NpLt 296 (986)
++++.+|++.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 9999999875
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=89.38 E-value=0.21 Score=34.30 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=16.9
Q ss_pred CccEEEccCCccccchhhhcCC
Q 001983 169 RLSFVSCSCNRLVIMDESLQLL 190 (986)
Q Consensus 169 sL~~LdLS~N~Lt~LP~sL~~L 190 (986)
+|++|+|++|+|+.+|..|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4788899999888888776543
No 73
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.82 E-value=0.097 Score=60.64 Aligned_cols=127 Identities=22% Similarity=0.172 Sum_probs=66.1
Q ss_pred CCCCCCEEECCCCC-CCCC--CC-cCCcCCCCeecCCCCC-cCC--ccccccccccceeeccCCCccCC---c-ccCCCC
Q 001983 189 LLPAVETLDLSRNK-FAKV--DN-LRKCVNLKHLDLGFNN-LRS--IAAFSEVSCHIVKLVLRNNALTT---L-RGIENL 257 (986)
Q Consensus 189 ~L~~L~~LdLS~N~-Ls~L--~~-L~~L~~L~~LdLS~N~-Ls~--L~~l~~~L~sL~~L~Ls~N~Ls~---L-~~L~~L 257 (986)
.+..|+.|..++.. ++.. .. -.+..+|+.|-|+.++ ++. +..+...++.|+.+++..+.+.. + ..-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 34556666665543 2221 12 2344667777776663 332 22344455667777776664433 1 122456
Q ss_pred CCCCEEEccCCCCCCCchhhhh----cCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeec
Q 001983 258 KSLEGLDISYNIISTFSELEFL----ASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKV 317 (986)
Q Consensus 258 ~sL~~LdLS~N~Ls~lp~l~~L----~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~L 317 (986)
+.|+.|.|+++.+..-..+..+ ..+..|..|.|+++|...+.. ...+...++++.+.|
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~--Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT--LEHLSICRNLERIEL 433 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH--HHHHhhCcccceeee
Confidence 7777777776643321111112 245567777777777764432 233455566666543
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.56 E-value=0.21 Score=58.03 Aligned_cols=131 Identities=24% Similarity=0.204 Sum_probs=93.6
Q ss_pred CCCCccEEEccCC-ccc--cchhhhcCCCCCCEEECCCCC-CCCC--CC-cCCcCCCCeecCCCCCcCC---cccccccc
Q 001983 166 QWNRLSFVSCSCN-RLV--IMDESLQLLPAVETLDLSRNK-FAKV--DN-LRKCVNLKHLDLGFNNLRS---IAAFSEVS 235 (986)
Q Consensus 166 ~L~sL~~LdLS~N-~Lt--~LP~sL~~L~~L~~LdLS~N~-Ls~L--~~-L~~L~~L~~LdLS~N~Ls~---L~~l~~~L 235 (986)
.+..|++|..+++ .++ .+..--.+.++|+.|.++.++ ++.. .. -.+++.|+.|++..+.+.. +..+...+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 3567888888765 344 222224567899999999886 4432 22 2456899999999986542 44566678
Q ss_pred ccceeeccCCCcc-CCc--c----cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCC
Q 001983 236 CHIVKLVLRNNAL-TTL--R----GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (986)
Q Consensus 236 ~sL~~L~Ls~N~L-s~L--~----~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt 296 (986)
+.|+.|.|+++.+ ++. . .-..+..|..|.|++.....-..+..+..+++|+.++|-++.-.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 9999999998854 332 2 22456789999999998776666678889999999999887643
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=84.36 E-value=0.38 Score=33.03 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=12.2
Q ss_pred CccEEEeeCCCCCccchhhHH
Q 001983 112 RLKVLELRGCDLSTSAAKGLL 132 (986)
Q Consensus 112 nL~~LdLS~N~Lt~~lp~~L~ 132 (986)
+|++|||++|+|+ .+|..|.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4667777777776 3554443
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.66 E-value=0.075 Score=57.51 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=58.4
Q ss_pred hcCCCCCCEEECCCCCCCCCC-CcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcc-cCCCCCCCCEEE
Q 001983 187 LQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLD 264 (986)
Q Consensus 187 L~~L~~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~Ld 264 (986)
+......+.||++.|++..+. .|..++.|..|+++.|.+..+|..+.....+..+++.+|.++..| .+...+.++.++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 444556666777777766653 566667777777777777777765555566777777777777765 677777888877
Q ss_pred ccCCCCC
Q 001983 265 ISYNIIS 271 (986)
Q Consensus 265 LS~N~Ls 271 (986)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 7777644
No 77
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=80.08 E-value=0.84 Score=53.19 Aligned_cols=107 Identities=22% Similarity=0.231 Sum_probs=59.2
Q ss_pred CCCCCEEECCCC-CCCC--C-CCcCCcCCCCeecCCCC--CcCCcc----ccccccccceeeccCCCc-cCCc--ccCC-
Q 001983 190 LPAVETLDLSRN-KFAK--V-DNLRKCVNLKHLDLGFN--NLRSIA----AFSEVSCHIVKLVLRNNA-LTTL--RGIE- 255 (986)
Q Consensus 190 L~~L~~LdLS~N-~Ls~--L-~~L~~L~~L~~LdLS~N--~Ls~L~----~l~~~L~sL~~L~Ls~N~-Ls~L--~~L~- 255 (986)
.+.|+.|.+..+ .+.. + +....++.|+.|+++++ .+...+ .....+++|+.|+++.+. ++.. ..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 566666666554 3332 2 24455566777777652 111111 123335667777777766 5543 2222
Q ss_pred CCCCCCEEEccCCC-CCCCchhhhhcCCCCCcEEEecCCCCC
Q 001983 256 NLKSLEGLDISYNI-ISTFSELEFLASLPYLLNLWLEGNPLC 296 (986)
Q Consensus 256 ~L~sL~~LdLS~N~-Ls~lp~l~~L~~L~~L~~L~Ls~NpLt 296 (986)
.+++|+.|.+.++. +++..-......++.|+.|+|+++...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 36777777766665 555443344456777788888776654
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=78.70 E-value=1.3 Score=28.71 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=7.6
Q ss_pred CccEEEccCCccccch
Q 001983 169 RLSFVSCSCNRLVIMD 184 (986)
Q Consensus 169 sL~~LdLS~N~Lt~LP 184 (986)
+|+.|++++|+|+.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4666666666666554
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=76.76 E-value=1.5 Score=28.42 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=5.1
Q ss_pred CCCEEEccCCCCCC
Q 001983 259 SLEGLDISYNIIST 272 (986)
Q Consensus 259 sL~~LdLS~N~Ls~ 272 (986)
+|+.|+|++|+|+.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
No 80
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.72 E-value=2.1 Score=59.83 Aligned_cols=38 Identities=42% Similarity=0.466 Sum_probs=34.1
Q ss_pred EccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccc
Q 001983 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYR 302 (986)
Q Consensus 264 dLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r 302 (986)
||++|+|+.++. ..|..+++|+.|+|++|||.|+|.+.
T Consensus 1 DLSnN~LstLp~-g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEE-GICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccCh-HHhccCCCceEEEeeCCccccccccH
Confidence 689999999986 78889999999999999999999653
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=66.86 E-value=2.3 Score=29.46 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=14.0
Q ss_pred CCCccEEEeeCCCCCccchhhH
Q 001983 110 FCRLKVLELRGCDLSTSAAKGL 131 (986)
Q Consensus 110 L~nL~~LdLS~N~Lt~~lp~~L 131 (986)
+++|+.|+|++|.|+...+..|
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3678889999998876555444
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=65.22 E-value=5 Score=28.26 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=12.8
Q ss_pred CCccEEEccCCccccchhh
Q 001983 168 NRLSFVSCSCNRLVIMDES 186 (986)
Q Consensus 168 ~sL~~LdLS~N~Lt~LP~s 186 (986)
++|+.|+|++|+|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3567777777777776654
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=65.22 E-value=5 Score=28.26 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=12.8
Q ss_pred CCccEEEccCCccccchhh
Q 001983 168 NRLSFVSCSCNRLVIMDES 186 (986)
Q Consensus 168 ~sL~~LdLS~N~Lt~LP~s 186 (986)
++|+.|+|++|+|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3567777777777776654
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=63.53 E-value=6.3 Score=27.72 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=13.5
Q ss_pred CCCCCEEEccCCCCCCCch
Q 001983 257 LKSLEGLDISYNIISTFSE 275 (986)
Q Consensus 257 L~sL~~LdLS~N~Ls~lp~ 275 (986)
+++|+.|+|++|.|+.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3567777777777777764
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=63.53 E-value=6.3 Score=27.72 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=13.5
Q ss_pred CCCCCEEEccCCCCCCCch
Q 001983 257 LKSLEGLDISYNIISTFSE 275 (986)
Q Consensus 257 L~sL~~LdLS~N~Ls~lp~ 275 (986)
+++|+.|+|++|.|+.+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3567777777777777764
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.98 E-value=6.3 Score=47.71 Aligned_cols=75 Identities=20% Similarity=0.161 Sum_probs=52.8
Q ss_pred CCCCCCCEEEccCCCCCCCchhhhh-cCCCCCcEEEecCC--CCCCCcccchHHhhhcCCCceeecCCCccChhHHHHHH
Q 001983 255 ENLKSLEGLDISYNIISTFSELEFL-ASLPYLLNLWLEGN--PLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQ 331 (986)
Q Consensus 255 ~~L~sL~~LdLS~N~Ls~lp~l~~L-~~L~~L~~L~Ls~N--pLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~~~~~ 331 (986)
.+.+.+..++|++|+|..+..+..+ ...|+|+.|+|++| .+....++.. + ....|+.+.++|||+...-...++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~-k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--L-KGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--h-cCCCHHHeeecCCccccchhhhHH
Confidence 4567889999999999988765444 35789999999999 5543333211 1 234578999999999765444443
Q ss_pred H
Q 001983 332 L 332 (986)
Q Consensus 332 ~ 332 (986)
.
T Consensus 292 y 292 (585)
T KOG3763|consen 292 Y 292 (585)
T ss_pred H
Confidence 3
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.81 E-value=1.3 Score=47.40 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=17.6
Q ss_pred CCCEEECCCCCCCC--CCCcCCcCCCCeecCCCC
Q 001983 192 AVETLDLSRNKFAK--VDNLRKCVNLKHLDLGFN 223 (986)
Q Consensus 192 ~L~~LdLS~N~Ls~--L~~L~~L~~L~~LdLS~N 223 (986)
.++.++-++..|.. +..+..++.|+.|.+.++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 35556666665553 345555556665555554
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.46 E-value=9.2 Score=41.13 Aligned_cols=81 Identities=21% Similarity=0.165 Sum_probs=50.0
Q ss_pred ccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCC-CCcCCC-CCCCccEEEeeCC-CCCccchhhHHhhhhhh
Q 001983 62 YLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDP-TPLSLL-PFCRLKVLELRGC-DLSTSAAKGLLELRHTL 138 (986)
Q Consensus 62 ~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~-lP~sf~-~L~nL~~LdLS~N-~Lt~~lp~~L~~L~~LL 138 (986)
...++.+|-+++....+=-+.+.+++.|+.|.|.++.-.+. .-..++ ..++|+.|+|++| +||+.....+..+++|.
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 33445566666554433345677888888888877663311 111122 3589999999988 57776666677776655
Q ss_pred hhhh
Q 001983 139 EKII 142 (986)
Q Consensus 139 ~LLL 142 (986)
.+.+
T Consensus 180 ~L~l 183 (221)
T KOG3864|consen 180 RLHL 183 (221)
T ss_pred HHHh
Confidence 4443
No 89
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=52.83 E-value=23 Score=32.91 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=54.4
Q ss_pred cceEEEEEecCCcccceeEEEEeecCCeeEEEEEeeeecCCcccc--cccccccchhhhHHhhhc--cceEEEEEeeCC
Q 001983 827 QYTVCWILEQDFMHRGREVAVLRSSENKFYVLLFGVTVDGTGSIL--NLLGCHKIEDIREVLIGL--GLQVLRVSTEMG 901 (986)
Q Consensus 827 ~~~~~~~~~~~~~~~~~e~~~l~ss~~k~~~ll~~~~~d~~~~~~--~~l~~~~~~~~~~v~~g~--glq~~r~~~~~~ 901 (986)
+-|+||.|-..-+.+. .| -.-.+.-+||=|.+-. -.|-|+ +=|.--|++.+++.+||= =-||+||--+.|
T Consensus 6 ~lafcy~~P~v~dvv~-~V--v~i~d~~~YV~LleY~--iegmIl~~selsr~rirsi~kllVGk~e~v~ViRVDk~KG 79 (86)
T PHA02858 6 DLAFCYVFPNINEVTK-GI--VFVKDNIFYVKLIDYG--LEALIVNYVNVNADRAEKLKKKLVGKTINVQVIRTDKLKG 79 (86)
T ss_pred eeEEEEecCCCCeEEE-EE--EEEeccEEEEEEecCc--cceEEecHHHHhHHHHHhhhhhhcCCeeEEEEEEECCCCC
Confidence 5689999999888876 44 4567899999999985 445554 667788999999999773 468888876665
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=51.36 E-value=13 Score=27.01 Aligned_cols=15 Identities=53% Similarity=0.784 Sum_probs=7.2
Q ss_pred CCCEEECCCCCCCCC
Q 001983 192 AVETLDLSRNKFAKV 206 (986)
Q Consensus 192 ~L~~LdLS~N~Ls~L 206 (986)
+|+.|+|+.|+|+.+
T Consensus 3 ~L~~L~L~~NkI~~I 17 (26)
T smart00365 3 NLEELDLSQNKIKKI 17 (26)
T ss_pred ccCEEECCCCcccee
Confidence 444455555544443
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=44.76 E-value=14 Score=26.76 Aligned_cols=17 Identities=41% Similarity=0.669 Sum_probs=8.7
Q ss_pred CCCCeecCCCCCcCCcc
Q 001983 213 VNLKHLDLGFNNLRSIA 229 (986)
Q Consensus 213 ~~L~~LdLS~N~Ls~L~ 229 (986)
.+|+.|+|++|+|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 34555555555554443
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=41.15 E-value=15 Score=26.83 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=11.4
Q ss_pred CccEEEccCCccccchh
Q 001983 169 RLSFVSCSCNRLVIMDE 185 (986)
Q Consensus 169 sL~~LdLS~N~Lt~LP~ 185 (986)
+|+.|++++|+|+.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56667777777776664
No 93
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=38.54 E-value=20 Score=26.24 Aligned_cols=18 Identities=33% Similarity=0.552 Sum_probs=12.8
Q ss_pred CCCCEEEccCCCCCCCch
Q 001983 258 KSLEGLDISYNIISTFSE 275 (986)
Q Consensus 258 ~sL~~LdLS~N~Ls~lp~ 275 (986)
++|+.|++++|+|+.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 457777777777777764
No 94
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=35.54 E-value=28 Score=25.30 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=13.1
Q ss_pred CCccEEEeeCCCCCccc
Q 001983 111 CRLKVLELRGCDLSTSA 127 (986)
Q Consensus 111 ~nL~~LdLS~N~Lt~~l 127 (986)
++|++|+|++|.|....
T Consensus 2 ~~L~~LdL~~N~i~~~G 18 (28)
T smart00368 2 PSLRELDLSNNKLGDEG 18 (28)
T ss_pred CccCEEECCCCCCCHHH
Confidence 57889999999887533
No 95
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=35.10 E-value=32 Score=33.52 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=23.0
Q ss_pred EEEEEeeCCceEEEEeccHHHHHHHhheee
Q 001983 893 VLRVSTEMGATYLLMTRSIEKSRQLFCTLQ 922 (986)
Q Consensus 893 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (986)
|.||...+|..|||-|.+.|+..+=+..|+
T Consensus 86 VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN 115 (119)
T PF15410_consen 86 VFRLRTADGSEYLFQASDEEEMNEWIDAIN 115 (119)
T ss_dssp EEEEE-TTS-EEEEE-SSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCEEEEECCCHHHHHHHHHHHh
Confidence 789999999999999999999887665443
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=31.26 E-value=38 Score=48.44 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=42.9
Q ss_pred EecCCCCCCCcccchHHhhhcCCCceeecCCCccChhHHHHHHHHHHhhcC----CCCCCCccCCCC
Q 001983 289 WLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLIIARRQK----RPAGFGFYSPAK 351 (986)
Q Consensus 289 ~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~~~~~~l~~~~~~----~p~~~~~~~P~~ 351 (986)
+|++|.|...+ ...|..++.|+.|.|++||+.|++...+...+..... .+....|..|..
T Consensus 1 DLSnN~LstLp---~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~ 64 (2740)
T TIGR00864 1 DISNNKISTIE---EGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGA 64 (2740)
T ss_pred CCCCCcCCccC---hHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChH
Confidence 58899998654 5778889999999999999999997765333333221 234556776653
Done!