Query 001983
Match_columns 986
No_of_seqs 591 out of 3768
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:23:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o6n_A APL1; leucine-rich repe 99.9 1.2E-24 4.2E-29 244.3 18.6 294 25-328 44-357 (390)
2 3v47_A TOLL-like receptor 5B a 99.9 1.7E-24 5.7E-29 246.9 17.8 300 24-327 28-412 (455)
3 3oja_B Anopheles plasmodium-re 99.9 4.4E-24 1.5E-28 254.2 19.1 295 25-329 50-364 (597)
4 2id5_A Lingo-1, leucine rich r 99.9 3.3E-24 1.1E-28 246.8 16.8 279 24-329 30-339 (477)
5 4fmz_A Internalin; leucine ric 99.9 9E-23 3.1E-27 224.7 24.6 276 24-324 42-325 (347)
6 2id5_A Lingo-1, leucine rich r 99.9 1.4E-23 4.7E-28 241.6 18.5 287 24-324 54-357 (477)
7 3zyi_A Leucine-rich repeat-con 99.9 1.2E-23 4E-28 241.7 17.0 238 76-329 66-309 (452)
8 3zyj_A Leucine-rich repeat-con 99.9 1E-23 3.6E-28 241.3 16.1 241 75-331 54-300 (440)
9 3t6q_A CD180 antigen; protein- 99.9 3.1E-23 1.1E-27 245.2 19.8 313 27-353 255-594 (606)
10 4fmz_A Internalin; leucine ric 99.9 3.2E-22 1.1E-26 220.3 24.4 274 25-323 65-346 (347)
11 3zyj_A Leucine-rich repeat-con 99.9 4E-23 1.4E-27 236.5 16.9 246 30-301 47-297 (440)
12 3zyi_A Leucine-rich repeat-con 99.9 5.1E-23 1.7E-27 236.4 17.6 227 65-301 77-308 (452)
13 4eco_A Uncharacterized protein 99.9 2.5E-23 8.7E-28 250.0 15.4 288 28-323 83-470 (636)
14 2z7x_B TOLL-like receptor 1, v 99.9 1E-22 3.5E-27 236.6 20.0 160 165-331 321-489 (520)
15 3v47_A TOLL-like receptor 5B a 99.9 9.9E-23 3.4E-27 232.2 17.8 275 25-300 53-412 (455)
16 3rgz_A Protein brassinosteroid 99.9 4.9E-23 1.7E-27 252.3 16.3 246 65-324 396-718 (768)
17 4ecn_A Leucine-rich repeat pro 99.9 1.5E-22 5.1E-27 251.7 20.0 289 28-323 325-710 (876)
18 1xku_A Decorin; proteoglycan, 99.9 3.4E-22 1.2E-26 219.4 20.6 267 27-324 32-307 (330)
19 4eco_A Uncharacterized protein 99.9 3.4E-23 1.2E-27 248.9 13.6 230 79-323 239-501 (636)
20 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-22 4.3E-27 236.9 17.2 155 167-327 333-514 (549)
21 1ziw_A TOLL-like receptor 3; i 99.9 4E-22 1.4E-26 239.1 21.8 296 28-327 250-626 (680)
22 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-23 4.7E-28 230.5 8.0 245 64-324 51-305 (313)
23 2z66_A Variable lymphocyte rec 99.9 1.5E-22 5.1E-27 219.7 14.8 237 76-328 19-266 (306)
24 1ozn_A Reticulon 4 receptor; N 99.9 2.5E-22 8.7E-27 216.0 15.6 205 86-300 31-242 (285)
25 1o6v_A Internalin A; bacterial 99.9 1E-21 3.5E-26 226.4 21.5 269 25-324 45-323 (466)
26 2ft3_A Biglycan; proteoglycan, 99.9 4.9E-22 1.7E-26 218.6 17.7 263 27-324 34-308 (332)
27 3t6q_A CD180 antigen; protein- 99.9 1.2E-21 4E-26 231.8 21.7 125 26-150 57-194 (606)
28 4ecn_A Leucine-rich repeat pro 99.9 7.4E-22 2.5E-26 245.5 20.7 291 24-325 489-842 (876)
29 1ozn_A Reticulon 4 receptor; N 99.9 8.8E-22 3E-26 211.8 18.4 232 90-337 14-252 (285)
30 1xku_A Decorin; proteoglycan, 99.9 5.6E-22 1.9E-26 217.7 17.2 252 51-324 18-277 (330)
31 1ogq_A PGIP-2, polygalacturona 99.9 1.6E-23 5.3E-28 230.0 4.2 244 27-298 51-306 (313)
32 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-22 5.7E-27 221.7 11.8 236 68-327 15-254 (317)
33 3vq2_A TLR4, TOLL-like recepto 99.9 2.4E-22 8.3E-27 237.5 13.6 271 25-330 284-565 (606)
34 1o6v_A Internalin A; bacterial 99.9 2.9E-21 9.9E-26 222.6 22.2 262 23-324 65-345 (466)
35 2ft3_A Biglycan; proteoglycan, 99.9 8.7E-22 3E-26 216.7 16.8 237 66-325 36-279 (332)
36 3rgz_A Protein brassinosteroid 99.9 4.5E-22 1.5E-26 243.9 15.8 225 86-324 393-694 (768)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.6E-21 5.5E-26 229.8 19.9 161 165-331 350-518 (562)
38 2z66_A Variable lymphocyte rec 99.9 1.3E-22 4.5E-27 220.1 9.3 267 29-323 10-287 (306)
39 3vq2_A TLR4, TOLL-like recepto 99.9 9.6E-22 3.3E-26 232.4 17.3 150 169-323 308-461 (606)
40 2z80_A TOLL-like receptor 2, v 99.9 4.4E-22 1.5E-26 220.9 13.4 270 30-327 35-318 (353)
41 1ziw_A TOLL-like receptor 3; i 99.9 9.6E-22 3.3E-26 235.9 16.2 269 24-300 327-626 (680)
42 4g8a_A TOLL-like receptor 4; l 99.9 8.4E-21 2.9E-25 223.1 23.8 143 208-354 464-615 (635)
43 3o6n_A APL1; leucine-rich repe 99.9 1.9E-21 6.3E-26 218.4 17.0 201 83-296 65-285 (390)
44 2z81_A CD282 antigen, TOLL-lik 99.9 6.3E-21 2.2E-25 222.5 20.5 288 25-323 25-464 (549)
45 2z63_A TOLL-like receptor 4, v 99.9 4E-21 1.4E-25 224.6 18.7 157 167-327 346-535 (570)
46 1p9a_G Platelet glycoprotein I 99.9 8.5E-21 2.9E-25 206.7 18.7 202 83-300 6-212 (290)
47 3oja_B Anopheles plasmodium-re 99.9 3.7E-21 1.3E-25 229.0 17.0 226 82-324 70-338 (597)
48 3oja_A Leucine-rich immune mol 99.8 1.8E-21 6.1E-26 227.1 12.6 218 86-327 33-254 (487)
49 2z63_A TOLL-like receptor 4, v 99.8 5.2E-21 1.8E-25 223.6 16.4 154 166-323 280-458 (570)
50 1wwl_A Monocyte differentiatio 99.8 1.2E-21 4.2E-26 214.4 10.0 202 85-324 93-310 (312)
51 2z7x_B TOLL-like receptor 1, v 99.8 1.9E-20 6.4E-25 217.6 20.1 97 26-125 21-129 (520)
52 4fcg_A Uncharacterized protein 99.8 4.6E-21 1.6E-25 212.1 13.4 216 78-297 95-315 (328)
53 2z62_A TOLL-like receptor 4, v 99.8 7.4E-21 2.5E-25 203.6 13.9 202 88-299 29-240 (276)
54 3j0a_A TOLL-like receptor 5; m 99.8 2.3E-20 8E-25 231.0 20.1 291 24-323 22-394 (844)
55 2o6q_A Variable lymphocyte rec 99.8 3.5E-20 1.2E-24 198.5 18.4 196 68-300 21-222 (270)
56 4fcg_A Uncharacterized protein 99.8 1.6E-20 5.4E-25 207.8 15.8 224 85-324 79-315 (328)
57 2z80_A TOLL-like receptor 2, v 99.8 1.4E-21 4.9E-26 216.7 7.3 253 24-300 50-318 (353)
58 3o53_A Protein LRIM1, AGAP0063 99.8 6.9E-22 2.4E-26 216.8 4.0 228 66-317 37-269 (317)
59 3oja_A Leucine-rich immune mol 99.8 1.6E-21 5.5E-26 227.5 6.8 236 32-299 13-253 (487)
60 1h6u_A Internalin H; cell adhe 99.8 3E-20 1E-24 203.7 14.0 194 86-299 40-233 (308)
61 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 9.7E-20 3.3E-24 214.6 18.3 128 188-323 350-486 (562)
62 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-19 8.7E-24 215.5 22.2 256 27-331 41-305 (622)
63 3j0a_A TOLL-like receptor 5; m 99.8 1.4E-19 4.9E-24 223.9 20.5 270 23-298 45-396 (844)
64 3bz5_A Internalin-J, INLJ; leu 99.8 3.3E-19 1.1E-23 206.5 20.8 252 25-322 41-298 (457)
65 1wwl_A Monocyte differentiatio 99.8 1.4E-21 4.8E-26 213.9 0.5 217 68-325 48-289 (312)
66 2o6q_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 190.4 19.1 200 87-326 16-221 (270)
67 1jl5_A Outer protein YOPM; leu 99.8 1.3E-19 4.4E-24 209.8 13.9 259 25-324 10-291 (454)
68 4g8a_A TOLL-like receptor 4; l 99.8 5.6E-19 1.9E-23 207.6 18.4 85 236-324 469-556 (635)
69 2xwt_C Thyrotropin receptor; s 99.8 1.2E-19 4.1E-24 190.4 10.6 201 76-320 23-236 (239)
70 1jl5_A Outer protein YOPM; leu 99.8 1.3E-18 4.5E-23 201.3 20.2 221 65-324 133-371 (454)
71 2z62_A TOLL-like receptor 4, v 99.8 2.7E-19 9.4E-24 191.4 13.1 219 30-273 11-239 (276)
72 2ca6_A RAN GTPase-activating p 99.8 1.6E-20 5.5E-25 210.8 3.5 247 33-326 16-319 (386)
73 3bz5_A Internalin-J, INLJ; leu 99.8 1.8E-18 6E-23 200.4 20.4 220 68-323 47-267 (457)
74 1p9a_G Platelet glycoprotein I 99.8 1.6E-18 5.5E-23 188.7 17.0 204 106-327 5-212 (290)
75 1h6t_A Internalin B; cell adhe 99.8 8.9E-19 3E-23 190.6 14.4 198 84-325 43-240 (291)
76 4glp_A Monocyte differentiatio 99.8 3.5E-19 1.2E-23 194.5 10.6 203 85-325 89-309 (310)
77 3rfs_A Internalin B, repeat mo 99.8 1.4E-18 4.9E-23 186.4 15.2 179 83-299 37-221 (272)
78 3m19_A Variable lymphocyte rec 99.8 4.3E-18 1.5E-22 180.3 17.8 175 87-298 14-194 (251)
79 3g06_A SSPH2 (leucine-rich rep 99.8 3.9E-18 1.3E-22 205.2 18.4 231 25-298 60-299 (622)
80 1h6u_A Internalin H; cell adhe 99.8 2.5E-18 8.6E-23 188.4 14.9 206 94-324 26-231 (308)
81 2ca6_A RAN GTPase-activating p 99.8 5.4E-19 1.9E-23 198.3 7.5 224 75-326 20-290 (386)
82 4glp_A Monocyte differentiatio 99.7 1.3E-18 4.3E-23 190.1 7.3 196 65-297 93-308 (310)
83 1z7x_W Ribonuclease inhibitor; 99.7 2E-18 6.7E-23 196.8 7.4 288 25-326 55-414 (461)
84 1z7x_W Ribonuclease inhibitor; 99.7 1.4E-18 4.8E-23 198.0 5.4 281 25-326 27-357 (461)
85 3goz_A Leucine-rich repeat-con 99.7 3.1E-18 1.1E-22 191.2 7.7 252 70-327 5-301 (362)
86 1m9s_A Internalin B; cell inva 99.7 1.2E-17 4.3E-22 200.2 13.5 176 83-300 39-214 (605)
87 2xwt_C Thyrotropin receptor; s 99.7 2E-17 6.9E-22 173.5 11.9 181 102-324 25-219 (239)
88 3m19_A Variable lymphocyte rec 99.7 6.1E-17 2.1E-21 171.5 15.2 170 68-273 19-194 (251)
89 3rfs_A Internalin B, repeat mo 99.7 1.5E-16 5.1E-21 170.7 17.2 196 89-326 21-221 (272)
90 3cvr_A Invasion plasmid antige 99.7 7E-17 2.4E-21 192.5 14.6 182 87-327 59-247 (571)
91 4ay9_X Follicle-stimulating ho 99.7 3.8E-17 1.3E-21 181.8 11.5 230 74-324 19-259 (350)
92 1xeu_A Internalin C; cellular 99.7 1E-17 3.5E-22 179.8 6.6 171 86-299 18-188 (263)
93 3goz_A Leucine-rich repeat-con 99.7 1E-17 3.5E-22 187.1 6.7 212 81-298 44-299 (362)
94 1h6t_A Internalin B; cell adhe 99.7 1.6E-16 5.5E-21 172.9 14.3 186 92-324 29-214 (291)
95 1dce_A Protein (RAB geranylger 99.7 5.5E-19 1.9E-23 210.3 -6.0 198 108-317 346-567 (567)
96 2ast_B S-phase kinase-associat 99.7 3.4E-17 1.2E-21 179.0 7.2 213 67-293 51-282 (336)
97 2xot_A Amphoterin-induced prot 99.7 1.2E-16 4E-21 178.8 11.3 176 90-301 21-207 (361)
98 3e6j_A Variable lymphocyte rec 99.7 6.6E-16 2.3E-20 162.1 14.5 155 168-323 40-201 (229)
99 1m9s_A Internalin B; cell inva 99.7 4.2E-16 1.4E-20 186.9 14.7 165 69-274 49-213 (605)
100 1xeu_A Internalin C; cellular 99.6 5.7E-16 1.9E-20 166.3 13.0 170 133-324 17-186 (263)
101 2v9t_B SLIT homolog 2 protein 99.6 1.2E-15 4.2E-20 159.2 14.0 131 169-300 33-169 (220)
102 2v9t_B SLIT homolog 2 protein 99.6 1.2E-15 4.3E-20 159.2 12.8 156 171-332 14-174 (220)
103 3cvr_A Invasion plasmid antige 99.6 2.3E-15 7.9E-20 179.4 16.7 162 112-324 60-221 (571)
104 4ezg_A Putative uncharacterize 99.6 1E-15 3.6E-20 156.4 11.1 124 169-296 67-194 (197)
105 2ast_B S-phase kinase-associat 99.6 5E-16 1.7E-20 169.8 8.6 200 85-298 91-308 (336)
106 4ay9_X Follicle-stimulating ho 99.6 5.6E-16 1.9E-20 172.3 9.0 235 29-293 12-256 (350)
107 2xot_A Amphoterin-induced prot 99.6 2.7E-15 9.2E-20 167.7 14.4 158 169-330 40-209 (361)
108 2v70_A SLIT-2, SLIT homolog 2 99.6 3.2E-15 1.1E-19 156.1 13.5 129 170-299 34-169 (220)
109 2v70_A SLIT-2, SLIT homolog 2 99.6 2.9E-15 9.9E-20 156.4 12.6 156 170-331 13-174 (220)
110 4ezg_A Putative uncharacterize 99.6 2E-15 6.7E-20 154.3 10.1 149 167-324 43-195 (197)
111 2o6s_A Variable lymphocyte rec 99.6 2.6E-15 8.9E-20 154.1 10.2 149 86-272 27-179 (208)
112 3e6j_A Variable lymphocyte rec 99.6 9E-15 3.1E-19 153.4 14.4 151 169-326 20-175 (229)
113 1dce_A Protein (RAB geranylger 99.6 3E-17 1E-21 195.4 -5.8 200 84-290 346-567 (567)
114 2o6s_A Variable lymphocyte rec 99.6 1.4E-14 4.8E-19 148.6 12.9 131 168-299 28-164 (208)
115 2wfh_A SLIT homolog 2 protein 99.5 3.8E-14 1.3E-18 145.3 12.2 129 170-301 12-144 (193)
116 1ds9_A Outer arm dynein; leuci 99.5 2.4E-16 8.2E-21 161.3 -4.5 162 169-332 24-194 (198)
117 1w8a_A SLIT protein; signaling 99.5 6E-14 2E-18 143.3 11.9 129 170-301 10-144 (192)
118 2ell_A Acidic leucine-rich nuc 99.5 3.1E-14 1.1E-18 141.2 9.1 133 167-299 23-163 (168)
119 3ogk_B Coronatine-insensitive 99.5 1.2E-14 4E-19 170.9 6.7 157 167-325 341-528 (592)
120 4b8c_D Glucose-repressible alc 99.5 1.8E-14 6.2E-19 176.2 6.8 191 29-268 176-369 (727)
121 3ogk_B Coronatine-insensitive 99.5 1.2E-14 4.1E-19 170.8 4.8 285 26-322 220-550 (592)
122 1a9n_A U2A', U2A'; complex (nu 99.5 6.2E-14 2.1E-18 140.6 8.8 134 189-323 17-153 (176)
123 2je0_A Acidic leucine-rich nuc 99.5 8.7E-14 3E-18 135.3 8.5 125 168-292 17-149 (149)
124 2o6r_A Variable lymphocyte rec 99.4 5.3E-13 1.8E-17 133.6 13.2 129 169-300 8-141 (177)
125 1a9n_A U2A', U2A'; complex (nu 99.4 1.7E-13 5.9E-18 137.4 8.1 131 166-296 17-153 (176)
126 2wfh_A SLIT homolog 2 protein 99.4 9.8E-13 3.4E-17 134.8 13.7 155 194-353 13-170 (193)
127 2ell_A Acidic leucine-rich nuc 99.4 2.8E-13 9.6E-18 134.3 8.7 135 188-323 21-160 (168)
128 2p1m_B Transport inhibitor res 99.4 5.6E-14 1.9E-18 165.0 3.7 206 109-326 287-522 (594)
129 2je0_A Acidic leucine-rich nuc 99.4 7.5E-13 2.6E-17 128.6 8.2 129 189-318 15-148 (149)
130 1w8a_A SLIT protein; signaling 99.4 4.4E-12 1.5E-16 129.4 13.4 132 194-331 11-147 (192)
131 4b8c_D Glucose-repressible alc 99.3 1.4E-12 4.6E-17 159.7 10.5 131 166-297 222-355 (727)
132 1ds9_A Outer arm dynein; leuci 99.3 9E-15 3.1E-19 149.5 -8.9 83 213-298 93-187 (198)
133 2p1m_B Transport inhibitor res 99.3 2.9E-13 1E-17 158.9 2.1 235 78-321 280-542 (594)
134 3sb4_A Hypothetical leucine ri 99.3 4.3E-12 1.5E-16 139.7 8.1 99 212-316 225-327 (329)
135 3sb4_A Hypothetical leucine ri 99.2 5.7E-12 2E-16 138.7 7.5 201 86-290 100-328 (329)
136 2o6r_A Variable lymphocyte rec 99.2 9.6E-11 3.3E-15 117.1 14.8 130 193-327 9-141 (177)
137 3g39_A Variable lymphocyte rec 99.2 4.8E-11 1.6E-15 119.6 11.6 107 170-300 11-119 (170)
138 2r9u_A Variable lymphocyte rec 99.2 8.9E-11 3E-15 118.4 11.5 106 171-300 15-122 (174)
139 3g39_A Variable lymphocyte rec 99.1 3E-10 1E-14 113.8 11.2 102 140-274 14-118 (170)
140 2r9u_A Variable lymphocyte rec 99.1 3.9E-10 1.3E-14 113.6 11.4 86 168-274 33-121 (174)
141 3un9_A NLR family member X1; l 99.1 3.7E-11 1.3E-15 135.8 3.5 155 168-325 101-285 (372)
142 2ifg_A High affinity nerve gro 99.0 3.2E-10 1.1E-14 125.1 9.7 106 172-301 12-121 (347)
143 3un9_A NLR family member X1; l 99.0 2.4E-11 8.3E-16 137.3 -0.8 178 86-296 71-283 (372)
144 4fdw_A Leucine rich hypothetic 99.0 1.1E-09 3.8E-14 124.9 11.9 224 76-322 146-382 (401)
145 2ifg_A High affinity nerve gro 99.0 3.3E-10 1.1E-14 124.9 7.1 67 165-231 28-98 (347)
146 4fdw_A Leucine rich hypothetic 99.0 2.3E-09 7.9E-14 122.3 12.9 217 82-323 131-358 (401)
147 3rw6_A Nuclear RNA export fact 98.3 1.5E-07 5.1E-12 102.1 3.1 113 209-324 137-263 (267)
148 2ra8_A Uncharacterized protein 98.3 6.3E-07 2.2E-11 101.1 7.1 156 78-269 163-341 (362)
149 1io0_A Tropomodulin; LRR prote 98.3 3.7E-07 1.3E-11 92.8 4.5 122 77-227 26-165 (185)
150 2ra8_A Uncharacterized protein 98.3 3.9E-07 1.3E-11 102.8 4.1 40 257-296 278-320 (362)
151 1io0_A Tropomodulin; LRR prote 98.1 1.7E-06 5.7E-11 87.9 5.2 59 168-226 65-136 (185)
152 4fs7_A Uncharacterized protein 98.1 2.2E-05 7.7E-10 88.3 13.4 141 168-318 230-374 (394)
153 4gt6_A Cell surface protein; l 98.0 0.0001 3.4E-09 83.0 16.5 106 209-322 261-369 (394)
154 4gt6_A Cell surface protein; l 97.8 0.00014 4.7E-09 81.8 14.1 125 186-321 260-389 (394)
155 4fs7_A Uncharacterized protein 97.8 4.4E-05 1.5E-09 85.9 9.1 205 81-293 156-376 (394)
156 3rw6_A Nuclear RNA export fact 97.7 5E-06 1.7E-10 90.2 0.8 96 173-289 148-257 (267)
157 4h09_A Hypothetical leucine ri 97.4 0.0017 5.7E-08 72.2 14.5 125 187-319 213-342 (379)
158 4h09_A Hypothetical leucine ri 97.2 0.0016 5.6E-08 72.2 11.9 123 166-293 215-343 (379)
159 3rfe_A Platelet glycoprotein I 97.0 0.001 3.6E-08 64.0 6.6 60 240-301 12-73 (130)
160 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00066 2.3E-08 70.4 5.5 120 78-226 32-170 (197)
161 3e4g_A ATP synthase subunit S, 96.8 0.00078 2.7E-08 68.6 4.4 39 87-125 61-100 (176)
162 1pgv_A TMD-1, tropomodulin TMD 96.5 0.0028 9.6E-08 65.6 5.9 82 187-268 37-136 (197)
163 3e4g_A ATP synthase subunit S, 96.5 0.0038 1.3E-07 63.6 6.7 80 213-294 61-150 (176)
164 3rfe_A Platelet glycoprotein I 95.5 0.03 1E-06 53.7 7.9 86 261-354 11-102 (130)
165 4fxw_B Splicing factor 1; UHM, 41.5 14 0.00049 35.3 2.8 30 595-624 72-115 (124)
No 1
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.2e-24 Score=244.30 Aligned_cols=294 Identities=14% Similarity=0.135 Sum_probs=226.6
Q ss_pred ccCCeEEEecCCCcccchhh-hhccccchhcccCC-Ccc---------ccccccccCCCCCCchhhHHHhcCCCCCcEEE
Q 001983 25 IEGSIVLKLNPAGLHYVQSR-LEALRELERLLAGA-PLD---------YLRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (986)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~-L~~L~~Le~L~l~~-~l~---------~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~ 93 (986)
+.+++.|++..+.+..+|.. +..+++|+.|.+.. ... .-.+..+++++|......|..+.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 56788999999999999876 46677777766521 111 11234567777765554566788888889999
Q ss_pred ccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccc-------cCCCC
Q 001983 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI-------KDSPQ 166 (986)
Q Consensus 94 Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L-------~~l~~ 166 (986)
|++|.+....+..|..+++|++|+|++|.+++..|..+..++++..+.+.+|.+..++......+..+ ..+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 88888886666667888889999999888888777778888887777788887665532211111111 11123
Q ss_pred CCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCcc-ccccccccceeeccCC
Q 001983 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRN 245 (986)
Q Consensus 167 L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~-~l~~~L~sL~~L~Ls~ 245 (986)
.++|+.|++++|.+..+|.. .+++|+.|++++|.++.++.+..+++|+.|+|++|.++.++ ..+..+++|+.|+|++
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp CSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred CCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence 45688888888888877653 35789999999999999988999999999999999999874 4566689999999999
Q ss_pred CccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccCh
Q 001983 246 NALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 246 N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~ 324 (986)
|+|+.++ .+..+++|+.|+|++|.++.++ ..+..+++|+.|+|++|+++..+ +..++.++.++|.+|++.+
T Consensus 282 n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 282 NRLVALNLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCCCCG--GGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCEEH
T ss_pred CcCcccCcccCCCCCCCEEECCCCcceecC--ccccccCcCCEEECCCCccceeC------chhhccCCEEEcCCCCccc
Confidence 9999986 5678999999999999999987 45778999999999999998653 4567889999999999998
Q ss_pred hHHH
Q 001983 325 RELW 328 (986)
Q Consensus 325 ~e~~ 328 (986)
....
T Consensus 354 ~~~~ 357 (390)
T 3o6n_A 354 NSLR 357 (390)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7643
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.7e-24 Score=246.86 Aligned_cols=300 Identities=20% Similarity=0.214 Sum_probs=229.4
Q ss_pred cccCCeEEEecCCCcccc-hhhhhccccchhcccCCCc-----------cccccccccCCCCCCchhhHHHhcCCCCCcE
Q 001983 24 LIEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGAPL-----------DYLRAYVSDLGDHRALEQLRRILKLLTSLKV 91 (986)
Q Consensus 24 lL~~l~~L~L~~~~L~~L-p~~L~~L~~Le~L~l~~~l-----------~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~ 91 (986)
+...++.|+++.+.+..+ |..+..+++|+.|.+.... ..-.+..+++++|...+..|..+.++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 446688999999999877 6678888888877653221 1122356788887766666778888999999
Q ss_pred EEccCCCCCCCCCcC--CCCCCCccEEEeeCCCCCccchhh-HHhhhhhhhhhhccCCCccchhhccccc----------
Q 001983 92 VSALPPPARDPTPLS--LLPFCRLKVLELRGCDLSTSAAKG-LLELRHTLEKIICHNSTNALRHVFASRI---------- 158 (986)
Q Consensus 92 L~Ls~N~Ls~~lP~s--f~~L~nL~~LdLS~N~Lt~~lp~~-L~~L~~LL~LLL~~N~L~~L~~l~~~~l---------- 158 (986)
|+|++|.+.+..|.. |..+++|++|+|++|.+++..|.. +..++++..+.+.+|.+..+.......+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999999888754444 888899999999999998876765 7788887777788887655433211111
Q ss_pred -----ccc----------cCCCCCCCccEEEccCCccc-cchhhhc----------------------------------
Q 001983 159 -----VEI----------KDSPQWNRLSFVSCSCNRLV-IMDESLQ---------------------------------- 188 (986)
Q Consensus 159 -----~~L----------~~l~~L~sL~~LdLS~N~Lt-~LP~sL~---------------------------------- 188 (986)
..+ .....+++|+.|++++|.++ .+|..+.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 000 11224468999999999887 3333221
Q ss_pred -----CCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCc--ccCCCCC
Q 001983 189 -----LLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL--RGIENLK 258 (986)
Q Consensus 189 -----~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~ 258 (986)
..++|+.|++++|.+..+. .+..+++|+.|+|++|.++.+++ .+..+++|+.|+|++|.|+.+ ..+..++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 1257999999999998753 68899999999999999998765 566689999999999999887 3689999
Q ss_pred CCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChhHH
Q 001983 259 SLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (986)
Q Consensus 259 sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~ 327 (986)
+|+.|+|++|.|+.+++ ..+..+++|+.|+|++|+++..+ ...+..++.|+.++|.+|++.+...
T Consensus 348 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCEEECCCCcccccCh-hhccccccccEEECCCCccccCC---HhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999998854 67899999999999999998654 3456788999999999999998764
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4.4e-24 Score=254.23 Aligned_cols=295 Identities=14% Similarity=0.133 Sum_probs=230.7
Q ss_pred ccCCeEEEecCCCcccchhh-hhccccchhcccCC-Ccc---------ccccccccCCCCCCchhhHHHhcCCCCCcEEE
Q 001983 25 IEGSIVLKLNPAGLHYVQSR-LEALRELERLLAGA-PLD---------YLRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (986)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~-L~~L~~Le~L~l~~-~l~---------~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~ 93 (986)
+.+++.|++..+.+..+|.. +..+++|+.|.+.. .+. .-.+..+++++|......|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45678899999999888875 36666676665421 111 11235677887775555556778999999999
Q ss_pred ccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccc-------cCCCC
Q 001983 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI-------KDSPQ 166 (986)
Q Consensus 94 Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L-------~~l~~ 166 (986)
|++|.+....+..|..+++|++|+|++|.+++..|..|..++++..+.+.+|.+..++......+..+ ..+..
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 99999987777778899999999999999998888888888888888888887766542222211111 11123
Q ss_pred CCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCC
Q 001983 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (986)
Q Consensus 167 L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~ 245 (986)
.++|+.|++++|.+..+|..+ .++|+.|+|++|.++.++.+..+++|+.|+|++|.|+++++ .+..+++|+.|+|++
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred CchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 457888888888888776543 46899999999999998899999999999999999998754 566789999999999
Q ss_pred CccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccCh
Q 001983 246 NALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 246 N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~ 324 (986)
|.|+.++ .+..+++|+.|+|++|.|+.+| ..+..+++|+.|+|++|++...+ +..++.|+.+.|.+|++.|
T Consensus 288 N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 288 NRLVALNLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCCCCG--GGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCcccccCCCCcEEECCCCCCCccC--cccccCCCCCEEECCCCCCCCcC------hhhcCCCCEEEeeCCCCCC
Confidence 9999986 5567999999999999999987 45788999999999999998654 4567899999999999998
Q ss_pred hHHHH
Q 001983 325 RELWE 329 (986)
Q Consensus 325 ~e~~~ 329 (986)
.....
T Consensus 360 ~~~~~ 364 (597)
T 3oja_B 360 NSLRA 364 (597)
T ss_dssp HHHHH
T ss_pred hhHHH
Confidence 86433
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=3.3e-24 Score=246.84 Aligned_cols=279 Identities=15% Similarity=0.135 Sum_probs=183.1
Q ss_pred cccCCeEEEecCCCcccch-hhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCC
Q 001983 24 LIEGSIVLKLNPAGLHYVQ-SRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDP 102 (986)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp-~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~ 102 (986)
+...++.|+++.+.+..++ ..+..+++|+.|. +++|......|..|.++++|++|+|++|.+...
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~--------------L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELE--------------LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEE--------------CTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEE--------------CCCCccCEeChhhhhCCccCCEEECCCCcCCcc
Confidence 3456778888888887764 3556666555554 344433333345566666666666666666655
Q ss_pred CCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCcccc
Q 001983 103 TPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI 182 (986)
Q Consensus 103 lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~ 182 (986)
.+..|.++++|++|+|++|.+++..|..|..++++..+.+.+|.+..+.... +..+++|+.|++++|.++.
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA---------FSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS---------STTCTTCCEEEEESCCCSS
T ss_pred CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh---------ccCCCCCCEEECCCCcCcc
Confidence 5555666666666666666666655556666665555555555544333211 1133455555555555554
Q ss_pred chh-hhcCCCCCCEEECCCCCCCCCC--Cc------------------------CCcCCCCeecCCCCCcCCccc-cccc
Q 001983 183 MDE-SLQLLPAVETLDLSRNKFAKVD--NL------------------------RKCVNLKHLDLGFNNLRSIAA-FSEV 234 (986)
Q Consensus 183 LP~-sL~~L~~L~~LdLS~N~Ls~L~--~L------------------------~~L~~L~~LdLS~N~Ls~L~~-l~~~ 234 (986)
+|. .+..+++|+.|+|++|.+..++ .+ ....+|+.|+|++|.|+.++. .+..
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 246 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence 443 3444555555555555444332 22 233367777777778887774 4556
Q ss_pred cccceeeccCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCC
Q 001983 235 SCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHP 312 (986)
Q Consensus 235 L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L 312 (986)
+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.++..+ ...|..++.|
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L 322 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP-YAFRGLNYLRVLNVSGNQLTTLE---ESVFHSVGNL 322 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT-TTBTTCTTCCEEECCSSCCSCCC---GGGBSCGGGC
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH-HHhcCcccCCEEECCCCcCceeC---HhHcCCCccc
Confidence 789999999999998874 58899999999999999998754 67889999999999999998654 3556678889
Q ss_pred ceeecCCCccChhHHHH
Q 001983 313 AKLKVDGKEISTRELWE 329 (986)
Q Consensus 313 ~lL~LdgN~Is~~e~~~ 329 (986)
+.+.|++|++.|.+...
T Consensus 323 ~~L~l~~N~l~c~c~~~ 339 (477)
T 2id5_A 323 ETLILDSNPLACDCRLL 339 (477)
T ss_dssp CEEECCSSCEECSGGGH
T ss_pred CEEEccCCCccCccchH
Confidence 99999999999887544
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=9e-23 Score=224.66 Aligned_cols=276 Identities=17% Similarity=0.233 Sum_probs=166.2
Q ss_pred cccCCeEEEecCCCcccchhhhhccccchhcccCC-Ccc-------ccccccccCCCCCCchhhHHHhcCCCCCcEEEcc
Q 001983 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-PLD-------YLRAYVSDLGDHRALEQLRRILKLLTSLKVVSAL 95 (986)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~-~l~-------~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls 95 (986)
-+..++.|++..+.+..++. +..+++|+.|.... ... .-.+..+++++|. +..++ .+..+++|++|+|+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEECT
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEECc
Confidence 35567888888888888875 77777777776522 111 1123456777664 34455 58889999999999
Q ss_pred CCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEc
Q 001983 96 PPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSC 175 (986)
Q Consensus 96 ~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdL 175 (986)
+|.+.+..+ +..+++|+.|++++|.....++ .+..++.+..+.+.+|.+..+.. +..+++|+.|++
T Consensus 119 ~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-----------~~~l~~L~~L~l 184 (347)
T 4fmz_A 119 EDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-----------IANLTDLYSLSL 184 (347)
T ss_dssp TSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-----------GGGCTTCSEEEC
T ss_pred CCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-----------hccCCCCCEEEc
Confidence 999886543 7888889999998886555343 37777777777777776555443 113445666666
Q ss_pred cCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcccCC
Q 001983 176 SCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 255 (986)
Q Consensus 176 S~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~ 255 (986)
++|.+..++. +..+++|+.|++++|.+..++.+..+++|+.|+|++|.++.+++ ...+++|+.|++++|.++.++.+.
T Consensus 185 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 262 (347)
T 4fmz_A 185 NYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVK 262 (347)
T ss_dssp TTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGT
T ss_pred cCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChhHh
Confidence 6666665544 55555556666665555555445555555555555555555544 333455555555555555555555
Q ss_pred CCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccCh
Q 001983 256 NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 256 ~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~ 324 (986)
.+++|+.|++++|.|+.++ .+..+++|+.|++++|++... ....+..++.++.++|.+|++..
T Consensus 263 ~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNE---DMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp TCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCGG---GHHHHHTCTTCSEEECCSSSCCC
T ss_pred cCCCcCEEEccCCccCCCh---hhcCCCCCCEEECcCCcCCCc---ChhHhhccccCCEEEccCCcccc
Confidence 5555555555555555542 244555555555555555422 12334445555555555555543
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=241.63 Aligned_cols=287 Identities=20% Similarity=0.230 Sum_probs=222.2
Q ss_pred cccCCeEEEecCCCcccc-hhhhhccccchhcccCCC-c---------cccccccccCCCCCCchhhHHHhcCCCCCcEE
Q 001983 24 LIEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGAP-L---------DYLRAYVSDLGDHRALEQLRRILKLLTSLKVV 92 (986)
Q Consensus 24 lL~~l~~L~L~~~~L~~L-p~~L~~L~~Le~L~l~~~-l---------~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L 92 (986)
-+..++.|++..+.+..+ |..+..+++|+.|.+..+ + ..-.+..+++++|......|..+..+++|+.|
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 356788999999988877 667788888877765221 1 11223456777776666556677888888888
Q ss_pred EccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccE
Q 001983 93 SALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSF 172 (986)
Q Consensus 93 ~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~ 172 (986)
+|++|.+....+..|..+++|+.|+|++|.+++..+..+..++++..+.+.+|.+..+.... +..+++|+.
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~---------~~~l~~L~~ 204 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS---------FKRLYRLKV 204 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC---------SCSCTTCCE
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh---------cccCcccce
Confidence 88888888777778888888888888888888777777778877777777777766554432 235678999
Q ss_pred EEccCCccc-cchhhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCcc
Q 001983 173 VSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNAL 248 (986)
Q Consensus 173 LdLS~N~Lt-~LP~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~L 248 (986)
|++++|.+. .+|..+....+|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.++. .+..+++|+.|+|++|+|
T Consensus 205 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp EEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred eeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence 999987654 77776666779999999999999987 68999999999999999998875 456689999999999999
Q ss_pred CCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccCh
Q 001983 249 TTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 249 s~L--~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~ 324 (986)
+.+ ..+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|+|.|+|... +. +.....+.+.++.+.|
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~c~c~~~-~~---~~~~~~~~~~~~~~~C 357 (477)
T 2id5_A 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEE-SVFHSVGNLETLILDSNPLACDCRLL-WV---FRRRWRLNFNRQQPTC 357 (477)
T ss_dssp SEECTTTBTTCTTCCEEECCSSCCSCCCG-GGBSCGGGCCEEECCSSCEECSGGGH-HH---HTTTTSSCCTTCCCBE
T ss_pred ceECHHHhcCcccCCEEECCCCcCceeCH-hHcCCCcccCEEEccCCCccCccchH-hH---HhhhhccccCccCcee
Confidence 997 378999999999999999999875 67889999999999999999998543 22 1223334455555544
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1.2e-23 Score=241.68 Aligned_cols=238 Identities=15% Similarity=0.165 Sum_probs=151.6
Q ss_pred chhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcc
Q 001983 76 LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFA 155 (986)
Q Consensus 76 L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~ 155 (986)
+..+|..+ .++|++|+|++|.+.+..|..|.++++|++|+|++|.|++..+..|.+++++..+.+.+|.+..++...+
T Consensus 66 l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 143 (452)
T 3zyi_A 66 LSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF 143 (452)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS
T ss_pred cCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh
Confidence 44455432 2466666666666666666666666666666666666666666666666666666666665554443221
Q ss_pred cccccccCCCCCCCccEEEccCCccccchh-hhcCCCCCCEEECCC-CCCCCCC--CcCCcCCCCeecCCCCCcCCcccc
Q 001983 156 SRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF 231 (986)
Q Consensus 156 ~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~-N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~l 231 (986)
..+++|++|+|++|.|+.+|. .|..+++|+.|+|++ |.+..++ .|..+++|+.|+|++|.|+.++.+
T Consensus 144 ---------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 214 (452)
T 3zyi_A 144 ---------EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNL 214 (452)
T ss_dssp ---------SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCC
T ss_pred ---------cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccc
Confidence 235567777777777776655 566777777777776 4455443 466777777777777777766543
Q ss_pred ccccccceeeccCCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhc
Q 001983 232 SEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYF 309 (986)
Q Consensus 232 ~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l 309 (986)
..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.|+..+ ...+..+
T Consensus 215 -~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l 289 (452)
T 3zyi_A 215 -TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSLP---HDLFTPL 289 (452)
T ss_dssp -TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---TTSSTTC
T ss_pred -cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCccC---hHHhccc
Confidence 3456777777777777765 256777777777777777776643 55667777777777777776443 2344556
Q ss_pred CCCceeecCCCccChhHHHH
Q 001983 310 AHPAKLKVDGKEISTRELWE 329 (986)
Q Consensus 310 ~~L~lL~LdgN~Is~~e~~~ 329 (986)
+.|+.++|++|++.|++...
T Consensus 290 ~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp TTCCEEECCSSCEECSTTTH
T ss_pred cCCCEEEccCCCcCCCCCch
Confidence 66777777777777665443
No 8
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=241.29 Aligned_cols=241 Identities=16% Similarity=0.174 Sum_probs=167.2
Q ss_pred CchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhc
Q 001983 75 ALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVF 154 (986)
Q Consensus 75 ~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~ 154 (986)
.+..+|..+ .++|+.|+|++|.+....+..|.++++|++|+|++|.|+...+..|.+++++..+.+.+|.+..++...
T Consensus 54 ~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (440)
T 3zyj_A 54 NLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131 (440)
T ss_dssp CCSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred CcCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhH
Confidence 355555533 256777777777777666677777777777777777777766667777777666667777665554322
Q ss_pred ccccccccCCCCCCCccEEEccCCccccchh-hhcCCCCCCEEECCC-CCCCCCC--CcCCcCCCCeecCCCCCcCCccc
Q 001983 155 ASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA 230 (986)
Q Consensus 155 ~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~-N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~ 230 (986)
+ ..+++|++|+|++|.|+.+|. .|..+++|+.|+|++ |.+..++ .|..+++|+.|+|++|.|+.++.
T Consensus 132 ~---------~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 132 F---------VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp S---------CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred h---------hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 1 245677888888888776665 577778888888877 3455443 57777788888888888777765
Q ss_pred cccccccceeeccCCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhh
Q 001983 231 FSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSY 308 (986)
Q Consensus 231 l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~ 308 (986)
+ ..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|.++..+ ...+..
T Consensus 203 ~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~ 277 (440)
T 3zyj_A 203 L-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTLLP---HDLFTP 277 (440)
T ss_dssp C-TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCCCC---TTTTSS
T ss_pred c-CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCccC---hhHhcc
Confidence 3 3457788888888877776 267777788888888888877654 56777778888888888777543 344556
Q ss_pred cCCCceeecCCCccChhHHHHHH
Q 001983 309 FAHPAKLKVDGKEISTRELWERQ 331 (986)
Q Consensus 309 l~~L~lL~LdgN~Is~~e~~~~~ 331 (986)
++.|+.++|++|++.|++...+.
T Consensus 278 l~~L~~L~L~~Np~~CdC~l~~l 300 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCNCDILWL 300 (440)
T ss_dssp CTTCCEEECCSSCEECSSTTHHH
T ss_pred ccCCCEEEcCCCCccCCCCchHH
Confidence 67777888888887777654443
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=3.1e-23 Score=245.15 Aligned_cols=313 Identities=17% Similarity=0.121 Sum_probs=230.7
Q ss_pred CCeEEEecCCCcccchhh-hhccccchhcccCC-Ccc--------ccccccccCCCCCCchhhHHHhcCCCCCcEEEccC
Q 001983 27 GSIVLKLNPAGLHYVQSR-LEALRELERLLAGA-PLD--------YLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALP 96 (986)
Q Consensus 27 ~l~~L~L~~~~L~~Lp~~-L~~L~~Le~L~l~~-~l~--------~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~ 96 (986)
.++.|++..+.+..++.. +..+++|+.|.... .+. .-.+..+++++|......|..+..+++|++|+|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 455666666666665543 45555555544311 110 01223456777765555566788899999999999
Q ss_pred CCCCCCCCc-CCCCCCCccEEEeeCCCCCccc--hhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEE
Q 001983 97 PPARDPTPL-SLLPFCRLKVLELRGCDLSTSA--AKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFV 173 (986)
Q Consensus 97 N~Ls~~lP~-sf~~L~nL~~LdLS~N~Lt~~l--p~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~L 173 (986)
|.+.+.+|. .+..+++|++|+|++|.+++.. +..+..++++..+.+.+|.+..+... .+..+++|+.|
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------~~~~l~~L~~L 405 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE---------AFKECPQLELL 405 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT---------TTTTCTTCSEE
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH---------HhcCCccCCeE
Confidence 988755554 5888999999999999998765 67788888877777888766544322 12356799999
Q ss_pred EccCCccccc-hh-hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCc--c--ccccccccceeeccCC
Q 001983 174 SCSCNRLVIM-DE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSI--A--AFSEVSCHIVKLVLRN 245 (986)
Q Consensus 174 dLS~N~Lt~L-P~-sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L--~--~l~~~L~sL~~L~Ls~ 245 (986)
++++|.+... |. .+..+++|+.|++++|.+...+ .+..+++|+.|+|++|.+++. + ..+..+++|+.|+|++
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 9999999854 33 4889999999999999998753 688999999999999999863 2 2455679999999999
Q ss_pred CccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 246 NALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 246 N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
|+++.+ ..+..+++|+.|+|++|.++..++ ..+..++.| .|+|++|+++..+ +..+..++.++.++|.+|++.
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L-~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI-EALSHLKGI-YLNLASNHISIIL---PSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGG-GGGTTCCSC-EEECCSSCCCCCC---GGGHHHHHTSSEEECTTCCEE
T ss_pred CccCccChhhhccccCCCEEECCCCccCcCCh-hHhCccccc-EEECcCCcccccC---HhhcccCCCCCEEeCCCCCcc
Confidence 999987 378999999999999999998764 788999999 9999999998554 455677889999999999999
Q ss_pred hhHHHHHHHHHHhh----cCCCCCCCccCCCCCC
Q 001983 324 TRELWERQLIIARR----QKRPAGFGFYSPAKGN 353 (986)
Q Consensus 324 ~~e~~~~~~l~~~~----~~~p~~~~~~~P~~~~ 353 (986)
|.+...+...+... ......+.|..|....
T Consensus 561 c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~ 594 (606)
T 3t6q_A 561 CTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLR 594 (606)
T ss_dssp CSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGT
T ss_pred ccCCcHHHHHHHHhCcccccCCCCCeeCCchHhC
Confidence 87754443333332 1233445565554433
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=3.2e-22 Score=220.30 Aligned_cols=274 Identities=16% Similarity=0.211 Sum_probs=149.5
Q ss_pred ccCCeEEEecCCCcccchhhhhccccchhcccCC-Cccc-------cccccccCCCCCCchhhHHHhcCCCCCcEEEccC
Q 001983 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-PLDY-------LRAYVSDLGDHRALEQLRRILKLLTSLKVVSALP 96 (986)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~-~l~~-------l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~ 96 (986)
+..++.|+++.+.+..++. +..+++|+.|.... .... -.+..+++++|.. ..++. +..+++|+.|++++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNI-SDISP-LANLTKMYSLNLGA 141 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCC-CCCGG-GTTCTTCCEEECTT
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcc-cCchh-hccCCceeEEECCC
Confidence 3445666666666666555 55555555554421 1110 1123344554432 22333 55666666666666
Q ss_pred CCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEcc
Q 001983 97 PPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCS 176 (986)
Q Consensus 97 N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS 176 (986)
|......+ .+..+++|++|++++|.+.+..+ +..++++..+.+.+|.+..++. +..+++|+.|+++
T Consensus 142 n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-----------~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 142 NHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-----------LASLTSLHYFTAY 207 (347)
T ss_dssp CTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-----------GGGCTTCCEEECC
T ss_pred CCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-----------ccCCCccceeecc
Confidence 65443333 25666666666666666655332 5555555555555555444332 1134456666666
Q ss_pred CCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcccCCC
Q 001983 177 CNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIEN 256 (986)
Q Consensus 177 ~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~ 256 (986)
+|.+..++. +..+++|+.|++++|.++.++.+..+++|+.|++++|.++.++. ...+++|+.|++++|.|+.++.+..
T Consensus 208 ~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 285 (347)
T 4fmz_A 208 VNQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDISVLNN 285 (347)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred cCCCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChh-HhcCCCcCEEEccCCccCCChhhcC
Confidence 666665543 55566666666666666665556666666666666666665532 3334566666666666666655666
Q ss_pred CCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 257 LKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 257 L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
+++|+.|+|++|.++..++ ..+..+++|+.|++++|+++..+. +..++.++.+++.+|+++
T Consensus 286 l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHITDIRP-----LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSSCCCCGG-----GGGCTTCSEESSSCC---
T ss_pred CCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCccccccC-----hhhhhccceeehhhhccc
Confidence 6666666666666665433 445566666666666666654431 345566666666666653
No 11
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=4e-23 Score=236.46 Aligned_cols=246 Identities=19% Similarity=0.217 Sum_probs=208.8
Q ss_pred EEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCC
Q 001983 30 VLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLP 109 (986)
Q Consensus 30 ~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~ 109 (986)
.++.....+..+|..+. . .+..+++++|......+..|.++++|++|+|++|.+....+..|.+
T Consensus 47 ~v~c~~~~l~~iP~~~~--~--------------~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~ 110 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--T--------------NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110 (440)
T ss_dssp EEECCSCCCSSCCSCCC--T--------------TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT
T ss_pred EEEeCCCCcCcCCCCCC--C--------------CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC
Confidence 45556666666664332 1 1344677777655555578999999999999999999888899999
Q ss_pred CCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccC-Cccccchh-hh
Q 001983 110 FCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSC-NRLVIMDE-SL 187 (986)
Q Consensus 110 L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~-N~Lt~LP~-sL 187 (986)
+++|++|+|++|.|+...+..|..++++..+.+.+|.+..++...+ ..+++|+.|++++ |.+..++. .|
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~---------~~l~~L~~L~l~~~~~l~~i~~~~~ 181 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF---------NRIPSLRRLDLGELKRLSYISEGAF 181 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT---------TTCTTCCEEECCCCTTCCEECTTTT
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh---------hhCcccCEeCCCCCCCcceeCcchh
Confidence 9999999999999998777789999998888899998776665333 3567999999998 56777776 68
Q ss_pred cCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCcc--cCCCCCCCCEEE
Q 001983 188 QLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLD 264 (986)
Q Consensus 188 ~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~Ld 264 (986)
..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|+|+.++ .+..+++|+.|+
T Consensus 182 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp TTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred hcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence 9999999999999999999999999999999999999998854 5667899999999999999973 789999999999
Q ss_pred ccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 001983 265 ISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (986)
Q Consensus 265 LS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~ 301 (986)
|++|.|+.++. ..+..+++|+.|+|++|||.|+|.+
T Consensus 262 L~~N~l~~~~~-~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 262 LAHNNLTLLPH-DLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CTTSCCCCCCT-TTTSSCTTCCEEECCSSCEECSSTT
T ss_pred CCCCCCCccCh-hHhccccCCCEEEcCCCCccCCCCc
Confidence 99999999875 6788999999999999999999864
No 12
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=5.1e-23 Score=236.37 Aligned_cols=227 Identities=19% Similarity=0.203 Sum_probs=200.4
Q ss_pred cccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhcc
Q 001983 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (986)
Q Consensus 65 l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~ 144 (986)
+..+++++|+.....|..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.|+...+..|..++++..+.+.+
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 156 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS
T ss_pred ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC
Confidence 34577888776665577899999999999999999998899999999999999999999998777888899988888999
Q ss_pred CCCccchhhcccccccccCCCCCCCccEEEccC-Cccccchh-hhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCC
Q 001983 145 NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSC-NRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGF 222 (986)
Q Consensus 145 N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~-N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~ 222 (986)
|.+..++...+ ..+++|+.|++++ |.+..+|. .|..+++|+.|+|++|.|+.++.+..+++|+.|+|++
T Consensus 157 N~l~~~~~~~~---------~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 157 NPIESIPSYAF---------NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG 227 (452)
T ss_dssp CCCCEECTTTT---------TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTT
T ss_pred CCcceeCHhHH---------hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcC
Confidence 98876665332 3577999999998 67777776 6899999999999999999999999999999999999
Q ss_pred CCcCCccc-cccccccceeeccCCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 001983 223 NNLRSIAA-FSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (986)
Q Consensus 223 N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~ 299 (986)
|.|+.+++ .+..+++|+.|+|++|+|+.+ ..+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++||+.|+|
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH-DLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-TSSTTCTTCCEEECCSSCEECST
T ss_pred CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh-HHhccccCCCEEEccCCCcCCCC
Confidence 99998854 566789999999999999997 378999999999999999999875 66788999999999999999998
Q ss_pred cc
Q 001983 300 WY 301 (986)
Q Consensus 300 ~~ 301 (986)
.+
T Consensus 307 ~~ 308 (452)
T 3zyi_A 307 DI 308 (452)
T ss_dssp TT
T ss_pred Cc
Confidence 64
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=2.5e-23 Score=249.99 Aligned_cols=288 Identities=18% Similarity=0.208 Sum_probs=231.1
Q ss_pred CeEEEecCCCcc-cchhhhhccccchhcccCCCcc---------------------------------------------
Q 001983 28 SIVLKLNPAGLH-YVQSRLEALRELERLLAGAPLD--------------------------------------------- 61 (986)
Q Consensus 28 l~~L~L~~~~L~-~Lp~~L~~L~~Le~L~l~~~l~--------------------------------------------- 61 (986)
...|++..+.+. .+|..+..|+.|+.|.+..+..
T Consensus 83 V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~ 162 (636)
T 4eco_A 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162 (636)
T ss_dssp EEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHH
Confidence 467889999887 8899999999999988754311
Q ss_pred -----------------ccccccccCCC-CCCchhhHHHhcCCCCCcEEEccCCCCCCC-----------------CCcC
Q 001983 62 -----------------YLRAYVSDLGD-HRALEQLRRILKLLTSLKVVSALPPPARDP-----------------TPLS 106 (986)
Q Consensus 62 -----------------~l~l~vLdLs~-~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~-----------------lP~s 106 (986)
......+.++. ++.+..+|..++++++|++|+|++|.+++. +|..
T Consensus 163 ~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~ 242 (636)
T 4eco_A 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242 (636)
T ss_dssp HHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh
Confidence 00001111221 234444999999999999999999999985 8999
Q ss_pred CC--CCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCC-Ccc--chhhcccccccccCCCCCCCccEEEccCCccc
Q 001983 107 LL--PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNA--LRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV 181 (986)
Q Consensus 107 f~--~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~-L~~--L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt 181 (986)
+. ++++|++|+|++|.+.+.+|..|.+++++..+.+.+|. +.. ++..+.. +..+..+++|++|++++|+++
T Consensus 243 l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~----L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA----LADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHH----HHHSGGGGTCCEEECCSSCCS
T ss_pred hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHh----hhccccCCCCCEEECCCCcCC
Confidence 99 99999999999999999999999999998888888886 653 4433221 211223468999999999999
Q ss_pred cchh--hhcCCCCCCEEECCCCCCC-CCCCcCCcCCCCeecCCCCCcCCcccccccccc-ceeeccCCCccCCcc-cCCC
Q 001983 182 IMDE--SLQLLPAVETLDLSRNKFA-KVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCH-IVKLVLRNNALTTLR-GIEN 256 (986)
Q Consensus 182 ~LP~--sL~~L~~L~~LdLS~N~Ls-~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~s-L~~L~Ls~N~Ls~L~-~L~~ 256 (986)
.+|. .+..+++|+.|+|++|.++ .+|.+..+++|+.|+|++|.++.+|..+..+++ |+.|+|++|.|+.+| .+..
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~ 398 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCT
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhh
Confidence 9998 8999999999999999999 678888999999999999999988877777788 999999999999886 4444
Q ss_pred C--CCCCEEEccCCCCCCCchhhhhc-------CCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 257 L--KSLEGLDISYNIISTFSELEFLA-------SLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 257 L--~sL~~LdLS~N~Ls~lp~l~~L~-------~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
+ ++|+.|+|++|.++...+ ..+. .+++|+.|+|++|.++..+ ...+..++.++.+.|.+|.+.
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp---~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDG-KNFDPLDPTPFKGINVSSINLSNNQISKFP---KELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTT-CSSCTTCSSCCCCCCEEEEECCSSCCCSCC---THHHHTTCCCSEEECCSSCCS
T ss_pred cccCccCEEECcCCcCCCcch-hhhcccccccccCCCCCEEECcCCccCcCC---HHHHccCCCCCEEECCCCCCC
Confidence 3 489999999999987543 4455 6789999999999998443 456667889999999999886
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=236.65 Aligned_cols=160 Identities=18% Similarity=0.141 Sum_probs=132.8
Q ss_pred CCCCCccEEEccCCcccc-chhhhcCCCCCCEEECCCCCCCCCC----CcCCcCCCCeecCCCCCcCC-cccc-cccccc
Q 001983 165 PQWNRLSFVSCSCNRLVI-MDESLQLLPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRS-IAAF-SEVSCH 237 (986)
Q Consensus 165 ~~L~sL~~LdLS~N~Lt~-LP~sL~~L~~L~~LdLS~N~Ls~L~----~L~~L~~L~~LdLS~N~Ls~-L~~l-~~~L~s 237 (986)
..+++|++|++++|.++. +|..+..+++|+.|+|++|+++.++ .+..+++|+.|+|++|.++. ++.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 467889999999999985 7778899999999999999998753 47889999999999999988 7753 556789
Q ss_pred ceeeccCCCccCCc-c-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCcee
Q 001983 238 IVKLVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKL 315 (986)
Q Consensus 238 L~~L~Ls~N~Ls~L-~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL 315 (986)
|+.|+|++|+|+.. + .+. ++|+.|+|++|.|+.+| ..+..+++|+.|+|++|+++..+. ..+..++.++.+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L 473 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIP--KQVVKLEALQELNVASNQLKSVPD---GIFDRLTSLQKI 473 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCC--GGGGGCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEE
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccc--hhhhcCCCCCEEECCCCcCCccCH---HHhccCCcccEE
Confidence 99999999998763 2 232 79999999999999988 456699999999999999996552 346778899999
Q ss_pred ecCCCccChhHHHHHH
Q 001983 316 KVDGKEISTRELWERQ 331 (986)
Q Consensus 316 ~LdgN~Is~~e~~~~~ 331 (986)
+|.+|++.|.+...+.
T Consensus 474 ~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 474 WLHTNPWDCSCPRIDY 489 (520)
T ss_dssp ECCSSCBCCCHHHHHH
T ss_pred ECcCCCCcccCCchHH
Confidence 9999999998765544
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=9.9e-23 Score=232.20 Aligned_cols=275 Identities=20% Similarity=0.230 Sum_probs=206.2
Q ss_pred ccCCeEEEecCCCcc-cc-hhhhhccccchhcccCC-Ccc---------ccccccccCCCCCCchhhHHH--hcCCCCCc
Q 001983 25 IEGSIVLKLNPAGLH-YV-QSRLEALRELERLLAGA-PLD---------YLRAYVSDLGDHRALEQLRRI--LKLLTSLK 90 (986)
Q Consensus 25 L~~l~~L~L~~~~L~-~L-p~~L~~L~~Le~L~l~~-~l~---------~l~l~vLdLs~~~~L~~Lp~~--L~~L~nLk 90 (986)
+..++.|++..+.+. .+ +..+..+++|+.|.+.. ... .-.+..+++++|...+.++.. +..+++|+
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 456778888877764 33 44566677777666521 111 112346778888776666665 88999999
Q ss_pred EEEccCCCCCCCCCcC-CCCCCCccEEEeeCCCCCccchhhHHhh----------------------------------h
Q 001983 91 VVSALPPPARDPTPLS-LLPFCRLKVLELRGCDLSTSAAKGLLEL----------------------------------R 135 (986)
Q Consensus 91 ~L~Ls~N~Ls~~lP~s-f~~L~nL~~LdLS~N~Lt~~lp~~L~~L----------------------------------~ 135 (986)
+|+|++|.+.+..|.. |..+++|++|+|++|.+++..|..+..+ +
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 9999999999887776 7899999999999999988777766655 2
Q ss_pred hhhhhhhccCCCccch-hhccc-----cccccc-----------------C-----C--CCCCCccEEEccCCccccc-h
Q 001983 136 HTLEKIICHNSTNALR-HVFAS-----RIVEIK-----------------D-----S--PQWNRLSFVSCSCNRLVIM-D 184 (986)
Q Consensus 136 ~LL~LLL~~N~L~~L~-~l~~~-----~l~~L~-----------------~-----l--~~L~sL~~LdLS~N~Lt~L-P 184 (986)
++..+.+.+|.+.... ..+.. .+..+. . + ...++|+.|++++|.++.+ |
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence 3334444444432211 00000 000000 0 0 0235899999999999954 6
Q ss_pred hhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCc--ccCCCCCC
Q 001983 185 ESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL--RGIENLKS 259 (986)
Q Consensus 185 ~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~s 259 (986)
..+..+++|+.|+|++|.++.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|+|+.+ ..+..+++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 68999999999999999999864 78999999999999999998854 556689999999999999987 37899999
Q ss_pred CCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001983 260 LEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (986)
Q Consensus 260 L~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~ 300 (986)
|+.|+|++|.|+.++. ..+..+++|+.|+|++|+|.|.|.
T Consensus 373 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 373 LKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccEEECCCCccccCCH-hHhccCCcccEEEccCCCcccCCC
Confidence 9999999999999875 567899999999999999999975
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=4.9e-23 Score=252.34 Aligned_cols=246 Identities=21% Similarity=0.182 Sum_probs=194.7
Q ss_pred cccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhcc
Q 001983 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (986)
Q Consensus 65 l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~ 144 (986)
+..+++++|...+.+|..+.++++|+.|+|++|.+.+.+|..|..+++|+.|+|++|.+++.+|..+..++.+..+.+.+
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 44566777766667777888888888888888888888888888888888888888888888888888888877777777
Q ss_pred CCCcc-chhhcccccccccCCCCCCCccEEEccCCccc-cchhhhcCCCCCCEEECCCCCCCC-CC-CcCCcCCCCeecC
Q 001983 145 NSTNA-LRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRKCVNLKHLDL 220 (986)
Q Consensus 145 N~L~~-L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt-~LP~sL~~L~~L~~LdLS~N~Ls~-L~-~L~~L~~L~~LdL 220 (986)
|.+.. ++..+ ..+++|++|++++|+++ .+|..+..+++|+.|+|++|++++ +| .+..+++|+.|+|
T Consensus 476 N~l~~~~p~~l----------~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 476 NDLTGEIPSGL----------SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp SCCCSCCCGGG----------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred CcccCcCCHHH----------hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 76552 22221 24678999999999998 888889999999999999999985 44 7889999999999
Q ss_pred CCCCcCC-cccc--------------------------------------------------------------------
Q 001983 221 GFNNLRS-IAAF-------------------------------------------------------------------- 231 (986)
Q Consensus 221 S~N~Ls~-L~~l-------------------------------------------------------------------- 231 (986)
++|.+++ +|..
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 9998873 3321
Q ss_pred --ccccccceeeccCCCccCC-cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhh
Q 001983 232 --SEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS 307 (986)
Q Consensus 232 --~~~L~sL~~L~Ls~N~Ls~-L~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~ 307 (986)
+..+++|+.|+|++|++++ +| .++.++.|+.|+|++|.+++..+ ..++.+++|+.|+|++|.++... +..+.
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~~L~~L~~LdLs~N~l~g~i---p~~l~ 701 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGRI---PQAMS 701 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEECC---CGGGG
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC-hHHhCCCCCCEEECCCCcccCcC---ChHHh
Confidence 1124678899999999986 44 78899999999999999985433 67899999999999999998542 35677
Q ss_pred hcCCCceeecCCCccCh
Q 001983 308 YFAHPAKLKVDGKEIST 324 (986)
Q Consensus 308 ~l~~L~lL~LdgN~Is~ 324 (986)
.++.|+.++|++|+++.
T Consensus 702 ~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp GCCCCSEEECCSSEEEE
T ss_pred CCCCCCEEECcCCcccc
Confidence 88899999999998864
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1.5e-22 Score=251.74 Aligned_cols=289 Identities=18% Similarity=0.172 Sum_probs=231.2
Q ss_pred CeEEEecCCCcc-cchhhhhccccchhccc-CCCc-------c-------------------------------------
Q 001983 28 SIVLKLNPAGLH-YVQSRLEALRELERLLA-GAPL-------D------------------------------------- 61 (986)
Q Consensus 28 l~~L~L~~~~L~-~Lp~~L~~L~~Le~L~l-~~~l-------~------------------------------------- 61 (986)
...|+|..+.+. .+|..+..|+.|+.|.+ .... .
T Consensus 325 V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~ 404 (876)
T 4ecn_A 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404 (876)
T ss_dssp EEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHH
Confidence 467899999887 88999999999999887 2220 0
Q ss_pred -----------------ccccccccCCC-CCCchhhHHHhcCCCCCcEEEccCCCCCC-----------------CCCcC
Q 001983 62 -----------------YLRAYVSDLGD-HRALEQLRRILKLLTSLKVVSALPPPARD-----------------PTPLS 106 (986)
Q Consensus 62 -----------------~l~l~vLdLs~-~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~-----------------~lP~s 106 (986)
.+++..+.++. ++.+..+|..+.++++|++|+|++|.+++ .+|..
T Consensus 405 ~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~ 484 (876)
T 4ecn_A 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484 (876)
T ss_dssp HHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh
Confidence 01111122222 22344489999999999999999999998 38888
Q ss_pred CC--CCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCC-Ccc--chhhccccccccc-CCCCCCCccEEEccCCcc
Q 001983 107 LL--PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNA--LRHVFASRIVEIK-DSPQWNRLSFVSCSCNRL 180 (986)
Q Consensus 107 f~--~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~-L~~--L~~l~~~~l~~L~-~l~~L~sL~~LdLS~N~L 180 (986)
++ ++++|++|+|++|.+.+.+|..|.+++++..+.+.+|+ +.. ++..+ ..+. .+..+++|+.|+|++|.|
T Consensus 485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i----~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW----TRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHH----HHHHHCTTTTTTCCEEECCSSCC
T ss_pred hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHH----HhhhhcccccCCccEEEeeCCcC
Confidence 88 99999999999999999999999999998888899886 653 44332 2222 345677999999999999
Q ss_pred ccchh--hhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCcccccccccc-ceeeccCCCccCCcc-cCCC
Q 001983 181 VIMDE--SLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCH-IVKLVLRNNALTTLR-GIEN 256 (986)
Q Consensus 181 t~LP~--sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~s-L~~L~Ls~N~Ls~L~-~L~~ 256 (986)
+.+|. .+..+++|+.|+|++|.|+.+|.+..+++|+.|+|++|.|+.+|..+..+++ |+.|+|++|.|+.+| .+..
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~ 640 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA 640 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCT
T ss_pred CccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhc
Confidence 99998 8999999999999999999889999999999999999999988877777788 999999999999886 4444
Q ss_pred CC--CCCEEEccCCCCCCCch-h-hhhc--CCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 257 LK--SLEGLDISYNIISTFSE-L-EFLA--SLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 257 L~--sL~~LdLS~N~Ls~lp~-l-~~L~--~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
++ +|+.|+|++|.|.+..+ + ..+. .+++|+.|+|++|.+...+ ...+..++.|+.|.|.+|.+.
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp---~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP---TELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC---HHHHHTTCCCSEEECCSCCCS
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC---HHHHccCCCCCEEECCCCcCC
Confidence 43 49999999999987432 1 1122 4558999999999998443 455667889999999999886
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=3.4e-22 Score=219.42 Aligned_cols=267 Identities=17% Similarity=0.170 Sum_probs=193.1
Q ss_pred CCeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcC
Q 001983 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLS 106 (986)
Q Consensus 27 ~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~s 106 (986)
.++.+++..+.+..+|..+. +.| ..++++++......+..+.++++|++|+|++|.+.+..|..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l--------------~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDT--------------ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTC--------------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred CCeEEEecCCCccccCccCC--CCC--------------eEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence 45788888888888776432 222 33566666544433447888999999999999998888888
Q ss_pred CCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccc---cc
Q 001983 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV---IM 183 (986)
Q Consensus 107 f~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt---~L 183 (986)
|..+++|++|+|++|.++. +|..+. +.+..+.+.+|.+..+....+. .+++|+.|++++|.+. ..
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~---------~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFN---------GLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp TTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHT---------TCTTCCEEECCSSCCCGGGBC
T ss_pred hcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhc---------CCccccEEECCCCcCCccCcC
Confidence 9999999999999999886 444333 4555566777776655443222 4668888888888886 34
Q ss_pred hhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCcc-ccccccccceeeccCCCccCCcc--cCCCCCCC
Q 001983 184 DESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (986)
Q Consensus 184 P~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~-~l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL 260 (986)
+..+..+++|+.|++++|.++.++... .++|+.|+|++|.++.++ ..+..+++|+.|+|++|.|+.++ .+..+++|
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred hhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence 557888888888999888888876322 278888888888888774 35556788888888888888864 57888888
Q ss_pred CEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchH---HhhhcCCCceeecCCCccCh
Q 001983 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQ---VFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 261 ~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~---~~~~l~~L~lL~LdgN~Is~ 324 (986)
+.|+|++|.|+.+| ..+..+++|+.|+|++|+|+..+..... .......+..+.+.+|++..
T Consensus 243 ~~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 243 RELHLNNNKLVKVP--GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CEEECCSSCCSSCC--TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CEEECCCCcCccCC--hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 88888888888877 4577888888888888888765321100 01123567788888888864
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=3.4e-23 Score=248.88 Aligned_cols=230 Identities=16% Similarity=0.209 Sum_probs=169.9
Q ss_pred hHHHhc--CCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCC-CCc-cchhhHHhh------hhhhhhhhccCCCc
Q 001983 79 LRRILK--LLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-LST-SAAKGLLEL------RHTLEKIICHNSTN 148 (986)
Q Consensus 79 Lp~~L~--~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~-Lt~-~lp~~L~~L------~~LL~LLL~~N~L~ 148 (986)
+|..+. ++++|++|+|++|.+.+.+|..|.++++|++|+|++|. +++ .+|..+..+ +++..+.+.+|.+.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 899888 99999999999999999999999999999999999998 998 899999887 78888888888877
Q ss_pred cchh--hcccccccccCCCCCCCccEEEccCCccc-cchhhhcCCCCCCEEECCCCCCCCCC-CcCCcCC-CCeecCCCC
Q 001983 149 ALRH--VFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVN-LKHLDLGFN 223 (986)
Q Consensus 149 ~L~~--l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt-~LP~sL~~L~~L~~LdLS~N~Ls~L~-~L~~L~~-L~~LdLS~N 223 (986)
.++. .+ ..+++|++|++++|.++ .+| .+..+++|+.|+|++|.++.+| .+..+++ |+.|+|++|
T Consensus 319 ~ip~~~~l----------~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 319 TFPVETSL----------QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp SCCCHHHH----------TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS
T ss_pred ccCchhhh----------ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC
Confidence 6654 22 23567777777777777 777 7777777777777777777665 5777777 777777777
Q ss_pred CcCCcccccccc--ccceeeccCCCccCCc--ccCC-------CCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecC
Q 001983 224 NLRSIAAFSEVS--CHIVKLVLRNNALTTL--RGIE-------NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEG 292 (986)
Q Consensus 224 ~Ls~L~~l~~~L--~sL~~L~Ls~N~Ls~L--~~L~-------~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~ 292 (986)
.++.+|..+..+ ++|+.|+|++|.|+.. ..+. .+++|+.|+|++|.|+.+|. ..+..+++|+.|+|++
T Consensus 388 ~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMG 466 (636)
T ss_dssp CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT-HHHHTTCCCSEEECCS
T ss_pred cCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH-HHHccCCCCCEEECCC
Confidence 777776644432 3677777777777663 2344 56677777777777777664 4455677777777777
Q ss_pred CCCCCCcccchHHhhh-------cCCCceeecCCCccC
Q 001983 293 NPLCCSRWYRAQVFSY-------FAHPAKLKVDGKEIS 323 (986)
Q Consensus 293 NpLt~~~~~r~~~~~~-------l~~L~lL~LdgN~Is 323 (986)
|.++..+ ...+.. ++.|+.++|.+|.+.
T Consensus 467 N~l~~i~---~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 467 NMLTEIP---KNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp SCCSBCC---SSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred CCCCCcC---HHHhccccccccccCCccEEECcCCcCC
Confidence 7776332 111211 125677777777665
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=1.2e-22 Score=236.89 Aligned_cols=155 Identities=21% Similarity=0.230 Sum_probs=107.6
Q ss_pred CCCccEEEccCCcccc-chh---hhcCCCCCCEEECCCCCCCCCC----CcCCcCCCCeecCCCCCcCCccccccccccc
Q 001983 167 WNRLSFVSCSCNRLVI-MDE---SLQLLPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHI 238 (986)
Q Consensus 167 L~sL~~LdLS~N~Lt~-LP~---sL~~L~~L~~LdLS~N~Ls~L~----~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL 238 (986)
+++|+.|++++|.++. +|. .+..+++|+.|+|++|+++.++ .+..+++|+.|+|++|+|+.+|.....+++|
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L 412 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM 412 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTC
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccc
Confidence 4566666666666662 222 2556666666777666666653 2666677777777777777666555555666
Q ss_pred eeeccCCCccCCccc-------------------CCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 001983 239 VKLVLRNNALTTLRG-------------------IENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (986)
Q Consensus 239 ~~L~Ls~N~Ls~L~~-------------------L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~ 299 (986)
+.|+|++|.|+.++. +..+++|+.|+|++|+|+.+|. ...+++|+.|+|++|+++..+
T Consensus 413 ~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~---~~~l~~L~~L~Ls~N~l~~~~ 489 (549)
T 2z81_A 413 RFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD---ASLFPVLLVMKISRNQLKSVP 489 (549)
T ss_dssp CEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC---GGGCTTCCEEECCSSCCCCCC
T ss_pred cEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC---cccCccCCEEecCCCccCCcC
Confidence 666666666654321 1367888888888888888774 356889999999999998654
Q ss_pred ccchHHhhhcCCCceeecCCCccChhHH
Q 001983 300 WYRAQVFSYFAHPAKLKVDGKEISTREL 327 (986)
Q Consensus 300 ~~r~~~~~~l~~L~lL~LdgN~Is~~e~ 327 (986)
...+..++.++.++|++|++.|.+.
T Consensus 490 ---~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 490 ---DGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ---TTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ---HHHHhcCcccCEEEecCCCccCCCc
Confidence 3456778999999999999998875
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=4e-22 Score=239.13 Aligned_cols=296 Identities=19% Similarity=0.167 Sum_probs=189.5
Q ss_pred CeEEEecCCCcccch-hhhhccccchhcccCCC-cc---------ccccccccCCCCCCch-----hhHH----HhcCCC
Q 001983 28 SIVLKLNPAGLHYVQ-SRLEALRELERLLAGAP-LD---------YLRAYVSDLGDHRALE-----QLRR----ILKLLT 87 (986)
Q Consensus 28 l~~L~L~~~~L~~Lp-~~L~~L~~Le~L~l~~~-l~---------~l~l~vLdLs~~~~L~-----~Lp~----~L~~L~ 87 (986)
++.|+++.+.+..++ ..+..+++|+.|.+... .. .-.+..++++++.... .+|. .+..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 677777777766554 34556666665554211 10 0111223333221111 1111 345556
Q ss_pred CCcEEEccCCCCCCCCCcCCCCCCCccEEEe----------------------------eCCCCCccchhhHHhhhhhhh
Q 001983 88 SLKVVSALPPPARDPTPLSLLPFCRLKVLEL----------------------------RGCDLSTSAAKGLLELRHTLE 139 (986)
Q Consensus 88 nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdL----------------------------S~N~Lt~~lp~~L~~L~~LL~ 139 (986)
+|++|+|++|.+.+..+..|.++++|++|+| ++|.+++..|..+..++++..
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 6666666666665555555555544444444 444455555666666776666
Q ss_pred hhhccCCCcc-chhhcccc-------------cccc--cCCCCCCCccEEEccCCccc---cchhhhcCCCCCCEEECCC
Q 001983 140 KIICHNSTNA-LRHVFASR-------------IVEI--KDSPQWNRLSFVSCSCNRLV---IMDESLQLLPAVETLDLSR 200 (986)
Q Consensus 140 LLL~~N~L~~-L~~l~~~~-------------l~~L--~~l~~L~sL~~LdLS~N~Lt---~LP~sL~~L~~L~~LdLS~ 200 (986)
+.+.+|.+.. ++...+.. +..+ ..+..+++|+.|++++|.+. .+|..+..+++|+.|+|++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 6666666532 22111111 1111 11234667778888777765 5667788888899999999
Q ss_pred CCCCCCC--CcCCcCCCCeecCCCCCcCCccc---------cccccccceeeccCCCccCCcc--cCCCCCCCCEEEccC
Q 001983 201 NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA---------FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISY 267 (986)
Q Consensus 201 N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~---------l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~ 267 (986)
|+|+.++ .+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|+|+.++ .+..+++|+.|+|++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 9888875 47888889999999998887632 2455788999999999988875 478889999999999
Q ss_pred CCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhh-hcCCCceeecCCCccChhHH
Q 001983 268 NIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS-YFAHPAKLKVDGKEISTREL 327 (986)
Q Consensus 268 N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~-~l~~L~lL~LdgN~Is~~e~ 327 (986)
|.|+.++. ..+..+++|+.|+|++|.++..+ ...+. .++.++.+.|.+|++.|.+.
T Consensus 570 N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 570 NNLNTLPA-SVFNNQVSLKSLNLQKNLITSVE---KKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp SCCCCCCT-TTTTTCTTCCEEECTTSCCCBCC---HHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCcCCH-hHhCCCCCCCEEECCCCcCCccC---hhHhcccccccCEEEccCCCcccCCc
Confidence 99998875 56778889999999999888543 34454 67888999999999988753
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.4e-23 Score=230.47 Aligned_cols=245 Identities=19% Similarity=0.162 Sum_probs=204.9
Q ss_pred ccccccCCCCCCch--hhHHHhcCCCCCcEEEccC-CCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhh
Q 001983 64 RAYVSDLGDHRALE--QLRRILKLLTSLKVVSALP-PPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEK 140 (986)
Q Consensus 64 ~l~vLdLs~~~~L~--~Lp~~L~~L~nLk~L~Ls~-N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~L 140 (986)
++..++++++...+ .+|..+.++++|++|+|++ |.+.+.+|..|..+++|++|+|++|.+++.+|..|..++++..+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45667888887776 7899999999999999995 99999999999999999999999999998899999999998888
Q ss_pred hhccCCCc-cchhhcccccccccCCCCCCCccEEEccCCccc-cchhhhcCCC-CCCEEECCCCCCCC-CC-CcCCcCCC
Q 001983 141 IICHNSTN-ALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLP-AVETLDLSRNKFAK-VD-NLRKCVNL 215 (986)
Q Consensus 141 LL~~N~L~-~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt-~LP~sL~~L~-~L~~LdLS~N~Ls~-L~-~L~~L~~L 215 (986)
.+.+|.+. .++..+ ..+++|++|++++|.++ .+|..+..++ +|+.|+|++|.+++ ++ .+..+. |
T Consensus 131 ~Ls~N~l~~~~p~~~----------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 131 DFSYNALSGTLPPSI----------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp ECCSSEEESCCCGGG----------GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred eCCCCccCCcCChHH----------hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 88888765 233222 24679999999999999 8999999998 99999999999984 34 677776 9
Q ss_pred CeecCCCCCcCCcc-ccccccccceeeccCCCccCCc-ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCC
Q 001983 216 KHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTL-RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (986)
Q Consensus 216 ~~LdLS~N~Ls~L~-~l~~~L~sL~~L~Ls~N~Ls~L-~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~N 293 (986)
+.|+|++|.+++.. ..+..+++|+.|+|++|.++.. +.+..+++|+.|+|++|.|++..+ ..+..+++|+.|+|++|
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC-GGGGGCTTCCEEECCSS
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC-hHHhcCcCCCEEECcCC
Confidence 99999999998654 4566789999999999999864 678889999999999999984322 67889999999999999
Q ss_pred CCCCCcccchHHhhhcCCCceeecCCCccCh
Q 001983 294 PLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 294 pLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~ 324 (986)
+++.... . ...++.++.+.+.+|+.-|
T Consensus 279 ~l~~~ip---~-~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 279 NLCGEIP---Q-GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EEEEECC---C-STTGGGSCGGGTCSSSEEE
T ss_pred cccccCC---C-CccccccChHHhcCCCCcc
Confidence 9984421 1 1467788999999998644
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=1.5e-22 Score=219.65 Aligned_cols=237 Identities=16% Similarity=0.097 Sum_probs=187.9
Q ss_pred chhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCcc--chhhHHhhhhhhhhhhccCCCccchhh
Q 001983 76 LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTS--AAKGLLELRHTLEKIICHNSTNALRHV 153 (986)
Q Consensus 76 L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~--lp~~L~~L~~LL~LLL~~N~L~~L~~l 153 (986)
+..+|..+ .++|++|+|++|.+....+..|..+++|++|+|++|.++.. .+..+..++++..+.+.+|.+..++..
T Consensus 19 l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 96 (306)
T 2z66_A 19 LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 96 (306)
T ss_dssp CSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred cccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh
Confidence 45555533 36888999998888866666678889999999999988753 356777777777777888876655432
Q ss_pred cccccccccCCCCCCCccEEEccCCccccchh--hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCC--
Q 001983 154 FASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRS-- 227 (986)
Q Consensus 154 ~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~--sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~-- 227 (986)
+ ..+++|++|++++|.++.++. .+..+++|++|++++|.+..+. .+..+++|+.|+|++|.++.
T Consensus 97 ~----------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 97 F----------LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp E----------ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred c----------CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 2 246789999999999998764 7889999999999999988653 58889999999999999986
Q ss_pred ccccccccccceeeccCCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHH
Q 001983 228 IAAFSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQV 305 (986)
Q Consensus 228 L~~l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~ 305 (986)
++..+..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.... ...
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~ 242 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSK---KQE 242 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCBCS---SSS
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcccC---HHH
Confidence 566677789999999999999987 368889999999999999998875 45788999999999999998653 223
Q ss_pred hhhc-CCCceeecCCCccChhHHH
Q 001983 306 FSYF-AHPAKLKVDGKEISTRELW 328 (986)
Q Consensus 306 ~~~l-~~L~lL~LdgN~Is~~e~~ 328 (986)
+..+ +.++.++|.+|++.+.+..
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECSGGG
T ss_pred HHhhhccCCEEEccCCCeecccCh
Confidence 4445 4789999999999887643
No 24
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=2.5e-22 Score=215.98 Aligned_cols=205 Identities=20% Similarity=0.170 Sum_probs=112.5
Q ss_pred CCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCC-CccchhhcccccccccCC
Q 001983 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVFASRIVEIKDS 164 (986)
Q Consensus 86 L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~-L~~L~~l~~~~l~~L~~l 164 (986)
.++|+.|+|++|.+....+..|..+++|++|+|++|.+++..|..|..++++..+.+.+|. +..+... .+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~---------~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA---------TF 101 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT---------TT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH---------Hh
Confidence 3456666666666665555556666666666666666655444444433322222222221 1111100 01
Q ss_pred CCCCCccEEEccCCccccc-hhhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-ccccccccee
Q 001983 165 PQWNRLSFVSCSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVK 240 (986)
Q Consensus 165 ~~L~sL~~LdLS~N~Lt~L-P~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~ 240 (986)
..+++|++|++++|.++.+ |..+..+++|++|+|++|.++.++ .+..+++|+.|+|++|.|+.++. .+..+++|+.
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 1234566666666666644 334566666666666666666554 35566666666666666665554 2344566666
Q ss_pred eccCCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001983 241 LVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (986)
Q Consensus 241 L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~ 300 (986)
|+|++|.|+.+ ..+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|+|.
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEECSGG
T ss_pred EECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCCccCCCC
Confidence 66666666654 255566666666666666666553 445666666666666666666653
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1e-21 Score=226.43 Aligned_cols=269 Identities=23% Similarity=0.276 Sum_probs=152.4
Q ss_pred ccCCeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCC
Q 001983 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (986)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP 104 (986)
+..++.|++..+.+..+|. +..+++|+.|.+ ++|. +..++. +.++++|++|+|++|.+.+..+
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~L--------------s~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 107 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINF--------------SNNQ-LTDITP-LKNLTKLVDILMNNNQIADITP 107 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEEC--------------CSSC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEEC--------------CCCc-cCCchh-hhccccCCEEECCCCccccChh
Confidence 4567899999999988874 666666665543 3332 222332 5555555555555555554333
Q ss_pred cCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhc----------ccccccccCCCCCCCccEEE
Q 001983 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVF----------ASRIVEIKDSPQWNRLSFVS 174 (986)
Q Consensus 105 ~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~----------~~~l~~L~~l~~L~sL~~Ld 174 (986)
+..+++|++|+|++|.+++..+ +..++++..+.+.+|.+..++... ...+..+..+..+++|+.|+
T Consensus 108 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 108 --LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 183 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEE
T ss_pred --hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEE
Confidence 5555555555555555555322 455555544445554443332210 00111112234556677777
Q ss_pred ccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcccC
Q 001983 175 CSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGI 254 (986)
Q Consensus 175 LS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L 254 (986)
+++|.++.++ .+..+++|+.|++++|.+..++.+..+++|+.|++++|.++.++.+ ..+++|+.|++++|.++.++.+
T Consensus 184 l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l-~~l~~L~~L~l~~n~l~~~~~~ 261 (466)
T 1o6v_A 184 ISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL-ASLTNLTDLDLANNQISNLAPL 261 (466)
T ss_dssp CCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG-GGCTTCSEEECCSSCCCCCGGG
T ss_pred CcCCcCCCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhh-hcCCCCCEEECCCCccccchhh
Confidence 7777766653 3566666777777777666665566666666666666666665432 3346666666666666665556
Q ss_pred CCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccCh
Q 001983 255 ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 255 ~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~ 324 (986)
..+++|+.|+|++|.++.+++ +..+++|+.|++++|.+...+. +..++.|+.+.|.+|.+..
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG-----GGGCTTCSEEECCSSCCSC
T ss_pred hcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh-----hcCCCCCCEEECcCCcCCC
Confidence 666666666666666666542 4556666666666666654321 3445556666666665554
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=4.9e-22 Score=218.63 Aligned_cols=263 Identities=17% Similarity=0.150 Sum_probs=191.7
Q ss_pred CCeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcC
Q 001983 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLS 106 (986)
Q Consensus 27 ~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~s 106 (986)
.++.+++..+.+..+|..+. ++| ..++++++......|..+.++++|++|+|++|.+.+..|..
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l--------------~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 97 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDT--------------TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA 97 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTC--------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred cCCEEECCCCCccccCCCCC--CCC--------------eEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH
Confidence 46789999999888886542 222 33566666544433557888999999999999998888888
Q ss_pred CCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccc---cc
Q 001983 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV---IM 183 (986)
Q Consensus 107 f~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt---~L 183 (986)
|..+++|++|+|++|.++. +|..+. +++..+.+.+|.+..++...+ ..+++|+.|++++|.++ ..
T Consensus 98 ~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVF---------SGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp STTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGG---------SSCSSCCEEECCSCCCBGGGSC
T ss_pred hhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHh---------CCCccCCEEECCCCccccCCCC
Confidence 9999999999999999886 444333 455666677777665554322 24668888999988886 34
Q ss_pred hhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCcc--cCCCCCCC
Q 001983 184 DESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (986)
Q Consensus 184 P~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL 260 (986)
|..+..+ +|+.|++++|.++.++.-. .++|+.|+|++|.++.+++ .+..+++|+.|+|++|+|+.++ .+..+++|
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSSCCSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred cccccCC-ccCEEECcCCCCCccCccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence 4566666 8888888888888876311 2688888888888887763 4556788888888888888874 57888888
Q ss_pred CEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhh------hcCCCceeecCCCccCh
Q 001983 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS------YFAHPAKLKVDGKEIST 324 (986)
Q Consensus 261 ~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~------~l~~L~lL~LdgN~Is~ 324 (986)
+.|+|++|.|+.+| ..+..+++|+.|++++|+|+..+. ..+. ....++.+.+.+|++..
T Consensus 244 ~~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 244 RELHLDNNKLSRVP--AGLPDLKLLQVVYLHTNNITKVGV---NDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp CEEECCSSCCCBCC--TTGGGCTTCCEEECCSSCCCBCCT---TSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred CEEECCCCcCeecC--hhhhcCccCCEEECCCCCCCccCh---hHccccccccccccccceEeecCcccc
Confidence 88888888888876 457788888888888888875532 1111 13457778888888764
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1.2e-21 Score=231.75 Aligned_cols=125 Identities=12% Similarity=0.037 Sum_probs=66.7
Q ss_pred cCCeEEEecCCCcccc-hhhhhccccchhcccCCC-cc---------ccccccccCCCCCCchhhHHHhcCCCCCcEEEc
Q 001983 26 EGSIVLKLNPAGLHYV-QSRLEALRELERLLAGAP-LD---------YLRAYVSDLGDHRALEQLRRILKLLTSLKVVSA 94 (986)
Q Consensus 26 ~~l~~L~L~~~~L~~L-p~~L~~L~~Le~L~l~~~-l~---------~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~L 94 (986)
..+++|+++.+.+..+ |..+..+++|+.|.+..+ .. .-.+..+++++|.....-|..+.++++|++|+|
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 3455555555555444 334455555555443211 10 011233445544433322445566666666666
Q ss_pred cCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhh--hhhhccCCCccc
Q 001983 95 LPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTL--EKIICHNSTNAL 150 (986)
Q Consensus 95 s~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL--~LLL~~N~L~~L 150 (986)
++|.+.+..++.+..+++|++|+|++|.+++..|..+..++.+. .+.+.+|.+..+
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc
Confidence 66666654434455577777777777777766666777776654 455566655443
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=7.4e-22 Score=245.47 Aligned_cols=291 Identities=15% Similarity=0.144 Sum_probs=227.3
Q ss_pred cccCCeEEEecCCC-cccchhhhhccccchhcccCCC--ccc---------c--------ccccccCCCCCCchhhHH--
Q 001983 24 LIEGSIVLKLNPAG-LHYVQSRLEALRELERLLAGAP--LDY---------L--------RAYVSDLGDHRALEQLRR-- 81 (986)
Q Consensus 24 lL~~l~~L~L~~~~-L~~Lp~~L~~L~~Le~L~l~~~--l~~---------l--------~l~vLdLs~~~~L~~Lp~-- 81 (986)
-+..++.|++..+. ...+|..+..|++|+.|.+..+ +.. + .+..+++++|... .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 46778999999886 5688999999999999887543 221 1 4567888888766 8888
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhh-hhhhhhccCCCccchhhcccc---
Q 001983 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRH-TLEKIICHNSTNALRHVFASR--- 157 (986)
Q Consensus 82 ~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~-LL~LLL~~N~L~~L~~l~~~~--- 157 (986)
.+.++++|+.|+|++|.+. .+| .|..+++|+.|+|++|.++ .+|..+..++. +..+.+.+|.+..++..+...
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 8999999999999999998 777 8999999999999999998 68888999988 888889999887776543211
Q ss_pred -cccc-----------cCCC------CCCCccEEEccCCccccchhhh-cCCCCCCEEECCCCCCCCCC-CcC-------
Q 001983 158 -IVEI-----------KDSP------QWNRLSFVSCSCNRLVIMDESL-QLLPAVETLDLSRNKFAKVD-NLR------- 210 (986)
Q Consensus 158 -l~~L-----------~~l~------~L~sL~~LdLS~N~Lt~LP~sL-~~L~~L~~LdLS~N~Ls~L~-~L~------- 210 (986)
+..+ +.+. .+++|+.|+|++|.|+.+|..+ ..+++|+.|+|++|+|+.+| .+.
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence 1110 1111 3348999999999999888765 47899999999999998876 222
Q ss_pred -CcCCCCeecCCCCCcCCcccccc--ccccceeeccCCCccCCcc-cCCCCCCCCEEEccC------CCCCCCchhhhhc
Q 001983 211 -KCVNLKHLDLGFNNLRSIAAFSE--VSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISY------NIISTFSELEFLA 280 (986)
Q Consensus 211 -~L~~L~~LdLS~N~Ls~L~~l~~--~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~------N~Ls~lp~l~~L~ 280 (986)
++++|+.|+|++|+|+.+|.... .+++|+.|+|++|+|+.+| .+..+++|+.|+|++ |.+....+ ..+.
T Consensus 725 ~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~ 803 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP-TGIT 803 (876)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGG
T ss_pred cccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccCh-HHHh
Confidence 33489999999999998887665 7889999999999999885 678899999999976 55554322 5678
Q ss_pred CCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChh
Q 001983 281 SLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (986)
Q Consensus 281 ~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~ 325 (986)
.+++|+.|+|++|++...+. . ..+.|+.++|.+|++...
T Consensus 804 ~L~~L~~L~Ls~N~L~~Ip~---~---l~~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDIRKVDE---K---LTPQLYILDIADNPNISI 842 (876)
T ss_dssp GCSSCCEEECCSSCCCBCCS---C---CCSSSCEEECCSCTTCEE
T ss_pred cCCCCCEEECCCCCCCccCH---h---hcCCCCEEECCCCCCCcc
Confidence 89999999999999965442 1 236789999999988654
No 29
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=8.8e-22 Score=211.78 Aligned_cols=232 Identities=16% Similarity=0.145 Sum_probs=193.6
Q ss_pred cEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCC
Q 001983 90 KVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNR 169 (986)
Q Consensus 90 k~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~s 169 (986)
+.++.+++.+.. +|..+ .++|++|+|++|.+++..+..|..++++..+.+.+|.+..+.... +..+++
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---------~~~l~~ 81 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA---------FTGLAL 81 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT---------TTTCTT
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh---------cCCccC
Confidence 678888888874 45433 479999999999999988888999998888888888776653321 235679
Q ss_pred ccEEEccCCc-cccc-hhhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccC
Q 001983 170 LSFVSCSCNR-LVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLR 244 (986)
Q Consensus 170 L~~LdLS~N~-Lt~L-P~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls 244 (986)
|++|++++|. ++.+ |..+..+++|++|+|++|.++.++ .+..+++|+.|+|++|.++.++. .+..+++|+.|+|+
T Consensus 82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC
Confidence 9999999997 8877 568999999999999999999874 58899999999999999999876 35668999999999
Q ss_pred CCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCcc
Q 001983 245 NNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 322 (986)
Q Consensus 245 ~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~I 322 (986)
+|+|+.++ .+..+++|+.|+|++|.|+.+.+ ..+..+++|+.|+|++|.++..+ ...+..++.++.++|.+|++
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALP---TEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---HHHHTTCTTCCEEECCSSCE
T ss_pred CCcccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcCC---HHHcccCcccCEEeccCCCc
Confidence 99999985 48999999999999999998754 67889999999999999998654 45677889999999999999
Q ss_pred ChhHHHHHHHHHHhh
Q 001983 323 STRELWERQLIIARR 337 (986)
Q Consensus 323 s~~e~~~~~~l~~~~ 337 (986)
.+.+...+...+...
T Consensus 238 ~c~~~~~~~~~~l~~ 252 (285)
T 1ozn_A 238 VCDCRARPLWAWLQK 252 (285)
T ss_dssp ECSGGGHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHh
Confidence 987765544333333
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=5.6e-22 Score=217.70 Aligned_cols=252 Identities=17% Similarity=0.172 Sum_probs=207.5
Q ss_pred chhcccCCCcccccc-ccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchh
Q 001983 51 LERLLAGAPLDYLRA-YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAK 129 (986)
Q Consensus 51 Le~L~l~~~l~~l~l-~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~ 129 (986)
++.....|+..+.+. ..++++++. +..+|..+ .++|+.|+|++|.+++..+..|.++++|++|+|++|.+++..|.
T Consensus 18 i~~~~~~cp~~c~c~l~~l~~~~~~-l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (330)
T 1xku_A 18 IEPMGPVCPFRCQCHLRVVQCSDLG-LEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 94 (330)
T ss_dssp ----CCCCCTTCEEETTEEECTTSC-CCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT
T ss_pred cccccCCCCCCCcCCCeEEEecCCC-ccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH
Confidence 334444555555432 456666544 45566543 37899999999999988888999999999999999999998899
Q ss_pred hHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCC--C
Q 001983 130 GLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAK--V 206 (986)
Q Consensus 130 ~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~--L 206 (986)
.|..++++..+.+.+|.+..++..+ .++|+.|++++|.++.++. .+..+++|+.|++++|.+.. +
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~l~~~~------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 162 (330)
T 1xku_A 95 AFAPLVKLERLYLSKNQLKELPEKM------------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162 (330)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCSSC------------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred HhcCCCCCCEEECCCCcCCccChhh------------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc
Confidence 9999999888889999877665432 2589999999999997765 68999999999999999974 2
Q ss_pred --CCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCC
Q 001983 207 --DNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASL 282 (986)
Q Consensus 207 --~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L 282 (986)
..+..+++|+.|++++|.++.++.... ++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+.++. ..+..+
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l 239 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANT 239 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGS
T ss_pred ChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCC
Confidence 378899999999999999999886443 7899999999999987 378999999999999999998864 568899
Q ss_pred CCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccCh
Q 001983 283 PYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 283 ~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~ 324 (986)
++|+.|+|++|+++..+ ..+..++.++.++|.+|+++.
T Consensus 240 ~~L~~L~L~~N~l~~lp----~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 240 PHLRELHLNNNKLVKVP----GGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TTCCEEECCSSCCSSCC----TTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCEEECCCCcCccCC----hhhccCCCcCEEECCCCcCCc
Confidence 99999999999998654 235678899999999999974
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.6e-23 Score=230.02 Aligned_cols=244 Identities=21% Similarity=0.210 Sum_probs=206.4
Q ss_pred CCeEEEecCCCcc---cchhhhhccccchhcccCCCccccccccccCCC-CCCchhhHHHhcCCCCCcEEEccCCCCCCC
Q 001983 27 GSIVLKLNPAGLH---YVQSRLEALRELERLLAGAPLDYLRAYVSDLGD-HRALEQLRRILKLLTSLKVVSALPPPARDP 102 (986)
Q Consensus 27 ~l~~L~L~~~~L~---~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~-~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~ 102 (986)
..+.|++..+.+. .+|..+..+++|+.| ++++ +...+.+|..+.++++|++|+|++|.+.+.
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L--------------~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFL--------------YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEE--------------EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCee--------------eCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc
Confidence 4678899999887 588888887776655 4443 445557888899999999999999999989
Q ss_pred CCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCc-cchhhcccccccccCCCCCC-CccEEEccCCcc
Q 001983 103 TPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTN-ALRHVFASRIVEIKDSPQWN-RLSFVSCSCNRL 180 (986)
Q Consensus 103 lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~-~L~~l~~~~l~~L~~l~~L~-sL~~LdLS~N~L 180 (986)
+|..|..+++|++|+|++|.+++.+|..+..++++..+.+.+|.+. .++..+. .++ +|+.|++++|.+
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~----------~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG----------SFSKLFTSMTISRNRL 186 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG----------CCCTTCCEEECCSSEE
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh----------hhhhcCcEEECcCCee
Confidence 9999999999999999999999889999999999888889988765 3333222 344 899999999999
Q ss_pred c-cchhhhcCCCCCCEEECCCCCCCCC-C-CcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCC-cc-cCC
Q 001983 181 V-IMDESLQLLPAVETLDLSRNKFAKV-D-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT-LR-GIE 255 (986)
Q Consensus 181 t-~LP~sL~~L~~L~~LdLS~N~Ls~L-~-~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~-L~-~L~ 255 (986)
+ .+|..+..+. |+.|+|++|.++.. + .+..+++|+.|+|++|.++..++....+++|+.|+|++|+|++ ++ .+.
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHh
Confidence 9 8888898887 99999999999864 3 7889999999999999999877666678999999999999984 44 789
Q ss_pred CCCCCCEEEccCCCCCC-CchhhhhcCCCCCcEEEecCCCCCCC
Q 001983 256 NLKSLEGLDISYNIIST-FSELEFLASLPYLLNLWLEGNPLCCS 298 (986)
Q Consensus 256 ~L~sL~~LdLS~N~Ls~-lp~l~~L~~L~~L~~L~Ls~NpLt~~ 298 (986)
.+++|+.|+|++|.|++ +|. ...+++|+.|++++|+..|.
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~---~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCC---STTGGGSCGGGTCSSSEEES
T ss_pred cCcCCCEEECcCCcccccCCC---CccccccChHHhcCCCCccC
Confidence 99999999999999984 442 47899999999999995544
No 32
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=1.7e-22 Score=221.75 Aligned_cols=236 Identities=17% Similarity=0.180 Sum_probs=189.6
Q ss_pred ccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCC
Q 001983 68 SDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST 147 (986)
Q Consensus 68 LdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L 147 (986)
.+++.+.....++..+..+++|++|+|++|.+.+..|..|..+++|++|+|++|.+++..+ +..++++..+.+.+|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 4555555444445566777888888888888888777888888888888888888877554 77777777777777765
Q ss_pred ccchhhcccccccccCCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCc
Q 001983 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNL 225 (986)
Q Consensus 148 ~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~L 225 (986)
..++ ..++|+.|++++|.++.++.. .+++|+.|++++|+++.++ .+..+++|+.|+|++|.+
T Consensus 93 ~~l~--------------~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 93 QELL--------------VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp EEEE--------------ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred cccc--------------CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 4433 135899999999999977643 4788999999999999874 688899999999999999
Q ss_pred CCccc--cccccccceeeccCCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccch
Q 001983 226 RSIAA--FSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRA 303 (986)
Q Consensus 226 s~L~~--l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~ 303 (986)
+.+++ +...+++|+.|+|++|.|+.++....+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|+++..+
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~L~L~~N~l~~l~---- 230 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIE---- 230 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEEC----
T ss_pred CcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchh--hhcccCcccEEECcCCcccchh----
Confidence 98754 334578999999999999998877789999999999999999874 4788999999999999998544
Q ss_pred HHhhhcCCCceeecCCCccChhHH
Q 001983 304 QVFSYFAHPAKLKVDGKEISTREL 327 (986)
Q Consensus 304 ~~~~~l~~L~lL~LdgN~Is~~e~ 327 (986)
..+..++.++.++|++|++.+...
T Consensus 231 ~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp TTCCCCTTCCEEECTTCCCBHHHH
T ss_pred hHhhcCCCCCEEEccCCCccCcCH
Confidence 235677889999999999996643
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=2.4e-22 Score=237.55 Aligned_cols=271 Identities=15% Similarity=0.110 Sum_probs=213.9
Q ss_pred ccCCeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCC
Q 001983 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (986)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP 104 (986)
+..++.|++..+.+..+| .+..+++|+ .+++.+|.. +.+| .+ .+++|+.|++++|......
T Consensus 284 l~~L~~L~l~~~~~~~l~-~l~~~~~L~--------------~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLE-DVPKHFKWQ--------------SLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp GTTCSEEEEESCCCCCCC-CCCTTCCCS--------------EEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-
T ss_pred CCCCCEEEecCccchhhh-hccccccCC--------------EEEcccccC-cccc-cC-CCCccceeeccCCcCccch-
Confidence 344556666666655555 344433333 345556655 6677 34 8999999999999655433
Q ss_pred cCCCCCCCccEEEeeCCCCCcc--chhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCcccc
Q 001983 105 LSLLPFCRLKVLELRGCDLSTS--AAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI 182 (986)
Q Consensus 105 ~sf~~L~nL~~LdLS~N~Lt~~--lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~ 182 (986)
.+..+++|++|+|++|.+++. .|..+..++.+..+.+.+|.+..++. .+..+++|+.|++++|.+..
T Consensus 345 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----------~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA----------NFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp -CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECC----------CCTTCTTCCEEECTTSEEES
T ss_pred -hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchh----------hccCCCCCCeeECCCCccCC
Confidence 677899999999999999875 37888888888888888887665542 23357799999999999996
Q ss_pred chh--hhcCCCCCCEEECCCCCCCCC-C-CcCCcCCCCeecCCCCCcCC--ccccccccccceeeccCCCccCCcc--cC
Q 001983 183 MDE--SLQLLPAVETLDLSRNKFAKV-D-NLRKCVNLKHLDLGFNNLRS--IAAFSEVSCHIVKLVLRNNALTTLR--GI 254 (986)
Q Consensus 183 LP~--sL~~L~~L~~LdLS~N~Ls~L-~-~L~~L~~L~~LdLS~N~Ls~--L~~l~~~L~sL~~L~Ls~N~Ls~L~--~L 254 (986)
++. .+..+++|+.|++++|.+... + .+..+++|+.|+|++|.+++ ++..+..+++|+.|+|++|+|+.++ .+
T Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 654 788999999999999999874 3 68999999999999999987 5666777899999999999999863 68
Q ss_pred CCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcC-CCceeecCCCccChhHHHHH
Q 001983 255 ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA-HPAKLKVDGKEISTRELWER 330 (986)
Q Consensus 255 ~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~-~L~lL~LdgN~Is~~e~~~~ 330 (986)
..+++|+.|+|++|.++.+++ ..+..+++|+.|+|++|+++..+. . +..++ .++.+++.+|++.|.+...+
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~p~---~-~~~l~~~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRIETSKG---I-LQHFPKSLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSCCCCEES---C-GGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred cccccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCcCcccCH---h-HhhhcccCcEEEccCCCcccCCccHH
Confidence 999999999999999999854 678999999999999999986542 2 55565 59999999999998775443
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=2.9e-21 Score=222.64 Aligned_cols=262 Identities=21% Similarity=0.263 Sum_probs=158.5
Q ss_pred ccccCCeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCC
Q 001983 23 PLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDP 102 (986)
Q Consensus 23 ~lL~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~ 102 (986)
..+..++.|+++.+.+..+|. +..+++|+.|.. ++|.. ..++. +.++++|++|+|++|.+.+.
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l--------------~~n~l-~~~~~-~~~l~~L~~L~L~~n~l~~~ 127 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILM--------------NNNQI-ADITP-LANLTNLTGLTLFNNQITDI 127 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC--------------CSSCC-CCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred hhhcCCCEEECCCCccCCchh-hhccccCCEEEC--------------CCCcc-ccChh-hcCCCCCCEEECCCCCCCCC
Confidence 346678999999999999887 777777776654 22222 22222 55666666666666666544
Q ss_pred CCcCCCCCCCccEEEeeCCCCCccch-------------------hhHHhhhhhhhhhhccCCCccchhhcccccccccC
Q 001983 103 TPLSLLPFCRLKVLELRGCDLSTSAA-------------------KGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (986)
Q Consensus 103 lP~sf~~L~nL~~LdLS~N~Lt~~lp-------------------~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~ 163 (986)
.+ +..+++|++|+|++|.+++..+ ..+..++.+..+.+.+|.+..++ .
T Consensus 128 ~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~ 194 (466)
T 1o6v_A 128 DP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-----------V 194 (466)
T ss_dssp GG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-----------G
T ss_pred hH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-----------h
Confidence 32 5666666666666666554211 01333333333334444333322 2
Q ss_pred CCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeecc
Q 001983 164 SPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (986)
Q Consensus 164 l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~L 243 (986)
+..+++|++|++++|.+..++. +..+++|+.|++++|.++.++.+..+++|+.|++++|.++.+++ ...+++|+.|+|
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 272 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKL 272 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEEC
Confidence 2345667777777777765543 55666777777777777666666666777777777776666655 334566677777
Q ss_pred CCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 244 RNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 244 s~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
++|.++.++.+..+++|+.|+|++|.++.+++ +..+++|+.|+|++|++..... +..++.|+.+.+.+|.+.
T Consensus 273 ~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 273 GANQISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCSSCCC
T ss_pred CCCccCccccccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh-----hccCccCCEeECCCCccC
Confidence 77766666556666666666666666666543 4566666666666666654431 345566666666666665
Q ss_pred h
Q 001983 324 T 324 (986)
Q Consensus 324 ~ 324 (986)
.
T Consensus 345 ~ 345 (466)
T 1o6v_A 345 D 345 (466)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=8.7e-22 Score=216.66 Aligned_cols=237 Identities=16% Similarity=0.144 Sum_probs=198.7
Q ss_pred ccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccC
Q 001983 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (986)
Q Consensus 66 ~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N 145 (986)
..++++++. +..+|..+ .++|+.|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|..++++..+.+.+|
T Consensus 36 ~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 36 RVVQCSDLG-LKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CEEECCCCC-ccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 445666553 45677644 478999999999999888889999999999999999999988999999999888889888
Q ss_pred CCccchhhcccccccccCCCCCCCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCC--C--CCcCCcCCCCeecC
Q 001983 146 STNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAK--V--DNLRKCVNLKHLDL 220 (986)
Q Consensus 146 ~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~--L--~~L~~L~~L~~LdL 220 (986)
.+..++..++ ++|++|++++|.++.+|. .+..+++|+.|++++|.++. + ..+..+ +|+.|++
T Consensus 113 ~l~~l~~~~~------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 113 HLVEIPPNLP------------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp CCCSCCSSCC------------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred cCCccCcccc------------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 8776654322 589999999999998876 58899999999999999964 2 356666 9999999
Q ss_pred CCCCcCCccccccccccceeeccCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001983 221 GFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (986)
Q Consensus 221 S~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~ 298 (986)
++|.++.++.... ++|+.|+|++|.++.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.++..
T Consensus 180 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l 256 (332)
T 2ft3_A 180 SEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLSRV 256 (332)
T ss_dssp CSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCCBC
T ss_pred cCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCeec
Confidence 9999999876443 78999999999999874 78999999999999999999875 5688999999999999999855
Q ss_pred cccchHHhhhcCCCceeecCCCccChh
Q 001983 299 RWYRAQVFSYFAHPAKLKVDGKEISTR 325 (986)
Q Consensus 299 ~~~r~~~~~~l~~L~lL~LdgN~Is~~ 325 (986)
+ ..+..++.|+.++|.+|+++..
T Consensus 257 p----~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 257 P----AGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp C----TTGGGCTTCCEEECCSSCCCBC
T ss_pred C----hhhhcCccCCEEECCCCCCCcc
Confidence 4 2366788999999999999854
No 36
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=4.5e-22 Score=243.89 Aligned_cols=225 Identities=20% Similarity=0.181 Sum_probs=159.1
Q ss_pred CCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCcc-chhhcccccccccCC
Q 001983 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNA-LRHVFASRIVEIKDS 164 (986)
Q Consensus 86 L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~-L~~l~~~~l~~L~~l 164 (986)
+++|++|+|++|.+++.+|..|..+++|++|+|++|.+++.+|..+..++++..+.+.+|.+.. ++.. +
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~----------~ 462 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE----------L 462 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG----------G
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH----------H
Confidence 4445555555555544555555555555555555555555555555555554444455444331 1111 1
Q ss_pred CCCCCccEEEccCCccc-cchhhhcCCCCCCEEECCCCCCCC-CC-CcCCcCCCCeecCCCCCcCC-cccccccccccee
Q 001983 165 PQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVK 240 (986)
Q Consensus 165 ~~L~sL~~LdLS~N~Lt-~LP~sL~~L~~L~~LdLS~N~Ls~-L~-~L~~L~~L~~LdLS~N~Ls~-L~~l~~~L~sL~~ 240 (986)
..+++|+.|++++|+++ .+|..+..+++|+.|+|++|++++ +| .+..+++|+.|+|++|.+++ +|..+..+++|+.
T Consensus 463 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 24668899999999888 778888889999999999999885 44 68888999999999999884 5556667889999
Q ss_pred eccCCCccCC-cc-------------------------------------------------------------------
Q 001983 241 LVLRNNALTT-LR------------------------------------------------------------------- 252 (986)
Q Consensus 241 L~Ls~N~Ls~-L~------------------------------------------------------------------- 252 (986)
|+|++|.+++ +|
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 9999998763 22
Q ss_pred ----cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccCh
Q 001983 253 ----GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 253 ----~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~ 324 (986)
.+..+++|+.|+|++|.+++..+ ..++.++.|+.|+|++|.++... +..+..++.|+.++|.+|.++.
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~i---p~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIP-KEIGSMPYLFILNLGHNDISGSI---PDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCC-GGGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSSCCEE
T ss_pred cCchhhhccccccEEECcCCcccccCC-HHHhccccCCEEeCcCCccCCCC---ChHHhCCCCCCEEECCCCcccC
Confidence 23446788999999999986443 67899999999999999998542 3557788999999999998874
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1.6e-21 Score=229.76 Aligned_cols=161 Identities=21% Similarity=0.175 Sum_probs=129.3
Q ss_pred CCCCCccEEEccCCcccc-chhhhcCCCCCCEEECCCCCCCCCC----CcCCcCCCCeecCCCCCcCC-ccc-ccccccc
Q 001983 165 PQWNRLSFVSCSCNRLVI-MDESLQLLPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRS-IAA-FSEVSCH 237 (986)
Q Consensus 165 ~~L~sL~~LdLS~N~Lt~-LP~sL~~L~~L~~LdLS~N~Ls~L~----~L~~L~~L~~LdLS~N~Ls~-L~~-l~~~L~s 237 (986)
..+++|++|++++|.++. +|..+..+++|+.|+|++|+++.++ .+..+++|+.|+|++|.++. ++. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 456788888888888884 6778888889999999999888764 47888889999999998887 665 3555788
Q ss_pred ceeeccCCCccCCcccCCCC-CCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceee
Q 001983 238 IVKLVLRNNALTTLRGIENL-KSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLK 316 (986)
Q Consensus 238 L~~L~Ls~N~Ls~L~~L~~L-~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~ 316 (986)
|+.|+|++|+|+... +..+ ++|+.|+|++|.|+.+| ..+..+++|+.|+|++|.++..+. ..+..++.++.++
T Consensus 430 L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N~l~~ip--~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L~ 503 (562)
T 3a79_B 430 ILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIMSIP--KDVTHLQALQELNVASNQLKSVPD---GVFDRLTSLQYIW 503 (562)
T ss_dssp CCEEECCSSCCCGGG-GSSCCTTCSEEECCSSCCCCCC--TTTTSSCCCSEEECCSSCCCCCCT---TSTTTCTTCCCEE
T ss_pred CCEEECCCCCCCcch-hhhhcCcCCEEECCCCcCcccC--hhhcCCCCCCEEECCCCCCCCCCH---HHHhcCCCCCEEE
Confidence 999999999887631 1223 68999999999999988 445599999999999999996552 3467788999999
Q ss_pred cCCCccChhHHHHHH
Q 001983 317 VDGKEISTRELWERQ 331 (986)
Q Consensus 317 LdgN~Is~~e~~~~~ 331 (986)
|.+|++.|.+...+.
T Consensus 504 l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 504 LHDNPWDCTCPGIRY 518 (562)
T ss_dssp CCSCCBCCCHHHHHH
T ss_pred ecCCCcCCCcchHHH
Confidence 999999998765543
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=1.3e-22 Score=220.07 Aligned_cols=267 Identities=20% Similarity=0.229 Sum_probs=202.6
Q ss_pred eEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHH-HhcCCCCCcEEEccCCCCCCC--CCc
Q 001983 29 IVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRR-ILKLLTSLKVVSALPPPARDP--TPL 105 (986)
Q Consensus 29 ~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~-~L~~L~nLk~L~Ls~N~Ls~~--lP~ 105 (986)
..++.+...+..+|..+. ++|+ .++++++. +..+|. .+.++++|++|+|++|.+... .|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~--------------~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 72 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSAT--------------RLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCC--------------EEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH
T ss_pred CEEEcCCCCcccCCCCCC--CCCC--------------EEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCccc
Confidence 357777888888776432 2222 34555554 334554 478899999999999998733 356
Q ss_pred CCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCcccc-ch
Q 001983 106 SLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI-MD 184 (986)
Q Consensus 106 sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~-LP 184 (986)
.+..+++|++|+|++|.++. +|..+..++++..+.+.+|.+..++.. ..+..+++|++|++++|.+.. .|
T Consensus 73 ~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF--------SVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp HHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTT--------TTTTTCTTCCEEECTTSCCEECST
T ss_pred ccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccc--------hhhhhccCCCEEECCCCcCCccch
Confidence 67788999999999999876 566678888877777888866555431 123457799999999999994 45
Q ss_pred hhhcCCCCCCEEECCCCCCCC--CC-CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCcc--cCCCCC
Q 001983 185 ESLQLLPAVETLDLSRNKFAK--VD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLK 258 (986)
Q Consensus 185 ~sL~~L~~L~~LdLS~N~Ls~--L~-~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~ 258 (986)
..+..+++|+.|+|++|.+.. ++ .+..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|.|+.++ .+..++
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 578999999999999999986 44 78999999999999999998854 5666899999999999999974 688999
Q ss_pred CCCEEEccCCCCCCCchhhhhcCCC-CCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 259 SLEGLDISYNIISTFSELEFLASLP-YLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 259 sL~~LdLS~N~Ls~lp~l~~L~~L~-~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
+|+.|+|++|.|+..++ ..+..++ +|+.|+|++|+|.|+|.... ....++..+.+.++.+.+.
T Consensus 224 ~L~~L~L~~N~l~~~~~-~~~~~~~~~L~~L~L~~N~~~~~c~~~~-~~~~l~~~~~~~~~~~~~~ 287 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKK-QELQHFPSSLAFLNLTQNDFACTCEHQS-FLQWIKDQRQLLVEVERME 287 (306)
T ss_dssp TCCEEECTTSCCCBCSS-SSCCCCCTTCCEEECTTCCEECSGGGHH-HHHHHHHTGGGBSCGGGCB
T ss_pred cCCEeECCCCCCcccCH-HHHHhhhccCCEEEccCCCeecccChHH-HHHHHHhhhhhhccccccc
Confidence 99999999999998764 5677775 99999999999999985432 2233333334444444443
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=9.6e-22 Score=232.43 Aligned_cols=150 Identities=21% Similarity=0.156 Sum_probs=84.2
Q ss_pred CccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCc---cccccccccceeeccCC
Q 001983 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSI---AAFSEVSCHIVKLVLRN 245 (986)
Q Consensus 169 sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L---~~l~~~L~sL~~L~Ls~ 245 (986)
+|+.|++++|.+..+| .+ .+++|+.|++++|.......+..+++|+.|+|++|.++.+ +.....+++|+.|+|++
T Consensus 308 ~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 308 KWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp CCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred cCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence 3444444444444333 22 3334444444443222111344556666666666666655 33344456777777777
Q ss_pred CccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 246 NALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 246 N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
|.++.++ .+..+++|+.|+|++|.+...++...+..+++|+.|++++|.+.... ...+..++.|+.+.|.+|.+.
T Consensus 386 n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~ 461 (606)
T 3vq2_A 386 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF---DGIFLGLTSLNTLKMAGNSFK 461 (606)
T ss_dssp CSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC---TTTTTTCTTCCEEECTTCEEG
T ss_pred CccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc---hhhhcCCCCCCEEECCCCcCC
Confidence 7766654 56667777777777777766654345666777777777777765332 233445566666666666654
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=4.4e-22 Score=220.87 Aligned_cols=270 Identities=16% Similarity=0.147 Sum_probs=214.9
Q ss_pred EEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHH-HhcCCCCCcEEEccCCCCCCCCCcCCC
Q 001983 30 VLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRR-ILKLLTSLKVVSALPPPARDPTPLSLL 108 (986)
Q Consensus 30 ~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~-~L~~L~nLk~L~Ls~N~Ls~~lP~sf~ 108 (986)
.++.+.+.+..+|..+. ++| ..++++++... .++. .+.++++|++|+|++|.+.+..|..|.
T Consensus 35 ~c~~~~~~l~~iP~~~~--~~L--------------~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT--EAV--------------KSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97 (353)
T ss_dssp EEECCSTTCSSCCTTCC--TTC--------------CEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred EeeCCCCCccccccccc--ccC--------------cEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcC
Confidence 57788888888886543 122 33566666543 3444 789999999999999999988888999
Q ss_pred CCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCC-ccccch-hh
Q 001983 109 PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN-RLVIMD-ES 186 (986)
Q Consensus 109 ~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N-~Lt~LP-~s 186 (986)
++++|++|+|++|.+++..+..+..++++..+.+.+|.+..++.. ..+..+++|++|++++| .+..++ ..
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--------~~~~~l~~L~~L~l~~n~~~~~~~~~~ 169 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET--------SLFSHLTKLQILRVGNMDTFTKIQRKD 169 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS--------CSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch--------hhhccCCCCcEEECCCCccccccCHHH
Confidence 999999999999999987777788899888888888887765540 11235779999999999 577664 57
Q ss_pred hcCCCCCCEEECCCCCCCCC--CCcCCcCCCCeecCCCCCcCCcccc-ccccccceeeccCCCccCCcc-----cCCCCC
Q 001983 187 LQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNNALTTLR-----GIENLK 258 (986)
Q Consensus 187 L~~L~~L~~LdLS~N~Ls~L--~~L~~L~~L~~LdLS~N~Ls~L~~l-~~~L~sL~~L~Ls~N~Ls~L~-----~L~~L~ 258 (986)
+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.++.++.. ...+++|+.|+|++|.++.++ ....++
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~ 249 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccc
Confidence 89999999999999999986 3789999999999999999888764 334789999999999998853 334567
Q ss_pred CCCEEEccCCCCCCCch---hhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChhHH
Q 001983 259 SLEGLDISYNIISTFSE---LEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (986)
Q Consensus 259 sL~~LdLS~N~Ls~lp~---l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~ 327 (986)
.++.++|+++.+++... ...+..+++|+.|+|++|.++..+ ...+..++.|+.++|++|++.+...
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~---~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccC---HHHHhcCCCCCEEEeeCCCccCcCC
Confidence 89999999998876311 145789999999999999998554 3446778999999999999998874
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=9.6e-22 Score=235.87 Aligned_cols=269 Identities=16% Similarity=0.152 Sum_probs=211.5
Q ss_pred cccCCeEEEecCCCcccchh-hhhccccchhcccCCCc--------------cccccccccCCCCCCchhhHHHhcCCCC
Q 001983 24 LIEGSIVLKLNPAGLHYVQS-RLEALRELERLLAGAPL--------------DYLRAYVSDLGDHRALEQLRRILKLLTS 88 (986)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp~-~L~~L~~Le~L~l~~~l--------------~~l~l~vLdLs~~~~L~~Lp~~L~~L~n 88 (986)
.+..++.|++..+.+..++. .+..+++|+.|.+..+. ....+..+++++|...+..|..+..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 45667888888888876654 35677777776653211 0013455677777766666777888888
Q ss_pred CcEEEccCCCCCCCCC-cCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCC
Q 001983 89 LKVVSALPPPARDPTP-LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQW 167 (986)
Q Consensus 89 Lk~L~Ls~N~Ls~~lP-~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L 167 (986)
|+.|+|++|.+.+.+| ..|.++++|++|+|++|.+++..+..|..++.+..+.+.+|.+..+... +. .+..+
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-p~------~~~~l 479 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS-PS------PFQPL 479 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS-SC------TTTTC
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC-Cc------ccccC
Confidence 8888888888876544 6788888888888888888887777888888777777777765433211 11 23467
Q ss_pred CCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCC----------CcCCcCCCCeecCCCCCcCCccc-ccccc
Q 001983 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD----------NLRKCVNLKHLDLGFNNLRSIAA-FSEVS 235 (986)
Q Consensus 168 ~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~----------~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L 235 (986)
++|+.|++++|+|+.+|. .+..+++|+.|+|++|+++.++ .+..+++|+.|+|++|+|+.++. .+..+
T Consensus 480 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 559 (680)
T 1ziw_A 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccc
Confidence 899999999999998876 5899999999999999998752 37889999999999999999986 46678
Q ss_pred ccceeeccCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhc-CCCCCcEEEecCCCCCCCcc
Q 001983 236 CHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLA-SLPYLLNLWLEGNPLCCSRW 300 (986)
Q Consensus 236 ~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~-~L~~L~~L~Ls~NpLt~~~~ 300 (986)
++|+.|+|++|+|+.++ .+..+++|+.|+|++|.|+.+++ ..+. .+++|+.|++++||+.|+|.
T Consensus 560 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK-KVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH-HHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred cCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh-hHhcccccccCEEEccCCCcccCCc
Confidence 99999999999999985 57899999999999999999875 4455 78899999999999999985
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=8.4e-21 Score=223.10 Aligned_cols=143 Identities=17% Similarity=0.133 Sum_probs=106.5
Q ss_pred CcCCcCCCCeecCCCCCcC-C-ccccccccccceeeccCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCC
Q 001983 208 NLRKCVNLKHLDLGFNNLR-S-IAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLP 283 (986)
Q Consensus 208 ~L~~L~~L~~LdLS~N~Ls-~-L~~l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~ 283 (986)
.+..++.|+.|+|++|.+. . ++..+..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|+|+.+++ ..+..++
T Consensus 464 ~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~ 542 (635)
T 4g8a_A 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLN 542 (635)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC-GGGTTCT
T ss_pred ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh-hHHhCCC
Confidence 3455667777777777643 2 3345566789999999999999973 68999999999999999999875 6789999
Q ss_pred CCcEEEecCCCCCCCcccchHHhhhc-CCCceeecCCCccChhHHHHHHHHHHhhc----CCCCCCCccCCCCCCC
Q 001983 284 YLLNLWLEGNPLCCSRWYRAQVFSYF-AHPAKLKVDGKEISTRELWERQLIIARRQ----KRPAGFGFYSPAKGNA 354 (986)
Q Consensus 284 ~L~~L~Ls~NpLt~~~~~r~~~~~~l-~~L~lL~LdgN~Is~~e~~~~~~l~~~~~----~~p~~~~~~~P~~~~~ 354 (986)
+|+.|+|++|.|+... ...+..+ +.|+.++|.+||+.|++...+...+.... ..+..+.|..|.....
T Consensus 543 ~L~~L~Ls~N~l~~~~---~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g 615 (635)
T 4g8a_A 543 SLQVLDYSLNHIMTSK---KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 615 (635)
T ss_dssp TCCEEECTTSCCCBCC---SSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTT
T ss_pred CCCEEECCCCcCCCCC---HHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCC
Confidence 9999999999998653 2344444 57999999999999988655433333321 1234566777766554
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=1.9e-21 Score=218.44 Aligned_cols=201 Identities=18% Similarity=0.223 Sum_probs=98.9
Q ss_pred hcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhccccccccc
Q 001983 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (986)
Q Consensus 83 L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~ 162 (986)
+..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..|..|..++++..+.+.+|.+..++...+
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~------- 137 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF------- 137 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-------
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHh-------
Confidence 4556666666666666665555566666666666666666666555556666655555555555544433221
Q ss_pred CCCCCCCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCCCcCCc-------------------CCCCeecCCC
Q 001983 163 DSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKC-------------------VNLKHLDLGF 222 (986)
Q Consensus 163 ~l~~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~~L~~L-------------------~~L~~LdLS~ 222 (986)
..+++|++|++++|.++.++. .+..+++|+.|++++|.++.++ +..+ ++|+.|++++
T Consensus 138 --~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~ 214 (390)
T 3o6n_A 138 --HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 214 (390)
T ss_dssp --TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSCCSEEECCSSCSEEECCS
T ss_pred --cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeecccccccccCCCCcceEEECCC
Confidence 134455556666555554432 3555555555555555555431 1122 2233333333
Q ss_pred CCcCCccccccccccceeeccCCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCC
Q 001983 223 NNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (986)
Q Consensus 223 N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt 296 (986)
|.+..++.. .+++|+.|+|++|.++.++.+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.++
T Consensus 215 n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 215 NSINVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp SCCCEEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES-GGGTTCSSCCEEECCSSCCC
T ss_pred Ceeeecccc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcCh-hHccccccCCEEECCCCcCc
Confidence 333333221 123444444444444444444444444444444444444322 33444444444444444443
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=6.3e-21 Score=222.48 Aligned_cols=288 Identities=17% Similarity=0.179 Sum_probs=181.8
Q ss_pred ccCCeEEEecCCCcccch-hhhhccccchhcccCCC-c---------cccccccccCCCCCCchhhHHHhcCCCCCcEEE
Q 001983 25 IEGSIVLKLNPAGLHYVQ-SRLEALRELERLLAGAP-L---------DYLRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (986)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp-~~L~~L~~Le~L~l~~~-l---------~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~ 93 (986)
...++.|+++.+.+..++ ..+..+++|+.|.+..+ . ..-.+..+++++|...+..|..++++++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 356788888888887763 45677777777665211 1 111235677887776665566688889999999
Q ss_pred ccCCCCCC-CCCcCCCCCCCccEEEeeCCC-CCccchhhHHhhhhhhhhhhccCCCccchh-------------------
Q 001983 94 ALPPPARD-PTPLSLLPFCRLKVLELRGCD-LSTSAAKGLLELRHTLEKIICHNSTNALRH------------------- 152 (986)
Q Consensus 94 Ls~N~Ls~-~lP~sf~~L~nL~~LdLS~N~-Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~------------------- 152 (986)
|++|.+.+ ..|..|.++++|++|+|++|. +....+..+..++++..+.+.+|.+.....
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 98888875 345677777778888887776 333333455555555555555554332110
Q ss_pred -----hccc-------------ccccc-----------------------------------------------------
Q 001983 153 -----VFAS-------------RIVEI----------------------------------------------------- 161 (986)
Q Consensus 153 -----l~~~-------------~l~~L----------------------------------------------------- 161 (986)
.+.. .+..+
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 0000 00000
Q ss_pred -------------cCC--------------------------CCCCCccEEEccCCccccchhhh-cCCCCCCEEECCCC
Q 001983 162 -------------KDS--------------------------PQWNRLSFVSCSCNRLVIMDESL-QLLPAVETLDLSRN 201 (986)
Q Consensus 162 -------------~~l--------------------------~~L~sL~~LdLS~N~Lt~LP~sL-~~L~~L~~LdLS~N 201 (986)
..+ ..+.+|+.|++++|.+..+|..+ ..+++|+.|+|++|
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 000 00134666666666666677655 46888888888888
Q ss_pred CCCCC-----CCcCCcCCCCeecCCCCCcCCccc---cccccccceeeccCCCccCCcc-cCCCCCCCCEEEccCCCCCC
Q 001983 202 KFAKV-----DNLRKCVNLKHLDLGFNNLRSIAA---FSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIIST 272 (986)
Q Consensus 202 ~Ls~L-----~~L~~L~~L~~LdLS~N~Ls~L~~---l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~ 272 (986)
++++. ..+..+++|+.|+|++|+|+.++. .+..+++|+.|+|++|+|+.+| .+..+++|+.|+|++|.|+.
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc
Confidence 88762 246778888888888888888753 3556788889999999888875 57778888888888888887
Q ss_pred CchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 273 FSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 273 lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
++. .+ .++|+.|+|++|.++... ..++.|+.++|.+|.++
T Consensus 425 l~~--~~--~~~L~~L~Ls~N~l~~~~-------~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 425 VKT--CI--PQTLEVLDVSNNNLDSFS-------LFLPRLQELYISRNKLK 464 (549)
T ss_dssp CCT--TS--CTTCSEEECCSSCCSCCC-------CCCTTCCEEECCSSCCS
T ss_pred ccc--hh--cCCceEEECCCCChhhhc-------ccCChhcEEECCCCccC
Confidence 653 11 134555555555554321 23445555666666554
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=4e-21 Score=224.56 Aligned_cols=157 Identities=21% Similarity=0.173 Sum_probs=107.6
Q ss_pred CCCccEEEccCCccccc---hhhhcCCCCCCEEECCCCC-----------------------CCCCC---CcCCcCCCCe
Q 001983 167 WNRLSFVSCSCNRLVIM---DESLQLLPAVETLDLSRNK-----------------------FAKVD---NLRKCVNLKH 217 (986)
Q Consensus 167 L~sL~~LdLS~N~Lt~L---P~sL~~L~~L~~LdLS~N~-----------------------Ls~L~---~L~~L~~L~~ 217 (986)
+++|+.|++++|.++.+ |..+..+++|+.|++++|. +..++ .+..+++|+.
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 44555666666655533 3344445555555555544 43321 3555666666
Q ss_pred ecCCCCCcCCccc-cccccccceeeccCCCccCC--cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCC
Q 001983 218 LDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTT--LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (986)
Q Consensus 218 LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~--L~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~N 293 (986)
|+|++|.+....+ .+..+++|+.|+|++|.++. ++ .+..+++|+.|+|++|.++.+++ ..+..+++|+.|+|++|
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh-hhhhcccCCCEEeCCCC
Confidence 6666666665432 44456788888888888762 43 67888899999999999888743 67888999999999999
Q ss_pred CCCCCcccchHHhhhcCCCceeecCCCccChhHH
Q 001983 294 PLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (986)
Q Consensus 294 pLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~ 327 (986)
.++..+ ...+..++.++.++|.+|++.+...
T Consensus 505 ~l~~~~---~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 505 QLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCSCCC---TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCCCC---HHHhhcccCCcEEEecCCcccCCCc
Confidence 998654 3456778899999999999987653
No 46
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=8.5e-21 Score=206.67 Aligned_cols=202 Identities=24% Similarity=0.195 Sum_probs=151.5
Q ss_pred hcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhccccccccc
Q 001983 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (986)
Q Consensus 83 L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~ 162 (986)
+.++++|+.|++.+|.++. +|..+. ++|+.|+|++|.|++..+..|..++++..+.+.+|.+..++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--------- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---------
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC---------
Confidence 4556777777777777763 343332 5777777777777776666666666655555666654443321
Q ss_pred CCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCcccc-ccccccce
Q 001983 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIV 239 (986)
Q Consensus 163 ~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~l-~~~L~sL~ 239 (986)
..+++|+.|++++|.|+.+|..+..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|+|+.+++. +..+++|+
T Consensus 74 --~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 74 --GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp --SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred --CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 2456888888888888888888888888888888888888875 588888888888888888887763 44578888
Q ss_pred eeccCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001983 240 KLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (986)
Q Consensus 240 ~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~ 300 (986)
.|+|++|+|+.++ .+..+++|+.|+|++|.|+.+| ..+..+++|+.|+|++|||.|.|.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip--~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP--KGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCCCSEEECCSCCBCCSGG
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC--hhhcccccCCeEEeCCCCccCcCc
Confidence 8888888888875 4677888888888888888887 456677788888888888888874
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=3.7e-21 Score=229.05 Aligned_cols=226 Identities=20% Similarity=0.205 Sum_probs=132.1
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccc
Q 001983 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (986)
Q Consensus 82 ~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L 161 (986)
.+..+++|++|+|++|.+.+..|..|..+++|++|+|++|.|++..|..|..++++..+.+.+|.+..++...+
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~------ 143 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF------ 143 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT------
T ss_pred HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHh------
Confidence 34556666666666666665555566666666666666666666555555666665555566665554443221
Q ss_pred cCCCCCCCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCCCcCCc----------------------------
Q 001983 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKC---------------------------- 212 (986)
Q Consensus 162 ~~l~~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~~L~~L---------------------------- 212 (986)
..+++|++|+|++|.|+.++. .|..+++|+.|+|++|.|+.++ +..+
T Consensus 144 ---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 144 ---HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp ---TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred ---ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCccccccCCchhheeecc
Confidence 134455555665555554433 4555555555555555555432 1111
Q ss_pred ------------CCCCeecCCCCCcCCccccccccccceeeccCCCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhh
Q 001983 213 ------------VNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEF 278 (986)
Q Consensus 213 ------------~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~lp~l~~ 278 (986)
++|+.|+|++|.+++++ ....+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+.++ ..
T Consensus 220 ~n~l~~~~~~~~~~L~~L~L~~n~l~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~ 296 (597)
T 3oja_B 220 HNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN--LY 296 (597)
T ss_dssp SSCCCEEECSCCSCCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE--CS
T ss_pred CCcccccccccCCCCCEEECCCCCCCCCh-hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC--cc
Confidence 23455555555555432 233456677777777777665 25667777777777777777765 34
Q ss_pred hcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccCh
Q 001983 279 LASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 279 L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~ 324 (986)
+..+++|+.|+|++|++...+ ..+..++.|+.|+|.+|.+..
T Consensus 297 ~~~l~~L~~L~Ls~N~l~~i~----~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNHLLHVE----RNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp SSCCTTCCEEECCSSCCCCCG----GGHHHHTTCSEEECCSSCCCC
T ss_pred cccCCCCcEEECCCCCCCccC----cccccCCCCCEEECCCCCCCC
Confidence 456777777777777776443 224556777777777777754
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.8e-21 Score=227.08 Aligned_cols=218 Identities=17% Similarity=0.169 Sum_probs=169.5
Q ss_pred CCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCC
Q 001983 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSP 165 (986)
Q Consensus 86 L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~ 165 (986)
+++|+.|+|++|.+.+..|..|..+++|++|+|++|.+++..| +..++++..+.+.+|.+..++.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~------------- 97 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV------------- 97 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-------------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-------------
Confidence 3478888888888877777778888888888888888876555 6677776666677775544331
Q ss_pred CCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-cc-cccccceee
Q 001983 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FS-EVSCHIVKL 241 (986)
Q Consensus 166 ~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~-~~L~sL~~L 241 (986)
.++|+.|++++|.|+.+|.. .+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+++++ .+ ..+++|+.|
T Consensus 98 -~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 98 -GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp -CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred -CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 25889999999999877653 5688999999999998863 67888999999999999987554 22 357889999
Q ss_pred ccCCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCc
Q 001983 242 VLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (986)
Q Consensus 242 ~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~ 321 (986)
+|++|.|+.++.+..+++|+.|+|++|.|+++++ .+..+++|+.|+|++|.|+..+ ..+..++.++.++|++|+
T Consensus 175 ~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~lp----~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIE----KALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp ECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEEC----TTCCCCTTCCEEECTTCC
T ss_pred ecCCCccccccccccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCCcCcccc----hhhccCCCCCEEEcCCCC
Confidence 9999999888877788999999999999998874 4778899999999999988543 235567788999999999
Q ss_pred cChhHH
Q 001983 322 ISTREL 327 (986)
Q Consensus 322 Is~~e~ 327 (986)
+.|...
T Consensus 249 l~c~~~ 254 (487)
T 3oja_A 249 FHCGTL 254 (487)
T ss_dssp BCHHHH
T ss_pred CcCcch
Confidence 986543
No 49
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=5.2e-21 Score=223.59 Aligned_cols=154 Identities=20% Similarity=0.178 Sum_probs=99.2
Q ss_pred CCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCC---------------------cCCcCCCCeecCCCCC
Q 001983 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDN---------------------LRKCVNLKHLDLGFNN 224 (986)
Q Consensus 166 ~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~---------------------L~~L~~L~~LdLS~N~ 224 (986)
.+++|+.|++++|.++.+|..+..+ +|+.|++++|.+..++. ...+++|+.|++++|.
T Consensus 280 ~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358 (570)
T ss_dssp GGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred CcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence 3567888888888888777776666 67777777766665432 1455677777777777
Q ss_pred cCCcc---ccccccccceeeccCCCccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001983 225 LRSIA---AFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (986)
Q Consensus 225 Ls~L~---~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~ 300 (986)
++.+. .....+++|+.|+|++|.++.++ .+..+++|+.|++++|.+...++...+..+++|+.|++++|.+....
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~- 437 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF- 437 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC-
T ss_pred cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc-
Confidence 76553 33444567777777777766653 46667777777777777766543345666777777777777665332
Q ss_pred cchHHhhhcCCCceeecCCCccC
Q 001983 301 YRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 301 ~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
...+..++.|+.+.|.+|.+.
T Consensus 438 --~~~~~~l~~L~~L~l~~n~l~ 458 (570)
T 2z63_A 438 --NGIFNGLSSLEVLKMAGNSFQ 458 (570)
T ss_dssp --TTTTTTCTTCCEEECTTCEEG
T ss_pred --hhhhhcCCcCcEEECcCCcCc
Confidence 233455666677777776654
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=1.2e-21 Score=214.41 Aligned_cols=202 Identities=20% Similarity=0.184 Sum_probs=160.5
Q ss_pred CCCCCcEEEccCCCCCCCCCcCC--CCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhccccccccc
Q 001983 85 LLTSLKVVSALPPPARDPTPLSL--LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (986)
Q Consensus 85 ~L~nLk~L~Ls~N~Ls~~lP~sf--~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~ 162 (986)
++++|++|+|++|.+.+..|..+ ..+++|++|+|++|.+++. |..+..+...
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~------------------------- 146 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQW------------------------- 146 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT-------------------------
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHh-------------------------
Confidence 79999999999999998888876 8999999999999999986 7777766420
Q ss_pred CCCCCCCccEEEccCCccccch-hhhcCCCCCCEEECCCCCCCCC----CC--cCCcCCCCeecCCCCCcCCccc----c
Q 001983 163 DSPQWNRLSFVSCSCNRLVIMD-ESLQLLPAVETLDLSRNKFAKV----DN--LRKCVNLKHLDLGFNNLRSIAA----F 231 (986)
Q Consensus 163 ~l~~L~sL~~LdLS~N~Lt~LP-~sL~~L~~L~~LdLS~N~Ls~L----~~--L~~L~~L~~LdLS~N~Ls~L~~----l 231 (986)
.+++|++|++++|+|+.++ ..+..+++|+.|+|++|++.+. +. +..+++|+.|+|++|.|+.++. .
T Consensus 147 ---~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 147 ---LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp ---CCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred ---hcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 1257888999999888776 5788888999999999887652 23 3788889999999998886553 2
Q ss_pred ccccccceeeccCCCccCCc---ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhh
Q 001983 232 SEVSCHIVKLVLRNNALTTL---RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSY 308 (986)
Q Consensus 232 ~~~L~sL~~L~Ls~N~Ls~L---~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~ 308 (986)
+..+++|+.|+|++|+|+.. +.+..+++|+.|+|++|.|+.+|. .+. ++|+.|+|++|+|+..+. +..
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~--~~L~~L~Ls~N~l~~~p~-----~~~ 294 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK--GLP--AKLSVLDLSYNRLDRNPS-----PDE 294 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS--SCC--SEEEEEECCSSCCCSCCC-----TTT
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh--hcc--CCceEEECCCCCCCCChh-----Hhh
Confidence 33467889999999988884 356667889999999998888763 333 788899999998886642 556
Q ss_pred cCCCceeecCCCccCh
Q 001983 309 FAHPAKLKVDGKEIST 324 (986)
Q Consensus 309 l~~L~lL~LdgN~Is~ 324 (986)
++.++.++|++|+++.
T Consensus 295 l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCEEEEEECTTCTTTC
T ss_pred CCCCCEEeccCCCCCC
Confidence 7888888899988875
No 51
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=217.58 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=60.4
Q ss_pred cCCeEEEecCCCcccch-hhhhccccchhcccCC-Cccc---------cccccccCCCCCCchhhHHHhcCCCCCcEEEc
Q 001983 26 EGSIVLKLNPAGLHYVQ-SRLEALRELERLLAGA-PLDY---------LRAYVSDLGDHRALEQLRRILKLLTSLKVVSA 94 (986)
Q Consensus 26 ~~l~~L~L~~~~L~~Lp-~~L~~L~~Le~L~l~~-~l~~---------l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~L 94 (986)
..++.|+++.+.+..++ ..+..+++|+.|.+.. .... -.+..+|+++|.. ..+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL-VKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC-CEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce-eecCcc--ccCCccEEec
Confidence 56778888888777665 4566666666665421 1110 1223456665543 345554 6777777777
Q ss_pred cCCCCCC-CCCcCCCCCCCccEEEeeCCCCCc
Q 001983 95 LPPPARD-PTPLSLLPFCRLKVLELRGCDLST 125 (986)
Q Consensus 95 s~N~Ls~-~lP~sf~~L~nL~~LdLS~N~Lt~ 125 (986)
++|.+.+ ..|..|..+++|++|+|++|.+++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch
Confidence 7777765 356677777777777777777765
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=4.6e-21 Score=212.11 Aligned_cols=216 Identities=16% Similarity=0.139 Sum_probs=123.5
Q ss_pred hhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCC-ccchhhccc
Q 001983 78 QLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST-NALRHVFAS 156 (986)
Q Consensus 78 ~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L-~~L~~l~~~ 156 (986)
.+|..+.++++|++|+|++|.+. .+|..|..+++|++|+|++|.++ .+|..+..++++..+.+.+|++ ..++..+..
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 45555555555666666555555 45555555556666666666555 3444444444333333333211 111111000
Q ss_pred ccccccCCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCC-CcCCcCCCCeecCCCCCcCC-ccccccc
Q 001983 157 RIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRS-IAAFSEV 234 (986)
Q Consensus 157 ~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS~N~Ls~-L~~l~~~ 234 (986)
......+..+++|++|++++|.|+.+|..+..+++|+.|+|++|.++.++ .+..+++|+.|+|++|.+.+ ++..+..
T Consensus 173 -~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 173 -TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp -EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred -ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcC
Confidence 00000112355777777777777777777777777777777777777764 56777777777777766554 3444555
Q ss_pred cccceeeccCCCccCC-cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCC
Q 001983 235 SCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCC 297 (986)
Q Consensus 235 L~sL~~L~Ls~N~Ls~-L~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~ 297 (986)
+++|+.|+|++|.+.. ++ .+..+++|+.|+|++|.+.+..+ ..+..+++|+.+.+..|.+..
T Consensus 252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP-~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC-GGGGGSCTTCEEECCGGGSCC
T ss_pred CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc-HHHhhccCceEEeCCHHHHHH
Confidence 6777777777765544 33 56677777777777765544222 556777777777777666543
No 53
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=7.4e-21 Score=203.60 Aligned_cols=202 Identities=23% Similarity=0.324 Sum_probs=122.5
Q ss_pred CCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCC
Q 001983 88 SLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQW 167 (986)
Q Consensus 88 nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L 167 (986)
+|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..++++..+.+.+|.+..+... .+..+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~l 99 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG---------AFSGL 99 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT---------TTTTC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh---------hhcCC
Confidence 455555555555544444555555555555555555544443444333333333333332222111 01234
Q ss_pred CCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCC--CC-CcCCcCCCCeecCCCCCcCCccc-cccccccce---
Q 001983 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAK--VD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIV--- 239 (986)
Q Consensus 168 ~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~--L~-~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~--- 239 (986)
++|++|++++|.+..++. .+..+++|+.|++++|.++. ++ .+..+++|+.|+|++|+++.++. .+..+++|+
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 577777887777776655 57777778888888887776 33 57777778888888887777653 333344444
Q ss_pred -eeccCCCccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 001983 240 -KLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (986)
Q Consensus 240 -~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~ 299 (986)
.|++++|.|+.++ ......+|+.|+|++|.|+.++. ..+..+++|+.|+|++|+|.|.|
T Consensus 180 l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 180 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp EEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSCBCCCT
T ss_pred eeeecCCCcccccCccccCCCcccEEECCCCceeecCH-hHhcccccccEEEccCCcccccC
Confidence 6777788777763 34444577888888888777764 45677777888888888887776
No 54
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=230.97 Aligned_cols=291 Identities=18% Similarity=0.132 Sum_probs=202.3
Q ss_pred cccCCeEEEecCCCcccc-hhhhhccccchhcccCCC-----------ccccccccccCCCCCCchhhHHHhcCCCCCcE
Q 001983 24 LIEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGAP-----------LDYLRAYVSDLGDHRALEQLRRILKLLTSLKV 91 (986)
Q Consensus 24 lL~~l~~L~L~~~~L~~L-p~~L~~L~~Le~L~l~~~-----------l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~ 91 (986)
+...++.|+++.+.+..+ |..+..+++|+.|.+..+ -..-.+..+++++|......|..|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 567788999999988876 566788888887776433 01112356788888766666888899999999
Q ss_pred EEccCCCCCCCCCcC--CCCCCCccEEEeeCCCCCccch-hhHHhhhhhhhhhhccCCCccchhhccccc--cccc----
Q 001983 92 VSALPPPARDPTPLS--LLPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKIICHNSTNALRHVFASRI--VEIK---- 162 (986)
Q Consensus 92 L~Ls~N~Ls~~lP~s--f~~L~nL~~LdLS~N~Lt~~lp-~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l--~~L~---- 162 (986)
|+|++|.+.+..|.. |.++++|++|+|++|.+++..+ ..|.+++++..+.+.+|.+..+.......+ ..+.
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999988766654 8889999999999999887654 578888888888888887654322111111 0000
Q ss_pred -----------CCCCCC------CccEEEccCCccc-cchhhh------------------------------------c
Q 001983 163 -----------DSPQWN------RLSFVSCSCNRLV-IMDESL------------------------------------Q 188 (986)
Q Consensus 163 -----------~l~~L~------sL~~LdLS~N~Lt-~LP~sL------------------------------------~ 188 (986)
.+..+. .|+.|++++|.++ .+|..+ .
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 011111 3788888888655 222111 1
Q ss_pred C--CCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCc--ccCCCCCCCC
Q 001983 189 L--LPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL--RGIENLKSLE 261 (986)
Q Consensus 189 ~--L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~ 261 (986)
. .++|+.|+|++|.+..++ .+..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|.|+.+ ..+..+++|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 1 256888888888877653 57778888888888888877654 455577888888888888776 3677888888
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 262 ~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
.|+|++|.|..++. ..+..+++|+.|+|++|.++..+ .++.++.+.+.+|.+.
T Consensus 342 ~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~--------~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 342 YIDLQKNHIAIIQD-QTFKFLEKLQTLDLRDNALTTIH--------FIPSIPDIFLSGNKLV 394 (844)
T ss_dssp EEECCSCCCCCCCS-SCSCSCCCCCEEEEETCCSCCCS--------SCCSCSEEEEESCCCC
T ss_pred EEECCCCCCCccCh-hhhcCCCCCCEEECCCCCCCccc--------CCCCcchhccCCCCcc
Confidence 88888888877764 45677888888888888877443 1556777777777765
No 55
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=3.5e-20 Score=198.49 Aligned_cols=196 Identities=21% Similarity=0.262 Sum_probs=153.0
Q ss_pred ccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCC
Q 001983 68 SDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST 147 (986)
Q Consensus 68 LdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L 147 (986)
++++++. +..+|..+ .++|+.|+|++|.+....+..|..+++|++|+|++|.++...+..|.
T Consensus 21 l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~--------------- 82 (270)
T 2o6q_A 21 VDCSSKK-LTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK--------------- 82 (270)
T ss_dssp EECTTSC-CSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS---------------
T ss_pred EEccCCC-CCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc---------------
Confidence 4444433 44455433 25788888888888877777888888888888888888753332221
Q ss_pred ccchhhcccccccccCCCCCCCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCC
Q 001983 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNN 224 (986)
Q Consensus 148 ~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~ 224 (986)
.+++|++|++++|.++.+|. .+..+++|+.|+|++|.++.++ .|..+++|+.|+|++|.
T Consensus 83 ------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 83 ------------------ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp ------------------SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------------------CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc
Confidence 34578899999999987775 5688899999999999998875 47888999999999999
Q ss_pred cCCcccc-ccccccceeeccCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001983 225 LRSIAAF-SEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (986)
Q Consensus 225 Ls~L~~l-~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~ 300 (986)
|+.++.. +..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++||+.|+|.
T Consensus 145 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 145 LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH-HHhccccCCCEEEecCCCeeCCCc
Confidence 9888763 456788999999999998875 47888999999999999998875 567788899999999999988874
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.6e-20 Score=207.82 Aligned_cols=224 Identities=15% Similarity=0.072 Sum_probs=190.1
Q ss_pred CCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCC
Q 001983 85 LLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (986)
Q Consensus 85 ~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l 164 (986)
..++|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..++++..+.+.+|.+..++..+.
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~--------- 147 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIA--------- 147 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGG---------
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHh---------
Confidence 4689999999999998 67888999999999999999999 688899999998888999998876654332
Q ss_pred CCCCCccEEEccCCcc-ccchhhhcC---------CCCCCEEECCCCCCCCCC-CcCCcCCCCeecCCCCCcCCcccccc
Q 001983 165 PQWNRLSFVSCSCNRL-VIMDESLQL---------LPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSE 233 (986)
Q Consensus 165 ~~L~sL~~LdLS~N~L-t~LP~sL~~---------L~~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS~N~Ls~L~~l~~ 233 (986)
.+++|++|++++|++ ..+|..+.. +++|+.|+|++|.|+.+| .+..+++|+.|+|++|.++++++.+.
T Consensus 148 -~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~ 226 (328)
T 4fcg_A 148 -SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226 (328)
T ss_dssp -GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGG
T ss_pred -cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhc
Confidence 467999999999654 478776654 999999999999999886 78999999999999999999988777
Q ss_pred ccccceeeccCCCccCCc-c-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCC
Q 001983 234 VSCHIVKLVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH 311 (986)
Q Consensus 234 ~L~sL~~L~Ls~N~Ls~L-~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~ 311 (986)
.+++|+.|+|++|.+... + .+..+++|+.|+|++|.+....+ ..+..+++|+.|+|++|++...- +..+..++.
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~i---P~~l~~L~~ 302 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRL---PSLIAQLPA 302 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCCC---CGGGGGSCT
T ss_pred cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhhc---cHHHhhccC
Confidence 889999999999987764 4 78999999999999987765433 56889999999999999987542 355778899
Q ss_pred CceeecCCCccCh
Q 001983 312 PAKLKVDGKEIST 324 (986)
Q Consensus 312 L~lL~LdgN~Is~ 324 (986)
++.+.+..+.+..
T Consensus 303 L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 303 NCIILVPPHLQAQ 315 (328)
T ss_dssp TCEEECCGGGSCC
T ss_pred ceEEeCCHHHHHH
Confidence 9999998877654
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.4e-21 Score=216.74 Aligned_cols=253 Identities=19% Similarity=0.192 Sum_probs=200.0
Q ss_pred cccCCeEEEecCCCcccchh-hhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCC
Q 001983 24 LIEGSIVLKLNPAGLHYVQS-RLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDP 102 (986)
Q Consensus 24 lL~~l~~L~L~~~~L~~Lp~-~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~ 102 (986)
+...++.|+++.+.+..+|. .+..+++|+.| ++++|...+..|..+.++++|++|+|++|.++..
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L--------------~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQAL--------------VLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEE--------------ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEE--------------ECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 34578999999999998876 56666666555 4555544443456788999999999999999977
Q ss_pred CCcCCCCCCCccEEEeeCCCCCccch-hhHHhhhhhhhhhhccCC-CccchhhcccccccccCCCCCCCccEEEccCCcc
Q 001983 103 TPLSLLPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKIICHNS-TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRL 180 (986)
Q Consensus 103 lP~sf~~L~nL~~LdLS~N~Lt~~lp-~~L~~L~~LL~LLL~~N~-L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~L 180 (986)
.+..|..+++|++|+|++|.++...+ ..+..++++..+.+.+|+ +..+... .+..+++|+.|++++|.+
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---------~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK---------DFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---------TTTTCCEEEEEEEEETTC
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH---------HccCCCCCCEEECCCCCc
Confidence 66668999999999999999987544 467888887777777773 4444321 123577999999999999
Q ss_pred ccc-hhhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCcccc----ccccccceeeccCCCccCC---
Q 001983 181 VIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF----SEVSCHIVKLVLRNNALTT--- 250 (986)
Q Consensus 181 t~L-P~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~l----~~~L~sL~~L~Ls~N~Ls~--- 250 (986)
+.+ |..+..+++|+.|++++|.+..++ .+..+++|+.|+|++|.++.++.. ......++.++|+++.++.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 965 778999999999999999998876 355689999999999999986531 2234567788888887766
Q ss_pred --cc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001983 251 --LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (986)
Q Consensus 251 --L~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~ 300 (986)
++ .+..+++|+.|+|++|.|+.+|. ..+..+++|+.|+|++|++.|.|.
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhHHHHhcccCCCEEECCCCCCCccCH-HHHhcCCCCCEEEeeCCCccCcCC
Confidence 33 67889999999999999999874 446899999999999999999873
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=6.9e-22 Score=216.83 Aligned_cols=228 Identities=16% Similarity=0.152 Sum_probs=184.3
Q ss_pred ccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccC
Q 001983 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (986)
Q Consensus 66 ~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N 145 (986)
..+++++|......|..+..+++|++|+|++|.+.+..+ |..+++|++|+|++|.+++..+ .+.+..+.+.+|
T Consensus 37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~n 109 (317)
T 3o53_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANN 109 (317)
T ss_dssp SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSS
T ss_pred CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC-----CCCcCEEECCCC
Confidence 446777776666667789999999999999999986654 8999999999999999987432 255566667777
Q ss_pred CCccchhhcccccccccCCCCCCCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCC--Cc-CCcCCCCeecCC
Q 001983 146 STNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NL-RKCVNLKHLDLG 221 (986)
Q Consensus 146 ~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~--~L-~~L~~L~~LdLS 221 (986)
.+..+... .+++|+.|++++|.++.++. .+..+++|+.|+|++|.++.++ .+ ..+++|+.|+|+
T Consensus 110 ~l~~~~~~------------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 110 NISRVSCS------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp CCSEEEEC------------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred ccCCcCcc------------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 76554321 25689999999999997765 7888999999999999999863 44 478999999999
Q ss_pred CCCcCCccccccccccceeeccCCCccCCc-ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001983 222 FNNLRSIAAFSEVSCHIVKLVLRNNALTTL-RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (986)
Q Consensus 222 ~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L-~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~ 300 (986)
+|.|+.++.... +++|+.|+|++|+|+.+ +.+..+++|+.|+|++|.|+.+| ..+..+++|+.|+|++|++.|.+
T Consensus 178 ~N~l~~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~l~~L~~L~l~~N~~~~~~- 253 (317)
T 3o53_A 178 YNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFHCGT- 253 (317)
T ss_dssp TSCCCEEECCCC-CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTTCCCBHHH-
T ss_pred CCcCcccccccc-cccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh--hHhhcCCCCCEEEccCCCccCcC-
Confidence 999999876543 68999999999999998 47889999999999999999987 46889999999999999998653
Q ss_pred cchHHhhhcCCCceeec
Q 001983 301 YRAQVFSYFAHPAKLKV 317 (986)
Q Consensus 301 ~r~~~~~~l~~L~lL~L 317 (986)
....+..++.++.+.+
T Consensus 254 -~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 254 -LRDFFSKNQRVQTVAK 269 (317)
T ss_dssp -HHHHHHTCHHHHHHHH
T ss_pred -HHHHHhccccceEEEC
Confidence 2334444444444433
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.6e-21 Score=227.46 Aligned_cols=236 Identities=17% Similarity=0.179 Sum_probs=189.1
Q ss_pred EecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCC
Q 001983 32 KLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFC 111 (986)
Q Consensus 32 ~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~ 111 (986)
.+.......+|..+..+.. ..-.+..+++++|......|..|..+++|++|+|++|.+++..| |..++
T Consensus 13 ~~~~~~~~~l~~~l~~l~~----------~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~ 80 (487)
T 3oja_A 13 KIEKVTDSSLKQALASLRQ----------SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS 80 (487)
T ss_dssp EEESCCTTTHHHHHHTTST----------TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT
T ss_pred ecccCchhhhHHHHHHhcc----------cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC
Confidence 4444455556665554431 11134557788877666567789999999999999999987665 99999
Q ss_pred CccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccc-hhhhcCC
Q 001983 112 RLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM-DESLQLL 190 (986)
Q Consensus 112 nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~L-P~sL~~L 190 (986)
+|++|+|++|.|++..+. +.+..+.+.+|.+..++.. .+++|+.|+|++|.|+.+ |..+..+
T Consensus 81 ~L~~L~Ls~N~l~~l~~~-----~~L~~L~L~~N~l~~~~~~------------~l~~L~~L~L~~N~l~~~~~~~~~~l 143 (487)
T 3oja_A 81 TLRTLDLNNNYVQELLVG-----PSIETLHAANNNISRVSCS------------RGQGKKNIYLANNKITMLRDLDEGCR 143 (487)
T ss_dssp TCCEEECCSSEEEEEEEC-----TTCCEEECCSSCCCCEEEC------------CCSSCEEEECCSSCCCSGGGBCGGGG
T ss_pred CCCEEEecCCcCCCCCCC-----CCcCEEECcCCcCCCCCcc------------ccCCCCEEECCCCCCCCCCchhhcCC
Confidence 999999999999875432 5556667788876655431 346899999999999966 4478899
Q ss_pred CCCCEEECCCCCCCCCC--CcC-CcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCc-ccCCCCCCCCEEEcc
Q 001983 191 PAVETLDLSRNKFAKVD--NLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL-RGIENLKSLEGLDIS 266 (986)
Q Consensus 191 ~~L~~LdLS~N~Ls~L~--~L~-~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L-~~L~~L~sL~~LdLS 266 (986)
++|+.|+|++|.|+.++ .+. .+++|+.|+|++|.|+++++.. .+++|+.|+|++|.|+.+ +.+..+++|+.|+|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls 222 (487)
T 3oja_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222 (487)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT
T ss_pred CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc-cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEec
Confidence 99999999999999852 554 7899999999999999987655 379999999999999997 478899999999999
Q ss_pred CCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 001983 267 YNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (986)
Q Consensus 267 ~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~ 299 (986)
+|.|+.+| ..+..+++|+.|++++|++.|.+
T Consensus 223 ~N~l~~lp--~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 223 NNKLVLIE--KALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TSCCCEEC--TTCCCCTTCCEEECTTCCBCHHH
T ss_pred CCcCcccc--hhhccCCCCCEEEcCCCCCcCcc
Confidence 99999987 45889999999999999998653
No 60
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=3e-20 Score=203.65 Aligned_cols=194 Identities=18% Similarity=0.216 Sum_probs=138.3
Q ss_pred CCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCC
Q 001983 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSP 165 (986)
Q Consensus 86 L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~ 165 (986)
+++|+.|++++|.+... | .+..+++|++|+|++|.+++..+ +..++++..+.+.+|.+..++. +.
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-----------~~ 104 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA-----------IA 104 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGG-----------GT
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchh-----------hc
Confidence 45555555555555432 2 35555555555555555554322 4444444444444444333221 12
Q ss_pred CCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCC
Q 001983 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRN 245 (986)
Q Consensus 166 ~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~ 245 (986)
.+++|+.|++++|.++.+|. +..+++|+.|++++|.++.++.+..+++|+.|+|++|.++.+++ ...+++|+.|+|++
T Consensus 105 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD 182 (308)
T ss_dssp TCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred CCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC
Confidence 45688888998888888764 78888899999999988888778888888999999888888777 55678888999999
Q ss_pred CccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 001983 246 NALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (986)
Q Consensus 246 N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~ 299 (986)
|.|+.++.+..+++|+.|+|++|.|+.+++ +..+++|+.|+|++|++++.+
T Consensus 183 n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 183 NKISDISPLASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp SCCCCCGGGGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEEEEEEECCC
T ss_pred CccCcChhhcCCCCCCEEEccCCccCcccc---ccCCCCCCEEEccCCeeecCC
Confidence 988888778888889999999998888763 678888899999998887754
No 61
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=9.7e-20 Score=214.57 Aligned_cols=128 Identities=18% Similarity=0.189 Sum_probs=89.0
Q ss_pred cCCCCCCEEECCCCCCCCC--CCcCCcCCCCeecCCCCCcCCccc---cccccccceeeccCCCccCC-cc--cCCCCCC
Q 001983 188 QLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAA---FSEVSCHIVKLVLRNNALTT-LR--GIENLKS 259 (986)
Q Consensus 188 ~~L~~L~~LdLS~N~Ls~L--~~L~~L~~L~~LdLS~N~Ls~L~~---l~~~L~sL~~L~Ls~N~Ls~-L~--~L~~L~s 259 (986)
..+++|++|++++|.++.. ..+..+++|+.|+|++|+++.++. .+..+++|+.|+|++|.++. ++ .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 5667777788888777762 367777788888888887776553 34456778888888887776 54 4677777
Q ss_pred CCEEEccCCCCCCCchhhhhcCC-CCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 260 LEGLDISYNIISTFSELEFLASL-PYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 260 L~~LdLS~N~Ls~lp~l~~L~~L-~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
|+.|+|++|.|++.. +..+ ++|+.|+|++|.++..+ ...+ .++.|+.++|.+|.++
T Consensus 430 L~~L~l~~n~l~~~~----~~~l~~~L~~L~L~~N~l~~ip---~~~~-~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 430 ILVLNLSSNMLTGSV----FRCLPPKVKVLDLHNNRIMSIP---KDVT-HLQALQELNVASNQLK 486 (562)
T ss_dssp CCEEECCSSCCCGGG----GSSCCTTCSEEECCSSCCCCCC---TTTT-SSCCCSEEECCSSCCC
T ss_pred CCEEECCCCCCCcch----hhhhcCcCCEEECCCCcCcccC---hhhc-CCCCCCEEECCCCCCC
Confidence 888888888776532 2233 57888888888877443 2223 6677888888888776
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=2.6e-19 Score=215.45 Aligned_cols=256 Identities=20% Similarity=0.201 Sum_probs=167.5
Q ss_pred CCeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcC
Q 001983 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLS 106 (986)
Q Consensus 27 ~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~s 106 (986)
+.+.|+++.+.+..+|..+. ++|+.|.+ ++|. +..+|. .+++|++|+|++|.++. +|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L--------------~~N~-l~~lp~---~l~~L~~L~Ls~N~l~~-lp~- 98 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVI--------------PDNN-LTSLPA---LPPELRTLEVSGNQLTS-LPV- 98 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEE--------------CSCC-CSCCCC---CCTTCCEEEECSCCCSC-CCC-
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEe--------------cCCC-CCCCCC---cCCCCCEEEcCCCcCCc-CCC-
Confidence 46899999999999887654 34444433 3222 223333 34555555555555542 222
Q ss_pred CCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcc---------cccccccCCCCCCCccEEEccC
Q 001983 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFA---------SRIVEIKDSPQWNRLSFVSCSC 177 (986)
Q Consensus 107 f~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~---------~~l~~L~~l~~L~sL~~LdLS~ 177 (986)
.+++|++|+|++|.|++. |. .++++..+.+.+|.+..++..+. +.+..++ ..+++|+.|++++
T Consensus 99 --~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~--~~~~~L~~L~L~~ 170 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP--ALPSELCKLWAYN 170 (622)
T ss_dssp --CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCS
T ss_pred --CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcC--CccCCCCEEECCC
Confidence 445555555555555542 22 22233333344444433332110 0000111 1234677777777
Q ss_pred CccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcccCCCC
Q 001983 178 NRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENL 257 (986)
Q Consensus 178 N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L 257 (986)
|.|+.+| ..+++|+.|+|++|.|+.++.. +++|+.|++++|.|+.++.. +++|+.|+|++|.|+.++ ..+
T Consensus 171 N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp--~~l 240 (622)
T 3g06_A 171 NQLTSLP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP--VLP 240 (622)
T ss_dssp SCCSCCC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--CCC
T ss_pred CCCCCCc---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--CCC
Confidence 7777766 4467888888888888877643 47888888888888877753 378999999999999987 567
Q ss_pred CCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChhHHHHHH
Q 001983 258 KSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQ 331 (986)
Q Consensus 258 ~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~~~~~ 331 (986)
++|+.|+|++|.|+.+|. .+++|+.|+|++|.|+..+ ..+..++.|+.++|.+|+++........
T Consensus 241 ~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp----~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 241 SELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLP----ESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSCC----GGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcCC----HHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 899999999999999874 6789999999999998554 3467889999999999999976654433
No 63
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=223.93 Aligned_cols=270 Identities=17% Similarity=0.209 Sum_probs=194.6
Q ss_pred ccccCCeEEEecCC-Ccccc-hhhhhccccchhcccCC-Cccc---------cccccccCCCCCCchhhHHH--hcCCCC
Q 001983 23 PLIEGSIVLKLNPA-GLHYV-QSRLEALRELERLLAGA-PLDY---------LRAYVSDLGDHRALEQLRRI--LKLLTS 88 (986)
Q Consensus 23 ~lL~~l~~L~L~~~-~L~~L-p~~L~~L~~Le~L~l~~-~l~~---------l~l~vLdLs~~~~L~~Lp~~--L~~L~n 88 (986)
.-+..++.|+++.+ .+..+ |..+..+++|+.|.+.. .... -.+..+++++|...+.+|.. +.++++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 34556778888777 44455 56677777777766521 1111 12346778887766655554 889999
Q ss_pred CcEEEccCCCCCCCCC-cCCCCCCCccEEEeeCCCCCccchhhHHhh--hhhhhhhhccCCCccc---------------
Q 001983 89 LKVVSALPPPARDPTP-LSLLPFCRLKVLELRGCDLSTSAAKGLLEL--RHTLEKIICHNSTNAL--------------- 150 (986)
Q Consensus 89 Lk~L~Ls~N~Ls~~lP-~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L--~~LL~LLL~~N~L~~L--------------- 150 (986)
|++|+|++|.+.+..+ ..|.++++|++|+|++|.+++..+..+..+ +++..+.+..|.+...
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence 9999999999987655 579999999999999999998888888776 4444444555443221
Q ss_pred --hhh--------------ccccc-----c-------------------cc--cCCC--CCCCccEEEccCCccccc-hh
Q 001983 151 --RHV--------------FASRI-----V-------------------EI--KDSP--QWNRLSFVSCSCNRLVIM-DE 185 (986)
Q Consensus 151 --~~l--------------~~~~l-----~-------------------~L--~~l~--~L~sL~~LdLS~N~Lt~L-P~ 185 (986)
..+ +...+ . .+ ..+. ..++|+.|++++|.+..+ |.
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~ 284 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh
Confidence 000 00000 0 00 0011 136799999999999855 45
Q ss_pred hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCcc--cCCCCCCC
Q 001983 186 SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (986)
Q Consensus 186 sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL 260 (986)
.+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|.++.+.+ .+..+++|+.|+|++|.|+.++ .+..+++|
T Consensus 285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 364 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364 (844)
T ss_dssp CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC
T ss_pred hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC
Confidence 7888999999999999998863 68889999999999999988744 5666889999999999998874 58889999
Q ss_pred CEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001983 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (986)
Q Consensus 261 ~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~ 298 (986)
+.|+|++|.|+.++. +++|+.|++++|++...
T Consensus 365 ~~L~Ls~N~l~~i~~------~~~L~~L~l~~N~l~~l 396 (844)
T 3j0a_A 365 QTLDLRDNALTTIHF------IPSIPDIFLSGNKLVTL 396 (844)
T ss_dssp CEEEEETCCSCCCSS------CCSCSEEEEESCCCCCC
T ss_pred CEEECCCCCCCcccC------CCCcchhccCCCCcccc
Confidence 999999999987652 66777777777777644
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=3.3e-19 Score=206.51 Aligned_cols=252 Identities=17% Similarity=0.181 Sum_probs=179.3
Q ss_pred ccCCeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCC
Q 001983 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (986)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP 104 (986)
+..++.|+++.+.+..+| .+..+++|+.|.+ ++|. +..+| ++.+++|++|+|++|.+.+. |
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L--------------s~n~-l~~~~--~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLIC--------------TSNN-ITTLD--LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEEC--------------CSSC-CSCCC--CTTCTTCSEEECCSSCCSCC-C
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEc--------------cCCc-CCeEc--cccCCCCCEEECcCCCCcee-e
Confidence 566789999999998887 4777766665543 3333 23343 77888999999999998864 3
Q ss_pred cCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCC-ccccc
Q 001983 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN-RLVIM 183 (986)
Q Consensus 105 ~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N-~Lt~L 183 (986)
+..+++|++|+|++|.+++. | +..++++..+.+.+|.+..++ +..+++|++|++++| .+..+
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~------------l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEID------------VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCC------------CTTCTTCCEEECTTCSCCCCC
T ss_pred --cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceec------------cccCCcCCEEECCCCCccccc
Confidence 88889999999999998873 3 677777777777777665542 234668888888888 44455
Q ss_pred hhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcccCCCCCCCCEE
Q 001983 184 DESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGL 263 (986)
Q Consensus 184 P~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~L 263 (986)
.+..+++|+.|++++|+++.++ +..+++|+.|++++|.++.++ ...+++|+.|+|++|+|+.+| +..+++|+.|
T Consensus 165 --~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L 238 (457)
T 3bz5_A 165 --DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYF 238 (457)
T ss_dssp --CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEE
T ss_pred --ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC-ccccCCCCEE
Confidence 4677888888888888888876 777888888888888888773 445678888888888888877 7788888888
Q ss_pred EccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc-----cchHHhhhcCCCceeecCCCcc
Q 001983 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW-----YRAQVFSYFAHPAKLKVDGKEI 322 (986)
Q Consensus 264 dLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~-----~r~~~~~~l~~L~lL~LdgN~I 322 (986)
+|++|.|+.++ +..+++|+.|++++|.+....- .....+..++.++.++|.+|+.
T Consensus 239 ~l~~N~l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 239 DCSVNPLTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp ECCSSCCSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTT
T ss_pred EeeCCcCCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcc
Confidence 88888888875 3455556555555555443210 0000123456777777777764
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=1.4e-21 Score=213.92 Aligned_cols=217 Identities=18% Similarity=0.093 Sum_probs=163.5
Q ss_pred ccCCCCCCchhhHHHhcCCCCCcEEEccCCCCC-CCCCcCCC-------CCCCccEEEeeCCCCCccchhhHHhhhhhhh
Q 001983 68 SDLGDHRALEQLRRILKLLTSLKVVSALPPPAR-DPTPLSLL-------PFCRLKVLELRGCDLSTSAAKGLLELRHTLE 139 (986)
Q Consensus 68 LdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls-~~lP~sf~-------~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~ 139 (986)
+++.++.. .+|..+... |+.|+|++|.+. ..+|..+. ++++|++|+|++|.+++..|..+.
T Consensus 48 l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------- 116 (312)
T 1wwl_A 48 LLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL------- 116 (312)
T ss_dssp HHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS-------
T ss_pred Eeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH-------
Confidence 33444443 345544333 777777777773 34454444 577888888888877765554321
Q ss_pred hhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccchhhhcCC-----CCCCEEECCCCCCCCCC--CcCCc
Q 001983 140 KIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLL-----PAVETLDLSRNKFAKVD--NLRKC 212 (986)
Q Consensus 140 LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~sL~~L-----~~L~~LdLS~N~Ls~L~--~L~~L 212 (986)
...+++|++|++++|+++.+|..+..+ ++|++|+|++|+|..++ .+..+
T Consensus 117 ------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 117 ------------------------EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp ------------------------SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred ------------------------HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 023568999999999999888777766 99999999999999875 79999
Q ss_pred CCCCeecCCCCCcCCc---cccc--cccccceeeccCCCccCCcc-----cCCCCCCCCEEEccCCCCCCCchhhhhcCC
Q 001983 213 VNLKHLDLGFNNLRSI---AAFS--EVSCHIVKLVLRNNALTTLR-----GIENLKSLEGLDISYNIISTFSELEFLASL 282 (986)
Q Consensus 213 ~~L~~LdLS~N~Ls~L---~~l~--~~L~sL~~L~Ls~N~Ls~L~-----~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L 282 (986)
++|+.|+|++|++.+. +... ..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|.|++.++...+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 9999999999998753 2222 56799999999999999653 345789999999999999997644566778
Q ss_pred CCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChh
Q 001983 283 PYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (986)
Q Consensus 283 ~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~ 325 (986)
++|+.|+|++|.|+..+. ..+ +.++.++|.+|.++..
T Consensus 253 ~~L~~L~Ls~N~l~~ip~---~~~---~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPK---GLP---AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp TTCCEEECTTSCCSSCCS---SCC---SEEEEEECCSSCCCSC
T ss_pred CCCCEEECCCCccChhhh---hcc---CCceEEECCCCCCCCC
Confidence 999999999999985542 211 6799999999999854
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.8e-19 Score=190.43 Aligned_cols=200 Identities=22% Similarity=0.260 Sum_probs=171.0
Q ss_pred CCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCC
Q 001983 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (986)
Q Consensus 87 ~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~ 166 (986)
.+++.++++++.++. +|..+. ++|+.|+|++|.++...+..|. .
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~---------------------------------~ 59 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFH---------------------------------R 59 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSS---------------------------------S
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhc---------------------------------C
Confidence 457899999999984 565554 6899999999999875443332 3
Q ss_pred CCCccEEEccCCccccchhh-hcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-cccccccceeec
Q 001983 167 WNRLSFVSCSCNRLVIMDES-LQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLV 242 (986)
Q Consensus 167 L~sL~~LdLS~N~Lt~LP~s-L~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~ 242 (986)
+++|++|++++|.|+.+|.. |..+++|++|+|++|.++.++ .+..+++|+.|+|++|.++.+++ .+..+++|+.|+
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 45899999999999988874 688999999999999999986 67899999999999999999876 456689999999
Q ss_pred cCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCC
Q 001983 243 LRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGK 320 (986)
Q Consensus 243 Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN 320 (986)
|++|.|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|+++..+ ...+..++.++.+.|.+|
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVP---EGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSS
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCC---HHHhccccCCCEEEecCC
Confidence 9999999985 48899999999999999999875 56889999999999999998654 345667889999999999
Q ss_pred ccChhH
Q 001983 321 EISTRE 326 (986)
Q Consensus 321 ~Is~~e 326 (986)
++.+.+
T Consensus 216 ~~~c~c 221 (270)
T 2o6q_A 216 PWDCTC 221 (270)
T ss_dssp CBCCSS
T ss_pred CeeCCC
Confidence 998765
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=1.3e-19 Score=209.75 Aligned_cols=259 Identities=17% Similarity=0.112 Sum_probs=157.8
Q ss_pred ccCCeEEEecCCCcccchhhhhccccchhcccCC-------Ccccc----------------ccccccCCCCCCchhhHH
Q 001983 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-------PLDYL----------------RAYVSDLGDHRALEQLRR 81 (986)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~-------~l~~l----------------~l~vLdLs~~~~L~~Lp~ 81 (986)
...++.|.++.+.+..+|..+.+|++|+.|.... |.... .+..++++++. +..+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCC
Confidence 3567789999999999999999999888875411 10000 02345555554 333443
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccc
Q 001983 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (986)
Q Consensus 82 ~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L 161 (986)
. .++|++|+|++|.+.+ +|.. +++|++|++++|.+++. |... +++..+.+.+|.+..++
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~~---~~L~~L~L~~n~l~~lp---------- 147 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDLP---PLLEYLGVSNNQLEKLP---------- 147 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSCC---TTCCEEECCSSCCSSCC----------
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCCC---CCCCEEECcCCCCCCCc----------
Confidence 1 3567777777777765 4432 36777777777777652 2111 23444455555544433
Q ss_pred cCCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceee
Q 001983 162 KDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKL 241 (986)
Q Consensus 162 ~~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L 241 (986)
.+..+++|++|++++|+++.+|.. +++|++|++++|.++.++.+..+++|+.|++++|.+++++... ++|+.|
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L 220 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESI 220 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEE
T ss_pred -ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEE
Confidence 234567888888888888877754 3578888888888888888888888888888888888776543 578888
Q ss_pred ccCCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCc
Q 001983 242 VLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (986)
Q Consensus 242 ~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~ 321 (986)
++++|.++.++.+..+++|+.|++++|.++.+|. .+++|+.|++++|.+...+. .++.++.+++.+|.
T Consensus 221 ~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~l~~-------~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 221 VAGNNILEELPELQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLPE-------LPQSLTFLDVSENI 288 (454)
T ss_dssp ECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSC
T ss_pred ECcCCcCCcccccCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCcccccCc-------ccCcCCEEECcCCc
Confidence 8888888888778888888888888888888763 24788888888888876442 23668888888888
Q ss_pred cCh
Q 001983 322 IST 324 (986)
Q Consensus 322 Is~ 324 (986)
+..
T Consensus 289 l~~ 291 (454)
T 1jl5_A 289 FSG 291 (454)
T ss_dssp CSE
T ss_pred cCc
Confidence 763
No 68
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=5.6e-19 Score=207.61 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=64.1
Q ss_pred ccceeeccCCCccCC-c--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCC
Q 001983 236 CHIVKLVLRNNALTT-L--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHP 312 (986)
Q Consensus 236 ~sL~~L~Ls~N~Ls~-L--~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L 312 (986)
+.|+.|+|++|.+.. + ..+..+++|+.|+|++|+|+.+++ ..+..+++|+.|+|++|.|+..+ ...+..++.|
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~-~~f~~l~~L~~L~Ls~N~l~~l~---~~~~~~l~~L 544 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLD---TFPYKCLNSL 544 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCBCC---CGGGTTCTTC
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh-HHHcCCCCCCEEECCCCcCCCCC---hhHHhCCCCC
Confidence 456666666665433 2 257788889999999999888765 66888899999999999887553 3456778889
Q ss_pred ceeecCCCccCh
Q 001983 313 AKLKVDGKEIST 324 (986)
Q Consensus 313 ~lL~LdgN~Is~ 324 (986)
+.|+|++|.++.
T Consensus 545 ~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 545 QVLDYSLNHIMT 556 (635)
T ss_dssp CEEECTTSCCCB
T ss_pred CEEECCCCcCCC
Confidence 999999998863
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=1.2e-19 Score=190.44 Aligned_cols=201 Identities=14% Similarity=0.181 Sum_probs=134.1
Q ss_pred chhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCC-CCccchhhHHhhhhhhhhhhccCCCccchhhc
Q 001983 76 LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-LSTSAAKGLLELRHTLEKIICHNSTNALRHVF 154 (986)
Q Consensus 76 L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~-Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~ 154 (986)
+..+|. + .++|++|+|++|.+++..+..|..+++|++|+|++|. ++...+..|..++
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~------------------- 80 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS------------------- 80 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT-------------------
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-------------------
Confidence 666676 3 3489999999999998888889999999999999997 8775554554443
Q ss_pred ccccccccCCCCCCCccEEEccC-Cccccchh-hhcCCCCCCEEECCCCCCCCCCCcCCcCCCC---eecCCCC-CcCCc
Q 001983 155 ASRIVEIKDSPQWNRLSFVSCSC-NRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKCVNLK---HLDLGFN-NLRSI 228 (986)
Q Consensus 155 ~~~l~~L~~l~~L~sL~~LdLS~-N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~---~LdLS~N-~Ls~L 228 (986)
+|++|++++ |.|+.+|. .|..+++|+.|++++|.++.++.+..+++|+ .|++++| .++.+
T Consensus 81 --------------~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i 146 (239)
T 2xwt_C 81 --------------KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146 (239)
T ss_dssp --------------TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEE
T ss_pred --------------CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhc
Confidence 566677766 66666653 4666667777777777766666666666666 7777777 66666
Q ss_pred cc-cccccccce-eeccCCCccCCcc--cCCCCCCCCEEEccCCC-CCCCchhhhhcCC-CCCcEEEecCCCCCCCcccc
Q 001983 229 AA-FSEVSCHIV-KLVLRNNALTTLR--GIENLKSLEGLDISYNI-ISTFSELEFLASL-PYLLNLWLEGNPLCCSRWYR 302 (986)
Q Consensus 229 ~~-l~~~L~sL~-~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~-Ls~lp~l~~L~~L-~~L~~L~Ls~NpLt~~~~~r 302 (986)
++ .+..+++|+ .|+|++|.|+.++ .+.. ++|+.|+|++|. ++.++. ..+..+ ++|+.|+|++|+++..+..
T Consensus 147 ~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~l~~l~~~- 223 (239)
T 2xwt_C 147 PVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTSVTALPSK- 223 (239)
T ss_dssp CTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCCCCCCCCT-
T ss_pred CcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCccccCChh-
Confidence 54 244456666 7777777666654 2233 567777777773 666543 445666 6677777777776644321
Q ss_pred hHHhhhcCCCceeecCCC
Q 001983 303 AQVFSYFAHPAKLKVDGK 320 (986)
Q Consensus 303 ~~~~~~l~~L~lL~LdgN 320 (986)
.++.++.+.+.++
T Consensus 224 -----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 -----GLEHLKELIARNT 236 (239)
T ss_dssp -----TCTTCSEEECTTC
T ss_pred -----HhccCceeeccCc
Confidence 3455666665554
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=1.3e-18 Score=201.33 Aligned_cols=221 Identities=19% Similarity=0.152 Sum_probs=126.4
Q ss_pred cccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhcc
Q 001983 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (986)
Q Consensus 65 l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~ 144 (986)
+..+++++|... .+| .+.++++|++|++++|.+++ +|..+ ++|++|+|++|.+++ +| .+..++.+..+.+.+
T Consensus 133 L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 133 LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence 344555555433 355 36666666666666666654 33322 366666666666665 33 456666655555666
Q ss_pred CCCccchhhcccccccccCCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCC
Q 001983 145 NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNN 224 (986)
Q Consensus 145 N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~ 224 (986)
|.+..++.. .++|+.|++++|.++.+| .+..+++|+.|++++|+++.++.+ +++|+.|++++|.
T Consensus 205 N~l~~l~~~-------------~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 205 NSLKKLPDL-------------PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNY 268 (454)
T ss_dssp SCCSSCCCC-------------CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSC
T ss_pred CcCCcCCCC-------------cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCc
Confidence 655443321 135666666666666665 366666666666666666665432 2556666666666
Q ss_pred cCCccccccccccceeeccCCCccCCcccC-----------------CCC-CCCCEEEccCCCCCCCchhhhhcCCCCCc
Q 001983 225 LRSIAAFSEVSCHIVKLVLRNNALTTLRGI-----------------ENL-KSLEGLDISYNIISTFSELEFLASLPYLL 286 (986)
Q Consensus 225 Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L-----------------~~L-~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~ 286 (986)
+++++.. +++|+.|++++|+++.++.+ ..+ ++|+.|+|++|.++.+|. .+++|+
T Consensus 269 l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~-----~~~~L~ 340 (454)
T 1jl5_A 269 LTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA-----LPPRLE 340 (454)
T ss_dssp CSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC-----CCTTCC
T ss_pred ccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccc-----cCCcCC
Confidence 5554432 13444555555444443211 112 467777777777776653 246777
Q ss_pred EEEecCCCCCCCcccchHHhhhcCCCceeecCCCccCh
Q 001983 287 NLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 287 ~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~ 324 (986)
.|++++|.++..+. .++.++.++|.+|++..
T Consensus 341 ~L~L~~N~l~~lp~-------~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 341 RLIASFNHLAEVPE-------LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp EEECCSSCCSCCCC-------CCTTCCEEECCSSCCSS
T ss_pred EEECCCCccccccc-------hhhhccEEECCCCCCCc
Confidence 77777777775442 24667777777777754
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=2.7e-19 Score=191.41 Aligned_cols=219 Identities=17% Similarity=0.133 Sum_probs=177.0
Q ss_pred EEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCC
Q 001983 30 VLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLP 109 (986)
Q Consensus 30 ~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~ 109 (986)
..+.....+..+|..+. ++ +..++++++......+..+.++++|++|+|++|.+....+..|..
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~--------------l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FS--------------TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TT--------------CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred eEEecCCCccccCCCCC--CC--------------ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC
Confidence 45555566666665432 11 234566766544433447889999999999999999888888999
Q ss_pred CCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCcccc--chhhh
Q 001983 110 FCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI--MDESL 187 (986)
Q Consensus 110 L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~--LP~sL 187 (986)
+++|++|+|++|.+++..+..|..++++..+.+.+|.+..+.... +..+++|++|++++|.++. +|..+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~l~~n~l~~~~l~~~~ 145 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP---------IGHLKTLKELNVAHNLIQSFKLPEYF 145 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCC---------CTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchh---------cccCCCCCEEECcCCccceecCchhh
Confidence 999999999999999988888999998888888888776655432 2357799999999999996 68899
Q ss_pred cCCCCCCEEECCCCCCCCCC--CcCCcCCCC----eecCCCCCcCCccccccccccceeeccCCCccCCcc--cCCCCCC
Q 001983 188 QLLPAVETLDLSRNKFAKVD--NLRKCVNLK----HLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR--GIENLKS 259 (986)
Q Consensus 188 ~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~----~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~s 259 (986)
..+++|+.|+|++|+++.++ .+..+++|+ .|++++|.++.+++......+|+.|+|++|+|+.++ .+..+++
T Consensus 146 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS 225 (276)
T ss_dssp GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhccccc
Confidence 99999999999999999864 566666666 899999999998875555568999999999999985 4788999
Q ss_pred CCEEEccCCCCCCC
Q 001983 260 LEGLDISYNIISTF 273 (986)
Q Consensus 260 L~~LdLS~N~Ls~l 273 (986)
|+.|+|++|.+...
T Consensus 226 L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 226 LQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEEECCSSCBCCC
T ss_pred ccEEEccCCccccc
Confidence 99999999999853
No 72
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=1.6e-20 Score=210.78 Aligned_cols=247 Identities=16% Similarity=0.155 Sum_probs=133.0
Q ss_pred ecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchh----hHHHhcCCCCCcEEEccCCCCC---CCCCc
Q 001983 33 LNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQ----LRRILKLLTSLKVVSALPPPAR---DPTPL 105 (986)
Q Consensus 33 L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~----Lp~~L~~L~nLk~L~Ls~N~Ls---~~lP~ 105 (986)
++...+..++..+..+++|+.| ++++|..... ++..+..+++|++|+|++|.+. +.+|.
T Consensus 16 l~~~~~~~l~~~l~~~~~L~~L--------------~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~ 81 (386)
T 2ca6_A 16 ITTEDEKSVFAVLLEDDSVKEI--------------VLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE 81 (386)
T ss_dssp CCSHHHHTTSHHHHHCSCCCEE--------------ECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHH
T ss_pred CCHHHHHHHHHHHhcCCCccEE--------------ECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhH
Confidence 3444555555555555544433 3444433332 3444667777777777775433 33444
Q ss_pred CC-------CCCCCccEEEeeCCCCCcc----chhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEE
Q 001983 106 SL-------LPFCRLKVLELRGCDLSTS----AAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVS 174 (986)
Q Consensus 106 sf-------~~L~nL~~LdLS~N~Lt~~----lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~Ld 174 (986)
.+ ..+++|++|+|++|.++.. +|..+.. +++|++|+
T Consensus 82 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~---------------------------------~~~L~~L~ 128 (386)
T 2ca6_A 82 ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK---------------------------------HTPLEHLY 128 (386)
T ss_dssp HHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHH---------------------------------CTTCCEEE
T ss_pred HHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHh---------------------------------CCCCCEEE
Confidence 33 5677777777777777652 3333332 23566666
Q ss_pred ccCCccc-----cchhhhcCC---------CCCCEEECCCCCCCC--CC----CcCCcCCCCeecCCCCCcC--C---cc
Q 001983 175 CSCNRLV-----IMDESLQLL---------PAVETLDLSRNKFAK--VD----NLRKCVNLKHLDLGFNNLR--S---IA 229 (986)
Q Consensus 175 LS~N~Lt-----~LP~sL~~L---------~~L~~LdLS~N~Ls~--L~----~L~~L~~L~~LdLS~N~Ls--~---L~ 229 (986)
|++|.|+ .++..+..+ ++|++|+|++|+|+. ++ .+..+++|+.|+|++|.|+ + +.
T Consensus 129 L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~ 208 (386)
T 2ca6_A 129 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208 (386)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHH
Confidence 6666665 222233333 666666666666652 22 3445566666666666665 1 11
Q ss_pred c-cccccccceeeccCCCccCC-----c-ccCCCCCCCCEEEccCCCCCCCchh---hhh--cCCCCCcEEEecCCCCCC
Q 001983 230 A-FSEVSCHIVKLVLRNNALTT-----L-RGIENLKSLEGLDISYNIISTFSEL---EFL--ASLPYLLNLWLEGNPLCC 297 (986)
Q Consensus 230 ~-l~~~L~sL~~L~Ls~N~Ls~-----L-~~L~~L~sL~~LdLS~N~Ls~lp~l---~~L--~~L~~L~~L~Ls~NpLt~ 297 (986)
+ ....+++|+.|+|++|.|+. + ..+..+++|+.|+|++|.|+..... ..+ ..+++|+.|+|++|+++.
T Consensus 209 ~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 1 33345666666666666632 2 2456666666666666666653111 223 236666677777666653
Q ss_pred Cc--ccchHHhhhcCCCceeecCCCccChhH
Q 001983 298 SR--WYRAQVFSYFAHPAKLKVDGKEISTRE 326 (986)
Q Consensus 298 ~~--~~r~~~~~~l~~L~lL~LdgN~Is~~e 326 (986)
.. .+....+..++.|+.+.|.+|+++...
T Consensus 289 ~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 289 DAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 10 011222234566666677777666554
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=1.8e-18 Score=200.41 Aligned_cols=220 Identities=20% Similarity=0.193 Sum_probs=178.4
Q ss_pred ccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCC
Q 001983 68 SDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST 147 (986)
Q Consensus 68 LdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L 147 (986)
++++++. +..+| .+..+++|++|+|++|.+++. | +..+++|++|+|++|.+++. + +..++++..+.+.+|.+
T Consensus 47 L~Ls~n~-l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 47 LDCHNSS-ITDMT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp EECCSSC-CCCCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCC
T ss_pred EEccCCC-cccCh-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcC
Confidence 4455543 33455 578899999999999999875 3 88999999999999999884 3 77888888888888876
Q ss_pred ccchhhcccccccccCCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCC-CCCCCCcCCcCCCCeecCCCCCcC
Q 001983 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNK-FAKVDNLRKCVNLKHLDLGFNNLR 226 (986)
Q Consensus 148 ~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~-Ls~L~~L~~L~~L~~LdLS~N~Ls 226 (986)
..++ +..+++|++|++++|+|+.++ +..+++|+.|++++|. +..+ .+..+++|+.|++++|+|+
T Consensus 119 ~~l~------------~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 119 TKLD------------VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp SCCC------------CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCC
T ss_pred Ceec------------CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccc
Confidence 6542 235679999999999999874 7889999999999994 4445 6888899999999999999
Q ss_pred CccccccccccceeeccCCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHh
Q 001983 227 SIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVF 306 (986)
Q Consensus 227 ~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~ 306 (986)
.++ ...+++|+.|++++|.|+.++ +..+++|+.|+|++|.|+++| +..+++|+.|++++|+++..+ +
T Consensus 184 ~l~--l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~------~ 250 (457)
T 3bz5_A 184 ELD--VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELD------V 250 (457)
T ss_dssp CCC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC------C
T ss_pred eec--cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcC------H
Confidence 986 556789999999999999884 888999999999999999976 678899999999999998654 2
Q ss_pred hhcCCCceeecCCCccC
Q 001983 307 SYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 307 ~~l~~L~lL~LdgN~Is 323 (986)
..++.++.+.+.+|.+.
T Consensus 251 ~~l~~L~~L~l~~n~L~ 267 (457)
T 3bz5_A 251 STLSKLTTLHCIQTDLL 267 (457)
T ss_dssp TTCTTCCEEECTTCCCS
T ss_pred HHCCCCCEEeccCCCCC
Confidence 34566777777776654
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=1.6e-18 Score=188.67 Aligned_cols=204 Identities=20% Similarity=0.162 Sum_probs=169.6
Q ss_pred CCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccchh
Q 001983 106 SLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE 185 (986)
Q Consensus 106 sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~ 185 (986)
.+..+++|+.|++++|.++. +|..+. +.+..+.+.+|.+..+.... +..+++|++|+|++|.|+.++.
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~---------~~~l~~L~~L~L~~n~l~~~~~ 72 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLAT---------LMPYTRLTQLNLDRAELTKLQV 72 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGG---------GTTCTTCCEEECTTSCCCEEEC
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHH---------hhcCCCCCEEECCCCccCcccC
Confidence 36788999999999999987 444443 34455667788776554322 2256799999999999998876
Q ss_pred hhcCCCCCCEEECCCCCCCCCC-CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCcc--cCCCCCCCC
Q 001983 186 SLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLE 261 (986)
Q Consensus 186 sL~~L~~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~ 261 (986)
. ..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|+|+.+++ .+..+++|+.|+|++|+|+.++ .+..+++|+
T Consensus 73 ~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 73 D-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp C-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred C-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 5 78999999999999999987 68889999999999999999885 5667899999999999999985 478999999
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChhHH
Q 001983 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (986)
Q Consensus 262 ~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~ 327 (986)
.|+|++|+|+.++. ..+..+++|+.|+|++|+|+..+. .+.....++.+.|.+|++.|.+.
T Consensus 152 ~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip~----~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 152 KLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIPK----GFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp EEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCCCSEEECCSCCBCCSGG
T ss_pred EEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCccCh----hhcccccCCeEEeCCCCccCcCc
Confidence 99999999999985 667889999999999999986652 23345689999999999998763
No 75
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=8.9e-19 Score=190.64 Aligned_cols=198 Identities=20% Similarity=0.217 Sum_probs=163.9
Q ss_pred cCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccC
Q 001983 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (986)
Q Consensus 84 ~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~ 163 (986)
..+++|+.|++++|.+... + .+..+++|++|+|++|.+++..+ +.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~------------------------------- 87 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LA------------------------------- 87 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GT-------------------------------
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cc-------------------------------
Confidence 4588999999999999855 3 48899999999999999987433 22
Q ss_pred CCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeecc
Q 001983 164 SPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (986)
Q Consensus 164 l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~L 243 (986)
.+++|++|++++|.++.+|. +..+++|+.|+|++|+++.++.+..+++|+.|+|++|.++.++ ....+++|+.|+|
T Consensus 88 --~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L 163 (291)
T 1h6t_A 88 --NLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSL 163 (291)
T ss_dssp --TCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred --cCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcch-hhccCCCCCEEEc
Confidence 24589999999999998765 8999999999999999999999999999999999999999984 4556799999999
Q ss_pred CCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 244 RNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 244 s~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
++|.|+.++.+..+++|+.|+|++|.|+.++. +..+++|+.|++++|+++..+......+...+ ....+++..+.
T Consensus 164 ~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~---l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~~~--~l~~l~~~~i~ 238 (291)
T 1h6t_A 164 EDNQISDIVPLAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLELFSQECLNKPINHQSNLVVPN--TVKNTDGSLVT 238 (291)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCSEEEEEEEEEECCCEECCSEEEEEC--CCBCTTSCBCC
T ss_pred cCCccccchhhcCCCccCEEECCCCcCCCChh---hccCCCCCEEECcCCcccCCccccccccEEcc--eEECCCCCCcC
Confidence 99999998779999999999999999999863 78999999999999999876543332222222 33456777665
Q ss_pred hh
Q 001983 324 TR 325 (986)
Q Consensus 324 ~~ 325 (986)
..
T Consensus 239 ~~ 240 (291)
T 1h6t_A 239 PE 240 (291)
T ss_dssp EE
T ss_pred CC
Confidence 43
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=3.5e-19 Score=194.51 Aligned_cols=203 Identities=20% Similarity=0.159 Sum_probs=163.2
Q ss_pred CCCCCcEEEccCCCCCCCCCcCC--CCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhccccccccc
Q 001983 85 LLTSLKVVSALPPPARDPTPLSL--LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (986)
Q Consensus 85 ~L~nLk~L~Ls~N~Ls~~lP~sf--~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~ 162 (986)
.+++|++|+|++|.+.+..|..+ ..+++|++|+|++|.+++..+. +....
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-~~~~~--------------------------- 140 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-LAELQ--------------------------- 140 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS-HHHHH---------------------------
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh-hHHHH---------------------------
Confidence 35779999999999999999888 8999999999999999874331 11100
Q ss_pred CCCCCCCccEEEccCCccccch-hhhcCCCCCCEEECCCCCCCC---CC---CcCCcCCCCeecCCCCCcCCcccc----
Q 001983 163 DSPQWNRLSFVSCSCNRLVIMD-ESLQLLPAVETLDLSRNKFAK---VD---NLRKCVNLKHLDLGFNNLRSIAAF---- 231 (986)
Q Consensus 163 ~l~~L~sL~~LdLS~N~Lt~LP-~sL~~L~~L~~LdLS~N~Ls~---L~---~L~~L~~L~~LdLS~N~Ls~L~~l---- 231 (986)
...+++|++|++++|.+..++ ..+..+++|++|+|++|++.. ++ .+..+++|++|+|++|+|+.++..
T Consensus 141 -~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 141 -QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp -TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred -hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 013568999999999999666 578899999999999999865 21 346889999999999999887763
Q ss_pred ccccccceeeccCCCccCCc-c-cCCCC---CCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHh
Q 001983 232 SEVSCHIVKLVLRNNALTTL-R-GIENL---KSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVF 306 (986)
Q Consensus 232 ~~~L~sL~~L~Ls~N~Ls~L-~-~L~~L---~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~ 306 (986)
...+++|+.|+|++|+|+.+ | .+..+ ++|++|+|++|.|+.+|. .+ .++|+.|+|++|+|+..+. +
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~~--~~~L~~L~Ls~N~l~~~~~-----~ 290 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK--GL--PAKLRVLDLSSNRLNRAPQ-----P 290 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS--CC--CSCCSCEECCSCCCCSCCC-----T
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh--hh--cCCCCEEECCCCcCCCCch-----h
Confidence 44568999999999999986 3 45555 799999999999998873 33 3799999999999986532 4
Q ss_pred hhcCCCceeecCCCccChh
Q 001983 307 SYFAHPAKLKVDGKEISTR 325 (986)
Q Consensus 307 ~~l~~L~lL~LdgN~Is~~ 325 (986)
..++.++.++|++|+++..
T Consensus 291 ~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 291 DELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp TSCCCCSCEECSSTTTSCC
T ss_pred hhCCCccEEECcCCCCCCC
Confidence 5678899999999998753
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=1.4e-18 Score=186.38 Aligned_cols=179 Identities=22% Similarity=0.321 Sum_probs=153.9
Q ss_pred hcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhccccccccc
Q 001983 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (986)
Q Consensus 83 L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~ 162 (986)
+..+++|+.|++.+|.+... ..+..+++|++|+|++|.+++. + .+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~-~l~------------------------------ 82 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI-S-ALK------------------------------ 82 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC-G-GGT------------------------------
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc-h-hhc------------------------------
Confidence 34588999999999998743 3588999999999999999862 2 221
Q ss_pred CCCCCCCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCcccc-ccccccc
Q 001983 163 DSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHI 238 (986)
Q Consensus 163 ~l~~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~l-~~~L~sL 238 (986)
.+++|++|++++|.++.+|. .+..+++|++|+|++|+++.++ .+..+++|+.|+|++|.|+.+++. +..+++|
T Consensus 83 ---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 83 ---ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp ---TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ---CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 34589999999999997776 4789999999999999999886 488999999999999999998763 4568999
Q ss_pred eeeccCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 001983 239 VKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (986)
Q Consensus 239 ~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~ 299 (986)
+.|+|++|+|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|++.|.+
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCT
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCCccccC
Confidence 99999999999985 47899999999999999999875 66789999999999999999876
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=4.3e-18 Score=180.31 Aligned_cols=175 Identities=22% Similarity=0.310 Sum_probs=137.5
Q ss_pred CCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCC
Q 001983 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (986)
Q Consensus 87 ~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~ 166 (986)
...+.++++++.+. .+|..+. ++|+.|+|++|.+++..+..|..
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~--------------------------------- 57 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRG--------------------------------- 57 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTT---------------------------------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcC---------------------------------
Confidence 35667788777776 3444443 57888888888887755543322
Q ss_pred CCCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCcccc-ccccccceeec
Q 001983 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLV 242 (986)
Q Consensus 167 L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~l-~~~L~sL~~L~ 242 (986)
+++|++|+|++|.|+.++. .|..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++. +..+++|+.|+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 3477888888888886554 4778888888888888888765 577888888888888888887763 45578899999
Q ss_pred cCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001983 243 LRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (986)
Q Consensus 243 Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~ 298 (986)
|++|+|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|+|.|.
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCceeCC
Confidence 9999998875 58899999999999999999875 5788999999999999999988
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=3.9e-18 Score=205.18 Aligned_cols=231 Identities=22% Similarity=0.175 Sum_probs=157.0
Q ss_pred ccCCeEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCC
Q 001983 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (986)
Q Consensus 25 L~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP 104 (986)
...++.|+++.+.+..+|.. +++|+.|. +++|. +..+|. .+++|++|+|++|.+++. |
T Consensus 60 ~~~L~~L~L~~N~l~~lp~~---l~~L~~L~--------------Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l~~l-~ 117 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPAL---PPELRTLE--------------VSGNQ-LTSLPV---LPPGLLELSIFSNPLTHL-P 117 (622)
T ss_dssp CTTCSEEEECSCCCSCCCCC---CTTCCEEE--------------ECSCC-CSCCCC---CCTTCCEEEECSCCCCCC-C
T ss_pred CCCCcEEEecCCCCCCCCCc---CCCCCEEE--------------cCCCc-CCcCCC---CCCCCCEEECcCCcCCCC-C
Confidence 35678999999999988873 33344333 23222 222332 345555555555555432 2
Q ss_pred cCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcc---------cccccccCCCCCCCccEEEc
Q 001983 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFA---------SRIVEIKDSPQWNRLSFVSC 175 (986)
Q Consensus 105 ~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~---------~~l~~L~~l~~L~sL~~LdL 175 (986)
. .+++|+.|+|++|.|+. +|..+ +++..+.+.+|.+..++..+. +.+..++ ..+++|+.|++
T Consensus 118 ~---~l~~L~~L~L~~N~l~~-lp~~l---~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~L 188 (622)
T 3g06_A 118 A---LPSGLCKLWIFGNQLTS-LPVLP---PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP--MLPSGLQELSV 188 (622)
T ss_dssp C---CCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEEC
T ss_pred C---CCCCcCEEECCCCCCCc-CCCCC---CCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc--ccCCCCcEEEC
Confidence 1 33444555555554444 22221 233333344444433332110 0111111 23578999999
Q ss_pred cCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcccCC
Q 001983 176 SCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 255 (986)
Q Consensus 176 S~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~ 255 (986)
++|.|+.+|.. +++|+.|++++|.|+.++.. +++|+.|+|++|.|+.++ ..+++|+.|+|++|+|+.++.
T Consensus 189 s~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~-- 258 (622)
T 3g06_A 189 SDNQLASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM-- 258 (622)
T ss_dssp CSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--
T ss_pred CCCCCCCCCCc---cchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc--
Confidence 99999998764 57899999999999998753 589999999999999987 345899999999999999986
Q ss_pred CCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001983 256 NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (986)
Q Consensus 256 ~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~ 298 (986)
.+++|+.|+|++|.|+.+| ..+..+++|+.|+|++|+++..
T Consensus 259 ~~~~L~~L~Ls~N~L~~lp--~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 259 LPSGLLSLSVYRNQLTRLP--ESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CCTTCCEEECCSSCCCSCC--GGGGGSCTTCEEECCSCCCCHH
T ss_pred ccccCcEEeCCCCCCCcCC--HHHhhccccCEEEecCCCCCCc
Confidence 7889999999999999987 5689999999999999999854
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=2.5e-18 Score=188.37 Aligned_cols=206 Identities=22% Similarity=0.261 Sum_probs=177.1
Q ss_pred ccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEE
Q 001983 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFV 173 (986)
Q Consensus 94 Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~L 173 (986)
+..+.+.+.. .+..+++|+.|++++|.++. ++ .+..++++..+.+.+|.+..++. +..+++|++|
T Consensus 26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-----------~~~l~~L~~L 90 (308)
T 1h6u_A 26 AGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-----------LKNLTKITEL 90 (308)
T ss_dssp TTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-----------GTTCCSCCEE
T ss_pred hCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-----------HccCCCCCEE
Confidence 4445554332 35578999999999999987 34 68888888888888888776654 2357799999
Q ss_pred EccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCccc
Q 001983 174 SCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRG 253 (986)
Q Consensus 174 dLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~ 253 (986)
++++|.++.+| .+..+++|+.|+|++|.++.++.+..+++|+.|+|++|.++.+++ ...+++|+.|+|++|.|+.++.
T Consensus 91 ~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 168 (308)
T 1h6u_A 91 ELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP 168 (308)
T ss_dssp ECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG
T ss_pred EccCCcCCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh
Confidence 99999999886 688999999999999999999889999999999999999999887 4567999999999999999988
Q ss_pred CCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccCh
Q 001983 254 IENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 254 L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~ 324 (986)
+..+++|+.|+|++|.|+.++. +..+++|+.|+|++|++...+ .+..++.|+.+.|.+|+++.
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~-----~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS-----PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCG-----GGTTCTTCCEEEEEEEEEEC
T ss_pred hcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCccc-----cccCCCCCCEEEccCCeeec
Confidence 9999999999999999999874 788999999999999998664 25778999999999999974
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=5.4e-19 Score=198.35 Aligned_cols=224 Identities=18% Similarity=0.125 Sum_probs=174.9
Q ss_pred CchhhHHHhcCCCCCcEEEccCCCCCCCC----CcCCCCCCCccEEEeeCCCC---CccchhhHHhhhhhhhhhhccCCC
Q 001983 75 ALEQLRRILKLLTSLKVVSALPPPARDPT----PLSLLPFCRLKVLELRGCDL---STSAAKGLLELRHTLEKIICHNST 147 (986)
Q Consensus 75 ~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~l----P~sf~~L~nL~~LdLS~N~L---t~~lp~~L~~L~~LL~LLL~~N~L 147 (986)
.+..++..+..+++|+.|+|++|.+.... +..|..+++|++|+|++|.+ ++.+|.++..+...
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~---------- 89 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA---------- 89 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH----------
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH----------
Confidence 35567778888999999999999998653 34588999999999999754 45566666554421
Q ss_pred ccchhhcccccccccCCCCCCCccEEEccCCcccc-----chhhhcCCCCCCEEECCCCCCCCC-----C-CcCCc----
Q 001983 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI-----MDESLQLLPAVETLDLSRNKFAKV-----D-NLRKC---- 212 (986)
Q Consensus 148 ~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~-----LP~sL~~L~~L~~LdLS~N~Ls~L-----~-~L~~L---- 212 (986)
+..+++|++|+|++|.|+. +|..+..+++|+.|+|++|.|+.. + .+..+
T Consensus 90 ----------------l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~ 153 (386)
T 2ca6_A 90 ----------------LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153 (386)
T ss_dssp ----------------HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhh
Confidence 1235689999999999985 788899999999999999999742 1 34444
Q ss_pred -----CCCCeecCCCCCcC--Cccc---cccccccceeeccCCCccCC------cc-cCCCCCCCCEEEccCCCCC----
Q 001983 213 -----VNLKHLDLGFNNLR--SIAA---FSEVSCHIVKLVLRNNALTT------LR-GIENLKSLEGLDISYNIIS---- 271 (986)
Q Consensus 213 -----~~L~~LdLS~N~Ls--~L~~---l~~~L~sL~~L~Ls~N~Ls~------L~-~L~~L~sL~~LdLS~N~Ls---- 271 (986)
++|+.|+|++|+|+ .++. .+..+++|+.|+|++|+|+. ++ .+..+++|+.|+|++|.|+
T Consensus 154 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~ 233 (386)
T 2ca6_A 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233 (386)
T ss_dssp HHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH
T ss_pred hcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH
Confidence 89999999999997 4443 33457899999999999983 34 7889999999999999995
Q ss_pred -CCchhhhhcCCCCCcEEEecCCCCCCCcc-cchHHhhh--cCCCceeecCCCccChhH
Q 001983 272 -TFSELEFLASLPYLLNLWLEGNPLCCSRW-YRAQVFSY--FAHPAKLKVDGKEISTRE 326 (986)
Q Consensus 272 -~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~-~r~~~~~~--l~~L~lL~LdgN~Is~~e 326 (986)
.++ ..+..+++|+.|+|++|+++.... .....+.. ++.|+.+.|.+|.++...
T Consensus 234 ~~l~--~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 234 SALA--IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp HHHH--HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HHHH--HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 333 567899999999999999975421 11233433 788999999999999754
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=1.3e-18 Score=190.07 Aligned_cols=196 Identities=19% Similarity=0.145 Sum_probs=156.6
Q ss_pred cccccCCCCCCchhhHHHh--cCCCCCcEEEccCCCCCCCCC----cCCCCCCCccEEEeeCCCCCccchhhHHhhhhhh
Q 001983 65 AYVSDLGDHRALEQLRRIL--KLLTSLKVVSALPPPARDPTP----LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTL 138 (986)
Q Consensus 65 l~vLdLs~~~~L~~Lp~~L--~~L~nLk~L~Ls~N~Ls~~lP----~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL 138 (986)
+..+++++|...+.+|..+ ..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|.+++..|..+.
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~------ 166 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR------ 166 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC------
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc------
Confidence 4456778887777777776 889999999999999987655 4456799999999999999876554443
Q ss_pred hhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCcccc---chh--hhcCCCCCCEEECCCCCCCCCCC-----
Q 001983 139 EKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI---MDE--SLQLLPAVETLDLSRNKFAKVDN----- 208 (986)
Q Consensus 139 ~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~---LP~--sL~~L~~L~~LdLS~N~Ls~L~~----- 208 (986)
.+++|++|+|++|++.. ++. .+..+++|++|+|++|+++.++.
T Consensus 167 ---------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 167 ---------------------------AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp ---------------------------CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred ---------------------------cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 34589999999998763 433 24688999999999999987653
Q ss_pred cCCcCCCCeecCCCCCcCCc-ccccccc---ccceeeccCCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCC
Q 001983 209 LRKCVNLKHLDLGFNNLRSI-AAFSEVS---CHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPY 284 (986)
Q Consensus 209 L~~L~~L~~LdLS~N~Ls~L-~~l~~~L---~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~ 284 (986)
+..+++|++|+|++|.|+.+ |.....+ ++|+.|+|++|+|+.+|... .++|+.|+|++|+|+++|. +..+++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~~---~~~l~~ 295 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAPQ---PDELPE 295 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSCCC---TTSCCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCCch---hhhCCC
Confidence 46789999999999999987 4433333 69999999999999886322 3799999999999999864 578899
Q ss_pred CcEEEecCCCCCC
Q 001983 285 LLNLWLEGNPLCC 297 (986)
Q Consensus 285 L~~L~Ls~NpLt~ 297 (986)
|+.|+|++|+|+.
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999999974
No 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=2e-18 Score=196.80 Aligned_cols=288 Identities=20% Similarity=0.156 Sum_probs=138.5
Q ss_pred ccCCeEEEecCCCcccc-hhhh-hccc----cchhcccCCCccccccccccCCCCCCc----hhhHHHhcCCCCCcEEEc
Q 001983 25 IEGSIVLKLNPAGLHYV-QSRL-EALR----ELERLLAGAPLDYLRAYVSDLGDHRAL----EQLRRILKLLTSLKVVSA 94 (986)
Q Consensus 25 L~~l~~L~L~~~~L~~L-p~~L-~~L~----~Le~L~l~~~l~~l~l~vLdLs~~~~L----~~Lp~~L~~L~nLk~L~L 94 (986)
...++.|+++.+.+... +..+ ..++ +|+. +++++|... ..++..+..+++|++|+|
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~--------------L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 120 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK--------------LSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCE--------------EECTTSCCBGGGHHHHHHHTTSCTTCCEEEC
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeE--------------EEccCCCCCHHHHHHHHHHHccCCceeEEEC
Confidence 35678999988887642 2222 2233 2333 445555433 356667777777777777
Q ss_pred cCCCCCCCCCcC-----CCCCCCccEEEeeCCCCCccc----hhhHHhhhhhhhhhhccCCCccchhh-cccccc-----
Q 001983 95 LPPPARDPTPLS-----LLPFCRLKVLELRGCDLSTSA----AKGLLELRHTLEKIICHNSTNALRHV-FASRIV----- 159 (986)
Q Consensus 95 s~N~Ls~~lP~s-----f~~L~nL~~LdLS~N~Lt~~l----p~~L~~L~~LL~LLL~~N~L~~L~~l-~~~~l~----- 159 (986)
++|.+.+..+.. +...++|++|+|++|.+++.. +..+..++++..+.+.+|.+...... +...+.
T Consensus 121 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~ 200 (461)
T 1z7x_W 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCC
T ss_pred CCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCC
Confidence 777765332222 222456777777777766533 34444455555555555554321110 000000
Q ss_pred --c---------------cc-CCCCCCCccEEEccCCccccc-----hh-hhcCCCCCCEEECCCCCCCC-----CC-Cc
Q 001983 160 --E---------------IK-DSPQWNRLSFVSCSCNRLVIM-----DE-SLQLLPAVETLDLSRNKFAK-----VD-NL 209 (986)
Q Consensus 160 --~---------------L~-~l~~L~sL~~LdLS~N~Lt~L-----P~-sL~~L~~L~~LdLS~N~Ls~-----L~-~L 209 (986)
. +. .+..+++|+.|++++|.++.. +. .+..+++|+.|+|++|.++. ++ .+
T Consensus 201 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 280 (461)
T 1z7x_W 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280 (461)
T ss_dssp CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH
Confidence 0 00 001234455555555554421 11 12234555555555555554 21 33
Q ss_pred CCcCCCCeecCCCCCcCCccc--c----ccccccceeeccCCCccCCc------ccCCCCCCCCEEEccCCCCCCCchh-
Q 001983 210 RKCVNLKHLDLGFNNLRSIAA--F----SEVSCHIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIISTFSEL- 276 (986)
Q Consensus 210 ~~L~~L~~LdLS~N~Ls~L~~--l----~~~L~sL~~L~Ls~N~Ls~L------~~L~~L~sL~~LdLS~N~Ls~lp~l- 276 (986)
..+++|+.|+|++|.++.... + ....++|+.|+|++|.++.. ..+..+++|+.|+|++|.|++....
T Consensus 281 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 445555555555555543211 0 11123555566665555542 1334456666666666665543211
Q ss_pred --hhhc-CCCCCcEEEecCCCCCCCc-ccchHHhhhcCCCceeecCCCccChhH
Q 001983 277 --EFLA-SLPYLLNLWLEGNPLCCSR-WYRAQVFSYFAHPAKLKVDGKEISTRE 326 (986)
Q Consensus 277 --~~L~-~L~~L~~L~Ls~NpLt~~~-~~r~~~~~~l~~L~lL~LdgN~Is~~e 326 (986)
..+. .+++|+.|+|++|.++... ......+..++.|+.++|.+|+++...
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHH
Confidence 1111 1456666666666665211 011233445566666666666666543
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=1.4e-18 Score=197.98 Aligned_cols=281 Identities=17% Similarity=0.142 Sum_probs=177.3
Q ss_pred ccCCeEEEecCCCcc-----cchhhhhccccchhcccCCCccccccccccCCCCCCchhhH-HHhcCCC----CCcEEEc
Q 001983 25 IEGSIVLKLNPAGLH-----YVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLR-RILKLLT----SLKVVSA 94 (986)
Q Consensus 25 L~~l~~L~L~~~~L~-----~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp-~~L~~L~----nLk~L~L 94 (986)
+..++.|++..+.+. .++..+..+++|+. +++++|......+ .....++ +|++|+|
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~--------------L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 92 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAE--------------LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 92 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCE--------------EECTTCCCHHHHHHHHHHTTCSTTCCCCEEEC
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCE--------------EeCCCCcCChHHHHHHHHHHhhCCCceeEEEc
Confidence 445677777777766 34555555554443 4566665444333 3344566 7999999
Q ss_pred cCCCCCC----CCCcCCCCCCCccEEEeeCCCCCccchhhHHh-----hhhhhhhhhccCCCccchhh-cccccccccCC
Q 001983 95 LPPPARD----PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLE-----LRHTLEKIICHNSTNALRHV-FASRIVEIKDS 164 (986)
Q Consensus 95 s~N~Ls~----~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~-----L~~LL~LLL~~N~L~~L~~l-~~~~l~~L~~l 164 (986)
++|.+.. .+|..|..+++|++|+|++|.++...+..+.. .+++..+.+.+|.+...... ++..+
T Consensus 93 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l------ 166 (461)
T 1z7x_W 93 QNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL------ 166 (461)
T ss_dssp TTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH------
T ss_pred cCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH------
Confidence 9999884 45788899999999999999998765655544 22355566777765442211 11111
Q ss_pred CCCCCccEEEccCCccccch-----hhhc-CCCCCCEEECCCCCCCCC-----C-CcCCcCCCCeecCCCCCcCCcc---
Q 001983 165 PQWNRLSFVSCSCNRLVIMD-----ESLQ-LLPAVETLDLSRNKFAKV-----D-NLRKCVNLKHLDLGFNNLRSIA--- 229 (986)
Q Consensus 165 ~~L~sL~~LdLS~N~Lt~LP-----~sL~-~L~~L~~LdLS~N~Ls~L-----~-~L~~L~~L~~LdLS~N~Ls~L~--- 229 (986)
..+++|+.|++++|.++..+ ..+. .+++|+.|+|++|.++.. + .+..+++|+.|+|++|.++...
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 246 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence 12457888888888876321 2221 356788888888887762 2 4566788888888888776532
Q ss_pred ---ccccccccceeeccCCCccCC-----c-ccCCCCCCCCEEEccCCCCCCCchhhhh-----cCCCCCcEEEecCCCC
Q 001983 230 ---AFSEVSCHIVKLVLRNNALTT-----L-RGIENLKSLEGLDISYNIISTFSELEFL-----ASLPYLLNLWLEGNPL 295 (986)
Q Consensus 230 ---~l~~~L~sL~~L~Ls~N~Ls~-----L-~~L~~L~sL~~LdLS~N~Ls~lp~l~~L-----~~L~~L~~L~Ls~NpL 295 (986)
.....+++|+.|+|++|.|+. + ..+..+++|+.|+|++|.|++... ..+ ...++|+.|+|++|.+
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA-RLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH-HHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH-HHHHHHhccCCccceeeEcCCCCC
Confidence 122235778888888888776 3 245667788888888887764322 112 1235788888888877
Q ss_pred CCCc-ccchHHhhhcCCCceeecCCCccChhH
Q 001983 296 CCSR-WYRAQVFSYFAHPAKLKVDGKEISTRE 326 (986)
Q Consensus 296 t~~~-~~r~~~~~~l~~L~lL~LdgN~Is~~e 326 (986)
+... ......+..++.++.++|.+|.+....
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence 6542 112334555677788888888776543
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=3.1e-18 Score=191.23 Aligned_cols=252 Identities=15% Similarity=0.130 Sum_probs=166.0
Q ss_pred CCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCC----cCCCCCC-CccEEEeeCCCCCccchhhHHhh-----hhhhh
Q 001983 70 LGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP----LSLLPFC-RLKVLELRGCDLSTSAAKGLLEL-----RHTLE 139 (986)
Q Consensus 70 Ls~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP----~sf~~L~-nL~~LdLS~N~Lt~~lp~~L~~L-----~~LL~ 139 (986)
++.+...+.+|..+...++|++|+|++|.+.+..+ ..|..++ +|++|+|++|.|++..+..+..+ +.+..
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 44444445556555555556667766666665555 5555666 66667777666666555555554 55555
Q ss_pred hhhccCCCccchhh-cccccccccCCCCC-CCccEEEccCCccccchh-----hhcCC-CCCCEEECCCCCCCCCC----
Q 001983 140 KIICHNSTNALRHV-FASRIVEIKDSPQW-NRLSFVSCSCNRLVIMDE-----SLQLL-PAVETLDLSRNKFAKVD---- 207 (986)
Q Consensus 140 LLL~~N~L~~L~~l-~~~~l~~L~~l~~L-~sL~~LdLS~N~Lt~LP~-----sL~~L-~~L~~LdLS~N~Ls~L~---- 207 (986)
+.+.+|.+...... +...+. .+ ++|+.|++++|.|+..+. .+..+ ++|++|+|++|.|+...
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~------~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLA------AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHH------TSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred EECcCCcCChHHHHHHHHHHH------hCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 55666554432221 111111 22 589999999999985543 34453 58999999999998531
Q ss_pred --CcCCcC-CCCeecCCCCCcCCccc-----ccccc-ccceeeccCCCccCC-----cc-cCCC-CCCCCEEEccCCCCC
Q 001983 208 --NLRKCV-NLKHLDLGFNNLRSIAA-----FSEVS-CHIVKLVLRNNALTT-----LR-GIEN-LKSLEGLDISYNIIS 271 (986)
Q Consensus 208 --~L~~L~-~L~~LdLS~N~Ls~L~~-----l~~~L-~sL~~L~Ls~N~Ls~-----L~-~L~~-L~sL~~LdLS~N~Ls 271 (986)
.+..++ +|+.|+|++|.|+.... ....+ ++|+.|+|++|.|+. ++ .+.. .++|+.|+|++|.|+
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 345554 89999999999986553 22234 589999999999988 32 4444 458999999999999
Q ss_pred CCch---hhhhcCCCCCcEEEecCCCCCCCccc----chHHhhhcCCCceeecCCCccChhHH
Q 001983 272 TFSE---LEFLASLPYLLNLWLEGNPLCCSRWY----RAQVFSYFAHPAKLKVDGKEISTREL 327 (986)
Q Consensus 272 ~lp~---l~~L~~L~~L~~L~Ls~NpLt~~~~~----r~~~~~~l~~L~lL~LdgN~Is~~e~ 327 (986)
..+. ...+..+++|+.|+|++|.+...... ....+..++.++.++|++|++.....
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 8754 13457789999999999986543211 11224456678889999999987643
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.2e-17 Score=200.21 Aligned_cols=176 Identities=22% Similarity=0.235 Sum_probs=149.5
Q ss_pred hcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhccccccccc
Q 001983 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (986)
Q Consensus 83 L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~ 162 (986)
+..|++|+.|+|++|.+... | .|..+++|+.|+|++|.|++..| +..
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~----------------------------- 85 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTN----------------------------- 85 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGG-----------------------------
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hcc-----------------------------
Confidence 35688899999999998754 3 58899999999999999987443 222
Q ss_pred CCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeec
Q 001983 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (986)
Q Consensus 163 ~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~ 242 (986)
+++|+.|+|++|.|..+| .+..+++|+.|+|++|.|..++.+..+++|+.|+|++|.|+.+ ..+..+++|+.|+
T Consensus 86 ----l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 86 ----LKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLS 159 (605)
T ss_dssp ----CTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEE
T ss_pred ----CCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEE
Confidence 457999999999999876 6888999999999999999998899999999999999999988 4445678999999
Q ss_pred cCCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001983 243 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (986)
Q Consensus 243 Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~ 300 (986)
|++|.|+.++.+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|++...+.
T Consensus 160 Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 160 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG---GGTTCTTCSEEECCSEEEECCCC
T ss_pred CcCCcCCCchhhccCCCCCEEECcCCCCCCCh---HHccCCCCCEEEccCCcCcCCcc
Confidence 99999999866999999999999999999875 37889999999999999887653
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=2e-17 Score=173.47 Aligned_cols=181 Identities=18% Similarity=0.206 Sum_probs=151.0
Q ss_pred CCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCc-c
Q 001983 102 PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNR-L 180 (986)
Q Consensus 102 ~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~-L 180 (986)
.+|. +. ++|++|+|++|.+++..+..|.. +++|+.|++++|. +
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~---------------------------------l~~L~~L~l~~n~~l 68 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSN---------------------------------LPNISRIYVSIDVTL 68 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTT---------------------------------CTTCCEEEEECCSSC
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccC---------------------------------CCCCcEEeCCCCCCc
Confidence 4555 43 48999999999998755544433 4589999999997 9
Q ss_pred ccchh-hhcCCCCCCEEECCC-CCCCCCC--CcCCcCCCCeecCCCCCcCCccccccccccce---eeccCCC-ccCCcc
Q 001983 181 VIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIV---KLVLRNN-ALTTLR 252 (986)
Q Consensus 181 t~LP~-sL~~L~~L~~LdLS~-N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~---~L~Ls~N-~Ls~L~ 252 (986)
+.+|. .|..+++|++|+|++ |.|+.++ .|..+++|+.|+|++|.++.++. +..+++|+ .|++++| .|+.++
T Consensus 69 ~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~ 147 (239)
T 2xwt_C 69 QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP 147 (239)
T ss_dssp CEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC
T ss_pred ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcC
Confidence 98876 789999999999999 9999876 68899999999999999999887 55567777 9999999 999985
Q ss_pred --cCCCCCCCC-EEEccCCCCCCCchhhhhcCCCCCcEEEecCCC-CCCCcccchHHhhhc-CCCceeecCCCccCh
Q 001983 253 --GIENLKSLE-GLDISYNIISTFSELEFLASLPYLLNLWLEGNP-LCCSRWYRAQVFSYF-AHPAKLKVDGKEIST 324 (986)
Q Consensus 253 --~L~~L~sL~-~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~Np-Lt~~~~~r~~~~~~l-~~L~lL~LdgN~Is~ 324 (986)
.+..+++|+ .|+|++|.|+.++. ..+.. ++|+.|+|++|+ +...+ ...+..+ +.++.++|.+|++..
T Consensus 148 ~~~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L~~L~L~~n~~l~~i~---~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 148 VNAFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKLDAVYLNKNKYLTVID---KDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp TTTTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEEEEEECTTCTTCCEEC---TTTTTTCSBCCSEEECTTCCCCC
T ss_pred cccccchhcceeEEEcCCCCCcccCH-hhcCC-CCCCEEEcCCCCCcccCC---HHHhhccccCCcEEECCCCcccc
Confidence 589999999 99999999998875 34444 899999999996 87443 4556677 899999999999875
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=6.1e-17 Score=171.46 Aligned_cols=170 Identities=18% Similarity=0.205 Sum_probs=144.2
Q ss_pred ccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCC
Q 001983 68 SDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST 147 (986)
Q Consensus 68 LdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L 147 (986)
++++++ .+..+|..+. ++|+.|+|++|.+.+..+..|..+++|++|+|++|.|++..+..|..
T Consensus 19 l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------- 81 (251)
T 3m19_A 19 VDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD-------------- 81 (251)
T ss_dssp EECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--------------
T ss_pred EecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc--------------
Confidence 444443 3555665443 68999999999999999989999999999999999998865544433
Q ss_pred ccchhhcccccccccCCCCCCCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCC
Q 001983 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNN 224 (986)
Q Consensus 148 ~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~ 224 (986)
+++|++|+|++|.|+.+|. .|..+++|++|+|++|.|+.++ .+..+++|+.|+|++|+
T Consensus 82 -------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 82 -------------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp -------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc
Confidence 4589999999999998775 6789999999999999999986 47889999999999999
Q ss_pred cCCccc-cccccccceeeccCCCccCCcc--cCCCCCCCCEEEccCCCCCCC
Q 001983 225 LRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTF 273 (986)
Q Consensus 225 Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l 273 (986)
|+.+++ .+..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|.+...
T Consensus 143 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999887 4666899999999999999985 688999999999999999875
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=1.5e-16 Score=170.67 Aligned_cols=196 Identities=20% Similarity=0.238 Sum_probs=163.1
Q ss_pred CcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCC
Q 001983 89 LKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWN 168 (986)
Q Consensus 89 Lk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~ 168 (986)
+..+++..+.+.+. ..+..+++|+.|++++|.++.. + .+. .++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~-~l~---------------------------------~l~ 63 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-Q-GIQ---------------------------------YLP 63 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC-T-TGG---------------------------------GCT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcccc-c-ccc---------------------------------cCC
Confidence 34455666666543 3356789999999999998752 1 122 245
Q ss_pred CccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCcccc-ccccccceeeccCC
Q 001983 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRN 245 (986)
Q Consensus 169 sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~l-~~~L~sL~~L~Ls~ 245 (986)
+|++|++++|.++.++ .+..+++|++|+|++|.++.++ .+..+++|+.|+|++|.++.+++. +..+++|+.|+|++
T Consensus 64 ~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 64 NVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp TCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC
Confidence 8999999999999875 7889999999999999999986 489999999999999999998764 56689999999999
Q ss_pred CccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 246 N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
|.|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|++...+ ...+..++.|+.+.|.+|++.
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVP---DGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCBC
T ss_pred CccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccC---HHHHhCCcCCCEEEccCCCcc
Confidence 9999985 47899999999999999999875 56789999999999999998654 345677899999999999998
Q ss_pred hhH
Q 001983 324 TRE 326 (986)
Q Consensus 324 ~~e 326 (986)
+..
T Consensus 219 ~~~ 221 (272)
T 3rfs_A 219 CTC 221 (272)
T ss_dssp CCT
T ss_pred ccC
Confidence 654
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=7e-17 Score=192.45 Aligned_cols=182 Identities=19% Similarity=0.237 Sum_probs=122.5
Q ss_pred CCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCC
Q 001983 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (986)
Q Consensus 87 ~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~ 166 (986)
.+|+.|+|++|.+++ +|..+ +++|++|+|++|.|+. +| ..
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~--------------------------------- 98 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---EL--------------------------------- 98 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CC---------------------------------
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cc---------------------------------
Confidence 489999999999987 66655 3899999999999985 44 11
Q ss_pred CCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCC
Q 001983 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 246 (986)
Q Consensus 167 L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N 246 (986)
+++|++|+|++|.|+.+|. +.. +|+.|+|++|.|+.+|. .+++|+.|+|++|.|+.++. .+++|+.|+|++|
T Consensus 99 l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN 170 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred cCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC
Confidence 2356777777777777666 443 67777777777777665 56677777777777776665 3466777777777
Q ss_pred ccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCC-------cEEEecCCCCCCCcccchHHhhhcCCCceeecCC
Q 001983 247 ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYL-------LNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (986)
Q Consensus 247 ~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L-------~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~Ldg 319 (986)
+|+.+|.+. ++|+.|+|++|.|+.+|. +.. +| +.|+|++|.|+..+ .. +..++.++.++|++
T Consensus 171 ~L~~lp~l~--~~L~~L~Ls~N~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp---~~-l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 171 QLTFLPELP--ESLEALDVSTNLLESLPA---VPV--RNHHSEETEIFFRCRENRITHIP---EN-ILSLDPTCTIILED 239 (571)
T ss_dssp CCSCCCCCC--TTCCEEECCSSCCSSCCC---CC----------CCEEEECCSSCCCCCC---GG-GGGSCTTEEEECCS
T ss_pred CCCCcchhh--CCCCEEECcCCCCCchhh---HHH--hhhcccccceEEecCCCcceecC---HH-HhcCCCCCEEEeeC
Confidence 777766543 677777777777776663 222 45 77777777776443 12 23366677777777
Q ss_pred CccChhHH
Q 001983 320 KEISTREL 327 (986)
Q Consensus 320 N~Is~~e~ 327 (986)
|++++...
T Consensus 240 N~l~~~~p 247 (571)
T 3cvr_A 240 NPLSSRIR 247 (571)
T ss_dssp SSCCHHHH
T ss_pred CcCCCcCH
Confidence 77766443
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=3.8e-17 Score=181.77 Aligned_cols=230 Identities=14% Similarity=0.043 Sum_probs=173.3
Q ss_pred CCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccch-hhHHhhhhhhhhhh-ccCCCccch
Q 001983 74 RALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKII-CHNSTNALR 151 (986)
Q Consensus 74 ~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp-~~L~~L~~LL~LLL-~~N~L~~L~ 151 (986)
+.+..+|..+ .++|++|+|++|+|+.+.+.+|.++++|++|+|++|.+.+.+| ..|.+++++++++. ..|++..++
T Consensus 19 ~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 19 SKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 3466677644 4689999999999997777789999999999999999876554 45677777666544 446666664
Q ss_pred hhcccccccccCCCCCCCccEEEccCCccccchh-hhcCCCCCCEEECCC-CCCCCCC--CcCCc-CCCCeecCCCCCcC
Q 001983 152 HVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKC-VNLKHLDLGFNNLR 226 (986)
Q Consensus 152 ~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~-N~Ls~L~--~L~~L-~~L~~LdLS~N~Ls 226 (986)
...+ ..+++|++|++++|+|..+|. .+.....+..|++.+ |.+..++ .|..+ ..|+.|+|++|+|+
T Consensus 97 ~~~f---------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 97 PEAF---------QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp TTSB---------CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred chhh---------hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 4322 256799999999999998876 455667788898865 6787765 46665 46899999999999
Q ss_pred CccccccccccceeeccC-CCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCC-CCCCcccc
Q 001983 227 SIAAFSEVSCHIVKLVLR-NNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNP-LCCSRWYR 302 (986)
Q Consensus 227 ~L~~l~~~L~sL~~L~Ls-~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~Np-Lt~~~~~r 302 (986)
.++.......+|+.|++. +|.++.++ .|..+++|+.|+|++|+|+.+|. ..+.+|+.|.+.++. +...+
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~----~~~~~L~~L~~l~~~~l~~lP--- 240 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS----YGLENLKKLRARSTYNLKKLP--- 240 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS----SSCTTCCEEECTTCTTCCCCC---
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh----hhhccchHhhhccCCCcCcCC---
Confidence 998866666789999997 57898885 58999999999999999999984 345667777765543 44333
Q ss_pred hHHhhhcCCCceeecCCCccCh
Q 001983 303 AQVFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 303 ~~~~~~l~~L~lL~LdgN~Is~ 324 (986)
.+..++.|+.+.+. ++..|
T Consensus 241 --~l~~l~~L~~l~l~-~~~~c 259 (350)
T 4ay9_X 241 --TLEKLVALMEASLT-YPSHC 259 (350)
T ss_dssp --CTTTCCSCCEEECS-CHHHH
T ss_pred --CchhCcChhhCcCC-CCccc
Confidence 24567888888875 34443
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1e-17 Score=179.80 Aligned_cols=171 Identities=21% Similarity=0.203 Sum_probs=117.9
Q ss_pred CCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCC
Q 001983 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSP 165 (986)
Q Consensus 86 L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~ 165 (986)
+.+|..++|..|.+.+.. .+..+++|+.|+|++|.++. ++ .+.
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~--------------------------------- 60 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQ--------------------------------- 60 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGG---------------------------------
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHh---------------------------------
Confidence 334445556666665332 45566677777777776654 22 121
Q ss_pred CCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCC
Q 001983 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRN 245 (986)
Q Consensus 166 ~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~ 245 (986)
.+++|+.|++++|+|+.+|. +..+++|+.|+|++|+++.++.+.. ++|+.|+|++|.|+.++. ...+++|+.|+|++
T Consensus 61 ~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRN 137 (263)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTT
T ss_pred hCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChh-hcCcccccEEECCC
Confidence 13367777777777776665 6777777777777777777765555 777777777777777654 34467788888888
Q ss_pred CccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 001983 246 NALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (986)
Q Consensus 246 N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~ 299 (986)
|+|+.++.+..+++|+.|+|++|.|+++ ..+..+++|+.|++++|++++.+
T Consensus 138 N~i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 138 NKLKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp SCCCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CcCCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccCCc
Confidence 8887777777888888888888888876 34677888888888888887664
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=1e-17 Score=187.06 Aligned_cols=212 Identities=18% Similarity=0.162 Sum_probs=158.7
Q ss_pred HHhcCCC-CCcEEEccCCCCCCCCCcCCCCC-----CCccEEEeeCCCCCccchhhHHhh-----hhhhhhhhccCCCcc
Q 001983 81 RILKLLT-SLKVVSALPPPARDPTPLSLLPF-----CRLKVLELRGCDLSTSAAKGLLEL-----RHTLEKIICHNSTNA 149 (986)
Q Consensus 81 ~~L~~L~-nLk~L~Ls~N~Ls~~lP~sf~~L-----~nL~~LdLS~N~Lt~~lp~~L~~L-----~~LL~LLL~~N~L~~ 149 (986)
..+..++ +|++|+|++|.+.+..+..|..+ ++|++|+|++|.+++..+..+... +.+..+.+.+|.+..
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 6677787 78888888888877766666654 888888888888877666655554 566666677776554
Q ss_pred chhhcc-cccccccCCCC-CCCccEEEccCCccc-----cchhhhcCCC-CCCEEECCCCCCCCCC------CcCCc-CC
Q 001983 150 LRHVFA-SRIVEIKDSPQ-WNRLSFVSCSCNRLV-----IMDESLQLLP-AVETLDLSRNKFAKVD------NLRKC-VN 214 (986)
Q Consensus 150 L~~l~~-~~l~~L~~l~~-L~sL~~LdLS~N~Lt-----~LP~sL~~L~-~L~~LdLS~N~Ls~L~------~L~~L-~~ 214 (986)
...... ..+ .. .++|++|+|++|.|+ .++..+..++ +|+.|+|++|+|+... .+..+ ++
T Consensus 124 ~~~~~l~~~l------~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~ 197 (362)
T 3goz_A 124 KSSSEFKQAF------SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197 (362)
T ss_dssp SCHHHHHHHH------TTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHH------HhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCC
Confidence 433211 111 12 248999999999999 5666677776 9999999999998653 34455 59
Q ss_pred CCeecCCCCCcCC-----ccccccc-cccceeeccCCCccCCcc------cCCCCCCCCEEEccCCCCCCCchh------
Q 001983 215 LKHLDLGFNNLRS-----IAAFSEV-SCHIVKLVLRNNALTTLR------GIENLKSLEGLDISYNIISTFSEL------ 276 (986)
Q Consensus 215 L~~LdLS~N~Ls~-----L~~l~~~-L~sL~~L~Ls~N~Ls~L~------~L~~L~sL~~LdLS~N~Ls~lp~l------ 276 (986)
|+.|+|++|.|+. ++..... .++|+.|+|++|.|+..+ .+..+++|+.|+|++|.+..+...
T Consensus 198 L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~ 277 (362)
T 3goz_A 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred CCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence 9999999999987 4443333 458999999999998852 468889999999999997766531
Q ss_pred hhhcCCCCCcEEEecCCCCCCC
Q 001983 277 EFLASLPYLLNLWLEGNPLCCS 298 (986)
Q Consensus 277 ~~L~~L~~L~~L~Ls~NpLt~~ 298 (986)
..+..+++|+.|++++|++...
T Consensus 278 ~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 278 AAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTSTTCCEEEEECTTSCBCCGG
T ss_pred HHhccCCceEEEecCCCcCCCc
Confidence 2456788999999999999755
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=1.6e-16 Score=172.86 Aligned_cols=186 Identities=22% Similarity=0.235 Sum_probs=158.6
Q ss_pred EEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCcc
Q 001983 92 VSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLS 171 (986)
Q Consensus 92 L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~ 171 (986)
+.+..+.+.+.. .+..+++|+.|++++|.++.. + .+. .+++|+
T Consensus 29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~---------------------------------~l~~L~ 71 (291)
T 1h6t_A 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQ---------------------------------YLPNVT 71 (291)
T ss_dssp HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGG---------------------------------GCTTCC
T ss_pred HHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHh---------------------------------cCCCCC
Confidence 345555555432 345789999999999998763 2 122 245899
Q ss_pred EEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCc
Q 001983 172 FVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL 251 (986)
Q Consensus 172 ~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L 251 (986)
.|++++|+++.++. +..+++|+.|+|++|.++.++.+..+++|+.|+|++|.|+.++. ...+++|+.|+|++|.|+.+
T Consensus 72 ~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~-l~~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 72 KLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDI 149 (291)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred EEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChh-hcCCCCCCEEEccCCcCCcc
Confidence 99999999998877 99999999999999999999999999999999999999999864 44579999999999999999
Q ss_pred ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccCh
Q 001983 252 RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 252 ~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~ 324 (986)
+.+..+++|+.|+|++|.|+.+++ +..+++|+.|+|++|.++..+ .+..++.|+.+.|.+|++..
T Consensus 150 ~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~-----~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR-----ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG-----GGTTCTTCSEEEEEEEEEEC
T ss_pred hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCCh-----hhccCCCCCEEECcCCcccC
Confidence 999999999999999999999874 889999999999999998653 26778999999999999864
No 95
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=5.5e-19 Score=210.35 Aligned_cols=198 Identities=20% Similarity=0.194 Sum_probs=146.5
Q ss_pred CCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCC-Cccch---------hhcccccccccCCCCCCCccEEE---
Q 001983 108 LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALR---------HVFASRIVEIKDSPQWNRLSFVS--- 174 (986)
Q Consensus 108 ~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~-L~~L~---------~l~~~~l~~L~~l~~L~sL~~Ld--- 174 (986)
..+++|+.|+|++|.|+ .+|..+..+++|..+.+.+|. +..++ +..+..+. .+++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~------~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ------YFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH------HHHHHHHHCGGG
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH------HHHhcccCcchh
Confidence 45666777777777765 356666666665555543221 00000 00111111 123444444
Q ss_pred -----------ccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeecc
Q 001983 175 -----------CSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (986)
Q Consensus 175 -----------LS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~L 243 (986)
+++|.|+.+|. ..|+.|+|++|.|+.+|.+..+++|+.|+|++|.|+.+|..+..+++|+.|+|
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred hcccchhhhhhhhcccccccCc-----cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEEC
Confidence 34444444433 25899999999999999899999999999999999999888888999999999
Q ss_pred CCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeec
Q 001983 244 RNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKV 317 (986)
Q Consensus 244 s~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~L 317 (986)
++|+|+.+|.+..+++|+.|+|++|.|++++.+..+..+++|+.|+|++|+|+..+......+..++.|+.|++
T Consensus 494 s~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 494 SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999999999999999999999841267899999999999999999887777777777888887753
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=3.4e-17 Score=179.02 Aligned_cols=213 Identities=16% Similarity=0.148 Sum_probs=125.2
Q ss_pred cccCCCCCCchhhHHHhcCC--CCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCcc-chhhHHhhhhhhhhhhc
Q 001983 67 VSDLGDHRALEQLRRILKLL--TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTS-AAKGLLELRHTLEKIIC 143 (986)
Q Consensus 67 vLdLs~~~~L~~Lp~~L~~L--~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~-lp~~L~~L~~LL~LLL~ 143 (986)
.+|++++... +..+..+ ++|+.|++.+|.+.+..+. +..+++|++|+|++|.+++. ++..+..++++..+.+.
T Consensus 51 ~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 51 TLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp EEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred eeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 4566665433 4556666 8999999999999877665 56789999999999998765 56666666655555555
Q ss_pred cCCCccchhhcccccccccCCCCCCCccEEEccCC-ccc--cchhhhcCCCCCCEEECCCC-CCCC--CC-CcCCcC-CC
Q 001983 144 HNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN-RLV--IMDESLQLLPAVETLDLSRN-KFAK--VD-NLRKCV-NL 215 (986)
Q Consensus 144 ~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N-~Lt--~LP~sL~~L~~L~~LdLS~N-~Ls~--L~-~L~~L~-~L 215 (986)
+|.+... .+..+ ..+++|++|++++| .++ .++..+..+++|+.|++++| .++. ++ .+..++ +|
T Consensus 127 ~~~l~~~---~~~~l------~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 127 GLRLSDP---IVNTL------AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp TCBCCHH---HHHHH------TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CcccCHH---HHHHH------hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 5432211 11111 12456666666666 455 35555556666666666666 5553 22 345555 66
Q ss_pred CeecCCCCC--cC--CccccccccccceeeccCCCc-cCC--cccCCCCCCCCEEEccCCC-CCCCchhhhhcCCCCCcE
Q 001983 216 KHLDLGFNN--LR--SIAAFSEVSCHIVKLVLRNNA-LTT--LRGIENLKSLEGLDISYNI-ISTFSELEFLASLPYLLN 287 (986)
Q Consensus 216 ~~LdLS~N~--Ls--~L~~l~~~L~sL~~L~Ls~N~-Ls~--L~~L~~L~sL~~LdLS~N~-Ls~lp~l~~L~~L~~L~~ 287 (986)
+.|+|++|. ++ .++.....+++|+.|+|++|. ++. ++.+..+++|+.|+|++|. +... .+..+..+++|+.
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~ 276 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE-TLLELGEIPTLKT 276 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG-GGGGGGGCTTCCE
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH-HHHHHhcCCCCCE
Confidence 666666663 32 234444445666666666665 433 2455566666666666663 2221 1124555666666
Q ss_pred EEecCC
Q 001983 288 LWLEGN 293 (986)
Q Consensus 288 L~Ls~N 293 (986)
|++++|
T Consensus 277 L~l~~~ 282 (336)
T 2ast_B 277 LQVFGI 282 (336)
T ss_dssp EECTTS
T ss_pred EeccCc
Confidence 666666
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=1.2e-16 Score=178.79 Aligned_cols=176 Identities=26% Similarity=0.274 Sum_probs=112.6
Q ss_pred cEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCC
Q 001983 90 KVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNR 169 (986)
Q Consensus 90 k~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~s 169 (986)
+.++++++.+.. +|..+. +.|+.|+|++|.|++..+..+. ..+++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~--------------------------------~~l~~ 65 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTP--------------------------------TRLTN 65 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSS--------------------------------SCCTT
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhh--------------------------------hcccc
Confidence 456666666653 444332 3567777777777653332221 02346
Q ss_pred ccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCC
Q 001983 170 LSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (986)
Q Consensus 170 L~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~ 245 (986)
|+.|+|++|+|+.++. .|..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++
T Consensus 66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 7777777777776653 5667777777777777777654 46667777777777777776643 444566777777777
Q ss_pred CccCCcc--cC---CCCCCCCEEEccCCCCCCCchhhhhcCCCC--CcEEEecCCCCCCCccc
Q 001983 246 NALTTLR--GI---ENLKSLEGLDISYNIISTFSELEFLASLPY--LLNLWLEGNPLCCSRWY 301 (986)
Q Consensus 246 N~Ls~L~--~L---~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~--L~~L~Ls~NpLt~~~~~ 301 (986)
|+|+.++ .+ ..+++|+.|+|++|.|+.++. ..+..++. |+.|+|++|||.|+|.+
T Consensus 146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-HHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-HHhhhccHhhcceEEecCCCccCCcCc
Confidence 7777664 22 567888888888888888764 55666665 37788888888888743
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=6.6e-16 Score=162.09 Aligned_cols=155 Identities=23% Similarity=0.306 Sum_probs=119.3
Q ss_pred CCccEEEccCCccccc-hhhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCcccc-ccccccceeecc
Q 001983 168 NRLSFVSCSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVL 243 (986)
Q Consensus 168 ~sL~~LdLS~N~Lt~L-P~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~l-~~~L~sL~~L~L 243 (986)
++|++|+|++|.|+.+ |..|..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|+|+.+++. +..+++|+.|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 4788999999998866 557888899999999999998875 478889999999999999888763 456788999999
Q ss_pred CCCccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHH--hhhcCCCceeecCCC
Q 001983 244 RNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQV--FSYFAHPAKLKVDGK 320 (986)
Q Consensus 244 s~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~--~~~l~~L~lL~LdgN 320 (986)
++|+|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.|...... +..-.......++|+
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~ 198 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGK 198 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSS
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCc
Confidence 999998885 77888899999999999988875 56788889999999999998887411111 111123345566776
Q ss_pred ccC
Q 001983 321 EIS 323 (986)
Q Consensus 321 ~Is 323 (986)
++.
T Consensus 199 ~v~ 201 (229)
T 3e6j_A 199 AVN 201 (229)
T ss_dssp EEE
T ss_pred ccC
Confidence 654
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=4.2e-16 Score=186.95 Aligned_cols=165 Identities=21% Similarity=0.249 Sum_probs=142.6
Q ss_pred cCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCc
Q 001983 69 DLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTN 148 (986)
Q Consensus 69 dLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~ 148 (986)
++.++. +..++ .+..|++|+.|+|++|.+.+..| |..+++|+.|+|++|.|++ +| .+
T Consensus 49 ~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l----------------- 105 (605)
T 1m9s_A 49 IANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SL----------------- 105 (605)
T ss_dssp BCTTCC-CCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TS-----------------
T ss_pred ECcCCC-CCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hh-----------------
Confidence 344333 33444 47889999999999999997665 8999999999999999976 22 11
Q ss_pred cchhhcccccccccCCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCc
Q 001983 149 ALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSI 228 (986)
Q Consensus 149 ~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L 228 (986)
..+++|+.|+|++|.|..++ .+..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.+
T Consensus 106 ----------------~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 106 ----------------KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp ----------------TTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCC
T ss_pred ----------------ccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCc
Confidence 23568999999999999874 5889999999999999999999999999999999999999998
Q ss_pred cccccccccceeeccCCCccCCcccCCCCCCCCEEEccCCCCCCCc
Q 001983 229 AAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFS 274 (986)
Q Consensus 229 ~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp 274 (986)
++ +..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.+...|
T Consensus 169 ~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 169 VP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp GG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECCC
T ss_pred hh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCCc
Confidence 87 5667999999999999999999999999999999999998876
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=5.7e-16 Score=166.25 Aligned_cols=170 Identities=19% Similarity=0.298 Sum_probs=145.6
Q ss_pred hhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCc
Q 001983 133 ELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKC 212 (986)
Q Consensus 133 ~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L 212 (986)
.+..+..+.+..|.+..+.. +..+++|+.|++++|.|+.+| .+..+++|+.|+|++|+|+.++.+..+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~-----------~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVS-----------QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDL 84 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEEC-----------HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTC
T ss_pred HHHHHHHHHhcCCCcccccc-----------hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccC
Confidence 34445555566665554441 123568999999999999997 788999999999999999999889999
Q ss_pred CCCCeecCCCCCcCCccccccccccceeeccCCCccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecC
Q 001983 213 VNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEG 292 (986)
Q Consensus 213 ~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~ 292 (986)
++|+.|+|++|+|+.++.... ++|+.|+|++|+|+.++.+..+++|+.|+|++|.|++++ .+..+++|+.|+|++
T Consensus 85 ~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 85 TKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHG 159 (263)
T ss_dssp SSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTT
T ss_pred CCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCC
Confidence 999999999999999887655 899999999999999999999999999999999999985 478899999999999
Q ss_pred CCCCCCcccchHHhhhcCCCceeecCCCccCh
Q 001983 293 NPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 293 NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~ 324 (986)
|++... ..+..++.|+.++|.+|++.+
T Consensus 160 N~i~~~-----~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 160 NEITNT-----GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp SCCCBC-----TTSTTCCCCCEEEEEEEEEEC
T ss_pred CcCcch-----HHhccCCCCCEEeCCCCcccC
Confidence 999865 346678899999999999874
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=1.2e-15 Score=159.23 Aligned_cols=131 Identities=20% Similarity=0.305 Sum_probs=82.7
Q ss_pred CccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCC--CCcCCcCCCCeecCCCCCcCCcccc-ccccccceeeccC
Q 001983 169 RLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLR 244 (986)
Q Consensus 169 sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L--~~L~~L~~L~~LdLS~N~Ls~L~~l-~~~L~sL~~L~Ls 244 (986)
+|+.|++++|+|+.+|. .|..+++|+.|+|++|+|+.+ ..|..+++|+.|+|++|.|+.++.. +..+++|+.|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 56666666666665554 566666666666666666665 2566666666666666666666542 3445666666666
Q ss_pred CCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001983 245 NNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (986)
Q Consensus 245 ~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~ 300 (986)
+|+|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|+|.|+|.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcCCCCc
Confidence 66666652 56666666666666666666653 445666666666666666666653
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=1.2e-15 Score=159.20 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=136.7
Q ss_pred cEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCcc-ccccccccceeeccCCCc
Q 001983 171 SFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNA 247 (986)
Q Consensus 171 ~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~-~l~~~L~sL~~L~Ls~N~ 247 (986)
+.+++++|.++.+|..+. ++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+. ..+..+++|+.|+|++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 679999999999998664 78999999999999875 7899999999999999999884 466678999999999999
Q ss_pred cCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChh
Q 001983 248 LTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (986)
Q Consensus 248 Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~ 325 (986)
|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.|+..+ ...+..++.++.+.|.+|++.|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIA---KGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCEECS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEEC---HHHHhCCCCCCEEEeCCCCcCCC
Confidence 99986 47899999999999999999865 67899999999999999998664 34567788999999999999988
Q ss_pred HHHHHHH
Q 001983 326 ELWERQL 332 (986)
Q Consensus 326 e~~~~~~ 332 (986)
+...+..
T Consensus 168 c~l~~l~ 174 (220)
T 2v9t_B 168 CHLKWLA 174 (220)
T ss_dssp GGGHHHH
T ss_pred CccHHHH
Confidence 7655443
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.62 E-value=2.3e-15 Score=179.44 Aligned_cols=162 Identities=23% Similarity=0.252 Sum_probs=132.3
Q ss_pred CccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccchhhhcCCC
Q 001983 112 RLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLP 191 (986)
Q Consensus 112 nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~ 191 (986)
+|+.|+|++|.|++ +|..+ +++|+.|+|++|.|+.+| ..++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l-----------------------------------~~~L~~L~Ls~N~l~~ip---~~l~ 100 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL-----------------------------------PPQITVLEITQNALISLP---ELPA 100 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC-----------------------------------CTTCSEEECCSSCCSCCC---CCCT
T ss_pred CccEEEeCCCCCCc-cCHhH-----------------------------------cCCCCEEECcCCCCcccc---cccC
Confidence 89999999999876 44321 137999999999999998 5689
Q ss_pred CCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcccCCCCCCCCEEEccCCCCC
Q 001983 192 AVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIIS 271 (986)
Q Consensus 192 ~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls 271 (986)
+|+.|+|++|.|+.+|.+.. +|+.|+|++|.|++++. .+++|+.|+|++|.|+.++. .+++|+.|+|++|.|+
T Consensus 101 ~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 101 SLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp TCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS
T ss_pred CCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCC
Confidence 99999999999999887544 99999999999999887 56899999999999999886 6889999999999999
Q ss_pred CCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccCh
Q 001983 272 TFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 272 ~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~ 324 (986)
.+|. +. ++|+.|+|++|.|+..+.+....+...+.++.++|++|.++.
T Consensus 174 ~lp~---l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~ 221 (571)
T 3cvr_A 174 FLPE---LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH 221 (571)
T ss_dssp CCCC---CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCC
T ss_pred Ccch---hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCccee
Confidence 9884 44 899999999999996654211111112223999999999984
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=1e-15 Score=156.37 Aligned_cols=124 Identities=15% Similarity=0.232 Sum_probs=71.3
Q ss_pred CccEEEccCCccccchhhhcCCCCCCEEECCCCCCCC--CCCcCCcCCCCeecCCCCCcCC-ccccccccccceeeccCC
Q 001983 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAK--VDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVLRN 245 (986)
Q Consensus 169 sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~--L~~L~~L~~L~~LdLS~N~Ls~-L~~l~~~L~sL~~L~Ls~ 245 (986)
+|++|++++|.++.++ .+..+++|++|++++|.++. ++.+..+++|+.|+|++|.++. .+..+..+++|+.|+|++
T Consensus 67 ~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 145 (197)
T 4ezg_A 67 NIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145 (197)
T ss_dssp TCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCS
T ss_pred CCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccC
Confidence 4455555555444432 44455555555555555554 3355555666666666666554 223334456666666666
Q ss_pred Cc-cCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCC
Q 001983 246 NA-LTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (986)
Q Consensus 246 N~-Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt 296 (986)
|. ++.++.+..+++|+.|+|++|.|++++ .+..+++|+.|++++|+|.
T Consensus 146 n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 146 NGAITDIMPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CTBCCCCGGGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC---
T ss_pred CCCccccHhhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcccC
Confidence 65 666666666777777777777777654 3566677777777777764
No 105
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=5e-16 Score=169.79 Aligned_cols=200 Identities=17% Similarity=0.158 Sum_probs=127.5
Q ss_pred CCCCCcEEEccCCCCCCC-CCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccC-CCcc--chhhccccccc
Q 001983 85 LLTSLKVVSALPPPARDP-TPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN-STNA--LRHVFASRIVE 160 (986)
Q Consensus 85 ~L~nLk~L~Ls~N~Ls~~-lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N-~L~~--L~~l~~~~l~~ 160 (986)
.+++|++|+|++|.+.+. +|..+..+++|++|+|++|.+++..+..+..++++..+.+.+| .+.. ++..+
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~------ 164 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL------ 164 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH------
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH------
Confidence 445555555555554432 3444445555555555555555444444444444444444444 2221 11111
Q ss_pred ccCCCCCCCccEEEccCC-cccc--chhhhcCCC-CCCEEECCCC--CCCC--CC-CcCCcCCCCeecCCCCC-cCC-cc
Q 001983 161 IKDSPQWNRLSFVSCSCN-RLVI--MDESLQLLP-AVETLDLSRN--KFAK--VD-NLRKCVNLKHLDLGFNN-LRS-IA 229 (986)
Q Consensus 161 L~~l~~L~sL~~LdLS~N-~Lt~--LP~sL~~L~-~L~~LdLS~N--~Ls~--L~-~L~~L~~L~~LdLS~N~-Ls~-L~ 229 (986)
..+++|++|++++| .++. ++..+..++ +|+.|+|++| .++. ++ .+..+++|+.|+|++|. ++. .+
T Consensus 165 ----~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 165 ----SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp ----HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred ----hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH
Confidence 12468999999999 9984 677888999 9999999999 4542 33 56788999999999998 553 34
Q ss_pred ccccccccceeeccCCCc-cCC--cccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 001983 230 AFSEVSCHIVKLVLRNNA-LTT--LRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (986)
Q Consensus 230 ~l~~~L~sL~~L~Ls~N~-Ls~--L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~ 298 (986)
.....+++|+.|+|++|. +.. +..+..+++|+.|+|++| ++... +..+. ..|..|++++|.++..
T Consensus 241 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~-~~~l~--~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 241 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT-LQLLK--EALPHLQINCSHFTTI 308 (336)
T ss_dssp GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC-HHHHH--HHSTTSEESCCCSCCT
T ss_pred HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHH-HHHHH--hhCcceEEecccCccc
Confidence 455567999999999995 433 236788999999999999 55422 22232 2355566899999855
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=5.6e-16 Score=172.35 Aligned_cols=235 Identities=14% Similarity=0.099 Sum_probs=176.6
Q ss_pred eEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHH-HhcCCCCCcEEEccCCCCCCCCC-cC
Q 001983 29 IVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRR-ILKLLTSLKVVSALPPPARDPTP-LS 106 (986)
Q Consensus 29 ~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~-~L~~L~nLk~L~Ls~N~Ls~~lP-~s 106 (986)
++++.+.+.|..+|..+. ++++ .++|++|+ +..+|. .|.++++|++|+|++|.+.+.+| .+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~--------------~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAI--------------ELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCS--------------EEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTS
T ss_pred CEEEecCCCCCccCcCcC--CCCC--------------EEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhH
Confidence 456777888888887552 2222 34556554 556765 68999999999999999876554 57
Q ss_pred CCCCCCccE-EEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccC-Cccccch
Q 001983 107 LLPFCRLKV-LELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSC-NRLVIMD 184 (986)
Q Consensus 107 f~~L~nL~~-LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~-N~Lt~LP 184 (986)
|.++++|.. +.+.+|+|+...|..|..++++..+.+.+|.+..++...+. ...++..|++.. |++..+|
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~---------~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI---------HSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC---------CBSSCEEEEEESCTTCCEEC
T ss_pred hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhc---------ccchhhhhhhcccccccccc
Confidence 889988775 66778999998888899999888888888887766543221 234677888865 6788887
Q ss_pred h-hhcCCC-CCCEEECCCCCCCCCC-CcCCcCCCCeecCC-CCCcCCccc-cccccccceeeccCCCccCCcccCCCCCC
Q 001983 185 E-SLQLLP-AVETLDLSRNKFAKVD-NLRKCVNLKHLDLG-FNNLRSIAA-FSEVSCHIVKLVLRNNALTTLRGIENLKS 259 (986)
Q Consensus 185 ~-sL~~L~-~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS-~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~s 259 (986)
. .|..+. .++.|+|++|+|+.++ ......+|+.|+++ +|.++.++. .+..+++|+.|+|++|+|+.+|. ..+.+
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~ 224 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLEN 224 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTT
T ss_pred ccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhcc
Confidence 6 456654 6889999999999886 55566789999997 478999986 45678999999999999999873 33566
Q ss_pred CCEEEccC-CCCCCCchhhhhcCCCCCcEEEecCC
Q 001983 260 LEGLDISY-NIISTFSELEFLASLPYLLNLWLEGN 293 (986)
Q Consensus 260 L~~LdLS~-N~Ls~lp~l~~L~~L~~L~~L~Ls~N 293 (986)
|+.|.+.+ +.++.+|. +..+++|+.+++.++
T Consensus 225 L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPT---LEKLVALMEASLTYP 256 (350)
T ss_dssp CCEEECTTCTTCCCCCC---TTTCCSCCEEECSCH
T ss_pred chHhhhccCCCcCcCCC---chhCcChhhCcCCCC
Confidence 77776554 46777764 678999999999643
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.61 E-value=2.7e-15 Score=167.75 Aligned_cols=158 Identities=23% Similarity=0.247 Sum_probs=134.6
Q ss_pred CccEEEccCCccccchhh-hc-CCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-cccccccceeecc
Q 001983 169 RLSFVSCSCNRLVIMDES-LQ-LLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVL 243 (986)
Q Consensus 169 sL~~LdLS~N~Lt~LP~s-L~-~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~L 243 (986)
.++.|+|++|+|+.++.. +. .+++|+.|+|++|+|+.++ .|..+++|+.|+|++|+|+.+++ .+..+++|+.|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 588999999999988764 55 8999999999999999875 69999999999999999999876 4566899999999
Q ss_pred CCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhh---cCCCCCcEEEecCCCCCCCcccchHHhhhcCC--Cceee
Q 001983 244 RNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFL---ASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH--PAKLK 316 (986)
Q Consensus 244 s~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L---~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~--L~lL~ 316 (986)
++|+|+.++ .|..+++|+.|+|++|.|+.++. ..+ ..+++|+.|+|++|+|...+ ...+..++. ++.+.
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~---~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLP---LTDLQKLPAWVKNGLY 195 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCC---HHHHHHSCHHHHTTEE
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccC---HHHhhhccHhhcceEE
Confidence 999999973 78999999999999999999985 444 57999999999999998654 345555655 37799
Q ss_pred cCCCccChhHHHHH
Q 001983 317 VDGKEISTRELWER 330 (986)
Q Consensus 317 LdgN~Is~~e~~~~ 330 (986)
|++|++.|++...+
T Consensus 196 l~~N~~~C~C~l~~ 209 (361)
T 2xot_A 196 LHNNPLECDCKLYQ 209 (361)
T ss_dssp CCSSCEECCHHHHH
T ss_pred ecCCCccCCcCcHH
Confidence 99999999886543
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=156.15 Aligned_cols=129 Identities=21% Similarity=0.319 Sum_probs=64.4
Q ss_pred ccEEEccCCccccchh--hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccC
Q 001983 170 LSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLR 244 (986)
Q Consensus 170 L~~LdLS~N~Lt~LP~--sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls 244 (986)
++.|+|++|+|+.++. .|..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 4455555555554421 2445555555555555555443 35555555555555555555443 23334555555555
Q ss_pred CCccCCc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 001983 245 NNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (986)
Q Consensus 245 ~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~ 299 (986)
+|+|+.+ ..+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|+|.|+|
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCCEECSG
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcCCcCCC
Confidence 5555554 134455555555555555555432 34445555555555555555554
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=2.9e-15 Score=156.44 Aligned_cols=156 Identities=19% Similarity=0.245 Sum_probs=135.6
Q ss_pred ccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCC---CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCC
Q 001983 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (986)
Q Consensus 170 L~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~---~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~ 245 (986)
.+.+++++|.++.+|..+ .+.++.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++
T Consensus 13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 368999999999999865 346799999999999873 48899999999999999999886 566789999999999
Q ss_pred CccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 246 N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
|.|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.|+... ...+..++.++.++|.+|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVA---PGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBC---TTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEEC---HHHhcCCCCCCEEEecCcCCc
Confidence 9999985 58999999999999999999865 67889999999999999998653 355778899999999999999
Q ss_pred hhHHHHHH
Q 001983 324 TRELWERQ 331 (986)
Q Consensus 324 ~~e~~~~~ 331 (986)
|.+...+.
T Consensus 167 c~c~l~~l 174 (220)
T 2v70_A 167 CNCYLAWL 174 (220)
T ss_dssp CSGGGHHH
T ss_pred CCCchHHH
Confidence 88765543
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=2e-15 Score=154.33 Aligned_cols=149 Identities=17% Similarity=0.202 Sum_probs=130.0
Q ss_pred CCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCC-ccccccccccceeeccCC
Q 001983 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVLRN 245 (986)
Q Consensus 167 L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~-L~~l~~~L~sL~~L~Ls~ 245 (986)
+++|+.|++++|.++.+| .+..+++|+.|++++|.++.++.+..+++|+.|+|++|.++. .+..+..+++|+.|+|++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 458999999999999998 789999999999999999999899999999999999999997 445566689999999999
Q ss_pred CccCC--cccCCCCCCCCEEEccCCC-CCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCcc
Q 001983 246 NALTT--LRGIENLKSLEGLDISYNI-ISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 322 (986)
Q Consensus 246 N~Ls~--L~~L~~L~sL~~LdLS~N~-Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~I 322 (986)
|.++. +..+..+++|+.|+|++|. ++.++ .+..+++|+.|++++|+++..+ .+..++.|+.+++.+|+|
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~-----~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR-----GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT-----TGGGCSSCCEEEECBC--
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH-----HhccCCCCCEEEeeCccc
Confidence 99998 4578999999999999998 88875 4788999999999999998643 466789999999999998
Q ss_pred Ch
Q 001983 323 ST 324 (986)
Q Consensus 323 s~ 324 (986)
..
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 63
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=2.6e-15 Score=154.10 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=85.3
Q ss_pred CCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCC
Q 001983 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSP 165 (986)
Q Consensus 86 L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~ 165 (986)
.++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------------------------------- 73 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN--------------------------------- 73 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT---------------------------------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC---------------------------------
Confidence 34667777777776665555666667777777777766653322221
Q ss_pred CCCCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCcccc-ccccccceee
Q 001983 166 QWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKL 241 (986)
Q Consensus 166 ~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~l-~~~L~sL~~L 241 (986)
.+++|++|++++|.|+.+|. .+..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.|+.++.. +..+++|+.|
T Consensus 74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence 23356666666666665554 3456666666666666666654 255566666666666666655542 3334555555
Q ss_pred ccCCCccCCcccCCCCCCCCEEEccCCCCCC
Q 001983 242 VLRNNALTTLRGIENLKSLEGLDISYNIIST 272 (986)
Q Consensus 242 ~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~ 272 (986)
+|++|.+. ..+++|+.|+++.|.+++
T Consensus 154 ~l~~N~~~-----~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 154 WLHDNPWD-----CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp ECCSCCBC-----CCTTTTHHHHHHHHHCTT
T ss_pred EecCCCee-----cCCCCHHHHHHHHHhCCc
Confidence 55555432 234455555555555553
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=9e-15 Score=153.44 Aligned_cols=151 Identities=22% Similarity=0.256 Sum_probs=133.8
Q ss_pred CccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCC
Q 001983 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (986)
Q Consensus 169 sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~ 245 (986)
..+.++++++.++.+|..+ .++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.++. .+..+++|+.|+|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4678999999999999865 389999999999999974 68999999999999999999886 446689999999999
Q ss_pred CccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 246 N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
|+|+.++ .+..+++|+.|+|++|.|+.+| ..+..+++|+.|+|++|.|...+ ...+..++.++.+.|.+|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELP--RGIERLTHLTHLALDQNQLKSIP---HGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCC--TTGGGCTTCSEEECCSSCCCCCC---TTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccC--cccccCCCCCEEECCCCcCCccC---HHHHhCCCCCCEEEeeCCCcc
Confidence 9999985 4789999999999999999987 56789999999999999998654 355777899999999999999
Q ss_pred hhH
Q 001983 324 TRE 326 (986)
Q Consensus 324 ~~e 326 (986)
|.+
T Consensus 173 c~c 175 (229)
T 3e6j_A 173 CEC 175 (229)
T ss_dssp TTB
T ss_pred CCc
Confidence 875
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=3e-17 Score=195.43 Aligned_cols=200 Identities=17% Similarity=0.102 Sum_probs=155.6
Q ss_pred cCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCC-------------CCccchhhHHhhhhhhhhh-hccCCCcc
Q 001983 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-------------LSTSAAKGLLELRHTLEKI-ICHNSTNA 149 (986)
Q Consensus 84 ~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~-------------Lt~~lp~~L~~L~~LL~LL-L~~N~L~~ 149 (986)
..+++|+.|+|++|.+. .+|..++.+++|+.|++++|. +.+..|..+..++++..+. +..|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 44667777777777765 556677777777777775553 5566777888888777665 55555444
Q ss_pred chhhccc--ccccccCCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCC-CcCCcCCCCeecCCCCCcC
Q 001983 150 LRHVFAS--RIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLR 226 (986)
Q Consensus 150 L~~l~~~--~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS~N~Ls 226 (986)
++..... .+..+. ...|+.|+|++|.|+.+|. +..+++|+.|+|++|.|+.+| .+..+++|+.|+|++|.|+
T Consensus 425 L~~l~l~~n~i~~l~----~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 425 LRSKFLLENSVLKME----YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHHHH----HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhhhhcccccccC----ccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC
Confidence 5443221 222222 1258999999999999987 999999999999999999987 7999999999999999999
Q ss_pred CccccccccccceeeccCCCccCCc--c-cCCCCCCCCEEEccCCCCCCCchh--hhhcCCCCCcEEEe
Q 001983 227 SIAAFSEVSCHIVKLVLRNNALTTL--R-GIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWL 290 (986)
Q Consensus 227 ~L~~l~~~L~sL~~L~Ls~N~Ls~L--~-~L~~L~sL~~LdLS~N~Ls~lp~l--~~L~~L~~L~~L~L 290 (986)
++| .+..+++|+.|+|++|+|+.+ | .+..+++|+.|+|++|.|+.+++. ..+..+|+|+.|++
T Consensus 500 ~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 998 566689999999999999997 4 789999999999999999987642 23445899999875
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=1.4e-14 Score=148.63 Aligned_cols=131 Identities=23% Similarity=0.369 Sum_probs=109.5
Q ss_pred CCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCcccc-ccccccceeecc
Q 001983 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVL 243 (986)
Q Consensus 168 ~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~l-~~~L~sL~~L~L 243 (986)
++|++|++++|+++.+|. .+..+++|++|+|++|+|+.++ .|..+++|++|+|++|.|+.+++. +..+++|+.|+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 478899999999987776 4678899999999999998876 378889999999999999888763 456788999999
Q ss_pred CCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 001983 244 RNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (986)
Q Consensus 244 s~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~ 299 (986)
++|+|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.+.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCCCT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCCeecCC
Confidence 999998875 37888999999999999988875 55788899999999999988765
No 115
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=3.8e-14 Score=145.30 Aligned_cols=129 Identities=27% Similarity=0.358 Sum_probs=114.0
Q ss_pred ccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCC-CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCc
Q 001983 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNA 247 (986)
Q Consensus 170 L~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~ 247 (986)
-+.+++++|.|+.+|..+ .++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|+
T Consensus 12 ~~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 368999999999998765 368999999999999886 78899999999999999999875 46668999999999999
Q ss_pred cCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 001983 248 LTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (986)
Q Consensus 248 Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~ 301 (986)
|+.++ .|..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|+|.|+|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECSGGG
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecCCcC
Confidence 99985 68999999999999999999875 5688899999999999999999853
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=2.4e-16 Score=161.26 Aligned_cols=162 Identities=31% Similarity=0.405 Sum_probs=139.3
Q ss_pred CccEEEccCC--ccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCC
Q 001983 169 RLSFVSCSCN--RLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 246 (986)
Q Consensus 169 sL~~LdLS~N--~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N 246 (986)
.|+.+.+.++ .++.+|..+..+++|++|+|++|.|+.++.+..+++|+.|+|++|.|+.++.....+++|+.|+|++|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 4666666654 67788889999999999999999999999999999999999999999999887777799999999999
Q ss_pred ccCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC-------cccchHHhhhcCCCceeecCC
Q 001983 247 ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS-------RWYRAQVFSYFAHPAKLKVDG 319 (986)
Q Consensus 247 ~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~-------~~~r~~~~~~l~~L~lL~Ldg 319 (986)
+|+.++.+..+++|+.|+|++|.|+.++.+..+..+++|+.|++++|++.+. ..++...+..++.++. ||+
T Consensus 104 ~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~--Ld~ 181 (198)
T 1ds9_A 104 QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK--LDG 181 (198)
T ss_dssp ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE--ECC
T ss_pred cCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE--ECC
Confidence 9999988889999999999999999987666789999999999999999765 3344555777777665 569
Q ss_pred CccChhHHHHHHH
Q 001983 320 KEISTRELWERQL 332 (986)
Q Consensus 320 N~Is~~e~~~~~~ 332 (986)
++++..++..+.+
T Consensus 182 ~~i~~~e~~~a~~ 194 (198)
T 1ds9_A 182 MPVDVDEREQANV 194 (198)
T ss_dssp GGGTTTTTTHHHH
T ss_pred cccCHHHHHHHHh
Confidence 9999888776643
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.50 E-value=6e-14 Score=143.27 Aligned_cols=129 Identities=25% Similarity=0.311 Sum_probs=114.2
Q ss_pred ccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCC---CcCCcCCCCeecCCCCCcCCcc-ccccccccceeeccCC
Q 001983 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRN 245 (986)
Q Consensus 170 L~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~---~L~~L~~L~~LdLS~N~Ls~L~-~l~~~L~sL~~L~Ls~ 245 (986)
.+.+++++|+|+.+|..+.. +|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+++. ..+..+++|+.|+|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 37899999999999986643 8999999999999885 2889999999999999999985 4666789999999999
Q ss_pred CccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 001983 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (986)
Q Consensus 246 N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~ 301 (986)
|+|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|+|.|++.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9999974 58899999999999999998754 6788999999999999999999753
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=3.1e-14 Score=141.17 Aligned_cols=133 Identities=19% Similarity=0.165 Sum_probs=116.6
Q ss_pred CCCccEEEccCCccc--cchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCC-ccccccccccceeecc
Q 001983 167 WNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVL 243 (986)
Q Consensus 167 L~sL~~LdLS~N~Lt--~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~-L~~l~~~L~sL~~L~L 243 (986)
.++|+.|++++|.++ .+|..+..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.++. ++.....+++|+.|+|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 468999999999999 8998889999999999999999998889999999999999999998 5556666899999999
Q ss_pred CCCccCCc---ccCCCCCCCCEEEccCCCCCCCchh--hhhcCCCCCcEEEecCCCCCCCc
Q 001983 244 RNNALTTL---RGIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLEGNPLCCSR 299 (986)
Q Consensus 244 s~N~Ls~L---~~L~~L~sL~~LdLS~N~Ls~lp~l--~~L~~L~~L~~L~Ls~NpLt~~~ 299 (986)
++|.|+.+ ..+..+++|+.|+|++|.|+.++.. ..+..+++|+.|++++|++...+
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 99999986 3688899999999999999988741 36788999999999999887543
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=1.2e-14 Score=170.94 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=102.7
Q ss_pred CCCccEEEcc-----------CCccc--cchhhhcCCCCCCEEECCCCCCCCC--CCcCC-cCCCCeecCC----CCCcC
Q 001983 167 WNRLSFVSCS-----------CNRLV--IMDESLQLLPAVETLDLSRNKFAKV--DNLRK-CVNLKHLDLG----FNNLR 226 (986)
Q Consensus 167 L~sL~~LdLS-----------~N~Lt--~LP~sL~~L~~L~~LdLS~N~Ls~L--~~L~~-L~~L~~LdLS----~N~Ls 226 (986)
+++|+.|+++ .|.++ .++..+..+++|+.|+++.|.++.. ..+.. +++|+.|+|+ .|.++
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 4567777777 35555 2333345577788888877777652 23443 6778888885 56777
Q ss_pred Cc------cccccccccceeeccCCCc--cCCc--ccC-CCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCC
Q 001983 227 SI------AAFSEVSCHIVKLVLRNNA--LTTL--RGI-ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295 (986)
Q Consensus 227 ~L------~~l~~~L~sL~~L~Ls~N~--Ls~L--~~L-~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpL 295 (986)
.. +.....+++|+.|+|+.|. ++.. ..+ ..+++|+.|+|++|.+++......+..+++|+.|+|++|++
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 53 2334456788888886543 4442 222 34788888888888887643334567888899999999887
Q ss_pred CCCcccchHHhhhcCCCceeecCCCccChh
Q 001983 296 CCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (986)
Q Consensus 296 t~~~~~r~~~~~~l~~L~lL~LdgN~Is~~ 325 (986)
+... .......++.|+.+.|.+|+++..
T Consensus 501 ~~~~--~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 501 SERA--IAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp BHHH--HHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cHHH--HHHHHHhcCccCeeECcCCcCCHH
Confidence 4321 123345678888888888888754
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=1.8e-14 Score=176.20 Aligned_cols=191 Identities=14% Similarity=0.064 Sum_probs=108.4
Q ss_pred eEEEecCCCcccchhhhhccccchhcccCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCC
Q 001983 29 IVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLL 108 (986)
Q Consensus 29 ~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~ 108 (986)
..|.+..+.+..++..+-...+|..+.+ ..+++..+ .+...+..+..+++|+.|+|++|.+. .+|..+.
T Consensus 176 ~~l~L~~n~~~~~~~~~l~~l~Ls~~~i---------~~~~~~~n-~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~ 244 (727)
T 4b8c_D 176 PKIELFANGKDEANQALLQHKKLSQYSI---------DEDDDIEN-RMVMPKDSKYDDQLWHALDLSNLQIF-NISANIF 244 (727)
T ss_dssp --------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG
T ss_pred ceEEeeCCCCCcchhhHhhcCccCcccc---------cCcccccc-ceecChhhhccCCCCcEEECCCCCCC-CCChhhc
Confidence 4555656666555544433333332221 12233333 23345667888888888888888887 5666667
Q ss_pred CCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccchhhhc
Q 001983 109 PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQ 188 (986)
Q Consensus 109 ~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~sL~ 188 (986)
.+++|++|+|++|.|+ .+|..|..+ ++|++|+|++|.|+.+|..|.
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l---------------------------------~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNL---------------------------------SNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGG---------------------------------TTCCEEECTTSCCSSCCSSGG
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCC---------------------------------CCCCEEeCcCCcCCccChhhc
Confidence 8888888888888887 466555444 379999999999999999999
Q ss_pred CCCCCCEEECCCCCCCCCC-CcCCcCCCCeecCCCCCcCCccc-ccccc-ccceeeccCCCccCCcccCCCCCCCCEEEc
Q 001983 189 LLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVS-CHIVKLVLRNNALTTLRGIENLKSLEGLDI 265 (986)
Q Consensus 189 ~L~~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L-~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdL 265 (986)
.+++|++|+|++|.|+.+| .|..+++|+.|+|++|.|++.++ .+..+ ..+..|+|++|.++.. -...|+.|++
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~----~p~~l~~l~l 366 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP----LPHERRFIEI 366 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCC------
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc----CccccceeEe
Confidence 9999999999999999987 79999999999999999997654 22221 2234578999988763 2346777888
Q ss_pred cCC
Q 001983 266 SYN 268 (986)
Q Consensus 266 S~N 268 (986)
+.|
T Consensus 367 ~~n 369 (727)
T 4b8c_D 367 NTD 369 (727)
T ss_dssp ---
T ss_pred ecc
Confidence 877
No 121
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.48 E-value=1.2e-14 Score=170.84 Aligned_cols=285 Identities=12% Similarity=0.096 Sum_probs=181.8
Q ss_pred cCCeEEEecCCCcccchhhhhccccchhcccCCCcc-------------ccccccccCCCCCCchhhHHHhcCCCCCcEE
Q 001983 26 EGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLD-------------YLRAYVSDLGDHRALEQLRRILKLLTSLKVV 92 (986)
Q Consensus 26 ~~l~~L~L~~~~L~~Lp~~L~~L~~Le~L~l~~~l~-------------~l~l~vLdLs~~~~L~~Lp~~L~~L~nLk~L 92 (986)
..++.|++..+.+..+|..+..+++|+.+....... ...+..+++.++ ....+|..+..+++|++|
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEE
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEE
Confidence 456677777777777776666666666665531100 001122333332 234567777788888888
Q ss_pred EccCCCCCCCCC-cCCCCCCCccEEEeeCCCCCc-cchhhHHhhhhhhhhhhcc-----------CCCccchhhcccccc
Q 001983 93 SALPPPARDPTP-LSLLPFCRLKVLELRGCDLST-SAAKGLLELRHTLEKIICH-----------NSTNALRHVFASRIV 159 (986)
Q Consensus 93 ~Ls~N~Ls~~lP-~sf~~L~nL~~LdLS~N~Lt~-~lp~~L~~L~~LL~LLL~~-----------N~L~~L~~l~~~~l~ 159 (986)
+|++|.+.+... ..+..+++|+.|+|+ +.+.. .++..+..++++..+.+.+ |.+.... +.
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~------~~ 371 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG------LI 371 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH------HH
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH------HH
Confidence 888888654332 335778888888888 44433 2333334455555555552 2221110 00
Q ss_pred cccCCCCCCCccEEEccCCccc-cchhhhcC-CCCCCEEECC----CCCCCCCC-------CcCCcCCCCeecCCCCC--
Q 001983 160 EIKDSPQWNRLSFVSCSCNRLV-IMDESLQL-LPAVETLDLS----RNKFAKVD-------NLRKCVNLKHLDLGFNN-- 224 (986)
Q Consensus 160 ~L~~l~~L~sL~~LdLS~N~Lt-~LP~sL~~-L~~L~~LdLS----~N~Ls~L~-------~L~~L~~L~~LdLS~N~-- 224 (986)
.+ ...+++|++|+++.|.++ ..+..+.. +++|+.|+++ .|.++..+ .+..+++|+.|+|++|.
T Consensus 372 ~l--~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~ 449 (592)
T 3ogk_B 372 AL--AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG 449 (592)
T ss_dssp HH--HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGG
T ss_pred HH--HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCC
Confidence 00 013679999999999998 33344544 8999999996 77888642 25668999999998643
Q ss_pred cCC--ccccccccccceeeccCCCccCCc--c-cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 001983 225 LRS--IAAFSEVSCHIVKLVLRNNALTTL--R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (986)
Q Consensus 225 Ls~--L~~l~~~L~sL~~L~Ls~N~Ls~L--~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~ 299 (986)
++. +......+++|+.|+|++|.++.. + .+..+++|+.|+|++|.|+.......+..+++|+.|+|++|+++...
T Consensus 450 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 450 LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp CCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred ccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence 543 223344578999999999999873 3 45788999999999999865432244567999999999999998653
Q ss_pred ccchHHhhhcCCCceeecCCCcc
Q 001983 300 WYRAQVFSYFAHPAKLKVDGKEI 322 (986)
Q Consensus 300 ~~r~~~~~~l~~L~lL~LdgN~I 322 (986)
. ......++.+....++.++.
T Consensus 530 ~--~~l~~~~p~l~~~~~~~~~~ 550 (592)
T 3ogk_B 530 Q--DLMQMARPYWNIELIPSRRV 550 (592)
T ss_dssp T--TGGGGCCTTEEEEEECCC--
T ss_pred H--HHHHHhCCCcEEEEecCccc
Confidence 1 12233566677777766543
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=6.2e-14 Score=140.63 Aligned_cols=134 Identities=22% Similarity=0.290 Sum_probs=78.8
Q ss_pred CCCCCCEEECCCCCCCCCCCcCCcC-CCCeecCCCCCcCCccccccccccceeeccCCCccCCcc-c-CCCCCCCCEEEc
Q 001983 189 LLPAVETLDLSRNKFAKVDNLRKCV-NLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR-G-IENLKSLEGLDI 265 (986)
Q Consensus 189 ~L~~L~~LdLS~N~Ls~L~~L~~L~-~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~-~-L~~L~sL~~LdL 265 (986)
.+++|+.|++++|.++.++.+..+. +|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+.++ . +..+++|+.|+|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 3444444444444444444443333 455555555555444 22233455555555555555543 2 356677777777
Q ss_pred cCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 266 SYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 266 S~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
++|.|+.++.+..+..+++|+.|++++|+++..+.++...+..++.++.+++.+|.+.
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777665446677777777777777777666555556677777777777666654
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=8.7e-14 Score=135.26 Aligned_cols=125 Identities=19% Similarity=0.241 Sum_probs=102.8
Q ss_pred CCccEEEccCCccc--cchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCC-ccccccccccceeeccC
Q 001983 168 NRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVLR 244 (986)
Q Consensus 168 ~sL~~LdLS~N~Lt--~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~-L~~l~~~L~sL~~L~Ls 244 (986)
++|+.|++++|.++ .+|..+..+++|+.|++++|.++.++.+..+++|+.|+|++|.++. ++.....+++|+.|+|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 57999999999998 8888889999999999999999988888899999999999999988 66665557888888888
Q ss_pred CCccCCc---ccCCCCCCCCEEEccCCCCCCCchh--hhhcCCCCCcEEEecC
Q 001983 245 NNALTTL---RGIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLEG 292 (986)
Q Consensus 245 ~N~Ls~L---~~L~~L~sL~~LdLS~N~Ls~lp~l--~~L~~L~~L~~L~Ls~ 292 (986)
+|.|+.+ ..+..+++|+.|++++|.++.++.. ..+..+++|+.|++++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888875 4677788888888888888877642 3567778888877653
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.44 E-value=5.3e-13 Score=133.58 Aligned_cols=129 Identities=22% Similarity=0.360 Sum_probs=112.8
Q ss_pred CccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCcccc-ccccccceeeccCC
Q 001983 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRN 245 (986)
Q Consensus 169 sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~l-~~~L~sL~~L~Ls~ 245 (986)
..+.+++++|+++.+|..+ .++|+.|++++|+++.++ .+..+++|+.|+|++|.|+.+++. +..+++|+.|+|++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3578999999999998654 478999999999999876 478999999999999999998864 46689999999999
Q ss_pred CccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001983 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (986)
Q Consensus 246 N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~ 300 (986)
|+|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeeccCc
Confidence 9999985 47889999999999999999875 557889999999999999998863
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=1.7e-13 Score=137.38 Aligned_cols=131 Identities=21% Similarity=0.204 Sum_probs=114.5
Q ss_pred CCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCcccc-ccccccceeeccC
Q 001983 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLR 244 (986)
Q Consensus 166 ~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l-~~~L~sL~~L~Ls 244 (986)
.+.+|+.|++++|.++.+|......++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.+++. +..+++|+.|+|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 466899999999999988654444459999999999999999999999999999999999998864 3678999999999
Q ss_pred CCccCCcc---cCCCCCCCCEEEccCCCCCCCchh--hhhcCCCCCcEEEecCCCCC
Q 001983 245 NNALTTLR---GIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLEGNPLC 296 (986)
Q Consensus 245 ~N~Ls~L~---~L~~L~sL~~LdLS~N~Ls~lp~l--~~L~~L~~L~~L~Ls~NpLt 296 (986)
+|.|+.++ .+..+++|+.|+|++|.++.++.. ..+..+++|+.|++++|++.
T Consensus 97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999875 588999999999999999988741 14789999999999999875
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=9.8e-13 Score=134.79 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=124.3
Q ss_pred CEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCCcc--cCCCCCCCCEEEccCCCCC
Q 001983 194 ETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIIS 271 (986)
Q Consensus 194 ~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls 271 (986)
+.+++++|.|+.+|.- -.++|+.|+|++|.|+.++..+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 6799999999998731 136899999999999999887778899999999999999985 6999999999999999999
Q ss_pred CCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChhHHHHHHHHHHhh-cCCCCCCCccCCC
Q 001983 272 TFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLIIARR-QKRPAGFGFYSPA 350 (986)
Q Consensus 272 ~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~~~~~~l~~~~-~~~p~~~~~~~P~ 350 (986)
.+++ ..+..+++|+.|+|++|.|+..+ ...|..++.++.+.|.+|++.|.+...+...+... ...+....|..|.
T Consensus 92 ~i~~-~~f~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~ 167 (193)
T 2wfh_A 92 CIPP-RTFDGLKSLRLLSLHGNDISVVP---EGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPG 167 (193)
T ss_dssp BCCT-TTTTTCTTCCEEECCSSCCCBCC---TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESG
T ss_pred EeCH-HHhCCCCCCCEEECCCCCCCeeC---hhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCch
Confidence 9875 67899999999999999998554 35577789999999999999987755443333222 2223344555555
Q ss_pred CCC
Q 001983 351 KGN 353 (986)
Q Consensus 351 ~~~ 353 (986)
...
T Consensus 168 ~l~ 170 (193)
T 2wfh_A 168 EMA 170 (193)
T ss_dssp GGT
T ss_pred HHC
Confidence 443
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=2.8e-13 Score=134.28 Aligned_cols=135 Identities=28% Similarity=0.213 Sum_probs=118.8
Q ss_pred cCCCCCCEEECCCCCCC--CCC-CcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCC-cc-cCCCCCCCCE
Q 001983 188 QLLPAVETLDLSRNKFA--KVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEG 262 (986)
Q Consensus 188 ~~L~~L~~LdLS~N~Ls--~L~-~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~-L~-~L~~L~sL~~ 262 (986)
...++|+.|++++|.++ .++ .+..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+. ++ .+..+++|+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 44688999999999998 676 568999999999999999998 555668999999999999999 55 4456999999
Q ss_pred EEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccC
Q 001983 263 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (986)
Q Consensus 263 LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is 323 (986)
|+|++|.|+.++.+..+..+++|+.|++++|+++..+.++...+..++.++.+++.+|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999999999876678899999999999999999887666678889999999999999875
No 128
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.40 E-value=5.6e-14 Score=164.99 Aligned_cols=206 Identities=15% Similarity=0.066 Sum_probs=122.3
Q ss_pred CCCCccEEEeeCCCCCccchhh-HHhhhhhhhhhhccCCCccchhhcccccccccCCCCCCCccEEEc---------cCC
Q 001983 109 PFCRLKVLELRGCDLSTSAAKG-LLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSC---------SCN 178 (986)
Q Consensus 109 ~L~nL~~LdLS~N~Lt~~lp~~-L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdL---------S~N 178 (986)
.+++|++|+|++|.+++..+.. +..++++..+.+.+| +. .. .+..+. ..+++|+.|++ ..+
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~---~~---~l~~l~--~~~~~L~~L~L~~~~~~g~~~~~ 357 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE---DA---GLEVLA--STCKDLRELRVFPSEPFVMEPNV 357 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH---HH---HHHHHH--HHCTTCCEEEEECSCTTCSSCSS
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC---HH---HHHHHH--HhCCCCCEEEEecCcccccccCC
Confidence 3466777777777665432222 234444333333333 11 00 000000 12457778877 334
Q ss_pred cccc--chhhhcCCCCCCEEECCCCCCCCC--CCcC-CcCCCCeecCC--C----CCcCCcc------ccccccccceee
Q 001983 179 RLVI--MDESLQLLPAVETLDLSRNKFAKV--DNLR-KCVNLKHLDLG--F----NNLRSIA------AFSEVSCHIVKL 241 (986)
Q Consensus 179 ~Lt~--LP~sL~~L~~L~~LdLS~N~Ls~L--~~L~-~L~~L~~LdLS--~----N~Ls~L~------~l~~~L~sL~~L 241 (986)
.++. +......+++|+.|.+..|.++.. ..+. .+++|+.|+|+ + |.++..+ .....+++|+.|
T Consensus 358 ~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L 437 (594)
T 2p1m_B 358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEE
T ss_pred CCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEE
Confidence 5552 212223477888888877777653 2333 47888888888 4 5666332 234456789999
Q ss_pred ccCCCccCCc--ccCCC-CCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecC
Q 001983 242 VLRNNALTTL--RGIEN-LKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVD 318 (986)
Q Consensus 242 ~Ls~N~Ls~L--~~L~~-L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~Ld 318 (986)
+|++ .++.. +.+.. +++|+.|+|++|.+++.........+++|+.|+|++|+++... .......++.|+.+.|.
T Consensus 438 ~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~--~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 438 SLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA--LLANASKLETMRSLWMS 514 (594)
T ss_dssp ECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH--HHHTGGGGGGSSEEEEE
T ss_pred eecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH--HHHHHHhCCCCCEEeee
Confidence 9976 55542 33433 7889999999999876433222367899999999999984221 11233457889999999
Q ss_pred CCccChhH
Q 001983 319 GKEISTRE 326 (986)
Q Consensus 319 gN~Is~~e 326 (986)
+|+++...
T Consensus 515 ~~~~~~~~ 522 (594)
T 2p1m_B 515 SCSVSFGA 522 (594)
T ss_dssp SSCCBHHH
T ss_pred CCCCCHHH
Confidence 99986543
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=7.5e-13 Score=128.60 Aligned_cols=129 Identities=26% Similarity=0.190 Sum_probs=111.7
Q ss_pred CCCCCCEEECCCCCCC--CCC-CcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCC-cc-cCCCCCCCCEE
Q 001983 189 LLPAVETLDLSRNKFA--KVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGL 263 (986)
Q Consensus 189 ~L~~L~~LdLS~N~Ls--~L~-~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~-L~-~L~~L~sL~~L 263 (986)
..++|+.|++++|.++ .++ .+..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+. ++ .+..+++|+.|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4578999999999998 566 668999999999999999998 555667999999999999999 65 45569999999
Q ss_pred EccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecC
Q 001983 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVD 318 (986)
Q Consensus 264 dLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~Ld 318 (986)
+|++|.|+.++....+..+++|+.|++++|+++..+.++...+..++.|+.+++.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999999997655778999999999999999998776666778889999888764
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=4.4e-12 Score=129.42 Aligned_cols=132 Identities=21% Similarity=0.274 Sum_probs=113.6
Q ss_pred CEEECCCCCCCCCCC-cCCcCCCCeecCCCCCcCCccc--cccccccceeeccCCCccCCc--ccCCCCCCCCEEEccCC
Q 001983 194 ETLDLSRNKFAKVDN-LRKCVNLKHLDLGFNNLRSIAA--FSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYN 268 (986)
Q Consensus 194 ~~LdLS~N~Ls~L~~-L~~L~~L~~LdLS~N~Ls~L~~--l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N 268 (986)
+.|++++|.++.+|. +. .+|+.|+|++|.|+.+++ .+..+++|+.|+|++|+|+.+ ..+..+++|+.|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 789999999999874 43 389999999999999886 366789999999999999997 37899999999999999
Q ss_pred CCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChhHHHHHH
Q 001983 269 IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQ 331 (986)
Q Consensus 269 ~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~~~~~ 331 (986)
.|+.+++ ..+..+++|+.|+|++|.|+... ...+..++.++.++|.+|++.+.....+.
T Consensus 89 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~c~c~l~~~ 147 (192)
T 1w8a_A 89 KIKEISN-KMFLGLHQLKTLNLYDNQISCVM---PGSFEHLNSLTSLNLASNPFNCNCHLAWF 147 (192)
T ss_dssp CCCEECS-SSSTTCTTCCEEECCSSCCCEEC---TTSSTTCTTCCEEECTTCCBCCSGGGHHH
T ss_pred cCCccCH-HHhcCCCCCCEEECCCCcCCeeC---HHHhhcCCCCCEEEeCCCCccCcCcchHH
Confidence 9999875 56889999999999999998542 35567788999999999999988754443
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=1.4e-12 Score=159.69 Aligned_cols=131 Identities=20% Similarity=0.170 Sum_probs=88.0
Q ss_pred CCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCC-CcCCcCCCCeecCCCCCcCCccccccccccceeeccC
Q 001983 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLR 244 (986)
Q Consensus 166 ~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~-~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls 244 (986)
.++.|+.|+|++|.|..+|..+..+++|+.|+|++|.|+.+| .|..+++|+.|+|++|.|+.+|..+..+++|+.|+|+
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECC
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECC
Confidence 345677777777777777776667777777777777777665 5777777777777777777776666666777777777
Q ss_pred CCccCCcc-cCCCCCCCCEEEccCCCCCCCchhhhhcCCC-CCcEEEecCCCCCC
Q 001983 245 NNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLP-YLLNLWLEGNPLCC 297 (986)
Q Consensus 245 ~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~-~L~~L~Ls~NpLt~ 297 (986)
+|.|+.+| .|..+++|+.|+|++|.|+..++ ..+..+. .+..|+|++|.++.
T Consensus 302 ~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 302 DNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL-KILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp SSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH-HHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCccChhhhcCCCccEEeCCCCccCCCCh-HHHhhcchhhhHHhhccCcccC
Confidence 77777765 56777777777777777776443 2222211 12235677777654
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=9e-15 Score=149.52 Aligned_cols=83 Identities=25% Similarity=0.324 Sum_probs=41.8
Q ss_pred CCCCeecCCCCCcCCccccccccccceeeccCCCccCCcc---cCCCCCCCCEEEccCCCCCCCch---------hhhhc
Q 001983 213 VNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR---GIENLKSLEGLDISYNIISTFSE---------LEFLA 280 (986)
Q Consensus 213 ~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~---~L~~L~sL~~LdLS~N~Ls~lp~---------l~~L~ 280 (986)
++|+.|+|++|.|+.++. ...+++|+.|+|++|.|+.++ .+..+++|+.|++++|.+...++ ...+.
T Consensus 93 ~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 93 DTLEELWISYNQIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HHCSEEEEEEEECCCHHH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred CcCCEEECcCCcCCcCCc-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 333444444444433331 222344444444445444432 35556666666666666654321 12356
Q ss_pred CCCCCcEEEecCCCCCCC
Q 001983 281 SLPYLLNLWLEGNPLCCS 298 (986)
Q Consensus 281 ~L~~L~~L~Ls~NpLt~~ 298 (986)
.+++|+.|+ +|+++..
T Consensus 172 ~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp HCSSCSEEC--CGGGTTT
T ss_pred hCCCcEEEC--CcccCHH
Confidence 677777775 7777654
No 133
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.31 E-value=2.9e-13 Score=158.88 Aligned_cols=235 Identities=13% Similarity=0.097 Sum_probs=153.0
Q ss_pred hhHHHhcCCCCCcEEEccCCCCCCCCC-cCCCCCCCccEEEeeCCCCCccchhhH-HhhhhhhhhhhccC------CCcc
Q 001983 78 QLRRILKLLTSLKVVSALPPPARDPTP-LSLLPFCRLKVLELRGCDLSTSAAKGL-LELRHTLEKIICHN------STNA 149 (986)
Q Consensus 78 ~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP-~sf~~L~nL~~LdLS~N~Lt~~lp~~L-~~L~~LL~LLL~~N------~L~~ 149 (986)
.++..+..+++|+.|+|++|.+.+... ..+..+++|+.|+|++| ++......+ ..++++..+.+... ....
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence 455555678999999999999764322 23568899999999998 543222222 23555444434210 0011
Q ss_pred chhhcccccccccCCCCCCCccEEEccCCccccc-hhhh-cCCCCCCEEECC--C----CCCCCCC-------CcCCcCC
Q 001983 150 LRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM-DESL-QLLPAVETLDLS--R----NKFAKVD-------NLRKCVN 214 (986)
Q Consensus 150 L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~L-P~sL-~~L~~L~~LdLS--~----N~Ls~L~-------~L~~L~~ 214 (986)
+...... .+. ..+++|+.|.+..|.++.. +..+ ..+++|+.|+|+ + |.++..+ .+..+++
T Consensus 359 l~~~~l~---~l~--~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 433 (594)
T 2p1m_B 359 LTEQGLV---SVS--MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433 (594)
T ss_dssp CCHHHHH---HHH--HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred CCHHHHH---HHH--HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence 1111100 010 1256899999999999832 2333 358999999999 4 6676443 1567899
Q ss_pred CCeecCCCCCcCCc--cccccccccceeeccCCCccCCc--ccC-CCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEE
Q 001983 215 LKHLDLGFNNLRSI--AAFSEVSCHIVKLVLRNNALTTL--RGI-ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLW 289 (986)
Q Consensus 215 L~~LdLS~N~Ls~L--~~l~~~L~sL~~L~Ls~N~Ls~L--~~L-~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~ 289 (986)
|+.|+|++ .++.. ..+...+++|+.|+|++|.++.. ..+ ..+++|+.|+|++|.++.......+..+++|+.|+
T Consensus 434 L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 434 LRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp CCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred ccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 99999987 55542 22333478999999999998763 333 66899999999999996543323456689999999
Q ss_pred ecCCCCCCCcccchHHhhhcCCCceeecCCCc
Q 001983 290 LEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (986)
Q Consensus 290 Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~ 321 (986)
+++|+++... .......++.++...+..+.
T Consensus 513 l~~~~~~~~~--~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 513 MSSCSVSFGA--CKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp EESSCCBHHH--HHHHHHHCTTEEEEEECSSS
T ss_pred eeCCCCCHHH--HHHHHHhCCCCEEEEecCCC
Confidence 9999994321 11222456777766666554
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=4.3e-12 Score=139.68 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=59.9
Q ss_pred cCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCcc--cCCCCCCCC-EEEccCCCCCCCchhhhhcCCCCCcE
Q 001983 212 CVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLE-GLDISYNIISTFSELEFLASLPYLLN 287 (986)
Q Consensus 212 L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~-~LdLS~N~Ls~lp~l~~L~~L~~L~~ 287 (986)
+++|+.|+|++|.++.++. .+..+.+|+.|.|.+| ++.++ +|..+++|+ .|+|.+ .++.++. .+|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~-~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF-GAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT-TTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch-hhhhCCccCCE
Confidence 5666666776666666665 3444566667766666 55553 566666676 666666 5555544 55666666777
Q ss_pred EEecCCCCCCCcccchHHhhhcCCCceee
Q 001983 288 LWLEGNPLCCSRWYRAQVFSYFAHPAKLK 316 (986)
Q Consensus 288 L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~ 316 (986)
|++.+|.+...+ ...|..++.|+.++
T Consensus 302 l~l~~n~i~~I~---~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLG---DELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEEC---TTTTCTTCCCCEEE
T ss_pred EEeCCCccCccc---hhhhcCCcchhhhc
Confidence 776666665332 34455555555543
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=5.7e-12 Score=138.68 Aligned_cols=201 Identities=13% Similarity=0.109 Sum_probs=139.3
Q ss_pred CCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccC----CCccchhhcccccccc
Q 001983 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN----STNALRHVFASRIVEI 161 (986)
Q Consensus 86 L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N----~L~~L~~l~~~~l~~L 161 (986)
+++|+.|+|.+ .++.+.+.+|.++++|+.|+|++|.+..+.+.+|.....+..+-...+ ....+....+.....+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 99999999988 888788889999999999999999998777777766544332221110 0011111111000000
Q ss_pred c-----------------CCCCCCCccEEEccCCccccchhhh-cCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCC
Q 001983 162 K-----------------DSPQWNRLSFVSCSCNRLVIMDESL-QLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLG 221 (986)
Q Consensus 162 ~-----------------~l~~L~sL~~LdLS~N~Lt~LP~sL-~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS 221 (986)
. ......+++.+.+.++-...-...+ ..+++|+.|+|++|+++.++ .|..+.+|+.|+|.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 0 0012234455555544222111111 23789999999999999886 79999999999999
Q ss_pred CCCcCCccc-cccccccce-eeccCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEe
Q 001983 222 FNNLRSIAA-FSEVSCHIV-KLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWL 290 (986)
Q Consensus 222 ~N~Ls~L~~-l~~~L~sL~-~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~L 290 (986)
.| ++.++. .+..+.+|+ .|.|.+ .++.++ +|.+|++|+.|+|+.|.++.++. ..|.++++|+.|+.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~-~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD-ELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT-TTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch-hhhcCCcchhhhcc
Confidence 98 888876 455678899 999988 788874 89999999999999999999876 77899999999874
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=9.6e-11 Score=117.11 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=111.5
Q ss_pred CCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCcc--cCCCCCCCCEEEccCCC
Q 001983 193 VETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNI 269 (986)
Q Consensus 193 L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~ 269 (986)
.+.+++++|.++.+|. ...++|+.|+|++|.++.+++ .+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 5789999999998872 234799999999999999876 3466899999999999999985 47899999999999999
Q ss_pred CCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChhHH
Q 001983 270 ISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (986)
Q Consensus 270 Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~ 327 (986)
|+.++. ..+..+++|+.|+|++|.++..+ ...+..++.++.++|.+|++.+...
T Consensus 88 l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPN-GVFDKLTQLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCH-HHhhCCcccCEEECcCCcceEeC---HHHhcCCcccCEEEecCCCeeccCc
Confidence 999875 56789999999999999998554 3456678899999999999998764
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=4.8e-11 Score=119.62 Aligned_cols=107 Identities=24% Similarity=0.374 Sum_probs=70.3
Q ss_pred ccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccC
Q 001983 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALT 249 (986)
Q Consensus 170 L~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls 249 (986)
.+.|++++|.|+.+|..+ .++|+.|+|++|.|+.++ +..+..+++|+.|+|++|+|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~---------------------~~~~~~l~~L~~L~Ls~N~l~ 67 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLE---------------------PGVFDRLTQLTRLDLDNNQLT 67 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCC---------------------TTTTTTCTTCSEEECCSSCCC
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccC---------------------hhhhcCcccCCEEECCCCCcC
Confidence 345666666666555443 244555555555555442 112333445555555555555
Q ss_pred Ccc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001983 250 TLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (986)
Q Consensus 250 ~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~ 300 (986)
.++ .|..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|+|.|.|.
T Consensus 68 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 68 VLPAGVFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccChhhccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCCCCCch
Confidence 543 35778889999999999998875 568899999999999999999974
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.17 E-value=8.9e-11 Score=118.37 Aligned_cols=106 Identities=22% Similarity=0.372 Sum_probs=70.1
Q ss_pred cEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCccCC
Q 001983 171 SFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT 250 (986)
Q Consensus 171 ~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~ 250 (986)
+.+++++|+|+.+|..+. ++|+.|+|++|+|+.++ +..+..+++|+.|+|++|+|+.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~---------------------~~~~~~l~~L~~L~Ls~N~l~~ 71 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLE---------------------PGVFDHLVNLQQLYFNSNKLTA 71 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCC---------------------TTTTTTCTTCCEEECCSSCCCC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccC---------------------HHHhcCCcCCCEEECCCCCCCc
Confidence 455666666665555432 44555555555555442 1123334555555555555555
Q ss_pred cc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 001983 251 LR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (986)
Q Consensus 251 L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~ 300 (986)
++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|+|.|.|.
T Consensus 72 i~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 72 IPTGVFDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred cChhHhCCcchhhEEECCCCccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence 53 35778889999999999998875 558889999999999999999874
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=3e-10 Score=113.80 Aligned_cols=102 Identities=21% Similarity=0.169 Sum_probs=72.9
Q ss_pred hhhccCCCccchhhcccccccccCCCCCCCccEEEccCCccccc-hhhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCC
Q 001983 140 KIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLK 216 (986)
Q Consensus 140 LLL~~N~L~~L~~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~L-P~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~ 216 (986)
+.+.+|.+..++..+ .++|++|+|++|+|+.+ |..|..+++|+.|+|++|+|+.++ .|..+++|+
T Consensus 14 l~~s~n~l~~ip~~~------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 14 VDCSGKSLASVPTGI------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp EECTTSCCSSCCSCC------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEeCCCCcCccCccC------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence 445566665555322 25899999999999987 557899999999999999998876 366777777
Q ss_pred eecCCCCCcCCccccccccccceeeccCCCccCCcccCCCCCCCCEEEccCCCCCCCc
Q 001983 217 HLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFS 274 (986)
Q Consensus 217 ~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp 274 (986)
.|+|++|+|+.+++. .+..+++|+.|+|++|.+....
T Consensus 82 ~L~L~~N~l~~~~~~---------------------~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 82 QLSLNDNQLKSIPRG---------------------AFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp EEECCSSCCCCCCTT---------------------TTTTCTTCCEEECCSSCBCTTB
T ss_pred EEECCCCccCEeCHH---------------------HhcCCCCCCEEEeCCCCCCCCc
Confidence 777777777665542 2445566667777777666543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=3.9e-10 Score=113.63 Aligned_cols=86 Identities=23% Similarity=0.244 Sum_probs=65.6
Q ss_pred CCccEEEccCCccccc-hhhhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccccccccccceeeccC
Q 001983 168 NRLSFVSCSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLR 244 (986)
Q Consensus 168 ~sL~~LdLS~N~Lt~L-P~sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls 244 (986)
++|+.|+|++|+|+.+ |..|..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|+|+.+++.
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~------------- 99 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG------------- 99 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------------
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHH-------------
Confidence 5899999999999977 457889999999999999998876 356777777777777776665432
Q ss_pred CCccCCcccCCCCCCCCEEEccCCCCCCCc
Q 001983 245 NNALTTLRGIENLKSLEGLDISYNIISTFS 274 (986)
Q Consensus 245 ~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~lp 274 (986)
.+..+++|+.|+|++|.+...+
T Consensus 100 --------~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 100 --------AFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp --------TTTTCTTCSEEECCSSCBCTTB
T ss_pred --------HhccccCCCEEEeCCCCccccc
Confidence 2455667777777777777654
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.06 E-value=3.7e-11 Score=135.76 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=99.4
Q ss_pred CCccEEEccCCcccc--chhhhcCCCCCCEEECCCCCCCCCC--C----c-CCcCCCCeecCCCCCcCCcc-----cccc
Q 001983 168 NRLSFVSCSCNRLVI--MDESLQLLPAVETLDLSRNKFAKVD--N----L-RKCVNLKHLDLGFNNLRSIA-----AFSE 233 (986)
Q Consensus 168 ~sL~~LdLS~N~Lt~--LP~sL~~L~~L~~LdLS~N~Ls~L~--~----L-~~L~~L~~LdLS~N~Ls~L~-----~l~~ 233 (986)
++|+.|+|++|.|+. +......+++|+.|+|++|.|+... . + ...++|+.|+|++|.|+... ....
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 478888888888862 2222234557888888888887531 2 2 34577888888888886522 2223
Q ss_pred ccccceeeccCCCccCCc------ccCCCCCCCCEEEccCCCCCCCchh---hhhcCCCCCcEEEecCCCCCCCcccchH
Q 001983 234 VSCHIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIISTFSEL---EFLASLPYLLNLWLEGNPLCCSRWYRAQ 304 (986)
Q Consensus 234 ~L~sL~~L~Ls~N~Ls~L------~~L~~L~sL~~LdLS~N~Ls~lp~l---~~L~~L~~L~~L~Ls~NpLt~~~~~r~~ 304 (986)
.+++|+.|+|++|.|+.. ..+..+++|+.|+|++|.|++.... ..+..+++|+.|+|++|+|+... ..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g---~~ 257 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG---RQ 257 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH---HH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH---HH
Confidence 457888888888888762 3567778899999999999864321 33456788999999999987543 22
Q ss_pred HhhhcCC-----Cceee--cCCCccChh
Q 001983 305 VFSYFAH-----PAKLK--VDGKEISTR 325 (986)
Q Consensus 305 ~~~~l~~-----L~lL~--LdgN~Is~~ 325 (986)
.+..+.. ++.+. ++++.++..
T Consensus 258 ~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 258 VLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 2322221 55555 666666543
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=3.2e-10 Score=125.06 Aligned_cols=106 Identities=25% Similarity=0.355 Sum_probs=69.1
Q ss_pred EEEccCC-ccccchhhhcCCCCCCEEECCC-CCCCCCC--CcCCcCCCCeecCCCCCcCCccccccccccceeeccCCCc
Q 001983 172 FVSCSCN-RLVIMDESLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNA 247 (986)
Q Consensus 172 ~LdLS~N-~Lt~LP~sL~~L~~L~~LdLS~-N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~ 247 (986)
.++++++ +|+.+|. +..+++|+.|+|++ |.|+.++ .|..+++|+.|+|++|+|+++++.
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---------------- 74 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD---------------- 74 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT----------------
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH----------------
Confidence 4566665 6666666 66666666666664 6665553 355555555555555555444321
Q ss_pred cCCcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 001983 248 LTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (986)
Q Consensus 248 Ls~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~ 301 (986)
.|..+++|+.|+|++|.|+.++. ..+..++ |+.|+|.+|+|.|+|.+
T Consensus 75 -----~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 75 -----AFHFTPRLSRLNLSFNALESLSW-KTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp -----GGGSCSCCCEEECCSSCCSCCCS-TTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred -----HhcCCcCCCEEeCCCCccceeCH-HHcccCC-ceEEEeeCCCccCCCcc
Confidence 35667788888888888888774 4455554 99999999999999854
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.01 E-value=2.4e-11 Score=137.28 Aligned_cols=178 Identities=21% Similarity=0.202 Sum_probs=121.6
Q ss_pred CCCCcEEEccCCCCCCCCCcCCC-----CCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhccccccc
Q 001983 86 LTSLKVVSALPPPARDPTPLSLL-----PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE 160 (986)
Q Consensus 86 L~nLk~L~Ls~N~Ls~~lP~sf~-----~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~ 160 (986)
+++|+.|+|++|.++......|. ..++|+.|+|++|.|+......+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------------------------- 124 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV-------------------------- 124 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHH--------------------------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHH--------------------------
Confidence 57899999999998754333332 23799999999999875333222211
Q ss_pred ccCCCCCCCccEEEccCCccccc-----hhhh-cCCCCCCEEECCCCCCCCC------CCcCCcCCCCeecCCCCCcCCc
Q 001983 161 IKDSPQWNRLSFVSCSCNRLVIM-----DESL-QLLPAVETLDLSRNKFAKV------DNLRKCVNLKHLDLGFNNLRSI 228 (986)
Q Consensus 161 L~~l~~L~sL~~LdLS~N~Lt~L-----P~sL-~~L~~L~~LdLS~N~Ls~L------~~L~~L~~L~~LdLS~N~Ls~L 228 (986)
+++|+.|+|++|.|+.. ...+ ...++|+.|+|++|.|+.. ..+..+++|++|+|++|.|+..
T Consensus 125 ------L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~ 198 (372)
T 3un9_A 125 ------FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE 198 (372)
T ss_dssp ------HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH
T ss_pred ------HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH
Confidence 12688999999998732 2233 3568899999999998752 2456788899999999998753
Q ss_pred c-----ccccccccceeeccCCCccCCc------ccCCCCCCCCEEEccCCCCCCCchhhhhcCC---CC--CcEEE--e
Q 001983 229 A-----AFSEVSCHIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIISTFSELEFLASL---PY--LLNLW--L 290 (986)
Q Consensus 229 ~-----~l~~~L~sL~~L~Ls~N~Ls~L------~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L---~~--L~~L~--L 290 (986)
. .....+++|+.|+|++|.|+.. ..+..+++|+.|+|++|.|+.... ..+..+ .. |+.+. +
T Consensus 199 g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~-~~L~~~~~~~~~~L~~l~~ll 277 (372)
T 3un9_A 199 GLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR-QVLRDLGGAAEGGARVVVSLT 277 (372)
T ss_dssp HHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHH-HHHHHCC------CEEECCCC
T ss_pred HHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHH-HHHHHHhcCCCccchhhHhhh
Confidence 2 2334457899999999999863 245677899999999999987543 333322 22 66666 6
Q ss_pred cCCCCC
Q 001983 291 EGNPLC 296 (986)
Q Consensus 291 s~NpLt 296 (986)
.+|.+.
T Consensus 278 ~~~~~~ 283 (372)
T 3un9_A 278 EGTAVS 283 (372)
T ss_dssp ----CH
T ss_pred cCCccC
Confidence 666664
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.99 E-value=1.1e-09 Score=124.94 Aligned_cols=224 Identities=11% Similarity=0.121 Sum_probs=149.8
Q ss_pred chhhHH-HhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhc
Q 001983 76 LEQLRR-ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVF 154 (986)
Q Consensus 76 L~~Lp~-~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~ 154 (986)
+..++. .|.+ .+|+.+.|.. .+....+.+|.++++|+.++|.+|.++......|. ...+..+.+ .+++..+....
T Consensus 146 i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l-p~~l~~I~~~a 221 (401)
T 4fdw_A 146 LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL-PVTLKEIGSQA 221 (401)
T ss_dssp CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC-CTTCCEECTTT
T ss_pred ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe-CCchheehhhH
Confidence 444443 4555 3688888864 67767778888889999999988888876555554 333222222 23333333322
Q ss_pred ccccccccCCCCCCCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcC-----
Q 001983 155 ASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLR----- 226 (986)
Q Consensus 155 ~~~l~~L~~l~~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls----- 226 (986)
+..+++|+.+.+..| ++.++. +|.. .+|+.+.| .+.++.++ .|..+++|+.|.+.+|.+.
T Consensus 222 ---------F~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 222 ---------FLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp ---------TTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred ---------hhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence 235678888888864 676665 4555 78888888 45566664 7888889999988887765
Q ss_pred Cccc-cccccccceeeccCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccch
Q 001983 227 SIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRA 303 (986)
Q Consensus 227 ~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~ 303 (986)
.++. .+..+++|+.+.|. +.++.++ +|.+|++|+.|.|..| ++.++. .+|.++ +|+.|.+.+|.+.... .
T Consensus 290 ~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~-~aF~~~-~L~~l~l~~n~~~~l~---~ 362 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF-SAFNNT-GIKEVKVEGTTPPQVF---E 362 (401)
T ss_dssp EECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT-TSSSSS-CCCEEEECCSSCCBCC---C
T ss_pred EECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH-HhCCCC-CCCEEEEcCCCCcccc---c
Confidence 4543 45567889999988 4577773 7888889999999554 776654 667788 8999999988765432 2
Q ss_pred HHhhhcC-CCceeecCCCcc
Q 001983 304 QVFSYFA-HPAKLKVDGKEI 322 (986)
Q Consensus 304 ~~~~~l~-~L~lL~LdgN~I 322 (986)
..|..++ .+..+.+..+.+
T Consensus 363 ~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 363 KVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSCCCSCTTCCEEEECGGGH
T ss_pred ccccCCCCCccEEEeCHHHH
Confidence 3344442 456666665543
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.99 E-value=3.3e-10 Score=124.93 Aligned_cols=67 Identities=21% Similarity=0.250 Sum_probs=59.2
Q ss_pred CCCCCccEEEccC-Cccccchh-hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCcccc
Q 001983 165 PQWNRLSFVSCSC-NRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF 231 (986)
Q Consensus 165 ~~L~sL~~LdLS~-N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~l 231 (986)
..+++|+.|+|++ |.|+.+|. .|..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|+|+.+++.
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 4567899999996 99998874 7999999999999999999975 689999999999999999888753
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=2.3e-09 Score=122.35 Aligned_cols=217 Identities=11% Similarity=0.129 Sum_probs=137.1
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccccccc
Q 001983 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (986)
Q Consensus 82 ~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~l~~L 161 (986)
.|.++ +|+.+.|..+ +..+...+|.+ .+|+.+.|.+ .++.+.+.+|.++.+|..+.+..|.+..++...+.
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~----- 201 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV----- 201 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-----
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-----
Confidence 34443 5777776544 55555566666 3577777765 56555556666666655555555555555543322
Q ss_pred cCCCCCCCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-ccccccc
Q 001983 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCH 237 (986)
Q Consensus 162 ~~l~~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~s 237 (986)
..+|+.+.+.. .++.++. +|..+++|+.|.|..| ++.++ +|.. .+|+.+.| .+.++.++. .+..+++
T Consensus 202 -----~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 202 -----YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPE 272 (401)
T ss_dssp -----TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTT
T ss_pred -----ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCC
Confidence 24666777663 3665554 5666777777777654 44443 4555 56777777 445666654 4455678
Q ss_pred ceeeccCCCccC-----Cc--ccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcC
Q 001983 238 IVKLVLRNNALT-----TL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA 310 (986)
Q Consensus 238 L~~L~Ls~N~Ls-----~L--~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~ 310 (986)
|+.+.+.+|.+. .+ ..|..|++|+.+.|. +.++.++. .+|.++++|+.|.|..| +. ......|..+
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~-~aF~~c~~L~~l~lp~~-l~---~I~~~aF~~~- 345 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ-GLLGGNRKVTQLTIPAN-VT---QINFSAFNNT- 345 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT-TTTTTCCSCCEEEECTT-CC---EECTTSSSSS-
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh-hhhcCCCCccEEEECcc-cc---EEcHHhCCCC-
Confidence 888888777665 34 367888888888887 45777664 66778888888888655 44 2234556667
Q ss_pred CCceeecCCCccC
Q 001983 311 HPAKLKVDGKEIS 323 (986)
Q Consensus 311 ~L~lL~LdgN~Is 323 (986)
.|+.+.+.+|.+.
T Consensus 346 ~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 346 GIKEVKVEGTTPP 358 (401)
T ss_dssp CCCEEEECCSSCC
T ss_pred CCCEEEEcCCCCc
Confidence 7888888888664
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=1.5e-07 Score=102.12 Aligned_cols=113 Identities=31% Similarity=0.462 Sum_probs=83.6
Q ss_pred cCCcCCCCe--ecCCCCCcCCccc----cccccccceeeccCCCccCCcccC----CCCCCCCEEEccCCCCCCCchhhh
Q 001983 209 LRKCVNLKH--LDLGFNNLRSIAA----FSEVSCHIVKLVLRNNALTTLRGI----ENLKSLEGLDISYNIISTFSELEF 278 (986)
Q Consensus 209 L~~L~~L~~--LdLS~N~Ls~L~~----l~~~L~sL~~L~Ls~N~Ls~L~~L----~~L~sL~~LdLS~N~Ls~lp~l~~ 278 (986)
|...+.|.. ++++.|....++. ....+++|+.|+|++|+|+.++.+ ..+++|+.|+|++|.|+++..+..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 445555555 6777776554443 223468899999999999887544 478999999999999999876666
Q ss_pred hcCCCCCcEEEecCCCCCCC----cccchHHhhhcCCCceeecCCCccCh
Q 001983 279 LASLPYLLNLWLEGNPLCCS----RWYRAQVFSYFAHPAKLKVDGKEIST 324 (986)
Q Consensus 279 L~~L~~L~~L~Ls~NpLt~~----~~~r~~~~~~l~~L~lL~LdgN~Is~ 324 (986)
+..+ +|+.|+|++||++.. ..|+..++..++. +..|||.+++.
T Consensus 217 l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~--L~~LDg~~v~p 263 (267)
T 3rw6_A 217 IKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPK--LLRLDGHELPP 263 (267)
T ss_dssp GTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTT--CCEESSCBCCC
T ss_pred cccC-CcceEEccCCcCccccCcchhHHHHHHHHCcc--cCeECCcCCCC
Confidence 6666 999999999999752 3566777777755 45677887753
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=6.3e-07 Score=101.10 Aligned_cols=156 Identities=15% Similarity=0.138 Sum_probs=97.4
Q ss_pred hhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhhcccc
Q 001983 78 QLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASR 157 (986)
Q Consensus 78 ~Lp~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l~~~~ 157 (986)
.++..+..+|+|+.|+|.+|.-. .++. +. +++|+.|+|..|.++......+..
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~------------------------ 215 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILG------------------------ 215 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHH------------------------
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHH------------------------
Confidence 46677888999999999887322 2232 43 899999999999886533322221
Q ss_pred cccccCCCCCCCccEEEccC--Cc------cccchhhh--cCCCCCCEEECCCCCCCCC-----CCcCCcCCCCeecCCC
Q 001983 158 IVEIKDSPQWNRLSFVSCSC--NR------LVIMDESL--QLLPAVETLDLSRNKFAKV-----DNLRKCVNLKHLDLGF 222 (986)
Q Consensus 158 l~~L~~l~~L~sL~~LdLS~--N~------Lt~LP~sL--~~L~~L~~LdLS~N~Ls~L-----~~L~~L~~L~~LdLS~ 222 (986)
..+++|+.|+|+. |. +..+...+ ..+|+|+.|+|.+|.+... .....+++|+.|+|+.
T Consensus 216 -------~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 216 -------SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp -------SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred -------ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 0245677777642 11 22222223 2467888888888877641 1123567888888888
Q ss_pred CCcCCcc-----ccccccccceeeccCCCccCCc--ccCCC-CCCCCEEEccCCC
Q 001983 223 NNLRSIA-----AFSEVSCHIVKLVLRNNALTTL--RGIEN-LKSLEGLDISYNI 269 (986)
Q Consensus 223 N~Ls~L~-----~l~~~L~sL~~L~Ls~N~Ls~L--~~L~~-L~sL~~LdLS~N~ 269 (986)
|.|+... .....+++|+.|+|++|.|+.. ..+.. + ...++++.++
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 8887532 1223467888888888887763 22221 1 3456777665
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=3.7e-07 Score=92.83 Aligned_cols=122 Identities=20% Similarity=0.148 Sum_probs=89.1
Q ss_pred hhhHHHhcCCCCCcEEEccCC-CCCCC----CCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccch
Q 001983 77 EQLRRILKLLTSLKVVSALPP-PARDP----TPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALR 151 (986)
Q Consensus 77 ~~Lp~~L~~L~nLk~L~Ls~N-~Ls~~----lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~ 151 (986)
+.+...+...++|++|+|++| .+... +...+...++|++|+|++|.|+......+...- ..
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-------~~------- 91 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-------KV------- 91 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-------HH-------
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-------Hh-------
Confidence 456778888999999999999 87632 344566778999999999999764433333221 11
Q ss_pred hhcccccccccCCCCCCCccEEEccCCcccc-----chhhhcCCCCCCEEEC--CCCCCCCC------CCcCCcCCCCee
Q 001983 152 HVFASRIVEIKDSPQWNRLSFVSCSCNRLVI-----MDESLQLLPAVETLDL--SRNKFAKV------DNLRKCVNLKHL 218 (986)
Q Consensus 152 ~l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt~-----LP~sL~~L~~L~~LdL--S~N~Ls~L------~~L~~L~~L~~L 218 (986)
.++|++|+|++|.|+. +...+...++|++|+| ++|.|..- ..+...+.|+.|
T Consensus 92 ---------------n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L 156 (185)
T 1io0_A 92 ---------------NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKF 156 (185)
T ss_dssp ---------------CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred ---------------CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEE
Confidence 2378999999999883 5567778888999999 78888752 245566788888
Q ss_pred cCCCCCcCC
Q 001983 219 DLGFNNLRS 227 (986)
Q Consensus 219 dLS~N~Ls~ 227 (986)
+|++|.|..
T Consensus 157 ~L~~n~i~~ 165 (185)
T 1io0_A 157 GYHFTQQGP 165 (185)
T ss_dssp ECCCSSHHH
T ss_pred eccCCCCCh
Confidence 888887753
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.25 E-value=3.9e-07 Score=102.79 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=18.2
Q ss_pred CCCCCEEEccCCCCCCCch---hhhhcCCCCCcEEEecCCCCC
Q 001983 257 LKSLEGLDISYNIISTFSE---LEFLASLPYLLNLWLEGNPLC 296 (986)
Q Consensus 257 L~sL~~LdLS~N~Ls~lp~---l~~L~~L~~L~~L~Ls~NpLt 296 (986)
+++|++|+|+.|.|.+... ...+..+++|+.|+|++|+|+
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4455555555555544211 011223455555555555544
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.12 E-value=1.7e-06 Score=87.94 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=33.4
Q ss_pred CCccEEEccCCccc-----cchhhhcCCCCCCEEECCCCCCCCC------CCcCCcCCCCeecC--CCCCcC
Q 001983 168 NRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNKFAKV------DNLRKCVNLKHLDL--GFNNLR 226 (986)
Q Consensus 168 ~sL~~LdLS~N~Lt-----~LP~sL~~L~~L~~LdLS~N~Ls~L------~~L~~L~~L~~LdL--S~N~Ls 226 (986)
++|++|+|++|.|. .+...+...++|++|+|++|.|..- ..+...+.|+.|+| ++|.|.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 35667777777665 2334455556666666666666541 24444555555555 455554
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.06 E-value=2.2e-05 Score=88.28 Aligned_cols=141 Identities=13% Similarity=0.147 Sum_probs=61.8
Q ss_pred CCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCC-CCcCCcCCCCeecCCCCCcCCccccccccccceeeccCC
Q 001983 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKV-DNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRN 245 (986)
Q Consensus 168 ~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L-~~L~~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~ 245 (986)
.+|+.+.+..+ ++.++. .+..+..|+.+.+..+...-- ..+..+..|+.+.+..+.+.. ..+..+.+|+.+.+..
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECT
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc--cccccccccccccccc
Confidence 34555555432 233322 455556666666655432211 134444444444443332111 1222334555555543
Q ss_pred CccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecC
Q 001983 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVD 318 (986)
Q Consensus 246 N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~Ld 318 (986)
+ ++.++ +|..+.+|+.++|..+ ++.++. .++.++.+|+.+.+..| +.. .....|..+..|+.+.|.
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~c~~L~~i~lp~~-l~~---I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK-RSFRGCTSLSNINFPLS-LRK---IGANAFQGCINLKKVELP 374 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CCEECT-TTTTTCTTCCEECCCTT-CCE---ECTTTBTTCTTCCEEEEE
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-ccEEhH-HhccCCCCCCEEEECcc-ccE---ehHHHhhCCCCCCEEEEC
Confidence 3 44442 4555555555555432 444433 34555555555555444 321 122334444555555443
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.97 E-value=0.0001 Score=82.96 Aligned_cols=106 Identities=15% Similarity=0.172 Sum_probs=70.0
Q ss_pred cCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCC
Q 001983 209 LRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYL 285 (986)
Q Consensus 209 L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L 285 (986)
|..+..|+.+.+..+. ..+.. .+..++.|+.+.+. +.++.++ +|..+.+|+.+.|..+ ++.+.. .+|.++.+|
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTC
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCCCCC
Confidence 4455566666665432 22332 33445677777774 4566663 7888889999988754 666654 678888899
Q ss_pred cEEEecCCCCCCCcccchHHhhhcCCCceeecCCCcc
Q 001983 286 LNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 322 (986)
Q Consensus 286 ~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~I 322 (986)
+.+.|..+ ++. .....|..+..|+.+.+.++..
T Consensus 337 ~~i~ip~s-v~~---I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 337 ERIAIPSS-VTK---IPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CEEEECTT-CCB---CCGGGGTTCTTCCEEEESSCHH
T ss_pred CEEEECcc-cCE---EhHhHhhCCCCCCEEEECCcee
Confidence 99998655 442 2346678888899988888743
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.82 E-value=0.00014 Score=81.84 Aligned_cols=125 Identities=10% Similarity=0.182 Sum_probs=88.1
Q ss_pred hhcCCCCCCEEECCCCCCCCC--CCcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCcc--cCCCCCCC
Q 001983 186 SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (986)
Q Consensus 186 sL~~L~~L~~LdLS~N~Ls~L--~~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL 260 (986)
+|..+..|+.+.+..+.. .+ ..|.++..|+.+.+. +.++.++. .+..+.+|+.+.|..+ ++.+. +|.+|.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 678888999999876543 33 378889999999996 56777775 4555789999999764 77773 89999999
Q ss_pred CEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCc
Q 001983 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (986)
Q Consensus 261 ~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~ 321 (986)
+.+.|..+ ++.++. .+|.++++|+.+.+.+|... ...+.....|+.+.+..+.
T Consensus 337 ~~i~ip~s-v~~I~~-~aF~~C~~L~~i~~~~~~~~------~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPE-SAFSNCTALNNIEYSGSRSQ------WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CEEEECTT-CCBCCG-GGGTTCTTCCEEEESSCHHH------HHTCBCCCCC---------
T ss_pred CEEEECcc-cCEEhH-hHhhCCCCCCEEEECCceee------hhhhhccCCCCEEEeCCCC
Confidence 99999654 777765 77899999999999988642 1223445556666655443
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.77 E-value=4.4e-05 Score=85.86 Aligned_cols=205 Identities=13% Similarity=0.064 Sum_probs=143.1
Q ss_pred HHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchhh-------
Q 001983 81 RILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHV------- 153 (986)
Q Consensus 81 ~~L~~L~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~l------- 153 (986)
..|.++++|+.+.|.++ +......+|.++.+|+.++|..+ ++.....+|.+...+..+.+..+ ...+...
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~-~~~i~~~~~~~~~l 232 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS-LYYLGDFALSKTGV 232 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCCC
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC-ceEeehhhcccCCC
Confidence 36888999999999654 44466678899999999999876 55555556666554333322221 1111111
Q ss_pred ----ccccccccc--CCCCCCCccEEEccCCccccchhhhcCCCCCCEEECCCCCCCCCCCcCCcCCCCeecCCCCCcCC
Q 001983 154 ----FASRIVEIK--DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS 227 (986)
Q Consensus 154 ----~~~~l~~L~--~l~~L~sL~~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Ls~L~~L~~L~~L~~LdLS~N~Ls~ 227 (986)
++..+..+. ....+..|+.+.+..+....-...|..+..|+.+.+..+.+.. ..+..+.+|+.+.+..+ ++.
T Consensus 233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~ 310 (394)
T 4fs7_A 233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKF 310 (394)
T ss_dssp CEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCE
T ss_pred ceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc-ccccccccccccccccc-cce
Confidence 122222232 2346678999999877555444578888999998887654432 26788899999999765 777
Q ss_pred ccc-cccccccceeeccCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCC
Q 001983 228 IAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (986)
Q Consensus 228 L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~N 293 (986)
++. .+..+.+|+.+.|..+ ++.++ +|.+|.+|+.+.|..| ++.++. .++.++++|+.+.+..+
T Consensus 311 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 311 IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA-NAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT-TTBTTCTTCCEEEEEGG
T ss_pred echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH-HHhhCCCCCCEEEECCC
Confidence 765 4556789999999754 77774 8999999999999876 777765 67899999999999765
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.75 E-value=5e-06 Score=90.15 Aligned_cols=96 Identities=30% Similarity=0.410 Sum_probs=48.7
Q ss_pred EEccCCccccchhh----hcCCCCCCEEECCCCCCCCCCCcC----CcCCCCeecCCCCCcCCccccccccccceeeccC
Q 001983 173 VSCSCNRLVIMDES----LQLLPAVETLDLSRNKFAKVDNLR----KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLR 244 (986)
Q Consensus 173 LdLS~N~Lt~LP~s----L~~L~~L~~LdLS~N~Ls~L~~L~----~L~~L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls 244 (986)
++++.|....++.. ...+++|+.|+|++|+|+.++.+. .+++|+.|+|++|.|+++..+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l------------- 214 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL------------- 214 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGG-------------
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhh-------------
Confidence 45555654433332 134566666666666666554322 445555555555555544221
Q ss_pred CCccCCcccCCCCCCCCEEEccCCCCCC-Cch-----hhhhcCCCCCcEEE
Q 001983 245 NNALTTLRGIENLKSLEGLDISYNIIST-FSE-----LEFLASLPYLLNLW 289 (986)
Q Consensus 245 ~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~-lp~-----l~~L~~L~~L~~L~ 289 (986)
..+..+ +|+.|+|++|.+.. ++. ...+..+|+|+.|+
T Consensus 215 -------~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 -------DKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp -------GGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred -------hhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 112222 66677777776653 211 12355667776664
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.36 E-value=0.0017 Score=72.19 Aligned_cols=125 Identities=10% Similarity=0.111 Sum_probs=71.3
Q ss_pred hcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-cccccccceeeccCCCccCCcc--cCCCCCCCC
Q 001983 187 LQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLE 261 (986)
Q Consensus 187 L~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~ 261 (986)
+....+|+.+.+..+ +..+. .+..+..|+.+.+..+ ++.+.. .+..+..|+.+.+..+ ++.++ .|..+++|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 344445555555433 22222 4566666776666554 555543 3334566777666433 55542 567777777
Q ss_pred EEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCC
Q 001983 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (986)
Q Consensus 262 ~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~Ldg 319 (986)
.+.+.++.++.++. .++.++.+|+.+.|..+ ++. .....|..+..|+.+.+..
T Consensus 290 ~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~---I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 290 KVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKT---IQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCE---ECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccceehh-hhhcCCCCCCEEEcCcc-ccE---EHHHHhhCCCCCCEEEECC
Confidence 77777777776654 56677777777777644 332 2234455666666666543
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.18 E-value=0.0016 Score=72.24 Aligned_cols=123 Identities=14% Similarity=0.257 Sum_probs=95.1
Q ss_pred CCCCccEEEccCCccccchh-hhcCCCCCCEEECCCCCCCCCC--CcCCcCCCCeecCCCCCcCCccc-cccccccceee
Q 001983 166 QWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKL 241 (986)
Q Consensus 166 ~L~sL~~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Ls~L~--~L~~L~~L~~LdLS~N~Ls~L~~-l~~~L~sL~~L 241 (986)
.+.+|+.+.+..+ +..++. .+..+..|+.+.+..+ ++.+. .+..+..|+.+.+..+ +..++. .+..+.+|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 4567778777654 454443 6788899999999776 66653 7888899999998654 666664 45567899999
Q ss_pred ccCCCccCCcc--cCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCC
Q 001983 242 VLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (986)
Q Consensus 242 ~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~N 293 (986)
.+.++.++.++ +|.+|.+|+.+.|..+ ++.++. .++.++.+|+.+.+..+
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV-YAFKNCKALSTISYPKS 343 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCCCCCCTT
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH-HHhhCCCCCCEEEECCc
Confidence 99999998884 8999999999999754 777764 67889999999988765
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.96 E-value=0.001 Score=64.01 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=48.7
Q ss_pred eeccCCCccC--CcccCCCCCCCCEEEccCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 001983 240 KLVLRNNALT--TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (986)
Q Consensus 240 ~L~Ls~N~Ls--~L~~L~~L~sL~~LdLS~N~Ls~lp~l~~L~~L~~L~~L~Ls~NpLt~~~~~ 301 (986)
.++.+++.|+ .+|. .-.++|+.|+|++|.|+.++. ..|..+++|+.|+|.+|||.|+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeeccCcc
Confidence 6677777777 6652 122479999999999999986 6788999999999999999999864
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.95 E-value=0.00066 Score=70.36 Aligned_cols=120 Identities=16% Similarity=0.176 Sum_probs=82.1
Q ss_pred hhHHHhcCCCCCcEEEccCC-CCCC----CCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhhhhhccCCCccchh
Q 001983 78 QLRRILKLLTSLKVVSALPP-PARD----PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRH 152 (986)
Q Consensus 78 ~Lp~~L~~L~nLk~L~Ls~N-~Ls~----~lP~sf~~L~nL~~LdLS~N~Lt~~lp~~L~~L~~LL~LLL~~N~L~~L~~ 152 (986)
.+...+.+-+.|+.|+|++| .|.. .+..++..-+.|+.|+|++|.|+......|...- ..|
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-------~~N------- 97 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-------ETS------- 97 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-------HHC-------
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-------hcC-------
Confidence 45566777888999999885 6653 2344566678899999999999765554444331 122
Q ss_pred hcccccccccCCCCCCCccEEEccCCccc-----cchhhhcCCCCCCEEECCCCC---CCC-----C-CCcCCcCCCCee
Q 001983 153 VFASRIVEIKDSPQWNRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNK---FAK-----V-DNLRKCVNLKHL 218 (986)
Q Consensus 153 l~~~~l~~L~~l~~L~sL~~LdLS~N~Lt-----~LP~sL~~L~~L~~LdLS~N~---Ls~-----L-~~L~~L~~L~~L 218 (986)
+.|+.|+|+.|.|. .+.+.+..-+.|+.|+|++|. +.. + ..+..-+.|+.|
T Consensus 98 ---------------~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L 162 (197)
T 1pgv_A 98 ---------------PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRV 162 (197)
T ss_dssp ---------------SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred ---------------CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeE
Confidence 37889999999888 455567777788899888653 332 1 245556778888
Q ss_pred cCCCCCcC
Q 001983 219 DLGFNNLR 226 (986)
Q Consensus 219 dLS~N~Ls 226 (986)
+|+.|.+.
T Consensus 163 ~l~~~~~g 170 (197)
T 1pgv_A 163 GISFASME 170 (197)
T ss_dssp ECCCCCHH
T ss_pred eccCCCcc
Confidence 88777543
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.80 E-value=0.00078 Score=68.65 Aligned_cols=39 Identities=8% Similarity=0.058 Sum_probs=27.3
Q ss_pred CCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCC-CCc
Q 001983 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-LST 125 (986)
Q Consensus 87 ~nLk~L~Ls~N~Ls~~lP~sf~~L~nL~~LdLS~N~-Lt~ 125 (986)
.+|+.|+|+++.+++..-..+.++++|+.|+|++|. |++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH
Confidence 357777777777766555566777777777777774 654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.46 E-value=0.0028 Score=65.65 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=39.5
Q ss_pred hcCCCCCCEEECCCC-CCCCC------CCcCCcCCCCeecCCCCCcCCcc-----ccccccccceeeccCCCccCCc---
Q 001983 187 LQLLPAVETLDLSRN-KFAKV------DNLRKCVNLKHLDLGFNNLRSIA-----AFSEVSCHIVKLVLRNNALTTL--- 251 (986)
Q Consensus 187 L~~L~~L~~LdLS~N-~Ls~L------~~L~~L~~L~~LdLS~N~Ls~L~-----~l~~~L~sL~~L~Ls~N~Ls~L--- 251 (986)
+..-+.|+.|+|++| .|..- ..+..-+.|+.|+|++|.|.... .....-+.|+.|+|++|.|..-
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344455666666553 55421 23444455666666666554221 1111224455555555555441
Q ss_pred ---ccCCCCCCCCEEEccCC
Q 001983 252 ---RGIENLKSLEGLDISYN 268 (986)
Q Consensus 252 ---~~L~~L~sL~~LdLS~N 268 (986)
..+...+.|+.|+|++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 24445555666666544
No 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.45 E-value=0.0038 Score=63.57 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=52.2
Q ss_pred CCCCeecCCCCCcCCc--cccccccccceeeccCCCc-cCC--cccCCCC----CCCCEEEccCC-CCCCCchhhhhcCC
Q 001983 213 VNLKHLDLGFNNLRSI--AAFSEVSCHIVKLVLRNNA-LTT--LRGIENL----KSLEGLDISYN-IISTFSELEFLASL 282 (986)
Q Consensus 213 ~~L~~LdLS~N~Ls~L--~~l~~~L~sL~~L~Ls~N~-Ls~--L~~L~~L----~sL~~LdLS~N-~Ls~lp~l~~L~~L 282 (986)
..|+.|||+++.|+.. ..+ ..+++|+.|+|++|. |++ +..+..+ ++|++|+|++| +|++- .+..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcC
Confidence 4678888888777642 223 356778888887774 655 2344443 46778888776 36653 34556677
Q ss_pred CCCcEEEecCCC
Q 001983 283 PYLLNLWLEGNP 294 (986)
Q Consensus 283 ~~L~~L~Ls~Np 294 (986)
++|+.|+|++++
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 788888888776
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.53 E-value=0.03 Score=53.74 Aligned_cols=86 Identities=8% Similarity=-0.000 Sum_probs=61.0
Q ss_pred CEEEccCCCCC--CCchhhhhcCC-CCCcEEEecCCCCCCCcccchHHhhhcCCCceeecCCCccChhHHHHHHHHHHhh
Q 001983 261 EGLDISYNIIS--TFSELEFLASL-PYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLIIARR 337 (986)
Q Consensus 261 ~~LdLS~N~Ls--~lp~l~~L~~L-~~L~~L~Ls~NpLt~~~~~r~~~~~~l~~L~lL~LdgN~Is~~e~~~~~~l~~~~ 337 (986)
..++.+++.++ .+|. .+ ++|+.|+|++|.|+..+ ...|..++.|+.+.|.+||+.+++...+...+...
T Consensus 11 ~~v~Cs~~~L~~~~vP~-----~lp~~l~~L~Ls~N~l~~l~---~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~ 82 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT-----AFPVDTTELVLTGNNLTALP---PGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAG 82 (130)
T ss_dssp TEEECCSSCCCTTTSCS-----CCCTTCSEEECTTSCCSSCC---TTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHT
T ss_pred CEEEeCCCCCccccCCC-----CCCcCCCEEECCCCcCCccC---hhhhhhccccCEEEecCCCeeccCccHHHHHHHHh
Confidence 47899999998 8873 23 37999999999998554 46678889999999999999998765554444333
Q ss_pred cCC---CCCCCccCCCCCCC
Q 001983 338 QKR---PAGFGFYSPAKGNA 354 (986)
Q Consensus 338 ~~~---p~~~~~~~P~~~~~ 354 (986)
... ...+.|..|.....
T Consensus 83 ~~~~~~~~~~~C~~P~~l~g 102 (130)
T 3rfe_A 83 RPERAPYRDLRCVAPPALRG 102 (130)
T ss_dssp SSCSGGGTTCBCCBSTTTTT
T ss_pred CcccccccCcEeCcChHHcC
Confidence 211 23445555554433
No 165
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=41.48 E-value=14 Score=35.29 Aligned_cols=30 Identities=33% Similarity=0.701 Sum_probs=23.8
Q ss_pred CCCCCCcc--------------hhhhhhhhhhhHHHHHhhccce
Q 001983 595 RPGSPPHY--------------REDILHRRHNLVAEILQLSAES 624 (986)
Q Consensus 595 ~p~spp~~--------------~~d~l~rr~~~~~e~lq~s~~~ 624 (986)
+|..||.| +|-+-..||.||||++++-.++
T Consensus 72 SPSPpP~Yd~~G~R~NTRE~R~r~~LE~ER~~lIe~~~k~~P~f 115 (124)
T 4fxw_B 72 SPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDF 115 (124)
T ss_dssp CCCCCCCBCTTSCBSSCHHHHHHHHHHHHHHHHHHHGGGTCSSC
T ss_pred CCCCCCccCccccccchHHHHHHHHHHHHHHHHHHHHHHHCcCC
Confidence 46678887 5667788999999999986653
Done!