Query 001987
Match_columns 985
No_of_seqs 701 out of 3643
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 13:57:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1032 Uncharacterized conser 100.0 4.5E-31 9.7E-36 308.7 14.6 276 660-957 119-422 (590)
2 KOG1326 Membrane-associated pr 99.9 1.1E-25 2.3E-30 261.7 -4.1 463 4-625 206-703 (1105)
3 COG5038 Ca2+-dependent lipid-b 99.9 3.2E-21 6.8E-26 229.3 31.0 122 534-656 1038-1160(1227)
4 KOG1028 Ca2+-dependent phospho 99.9 4.4E-22 9.6E-27 227.7 17.1 167 3-181 166-343 (421)
5 cd04016 C2_Tollip C2 domain pr 99.9 8.6E-22 1.9E-26 186.5 15.2 118 536-656 2-121 (121)
6 cd08682 C2_Rab11-FIP_classI C2 99.8 3.1E-20 6.6E-25 179.0 13.8 116 538-654 1-125 (126)
7 cd08376 C2B_MCTP_PRT C2 domain 99.8 8.4E-20 1.8E-24 173.4 15.0 115 537-657 1-115 (116)
8 cd04019 C2C_MCTP_PRT_plant C2 99.8 1.3E-19 2.7E-24 179.1 14.7 124 537-661 1-136 (150)
9 cd04042 C2A_MCTP_PRT C2 domain 99.8 2.1E-19 4.5E-24 172.0 15.8 118 538-657 2-120 (121)
10 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.7E-19 3.7E-24 171.9 13.7 113 538-652 2-125 (126)
11 cd04022 C2A_MCTP_PRT_plant C2 99.8 2.4E-19 5.2E-24 173.1 13.3 120 537-657 1-126 (127)
12 cd04016 C2_Tollip C2 domain pr 99.8 4.7E-19 1E-23 167.8 14.9 114 3-129 1-121 (121)
13 KOG1030 Predicted Ca2+-depende 99.8 7.9E-20 1.7E-24 175.9 9.6 94 535-630 5-98 (168)
14 cd08681 C2_fungal_Inn1p-like C 99.8 2.7E-19 5.8E-24 170.5 12.4 117 536-656 1-118 (118)
15 cd04036 C2_cPLA2 C2 domain pre 99.8 5.9E-19 1.3E-23 168.3 13.3 115 537-657 1-118 (119)
16 cd04024 C2A_Synaptotagmin-like 99.8 9.5E-19 2E-23 169.2 14.4 119 536-655 1-127 (128)
17 cd08395 C2C_Munc13 C2 domain t 99.8 5.3E-19 1.1E-23 167.1 12.1 103 537-641 1-113 (120)
18 cd08375 C2_Intersectin C2 doma 99.8 1.2E-18 2.6E-23 169.6 14.5 117 535-656 14-135 (136)
19 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.1E-18 2.5E-23 166.4 14.0 116 538-655 2-120 (121)
20 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.7E-18 3.7E-23 165.7 13.8 114 536-655 1-120 (121)
21 cd08378 C2B_MCTP_PRT_plant C2 99.8 2E-18 4.4E-23 164.7 13.0 114 538-657 2-120 (121)
22 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 4.1E-18 8.9E-23 163.6 14.0 117 537-654 1-122 (123)
23 cd08682 C2_Rab11-FIP_classI C2 99.8 4.6E-18 1E-22 163.9 13.5 115 6-128 1-126 (126)
24 cd08381 C2B_PI3K_class_II C2 d 99.8 2.4E-18 5.3E-23 164.4 11.3 102 535-638 12-121 (122)
25 cd08677 C2A_Synaptotagmin-13 C 99.8 2.2E-18 4.8E-23 160.5 10.5 101 534-638 12-118 (118)
26 cd08678 C2_C21orf25-like C2 do 99.8 8.9E-18 1.9E-22 161.8 14.3 118 538-659 1-122 (126)
27 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.2E-17 2.5E-22 160.8 15.0 117 536-657 4-123 (126)
28 KOG1032 Uncharacterized conser 99.8 3.4E-19 7.3E-24 209.2 4.5 538 445-983 6-589 (590)
29 cd08378 C2B_MCTP_PRT_plant C2 99.7 1.3E-17 2.7E-22 159.3 13.9 114 6-129 2-119 (121)
30 cd04019 C2C_MCTP_PRT_plant C2 99.7 1.8E-17 3.8E-22 163.8 15.2 127 5-136 1-138 (150)
31 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.6E-17 3.5E-22 158.8 14.3 116 538-655 2-120 (121)
32 cd04028 C2B_RIM1alpha C2 domai 99.7 8.9E-18 1.9E-22 163.9 12.6 106 535-642 28-140 (146)
33 cd04015 C2_plant_PLD C2 domain 99.7 2.1E-17 4.6E-22 165.0 15.4 119 535-656 6-157 (158)
34 cd04043 C2_Munc13_fungal C2 do 99.7 1.7E-17 3.7E-22 160.0 14.3 118 537-661 2-125 (126)
35 cd08377 C2C_MCTP_PRT C2 domain 99.7 2.5E-17 5.5E-22 157.1 15.1 117 536-656 1-118 (119)
36 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.6E-17 3.4E-22 161.9 13.8 118 537-656 1-132 (133)
37 cd04010 C2B_RasA3 C2 domain se 99.7 1.1E-17 2.3E-22 164.4 11.6 102 537-641 1-123 (148)
38 cd04014 C2_PKC_epsilon C2 doma 99.7 3.4E-17 7.4E-22 159.2 15.0 115 535-658 3-130 (132)
39 cd04050 C2B_Synaptotagmin-like 99.7 1.5E-17 3.2E-22 154.9 11.6 101 537-641 1-103 (105)
40 cd04022 C2A_MCTP_PRT_plant C2 99.7 3.1E-17 6.7E-22 158.4 14.1 116 5-130 1-126 (127)
41 cd08677 C2A_Synaptotagmin-13 C 99.7 1.4E-17 3.1E-22 155.1 10.7 97 3-107 13-118 (118)
42 cd04027 C2B_Munc13 C2 domain s 99.7 4.6E-17 1E-21 157.0 14.3 115 537-654 2-127 (127)
43 cd04029 C2A_SLP-4_5 C2 domain 99.7 2.1E-17 4.6E-22 158.7 11.7 105 534-639 13-125 (125)
44 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.6E-17 3.5E-22 159.6 10.9 104 535-639 14-125 (125)
45 cd04017 C2D_Ferlin C2 domain f 99.7 6E-17 1.3E-21 158.0 14.9 117 537-656 2-131 (135)
46 cd04042 C2A_MCTP_PRT C2 domain 99.7 7.3E-17 1.6E-21 154.4 14.3 114 5-131 1-121 (121)
47 cd04039 C2_PSD C2 domain prese 99.7 3.6E-17 7.8E-22 152.5 11.7 94 536-630 1-99 (108)
48 cd04041 C2A_fungal C2 domain f 99.7 2.3E-17 5.1E-22 155.1 10.5 100 536-639 1-107 (111)
49 cd08400 C2_Ras_p21A1 C2 domain 99.7 1.2E-16 2.7E-21 153.7 15.6 117 4-131 4-124 (126)
50 cd08688 C2_KIAA0528-like C2 do 99.7 3.3E-17 7.1E-22 153.9 11.2 102 538-640 1-109 (110)
51 cd08681 C2_fungal_Inn1p-like C 99.7 5.1E-17 1.1E-21 154.8 12.7 111 4-129 1-118 (118)
52 cd08373 C2A_Ferlin C2 domain f 99.7 1E-16 2.3E-21 154.7 14.3 117 542-661 2-120 (127)
53 cd08387 C2A_Synaptotagmin-8 C2 99.7 5E-17 1.1E-21 156.2 11.8 104 535-639 15-123 (124)
54 cd08375 C2_Intersectin C2 doma 99.7 1E-16 2.2E-21 156.0 14.0 113 4-129 15-135 (136)
55 cd08379 C2D_MCTP_PRT_plant C2 99.7 9.3E-17 2E-21 153.2 13.4 112 5-125 1-125 (126)
56 cd04024 C2A_Synaptotagmin-like 99.7 1.3E-16 2.8E-21 154.3 14.3 120 4-129 1-128 (128)
57 cd08385 C2A_Synaptotagmin-1-5- 99.7 7.4E-17 1.6E-21 155.1 12.4 105 534-639 14-123 (124)
58 cd08394 C2A_Munc13 C2 domain f 99.7 1.1E-16 2.4E-21 150.5 13.1 98 536-640 2-101 (127)
59 cd08392 C2A_SLP-3 C2 domain fi 99.7 6.2E-17 1.3E-21 155.7 11.6 104 535-639 14-128 (128)
60 cd04046 C2_Calpain C2 domain p 99.7 2.6E-16 5.6E-21 151.6 15.7 117 535-656 2-121 (126)
61 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 1.4E-16 3.1E-21 152.0 13.7 112 6-129 2-121 (121)
62 cd08376 C2B_MCTP_PRT C2 domain 99.7 3.1E-16 6.7E-21 148.9 14.6 109 5-130 1-115 (116)
63 cd08395 C2C_Munc13 C2 domain t 99.7 1.3E-16 2.8E-21 150.9 11.8 97 5-109 1-112 (120)
64 cd04031 C2A_RIM1alpha C2 domai 99.7 1.1E-16 2.5E-21 154.0 11.5 104 534-639 14-125 (125)
65 cd04017 C2D_Ferlin C2 domain f 99.7 3.7E-16 8E-21 152.4 15.2 117 5-132 2-134 (135)
66 cd08388 C2A_Synaptotagmin-4-11 99.7 1.7E-16 3.7E-21 153.0 12.4 105 535-640 15-128 (128)
67 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 2.8E-16 6.1E-21 153.0 14.0 116 5-129 1-132 (133)
68 cd08382 C2_Smurf-like C2 domai 99.7 2.2E-16 4.7E-21 151.4 12.8 114 538-654 2-122 (123)
69 cd04018 C2C_Ferlin C2 domain t 99.7 1.6E-16 3.5E-21 156.4 12.0 103 538-641 2-126 (151)
70 cd08386 C2A_Synaptotagmin-7 C2 99.7 2.2E-16 4.8E-21 152.0 12.6 105 535-640 15-125 (125)
71 cd08678 C2_C21orf25-like C2 do 99.7 4.6E-16 1E-20 149.9 14.3 117 6-133 1-123 (126)
72 cd08685 C2_RGS-like C2 domain 99.7 1.4E-16 3.1E-21 151.4 10.4 102 535-638 11-119 (119)
73 cd08377 C2C_MCTP_PRT C2 domain 99.7 6.8E-16 1.5E-20 147.2 15.0 112 4-129 1-118 (119)
74 cd04036 C2_cPLA2 C2 domain pre 99.7 4.1E-16 8.8E-21 148.7 12.8 108 6-130 2-118 (119)
75 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 5.9E-16 1.3E-20 148.6 14.0 115 5-127 1-122 (123)
76 cd04030 C2C_KIAA1228 C2 domain 99.7 3.6E-16 7.8E-21 151.0 12.5 104 535-639 15-127 (127)
77 cd08394 C2A_Munc13 C2 domain f 99.7 4.7E-16 1E-20 146.3 12.7 96 4-108 2-100 (127)
78 cd04011 C2B_Ferlin C2 domain s 99.7 3.3E-16 7.1E-21 147.4 11.7 101 535-640 3-110 (111)
79 cd08690 C2_Freud-1 C2 domain f 99.7 6.9E-16 1.5E-20 151.7 14.2 126 536-663 4-143 (155)
80 cd08680 C2_Kibra C2 domain fou 99.7 2.6E-16 5.7E-21 150.0 10.9 104 534-638 12-124 (124)
81 cd04044 C2A_Tricalbin-like C2 99.7 5.8E-16 1.3E-20 148.8 13.3 117 536-656 2-122 (124)
82 cd08389 C2A_Synaptotagmin-14_1 99.7 3.6E-16 7.7E-21 150.0 11.7 104 535-640 15-124 (124)
83 cd04010 C2B_RasA3 C2 domain se 99.7 4.7E-16 1E-20 152.9 12.6 98 5-109 1-122 (148)
84 cd08381 C2B_PI3K_class_II C2 d 99.7 4.4E-16 9.6E-21 148.8 12.0 97 3-107 12-121 (122)
85 KOG1030 Predicted Ca2+-depende 99.7 2.8E-16 6E-21 151.6 10.4 89 1-95 3-97 (168)
86 cd04040 C2D_Tricalbin-like C2 99.7 5.7E-16 1.2E-20 146.8 12.5 112 538-651 1-113 (115)
87 cd08392 C2A_SLP-3 C2 domain fi 99.7 5.3E-16 1.2E-20 149.2 12.1 101 3-108 14-128 (128)
88 cd08391 C2A_C2C_Synaptotagmin_ 99.7 1E-15 2.2E-20 146.4 13.8 109 4-129 1-121 (121)
89 cd04049 C2_putative_Elicitor-r 99.7 5.6E-16 1.2E-20 148.9 11.9 105 536-641 1-109 (124)
90 cd04045 C2C_Tricalbin-like C2 99.7 7.2E-16 1.6E-20 146.9 12.5 102 536-640 1-103 (120)
91 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 4E-16 8.7E-21 156.4 11.2 106 534-640 25-138 (162)
92 cd08521 C2A_SLP C2 domain firs 99.7 4.9E-16 1.1E-20 149.1 11.2 104 534-638 12-123 (123)
93 cd04028 C2B_RIM1alpha C2 domai 99.7 8.6E-16 1.9E-20 150.0 12.7 98 3-109 28-138 (146)
94 cd08390 C2A_Synaptotagmin-15-1 99.7 9.2E-16 2E-20 147.2 12.5 106 534-640 12-123 (123)
95 cd04038 C2_ArfGAP C2 domain pr 99.6 7.9E-16 1.7E-20 150.9 11.9 92 536-630 2-93 (145)
96 cd04051 C2_SRC2_like C2 domain 99.6 5.4E-16 1.2E-20 149.3 10.5 114 537-652 1-125 (125)
97 cd08675 C2B_RasGAP C2 domain s 99.6 7.2E-16 1.6E-20 150.4 11.1 103 538-642 1-122 (137)
98 cd04027 C2B_Munc13 C2 domain s 99.6 1.9E-15 4E-20 145.8 13.7 115 4-127 1-127 (127)
99 cd04029 C2A_SLP-4_5 C2 domain 99.6 1.1E-15 2.4E-20 146.7 11.8 98 3-108 14-125 (125)
100 cd04046 C2_Calpain C2 domain p 99.6 4.4E-15 9.6E-20 143.0 15.9 116 3-131 2-123 (126)
101 cd08393 C2A_SLP-1_2 C2 domain 99.6 1.1E-15 2.3E-20 147.0 11.2 98 3-108 14-125 (125)
102 KOG0696 Serine/threonine prote 99.6 1E-16 2.3E-21 171.8 4.6 123 516-640 153-288 (683)
103 cd04032 C2_Perforin C2 domain 99.6 1.3E-15 2.9E-20 145.5 11.7 93 533-627 25-118 (127)
104 cd04014 C2_PKC_epsilon C2 doma 99.6 4.7E-15 1E-19 144.2 15.4 113 1-131 1-130 (132)
105 cd08676 C2A_Munc13-like C2 dom 99.6 1.1E-15 2.4E-20 150.6 11.0 100 533-638 25-153 (153)
106 cd08688 C2_KIAA0528-like C2 do 99.6 1.7E-15 3.8E-20 142.2 11.2 98 6-108 1-108 (110)
107 cd04050 C2B_Synaptotagmin-like 99.6 2.1E-15 4.5E-20 140.4 11.4 95 5-108 1-101 (105)
108 cd08680 C2_Kibra C2 domain fou 99.6 1.6E-15 3.5E-20 144.7 10.9 98 3-107 13-124 (124)
109 cd04015 C2_plant_PLD C2 domain 99.6 5.3E-15 1.1E-19 147.8 15.0 116 2-129 5-157 (158)
110 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 5.4E-15 1.2E-19 141.3 14.4 112 6-128 2-120 (121)
111 cd04011 C2B_Ferlin C2 domain s 99.6 2.5E-15 5.5E-20 141.3 11.6 101 4-109 4-110 (111)
112 cd08382 C2_Smurf-like C2 domai 99.6 5.2E-15 1.1E-19 141.9 13.2 113 5-127 1-122 (123)
113 cd08373 C2A_Ferlin C2 domain f 99.6 7.9E-15 1.7E-19 141.6 14.2 113 10-134 2-120 (127)
114 cd04037 C2E_Ferlin C2 domain f 99.6 3.1E-15 6.8E-20 143.5 11.2 91 537-628 1-93 (124)
115 cd04013 C2_SynGAP_like C2 doma 99.6 7.8E-15 1.7E-19 142.8 14.0 115 537-657 12-139 (146)
116 cd04043 C2_Munc13_fungal C2 do 99.6 1E-14 2.2E-19 140.6 14.7 112 5-131 2-122 (126)
117 cd04044 C2A_Tricalbin-like C2 99.6 6.1E-15 1.3E-19 141.7 12.7 114 4-131 2-124 (124)
118 cd08384 C2B_Rabphilin_Doc2 C2 99.6 1.7E-15 3.7E-20 147.5 8.2 104 534-640 11-121 (133)
119 cd08685 C2_RGS-like C2 domain 99.6 4E-15 8.7E-20 141.4 10.4 98 3-107 11-119 (119)
120 cd04039 C2_PSD C2 domain prese 99.6 7.2E-15 1.6E-19 137.1 11.8 87 4-95 1-98 (108)
121 cd04021 C2_E3_ubiquitin_ligase 99.6 1.1E-14 2.3E-19 140.1 13.2 114 537-654 3-124 (125)
122 cd04013 C2_SynGAP_like C2 doma 99.6 2E-14 4.4E-19 139.9 15.1 124 3-132 10-141 (146)
123 cd08404 C2B_Synaptotagmin-4 C2 99.6 2E-15 4.4E-20 147.5 8.1 103 535-640 14-123 (136)
124 cd04052 C2B_Tricalbin-like C2 99.6 7.9E-15 1.7E-19 137.9 11.2 99 553-657 9-109 (111)
125 cd08388 C2A_Synaptotagmin-4-11 99.6 1E-14 2.2E-19 140.6 12.2 100 3-108 15-127 (128)
126 cd04018 C2C_Ferlin C2 domain t 99.6 1E-14 2.2E-19 143.7 12.2 99 5-108 1-124 (151)
127 cd08406 C2B_Synaptotagmin-12 C 99.6 2.5E-15 5.5E-20 145.8 7.8 103 535-640 14-123 (136)
128 cd08691 C2_NEDL1-like C2 domai 99.6 2.2E-14 4.7E-19 139.2 14.2 114 537-654 2-136 (137)
129 cd08407 C2B_Synaptotagmin-13 C 99.6 1E-14 2.2E-19 141.5 11.5 102 535-639 14-124 (138)
130 cd04026 C2_PKC_alpha_gamma C2 99.6 1.1E-14 2.3E-19 141.5 11.0 103 536-640 13-121 (131)
131 cd08387 C2A_Synaptotagmin-8 C2 99.6 1.5E-14 3.2E-19 139.1 11.9 98 3-108 15-123 (124)
132 cd08389 C2A_Synaptotagmin-14_1 99.6 1.4E-14 3.1E-19 138.9 11.7 97 3-108 15-123 (124)
133 cd04009 C2B_Munc13-like C2 dom 99.6 1E-14 2.2E-19 141.9 10.5 93 535-628 15-118 (133)
134 cd04030 C2C_KIAA1228 C2 domain 99.6 2.2E-14 4.8E-19 138.5 12.8 100 3-108 15-127 (127)
135 cd08385 C2A_Synaptotagmin-1-5- 99.6 2.1E-14 4.6E-19 138.0 12.5 98 3-108 15-123 (124)
136 cd04048 C2A_Copine C2 domain f 99.6 8.9E-15 1.9E-19 139.7 9.4 98 542-639 6-113 (120)
137 cd04031 C2A_RIM1alpha C2 domai 99.6 1.8E-14 4E-19 138.6 11.7 98 2-108 14-125 (125)
138 cd08383 C2A_RasGAP C2 domain ( 99.6 4.9E-14 1.1E-18 133.9 14.1 112 538-656 2-117 (117)
139 cd08405 C2B_Synaptotagmin-7 C2 99.6 6.8E-15 1.5E-19 143.8 8.0 104 535-641 14-124 (136)
140 KOG1028 Ca2+-dependent phospho 99.6 2.4E-14 5.3E-19 164.2 13.5 172 535-711 166-365 (421)
141 cd04051 C2_SRC2_like C2 domain 99.6 1.9E-14 4E-19 138.6 10.7 111 5-125 1-125 (125)
142 cd00275 C2_PLC_like C2 domain 99.6 5E-14 1.1E-18 136.2 13.7 115 537-656 3-127 (128)
143 cd08402 C2B_Synaptotagmin-1 C2 99.5 6.3E-15 1.4E-19 144.0 7.2 103 535-640 14-123 (136)
144 cd08691 C2_NEDL1-like C2 domai 99.5 6.7E-14 1.4E-18 135.8 14.0 116 5-127 2-136 (137)
145 cd04041 C2A_fungal C2 domain f 99.5 2.2E-14 4.8E-19 134.9 9.8 94 4-108 1-107 (111)
146 cd08406 C2B_Synaptotagmin-12 C 99.5 3.7E-14 8E-19 137.7 11.2 84 3-91 14-110 (136)
147 cd08675 C2B_RasGAP C2 domain s 99.5 4.2E-14 9.2E-19 137.9 11.5 98 6-111 1-122 (137)
148 cd08410 C2B_Synaptotagmin-17 C 99.5 2.8E-14 6E-19 139.1 10.1 105 535-641 13-124 (135)
149 cd08521 C2A_SLP C2 domain firs 99.5 5.4E-14 1.2E-18 134.9 11.8 97 3-107 13-123 (123)
150 cd08386 C2A_Synaptotagmin-7 C2 99.5 6.4E-14 1.4E-18 134.8 12.2 98 3-108 15-124 (125)
151 cd08403 C2B_Synaptotagmin-3-5- 99.5 1.1E-14 2.3E-19 142.1 6.8 103 535-640 13-122 (134)
152 PLN03008 Phospholipase D delta 99.5 4.9E-14 1.1E-18 166.9 13.5 101 555-658 75-178 (868)
153 cd08407 C2B_Synaptotagmin-13 C 99.5 4.7E-14 1E-18 136.9 11.1 84 3-91 14-112 (138)
154 cd08686 C2_ABR C2 domain in th 99.5 1.5E-13 3.2E-18 127.7 12.9 80 538-625 1-92 (118)
155 cd00276 C2B_Synaptotagmin C2 d 99.5 2.4E-14 5.1E-19 139.6 7.9 104 535-641 13-123 (134)
156 cd04035 C2A_Rabphilin_Doc2 C2 99.5 7.3E-14 1.6E-18 134.0 11.0 102 535-638 14-123 (123)
157 cd08690 C2_Freud-1 C2 domain f 99.5 3.5E-13 7.7E-18 132.6 15.8 116 5-132 3-139 (155)
158 cd04032 C2_Perforin C2 domain 99.5 6.9E-14 1.5E-18 133.7 10.4 86 4-94 28-119 (127)
159 cd08383 C2A_RasGAP C2 domain ( 99.5 2E-13 4.3E-18 129.8 13.1 110 6-129 2-117 (117)
160 cd04021 C2_E3_ubiquitin_ligase 99.5 2.5E-13 5.5E-18 130.5 14.0 115 4-127 2-124 (125)
161 cd08692 C2B_Tac2-N C2 domain s 99.5 6.3E-14 1.4E-18 134.0 9.6 104 533-638 11-121 (135)
162 cd08408 C2B_Synaptotagmin-14_1 99.5 3E-14 6.5E-19 139.0 7.5 104 535-640 14-125 (138)
163 cd04038 C2_ArfGAP C2 domain pr 99.5 1.4E-13 3.1E-18 134.9 11.4 86 4-95 2-92 (145)
164 cd08390 C2A_Synaptotagmin-15-1 99.5 2E-13 4.4E-18 131.0 12.2 98 3-108 13-122 (123)
165 cd04049 C2_putative_Elicitor-r 99.5 2.1E-13 4.5E-18 131.1 12.0 97 4-108 1-107 (124)
166 cd08409 C2B_Synaptotagmin-15 C 99.5 4.3E-14 9.4E-19 138.0 7.3 104 535-640 14-124 (137)
167 cd04040 C2D_Tricalbin-like C2 99.5 2.3E-13 4.9E-18 129.0 11.8 107 6-125 1-114 (115)
168 cd04052 C2B_Tricalbin-like C2 99.5 2E-13 4.4E-18 128.3 11.2 98 18-131 12-110 (111)
169 cd08408 C2B_Synaptotagmin-14_1 99.5 1.9E-13 4E-18 133.4 11.1 97 3-108 14-124 (138)
170 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 2.1E-13 4.5E-18 136.8 11.7 98 3-108 26-137 (162)
171 cd08692 C2B_Tac2-N C2 domain s 99.5 1.9E-13 4.1E-18 130.7 10.8 85 3-92 13-110 (135)
172 KOG1011 Neurotransmitter relea 99.5 4.6E-14 1E-18 157.0 7.5 124 533-659 292-426 (1283)
173 PLN03200 cellulose synthase-in 99.5 1E-13 2.2E-18 178.7 11.7 121 533-657 1977-2100(2102)
174 cd04009 C2B_Munc13-like C2 dom 99.5 3.1E-13 6.8E-18 131.4 10.8 90 3-97 15-121 (133)
175 cd08384 C2B_Rabphilin_Doc2 C2 99.5 3.4E-13 7.3E-18 131.3 11.0 96 3-108 12-120 (133)
176 cd04045 C2C_Tricalbin-like C2 99.4 8E-13 1.7E-17 126.0 13.0 95 4-108 1-102 (120)
177 cd04047 C2B_Copine C2 domain s 99.4 4.5E-13 9.8E-18 125.8 10.7 88 540-629 4-101 (110)
178 cd08402 C2B_Synaptotagmin-1 C2 99.4 4.9E-13 1.1E-17 130.7 11.3 96 3-108 14-122 (136)
179 cd08404 C2B_Synaptotagmin-4 C2 99.4 6.9E-13 1.5E-17 129.6 11.5 96 3-108 14-122 (136)
180 cd08410 C2B_Synaptotagmin-17 C 99.4 7.3E-13 1.6E-17 129.1 11.2 97 3-108 13-122 (135)
181 cd04026 C2_PKC_alpha_gamma C2 99.4 6.4E-13 1.4E-17 129.0 10.8 100 3-111 12-123 (131)
182 cd08405 C2B_Synaptotagmin-7 C2 99.4 8.6E-13 1.9E-17 128.9 11.6 85 3-92 14-111 (136)
183 cd08686 C2_ABR C2 domain in th 99.4 7.1E-13 1.5E-17 123.2 10.4 83 6-92 1-93 (118)
184 cd08676 C2A_Munc13-like C2 dom 99.4 7.6E-13 1.7E-17 130.6 10.7 92 3-107 27-153 (153)
185 PLN03008 Phospholipase D delta 99.4 1E-12 2.3E-17 155.8 13.7 103 19-133 77-180 (868)
186 KOG2059 Ras GTPase-activating 99.4 6.7E-13 1.4E-17 151.2 11.0 163 2-181 3-174 (800)
187 cd04037 C2E_Ferlin C2 domain f 99.4 1.2E-12 2.7E-17 125.5 11.2 85 5-94 1-93 (124)
188 cd08409 C2B_Synaptotagmin-15 C 99.4 1.2E-12 2.7E-17 127.7 11.3 86 3-93 14-111 (137)
189 cd08403 C2B_Synaptotagmin-3-5- 99.4 1.4E-12 3E-17 127.2 11.3 97 2-108 12-121 (134)
190 cd00275 C2_PLC_like C2 domain 99.4 5.5E-12 1.2E-16 121.8 14.1 111 4-129 2-127 (128)
191 cd04048 C2A_Copine C2 domain f 99.4 1.3E-12 2.9E-17 124.7 9.3 95 10-108 6-113 (120)
192 PF00168 C2: C2 domain; Inter 99.4 2.1E-12 4.5E-17 114.7 9.8 82 538-620 1-85 (85)
193 KOG0696 Serine/threonine prote 99.4 2E-13 4.3E-18 146.9 3.4 97 3-108 179-287 (683)
194 cd00276 C2B_Synaptotagmin C2 d 99.3 7.5E-12 1.6E-16 121.9 11.4 97 2-108 12-121 (134)
195 cd04035 C2A_Rabphilin_Doc2 C2 99.3 2.5E-11 5.5E-16 116.4 11.6 87 3-95 14-114 (123)
196 PLN03200 cellulose synthase-in 99.3 1.4E-11 3E-16 159.5 10.9 114 3-131 1979-2101(2102)
197 KOG1011 Neurotransmitter relea 99.2 8.5E-12 1.8E-16 139.3 7.5 121 3-132 294-426 (1283)
198 KOG2059 Ras GTPase-activating 99.2 1.3E-11 2.7E-16 140.9 9.0 120 537-659 6-127 (800)
199 cd00030 C2 C2 domain. The C2 d 99.2 6.3E-11 1.4E-15 107.8 10.6 100 538-638 1-102 (102)
200 cd04047 C2B_Copine C2 domain s 99.2 4.2E-11 9.1E-16 112.4 9.5 83 7-95 3-101 (110)
201 PF00168 C2: C2 domain; Inter 99.2 8.5E-11 1.8E-15 104.2 9.5 76 6-86 1-85 (85)
202 cd08374 C2F_Ferlin C2 domain s 99.2 1.3E-10 2.9E-15 111.2 10.6 92 538-630 2-125 (133)
203 PLN02223 phosphoinositide phos 99.2 2.1E-10 4.6E-15 131.6 14.0 118 535-656 408-536 (537)
204 smart00239 C2 Protein kinase C 99.1 2E-10 4.3E-15 104.8 10.3 94 538-632 2-98 (101)
205 KOG1013 Synaptic vesicle prote 99.1 3.6E-11 7.8E-16 126.7 3.5 171 3-181 92-278 (362)
206 PLN02952 phosphoinositide phos 99.1 7.5E-10 1.6E-14 130.0 13.8 118 535-656 469-598 (599)
207 KOG1328 Synaptic vesicle prote 99.0 4.4E-11 9.5E-16 135.8 0.1 129 533-662 111-306 (1103)
208 cd08374 C2F_Ferlin C2 domain s 99.0 1.6E-09 3.4E-14 103.9 10.4 86 5-95 1-124 (133)
209 PLN02223 phosphoinositide phos 99.0 3.1E-09 6.6E-14 122.2 14.0 113 3-129 408-536 (537)
210 cd00030 C2 C2 domain. The C2 d 99.0 2.7E-09 5.9E-14 96.8 10.4 94 6-107 1-102 (102)
211 PLN02230 phosphoinositide phos 99.0 2.5E-09 5.3E-14 125.4 12.3 118 535-656 468-597 (598)
212 PLN02270 phospholipase D alpha 99.0 3.2E-09 6.8E-14 126.8 13.3 121 535-658 7-149 (808)
213 PLN02952 phosphoinositide phos 98.9 1.1E-08 2.4E-13 120.3 14.1 95 3-108 469-580 (599)
214 PLN02222 phosphoinositide phos 98.9 9.5E-09 2.1E-13 120.4 13.5 116 536-655 452-579 (581)
215 PLN02228 Phosphoinositide phos 98.9 1.1E-08 2.3E-13 119.7 13.7 120 536-659 431-563 (567)
216 smart00239 C2 Protein kinase C 98.9 8.2E-09 1.8E-13 94.1 10.0 86 5-95 1-95 (101)
217 KOG1031 Predicted Ca2+-depende 98.9 2.9E-09 6.2E-14 118.2 7.9 135 536-672 3-151 (1169)
218 KOG0169 Phosphoinositide-speci 98.9 5.2E-09 1.1E-13 122.2 10.4 117 537-657 617-744 (746)
219 PLN02270 phospholipase D alpha 98.9 1.6E-08 3.4E-13 120.9 13.5 120 2-133 6-151 (808)
220 KOG1328 Synaptic vesicle prote 98.8 1.1E-09 2.4E-14 124.7 1.9 92 535-627 946-1048(1103)
221 cd08689 C2_fungal_Pkc1p C2 dom 98.8 1.5E-08 3.3E-13 90.9 8.1 84 538-628 1-88 (109)
222 PLN02230 phosphoinositide phos 98.8 3.9E-08 8.5E-13 115.5 13.3 113 3-129 468-597 (598)
223 COG5038 Ca2+-dependent lipid-b 98.8 2.8E-08 6E-13 120.4 11.0 96 533-630 433-531 (1227)
224 PLN02222 phosphoinositide phos 98.8 6.4E-08 1.4E-12 113.6 13.7 113 3-129 451-580 (581)
225 KOG0169 Phosphoinositide-speci 98.8 3.2E-08 6.8E-13 115.8 11.0 112 5-130 617-744 (746)
226 PLN02228 Phosphoinositide phos 98.7 1.7E-07 3.8E-12 109.7 13.6 115 4-132 431-563 (567)
227 KOG1264 Phospholipase C [Lipid 98.6 1.1E-07 2.3E-12 109.9 9.8 102 534-640 1063-1171(1267)
228 KOG1031 Predicted Ca2+-depende 98.6 9.9E-08 2.1E-12 106.3 8.7 117 3-129 2-135 (1169)
229 cd08689 C2_fungal_Pkc1p C2 dom 98.6 1.4E-07 3.1E-12 84.8 8.0 79 6-95 1-89 (109)
230 KOG1264 Phospholipase C [Lipid 98.4 5.6E-07 1.2E-11 104.3 9.1 89 2-95 1063-1163(1267)
231 PLN02352 phospholipase D epsil 98.3 4.2E-06 9E-11 100.4 12.1 115 535-658 9-131 (758)
232 PF02893 GRAM: GRAM domain; I 98.2 7.5E-07 1.6E-11 75.9 2.8 60 656-715 7-68 (69)
233 PLN02352 phospholipase D epsil 98.2 1.2E-05 2.6E-10 96.6 12.9 114 2-133 8-133 (758)
234 KOG0905 Phosphoinositide 3-kin 98.1 1.5E-06 3.3E-11 104.5 3.8 105 535-640 1523-1635(1639)
235 smart00568 GRAM domain in gluc 98.1 2.1E-06 4.5E-11 71.2 2.7 55 661-715 5-60 (61)
236 PLN02964 phosphatidylserine de 98.1 3.7E-06 8.1E-11 100.3 5.3 93 531-631 49-142 (644)
237 KOG0905 Phosphoinositide 3-kin 98.0 3.9E-06 8.5E-11 101.1 4.3 98 3-108 1523-1634(1639)
238 cd08683 C2_C2cd3 C2 domain fou 97.7 7.2E-05 1.6E-09 69.6 6.2 100 6-107 1-143 (143)
239 KOG1013 Synaptic vesicle prote 97.7 4.4E-05 9.4E-10 81.5 5.0 87 537-624 234-327 (362)
240 KOG1326 Membrane-associated pr 97.5 4.6E-05 1E-09 91.4 2.5 83 4-91 613-703 (1105)
241 KOG1327 Copine [Signal transdu 97.3 0.00065 1.4E-08 78.3 8.9 139 18-167 10-167 (529)
242 cd08684 C2A_Tac2-N C2 domain f 97.3 0.00018 3.8E-09 62.2 2.7 82 7-95 2-95 (103)
243 PLN02964 phosphatidylserine de 97.2 0.00044 9.5E-09 82.9 6.7 88 2-95 52-140 (644)
244 cd08683 C2_C2cd3 C2 domain fou 97.2 0.00037 8E-09 64.9 3.8 100 539-638 2-143 (143)
245 KOG3837 Uncharacterized conser 97.0 0.00089 1.9E-08 73.4 5.0 133 537-670 368-516 (523)
246 KOG1327 Copine [Signal transdu 96.9 0.0013 2.8E-08 75.9 6.1 86 541-628 141-236 (529)
247 KOG2060 Rab3 effector RIM1 and 96.8 0.00089 1.9E-08 73.0 3.2 107 533-641 266-380 (405)
248 KOG2060 Rab3 effector RIM1 and 96.6 0.0012 2.7E-08 71.9 2.4 103 3-112 268-382 (405)
249 KOG1265 Phospholipase C [Lipid 96.1 0.015 3.2E-07 69.6 8.3 85 2-95 701-797 (1189)
250 KOG3837 Uncharacterized conser 95.9 0.0055 1.2E-07 67.4 3.4 115 5-131 368-504 (523)
251 KOG1265 Phospholipase C [Lipid 95.8 0.028 6.1E-07 67.3 8.7 109 534-654 701-820 (1189)
252 cd08398 C2_PI3K_class_I_alpha 95.8 0.081 1.8E-06 52.7 10.8 101 537-656 9-121 (158)
253 PF12416 DUF3668: Cep120 prote 95.8 0.11 2.4E-06 58.1 12.9 121 538-661 2-136 (340)
254 cd08398 C2_PI3K_class_I_alpha 95.7 0.11 2.3E-06 51.9 11.3 89 3-93 7-107 (158)
255 PF12416 DUF3668: Cep120 prote 95.2 0.26 5.6E-06 55.2 13.4 120 6-132 2-134 (340)
256 PF15627 CEP76-C2: CEP76 C2 do 95.2 0.13 2.7E-06 50.7 9.6 122 537-659 10-152 (156)
257 cd08693 C2_PI3K_class_I_beta_d 95.0 0.18 4E-06 51.1 10.6 103 537-657 9-136 (173)
258 cd08684 C2A_Tac2-N C2 domain f 95.0 0.022 4.7E-07 49.6 3.1 95 539-637 2-102 (103)
259 PF15627 CEP76-C2: CEP76 C2 do 94.8 0.23 5.1E-06 48.9 10.2 120 4-132 9-152 (156)
260 cd08380 C2_PI3K_like C2 domain 94.7 0.23 5.1E-06 49.5 10.2 108 537-661 9-127 (156)
261 cd08397 C2_PI3K_class_III C2 d 94.6 0.2 4.4E-06 50.0 9.6 91 555-661 28-127 (159)
262 cd08693 C2_PI3K_class_I_beta_d 94.4 0.22 4.8E-06 50.6 9.4 91 3-93 7-121 (173)
263 PF10698 DUF2505: Protein of u 93.9 5.1 0.00011 40.1 18.0 148 818-975 4-159 (159)
264 cd08687 C2_PKN-like C2 domain 93.8 0.6 1.3E-05 41.3 9.4 90 7-129 2-92 (98)
265 cd04012 C2A_PI3K_class_II C2 d 93.2 0.41 8.9E-06 48.6 8.9 106 536-657 8-135 (171)
266 cd08380 C2_PI3K_like C2 domain 92.5 0.61 1.3E-05 46.5 8.9 88 3-93 7-108 (156)
267 PF10358 NT-C2: N-terminal C2 91.7 3.8 8.1E-05 40.0 13.3 118 536-660 7-138 (143)
268 KOG1452 Predicted Rho GTPase-a 91.5 0.33 7.1E-06 52.0 5.7 110 2-130 49-167 (442)
269 PF00792 PI3K_C2: Phosphoinosi 90.4 1.9 4.1E-05 42.2 9.8 76 571-662 23-106 (142)
270 cd04012 C2A_PI3K_class_II C2 d 90.2 1.3 2.8E-05 44.9 8.6 92 2-93 6-120 (171)
271 cd08397 C2_PI3K_class_III C2 d 89.9 1 2.2E-05 45.1 7.4 70 18-92 29-107 (159)
272 cd08399 C2_PI3K_class_I_gamma 89.9 2.5 5.4E-05 43.0 10.2 70 537-607 11-88 (178)
273 cd05018 CoxG Carbon monoxide d 89.7 14 0.0003 35.5 15.3 138 818-975 6-143 (144)
274 cd08687 C2_PKN-like C2 domain 88.9 4.2 9E-05 36.2 9.3 84 556-656 8-92 (98)
275 cd08876 START_1 Uncharacterize 88.9 12 0.00026 38.5 15.0 143 818-974 46-193 (195)
276 PF10358 NT-C2: N-terminal C2 88.3 11 0.00024 36.7 13.4 116 5-132 8-137 (143)
277 cd08871 START_STARD10-like Lip 85.8 26 0.00056 37.1 15.6 148 820-978 54-207 (222)
278 cd08399 C2_PI3K_class_I_gamma 85.1 3.9 8.4E-05 41.6 8.3 67 3-69 9-88 (178)
279 cd08868 START_STARD1_3_like Ch 85.0 13 0.00029 38.8 12.8 146 818-971 53-205 (208)
280 PF00792 PI3K_C2: Phosphoinosi 84.9 5 0.00011 39.3 8.8 57 32-93 22-86 (142)
281 cd08870 START_STARD2_7-like Li 84.5 30 0.00064 36.3 15.1 150 818-974 55-209 (209)
282 KOG1452 Predicted Rho GTPase-a 84.3 1.9 4.2E-05 46.3 5.8 81 533-616 48-131 (442)
283 smart00142 PI3K_C2 Phosphoinos 84.0 5.2 0.00011 36.6 8.0 71 538-608 13-92 (100)
284 cd07821 PYR_PYL_RCAR_like Pyra 83.1 26 0.00056 33.2 13.1 131 817-969 5-137 (140)
285 cd00177 START Lipid-binding ST 82.5 37 0.0008 34.3 14.8 131 817-956 43-177 (193)
286 PF14429 DOCK-C2: C2 domain in 81.9 4.9 0.00011 41.3 7.8 58 32-91 61-120 (184)
287 smart00142 PI3K_C2 Phosphoinos 81.1 7.2 0.00016 35.7 7.7 65 5-69 12-91 (100)
288 smart00234 START in StAR and p 79.4 52 0.0011 34.0 14.7 147 818-973 50-202 (206)
289 cd08904 START_STARD6-like Lipi 78.4 55 0.0012 34.2 14.2 76 893-970 121-202 (204)
290 PTZ00447 apical membrane antig 77.5 25 0.00055 38.6 11.3 112 6-131 60-174 (508)
291 PF14429 DOCK-C2: C2 domain in 76.7 9.9 0.00021 39.0 8.1 58 568-625 59-120 (184)
292 cd08905 START_STARD1-like Chol 76.6 64 0.0014 33.8 14.3 81 891-972 123-207 (209)
293 cd07823 SRPBCC_5 Ligand-bindin 76.4 78 0.0017 30.7 15.6 138 818-975 4-144 (146)
294 PF01852 START: START domain; 73.0 64 0.0014 33.3 13.3 107 865-974 89-203 (206)
295 cd08694 C2_Dock-A C2 domains f 72.5 25 0.00053 36.3 9.4 57 568-624 53-114 (196)
296 cd08906 START_STARD3-like Chol 70.8 1.4E+02 0.0031 31.2 15.4 146 817-972 53-207 (209)
297 PF15625 CC2D2AN-C2: CC2D2A N- 70.2 78 0.0017 32.0 12.6 84 18-108 36-123 (168)
298 cd08695 C2_Dock-B C2 domains f 70.0 9.9 0.00022 39.0 6.0 57 31-90 54-112 (189)
299 cd08694 C2_Dock-A C2 domains f 69.7 10 0.00022 39.0 6.0 59 31-90 54-114 (196)
300 PF10698 DUF2505: Protein of u 67.5 1.4E+02 0.003 29.8 14.7 144 256-415 4-155 (159)
301 cd08909 START_STARD13-like C-t 65.7 67 0.0014 33.6 11.2 116 818-945 57-178 (205)
302 cd08910 START_STARD2-like Lipi 65.0 1.1E+02 0.0024 31.9 13.0 145 818-974 54-207 (207)
303 KOG1329 Phospholipase D1 [Lipi 64.6 8 0.00017 47.9 4.7 97 557-655 138-238 (887)
304 cd08874 START_STARD9-like C-te 63.0 98 0.0021 32.4 11.9 120 818-943 50-176 (205)
305 cd08679 C2_DOCK180_related C2 62.9 16 0.00034 37.3 6.0 59 32-91 55-115 (178)
306 PF00407 Bet_v_1: Pathogenesis 62.4 1.7E+02 0.0036 29.0 16.9 140 817-977 8-150 (151)
307 cd08695 C2_Dock-B C2 domains f 61.1 19 0.00041 37.0 6.0 56 568-624 53-112 (189)
308 KOG0694 Serine/threonine prote 61.0 3.2 7E-05 49.8 0.5 95 556-659 27-123 (694)
309 cd08696 C2_Dock-C C2 domains f 57.4 24 0.00052 36.0 6.0 39 31-69 55-95 (179)
310 cd08861 OtcD1_ARO-CYC_like N-t 54.5 2E+02 0.0043 27.3 12.3 59 912-975 82-140 (142)
311 cd08697 C2_Dock-D C2 domains f 53.5 1E+02 0.0022 31.7 9.8 40 568-607 56-97 (185)
312 cd08679 C2_DOCK180_related C2 52.5 36 0.00077 34.7 6.5 56 569-625 54-115 (178)
313 cd08908 START_STARD12-like C-t 52.5 1.3E+02 0.0028 31.4 10.7 113 818-944 57-176 (204)
314 PF04707 PRELI: PRELI-like fam 50.1 2E+02 0.0044 28.6 11.3 71 906-976 81-152 (157)
315 KOG0694 Serine/threonine prote 49.7 4.9 0.00011 48.3 -0.4 96 18-132 27-123 (694)
316 PF15625 CC2D2AN-C2: CC2D2A N- 49.0 64 0.0014 32.5 7.6 80 558-640 38-124 (168)
317 cd08697 C2_Dock-D C2 domains f 48.6 43 0.00094 34.3 6.2 61 31-91 57-123 (185)
318 cd08696 C2_Dock-C C2 domains f 48.3 43 0.00094 34.1 6.2 41 568-608 54-96 (179)
319 PF14909 SPATA6: Spermatogenes 47.7 1.7E+02 0.0037 28.5 9.7 85 5-95 3-102 (140)
320 KOG4347 GTPase-activating prot 47.7 12 0.00026 44.7 2.3 74 677-770 38-111 (671)
321 cd08869 START_RhoGAP C-termina 43.9 3E+02 0.0065 28.4 11.9 114 818-944 49-169 (197)
322 cd08877 START_2 Uncharacterize 43.3 4.1E+02 0.0088 27.7 13.1 145 817-971 50-212 (215)
323 KOG2419 Phosphatidylserine dec 42.6 6 0.00013 46.7 -1.1 60 556-617 304-364 (975)
324 PF14844 PH_BEACH: PH domain a 42.3 10 0.00022 35.0 0.6 73 679-769 18-105 (106)
325 PF10604 Polyketide_cyc2: Poly 40.8 3E+02 0.0066 25.6 14.9 132 817-975 6-138 (139)
326 cd08907 START_STARD8-like C-te 40.1 2.8E+02 0.0061 28.9 10.5 78 865-945 96-178 (205)
327 KOG0904 Phosphatidylinositol 3 38.8 1.1E+02 0.0023 38.3 8.3 116 537-657 344-472 (1076)
328 PTZ00447 apical membrane antig 37.8 2.4E+02 0.0052 31.4 9.9 111 535-655 57-171 (508)
329 PF11618 DUF3250: Protein of u 34.1 1.1E+02 0.0024 28.5 6.0 91 560-654 2-102 (107)
330 KOG1329 Phospholipase D1 [Lipi 33.6 63 0.0014 40.5 5.5 104 19-133 138-243 (887)
331 cd08903 START_STARD5-like Lipi 33.0 5.8E+02 0.013 26.5 15.4 63 909-972 141-206 (208)
332 cd07816 Bet_v1-like Ligand-bin 32.1 4.9E+02 0.011 25.4 13.9 113 817-944 5-119 (148)
333 PF11618 DUF3250: Protein of u 32.1 1.2E+02 0.0027 28.1 6.0 95 22-129 2-104 (107)
334 cd08894 SRPBCC_CalC_Aha1-like_ 30.6 4.8E+02 0.01 24.8 12.7 22 816-837 3-24 (139)
335 PF14470 bPH_3: Bacterial PH d 29.9 2.2E+02 0.0047 25.2 7.2 49 679-731 23-72 (96)
336 cd08911 START_STARD7-like Lipi 29.2 6.7E+02 0.014 26.0 15.8 148 819-974 51-207 (207)
337 cd07824 SRPBCC_6 Ligand-bindin 28.3 5.4E+02 0.012 24.7 15.1 122 817-957 5-132 (146)
338 PF07162 B9-C2: Ciliary basal 28.1 6.3E+02 0.014 25.3 11.6 80 539-625 5-103 (168)
339 cd08865 SRPBCC_10 Ligand-bindi 26.9 5.1E+02 0.011 23.9 14.8 56 914-975 83-138 (140)
340 PF07162 B9-C2: Ciliary basal 26.9 6.3E+02 0.014 25.3 10.7 95 6-106 4-117 (168)
341 PF08151 FerI: FerI (NUC094) d 26.4 88 0.0019 26.8 3.6 43 88-132 2-44 (72)
342 PF01060 DUF290: Transthyretin 26.0 2E+02 0.0044 24.9 6.0 29 592-621 7-35 (80)
343 cd08913 START_STARD14-like Lip 25.4 8.6E+02 0.019 26.1 13.7 106 818-934 86-201 (240)
344 KOG0904 Phosphatidylinositol 3 24.4 1.2E+02 0.0025 38.0 5.4 67 3-69 342-422 (1076)
345 cd07817 SRPBCC_8 Ligand-bindin 23.4 6E+02 0.013 23.6 13.2 58 915-975 80-137 (139)
346 cd08867 START_STARD4_5_6-like 23.3 8.3E+02 0.018 25.2 13.4 75 893-968 124-202 (206)
347 cd08862 SRPBCC_Smu440-like Lig 23.1 6.1E+02 0.013 23.5 12.6 131 817-975 5-136 (138)
348 PF06219 DUF1005: Protein of u 22.1 2.6E+02 0.0056 32.2 7.2 112 18-132 35-169 (460)
349 cd07822 SRPBCC_4 Ligand-bindin 21.2 6.6E+02 0.014 23.2 15.1 56 914-975 85-140 (141)
350 cd07812 SRPBCC START/RHO_alpha 21.1 6E+02 0.013 22.7 14.6 54 914-973 84-139 (141)
351 KOG2419 Phosphatidylserine dec 20.1 17 0.00037 43.1 -2.4 51 18-69 304-355 (975)
No 1
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.97 E-value=4.5e-31 Score=308.67 Aligned_cols=276 Identities=17% Similarity=0.223 Sum_probs=216.6
Q ss_pred CCcchhhhhhhhhhhhccccceeEeeeeEeeeeccccCcceEEEEeccccccccccCCcccccCCCeEEEEEecCCCccc
Q 001987 660 NGVETIKEYLTKMEKEVGKKGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDA 739 (985)
Q Consensus 660 ~~~~~l~~~l~~lek~i~~~gr~y~s~~~~~f~snif~~~~~~~i~~~di~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~ 739 (985)
.....+.++.|++.+++..+||||++..++|||||||||+++.+||+++|..++|..+| .+.+++++|..
T Consensus 119 ~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~ta--g~fpn~i~i~t-------- 188 (590)
T KOG1032|consen 119 DPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTA--GIFPNAIEITT-------- 188 (590)
T ss_pred CcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhc--cCCCcceEEec--------
Confidence 34556788899999999999999999999999999999999999999999999999998 56667777762
Q ss_pred cCCCCcCCccccEEEEEeeccCcchhhHHHHHHHHhcc---CCc----------hhhhhhh----hhhccccc-------
Q 001987 740 RHGAKSQDEEGRLRFYFQSFVSFNDASRTIMALWRSRT---LTA----------YQKEQIA----EEQQVQEE------- 795 (985)
Q Consensus 740 ~~~~~~~~~~~~~k~~F~SF~srd~a~~~i~~~w~~~~---~~~----------~~~~~~~----~~~~~~~~------- 795 (985)
+..+|.|+||.+||.||.+|..+-+... .++ +.+.... ........
T Consensus 189 ----------~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~s~~ 258 (590)
T KOG1032|consen 189 ----------GTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNVDNSQSPSALQNSFD 258 (590)
T ss_pred ----------CCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCcccccccccCCCccccccccC
Confidence 3458999999999999997644333211 111 1000000 00000000
Q ss_pred ccccccC-CCCCCccccccceeEeeeecCChHHHHh-ccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEe--
Q 001987 796 MSTAADR-GSVPNFEDAKMSKVYNAELPISVKALME-MFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF-- 871 (985)
Q Consensus 796 ~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~-lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~-- 871 (985)
.+.++.. ..+-..-......+.+-.+.+++..||+ +|.+..|...+.+.+..+++...+|.....+...|.++|+.
T Consensus 259 ~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~~~~~~r~~~y~~~l 338 (590)
T KOG1032|consen 259 SPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPRSGILLRTLSYTKGL 338 (590)
T ss_pred CCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCCccceeEeccCCccC
Confidence 0000000 0000000001345667788899999999 68988899999999999999999999777789999999996
Q ss_pred ccccCCCceeeeeEEEEeeccCCCcEEEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhh
Q 001987 872 NRHVSIFGGEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQR 951 (985)
Q Consensus 872 ~~~~~~~~~~~~~~q~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~ 951 (985)
..+++|+.+.|.++|...+....+++.|...+.|+|||||++|+|++||||+|..+ ++|+|.|+.+|.|.+++|.+.+
T Consensus 339 ~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~--~~~~l~v~~~V~~~~~sw~~~~ 416 (590)
T KOG1032|consen 339 PAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGS--NSCKLKVSTSVEWTKSSWDVPV 416 (590)
T ss_pred CCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCC--cceeecceeEEEeccCchhhcc
Confidence 88999999999999888888888889999999999999999999999999999999 9999999999999999999999
Q ss_pred hhhchH
Q 001987 952 ITQNIT 957 (985)
Q Consensus 952 Ie~~~~ 957 (985)
+|.++.
T Consensus 417 ~~~~~~ 422 (590)
T KOG1032|consen 417 SEIGSN 422 (590)
T ss_pred cccccc
Confidence 999886
No 2
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.90 E-value=1.1e-25 Score=261.74 Aligned_cols=463 Identities=19% Similarity=0.215 Sum_probs=298.2
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEE-Ee--------cCCCceEEEEEEec
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFR-VH--------NIDDEELVVSVFQH 68 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~-v~--------~~~~~~L~~~V~D~ 68 (985)
-.|+++++|||+|. .+|||+.+.+.++.+.|.++.+|+||.|+++..|. +. ...-..+.|+|||.
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~ 285 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL 285 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence 35788999999998 79999999999999999999999999999999998 43 22336788999999
Q ss_pred CCCCCCCCCCCCeeEEEEE-eCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecCCeeeEEEEeeeccC
Q 001987 69 NDDSGLFGSSGELMGRVRV-PVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHSN 147 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i-~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~a~~ 147 (985)
+ + .+.++|+|+... |...+. .+...|+++.+. +...|+++++++.+.....
T Consensus 286 d---r--~g~~ef~gr~~~~p~V~~~-----~p~lkw~p~~rg------~~l~gd~l~a~eliq~~~~------------ 337 (1105)
T KOG1326|consen 286 D---R--SGINEFKGRKKQRPYVMVQ-----CPALKWVPTMRG------AFLDGDVLIAAELIQIGKP------------ 337 (1105)
T ss_pred h---h--hchHHhhcccccceEEEec-----CCccceEEeecc------cccccchhHHHHHHhhcCC------------
Confidence 9 5 689999999887 444333 346789999822 4567998888876543220
Q ss_pred CCCCCCCCCCCCe--EEEEEcCCCCCCccccccccchhhhHHHHHHHhhccCC-CCCCCC-CCCCCCCCCCCCcCCC-CC
Q 001987 148 VSSNESKELEDPC--VLSHDVSCSKAPCLDVTEGNHLMKAMVSHLEKIFNKND-QGLKTE-DSSELSSTPSDYEDCV-EE 222 (985)
Q Consensus 148 L~~~d~~g~sdP~--vkv~l~~~~~~~~~k~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~-~~~~~~~~~~~~e~~~-~~ 222 (985)
+ +..+|- .-+++.+.+++++.+.++.+.++.-+- |-+. +.+... .+-...++++...... -+
T Consensus 338 i------~~p~~~~~~~~~~vp~~iRp~~q~~~~evl~wgLr-------n~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~ 404 (1105)
T KOG1326|consen 338 I------PQPPPQREIIFSLVPKKIRPKTQIGKAELLMWGLR-------NPKKSGMASTFSPALLVEFGGERVSSFSIFN 404 (1105)
T ss_pred C------CCCCcccccceeccccCCCcceeeeeeehhhhhhc-------ccccccccccCCcceeEeeCCceEeeeeehh
Confidence 0 111110 247889999999999999998765542 2222 222222 1222456666555444 56
Q ss_pred CCCCCchHHHHHhhcccCCCCCC---CCCCCCcceEeeEeecChhhhhhcccCCCchhhHHH----HHHhCCccceeCCC
Q 001987 223 HPPSHNFEEAIKMMQSRENEGDM---PENLQGGILLDQLYQVSPCDLNTFLFAPDSQFRKDL----AELQGTKDVQEGPW 295 (985)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~e~---p~~~~g~~~~d~~~~~~~~~l~~llf~~~s~F~~~~----~~~~~~~d~~~~pw 295 (985)
-..++||..++..+.+..+.++. |.+. +++|. ++|.+.- +.+..+..+.|+||
T Consensus 405 ~k~npnf~s~~~~~~v~lpd~e~Y~ppl~a---kvvd~-----------------~~fg~~~v~g~c~i~~l~nf~c~p~ 464 (1105)
T KOG1326|consen 405 RKKNPNFPSRVLGRLVILPDEELYMPPLNA---KVVDL-----------------RQFGRMEVVGQCKILSLYNFFCDPS 464 (1105)
T ss_pred hhhCCCCceeEEEEEEeccchHhhCcccee---EEEec-----------------ccccceeehhhhcchhhhhhccCch
Confidence 67778887777777777766655 3233 34443 4455554 44445566678888
Q ss_pred cccCCCCCceEEEEEEEeccCcCccceEEEEEEEEEeeCCCeEEEEEEEeCCCCCCCCceEeEEEEEEecCCCCCCCCCc
Q 001987 296 EWKSGEMTCLTRAVSYMKAATKLVKAVKATEQQTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDS 375 (985)
Q Consensus 296 ~~~~~~~~~~~R~~~y~~~~~~~~k~~~~~e~q~~~~~~~~~~~v~~~~~tpdvP~g~~F~v~~~y~i~~~~~~~~~~~~ 375 (985)
..+.-.|.-..-. +.-++ ++.+ +.++...+..+. . .-..+.
T Consensus 465 ~~~~~~Pq~~~d~------~~~~~---------------------------~~~~--~~~~~~~~~~l~---~-~~~~~~ 505 (1105)
T KOG1326|consen 465 AVNSITPQFASDP------VSIMM---------------------------GSTD--NEIRHCNSSTLP---A-SPHEDE 505 (1105)
T ss_pred hhcccCcCCCCCc------hhhhc---------------------------CCch--hhhhhccccCCC---C-Cccccc
Confidence 5332221110000 00000 0000 011111111111 1 112234
Q ss_pred cEEEEEEEEEEeeecceeeeeecccccchHHHHHHHHHHHHhhccccCCCCccchhhhhcccccccccchhhhhhcccce
Q 001987 376 SHLIISWGIDFHQSTMMRGMIEGGARQGLKESFEQFANLLAQNLKILDSKDASDKDHMLATLQTEQQSDWELASEYFWNF 455 (985)
Q Consensus 376 ~~l~v~~~i~~~~s~~~Kg~iek~~~~g~~e~~~~~~~~l~~~~k~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~f~~~ 455 (985)
+.-.++||.+|+.++ +.- ++-+. +.+....++|.|++++ | .+..|.++
T Consensus 506 ~e~~~~~w~k~~~~~---~~~---~k~~~------~~~K~~~~LKiyn~el----e----------------~v~ef~~l 553 (1105)
T KOG1326|consen 506 EEREVDWWGKFYPSA---EEN---AKWEV------YEHKINVTLKIYNMEL----E----------------MVAEFRGL 553 (1105)
T ss_pred cceehhhhhhccccc---ccc---ccccc------cccccceEEEEehhhh----h----------------hHHHHhhh
Confidence 445789999999887 111 11111 1111123667776655 2 34557777
Q ss_pred eeeehhhHHHHheeeeeee-cCCCCCCccccC----CCCCCccceeEEeeEEEEechhhhhhhhHhhhcccccCCCCCcc
Q 001987 456 TVVSAGFMILYVVVHILLC-EPSKRQGLEFYG----LDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKGSDHGVK 530 (985)
Q Consensus 456 ~~~~~~~~~l~~~~~~~~~-~p~~~~~~e~~g----~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 530 (985)
.+.+.+|. +|++....-+ .+.+ .| +|+| +++|++.+.+. ..++|. .++..
T Consensus 554 ~D~~~~f~-l~rG~~~~e~~e~~I-vg-~fKgl~rIyp~~~~~~~p~--------------~pr~~~---~~~~~----- 608 (1105)
T KOG1326|consen 554 QDWAVTFK-LYRGKEGLECLEQQI-VG-EFKGLFRIYPVPRNPSSPA--------------PPRHFL---DLPKE----- 608 (1105)
T ss_pred hhccceeE-eeeccccCCCcccch-hh-hhhcceeeecCCCccCCCC--------------Chhhhh---ccccc-----
Confidence 87777777 6666643111 2222 23 6777 36665544433 223332 22211
Q ss_pred ccCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEE--EeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCC
Q 001987 531 AQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTR--TSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG 608 (985)
Q Consensus 531 ~~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~--kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~ 608 (985)
.....+++|+|++|.+|.+.|.+|.+|||+.+.+|++.. +...+.+|+||++++.|++.+..+....|.++|||+|.
T Consensus 609 -~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~ 687 (1105)
T KOG1326|consen 609 -EPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDL 687 (1105)
T ss_pred -CcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeec
Confidence 133568999999999999999999999999999998874 56679999999999999999877888899999999999
Q ss_pred CCCCCCccceEEEEeec
Q 001987 609 PFDQATSLGHAEINFLK 625 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~ 625 (985)
++.|+.||++.|+|+.
T Consensus 688 -~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 688 -EAQDEKIGETTIDLEN 703 (1105)
T ss_pred -ccccchhhceehhhhh
Confidence 7999999999999986
No 3
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.89 E-value=3.2e-21 Score=229.34 Aligned_cols=122 Identities=28% Similarity=0.425 Sum_probs=109.2
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCC
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 612 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~ 612 (985)
..|.|+|.+..|.||+..|.+|.+||||++.++++ .++|+++++|+||+|||+|..++.......|.+.|+|||.. .+
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~-~k 1116 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG-EK 1116 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccC-CC
Confidence 47899999999999999999999999999999976 79999999999999999999998778888999999999984 89
Q ss_pred CCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEee
Q 001987 613 ATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~l 656 (985)
+|.||.+.|+|..+..+.....-.+|+++.-....|.+|+.+.+
T Consensus 1117 nd~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~ 1160 (1227)
T COG5038 1117 NDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNF 1160 (1227)
T ss_pred ccccccccccHhhcCcCCccceeeeccCcceEecccEeecceec
Confidence 99999999999999999888888999986644456666666543
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.4e-22 Score=227.68 Aligned_cols=167 Identities=26% Similarity=0.358 Sum_probs=146.6
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDD 71 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~ 71 (985)
...|.|+|++|++|+ .+||||++++++ .+.+|++.++|+||.|||+|.|.|+ +.....|.+.|||.|
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d-- 243 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD-- 243 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC--
Confidence 468999999999999 589999999985 4599999999999999999999976 588999999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecCCeeeEEEEeeeccCCCCC
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHSNVSSN 151 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~a~~L~~~ 151 (985)
+ ++++++||++.++|..+.... ....|++|....... ....|+|+++++|.+.++++++.|++ |+||+.+
T Consensus 244 -r--fsr~~~iGev~~~l~~~~~~~---~~~~w~~l~~~~~~~--~~~~gel~~sL~Y~p~~g~ltv~v~k--ar~L~~~ 313 (421)
T KOG1028|consen 244 -R--FSRHDFIGEVILPLGEVDLLS---TTLFWKDLQPSSTDS--EELAGELLLSLCYLPTAGRLTVVVIK--ARNLKSM 313 (421)
T ss_pred -C--cccccEEEEEEecCccccccc---cceeeeccccccCCc--ccccceEEEEEEeecCCCeEEEEEEE--ecCCCcc
Confidence 7 479999999999999998763 257899998433322 22338999999999999999999997 9999999
Q ss_pred CCCCCCCCeEEEEEcCCCCCCccccccccc
Q 001987 152 ESKELEDPCVLSHDVSCSKAPCLDVTEGNH 181 (985)
Q Consensus 152 d~~g~sdP~vkv~l~~~~~~~~~k~~~~~~ 181 (985)
+..+.+|||||++++...++..+++|..++
T Consensus 314 ~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~ 343 (421)
T KOG1028|consen 314 DVGGLSDPYVKVTLLDGDKRLSKKKTSVKK 343 (421)
T ss_pred cCCCCCCccEEEEEecCCceeeeeeeeccc
Confidence 999999999999999999888888886665
No 5
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.88 E-value=8.6e-22 Score=186.52 Aligned_cols=118 Identities=18% Similarity=0.299 Sum_probs=105.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccC-CCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
|.|.|+|++|++|+..+ .|++||||++.+++++++|+++.+ ++||+|||+|.|.+. +....|.|+|||+|. +++||
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~-~~~~~l~~~V~d~d~-~~~dd 78 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLP-EGVDSIYIEIFDERA-FTMDE 78 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEec-CCCcEEEEEEEeCCC-CcCCc
Confidence 79999999999998877 799999999999999999999865 899999999999964 445689999999998 89999
Q ss_pred ccceEEEEee-ccccCcccceEEEccccccCCcceeEEEEEee
Q 001987 615 SLGHAEINFL-KHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 615 ~lG~~~i~l~-~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~l 656 (985)
+||++.|+|. .+..++..+.|++|.+..+....|.|||.+.+
T Consensus 79 ~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 79 RIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred eEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999996 57777778999999987777788999999864
No 6
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.83 E-value=3.1e-20 Score=179.04 Aligned_cols=116 Identities=19% Similarity=0.345 Sum_probs=102.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeec-----CCCCEEEEEEEecCCCCCC
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAME-----EPPSVLDVEVFDFDGPFDQ 612 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~-----~~~~~L~v~V~D~d~~~~~ 612 (985)
|+|+|++|+||+.+|..|.+||||++++++++++|+++++++||+|||.|.|.+.. .....|.|+|||+|. +++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~-~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL-LGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-cCC
Confidence 57999999999999999999999999999999999999999999999999999754 256789999999998 789
Q ss_pred CCccceEEEEeeccc--cCcccceEEEcccccc--CCcceeEEEEE
Q 001987 613 ATSLGHAEINFLKHT--STELADMWVSLEGKLA--QSAQSKVHLRI 654 (985)
Q Consensus 613 dd~lG~~~i~l~~l~--~~~~~~~w~~L~~~~~--~~~~g~l~l~~ 654 (985)
|++||++.|+|.++. .+.....|++|.++.+ ....|+|+|++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 999999999999987 5566789999987433 23579999886
No 7
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.83 E-value=8.4e-20 Score=173.37 Aligned_cols=115 Identities=30% Similarity=0.505 Sum_probs=105.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCcc
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~l 616 (985)
+|+|+|++|+||+..|.+|.+||||++++++++.+|+++++|+||.|||+|.|.+.......|.|+|||+|. +++|++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~-~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDT-GKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCC-CCCCCeE
Confidence 479999999999999999999999999999999999999999999999999999765557899999999998 7899999
Q ss_pred ceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeee
Q 001987 617 GHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 617 G~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
|++.++|.++..+...+.|++|.+ .+|+|++++.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~-----~~G~~~~~~~~~ 115 (116)
T cd08376 80 GRCEIDLSALPREQTHSLELELED-----GEGSLLLLLTLT 115 (116)
T ss_pred EEEEEeHHHCCCCCceEEEEEccC-----CCcEEEEEEEec
Confidence 999999999988888999999985 368999998764
No 8
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=1.3e-19 Score=179.12 Aligned_cols=124 Identities=23% Similarity=0.332 Sum_probs=107.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccC-CCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
.|+|+|++|+||++.|.+|.+||||+++++++..+|+++.+ ++||+|||.|+|.+..+....|.|+|||+|. +++|++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~-~~~dd~ 79 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG-PNKDEP 79 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC-CCCCCe
Confidence 37999999999999999999999999999999999999876 6999999999999755455799999999998 688999
Q ss_pred cceEEEEeeccccC----cccceEEEcccccc-------CCcceeEEEEEeeecCCC
Q 001987 616 LGHAEINFLKHTST----ELADMWVSLEGKLA-------QSAQSKVHLRIFLENNNG 661 (985)
Q Consensus 616 lG~~~i~l~~l~~~----~~~~~w~~L~~~~~-------~~~~g~l~l~~~ls~~~~ 661 (985)
||++.|+|.++..+ ...+.|++|.+..+ ...+|+|||++.+....+
T Consensus 80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~ 136 (150)
T cd04019 80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH 136 (150)
T ss_pred EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence 99999999998643 44689999987543 356799999999986544
No 9
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.82 E-value=2.1e-19 Score=171.98 Aligned_cols=118 Identities=25% Similarity=0.397 Sum_probs=107.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCcc
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~l 616 (985)
|+|+|++|+||+..|..|.+||||++++++ +.++|+++++++||+|||.|.|.+ ......|.|+|||+|. +++|++|
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v-~~~~~~l~~~v~D~d~-~~~~~~i 79 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPI-EDVTQPLYIKVFDYDR-GLTDDFM 79 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEe-cCCCCeEEEEEEeCCC-CCCCcce
Confidence 799999999999999999999999999987 678999999999999999999995 4456799999999998 7899999
Q ss_pred ceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeee
Q 001987 617 GHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 617 G~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
|++.+++.++..+...+.|++|.+..+....|.|+|.+.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence 99999999999888899999998766556789999998764
No 10
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.81 E-value=1.7e-19 Score=171.94 Aligned_cols=113 Identities=18% Similarity=0.268 Sum_probs=99.9
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCC---
Q 001987 538 LTVALVEGVN---LASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD--- 611 (985)
Q Consensus 538 L~V~v~~a~~---L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~--- 611 (985)
|.|+|++|+| |+++|..|.+||||++++++++.+|+++++++||+|||+|.|.+. .+...|.|+|||+|. ++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~-~~~~~l~v~V~d~d~-~~~~~ 79 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVY-DPCTVLTVGVFDNSQ-SHWKE 79 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEec-CCCCEEEEEEEECCC-ccccc
Confidence 7899999999 899999999999999999999999999999999999999999964 455699999999997 53
Q ss_pred ---CCCccceEEEEeeccccCcccceEEEcccc--ccCCcceeEEE
Q 001987 612 ---QATSLGHAEINFLKHTSTELADMWVSLEGK--LAQSAQSKVHL 652 (985)
Q Consensus 612 ---~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~--~~~~~~g~l~l 652 (985)
+|++||++.|+|..+..+...+.|++|.+. .+....|.|++
T Consensus 80 ~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 80 AVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 899999999999999988888999999863 23345677765
No 11
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=2.4e-19 Score=173.05 Aligned_cols=120 Identities=20% Similarity=0.360 Sum_probs=104.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCC---CCEEEEEEEecCCCCC-C
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEP---PSVLDVEVFDFDGPFD-Q 612 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~---~~~L~v~V~D~d~~~~-~ 612 (985)
.|+|+|++|++|++.|..|.+||||++++++++++|+++++++||+|||.|.|.+.... ...|.|+|||+|. ++ +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~-~~~~ 79 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR-SGRR 79 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC-CcCC
Confidence 37999999999999999999999999999999999999999999999999999964322 3589999999998 66 8
Q ss_pred CCccceEEEEeeccc-cCcccceEEEccccc-cCCcceeEEEEEeee
Q 001987 613 ATSLGHAEINFLKHT-STELADMWVSLEGKL-AQSAQSKVHLRIFLE 657 (985)
Q Consensus 613 dd~lG~~~i~l~~l~-~~~~~~~w~~L~~~~-~~~~~g~l~l~~~ls 657 (985)
+++||++.|++.++. .+.....|++|+.++ ....+|+|+|+++++
T Consensus 80 d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 80 RSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 999999999999987 456778999998753 223689999999875
No 12
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.81 E-value=4.7e-19 Score=167.83 Aligned_cols=114 Identities=19% Similarity=0.343 Sum_probs=96.8
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEECCeEEeecCccC-CCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 3 STRLYVYVLQGQDLL-----AKDSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
.+.|+|+|++|++|+ ++||||+|.+++++.||+++.+ +.||+|||+|.|.+. .....|.|+|||+| . .
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~-~~~~~l~~~V~d~d---~--~ 74 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLP-EGVDSIYIEIFDER---A--F 74 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEec-CCCcEEEEEEEeCC---C--C
Confidence 478999999999987 7999999999999999999876 899999999999994 34578999999999 4 5
Q ss_pred CCCCeeEEEEEeCcc-ccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 77 SSGELMGRVRVPVSS-IAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~-l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
++|++||++.++|.. +..+ .....||+|. +..+ ....|+|+|+++|
T Consensus 75 ~~dd~iG~~~i~l~~~~~~g---~~~~~W~~L~-~~~~---~~~~g~i~l~l~y 121 (121)
T cd04016 75 TMDERIAWTHITIPESVFNG---ETLDDWYSLS-GKQG---EDKEGMINLVFSY 121 (121)
T ss_pred cCCceEEEEEEECchhccCC---CCccccEeCc-CccC---CCCceEEEEEEeC
Confidence 789999999999964 5543 3478999998 4333 3467999999987
No 13
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.81 E-value=7.9e-20 Score=175.93 Aligned_cols=94 Identities=30% Similarity=0.515 Sum_probs=89.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
-|.|+|+|++|.||..+|..++|||||++.+|+|+.+|+++.+++||+|||.|+|. ..++...|+++|||+|. |+.||
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~-v~d~~~~lkv~VyD~D~-fs~dD 82 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFT-VKDPNTPLKVTVYDKDT-FSSDD 82 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEE-ecCCCceEEEEEEeCCC-CCccc
Confidence 57999999999999999988999999999999999999999999999999999999 67889999999999999 99999
Q ss_pred ccceEEEEeeccccCc
Q 001987 615 SLGHAEINFLKHTSTE 630 (985)
Q Consensus 615 ~lG~~~i~l~~l~~~~ 630 (985)
+||.|+|+|..+....
T Consensus 83 ~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 83 FMGEATIPLKPLLEAQ 98 (168)
T ss_pred ccceeeeccHHHHHHh
Confidence 9999999999976654
No 14
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.80 E-value=2.7e-19 Score=170.47 Aligned_cols=117 Identities=25% Similarity=0.403 Sum_probs=103.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeecc-CCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQL-QTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~-~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
|.|+|+|++|+||+..|..|.+||||++++++++.+|+++. +++||+|||.|.|.+..+....|.|+|||+|. .+ |+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-~~-~~ 78 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDK-RK-PD 78 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC-CC-Cc
Confidence 58999999999999999999999999999999999999875 58999999999999766666799999999998 55 99
Q ss_pred ccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEee
Q 001987 615 SLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~l 656 (985)
+||++.+++.++..+.....|++|..++ ...|+|+|++.|
T Consensus 79 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~--~~~G~i~l~l~f 118 (118)
T cd08681 79 LIGDTEVDLSPALKEGEFDDWYELTLKG--RYAGEVYLELTF 118 (118)
T ss_pred ceEEEEEecHHHhhcCCCCCcEEeccCC--cEeeEEEEEEEC
Confidence 9999999999987776789999998644 367899998864
No 15
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.79 E-value=5.9e-19 Score=168.30 Aligned_cols=115 Identities=21% Similarity=0.352 Sum_probs=102.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~d 613 (985)
.|+|+|++|++|+..|..|.+||||+++++ +++++|+++++++||+|||+|.|.+.......|.|+|||+|. + +|
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~-~-~~ 78 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDY-V-MD 78 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCC-C-CC
Confidence 378999999999999988999999999996 467899999999999999999999755556689999999998 6 89
Q ss_pred CccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeee
Q 001987 614 TSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 614 d~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
++||++.+++.++..+.....|++|.+ .+.|+|++++.++
T Consensus 79 ~~iG~~~~~l~~l~~g~~~~~~~~L~~----~~~g~l~~~~~~~ 118 (119)
T cd04036 79 DHLGTVLFDVSKLKLGEKVRVTFSLNP----QGKEELEVEFLLE 118 (119)
T ss_pred cccEEEEEEHHHCCCCCcEEEEEECCC----CCCceEEEEEEee
Confidence 999999999999998889999999986 3578899988764
No 16
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.79 E-value=9.5e-19 Score=169.23 Aligned_cols=119 Identities=25% Similarity=0.447 Sum_probs=105.2
Q ss_pred eEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCC
Q 001987 536 WVLTVALVEGVNLASSEM--TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~--~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~d 613 (985)
|.|+|+|++|+||+..+. .|.+||||++++++++++|+++++++||.|||.|.|.+.......|.|+|||+|. ++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~-~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDR-FAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCC-CCCC
Confidence 689999999999999998 8999999999999999999999999999999999999766567899999999998 7899
Q ss_pred CccceEEEEeecccc---CcccceEEEcccccc---CCcceeEEEEEe
Q 001987 614 TSLGHAEINFLKHTS---TELADMWVSLEGKLA---QSAQSKVHLRIF 655 (985)
Q Consensus 614 d~lG~~~i~l~~l~~---~~~~~~w~~L~~~~~---~~~~g~l~l~~~ 655 (985)
++||++.|+|.++.. ......|++|.++.. ...+|+|+|++.
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 999999999999863 345688999987522 336899999984
No 17
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.79 E-value=5.3e-19 Score=167.10 Aligned_cols=103 Identities=17% Similarity=0.275 Sum_probs=90.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------EEEEeeeccCCCCCeEeEEEEEEeecC---CCCEEEEEEEec
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-------KTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDF 606 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-------~~~kT~~~~~tlnP~Wne~f~f~v~~~---~~~~L~v~V~D~ 606 (985)
.|+|+|++|+||+..+ .|.+||||+|++.+ ++++|+++.+|+||+|||+|.|.+... ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 59999999999832 457899999999999999999997532 335799999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEcccc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (985)
|. +++|++||++.++|.++..++..+.|++|...
T Consensus 80 d~-~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 80 CF-ARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred cc-cCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 97 68899999999999999998889999999863
No 18
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.79 E-value=1.2e-18 Score=169.62 Aligned_cols=117 Identities=26% Similarity=0.354 Sum_probs=102.6
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
.|.|+|+|++|++|++.|..|.+||||+++++++.++|+++++++||.|||+|.|.+.......|.|+|||+|. +++|+
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~-~~~d~ 92 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF-FSPDD 92 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC-CCCCC
Confidence 57999999999999999999999999999999999999999999999999999999765566799999999998 78999
Q ss_pred ccceEEEEeecccc-----CcccceEEEccccccCCcceeEEEEEee
Q 001987 615 SLGHAEINFLKHTS-----TELADMWVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 615 ~lG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~~~~g~l~l~~~l 656 (985)
+||++.+++.++.. ......|..|.+ ...|+|+|++.+
T Consensus 93 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~~~g~i~l~~~~ 135 (136)
T cd08375 93 FLGRTEIRVADILKETKESKGPITKRLLLHE----VPTGEVVVKLDL 135 (136)
T ss_pred eeEEEEEEHHHhccccccCCCcEEEEecccc----ccceeEEEEEEe
Confidence 99999999999775 223345677653 567899999876
No 19
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.79 E-value=1.1e-18 Score=166.42 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=100.6
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 538 LTVALVEGVNLASSE-MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 538 L~V~v~~a~~L~~~d-~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
|+|+|++|+||++.+ .+|.+||||.++++++ ..+|+++++|+||+|||+|.|.+. .....|.|.|||+|. +++|++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~-~~~~~l~~~v~d~~~-~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP-RTFRHLSFYIYDRDV-LRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcC-CCCCEEEEEEEECCC-CCCCce
Confidence 689999999999974 4689999999999875 689999999999999999999964 445799999999998 799999
Q ss_pred cceEEEEeeccccCcccceEEEcccc-ccCCcceeEEEEEe
Q 001987 616 LGHAEINFLKHTSTELADMWVSLEGK-LAQSAQSKVHLRIF 655 (985)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~~-~~~~~~g~l~l~~~ 655 (985)
||++.++++++..+...+.|++|++. .....+|+|||.+.
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence 99999999999888888999999863 22235899999874
No 20
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.78 E-value=1.7e-18 Score=165.65 Aligned_cols=114 Identities=28% Similarity=0.492 Sum_probs=102.9
Q ss_pred eEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCC
Q 001987 536 WVLTVALVEGVNLASSEM------TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~------~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~ 609 (985)
|.|+|+|++|+||+..|. .|.+||||+++++++.++|+++++++||+|||.|.|.+.......|.|+|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~- 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP- 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC-
Confidence 579999999999999885 3789999999999999999999999999999999999766667899999999998
Q ss_pred CCCCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEe
Q 001987 610 FDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIF 655 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ 655 (985)
+ +|++||++.+++.++..+...+.|++|.+ ..+|+|||++.
T Consensus 80 ~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~----~~~G~~~~~~~ 120 (121)
T cd08391 80 D-KDDFLGRLSIDLGSVEKKGFIDEWLPLED----VKSGRLHLKLE 120 (121)
T ss_pred C-CCCcEEEEEEEHHHhcccCccceEEECcC----CCCceEEEEEe
Confidence 5 89999999999999888777899999985 36799999873
No 21
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=2e-18 Score=164.68 Aligned_cols=114 Identities=23% Similarity=0.372 Sum_probs=100.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCccc
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLG 617 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~lG 617 (985)
|+|+|++|+||+.. .+||||++++++++.+|+++++++||+|||+|.|.+.......|.|+|||+|. + ++++||
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~-~-~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDK-A-KDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCC-C-cCceee
Confidence 79999999999987 79999999999999999999999999999999999654467799999999997 5 889999
Q ss_pred eEEEEeeccccCc-----ccceEEEccccccCCcceeEEEEEeee
Q 001987 618 HAEINFLKHTSTE-----LADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 618 ~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
++.+++.++.... ..+.||+|.+..+...+|.|+|.+++.
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 9999999986532 356899999866556789999999873
No 22
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.77 E-value=4.1e-18 Score=163.56 Aligned_cols=117 Identities=28% Similarity=0.502 Sum_probs=102.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCcc
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~l 616 (985)
+|+|+|++|++|+..|.+|.+||||+++++++.++|+++++++||+|||+|.|.+.......|.|+|||+|. ++++++|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~-~~~~~~i 79 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDL-VSKNDFL 79 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCC-CCCCcEe
Confidence 489999999999999999999999999999999999999999999999999999755556789999999998 7899999
Q ss_pred ceEEEEeeccccCcccceEEEcccccc-----CCcceeEEEEE
Q 001987 617 GHAEINFLKHTSTELADMWVSLEGKLA-----QSAQSKVHLRI 654 (985)
Q Consensus 617 G~~~i~l~~l~~~~~~~~w~~L~~~~~-----~~~~g~l~l~~ 654 (985)
|++.++|.++......+.|+.|.+... ....|.|++.+
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999887777889999986322 23457777764
No 23
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.76 E-value=4.6e-18 Score=163.88 Aligned_cols=115 Identities=30% Similarity=0.556 Sum_probs=96.7
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEec-----CCCceEEEEEEecCCCCCC
Q 001987 6 LYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHN-----IDDEELVVSVFQHNDDSGL 74 (985)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~-----~~~~~L~~~V~D~d~~~~~ 74 (985)
++|+|++|+||+ .+||||+|++++++++|+++++++||+|||+|.|.++. +....|.|.|||++ +
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~---~- 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN---L- 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc---c-
Confidence 589999999998 68999999999999999999999999999999999864 36789999999999 4
Q ss_pred CCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEE
Q 001987 75 FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTIS 128 (985)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~ 128 (985)
.++|++||++.++|.++.... ......||+|.+... + ..+.+|+|+|+++
T Consensus 77 -~~~d~~iG~~~i~l~~l~~~~-~~~~~~W~~L~~~~~-~-~~~~~Gei~l~~~ 126 (126)
T cd08682 77 -LGLDKFLGQVSIPLNDLDEDK-GRRRTRWFKLESKPG-K-DDKERGEIEVDIQ 126 (126)
T ss_pred -cCCCceeEEEEEEHHHhhccC-CCcccEEEECcCCCC-C-CccccceEEEEeC
Confidence 578999999999999987432 234679999983322 2 2457899999873
No 24
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.76 E-value=2.4e-18 Score=164.40 Aligned_cols=102 Identities=25% Similarity=0.352 Sum_probs=91.9
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeec---CCCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~---~~~~~L~v~V~D~ 606 (985)
.+.|.|+|++|+||++.| .|.+||||++++. ..+.+|+++++++||+|||+|.|.+.. .....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 468999999999999999 9999999999996 357899999999999999999998622 3456999999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (985)
|. ++++++||++.|+|.++...+..+.||+|
T Consensus 91 d~-~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DS-LVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CC-CcCCcEEEEEEEeccccccCCCccceEEC
Confidence 98 79999999999999999888888999998
No 25
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.76 E-value=2.2e-18 Score=160.48 Aligned_cols=101 Identities=20% Similarity=0.286 Sum_probs=87.4
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----EEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEecC
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG----KTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFD 607 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~----~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d 607 (985)
..+.|+|+|++|+||+ ..|.+||||++++.. .+++|+++++|+||+|||+|.|.+.. -+...|.|+|||+|
T Consensus 12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD 88 (118)
T ss_pred cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence 3579999999999999 246799999999953 57899999999999999999999643 34568999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (985)
+ |++||+||++.+++.++..+.....|..|
T Consensus 89 r-fs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 89 R-FSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred C-CCCCceEEEEEEccccccCCccccchhcC
Confidence 9 89999999999999998777677788765
No 26
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.76 E-value=8.9e-18 Score=161.84 Aligned_cols=118 Identities=22% Similarity=0.337 Sum_probs=102.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC--CEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCN--GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
|.|+|++|+||+. ..|.+||||+++++ .++++|+++++++||+|||.|.|.+ ......|.|+|||+|. +++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~-~~~~~~l~~~v~d~~~-~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFEL-SPNSKELLFEVYDNGK-KSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEe-CCCCCEEEEEEEECCC-CCCCce
Confidence 5799999999998 67999999999997 4678999999999999999999995 4446789999999998 788999
Q ss_pred cceEEEEeeccccCcccceEEEccccc--cCCcceeEEEEEeeecC
Q 001987 616 LGHAEINFLKHTSTELADMWVSLEGKL--AQSAQSKVHLRIFLENN 659 (985)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~~~--~~~~~g~l~l~~~ls~~ 659 (985)
||++.+++.++..+.....|++|.+.. +....|.|++.+.+..+
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 999999999998887788999998753 34568999999976544
No 27
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.76 E-value=1.2e-17 Score=160.83 Aligned_cols=117 Identities=15% Similarity=0.283 Sum_probs=99.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
..|+|+|++|+||++. +.+||||++.+++. ..+|++ ++++||.|||.|.|.+.......|.|.|||+|. +++|+
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~-~~~d~ 78 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAK-RSKDS 78 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCC-CCCCC
Confidence 3699999999999975 47999999999874 468887 468999999999998544433589999999998 79999
Q ss_pred ccceEEEEeeccccCcccceEEEccccc--cCCcceeEEEEEeee
Q 001987 615 SLGHAEINFLKHTSTELADMWVSLEGKL--AQSAQSKVHLRIFLE 657 (985)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~--~~~~~g~l~l~~~ls 657 (985)
+||++.|+|..+..+...+.|++|.+.. +....|+|+|++.|.
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 9999999999998888889999998754 345679999999764
No 28
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=99.75 E-value=3.4e-19 Score=209.18 Aligned_cols=538 Identities=26% Similarity=0.305 Sum_probs=396.0
Q ss_pred hhhhhhcccceeeeehhhHHHHheeeeeeecCCCCCCccccCCCCCCccceeEEeeEEEEechhhhhhhhHhhhcccccC
Q 001987 445 WELASEYFWNFTVVSAGFMILYVVVHILLCEPSKRQGLEFYGLDLPDSFGELISCGILVIQLEQVFNMVGHFVRARLRKG 524 (985)
Q Consensus 445 ~~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~e~~g~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (985)
++....++..+.++......++.-++..+..+...++.++.|.++|+-.+.+.....++....+......++.+++..++
T Consensus 6 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~~~~~n~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~k~~~~ 85 (590)
T KOG1032|consen 6 QKSESPKFAKVSVLLSSPLGISVDVAMNVEESAKIQGFPFLGLNLPDVSGSLFSSKVISSDLERSSDRVDSFASAKLHKG 85 (590)
T ss_pred ccccccchhhhhcccccccccccceeccccccccccCcccccCCchhhcccccCCccccccccccccccccccccccCCC
Confidence 34445555666665555555666677777777777888889999998887777666666655555545555566665566
Q ss_pred CCCCccccCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEE
Q 001987 525 SDHGVKAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF 604 (985)
Q Consensus 525 ~d~~~~~~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~ 604 (985)
.+.+.++.+.++...+..+.+.++.....++.++||..+...++.+...+...+.+|.|++.++|.-...+-....|..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf 165 (590)
T KOG1032|consen 86 GLKGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPF 165 (590)
T ss_pred CCCcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEee
Confidence 67777777788888899999999998888889999999999999999999999999999999999955555567788888
Q ss_pred ecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeeecCCCcc---------------------
Q 001987 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVE--------------------- 663 (985)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~~~--------------------- 663 (985)
+++..+.+..-.|.+...+.-- .......|.+|.+..+..+.-+++++.++.......
T Consensus 166 ~eI~~ikk~~tag~fpn~i~i~-t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~~~~~~~~~ 244 (590)
T KOG1032|consen 166 DEITLIKKTKTAGIFPNAIEIT-TGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEVNDDQQGNV 244 (590)
T ss_pred eeeeeeehhhhccCCCcceEEe-cCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCcCccccccc
Confidence 9887566666677766655543 455677888887765554433344433322222211
Q ss_pred --------------------hhhhhhhhhhhhccccceeEeeeeEeeeeccccCcceEEEEeccccccccccCCcccccC
Q 001987 664 --------------------TIKEYLTKMEKEVGKKGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVG 723 (985)
Q Consensus 664 --------------------~l~~~l~~lek~i~~~gr~y~s~~~~~f~snif~~~~~~~i~~~di~~i~~~~~~~~~~~ 723 (985)
...++.|.+....+..|+++++....|||+++||..+.+...|++++.++..+.......
T Consensus 245 ~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~ 324 (590)
T KOG1032|consen 245 DNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPR 324 (590)
T ss_pred ccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCC
Confidence 233344555555556699999999999999999999999999999999999877643333
Q ss_pred CCeEEEEEecCCCccccCCCCcCCccccEEEEEeeccC-cchhhHHHHHHHHhccCCchhhhhhhhhhccccccc-cccc
Q 001987 724 SPSLVIILWKGRGLDARHGAKSQDEEGRLRFYFQSFVS-FNDASRTIMALWRSRTLTAYQKEQIAEEQQVQEEMS-TAAD 801 (985)
Q Consensus 724 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~F~SF~s-rd~a~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 801 (985)
.......+.-++++++++|.+.-+-+++..++|.++.+ .+..-.+++..|............+...+.+..+.. ....
T Consensus 325 ~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~~~vls~t~~~~vps~~~f~v~~~y~i~~~~~~~~~l~v~~~ 404 (590)
T KOG1032|consen 325 SGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKYFRVLSETLTPDVPSGDSFYVKTRYLISRAGSNSCKLKVSTS 404 (590)
T ss_pred ccceeEeccCCccCCCcCCCccccccceeeEEeccchhhhhhhheeccCCccccceeeeeEEEEEEecCCcceeecceeE
Confidence 34466666677889999999999888999999998877 555555555556554433333333332221111100 0011
Q ss_pred CCCCCCccccccceeEeeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEe--ccccCCCc
Q 001987 802 RGSVPNFEDAKMSKVYNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF--NRHVSIFG 879 (985)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~--~~~~~~~~ 879 (985)
..-.-..-+..+.++.....++.++.++.+|.+++-....+++-++..+.-++|+.+.+++.+|+.+|+- ++++++..
T Consensus 405 V~~~~~sw~~~~~~~~~~~~k~lv~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~i~~~~ 484 (590)
T KOG1032|consen 405 VEWTKSSWDVPVSEIGSNTLKDLVEILEKLLENGEELAKNQEKEDELTYEGSPWEVEKPGGTVRQLSYKEVWNKPISPDK 484 (590)
T ss_pred EEeccCchhhccccccccchhhHHHHHHHHHhccHHHHHhhcccccccccCCCccccCCCceeeeecccccccccccccc
Confidence 1111112344566666667788888888888888888888888888888888999899999999999997 89999999
Q ss_pred eeeeeEEEEeeccCCCcEEEEEEEeeCCCCCCCeEEEEEEEE-EEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHH
Q 001987 880 GEVTCTQQKSPLASGEGWIVNEVMSLHDVPFDDHFRVHFRYE-IEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITE 958 (985)
Q Consensus 880 ~~~~~~q~~~~~~~~~~~vv~~~~~~~dVPygd~F~v~~ry~-i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~ 958 (985)
.+++..|+..+......|++++.+.+||||||++|.||.||. +.........+++.++..|.|++..+++-..-+.+.-
T Consensus 485 ~~~~~~~i~~l~~~~~~~l~~~i~~l~~~~~g~~~~~h~r~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~~~~k~~~r 564 (590)
T KOG1032|consen 485 REVTLLQVVVLVPLKILWLLNTILFLHDVPFGSYFEVHERYREALDETSKVKTTLVWVSFRIEWLKDIKMEARKIKQILR 564 (590)
T ss_pred ccceeEEEEEEehhhhhHHHHHHhhccCCCCccceeeehhhhhhhcccchhhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999988888999999999999999999999999994 3333443467788888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccC
Q 001987 959 KFTHRLKEMIELVEREILFATQQDA 983 (985)
Q Consensus 959 g~~~~~~~~~~~~~~~i~~~~~~~~ 983 (985)
..++..+.++.+|++.-+.+++.|.
T Consensus 565 ~~~~~l~~~~~~l~~~~~~~~~~d~ 589 (590)
T KOG1032|consen 565 NDQDLLEVLFSLLEKLSQSNSQLDQ 589 (590)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccC
Confidence 8888888888888888777766653
No 29
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.75 E-value=1.3e-17 Score=159.25 Aligned_cols=114 Identities=27% Similarity=0.578 Sum_probs=99.0
Q ss_pred EEEEEEEeecCC--CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCCeeE
Q 001987 6 LYVYVLQGQDLL--AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMG 83 (985)
Q Consensus 6 L~V~V~~Ar~L~--~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~~lG 83 (985)
|+|+|++|+||+ .+||||++++++++.+|+++++++||.|||+|.|.+..+....|.|+|||+| + . ++++||
T Consensus 2 L~V~Vi~a~~L~~~~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d---~--~-~~~~lG 75 (121)
T cd08378 2 LYVRVVKARGLPANSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKD---K--A-KDDFLG 75 (121)
T ss_pred EEEEEEEecCCCcccCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCC---C--C-cCceee
Confidence 899999999999 8999999999999999999999999999999999986667899999999999 4 2 889999
Q ss_pred EEEEeCccccccC--CCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 84 RVRVPVSSIAAED--NHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 84 ~~~i~L~~l~~~~--~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
++.++|.++.... +......||+|.+. .+ .+.+|+|+|++.|
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~-~~---~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDK-KG---GRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCC-CC---CccceEEEEEEEe
Confidence 9999999997642 22346799999843 22 4578999999987
No 30
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.75 E-value=1.8e-17 Score=163.85 Aligned_cols=127 Identities=34% Similarity=0.576 Sum_probs=104.8
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccC-CCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
.|+|+|++|+||+ .+||||+|++++++.+|+++.+ ++||+|||+|.|.+.++....|.|.|||++ . .+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~---~--~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRV---G--PN 75 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEec---C--CC
Confidence 3899999999997 7999999999999999999977 699999999999996666789999999999 4 56
Q ss_pred CCCeeEEEEEeCccccccC-CCCCCCeEEEeecCCC---CCCCCccccEEEEEEEEEecCCee
Q 001987 78 SGELMGRVRVPVSSIAAED-NHMLPPTWFSLETPKT---RKFTNKDCGKILLTISLNGKGHNL 136 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~-~~~~~~~W~~L~~~~~---~~~~~~~~G~I~lsl~~~~~~~~l 136 (985)
++++||++.+||.++..+. .......||+|.++.. ++...+.+|+|+|.++|.+..+.+
T Consensus 76 ~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~ 138 (150)
T cd04019 76 KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVL 138 (150)
T ss_pred CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEe
Confidence 8999999999999987642 2345689999995532 112246789999999998665443
No 31
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.75 E-value=1.6e-17 Score=158.78 Aligned_cols=116 Identities=22% Similarity=0.383 Sum_probs=99.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEE-EEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCcc
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~-~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~l 616 (985)
|.|+|++|++|++.|.+|.+||||++.++++. .+|+++++++||+|||.|.|.+ ......|.|+|||+|. +++|++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~-~~~~~~l~v~v~d~~~-~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHL-PPGFHTVSFYVLDEDT-LSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEee-CCCCCEEEEEEEECCC-CCCCCEE
Confidence 78999999999999999999999999998764 6999999999999999999995 4445799999999998 7999999
Q ss_pred ceEEEEeeccccC-cccceEEEcccc-ccCCcceeEEEEEe
Q 001987 617 GHAEINFLKHTST-ELADMWVSLEGK-LAQSAQSKVHLRIF 655 (985)
Q Consensus 617 G~~~i~l~~l~~~-~~~~~w~~L~~~-~~~~~~g~l~l~~~ 655 (985)
|++.+++..+..+ ...+.|++|.+. ......|+|+|.+.
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999887653 347889999863 33345789988764
No 32
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.75 E-value=8.9e-18 Score=163.93 Aligned_cols=106 Identities=23% Similarity=0.294 Sum_probs=93.9
Q ss_pred CeEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC--C---EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEE-ecC
Q 001987 535 GWVLTVALVEGVNLASSE-MTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF-DFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d-~~g~~DPyv~v~~~--~---~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~-D~d 607 (985)
.+.|.|+|++|+||++.+ ..|.+||||++++. + .++||+++++|+||+|||+|.|.+. .....|.|+|| |+|
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 368999999999999874 67899999999994 2 3789999999999999999999965 66779999999 688
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (985)
. ++++++||++.|+|+++..+.....||+|.+..
T Consensus 107 ~-~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 107 R-MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred C-CCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 7 789999999999999998787888999998743
No 33
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.75 E-value=2.1e-17 Score=165.04 Aligned_cols=119 Identities=21% Similarity=0.275 Sum_probs=101.7
Q ss_pred CeEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCEE-EEeeeccCCCCCeE
Q 001987 535 GWVLTVALVEGVNLASSE------------------------------MTGLSDPYVVFTCNGKT-RTSSVQLQTCDPQW 583 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d------------------------------~~g~~DPyv~v~~~~~~-~kT~~~~~tlnP~W 583 (985)
.|.|.|+|++|++|+.+| ..|.+||||+|++++.+ .+|+++++++||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 479999999999999987 35779999999999755 69999999999999
Q ss_pred eEEEEEEeecCCCCEEEEEEEecCCCCCCCCccceEEEEeeccccCcccceEEEcccccc--CCcceeEEEEEee
Q 001987 584 HDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLA--QSAQSKVHLRIFL 656 (985)
Q Consensus 584 ne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~--~~~~g~l~l~~~l 656 (985)
||+|.|.+ ..+...|.|.|||+|. ++ +++||++.|++.++..+...+.|++|.+..+ ....|+|||++.|
T Consensus 86 nE~F~~~~-~~~~~~l~~~V~d~d~-~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYC-AHYASHVEFTVKDNDV-VG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEc-cCCCCEEEEEEEeCCC-cC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999985 4556789999999997 54 6899999999999988888899999987432 2346789998865
No 34
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.75 E-value=1.7e-17 Score=160.00 Aligned_cols=118 Identities=22% Similarity=0.433 Sum_probs=102.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~d 613 (985)
.|+|+|++|++|+..+.+|.+||||++.+++ +..+|+++++++||.|||+|.|.+.......|.|+|||+|. ++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~-~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSF-VGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCC-CCCC
Confidence 6899999999999999999999999999863 46899999999999999999999655556799999999998 6899
Q ss_pred CccceEEEEeecccc---CcccceEEEccccccCCcceeEEEEEeeecCCC
Q 001987 614 TSLGHAEINFLKHTS---TELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (985)
Q Consensus 614 d~lG~~~i~l~~l~~---~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~ 661 (985)
++||++.++|..+.. +...+.|++|.+ +|+++|++.+...++
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~------~g~i~l~~~~~~~~~ 125 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT------QGRLLLRVSMEGERD 125 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC------CCeEEEEEEEeeecc
Confidence 999999999987543 345788999984 689999998877654
No 35
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.74 E-value=2.5e-17 Score=157.11 Aligned_cols=117 Identities=25% Similarity=0.437 Sum_probs=102.8
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
|.|+|+|++|+||+..+..+.+||||++++++...+|+++++++||.|||+|.|.+ ......|.|+|||+|. ++++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~-~~~~~~l~~~v~d~~~-~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPI-KDIHDVLEVTVYDEDK-DKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEe-cCcCCEEEEEEEECCC-CCCCce
Confidence 68999999999999999999999999999999999999999999999999999995 4556799999999998 789999
Q ss_pred cceEEEEeeccccCcccceEEEccccc-cCCcceeEEEEEee
Q 001987 616 LGHAEINFLKHTSTELADMWVSLEGKL-AQSAQSKVHLRIFL 656 (985)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~~~-~~~~~g~l~l~~~l 656 (985)
||++.+++.++..+ ...|++|.... ....+|+|+|.+.+
T Consensus 79 iG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence 99999999998654 46899998653 33468999998754
No 36
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=1.6e-17 Score=161.86 Aligned_cols=118 Identities=21% Similarity=0.339 Sum_probs=100.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-------EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-------TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~ 609 (985)
.|+|+|++|+||+..|..|.+||||++++++. ..+|+++++++||+|||+|.|.+ ......|.|+|||+|.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~-~~~~~~l~~~v~d~~~- 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRV-NPREHRLLFEVFDENR- 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEE-cCCCCEEEEEEEECCC-
Confidence 37999999999999999999999999999754 57999999999999999999995 4446789999999998
Q ss_pred CCCCCccceEEEEeeccccCcc------cceEEEccccc-cCCcceeEEEEEee
Q 001987 610 FDQATSLGHAEINFLKHTSTEL------ADMWVSLEGKL-AQSAQSKVHLRIFL 656 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~------~~~w~~L~~~~-~~~~~g~l~l~~~l 656 (985)
+++|++||++.+++.++..... ...|++|++.. .....|.|+|.+.+
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 7899999999999999876543 45899999642 22358999999865
No 37
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.74 E-value=1.1e-17 Score=164.41 Aligned_cols=102 Identities=24% Similarity=0.317 Sum_probs=89.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeec--------------C-CC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAME--------------E-PP 596 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~--------------~-~~ 596 (985)
.|+|+|++|+||+. .+|.+||||++++.+ ++++|+++++|+||+|||.|.|.+.. + ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37999999999998 579999999999975 67899999999999999999999741 1 23
Q ss_pred CEEEEEEEecCCCCCCCCccceEEEEeeccccC-cccceEEEcccc
Q 001987 597 SVLDVEVFDFDGPFDQATSLGHAEINFLKHTST-ELADMWVSLEGK 641 (985)
Q Consensus 597 ~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~-~~~~~w~~L~~~ 641 (985)
..|.|.|||+|. +++|+|||++.|+|..+..+ .....||+|.+.
T Consensus 79 ~~L~i~V~d~~~-~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 79 LELRVDLWHASM-GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEEcCCC-CCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 579999999998 68999999999999998876 667899999864
No 38
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.74 E-value=3.4e-17 Score=159.16 Aligned_cols=115 Identities=24% Similarity=0.436 Sum_probs=101.5
Q ss_pred CeEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCEE-EEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEE
Q 001987 535 GWVLTVALVEGVNLASSEMT----------GLSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEV 603 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~----------g~~DPyv~v~~~~~~-~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V 603 (985)
.|.|+|+|++|++|+..|.. |.+||||++.++++. .+|+++++++||.|||+|.|.+. ....|.|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~~v 80 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLELTV 80 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEEEE
Confidence 37899999999999998863 689999999999865 69999999999999999999964 557999999
Q ss_pred EecCCCCCCCCccceEEEEeecccc--CcccceEEEccccccCCcceeEEEEEeeec
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHTS--TELADMWVSLEGKLAQSAQSKVHLRIFLEN 658 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~--~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~ 658 (985)
||+|. ++++++||++.++|.++.. +...+.|++|. .+|+|+|++.+.+
T Consensus 81 ~d~~~-~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------~~G~l~l~~~~~~ 130 (132)
T cd04014 81 FHDAA-IGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------PQGKLHVKIELKG 130 (132)
T ss_pred EeCCC-CCCCceEEEEEEEhHHhcccCCCcccEEEEcc------CCcEEEEEEEEec
Confidence 99998 7899999999999999887 56789999998 4689999998765
No 39
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.73 E-value=1.5e-17 Score=154.89 Aligned_cols=101 Identities=26% Similarity=0.307 Sum_probs=90.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCcc
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~l 616 (985)
.|.|+|++|+||+..+..|.+||||+++++++.++|+++++++||+|||.|.|.+..+....|.|+|||++. +++|
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~----~~~i 76 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT----GKSL 76 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC----CCcc
Confidence 378999999999999989999999999999999999999999999999999999766567799999999873 7899
Q ss_pred ceEEEEeeccccCc--ccceEEEcccc
Q 001987 617 GHAEINFLKHTSTE--LADMWVSLEGK 641 (985)
Q Consensus 617 G~~~i~l~~l~~~~--~~~~w~~L~~~ 641 (985)
|++.++|.++.... ..+.||+|.++
T Consensus 77 G~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 77 GSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEEHHHhhccccceeeeeEecCCC
Confidence 99999999986543 57899999863
No 40
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.73 E-value=3.1e-17 Score=158.36 Aligned_cols=116 Identities=28% Similarity=0.463 Sum_probs=97.5
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecC---CCceEEEEEEecCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI---DDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~---~~~~L~~~V~D~d~~~~~~ 75 (985)
+|.|+|++|+||+ .+||||+|+++++++||+++++++||.|||+|.|.+..+ ....|.|+|||.+ +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~---~-- 75 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDR---R-- 75 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCC---C--
Confidence 5899999999998 689999999999999999999999999999999998532 3478999999998 4
Q ss_pred CC-CCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEE
Q 001987 76 GS-SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 76 ~~-~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
.+ +++|||++.++|.++.... .....||+|+++ ... ...+|+|+|++.+.
T Consensus 76 ~~~~d~~lG~v~i~l~~l~~~~--~~~~~w~~L~~~-~~~--~~~~G~l~l~~~~~ 126 (127)
T cd04022 76 SGRRRSFLGRVRISGTSFVPPS--EAVVQRYPLEKR-GLF--SRVRGEIGLKVYIT 126 (127)
T ss_pred CcCCCCeeeEEEEcHHHcCCCC--CccceEeEeeeC-CCC--CCccEEEEEEEEEc
Confidence 44 7999999999999998432 346799999943 222 45789999999874
No 41
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.73 E-value=1.4e-17 Score=155.11 Aligned_cols=97 Identities=18% Similarity=0.343 Sum_probs=84.5
Q ss_pred CcEEEEEEEEeecCC---CCCcEEEEEECC----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCCCC
Q 001987 3 STRLYVYVLQGQDLL---AKDSYVKVQIGK----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDSG 73 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~---~~DPyv~v~l~~----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~~~ 73 (985)
.++|.|+|++|+||+ .+||||+|++.. .+.+|+++++|+||+|||+|.|+|+ +.....|.|+|||+| +
T Consensus 13 ~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D---r 89 (118)
T cd08677 13 KAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD---R 89 (118)
T ss_pred CCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC---C
Confidence 578999999999998 799999999974 4689999999999999999999987 678899999999999 6
Q ss_pred CCCCCCCeeEEEEEeCccccccCCCCCCCeEEEe
Q 001987 74 LFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (985)
Q Consensus 74 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (985)
.+++++||++.+++.++..... ...|..|
T Consensus 90 --fs~~d~IG~v~l~l~~~~~~~~---~~~W~~~ 118 (118)
T cd08677 90 --FSRHSTLGELRLKLADVSMMLG---AAQWVDL 118 (118)
T ss_pred --CCCCceEEEEEEccccccCCcc---ccchhcC
Confidence 5899999999999998865422 4467543
No 42
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.73 E-value=4.6e-17 Score=157.01 Aligned_cols=115 Identities=23% Similarity=0.443 Sum_probs=98.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCC-------
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP------- 609 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~------- 609 (985)
.|+|+|++|++|+..|..|.+||||+++++++..+|+++++++||.|||.|.|.+ ..+...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~-~~~~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFEC-HNSSDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEe-cCCCCEEEEEEEECCCCcccccce
Confidence 5899999999999999999999999999999999999999999999999999985 34467899999999951
Q ss_pred ---CCCCCccceEEEEeeccccCcccceEEEccccccC-CcceeEEEEE
Q 001987 610 ---FDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRI 654 (985)
Q Consensus 610 ---~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~ 654 (985)
.+.+++||++.+++.++. ...+.|++|.+..+. ..+|+|.|++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 146899999999999874 446899999975443 4588888874
No 43
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.73 E-value=2.1e-17 Score=158.65 Aligned_cols=105 Identities=24% Similarity=0.340 Sum_probs=92.6
Q ss_pred CCeEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEe
Q 001987 534 DGWVLTVALVEGVNLASSEM-TGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~-~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D 605 (985)
..+.|.|+|++|+||++.|. .|.+||||++++. ..++||+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d 92 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWH 92 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 45689999999999999875 5899999999994 2467999999999999999999996432 35689999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCcccceEEEcc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
+|. ++++++||++.|+|.++...+..+.|++|.
T Consensus 93 ~~~-~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 93 YDR-FGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCC-CCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 998 799999999999999999888899999984
No 44
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.73 E-value=1.6e-17 Score=159.57 Aligned_cols=104 Identities=24% Similarity=0.387 Sum_probs=92.1
Q ss_pred CeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMT-GLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~-g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~ 606 (985)
.+.|.|+|++|+||+++|.. |.+||||++++. ..+++|+++++++||+|||+|.|.+.. .....|.|+|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 45899999999999999976 899999999994 245799999999999999999999642 2346899999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEcc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
|. ++++++||++.|+|.++...+....|++|+
T Consensus 94 ~~-~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 94 DS-LGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CC-CCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 98 799999999999999998887888999984
No 45
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.72 E-value=6e-17 Score=157.98 Aligned_cols=117 Identities=22% Similarity=0.360 Sum_probs=98.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecC---------CCCEEEEEEEecC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE---------PPSVLDVEVFDFD 607 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~---------~~~~L~v~V~D~d 607 (985)
.|+|+|++|++|+.+|..|.+||||++++++++.+|+++++|+||.|||.|.|.+... ....|.|+|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 6899999999999999999999999999999999999999999999999999985322 1257999999999
Q ss_pred CCCCCCCccceEEE-Eeecccc---CcccceEEEccccccCCcceeEEEEEee
Q 001987 608 GPFDQATSLGHAEI-NFLKHTS---TELADMWVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 608 ~~~~~dd~lG~~~i-~l~~l~~---~~~~~~w~~L~~~~~~~~~g~l~l~~~l 656 (985)
. +++|++||++.+ ++..+.. ......|++|...+ ...|+|.|.+.+
T Consensus 82 ~-~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~--~~~Geil~~~~~ 131 (135)
T cd04017 82 S-VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG--QSAGELLAAFEL 131 (135)
T ss_pred C-CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC--CchhheeEEeEE
Confidence 8 789999999997 4444433 35678999998543 367889988865
No 46
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.72 E-value=7.3e-17 Score=154.38 Aligned_cols=114 Identities=29% Similarity=0.532 Sum_probs=97.7
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECC-eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
+|+|+|++|+||+ .+||||++.+++ ..++|+++++++||.|||+|.|.+.. ....|.|+|||++ . .+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~-~~~~l~~~v~D~d---~--~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIED-VTQPLYIKVFDYD---R--GL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecC-CCCeEEEEEEeCC---C--CC
Confidence 5899999999998 799999999987 56899999999999999999999843 4688999999999 4 57
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
++++||++.++|.++..+ .....|++|.++.. .+..|+|+|.++|.|
T Consensus 75 ~~~~iG~~~~~l~~l~~~---~~~~~~~~L~~~~~----~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 TDDFMGSAFVDLSTLELN---KPTEVKLKLEDPNS----DEDLGYISLVVTLTP 121 (121)
T ss_pred CCcceEEEEEEHHHcCCC---CCeEEEEECCCCCC----ccCceEEEEEEEECC
Confidence 999999999999999865 24678999984332 356899999999854
No 47
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.72 E-value=3.6e-17 Score=152.54 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=83.6
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecC-CCCEEEEEEEecCCCC
Q 001987 536 WVLTVALVEGVNLASSEMT----GLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDFDGPF 610 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~----g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~-~~~~L~v~V~D~d~~~ 610 (985)
|+|.|+|++|++|++.|.. +.+||||+|+++++++||+++++++||+|||.|.|.+... ....|.|+|||+|. +
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~-~ 79 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDK-F 79 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCC-C
Confidence 6899999999999998742 3589999999999999999999999999999999997543 34589999999998 7
Q ss_pred CCCCccceEEEEeeccccCc
Q 001987 611 DQATSLGHAEINFLKHTSTE 630 (985)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~ 630 (985)
++|++||++.++|.++..+.
T Consensus 80 ~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 80 SFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCcceEEEEEEHHHHHhhC
Confidence 99999999999999987654
No 48
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.72 E-value=2.3e-17 Score=155.14 Aligned_cols=100 Identities=21% Similarity=0.372 Sum_probs=88.6
Q ss_pred eEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEeecC---CCCEEEEEEEecCC
Q 001987 536 WVLTVALVEGVNLASSEMT-GLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDFDG 608 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~~~---~~~~L~v~V~D~d~ 608 (985)
|+|+|+|++|++|+..|.. |.+||||++++. ....+|+++++++||+|||.|.|.+... ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999988 999999999984 3568999999999999999999986443 45689999999998
Q ss_pred CCCCCCccceEEEEeeccccCcccceEEEcc
Q 001987 609 PFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
+++|++||++.+++.++. ....|+++.
T Consensus 81 -~~~dd~lG~~~i~l~~l~---~~~~~~~~~ 107 (111)
T cd04041 81 -FTADDRLGRVEIDLKELI---EDRNWMGRR 107 (111)
T ss_pred -CCCCCcceEEEEEHHHHh---cCCCCCccc
Confidence 799999999999999987 356788886
No 49
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.72 E-value=1.2e-16 Score=153.71 Aligned_cols=117 Identities=21% Similarity=0.411 Sum_probs=96.8
Q ss_pred cEEEEEEEEeecCC---CCCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL---AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSG 79 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~---~~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d 79 (985)
..|+|+|++|+||+ .+||||+|++++.+ .+|+++ +++||.|||+|.|.+..+....+.|.|||.+ + .+++
T Consensus 4 ~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~---~--~~~d 77 (126)
T cd08400 4 RSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKA---K--RSKD 77 (126)
T ss_pred eEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECC---C--CCCC
Confidence 47999999999999 78999999998754 789875 6899999999999864444468899999999 4 5799
Q ss_pred CeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 80 ELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 80 ~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
++||++.+||.++..+. ....||+|. +... ......|+|+|+++|.+
T Consensus 78 ~~iG~v~i~l~~l~~~~---~~~~W~~L~-~~~~-~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 78 SEIAEVTVQLSKLQNGQ---ETDEWYPLS-SASP-LKGGEWGSLRIRARYSH 124 (126)
T ss_pred CeEEEEEEEHhHccCCC---cccEeEEcc-cCCC-CCCCcCcEEEEEEEEEc
Confidence 99999999999988652 367899998 4332 12567899999999965
No 50
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.72 E-value=3.3e-17 Score=153.87 Aligned_cols=102 Identities=20% Similarity=0.391 Sum_probs=90.8
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCEEEEeeeccCCCCCeE-eEEEEEEeecC--CCCEEEEEEEecCCCCCCC
Q 001987 538 LTVALVEGVNLASSEM-TGLSDPYVVFTCNGKTRTSSVQLQTCDPQW-HDILEFDAMEE--PPSVLDVEVFDFDGPFDQA 613 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~~~~~tlnP~W-ne~f~f~v~~~--~~~~L~v~V~D~d~~~~~d 613 (985)
|+|+|++|+||+..+. .|.+||||++++++++++|+++++++||.| ||.|.|.+... ....|.|+|||+|. +++|
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~-~~~~ 79 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT-YSAN 79 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC-CCCC
Confidence 5899999999999884 789999999999999999999999999999 99999996433 24689999999998 7999
Q ss_pred CccceEEEEeecccc---CcccceEEEccc
Q 001987 614 TSLGHAEINFLKHTS---TELADMWVSLEG 640 (985)
Q Consensus 614 d~lG~~~i~l~~l~~---~~~~~~w~~L~~ 640 (985)
++||++.+++.++.. ....+.||+|..
T Consensus 80 ~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 80 DAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 999999999999876 345788999964
No 51
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.72 E-value=5.1e-17 Score=154.75 Aligned_cols=111 Identities=25% Similarity=0.468 Sum_probs=95.4
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccC-CCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
+.|+|+|++|+||+ .+||||+|++++.+++|+++++ ++||.|||+|.|.++....+.|.|+|||++ . .
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~---~--~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDD---K--R 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCC---C--C
Confidence 57999999999998 7899999999998999998754 799999999999997656789999999999 4 3
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
+ +++||++.+++.++.... ....|++|.++ .+..|+|+|.++|
T Consensus 76 ~-~~~iG~~~~~l~~~~~~~---~~~~w~~L~~~------~~~~G~i~l~l~f 118 (118)
T cd08681 76 K-PDLIGDTEVDLSPALKEG---EFDDWYELTLK------GRYAGEVYLELTF 118 (118)
T ss_pred C-CcceEEEEEecHHHhhcC---CCCCcEEeccC------CcEeeEEEEEEEC
Confidence 4 899999999999987643 35789999832 3468999999986
No 52
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=1e-16 Score=154.67 Aligned_cols=117 Identities=19% Similarity=0.346 Sum_probs=103.6
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEecCCCCCCCCccceE
Q 001987 542 LVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFDGPFDQATSLGHA 619 (985)
Q Consensus 542 v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d~~~~~dd~lG~~ 619 (985)
|++|+||+. ..|.+||||++++++.+++|+++++++||+|||+|.|.+.. .....|.|+|||+|. +++|++||++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-~~~d~~iG~~ 78 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-VGRNRLIGSA 78 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-CCCCceEEEE
Confidence 789999998 68899999999999999999999999999999999999643 356799999999998 7899999999
Q ss_pred EEEeeccccCcccceEEEccccccCCcceeEEEEEeeecCCC
Q 001987 620 EINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (985)
Q Consensus 620 ~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~ 661 (985)
.++|.++..+.....|++|....+....|+|++.+.+....+
T Consensus 79 ~~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 79 TVSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 999999988888899999987655556789999998766644
No 53
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.71 E-value=5e-17 Score=156.22 Aligned_cols=104 Identities=25% Similarity=0.529 Sum_probs=93.8
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGP 609 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d~~ 609 (985)
.|.|+|+|++|+||++.|..|.+||||++++. .+.++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~- 93 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ- 93 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC-
Confidence 56899999999999999999999999999993 4578999999999999999999996432 35689999999998
Q ss_pred CCCCCccceEEEEeeccccCcccceEEEcc
Q 001987 610 FDQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
+++|++||++.|+|.++..++..+.|++|.
T Consensus 94 ~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 94 FSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCceeEEEEEecccccCCCCcceEEECc
Confidence 789999999999999998888889999986
No 54
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.71 E-value=1e-16 Score=156.04 Aligned_cols=113 Identities=26% Similarity=0.535 Sum_probs=96.4
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
+.|+|+|++|++|+ .+||||+++++++.++|+++++++||.|||+|.|.+.++....|.|+|||.+ . .+
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d---~--~~ 89 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD---F--FS 89 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC---C--CC
Confidence 68999999999998 7899999999999999999999999999999999997667789999999999 4 57
Q ss_pred CCCeeEEEEEeCccccccCCC--CCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 78 SGELMGRVRVPVSSIAAEDNH--MLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~--~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
+|++||++.++|.++...... .....|..|. ...+|+|+|.+.+
T Consensus 90 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~--------~~~~g~i~l~~~~ 135 (136)
T cd08375 90 PDDFLGRTEIRVADILKETKESKGPITKRLLLH--------EVPTGEVVVKLDL 135 (136)
T ss_pred CCCeeEEEEEEHHHhccccccCCCcEEEEeccc--------cccceeEEEEEEe
Confidence 899999999999999863221 2233455554 4568999999886
No 55
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.71 E-value=9.3e-17 Score=153.18 Aligned_cols=112 Identities=25% Similarity=0.412 Sum_probs=92.0
Q ss_pred EEEEEEEEeec---CC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCC
Q 001987 5 RLYVYVLQGQD---LL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 5 ~L~V~V~~Ar~---L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~ 75 (985)
.|.|+|++|+| |. .+||||+|++++++.||+++++++||+|||+|.|.+.. ....|.|+|||++ .+.
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~-~~~~l~v~V~d~d---~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD-PCTVLTVGVFDNS---QSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecC-CCCEEEEEEEECC---Ccc
Confidence 48999999999 55 78999999999999999999999999999999999853 3458999999998 310
Q ss_pred ----CCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEE
Q 001987 76 ----GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILL 125 (985)
Q Consensus 76 ----~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l 125 (985)
..+|++||++.++|..+..+. ....||+|.....+. .+..|+|.+
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~--~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDR---VYAHSYPLLSLNPSG--VKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCC---EEeeEEEeEeCCCCC--ccCCcEEEe
Confidence 138999999999999998653 357899999443322 556788875
No 56
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.71 E-value=1.3e-16 Score=154.28 Aligned_cols=120 Identities=21% Similarity=0.393 Sum_probs=101.1
Q ss_pred cEEEEEEEEeecCC--------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL--------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~--------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~ 75 (985)
+.|+|+|++|+||+ .+||||+|++++.+++|+++++++||.|||+|.|.+..+..+.|.|+|||++ .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~---~-- 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKD---R-- 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECC---C--
Confidence 57999999999997 4799999999999999999999999999999999996667789999999999 4
Q ss_pred CCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
.+++++||++.++|.++...+.......||+|.+...+ ......|+|+|.++|
T Consensus 76 ~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~-~~~~~~G~i~l~~~~ 128 (128)
T cd04024 76 FAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPG-KTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCcceEEEEEHHHhhcccccCccceeEEccCcccC-ccccccceEEEEEEC
Confidence 56899999999999998753222346799999844332 235679999999875
No 57
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.71 E-value=7.4e-17 Score=155.06 Aligned_cols=105 Identities=26% Similarity=0.450 Sum_probs=93.8
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecCC
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDG 608 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d~ 608 (985)
..+.|+|+|++|+||++.|..|.+||||++++. .+.++|+++++++||+|||+|.|.+... ....|.|+|||+|.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 356899999999999999999999999999984 3578999999999999999999996432 34689999999998
Q ss_pred CCCCCCccceEEEEeeccccCcccceEEEcc
Q 001987 609 PFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
++++++||++.++|.++..+...+.|++|+
T Consensus 94 -~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 94 -FSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred -CCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 799999999999999998888889999986
No 58
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=1.1e-16 Score=150.50 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=86.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
+.|.|+|++|++|+..+ ..||||+|++++++.+|++.++ .||.|||+|.|.+ ......|.|+|||+|. ..||+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~-~~~~~~L~v~V~dkd~--~~DD~ 74 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEI-NRLDLGLVIELWNKGL--IWDTL 74 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEE-cCCCCEEEEEEEeCCC--cCCCc
Confidence 58999999999997655 5699999999999999999977 5999999999995 5566679999999996 48999
Q ss_pred cceEEEEeeccccCccc--ceEEEccc
Q 001987 616 LGHAEINFLKHTSTELA--DMWVSLEG 640 (985)
Q Consensus 616 lG~~~i~l~~l~~~~~~--~~w~~L~~ 640 (985)
||++.|+|.++...... ..||+|++
T Consensus 75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 75 VGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred eEEEEEEhHHcccCCCCCCCccEecCh
Confidence 99999999998765544 89999986
No 59
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.70 E-value=6.2e-17 Score=155.74 Aligned_cols=104 Identities=19% Similarity=0.290 Sum_probs=90.3
Q ss_pred CeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMT-GLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~-g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~ 606 (985)
.+.|.|+|++|+||++.|.. |.+||||++++. ..++||+++++++||+|||+|.|.+... ....|.|.|||+
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 46899999999999999975 999999999994 3477999999999999999999996432 356999999999
Q ss_pred CCCCCCCCccceEEEEeeccccC---cccceEEEcc
Q 001987 607 DGPFDQATSLGHAEINFLKHTST---ELADMWVSLE 639 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~---~~~~~w~~L~ 639 (985)
|. ++++++||++.|+|.++... .....||+|.
T Consensus 94 ~~-~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 94 RT-LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CC-CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 98 79999999999999998554 3678899984
No 60
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.70 E-value=2.6e-16 Score=151.58 Aligned_cols=117 Identities=21% Similarity=0.320 Sum_probs=100.0
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
.++|+|+|++|++|+..|..|.+||||++.++++.++|+++++++||+|||.|.|.+ ......|.|+|||+|. + +|+
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~-~~~~~~l~i~V~d~~~-~-~d~ 78 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYR-KKPRSPIKIQVWNSNL-L-CDE 78 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEe-cCCCCEEEEEEEECCC-C-CCC
Confidence 468999999999999999999999999999999999999999999999999999984 4567799999999997 4 589
Q ss_pred ccceEEEEeeccccCcccceEEEcccc---ccCCcceeEEEEEee
Q 001987 615 SLGHAEINFLKHTSTELADMWVSLEGK---LAQSAQSKVHLRIFL 656 (985)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~~---~~~~~~g~l~l~~~l 656 (985)
+||++.+++..+. .....|++|... ......|.|.+++.+
T Consensus 79 ~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~ 121 (126)
T cd04046 79 FLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTS 121 (126)
T ss_pred ceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence 9999999998753 345678888632 333457889888864
No 61
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.70 E-value=1.4e-16 Score=151.97 Aligned_cols=112 Identities=19% Similarity=0.396 Sum_probs=94.6
Q ss_pred EEEEEEEeecCC-------CCCcEEEEEECCe-EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCC
Q 001987 6 LYVYVLQGQDLL-------AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 6 L~V~V~~Ar~L~-------~~DPyv~v~l~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
|.|+|++|+||+ .+||||.|+++++ .++|+++++|+||.|||+|.|.++ .....|.|.|||++ + .+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~-~~~~~l~~~v~d~~---~--~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIP-RTFRHLSFYIYDRD---V--LR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcC-CCCCEEEEEEEECC---C--CC
Confidence 789999999998 4799999999865 589999999999999999999994 33579999999999 5 57
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
++++||++.++|.++..+ .....||+|+ +.... .+.+|+|+|++++
T Consensus 76 ~~~~iG~~~i~l~~l~~~---~~~~~w~~L~-~~~~~--~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKY---YGKDTWFPLQ-PVDAD--SEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCC---CCcEeeEEEE-ccCCC--CcccEEEEEEEEC
Confidence 899999999999999864 2468899999 43322 3468999999864
No 62
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.69 E-value=3.1e-16 Score=148.88 Aligned_cols=109 Identities=27% Similarity=0.519 Sum_probs=96.0
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
.|+|+|++|+||+ .+||||++++++++++|+++++|+||.|||+|.|.+.......|.|+|||++ . .++
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~---~--~~~ 75 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKD---T--GKK 75 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECC---C--CCC
Confidence 3789999999998 6899999999999999999999999999999999986666789999999999 4 578
Q ss_pred CCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEE
Q 001987 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
+++||++.++|.++..+ .....|++|. + ..|+|++.+.|.
T Consensus 76 ~~~iG~~~~~l~~l~~~---~~~~~w~~L~-~--------~~G~~~~~~~~~ 115 (116)
T cd08376 76 DEFIGRCEIDLSALPRE---QTHSLELELE-D--------GEGSLLLLLTLT 115 (116)
T ss_pred CCeEEEEEEeHHHCCCC---CceEEEEEcc-C--------CCcEEEEEEEec
Confidence 99999999999998865 3467899998 2 259999998874
No 63
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=1.3e-16 Score=150.85 Aligned_cols=97 Identities=25% Similarity=0.362 Sum_probs=83.4
Q ss_pred EEEEEEEEeecCC-----CCCcEEEEEECC-------eEEeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEecC
Q 001987 5 RLYVYVLQGQDLL-----AKDSYVKVQIGK-------HKSKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHN 69 (985)
Q Consensus 5 ~L~V~V~~Ar~L~-----~~DPyv~v~l~~-------~~~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~d 69 (985)
+|+|+|++|+||+ .+||||+|++.+ ++++|+++++|+||+|||+|.|.++ .+....|.|.|||+|
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 5899999999998 689999999831 3578999999999999999999986 244577999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeec
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (985)
..+++++||++.+||.++..++ ....|++|.+
T Consensus 81 -----~~~~dd~IG~~~l~l~~~~~~~---~~~~w~~L~~ 112 (120)
T cd08395 81 -----FARDDRLVGVTVLQLRDIAQAG---SCACWLPLGR 112 (120)
T ss_pred -----ccCCCCEEEEEEEEHHHCcCCC---cEEEEEECcC
Confidence 3578999999999999999764 3678999983
No 64
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.69 E-value=1.1e-16 Score=154.01 Aligned_cols=104 Identities=21% Similarity=0.391 Sum_probs=89.7
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecC---CCCEEEEEEEe
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFD 605 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~---~~~~L~v~V~D 605 (985)
..+.|+|+|++|+||+..+.++.+||||++++.+ .+++|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 3568999999999999999999999999999964 578999999999999999999985332 35689999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCcccceEEEcc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
+|. ++++++||++.++|.+.. ......||+|+
T Consensus 94 ~~~-~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 94 YDR-DGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCC-CCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 998 789999999999999833 33457899985
No 65
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.69 E-value=3.7e-16 Score=152.42 Aligned_cols=117 Identities=21% Similarity=0.509 Sum_probs=96.9
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecC---------CCceEEEEEEecC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI---------DDEELVVSVFQHN 69 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~---------~~~~L~~~V~D~d 69 (985)
+|+|+|++|++|+ .+||||+|++++++++|+++++|+||.|||+|.|.+... ....|.|+|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 6899999999998 789999999999999999999999999999999984211 2367999999999
Q ss_pred CCCCCCCCCCCeeEEEEE-eCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 70 DDSGLFGSSGELMGRVRV-PVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i-~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
+ .++|++||++.+ |+..+...........|++|.+. ....|+|+|++++.+.
T Consensus 82 ---~--~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~------~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 ---S--VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG------GQSAGELLAAFELIEV 134 (135)
T ss_pred ---C--CCCCccceEEEeeeeeecccCCCCCCCceEEEeecC------CCchhheeEEeEEEEe
Confidence 4 578999999987 66666544344567899999822 3468999999999764
No 66
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.69 E-value=1.7e-16 Score=153.03 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=89.9
Q ss_pred CeEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEeec---CCCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMT-GLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~-g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~~---~~~~~L~v~V~D~d 607 (985)
.+.|+|+|++|+||+..+.. |.+||||++.+. +++.||+++++++||+|||+|.|.... .....|.++|||+|
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 46899999999999999876 999999999985 457799999999999999999994222 23457999999999
Q ss_pred CCCCCCCccceEEEEeeccccC--cccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTST--ELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~--~~~~~w~~L~~ 640 (985)
. +++|++||++.|+|.++... +....|++|++
T Consensus 95 ~-~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 95 R-YSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred C-CCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 8 79999999999999998554 56788999863
No 67
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=2.8e-16 Score=153.00 Aligned_cols=116 Identities=32% Similarity=0.558 Sum_probs=97.1
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCe-------EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKH-------KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDD 71 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~-------~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~ 71 (985)
.|+|+|++|+||+ .+||||+|++.+. +.+|+++++|+||.|||+|.|.+. .....|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~~~v~d~~-- 77 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN-PREHRLLFEVFDEN-- 77 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEc-CCCCEEEEEEEECC--
Confidence 3899999999998 6899999999764 479999999999999999999984 44678999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCC---CCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDN---HMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~---~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
. .+++++||++.+++.++..... ......||+|+ ++..+ .+..|+|+|++.|
T Consensus 78 -~--~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~-~~~~~--~~~~G~l~~~~~~ 132 (133)
T cd04033 78 -R--LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLR-PRSSK--SRVKGHLRLYMAY 132 (133)
T ss_pred -C--CCCCCeeEEEEEEHHHCCCcCccccccccchheeee-ecCCC--CcceeEEEEEEee
Confidence 4 5789999999999999986532 12467999999 43322 4679999999987
No 68
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.69 E-value=2.2e-16 Score=151.44 Aligned_cols=114 Identities=22% Similarity=0.395 Sum_probs=95.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC-CEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCC--CC
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCN-GKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ--AT 614 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~--dd 614 (985)
|+|+|++|++|+..+..|.+||||+++++ .+.++|+++++++||.|||+|.|.+.. ...|.|+|||++. +++ |+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~-~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKK-FKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCC-CCCCCCc
Confidence 78999999999999999999999999996 678999999999999999999999633 6799999999998 665 57
Q ss_pred ccceEEEEeeccccCc-ccceEEEcccccc---CCcceeEEEEE
Q 001987 615 SLGHAEINFLKHTSTE-LADMWVSLEGKLA---QSAQSKVHLRI 654 (985)
Q Consensus 615 ~lG~~~i~l~~l~~~~-~~~~w~~L~~~~~---~~~~g~l~l~~ 654 (985)
+||++.+++.++.... ....|++|..... ....|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999986544 4478999965332 22356776654
No 69
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=1.6e-16 Score=156.36 Aligned_cols=103 Identities=20% Similarity=0.383 Sum_probs=89.8
Q ss_pred EEEEEEEeecCCCCCCCC--------------CCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEee-cCCCCEEEEE
Q 001987 538 LTVALVEGVNLASSEMTG--------------LSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAM-EEPPSVLDVE 602 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g--------------~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~-~~~~~~L~v~ 602 (985)
|.|+|++|++|+.+|..+ .+||||+|.+++++.+|+++++++||+|||+|.|.+. ......|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999998554 6899999999999999999999999999999999964 3445699999
Q ss_pred EEecCCCCCCCCccceEEEEeeccccCcc-------cceEEEcccc
Q 001987 603 VFDFDGPFDQATSLGHAEINFLKHTSTEL-------ADMWVSLEGK 641 (985)
Q Consensus 603 V~D~d~~~~~dd~lG~~~i~l~~l~~~~~-------~~~w~~L~~~ 641 (985)
|||+|. +++||+||++.|+|.++..... ...|+.|.+.
T Consensus 82 v~D~d~-~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 82 IRDWDR-VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEECCC-CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 999998 6899999999999999766542 4678888763
No 70
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.68 E-value=2.2e-16 Score=152.02 Aligned_cols=105 Identities=24% Similarity=0.496 Sum_probs=93.4
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCEEEEeeeccCCCCCeEeEEEEEEeec---CCCCEEEEEEEecCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTC---NGKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDFDG 608 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~~~~tlnP~Wne~f~f~v~~---~~~~~L~v~V~D~d~ 608 (985)
.+.|+|+|++|+||+..|..|.+||||++++ +++..+|+++++++||+|||+|.|.+.. .....|.++|||+|.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 4589999999999999999999999999999 3567899999999999999999997432 234589999999998
Q ss_pred CCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
++++++||++.+++.++..+.....|++|.+
T Consensus 95 -~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 95 -FSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred -CcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 7999999999999999988888999999863
No 71
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.68 E-value=4.6e-16 Score=149.88 Aligned_cols=117 Identities=22% Similarity=0.441 Sum_probs=98.7
Q ss_pred EEEEEEEeecCC----CCCcEEEEEECC--eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCC
Q 001987 6 LYVYVLQGQDLL----AKDSYVKVQIGK--HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSG 79 (985)
Q Consensus 6 L~V~V~~Ar~L~----~~DPyv~v~l~~--~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d 79 (985)
|.|+|++|+||+ .+||||+++++. .+++|+++++|+||.|||+|.|.+ ......|.|+|||++ . .+++
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~-~~~~~~l~~~v~d~~---~--~~~~ 74 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFEL-SPNSKELLFEVYDNG---K--KSDS 74 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEe-CCCCCEEEEEEEECC---C--CCCC
Confidence 689999999997 899999999973 568999999999999999999998 455778999999999 4 4689
Q ss_pred CeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001987 80 ELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (985)
Q Consensus 80 ~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (985)
++||++.++|.++..... ...|++|. ++... .....|+|.+.+.|.+.+
T Consensus 75 ~~lG~~~i~l~~l~~~~~---~~~~~~L~-~~~~~-~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 75 KFLGLAIVPFDELRKNPS---GRQIFPLQ-GRPYE-GDSVSGSITVEFLFMEPA 123 (126)
T ss_pred ceEEEEEEeHHHhccCCc---eeEEEEec-CCCCC-CCCcceEEEEEEEEeccc
Confidence 999999999999986632 46899998 43221 245799999999997654
No 72
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.68 E-value=1.4e-16 Score=151.36 Aligned_cols=102 Identities=21% Similarity=0.297 Sum_probs=88.6
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeec-CCCCEEEEEEEecCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAME-EPPSVLDVEVFDFDG 608 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~-~~~~~L~v~V~D~d~ 608 (985)
.+.|.|+|++|+||++.+ .|.+||||++++.. .+.+|+++++++||+|||+|.|.+.. .....|.|+|||+|.
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 468999999999999999 89999999999952 46799999999999999999999643 234579999999997
Q ss_pred CCC-CCCccceEEEEeeccccCcccceEEEc
Q 001987 609 PFD-QATSLGHAEINFLKHTSTELADMWVSL 638 (985)
Q Consensus 609 ~~~-~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (985)
.+ ++++||++.|+|.++..+...+.||.|
T Consensus 90 -~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 90 -KSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred -CcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 55 478999999999999877778899986
No 73
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.68 E-value=6.8e-16 Score=147.21 Aligned_cols=112 Identities=23% Similarity=0.482 Sum_probs=96.1
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
+.|.|+|++|+||+ .+||||+|++++..++|+++++++||.|||+|.|.+. .....|.|+|||++ . .+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~-~~~~~l~~~v~d~~---~--~~ 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIK-DIHDVLEVTVYDED---K--DK 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEec-CcCCEEEEEEEECC---C--CC
Confidence 57999999999998 6899999999998899999999999999999999984 34688999999999 3 57
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
++++||++.+++.++..+ ...||+|.++ ..+ ....|+|+|++.+
T Consensus 75 ~~~~iG~~~~~l~~~~~~-----~~~~~~l~~~-~~~--~~~~G~i~l~~~~ 118 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNG-----ERKWYALKDK-KLR--TRAKGSILLEMDV 118 (119)
T ss_pred CCceeeEEEEEHHHCCCC-----CceEEECccc-CCC--CceeeEEEEEEEe
Confidence 899999999999998644 4579999833 222 4579999999876
No 74
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.67 E-value=4.1e-16 Score=148.74 Aligned_cols=108 Identities=27% Similarity=0.421 Sum_probs=93.1
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 6 LYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
|.|+|++|+||+ .+||||++++.+ .++||+++++++||.|||+|.|.+.......|.|+|||+| + .
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d---~--~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDED---Y--V 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECC---C--C
Confidence 789999999998 689999999963 5689999999999999999999986555678999999999 4 4
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEE
Q 001987 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
++++||++.++|.++..+ .....|++|. .+..|+|.+.+.++
T Consensus 77 -~~~~iG~~~~~l~~l~~g---~~~~~~~~L~--------~~~~g~l~~~~~~~ 118 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLG---EKVRVTFSLN--------PQGKEELEVEFLLE 118 (119)
T ss_pred -CCcccEEEEEEHHHCCCC---CcEEEEEECC--------CCCCceEEEEEEee
Confidence 899999999999998865 3478899998 33579999888764
No 75
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.67 E-value=5.9e-16 Score=148.58 Aligned_cols=115 Identities=24% Similarity=0.453 Sum_probs=96.3
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
+|+|+|++|++|+ .+||||+|++++.+.+|+++++++||.|||+|.|.+.......|.|+|||++ . .++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~---~--~~~ 75 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWD---L--VSK 75 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECC---C--CCC
Confidence 5899999999997 6899999999998999999999999999999999986555788999999999 4 578
Q ss_pred CCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCC-CCCccccEEEEEE
Q 001987 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRK-FTNKDCGKILLTI 127 (985)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~-~~~~~~G~I~lsl 127 (985)
+++||++.++|.++...+ ....||.|.+....+ ...+..|.|.|.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~---~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 76 NDFLGKVVFSIQTLQQAK---QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CcEeEEEEEEHHHcccCC---CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999999987542 357899998332221 2356788888865
No 76
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.67 E-value=3.6e-16 Score=150.96 Aligned_cols=104 Identities=24% Similarity=0.351 Sum_probs=92.6
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d 607 (985)
.+.|+|+|++|+||+..|..+.+||||++++. ..+++|+++++++||+|||+|.|.+... ....|.|.|||++
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~ 94 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK 94 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence 46899999999999999999999999999995 4678999999999999999999996432 3468999999999
Q ss_pred CCC--CCCCccceEEEEeeccccCcccceEEEcc
Q 001987 608 GPF--DQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 608 ~~~--~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
. + +++++||++.|+|.++..+.....|++|.
T Consensus 95 ~-~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 95 S-FLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred c-ccCCCCceEEEEEEecccccccCCccceEECc
Confidence 7 5 68999999999999998888889999984
No 77
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.67 E-value=4.7e-16 Score=146.28 Aligned_cols=96 Identities=25% Similarity=0.484 Sum_probs=84.4
Q ss_pred cEEEEEEEEeecCC---CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL---AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGE 80 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~---~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~ 80 (985)
+.|.|+|++||+|+ ..||||+|++++++.+|++.++ .||.|||+|.|.+.. ....|.|+|||+| . ..||
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~-~~~~L~v~V~dkd---~---~~DD 73 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINR-LDLGLVIELWNKG---L---IWDT 73 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcC-CCCEEEEEEEeCC---C---cCCC
Confidence 58999999999999 6699999999999999999988 599999999999944 4445999999999 3 4999
Q ss_pred eeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 81 LMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 81 ~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
|||++.|||.++..++. ....+||+|.
T Consensus 74 ~lG~v~i~L~~v~~~~~-~~~~~Wy~L~ 100 (127)
T cd08394 74 LVGTVWIPLSTIRQSNE-EGPGEWLTLD 100 (127)
T ss_pred ceEEEEEEhHHcccCCC-CCCCccEecC
Confidence 99999999999987733 4568999998
No 78
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.67 E-value=3.3e-16 Score=147.39 Aligned_cols=101 Identities=21% Similarity=0.384 Sum_probs=89.0
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCC----CCEEEEEEEecCCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEP----PSVLDVEVFDFDGPF 610 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~----~~~L~v~V~D~d~~~ 610 (985)
.+.|+|+|++|++|+ +|.+||||++++++++.+|+++++++||.|||+|.|.+..+. ...|.|+|||+|. +
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~-~ 77 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS-L 77 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc-c
Confidence 468999999999998 578999999999999999999999999999999999964332 4689999999998 7
Q ss_pred CCCCccceEEEEeeccccC---cccceEEEccc
Q 001987 611 DQATSLGHAEINFLKHTST---ELADMWVSLEG 640 (985)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~---~~~~~w~~L~~ 640 (985)
++|++||++.++|+++..+ .....|++|.+
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 8899999999999998655 34678999974
No 79
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.67 E-value=6.9e-16 Score=151.75 Aligned_cols=126 Identities=19% Similarity=0.227 Sum_probs=102.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCCCCCeEeEEEEEEeecC--------CCCEEEEE
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTC-----NGKTRTSSVQLQTCDPQWHDILEFDAMEE--------PPSVLDVE 602 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~-----~~~~~kT~~~~~tlnP~Wne~f~f~v~~~--------~~~~L~v~ 602 (985)
+.|+|....+.+|++.+.++.+||||++++ +.++.||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 345555555555889998999999999997 24789999999999999999999996322 14579999
Q ss_pred EEecCCCC-CCCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeeecCCCcc
Q 001987 603 VFDFDGPF-DQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVE 663 (985)
Q Consensus 603 V~D~d~~~-~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~~~ 663 (985)
|||.|. | .+|++||++.++|..+........|++|.. +..+.+|+|++++-+..+-...
T Consensus 84 V~d~~~-f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k~~Gg~l~v~ir~r~p~~~~ 143 (155)
T cd08690 84 VYHKGG-FLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRKATGGKLEVKVRLREPLTGK 143 (155)
T ss_pred EEeCCC-cccCCCeeEEEEEEcccccccCcceEEEEhhh-CCCCcCCEEEEEEEecCCCccc
Confidence 999997 6 579999999999999987777778999874 3446889999999876665443
No 80
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.67 E-value=2.6e-16 Score=150.03 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=90.5
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEe
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~------~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D 605 (985)
..+.|.|+|++|+||++.+..|.+||||++++- ..+++|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~ 91 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS 91 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence 356899999999999999989999999999983 2478999999999999999999996432 45699999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCc-ccceEEEc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTE-LADMWVSL 638 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~-~~~~w~~L 638 (985)
+|. ++++++||++.|+|.++.... ....||+|
T Consensus 92 ~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 92 VGP-DQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCC-CCceeEEEEEEEEhhhccCCCccccccccC
Confidence 998 799999999999999985553 57789876
No 81
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=5.8e-16 Score=148.79 Aligned_cols=117 Identities=20% Similarity=0.330 Sum_probs=99.2
Q ss_pred eEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCC
Q 001987 536 WVLTVALVEGVNLASSE-MTGLSDPYVVFTCNG--KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQ 612 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d-~~g~~DPyv~v~~~~--~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~ 612 (985)
|.|+|+|++|+||+..+ ..+.+||||++++++ +..+|+++++++||.|||.|.|.+. .....|.|+|||+|. +++
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~-~~~ 79 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFND-KRK 79 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCC-CCC
Confidence 68999999999999766 457799999999987 7899999999999999999999954 567899999999998 689
Q ss_pred CCccceEEEEeeccccCcccc-eEEEccccccCCcceeEEEEEee
Q 001987 613 ATSLGHAEINFLKHTSTELAD-MWVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~-~w~~L~~~~~~~~~g~l~l~~~l 656 (985)
|++||++.++|.++..+.... .|..|.... ...|.|++.+.+
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~--k~~G~i~~~l~~ 122 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLLRNG--KPVGELNYDLRF 122 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhhcCC--ccceEEEEEEEe
Confidence 999999999999988766554 456665322 346999999865
No 82
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.67 E-value=3.6e-16 Score=150.00 Aligned_cols=104 Identities=14% Similarity=0.257 Sum_probs=91.8
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEE-eec--CCCCEEEEEEEecCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFD-AME--EPPSVLDVEVFDFDG 608 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~-v~~--~~~~~L~v~V~D~d~ 608 (985)
.+.|.|+|++|+||++.+..|.+||||++.+. .++++|+++++ +||+|||+|.|. +.. .....|.|+|||+|.
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~ 93 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER 93 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC
Confidence 45899999999999999999999999998773 46789999887 999999999998 422 235689999999998
Q ss_pred CCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 609 PFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
++++++||++.|+|.++..+.....|++|++
T Consensus 94 -~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 94 -MRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred -cccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 8999999999999999988888999999974
No 83
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.67 E-value=4.7e-16 Score=152.86 Aligned_cols=98 Identities=26% Similarity=0.514 Sum_probs=83.8
Q ss_pred EEEEEEEEeecCC----CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe---------------cCCCce
Q 001987 5 RLYVYVLQGQDLL----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH---------------NIDDEE 60 (985)
Q Consensus 5 ~L~V~V~~Ar~L~----~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~---------------~~~~~~ 60 (985)
+|.|+|++|+||+ .+||||+|++.+ .+++|+++++|+||+|||+|.|.+. +.....
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 5899999999998 799999999976 5689999999999999999999984 223468
Q ss_pred EEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeec
Q 001987 61 LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (985)
Q Consensus 61 L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (985)
|.|.|||++ . .++++|||++.|||.++.... .....||+|.+
T Consensus 81 L~i~V~d~~---~--~~~ddfLG~v~i~l~~l~~~~--~~~~~W~~L~~ 122 (148)
T cd04010 81 LRVDLWHAS---M--GGGDVFLGEVRIPLRGLDLQA--GSHQAWYFLQP 122 (148)
T ss_pred EEEEEEcCC---C--CCCCceeEEEEEecccccccC--CcCcceeecCC
Confidence 999999999 4 578999999999999998651 23578999983
No 84
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.66 E-value=4.4e-16 Score=148.82 Aligned_cols=97 Identities=27% Similarity=0.551 Sum_probs=85.1
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEE-e--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL-----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRV-H--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v-~--~~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .++||+++++++||.|||+|.|.+ + +.....|.|+|||+|
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 478999999999998 689999999973 468999999999999999999996 4 567789999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEe
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (985)
+ .+++++||++.++|.++...+ ....||+|
T Consensus 92 ---~--~~~~~~lG~~~i~l~~l~~~~---~~~~W~~L 121 (122)
T cd08381 92 ---S--LVENEFLGGVCIPLKKLDLSQ---ETEKWYPL 121 (122)
T ss_pred ---C--CcCCcEEEEEEEeccccccCC---CccceEEC
Confidence 5 578999999999999998652 36789987
No 85
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.66 E-value=2.8e-16 Score=151.60 Aligned_cols=89 Identities=34% Similarity=0.603 Sum_probs=82.6
Q ss_pred CCCcEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCC
Q 001987 1 MVSTRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL 74 (985)
Q Consensus 1 ~~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~ 74 (985)
|.-+.|+|+|++|.||. ++||||++.+++++.||+++.+++||+|||+|.|.+ ......|.++|||+| .
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v-~d~~~~lkv~VyD~D---~- 77 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTV-KDPNTPLKVTVYDKD---T- 77 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEe-cCCCceEEEEEEeCC---C-
Confidence 45689999999999998 799999999999999999999999999999999999 577788999999999 5
Q ss_pred CCCCCCeeEEEEEeCcccccc
Q 001987 75 FGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~ 95 (985)
.+.|||||++.|||..+...
T Consensus 78 -fs~dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 78 -FSSDDFMGEATIPLKPLLEA 97 (168)
T ss_pred -CCcccccceeeeccHHHHHH
Confidence 57999999999999999865
No 86
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=5.7e-16 Score=146.82 Aligned_cols=112 Identities=30% Similarity=0.463 Sum_probs=98.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCcc
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~l 616 (985)
|+|+|++|++|+..+..|.+||||++.+++ +.++|+++.+++||+|||+|.|.+.......|.|+|||+|. ++++++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~-~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDR-GGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCC-CCCCCce
Confidence 579999999999999889999999999975 45799999999999999999999655567799999999998 6899999
Q ss_pred ceEEEEeeccccCcccceEEEccccccCCcceeEE
Q 001987 617 GHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVH 651 (985)
Q Consensus 617 G~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~ 651 (985)
|++.+++.++..+...+.|++|.++++. ..|.+.
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~~g~~-~~~~~~ 113 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDGQGGG-KLGAVF 113 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcCCCCc-cCceEE
Confidence 9999999999888888999999875443 445554
No 87
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.66 E-value=5.3e-16 Score=149.24 Aligned_cols=101 Identities=26% Similarity=0.403 Sum_probs=87.4
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~ 68 (985)
.+.|.|+|++|+||+ .+||||++++.+ .++||+++++++||+|||+|.|.++ ......|.|.|||.
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 478999999999997 479999999973 3679999999999999999999986 34568999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ + .+++++||++.|+|.++...+.......||+|.
T Consensus 94 ~---~--~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 94 R---T--LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred C---C--CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 9 4 578999999999999998765445678999983
No 88
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.66 E-value=1e-15 Score=146.42 Aligned_cols=109 Identities=28% Similarity=0.603 Sum_probs=95.4
Q ss_pred cEEEEEEEEeecCC------------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCC
Q 001987 4 TRLYVYVLQGQDLL------------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDD 71 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~ 71 (985)
+.|+|+|++|+||+ .+||||+|++++..++|+++++++||.|||+|.|.+.....+.|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~-- 78 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDED-- 78 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecC--
Confidence 57999999999998 2699999999999999999999999999999999986667789999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
. . ++++||++.++|.++..++ ....||+|. ....|+|++.++|
T Consensus 79 -~--~-~~~~iG~~~i~l~~l~~~~---~~~~w~~L~--------~~~~G~~~~~~~~ 121 (121)
T cd08391 79 -P--D-KDDFLGRLSIDLGSVEKKG---FIDEWLPLE--------DVKSGRLHLKLEW 121 (121)
T ss_pred -C--C-CCCcEEEEEEEHHHhcccC---ccceEEECc--------CCCCceEEEEEeC
Confidence 3 3 8899999999999987542 367999998 2357999998865
No 89
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.66 E-value=5.6e-16 Score=148.94 Aligned_cols=105 Identities=23% Similarity=0.377 Sum_probs=95.0
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccC-CCCCeEeEEEEEEeecC---CCCEEEEEEEecCCCCC
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQ-TCDPQWHDILEFDAMEE---PPSVLDVEVFDFDGPFD 611 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~-tlnP~Wne~f~f~v~~~---~~~~L~v~V~D~d~~~~ 611 (985)
|.|.|+|++|++|+..+..+.+||||+++++++.++|+++++ ++||.|||.|.|.+... ....|.|+|||++. ++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~-~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN-FS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-CC
Confidence 589999999999999998999999999999999999999875 99999999999996444 25689999999998 78
Q ss_pred CCCccceEEEEeeccccCcccceEEEcccc
Q 001987 612 QATSLGHAEINFLKHTSTELADMWVSLEGK 641 (985)
Q Consensus 612 ~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (985)
+|++||++.++|.++..+...+.|++|.+.
T Consensus 80 ~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 999999999999999888888999999863
No 90
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=7.2e-16 Score=146.90 Aligned_cols=102 Identities=25% Similarity=0.348 Sum_probs=91.3
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
|.|+|+|++|++|+..+..|.+||||++++++ ...+|+++++++||.|||.|.|.+ ..+...|.|+|||+|. +++|+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v-~~~~~~L~v~v~d~~~-~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPV-TSPNQKITLEVMDYEK-VGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEe-cCCCCEEEEEEEECCC-CCCCC
Confidence 68999999999999999999999999999987 568999999999999999999984 4456799999999998 79999
Q ss_pred ccceEEEEeeccccCcccceEEEccc
Q 001987 615 SLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
+||++.+++.++..+ ..+.||.|.+
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecC
Confidence 999999999998776 5677888775
No 91
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.66 E-value=4e-16 Score=156.39 Aligned_cols=106 Identities=22% Similarity=0.331 Sum_probs=93.9
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeec---CCCCEEEEEEEe
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFD 605 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~---~~~~~L~v~V~D 605 (985)
..|.|.|+|++|+||++.|..|.+||||++++. ..+++|+++++++||+|||.|.|.+.. .....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 467999999999999999999999999999883 467899999999999999999998432 234589999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
+|. +++|++||++.+++..+......+.|+.|.+
T Consensus 105 ~d~-~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 105 HDK-LSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCC-CCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 998 7899999999999999887777899999875
No 92
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.65 E-value=4.9e-16 Score=149.14 Aligned_cols=104 Identities=26% Similarity=0.371 Sum_probs=91.4
Q ss_pred CCeEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEe
Q 001987 534 DGWVLTVALVEGVNLASSE-MTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d-~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D 605 (985)
..+.|+|+|++|+||+..+ ..|.+||||++++. ..+.+|+++++++||+|||+|.|.+... ....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d 91 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWH 91 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence 3568999999999999998 78899999999983 1468999999999999999999996432 25689999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCcccceEEEc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (985)
+|. ++++++||++.++|.++..+...+.||+|
T Consensus 92 ~~~-~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 92 HDR-FGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCC-CcCCceeeEEEEecccccccCCCccEEEC
Confidence 998 78999999999999999877778999987
No 93
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.65 E-value=8.6e-16 Score=150.02 Aligned_cols=98 Identities=23% Similarity=0.415 Sum_probs=85.4
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEE-ecC
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVF-QHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~-D~d 69 (985)
.+.|.|+|++|+||+ .+||||++++.+ .++||+++++|+||+|||+|.|.+. .....|.|+|| |++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 478999999999997 479999999964 3689999999999999999999995 78899999999 567
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeec
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (985)
+ .++++|||++.|+|.++.... ....||+|.+
T Consensus 107 ---~--~~~~~~iG~~~i~L~~l~~~~---~~~~Wy~L~~ 138 (146)
T cd04028 107 ---R--MDKKVFMGVAQILLDDLDLSN---LVIGWYKLFP 138 (146)
T ss_pred ---C--CCCCceEEEEEEEcccccCCC---CceeEEecCC
Confidence 4 568999999999999997653 3578999983
No 94
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.65 E-value=9.2e-16 Score=147.22 Aligned_cols=106 Identities=23% Similarity=0.352 Sum_probs=93.3
Q ss_pred CCeEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecC
Q 001987 534 DGWVLTVALVEGVNLASSE-MTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d-~~g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d 607 (985)
..+.|.|+|++|+||+..+ ..+.+||||++++. .+..+|+++++++||+|||.|.|.+... ....|.|+|||+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~ 91 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD 91 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECC
Confidence 3568999999999999998 68899999999983 4567899999999999999999996432 2458999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. ++++++||++.++|.++......+.|++|++
T Consensus 92 ~-~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 92 R-FSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred c-CCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 8 6889999999999999998888899999973
No 95
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.65 E-value=7.9e-16 Score=150.86 Aligned_cols=92 Identities=34% Similarity=0.550 Sum_probs=85.1
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
|.|+|+|++|+||+..|. +.+||||+++++++..+|+++++++||+|||+|.|.+ .++...|.|+|||+|. +++|++
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i-~~~~~~l~~~V~D~d~-~~~dd~ 78 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSV-PNPMAPLKLEVFDKDT-FSKDDS 78 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEe-cCCCCEEEEEEEECCC-CCCCCE
Confidence 789999999999999997 8999999999999999999999999999999999995 4557899999999998 899999
Q ss_pred cceEEEEeeccccCc
Q 001987 616 LGHAEINFLKHTSTE 630 (985)
Q Consensus 616 lG~~~i~l~~l~~~~ 630 (985)
||++.+++.++....
T Consensus 79 iG~a~i~l~~l~~~~ 93 (145)
T cd04038 79 MGEAEIDLEPLVEAA 93 (145)
T ss_pred EEEEEEEHHHhhhhh
Confidence 999999999976543
No 96
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.65 E-value=5.4e-16 Score=149.28 Aligned_cols=114 Identities=15% Similarity=0.225 Sum_probs=97.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEEeeecc-CCCCCeEeEEEEEEeecCC----CCEEEEEEEecCCCC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQL-QTCDPQWHDILEFDAMEEP----PSVLDVEVFDFDGPF 610 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~-~tlnP~Wne~f~f~v~~~~----~~~L~v~V~D~d~~~ 610 (985)
.|+|+|++|++|+..+..+.+||||++++++ ++.+|+++. ++.||.|||.|.|.+.... ...|.|+|||++. +
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-~ 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-S 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-C
Confidence 3799999999999999899999999999988 889999975 5899999999999964442 6799999999998 7
Q ss_pred CCCCccceEEEEeeccccCcc-----cceEEEccccccCCcceeEEE
Q 001987 611 DQATSLGHAEINFLKHTSTEL-----ADMWVSLEGKLAQSAQSKVHL 652 (985)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~~~~g~l~l 652 (985)
++|++||++.|+|.++..+.. ...|++|..+.+. ..|.|++
T Consensus 80 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~-~~G~~~~ 125 (125)
T cd04051 80 LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK-PQGVLNF 125 (125)
T ss_pred CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC-cCeEEeC
Confidence 899999999999999876654 3789999975543 5677764
No 97
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.64 E-value=7.2e-16 Score=150.38 Aligned_cols=103 Identities=23% Similarity=0.342 Sum_probs=92.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CEEEEeeeccCCCCCeEeEEEEEEeecC---------------CCCE
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCN----GKTRTSSVQLQTCDPQWHDILEFDAMEE---------------PPSV 598 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~----~~~~kT~~~~~tlnP~Wne~f~f~v~~~---------------~~~~ 598 (985)
|+|+|++|+||+.+ .+|.+||||+++++ ++..+|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999998 78999999999998 7889999999999999999999996544 4568
Q ss_pred EEEEEEecCCCCCCCCccceEEEEeeccccCcccceEEEccccc
Q 001987 599 LDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKL 642 (985)
Q Consensus 599 L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (985)
|.|+|||+|. ++++++||++.++|.++........|++|.++.
T Consensus 80 l~i~V~d~~~-~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASM-VSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCc-CcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998 689999999999999988777789999999754
No 98
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.64 E-value=1.9e-15 Score=145.84 Aligned_cols=115 Identities=33% Similarity=0.645 Sum_probs=93.7
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCC-----
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDS----- 72 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~----- 72 (985)
.+|+|+|++|++|+ .+||||+|++++..++|+++++++||.|||+|.|.+. .....|.|+|||+|...
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~-~~~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECH-NSSDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEec-CCCCEEEEEEEECCCCcccccc
Confidence 47999999999998 6899999999988899999999999999999999884 34578999999998210
Q ss_pred -CCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEE
Q 001987 73 -GLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTI 127 (985)
Q Consensus 73 -~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl 127 (985)
++..+.+++||++.+++.++... ...||.|. ++..+ ...+|+|+|++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~~~-----~~~w~~L~-~~~~~--~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLSGE-----MDVWYNLE-KRTDK--SAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHccCC-----CCeEEECc-cCCCC--CcEeEEEEEEC
Confidence 01124789999999999987532 56899999 55433 56799999874
No 99
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.64 E-value=1.1e-15 Score=146.72 Aligned_cols=98 Identities=24% Similarity=0.426 Sum_probs=85.4
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~ 68 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .++||+++++++||.|||+|.|.++ ......|.|.|||+
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~ 93 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY 93 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 578999999999997 589999999963 3589999999999999999999986 34567899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ . .+++++||++.++|.++.... ....||+|.
T Consensus 94 ~---~--~~~~~~lG~~~i~l~~~~~~~---~~~~w~~l~ 125 (125)
T cd04029 94 D---R--FGRNTFLGEVEIPLDSWNFDS---QHEECLPLH 125 (125)
T ss_pred C---C--CCCCcEEEEEEEeCCcccccC---CcccEEECc
Confidence 9 4 579999999999999998763 478999984
No 100
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.64 E-value=4.4e-15 Score=142.98 Aligned_cols=116 Identities=16% Similarity=0.232 Sum_probs=97.6
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
...|+|+|++|++|. .+||||++.++++..+|+++++++||.|||+|.|.+. .....|.|+|||++ + .
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~-~~~~~l~i~V~d~~---~--~ 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRK-KPRSPIKIQVWNSN---L--L 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEec-CCCCEEEEEEEECC---C--C
Confidence 467999999999998 6999999999999999999999999999999999884 45789999999998 4 2
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
+|++||++.+++.++.. ....|++|. .+..+..++..|+|.|.+.+.+
T Consensus 76 -~d~~lG~~~~~l~~~~~-----~~~~~~~l~-~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 -CDEFLGQATLSADPNDS-----QTLRTLPLR-KRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred -CCCceEEEEEecccCCC-----cCceEEEcc-cCCCCCCCCCCCEEEEEEEEcc
Confidence 58999999999987542 356889997 3333345788999999987754
No 101
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.64 E-value=1.1e-15 Score=146.95 Aligned_cols=98 Identities=32% Similarity=0.491 Sum_probs=85.0
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~ 68 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .++||+++++++||.|||+|.|.++ +.....|.|+|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 368999999999998 489999999963 3489999999999999999999986 45668999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
| + .+++++||++.+||.++... .....||+|+
T Consensus 94 ~---~--~~~~~~iG~~~i~L~~~~~~---~~~~~W~~L~ 125 (125)
T cd08393 94 D---S--LGRNSFLGEVEVDLGSWDWS---NTQPTWYPLQ 125 (125)
T ss_pred C---C--CCCCcEeEEEEEecCccccC---CCCcceEECc
Confidence 9 4 57899999999999999765 2467899984
No 102
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.64 E-value=1e-16 Score=171.78 Aligned_cols=123 Identities=25% Similarity=0.382 Sum_probs=102.4
Q ss_pred hhhcccccCCCCCc-------cccCCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeE
Q 001987 516 FVRARLRKGSDHGV-------KAQGDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQW 583 (985)
Q Consensus 516 ~~~~~~~~~~d~~~-------~~~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~W 583 (985)
..+.+.+++.|+.- .++.....|+|.|.+|+||.++|.||.|||||++.+- ..+.+|++++.+|||+|
T Consensus 153 v~nVPslCG~DhtE~RGrl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~w 232 (683)
T KOG0696|consen 153 VENVPSLCGTDHTERRGRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVW 232 (683)
T ss_pred hhcCCcccCCcchhhcceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccc
Confidence 34556677777632 2233456899999999999999999999999999993 45789999999999999
Q ss_pred eEEEEEEee-cCCCCEEEEEEEecCCCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 584 HDILEFDAM-EEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 584 ne~f~f~v~-~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
||+|+|.+. .+....|.|+|||||+. +++||+|.....++++... ..+.||.|..
T Consensus 233 NEtftf~Lkp~DkdrRlsiEvWDWDrT-sRNDFMGslSFgisEl~K~-p~~GWyKlLs 288 (683)
T KOG0696|consen 233 NETFTFKLKPSDKDRRLSIEVWDWDRT-SRNDFMGSLSFGISELQKA-PVDGWYKLLS 288 (683)
T ss_pred cceeEEecccccccceeEEEEeccccc-ccccccceecccHHHHhhc-chhhHHHHhh
Confidence 999999964 34567999999999995 9999999999999998765 4788999875
No 103
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.64 E-value=1.3e-15 Score=145.45 Aligned_cols=93 Identities=22% Similarity=0.300 Sum_probs=83.1
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEee-cCCCCEEEEEEEecCCCCC
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAM-EEPPSVLDVEVFDFDGPFD 611 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~-~~~~~~L~v~V~D~d~~~~ 611 (985)
...|.|+|+|++|++|+. +..|.+||||+|++++++++|+++++++||+|||+|.|... ......|.|+|||+|. ++
T Consensus 25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~-~s 102 (127)
T cd04032 25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN-GW 102 (127)
T ss_pred CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC-CC
Confidence 446899999999999984 67889999999999999999999999999999999999743 3457799999999998 79
Q ss_pred CCCccceEEEEeeccc
Q 001987 612 QATSLGHAEINFLKHT 627 (985)
Q Consensus 612 ~dd~lG~~~i~l~~l~ 627 (985)
+|++||++.++|....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 9999999999999654
No 104
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.63 E-value=4.7e-15 Score=144.17 Aligned_cols=113 Identities=25% Similarity=0.467 Sum_probs=97.5
Q ss_pred CCCcEEEEEEEEeecCC---C-------------CCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecCCCceEEE
Q 001987 1 MVSTRLYVYVLQGQDLL---A-------------KDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVV 63 (985)
Q Consensus 1 ~~~~~L~V~V~~Ar~L~---~-------------~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~ 63 (985)
|..+.|+|+|++|+||. . +||||++++++++ .+|+++++|+||.|||+|.|.+. ....|.|
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 78899999999999997 2 6999999998765 79999999999999999999994 5688999
Q ss_pred EEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 64 SVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 64 ~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
.|||.+ . .+++++||++.++|.++... .......|++|. +.|+|+|.++|..
T Consensus 79 ~v~d~~---~--~~~~~~iG~~~i~l~~l~~~-~~~~~~~w~~L~----------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDA---A--IGPDDFVANCTISFEDLIQR-GSGSFDLWVDLE----------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCC---C--CCCCceEEEEEEEhHHhccc-CCCcccEEEEcc----------CCcEEEEEEEEec
Confidence 999988 3 57899999999999998864 123468999997 3599999999865
No 105
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.63 E-value=1.1e-15 Score=150.65 Aligned_cols=100 Identities=26% Similarity=0.494 Sum_probs=87.7
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------EEEEeeeccCCCCCeE
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----------------------------KTRTSSVQLQTCDPQW 583 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----------------------------~~~kT~~~~~tlnP~W 583 (985)
...+.|+|+|++|+||++.|.+|.+||||++.++. +..+|+++++++||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 34689999999999999999999999999999853 2378999999999999
Q ss_pred eEEEEEEeecCCCCEEEEEEEecCCCCCCCCccceEEEEeeccccCcccceEEEc
Q 001987 584 HDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (985)
Q Consensus 584 ne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (985)
||+|.|.+.......|.|+|||+| +++||++.+++.++.. ...+.||+|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999975555679999999976 7899999999999884 457999987
No 106
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.63 E-value=1.7e-15 Score=142.17 Aligned_cols=98 Identities=31% Similarity=0.586 Sum_probs=86.3
Q ss_pred EEEEEEEeecCC-------CCCcEEEEEECCeEEeecCccCCCCCeE-eeEEEEEEec--CCCceEEEEEEecCCCCCCC
Q 001987 6 LYVYVLQGQDLL-------AKDSYVKVQIGKHKSKSRILKNNSNPVW-NEEFVFRVHN--IDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 6 L~V~V~~Ar~L~-------~~DPyv~v~l~~~~~kT~v~~~t~nP~w-nE~f~f~v~~--~~~~~L~~~V~D~d~~~~~~ 75 (985)
|.|+|++|+||+ .+||||++++++.++||+++++++||.| ||+|.|.++. .....|.|+|||++ .
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d---~-- 75 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHD---T-- 75 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCC---C--
Confidence 689999999997 5799999999999999999999999999 9999999863 24579999999999 4
Q ss_pred CCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
.+++++||++.++|.++...++......||+|.
T Consensus 76 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 76 YSANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 578999999999999998754445578999986
No 107
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.62 E-value=2.1e-15 Score=140.43 Aligned_cols=95 Identities=31% Similarity=0.606 Sum_probs=85.4
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
.|.|+|++|+||+ .+||||+|+++++.++|+++++|+||.|||+|.|.+..+....|.|+|||++ .
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~--------~ 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDK--------T 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECC--------C
Confidence 3899999999998 7999999999999999999999999999999999997667789999999998 2
Q ss_pred CCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+++||++.++|.++...+ ......||+|.
T Consensus 73 ~~~iG~~~i~l~~l~~~~-~~~~~~w~~L~ 101 (105)
T cd04050 73 GKSLGSLTLPLSELLKEP-DLTLDQPFPLD 101 (105)
T ss_pred CCccEEEEEEHHHhhccc-cceeeeeEecC
Confidence 789999999999998653 23468999998
No 108
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.62 E-value=1.6e-15 Score=144.65 Aligned_cols=98 Identities=20% Similarity=0.416 Sum_probs=85.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC------eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK------HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~------~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~ 68 (985)
.+.|.|+|++||||+ .+||||++++.+ .++||+++++++||+|||+|.|+++ +.....|.|.|||+
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~ 92 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSV 92 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeC
Confidence 578999999999998 589999999962 3689999999999999999999986 56789999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEe
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (985)
+ + .+++++||++.++|+++..... ....||+|
T Consensus 93 ~---~--~~~~~~lG~~~i~L~~~~~~~~--~~~~Wy~l 124 (124)
T cd08680 93 G---P--DQQEECLGGAQISLADFESSEE--MSTKWYNL 124 (124)
T ss_pred C---C--CCceeEEEEEEEEhhhccCCCc--cccccccC
Confidence 9 4 5789999999999999976532 35779976
No 109
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.62 E-value=5.3e-15 Score=147.78 Aligned_cols=116 Identities=22% Similarity=0.426 Sum_probs=96.5
Q ss_pred CCcEEEEEEEEeecCCC------------------------------------CCcEEEEEECCeE-EeecCccCCCCCe
Q 001987 2 VSTRLYVYVLQGQDLLA------------------------------------KDSYVKVQIGKHK-SKSRILKNNSNPV 44 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~~------------------------------------~DPyv~v~l~~~~-~kT~v~~~t~nP~ 44 (985)
.+|.|.|+|++|++|+. +||||+|++++.+ .||++++++.||.
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~ 84 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPV 84 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence 57899999999999971 5999999999755 7999999999999
Q ss_pred EeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEE
Q 001987 45 WNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKIL 124 (985)
Q Consensus 45 wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~ 124 (985)
|||+|.|.+. ...+.|.|.|||+| . . ++++||++.+||.++..+ .....|++|.+. .+++ .+..|+|+
T Consensus 85 WnE~F~~~~~-~~~~~l~~~V~d~d---~--~-~~~~IG~~~i~l~~l~~g---~~~~~w~~L~~~-~~~~-~~~~~~l~ 152 (158)
T cd04015 85 WNESFHIYCA-HYASHVEFTVKDND---V--V-GAQLIGRAYIPVEDLLSG---EPVEGWLPILDS-NGKP-PKPGAKIR 152 (158)
T ss_pred cceEEEEEcc-CCCCEEEEEEEeCC---C--c-CCcEEEEEEEEhHHccCC---CCcceEEECcCC-CCCC-CCCCCEEE
Confidence 9999999984 45578999999999 3 3 568999999999999864 346799999843 3332 45678999
Q ss_pred EEEEE
Q 001987 125 LTISL 129 (985)
Q Consensus 125 lsl~~ 129 (985)
|++.|
T Consensus 153 v~~~f 157 (158)
T cd04015 153 VSLQF 157 (158)
T ss_pred EEEEE
Confidence 99988
No 110
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.62 E-value=5.4e-15 Score=141.31 Aligned_cols=112 Identities=21% Similarity=0.408 Sum_probs=92.8
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 6 LYVYVLQGQDLL------AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
|.|+|++|++|+ .+||||+|.+++.. +||+++++++||.|||.|.|.+ ......|.|.|||++ . .++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~-~~~~~~l~v~v~d~~---~--~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHL-PPGFHTVSFYVLDED---T--LSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEee-CCCCCEEEEEEEECC---C--CCC
Confidence 899999999998 78999999998754 7999999999999999999998 344579999999999 4 578
Q ss_pred CCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEE
Q 001987 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTIS 128 (985)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~ 128 (985)
+++||++.+++..+.... .....|++|. +.... ....|+|++.++
T Consensus 76 d~~iG~~~~~~~~~~~~~--~~~~~W~~L~-~~~~~--~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAHP--RGIDGWMNLT-EVDPD--EEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccCC--CCCCcEEECe-eeCCC--CccccEEEEEEE
Confidence 999999999988876432 2357899998 33221 456899998875
No 111
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.62 E-value=2.5e-15 Score=141.35 Aligned_cols=101 Identities=26% Similarity=0.492 Sum_probs=89.3
Q ss_pred cEEEEEEEEeecCC--CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEec----CCCceEEEEEEecCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL--AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHN----IDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~--~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~----~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
-.|+|+|++|+||+ .+||||++++++++++|+++++++||.|||+|.|.+.. .....|.|+|||++ + .+
T Consensus 4 ~~l~V~v~~a~~L~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~---~--~~ 78 (111)
T cd04011 4 FQVRVRVIEARQLVGGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR---S--LR 78 (111)
T ss_pred EEEEEEEEEcccCCCCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc---c--cc
Confidence 36899999999998 89999999999999999999999999999999999742 23578999999999 4 56
Q ss_pred CCCeeEEEEEeCccccccCCCCCCCeEEEeec
Q 001987 78 SGELMGRVRVPVSSIAAEDNHMLPPTWFSLET 109 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~ 109 (985)
++++||++.++|+++....++.....|++|.+
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 89999999999999987766667789999973
No 112
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.61 E-value=5.2e-15 Score=141.85 Aligned_cols=113 Identities=19% Similarity=0.328 Sum_probs=92.6
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEEC-CeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIG-KHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~-~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
.|+|+|++|+||+ .+||||+++++ .+.++|+++++++||.|||+|.|.+.. ...|.|+|||++ . .+
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~---~--~~ 73 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQK---K--FK 73 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECC---C--CC
Confidence 4899999999998 68999999996 567999999999999999999999943 789999999999 4 33
Q ss_pred C--CCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEE
Q 001987 78 S--GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTI 127 (985)
Q Consensus 78 ~--d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl 127 (985)
+ ++|||++.+++.++..... ....|++|.+.+.. ......|+|.+.+
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~--~~~~~~~l~~~~~~-~~~~~~G~v~~~~ 122 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKD--TGYQRLDLRKLKKS-DNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeEEEEEHHHccccCC--CccceeEeecCCCC-CCceEeeEEEEEe
Confidence 3 5899999999999975532 24679999744322 2355689999876
No 113
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=7.9e-15 Score=141.56 Aligned_cols=113 Identities=27% Similarity=0.329 Sum_probs=96.4
Q ss_pred EEEeecCC----CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEec--CCCceEEEEEEecCCCCCCCCCCCCeeE
Q 001987 10 VLQGQDLL----AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHN--IDDEELVVSVFQHNDDSGLFGSSGELMG 83 (985)
Q Consensus 10 V~~Ar~L~----~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~--~~~~~L~~~V~D~d~~~~~~~~~d~~lG 83 (985)
|++|+||+ .+||||+|++++.+++|++++++.||.|||+|.|.+.. .....|.|+|||++ + .+++++||
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~---~--~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYE---K--VGRNRLIG 76 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECC---C--CCCCceEE
Confidence 78999999 79999999999999999999999999999999999853 36789999999999 4 57899999
Q ss_pred EEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecCC
Q 001987 84 RVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGH 134 (985)
Q Consensus 84 ~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~ 134 (985)
++.++|.++..+ .....|++|.++.. ...+|+|+++++|.+..+
T Consensus 77 ~~~~~l~~l~~~---~~~~~~~~L~~~~~----~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 77 SATVSLQDLVSE---GLLEVTEPLLDSNG----RPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEhhHcccC---CceEEEEeCcCCCC----CcccEEEEEEEEEeCCCC
Confidence 999999999865 23678999983332 234799999999988653
No 114
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=3.1e-15 Score=143.52 Aligned_cols=91 Identities=23% Similarity=0.374 Sum_probs=82.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEE--EEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKT--RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~--~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
+|+|.|++|++|++.|..|.+||||+++++++. .+|+++++++||.|||+|.|.+..+....|.|+|||+|. +++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~-~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDL-LGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCC-CCCCc
Confidence 479999999999999999999999999999865 478889999999999999999655667799999999998 78999
Q ss_pred ccceEEEEeecccc
Q 001987 615 SLGHAEINFLKHTS 628 (985)
Q Consensus 615 ~lG~~~i~l~~l~~ 628 (985)
+||++.++|.+...
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999998654
No 115
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.61 E-value=7.8e-15 Score=142.84 Aligned_cols=115 Identities=15% Similarity=0.290 Sum_probs=96.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEE-EeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCC---C
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTR-TSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFD---Q 612 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~-kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~---~ 612 (985)
.|.|.|+||++|++++ ||||.|.++++.+ +|+++.++.||.|+|.|.|. ..++...|.|.||+.|...+ +
T Consensus 12 sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~-~~~~~~~l~v~v~k~~~~~~~~~~ 85 (146)
T cd04013 12 SLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFS-NLPPVSVITVNLYRESDKKKKKDK 85 (146)
T ss_pred EEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEec-CCCcccEEEEEEEEccCccccccC
Confidence 6899999999999876 8999999999875 99999999999999999998 34445789999987653222 5
Q ss_pred CCccceEEEEeeccccCcccceEEEccccccC---------CcceeEEEEEeee
Q 001987 613 ATSLGHAEINFLKHTSTELADMWVSLEGKLAQ---------SAQSKVHLRIFLE 657 (985)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~---------~~~g~l~l~~~ls 657 (985)
+++||++.||+.++..+...+.||+|.+..+. ...++|++++.|.
T Consensus 86 ~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~ 139 (146)
T cd04013 86 SQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQ 139 (146)
T ss_pred CcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEE
Confidence 78999999999999988889999999875433 3457888888664
No 116
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.61 E-value=1e-14 Score=140.58 Aligned_cols=112 Identities=22% Similarity=0.427 Sum_probs=94.3
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCe---EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKH---KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~---~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~ 75 (985)
.|.|+|++|++|+ .+||||++.+.+. .++|+++++++||.|||+|.|.+.......|.|+|||++ .
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d---~-- 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRS---F-- 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECC---C--
Confidence 6899999999998 6899999998743 589999999999999999999986555789999999999 4
Q ss_pred CCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 76 GSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
.+++++||++.++|..+....+......|++|. ..|+|++.+.+..
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~----------~~g~i~l~~~~~~ 122 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD----------TQGRLLLRVSMEG 122 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCCCCCceEEEEcC----------CCCeEEEEEEEee
Confidence 568999999999999876543234567899997 2589999988854
No 117
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.60 E-value=6.1e-15 Score=141.67 Aligned_cols=114 Identities=24% Similarity=0.338 Sum_probs=95.2
Q ss_pred cEEEEEEEEeecCC-------CCCcEEEEEECC--eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCC
Q 001987 4 TRLYVYVLQGQDLL-------AKDSYVKVQIGK--HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL 74 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~-------~~DPyv~v~l~~--~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~ 74 (985)
+.|.|+|++|+||+ .+||||++.+++ ..++|+++++++||.|||.|.|.+. ...+.|.|+|||.+ .
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~---~- 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFN---D- 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecC---C-
Confidence 67999999999998 379999999987 6799999999999999999999984 66889999999999 4
Q ss_pred CCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 75 FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
.+++++||++.++|.++..... ....|+.+. . . .+.+|+|+++++|.|
T Consensus 77 -~~~d~~iG~~~~~l~~l~~~~~--~~~~~~~~~-~-~----~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 -KRKDKLIGTAEFDLSSLLQNPE--QENLTKNLL-R-N----GKPVGELNYDLRFFP 124 (124)
T ss_pred -CCCCceeEEEEEEHHHhccCcc--ccCcchhhh-c-C----CccceEEEEEEEeCC
Confidence 4689999999999999986633 122345554 2 1 456899999999964
No 118
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.60 E-value=1.7e-15 Score=147.52 Aligned_cols=104 Identities=21% Similarity=0.349 Sum_probs=89.5
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEec
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDF 606 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~ 606 (985)
..+.|.|+|++|+||++.|..|.+||||++++. ..+.+|+++++++||+|||+|.|.+... ....|.|+|||+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~ 90 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK 90 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence 457999999999999999999999999999995 2467999999999999999999996432 346899999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
|. ++++++||++.+++.. .+.....|+++..
T Consensus 91 d~-~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 91 DI-GKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred CC-CCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 98 6889999999999986 3445678988764
No 119
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.59 E-value=4e-15 Score=141.43 Aligned_cols=98 Identities=26% Similarity=0.472 Sum_probs=81.7
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe-cCCCceEEEEEEecCCC
Q 001987 3 STRLYVYVLQGQDLL-----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVVSVFQHNDD 71 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~-~~~~~~L~~~V~D~d~~ 71 (985)
++.|.|+|++|+||+ .+||||+|++++ .++||+++++++||.|||+|.|.+. ......|.|+|||.+
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~-- 88 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL-- 88 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC--
Confidence 578999999999998 589999999974 3579999999999999999999985 223457889999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEe
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (985)
++ ..++++||++.+||.++..+ .....||.|
T Consensus 89 -~~-~~~~~~lG~~~i~l~~~~~~---~~~~~Wy~l 119 (119)
T cd08685 89 -SK-SRDSGLLGCMSFGVKSIVNQ---KEISGWYYL 119 (119)
T ss_pred -CC-cCCCEEEEEEEecHHHhccC---ccccceEeC
Confidence 41 23578999999999999854 236789986
No 120
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.59 E-value=7.2e-15 Score=137.07 Aligned_cols=87 Identities=17% Similarity=0.289 Sum_probs=78.2
Q ss_pred cEEEEEEEEeecCC----------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEec-CCCceEEEEEEecCCCC
Q 001987 4 TRLYVYVLQGQDLL----------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHN-IDDEELVVSVFQHNDDS 72 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~----------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~-~~~~~L~~~V~D~d~~~ 72 (985)
|.|.|+|++|+||+ .+||||+|+++++++||+++++++||+|||+|.|.+.. .....|.|+|||+|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d--- 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD--- 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC---
Confidence 57999999999998 17999999999889999999999999999999999853 34468999999999
Q ss_pred CCCCCCCCeeEEEEEeCcccccc
Q 001987 73 GLFGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 73 ~~~~~~d~~lG~~~i~L~~l~~~ 95 (985)
+ .++|++||++.++|.++...
T Consensus 78 ~--~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 78 K--FSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred C--CCCCcceEEEEEEHHHHHhh
Confidence 4 57999999999999999876
No 121
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.59 E-value=1.1e-14 Score=140.07 Aligned_cols=114 Identities=18% Similarity=0.356 Sum_probs=93.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
.|.|+|++|+ |...+..+.+||||+++++++ ..+|+++++++||+|||.|.|.+. ....|.|+|||+|. ++.|++
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~-~~~~~~ 78 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHT-LKADVL 78 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCC-CCCCcE
Confidence 6899999999 555555889999999999987 899999999999999999999953 45799999999998 789999
Q ss_pred cceEEEEeeccccCcc-----cceEEEccccc--cCCcceeEEEEE
Q 001987 616 LGHAEINFLKHTSTEL-----ADMWVSLEGKL--AQSAQSKVHLRI 654 (985)
Q Consensus 616 lG~~~i~l~~l~~~~~-----~~~w~~L~~~~--~~~~~g~l~l~~ 654 (985)
||++.++|.++..... ...|++|.... .....|.|++.+
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999765322 23589887433 234578887764
No 122
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.59 E-value=2e-14 Score=139.91 Aligned_cols=124 Identities=17% Similarity=0.377 Sum_probs=99.3
Q ss_pred CcEEEEEEEEeecCC-CCCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCC
Q 001987 3 STRLYVYVLQGQDLL-AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGE 80 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-~~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~ 80 (985)
...|.|.|++|++|+ +.+|||.|.+++++ .||+++.++.||.|+|+|.|.. .+....|.|.||+.++..+ ...+++
T Consensus 10 ~~sL~v~V~EAk~Lp~~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~-~~~~~~l~v~v~k~~~~~~-~~~~~~ 87 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSN-LPPVSVITVNLYRESDKKK-KKDKSQ 87 (146)
T ss_pred EEEEEEEEEEccCCCCcCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecC-CCcccEEEEEEEEccCccc-cccCCc
Confidence 467999999999999 78999999999987 7999999999999999999985 3456789999987662211 012678
Q ss_pred eeEEEEEeCccccccCCCCCCCeEEEeecCCCCCC------CCccccEEEEEEEEEec
Q 001987 81 LMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKF------TNKDCGKILLTISLNGK 132 (985)
Q Consensus 81 ~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~------~~~~~G~I~lsl~~~~~ 132 (985)
+||++.||+.++..+ .....||+|.... +++ .....|.|+|.+.|.+.
T Consensus 88 ~IG~V~Ip~~~l~~~---~~ve~Wfpl~~~~-~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 88 LIGTVNIPVTDVSSR---QFVEKWYPVSTPK-GNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred EEEEEEEEHHHhcCC---CcccEEEEeecCC-CCCccccccccCCCCEEEEEEEEEEe
Confidence 999999999999854 4588999999443 322 13456899999999763
No 123
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.59 E-value=2e-15 Score=147.48 Aligned_cols=103 Identities=20% Similarity=0.304 Sum_probs=89.1
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||+..|..|.+||||++++. + .+.+|+++++++||.|||+|.|.+.. .....|.|+|||+|
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 45899999999999999999999999999984 2 25789999999999999999999642 23558999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. ++++++||++.+++.. .+.....|++|..
T Consensus 94 ~-~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 94 R-VTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred C-CCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 8 8999999999999998 4556788999865
No 124
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=7.9e-15 Score=137.92 Aligned_cols=99 Identities=27% Similarity=0.444 Sum_probs=85.2
Q ss_pred CCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCccceEEEEeecccc-Cc
Q 001987 553 MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTS-TE 630 (985)
Q Consensus 553 ~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~-~~ 630 (985)
.+|.+||||+++++++ ..+|+++++++||+|||.|.|.+.+.....|.|.|||+|. + ++++||++.++|.++.. ..
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-~-~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRD-R-HDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCC-C-CCCeEEEEEecHHHHHhhhh
Confidence 3789999999999875 5799999999999999999999755556789999999998 7 89999999999999754 45
Q ss_pred ccceEEEccccccCCcceeEEEEEeee
Q 001987 631 LADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 631 ~~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
....|++|.+ ..+|+|++++.+.
T Consensus 87 ~~~~w~~L~~----~~~G~i~~~~~~~ 109 (111)
T cd04052 87 VGQQWFPLSG----NGQGRIRISALWK 109 (111)
T ss_pred ccceeEECCC----CCCCEEEEEEEEe
Confidence 5689999986 3579999998764
No 125
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.58 E-value=1e-14 Score=140.62 Aligned_cols=100 Identities=27% Similarity=0.457 Sum_probs=84.5
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEEC---CeEEeecCccCCCCCeEeeEEEEE-Ee--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~---~~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~~L~~~V~D~d 69 (985)
.++|.|+|++|+||+ .+||||+|.+. .++.||+++++++||.|||+|.|. ++ +.....|.|.|||+|
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 468999999999998 46999999996 345799999999999999999994 54 345568999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.++|.++...++ .....|.+|+
T Consensus 95 ---~--~~~d~~lG~~~i~L~~l~~~~~-~~~~~~~~~~ 127 (128)
T cd08388 95 ---R--YSRDDVIGEVVCPLAGADLLNE-GELLVSREIQ 127 (128)
T ss_pred ---C--CCCCceeEEEEEeccccCCCCC-ceEEEEEecc
Confidence 5 5789999999999999987643 2367899886
No 126
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.58 E-value=1e-14 Score=143.69 Aligned_cols=99 Identities=24% Similarity=0.423 Sum_probs=86.1
Q ss_pred EEEEEEEEeecCC-----C---------------CCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEe-cCCCceEEE
Q 001987 5 RLYVYVLQGQDLL-----A---------------KDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVV 63 (985)
Q Consensus 5 ~L~V~V~~Ar~L~-----~---------------~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~-~~~~~~L~~ 63 (985)
+|.|+|++|++|+ . +||||+|.+++++.+|+++++++||+|||+|.|.+. ....+.|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 4899999999999 1 699999999999999999999999999999999974 345679999
Q ss_pred EEEecCCCCCCCCCCCCeeEEEEEeCccccccCCC----CCCCeEEEee
Q 001987 64 SVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNH----MLPPTWFSLE 108 (985)
Q Consensus 64 ~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~----~~~~~W~~L~ 108 (985)
+|||+| . .++|++||++.++|.++...+.. ...+.|+.|.
T Consensus 81 ~v~D~d---~--~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 81 QIRDWD---R--VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred EEEECC---C--CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 999999 4 57999999999999998776432 2568999998
No 127
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.58 E-value=2.5e-15 Score=145.84 Aligned_cols=103 Identities=20% Similarity=0.219 Sum_probs=86.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C--EEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---G--KTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~--~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||+..|..|.+||||++++. . .+.||+++++++||+|||+|.|.+.. .....|.|+|||+|
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 34899999999999999999999999999993 2 25689999999999999999999643 34568999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. ++++++||++.|.... .+...+.|..+..
T Consensus 94 ~-~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 94 E-DGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred C-CCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 8 7999999999997664 4555667766654
No 128
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.58 E-value=2.2e-14 Score=139.16 Aligned_cols=114 Identities=21% Similarity=0.333 Sum_probs=92.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------------CEEEEeeeccCCCCCeE-eEEEEEEeecCCCCEEEEE
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN-------------GKTRTSSVQLQTCDPQW-HDILEFDAMEEPPSVLDVE 602 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-------------~~~~kT~~~~~tlnP~W-ne~f~f~v~~~~~~~L~v~ 602 (985)
+..|.+++|+||+ ++..|++||||++.+. +++++|+++++++||+| ||+|.|.+. ....|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4689999999998 7888999999999994 24789999999999999 999999963 45689999
Q ss_pred EEecCCCCCC---CCccceEEEEeeccccCc---ccceEEEccccc-cCCcceeEEEEE
Q 001987 603 VFDFDGPFDQ---ATSLGHAEINFLKHTSTE---LADMWVSLEGKL-AQSAQSKVHLRI 654 (985)
Q Consensus 603 V~D~d~~~~~---dd~lG~~~i~l~~l~~~~---~~~~w~~L~~~~-~~~~~g~l~l~~ 654 (985)
|||++. .++ +++||++.|++.++..+. ....|++|.... ....+|.|.|++
T Consensus 79 V~D~~~-~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFA-KSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCC-CCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999875 233 799999999999986542 356699998532 334568888775
No 129
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.58 E-value=1e-14 Score=141.54 Aligned_cols=102 Identities=22% Similarity=0.330 Sum_probs=84.4
Q ss_pred CeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEe
Q 001987 535 GWVLTVALVEGVNLASSEM--TGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFD 605 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~--~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D 605 (985)
.+.|.|.|++|+||++.|. .+.+||||++++.. .+.||+++++++||+|||.|.|.+... ....|.|+|||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 4689999999999999983 35599999999853 256899999999999999999996432 25689999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCcccceEEEcc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
+|. ++++|+||++.+++.. .+.....|..+.
T Consensus 94 ~d~-~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 94 QDS-PGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred CCC-CcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 999 8999999999999975 444456676654
No 130
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.57 E-value=1.1e-14 Score=141.51 Aligned_cols=103 Identities=26% Similarity=0.409 Sum_probs=91.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC-CCCEEEEEEEecCCC
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE-PPSVLDVEVFDFDGP 609 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~-~~~~L~v~V~D~d~~ 609 (985)
+.|+|+|++|+||+..+..+.+||||++.+. ....+|++++++.||.|||+|.|.+... ....|.|+|||+|.
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~- 91 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR- 91 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC-
Confidence 6899999999999999988999999999996 3678999999999999999999996432 35689999999998
Q ss_pred CCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 610 FDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
++++++||++.++|.++... ....||+|..
T Consensus 92 ~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 78999999999999998754 6788999986
No 131
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.57 E-value=1.5e-14 Score=139.08 Aligned_cols=98 Identities=27% Similarity=0.465 Sum_probs=85.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC---CeEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDD 71 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~ 71 (985)
.+.|.|+|++|+||+ .+||||+|+++ ...++|+++++++||.|||+|.|.++ ......|.|+|||++
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~-- 92 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD-- 92 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC--
Confidence 478999999999998 68999999995 34589999999999999999999986 335678999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
. .+++++||++.++|.++..++ ....||+|+
T Consensus 93 -~--~~~~~~iG~~~i~l~~~~~~~---~~~~W~~l~ 123 (124)
T cd08387 93 -Q--FSRDECIGVVELPLAEVDLSE---KLDLWRKIQ 123 (124)
T ss_pred -C--CCCCceeEEEEEecccccCCC---CcceEEECc
Confidence 4 578999999999999998663 467899986
No 132
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.57 E-value=1.4e-14 Score=138.92 Aligned_cols=97 Identities=27% Similarity=0.485 Sum_probs=84.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEE-Ee--cCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~~L~~~V~D~d~ 70 (985)
.++|.|+|++|+||+ .+||||++.+.+ ++.||+++++ +||+|||+|.|. +. ......|.|.|||++
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~- 92 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE- 92 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC-
Confidence 478999999999998 689999988853 5689999988 999999999998 65 456789999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.++|.++..+ .....||+|+
T Consensus 93 --~--~~~~~~lG~~~i~L~~l~~~---~~~~~w~~L~ 123 (124)
T cd08389 93 --R--MRKERLIGEKVVPLSQLNLE---GETTVWLTLE 123 (124)
T ss_pred --C--cccCceEEEEEEeccccCCC---CCceEEEeCC
Confidence 5 57899999999999999765 3578999997
No 133
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.57 E-value=1e-14 Score=141.94 Aligned_cols=93 Identities=24% Similarity=0.267 Sum_probs=82.6
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CEEEEeeeccCCCCCeEeEEEEEEeecC----CCCEEEEEE
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-------GKTRTSSVQLQTCDPQWHDILEFDAMEE----PPSVLDVEV 603 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-------~~~~kT~~~~~tlnP~Wne~f~f~v~~~----~~~~L~v~V 603 (985)
.+.|+|+|++|++|+..+..|.+||||+|++. ...++|+++++|+||+|||+|.|.+... ....|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 35899999999999999989999999999995 3578999999999999999999996432 356899999
Q ss_pred EecCCCCCCCCccceEEEEeecccc
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHTS 628 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~ 628 (985)
||+|. +++|++||++.++|.++..
T Consensus 95 ~d~d~-~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 95 KDYDL-LGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EecCC-CCCCcEeEEEEEeHHHCCc
Confidence 99998 7889999999999999764
No 134
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.57 E-value=2.2e-14 Score=138.49 Aligned_cols=100 Identities=26% Similarity=0.467 Sum_probs=85.1
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||+|++. ..+++|+++++++||.|||+|.|.+. ......|.|.|||.+
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~ 94 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK 94 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence 478999999999998 78999999996 35689999999999999999999985 345689999999998
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
.+..+++++||++.++|.++..++ ....||+|.
T Consensus 95 ---~~~~~~~~~iG~~~i~l~~l~~~~---~~~~W~~L~ 127 (127)
T cd04030 95 ---SFLSREKKLLGQVLIDLSDLDLSK---GFTQWYDLT 127 (127)
T ss_pred ---cccCCCCceEEEEEEecccccccC---CccceEECc
Confidence 421268999999999999997652 468899984
No 135
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.57 E-value=2.1e-14 Score=138.01 Aligned_cols=98 Identities=35% Similarity=0.593 Sum_probs=84.8
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDD 71 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~ 71 (985)
.+.|.|+|++|+||+ .+||||+|++.+ ..++|+++++++||.|||+|.|.++ ......|.|+|||++
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d-- 92 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD-- 92 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC--
Confidence 578999999999998 689999999964 4579999999999999999999985 234678999999999
Q ss_pred CCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 72 SGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 72 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.++|.++..+ .....|++|+
T Consensus 93 -~--~~~~~~lG~~~i~l~~~~~~---~~~~~W~~l~ 123 (124)
T cd08385 93 -R--FSKHDLIGEVRVPLLTVDLG---HVTEEWRDLE 123 (124)
T ss_pred -C--CCCCceeEEEEEecCcccCC---CCcceEEEcc
Confidence 5 57899999999999998764 2467999986
No 136
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.56 E-value=8.9e-15 Score=139.71 Aligned_cols=98 Identities=22% Similarity=0.286 Sum_probs=87.0
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCE-------EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCC---CCC
Q 001987 542 LVEGVNLASSEMTGLSDPYVVFTCNGK-------TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG---PFD 611 (985)
Q Consensus 542 v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~---~~~ 611 (985)
.++|++|+..|..|.+||||++++.+. .++|+++++++||+|||+|.|.+..+....|.|+|||+|. .++
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 489999999999999999999999754 4899999999999999999998655566789999999995 148
Q ss_pred CCCccceEEEEeeccccCcccceEEEcc
Q 001987 612 QATSLGHAEINFLKHTSTELADMWVSLE 639 (985)
Q Consensus 612 ~dd~lG~~~i~l~~l~~~~~~~~w~~L~ 639 (985)
+|++||++.+++.++..+.....|++|.
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 9999999999999998887888899994
No 137
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.56 E-value=1.8e-14 Score=138.61 Aligned_cols=98 Identities=28% Similarity=0.574 Sum_probs=82.6
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEe
Q 001987 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQ 67 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D 67 (985)
..++|.|+|++|+||+ .+||||+|++.+ .+++|+++++++||.|||+|.|.+. +.....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 3578999999999998 689999999974 5689999999999999999999853 2356899999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 68 HNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 68 ~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
++ + .+++++||++.++|.+.... ....||+|+
T Consensus 94 ~~---~--~~~~~~iG~~~i~l~~~~~~----~~~~W~~L~ 125 (125)
T cd04031 94 YD---R--DGENDFLGEVVIDLADALLD----DEPHWYPLQ 125 (125)
T ss_pred CC---C--CCCCcEeeEEEEeccccccc----CCcceEECc
Confidence 99 4 57899999999999994322 246899985
No 138
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.56 E-value=4.9e-14 Score=133.94 Aligned_cols=112 Identities=22% Similarity=0.293 Sum_probs=87.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecCCCCCCCC
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d~~~~~dd 614 (985)
|+|+|++|+||+.. |.+||||+++++++ .++|+++++ +||.|||+|.|.+... ....|.|.|||.+. .+++.
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~-~~~~~ 76 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS-KDRDI 76 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEeccc-CCCee
Confidence 78999999999986 79999999999985 479999988 9999999999996432 23467888888776 55565
Q ss_pred ccceEEEEeeccccCcccceEEEccccc-cCCcceeEEEEEee
Q 001987 615 SLGHAEINFLKHTSTELADMWVSLEGKL-AQSAQSKVHLRIFL 656 (985)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~~~w~~L~~~~-~~~~~g~l~l~~~l 656 (985)
++|+ ++|..+..+...+.|++|.+.. .....|+|+|.+.|
T Consensus 77 ~~g~--v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 77 VIGK--VALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEE--EEecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 5665 5555555577789999998743 34568999999864
No 139
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.55 E-value=6.8e-15 Score=143.82 Aligned_cols=104 Identities=20% Similarity=0.343 Sum_probs=88.4
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||+..+..|.+||||++++. + .+.+|+++++++||+|||+|.|.+... ....|.|+|||+|
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 56899999999999999999999999999983 2 357899999999999999999996422 3468999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEcccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (985)
. ++++++||++.+++.+. +.....|+++...
T Consensus 94 ~-~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~ 124 (136)
T cd08405 94 R-LSRNDLIGKIYLGWKSG--GLELKHWKDMLSK 124 (136)
T ss_pred C-CCCCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence 8 79999999999999875 4456778777653
No 140
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.4e-14 Score=164.19 Aligned_cols=172 Identities=21% Similarity=0.283 Sum_probs=127.5
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CEEEEeeeccCCCCCeEeEEEEEEee--cCCCCEEEEEEEecCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---GKTRTSSVQLQTCDPQWHDILEFDAM--EEPPSVLDVEVFDFDGP 609 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~~~~kT~~~~~tlnP~Wne~f~f~v~--~~~~~~L~v~V~D~d~~ 609 (985)
...|+|+|++|++|+++|..|.+||||++++. ..+++|++.++|+||+|||+|.|.+. ......|.++|||+|+
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr- 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR- 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC-
Confidence 34799999999999999977889999999995 46899999999999999999999953 2456799999999999
Q ss_pred CCCCCccceEEEEeeccccCcccceEEEcccc--ccCCcceeEEEEEeeecCCCcchh---------------------h
Q 001987 610 FDQATSLGHAEINFLKHTSTELADMWVSLEGK--LAQSAQSKVHLRIFLENNNGVETI---------------------K 666 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~--~~~~~~g~l~l~~~ls~~~~~~~l---------------------~ 666 (985)
|++|++||++.++|..+........|.+|... ......|+|.+.+.|....+.-.+ +
T Consensus 245 fsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk 324 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVK 324 (421)
T ss_pred cccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEE
Confidence 99999999999999998888778899999873 222233688887766555332110 1
Q ss_pred hhhhhhhhhccccceeEeeeeEeeeeccccCcceEEEEecccccc
Q 001987 667 EYLTKMEKEVGKKGRLFLSARIVGFYANLFGNKTKFFFLWEDIED 711 (985)
Q Consensus 667 ~~l~~lek~i~~~gr~y~s~~~~~f~snif~~~~~~~i~~~di~~ 711 (985)
-++....+.+.++ .+..--|-.+.+|++.+.|-||-+++.+
T Consensus 325 ~~l~~~~~~~~kk----kT~~~~~~~npv~nesf~F~vp~~~l~~ 365 (421)
T KOG1028|consen 325 VTLLDGDKRLSKK----KTSVKKKTLNPVFNETFVFDVPPEQLAE 365 (421)
T ss_pred EEEecCCceeeee----eeecccCCCCCcccccEEEeCCHHHhhe
Confidence 1111111111111 1111224456799999999999777765
No 141
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.55 E-value=1.9e-14 Score=138.58 Aligned_cols=111 Identities=24% Similarity=0.428 Sum_probs=92.4
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECC-eEEeecCcc-CCCCCeEeeEEEEEEecC----CCceEEEEEEecCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILK-NNSNPVWNEEFVFRVHNI----DDEELVVSVFQHNDDS 72 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~kT~v~~-~t~nP~wnE~f~f~v~~~----~~~~L~~~V~D~d~~~ 72 (985)
.|+|+|++|++|+ .+||||+|++++ ++++|++++ ++.||.|||+|.|.+... ....|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~--- 77 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER--- 77 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC---
Confidence 4899999999999 689999999988 789999986 589999999999998644 2789999999999
Q ss_pred CCCCCCCCeeEEEEEeCccccccCCC--CCCCeEEEeecCCCCCCCCccccEEEE
Q 001987 73 GLFGSSGELMGRVRVPVSSIAAEDNH--MLPPTWFSLETPKTRKFTNKDCGKILL 125 (985)
Q Consensus 73 ~~~~~~d~~lG~~~i~L~~l~~~~~~--~~~~~W~~L~~~~~~~~~~~~~G~I~l 125 (985)
+ .+++++||++.++|.++...... .....||.|.++ . ++..|.|.+
T Consensus 78 ~--~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-~----g~~~G~~~~ 125 (125)
T cd04051 78 P--SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-S----GKPQGVLNF 125 (125)
T ss_pred C--CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-C----CCcCeEEeC
Confidence 4 46899999999999999876431 245789999943 3 456788864
No 142
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.55 E-value=5e-14 Score=136.16 Aligned_cols=115 Identities=22% Similarity=0.314 Sum_probs=96.5
Q ss_pred EEEEEEEEeecCCCCC--CCCCCCcEEEEEE------CCEEEEeeeccCCC-CCeEeEEEEEEeecCCCCEEEEEEEecC
Q 001987 537 VLTVALVEGVNLASSE--MTGLSDPYVVFTC------NGKTRTSSVQLQTC-DPQWHDILEFDAMEEPPSVLDVEVFDFD 607 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d--~~g~~DPyv~v~~------~~~~~kT~~~~~tl-nP~Wne~f~f~v~~~~~~~L~v~V~D~d 607 (985)
.|+|+|++|+||+..+ ..+.+||||++++ ...+.+|+++.++. ||.|||+|.|.+.......|.|+|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999988 5789999999999 34678999987765 9999999999976554568999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccccccC-CcceeEEEEEee
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRIFL 656 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~~l 656 (985)
. + ++++||++.+++.++..+ ..|++|.++.+. ...|+|.+++.+
T Consensus 83 ~-~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 S-G-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred C-C-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 8 6 899999999999998543 468999875554 567889888864
No 143
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.55 E-value=6.3e-15 Score=144.02 Aligned_cols=103 Identities=25% Similarity=0.436 Sum_probs=87.7
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d 607 (985)
.|.|+|+|++|++|+..|..|.+||||++++. + .+.+|+++++++||.|||+|.|.+... ....|.|+|||+|
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~ 93 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD 93 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence 46899999999999999999999999999994 2 357899999999999999999996432 2348999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. +++|++||++.|++.. .+.....|+++..
T Consensus 94 ~-~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~ 123 (136)
T cd08402 94 R-IGKNDPIGKVVLGCNA--TGAELRHWSDMLA 123 (136)
T ss_pred C-CCCCceeEEEEECCcc--CChHHHHHHHHHh
Confidence 8 7999999999999976 3455677888764
No 144
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.54 E-value=6.7e-14 Score=135.76 Aligned_cols=116 Identities=24% Similarity=0.401 Sum_probs=94.0
Q ss_pred EEEEEEEEeecCC-----CCCcEEEEEECC-------------eEEeecCccCCCCCeE-eeEEEEEEecCCCceEEEEE
Q 001987 5 RLYVYVLQGQDLL-----AKDSYVKVQIGK-------------HKSKSRILKNNSNPVW-NEEFVFRVHNIDDEELVVSV 65 (985)
Q Consensus 5 ~L~V~V~~Ar~L~-----~~DPyv~v~l~~-------------~~~kT~v~~~t~nP~w-nE~f~f~v~~~~~~~L~~~V 65 (985)
...|++++|+||+ ++||||++++.+ ++++|+++++++||+| ||+|.|.+. ..+.|.|+|
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEEE
Confidence 3579999999998 799999999952 3689999999999999 999999983 456899999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEE
Q 001987 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTI 127 (985)
Q Consensus 66 ~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl 127 (985)
||++...+ ...+++||++.+||.++...+.......||+|+ ++.. .....|+|.+.+
T Consensus 80 ~D~~~~~~--~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~-k~~~--~s~v~G~~~l~~ 136 (137)
T cd08691 80 KDKFAKSR--PIIRRFLGKLSIPVQRLLERHAIGDQELSYTLG-RRTP--TDHVSGQLTFRF 136 (137)
T ss_pred EecCCCCC--ccCCceEEEEEEEHHHhcccccCCceEEEEECC-cCCC--CCcEEEEEEEEe
Confidence 99872111 113799999999999998776555577899999 5543 367889998875
No 145
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.54 E-value=2.2e-14 Score=134.92 Aligned_cols=94 Identities=23% Similarity=0.455 Sum_probs=80.6
Q ss_pred cEEEEEEEEeecCC-------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEEEecC---CCceEEEEEEecCC
Q 001987 4 TRLYVYVLQGQDLL-------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVHNI---DDEELVVSVFQHND 70 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~-------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~---~~~~L~~~V~D~d~ 70 (985)
|.|+|+|++|+||+ .+||||+|++.+ ..++|+++++|+||.|||+|.|.+... ....|.|+|||+|
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d- 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD- 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC-
Confidence 57999999999998 579999999953 458999999999999999999987432 4578999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .++|++||++.++|.++.. ...|+++.
T Consensus 80 --~--~~~dd~lG~~~i~l~~l~~------~~~~~~~~ 107 (111)
T cd04041 80 --R--FTADDRLGRVEIDLKELIE------DRNWMGRR 107 (111)
T ss_pred --C--CCCCCcceEEEEEHHHHhc------CCCCCccc
Confidence 4 5789999999999999984 34587775
No 146
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.53 E-value=3.7e-14 Score=137.71 Aligned_cols=84 Identities=27% Similarity=0.487 Sum_probs=74.0
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
.++|.|+|++|+||+ .+||||+|++.+ .+.||+++++++||+|||+|.|.++ ......|.|+|||+|
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 468999999999998 689999999963 2578999999999999999999986 467789999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCcc
Q 001987 70 DDSGLFGSSGELMGRVRVPVSS 91 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~ 91 (985)
+ .+++++||++.++...
T Consensus 94 ---~--~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 94 ---E--DGKTPNVGHVIIGPAA 110 (136)
T ss_pred ---C--CCCCCeeEEEEECCCC
Confidence 4 5799999999997654
No 147
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.53 E-value=4.2e-14 Score=137.93 Aligned_cols=98 Identities=24% Similarity=0.501 Sum_probs=85.0
Q ss_pred EEEEEEEeecCC-----CCCcEEEEEEC----CeEEeecCccCCCCCeEeeEEEEEEecC---------------CCceE
Q 001987 6 LYVYVLQGQDLL-----AKDSYVKVQIG----KHKSKSRILKNNSNPVWNEEFVFRVHNI---------------DDEEL 61 (985)
Q Consensus 6 L~V~V~~Ar~L~-----~~DPyv~v~l~----~~~~kT~v~~~t~nP~wnE~f~f~v~~~---------------~~~~L 61 (985)
|.|+|++|+||+ .+||||+|+++ ..+++|++++++.||.|||+|.|.+... ....|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 689999999998 68999999998 6779999999999999999999997543 46789
Q ss_pred EEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCC
Q 001987 62 VVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111 (985)
Q Consensus 62 ~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~ 111 (985)
.|+|||.+ . .++++|||++.++|.++... .....||+|.+..
T Consensus 81 ~i~V~d~~---~--~~~~~~IG~~~i~l~~l~~~---~~~~~W~~L~~~~ 122 (137)
T cd08675 81 RVELWHAS---M--VSGDDFLGEVRIPLQGLQQA---GSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEcCC---c--CcCCcEEEEEEEehhhccCC---CcccceEecCCcC
Confidence 99999999 4 57899999999999998854 3468999998443
No 148
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.53 E-value=2.8e-14 Score=139.12 Aligned_cols=105 Identities=20% Similarity=0.276 Sum_probs=85.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d 607 (985)
.|.|+|+|++|+||+..|..|.+||||++++. + ++.+|+++++|+||+|||+|.|.+... ....|.|+|||+|
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d 92 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHN 92 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 46899999999999999999999999999983 2 357899999999999999999996332 2347999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEcccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (985)
. .+++++||++.|...... +.....|..|...
T Consensus 93 ~-~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~ 124 (135)
T cd08410 93 V-KSSNDFIGRIVIGQYSSG-PSETNHWRRMLNS 124 (135)
T ss_pred C-CCCCcEEEEEEEcCccCC-chHHHHHHHHHhC
Confidence 8 699999999986653322 2235778888653
No 149
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.53 E-value=5.4e-14 Score=134.90 Aligned_cols=97 Identities=27% Similarity=0.531 Sum_probs=83.5
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~ 68 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .+++|+++++++||.|||+|.|.++ +.....|.|+|||.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 92 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH 92 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence 578999999999997 679999999853 4589999999999999999999985 23467899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEe
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (985)
+ + .+++++||++.++|.++..+. ....||+|
T Consensus 93 ~---~--~~~~~~iG~~~i~l~~l~~~~---~~~~w~~l 123 (123)
T cd08521 93 D---R--FGRNTFLGEVEIPLDSWDLDS---QQSEWYPL 123 (123)
T ss_pred C---C--CcCCceeeEEEEecccccccC---CCccEEEC
Confidence 9 4 578999999999999997552 36789987
No 150
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.53 E-value=6.4e-14 Score=134.83 Aligned_cols=98 Identities=26% Similarity=0.509 Sum_probs=84.4
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC---CeEEeecCccCCCCCeEeeEEEEEE-e--cCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRV-H--NIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~---~~~~kT~v~~~t~nP~wnE~f~f~v-~--~~~~~~L~~~V~D~d~ 70 (985)
.+.|.|+|++|+||+ .+||||+|++. .++.+|+++++++||.|||+|.|.+ + ......|.|+|||++
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d- 93 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD- 93 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC-
Confidence 568999999999997 68999999994 4568999999999999999999984 2 245578999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.++|.++.... ....|+.|.
T Consensus 94 --~--~~~~~~iG~~~i~l~~l~~~~---~~~~W~~l~ 124 (125)
T cd08386 94 --R--FSRNDPIGEVSLPLNKVDLTE---EQTFWKDLK 124 (125)
T ss_pred --C--CcCCcEeeEEEEecccccCCC---CcceEEecC
Confidence 4 578999999999999998652 478899986
No 151
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.53 E-value=1.1e-14 Score=142.08 Aligned_cols=103 Identities=26% Similarity=0.445 Sum_probs=86.9
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d 607 (985)
.+.|+|+|++|++|++.|..|.+||||++++. + .+.+|+++++++||.|||+|.|.+... ....|.|+|||+|
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~ 92 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYD 92 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence 56899999999999999999999999999984 2 367899999999999999999996432 2347999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. ++++++||++.|++.. .+.....|+++..
T Consensus 93 ~-~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~ 122 (134)
T cd08403 93 R-VGHNELIGVCRVGPNA--DGQGREHWNEMLA 122 (134)
T ss_pred C-CCCCceeEEEEECCCC--CCchHHHHHHHHH
Confidence 8 7999999999999873 3455677888764
No 152
>PLN03008 Phospholipase D delta
Probab=99.53 E-value=4.9e-14 Score=166.92 Aligned_cols=101 Identities=23% Similarity=0.359 Sum_probs=86.3
Q ss_pred CCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCccceEEEEeeccccCcccc
Q 001987 555 GLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELAD 633 (985)
Q Consensus 555 g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~ 633 (985)
++|||||+|.++++ ..+|+++++++||+|||+|.|.+ ..+...|.|+|||+|. ++ +|+||++.|||.++..+...+
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~v-ah~~s~L~f~VkD~D~-~g-aD~IG~a~IPL~~L~~Ge~vd 151 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISI-AHPFAYLEFQVKDDDV-FG-AQIIGTAKIPVRDIASGERIS 151 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEe-cCCCceEEEEEEcCCc-cC-CceeEEEEEEHHHcCCCCceE
Confidence 47899999999875 56999999999999999999995 4566799999999998 76 589999999999999999999
Q ss_pred eEEEccccccCC--cceeEEEEEeeec
Q 001987 634 MWVSLEGKLAQS--AQSKVHLRIFLEN 658 (985)
Q Consensus 634 ~w~~L~~~~~~~--~~g~l~l~~~ls~ 658 (985)
.|++|.+..+.. .+++||+++.|..
T Consensus 152 ~Wl~Ll~~~~kp~k~~~kl~v~lqf~p 178 (868)
T PLN03008 152 GWFPVLGASGKPPKAETAIFIDMKFTP 178 (868)
T ss_pred EEEEccccCCCCCCCCcEEEEEEEEEE
Confidence 999998754433 3578999986543
No 153
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.52 E-value=4.7e-14 Score=136.87 Aligned_cols=84 Identities=25% Similarity=0.463 Sum_probs=74.5
Q ss_pred CcEEEEEEEEeecCC--------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEe
Q 001987 3 STRLYVYVLQGQDLL--------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQ 67 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~--------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D 67 (985)
.++|.|.|++|+||. .+||||+|++.. .++||+++++++||+|||+|.|.++ ......|.|+|||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 578999999999998 279999999974 2478999999999999999999997 4567889999999
Q ss_pred cCCCCCCCCCCCCeeEEEEEeCcc
Q 001987 68 HNDDSGLFGSSGELMGRVRVPVSS 91 (985)
Q Consensus 68 ~d~~~~~~~~~d~~lG~~~i~L~~ 91 (985)
+| + .+++++||++.+++..
T Consensus 94 ~d---~--~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 94 QD---S--PGQSLPLGRCSLGLHT 112 (138)
T ss_pred CC---C--CcCcceeceEEecCcC
Confidence 99 5 5799999999999865
No 154
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.51 E-value=1.5e-13 Score=127.73 Aligned_cols=80 Identities=19% Similarity=0.376 Sum_probs=69.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEec------
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDF------ 606 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~------ 606 (985)
|.|+|.+|+||+ |.+||||++.++. .+.+|+++++|+||+|||+|+|.+ . ....|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l-~-~s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIEL-E-GSQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEe-C-CCCEEEEEEEEccccccc
Confidence 589999999995 4699999999852 468999999999999999999995 3 467999999998
Q ss_pred -CCCCCCCCccceEEEEeec
Q 001987 607 -DGPFDQATSLGHAEINFLK 625 (985)
Q Consensus 607 -d~~~~~dd~lG~~~i~l~~ 625 (985)
|. .++|+++|++.|.|..
T Consensus 74 ~d~-~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 74 LDG-EGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccc-cCcccEEEEEEEEECH
Confidence 55 5889999999998865
No 155
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.51 E-value=2.4e-14 Score=139.61 Aligned_cols=104 Identities=27% Similarity=0.386 Sum_probs=91.0
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecCC--CCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~~--~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||+..+..+.+||||++++.+ .+.+|++++++.||.|||+|.|.+.... ...|.|+|||++
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~ 92 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD 92 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence 468999999999999999899999999999853 2578999999999999999999964432 578999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEcccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEGK 641 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~ 641 (985)
. ++++++||++.+++.+ .+...+.|++|...
T Consensus 93 ~-~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 93 S-VGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred C-CCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 8 6899999999999999 56667889999763
No 156
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.51 E-value=7.3e-14 Score=134.04 Aligned_cols=102 Identities=23% Similarity=0.370 Sum_probs=87.3
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecC---CCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEE---PPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~---~~~~L~v~V~D~ 606 (985)
.+.|+|+|++|++|++.+..+.+||||++++. ....+|+++++++||+|||.|.|..... ....|.|+|||+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 56899999999999999988999999999983 3478999999999999999999963322 246899999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (985)
+. + .+++||++.+++.++..+.....|+.|
T Consensus 94 ~~-~-~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 94 DR-F-GNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred CC-c-CCeeEEEEEEEcccCCCCcceEeeccC
Confidence 98 6 889999999999999887766666654
No 157
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.51 E-value=3.5e-13 Score=132.63 Aligned_cols=116 Identities=19% Similarity=0.341 Sum_probs=91.6
Q ss_pred EEEEEEEEeec--CC------CCCcEEEEEEC-----CeEEeecCccCCCCCeEeeEEEEEEecC--------CCceEEE
Q 001987 5 RLYVYVLQGQD--LL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVHNI--------DDEELVV 63 (985)
Q Consensus 5 ~L~V~V~~Ar~--L~------~~DPyv~v~l~-----~~~~kT~v~~~t~nP~wnE~f~f~v~~~--------~~~~L~~ 63 (985)
...++|..|++ |+ .+||||++++. .++.||+++++|+||+|||+|.|.|... ....|.|
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence 35667777777 44 58999999972 3679999999999999999999999522 2567999
Q ss_pred EEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 64 SVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 64 ~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
+|||.+ .| .++|++||++.++|..+.... ....|++|.+.+ ....|+|.+.+..-..
T Consensus 83 ~V~d~~---~f-~~~D~~iG~~~i~L~~l~~~~---~~~~~~~L~~~~-----k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 83 EVYHKG---GF-LRSDKLLGTAQVKLEPLETKC---EIHESVDLMDGR-----KATGGKLEVKVRLREP 139 (155)
T ss_pred EEEeCC---Cc-ccCCCeeEEEEEEcccccccC---cceEEEEhhhCC-----CCcCCEEEEEEEecCC
Confidence 999999 53 468999999999999997652 355699987332 3467899999988543
No 158
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.51 E-value=6.9e-14 Score=133.69 Aligned_cols=86 Identities=29% Similarity=0.480 Sum_probs=77.5
Q ss_pred cEEEEEEEEeecCC-----CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEE-ecCCCceEEEEEEecCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL-----AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRV-HNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v-~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
++|+|+|++|++|+ .+||||+|+++++++||+++++++||+|||+|.|.. .......|.|+|||++ . .+
T Consensus 28 ~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d---~--~s 102 (127)
T cd04032 28 ATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD---N--GW 102 (127)
T ss_pred EEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC---C--CC
Confidence 68999999999998 689999999999999999999999999999999974 3456789999999999 4 57
Q ss_pred CCCeeEEEEEeCccccc
Q 001987 78 SGELMGRVRVPVSSIAA 94 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~ 94 (985)
+|++||++.++|.....
T Consensus 103 ~dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 103 DDDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCCeeEEEEEEecCCce
Confidence 99999999999986653
No 159
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.50 E-value=2e-13 Score=129.77 Aligned_cols=110 Identities=22% Similarity=0.398 Sum_probs=84.5
Q ss_pred EEEEEEEeecCC---CCCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecC--CCceEEEEEEecCCCCCCCCCCC
Q 001987 6 LYVYVLQGQDLL---AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNI--DDEELVVSVFQHNDDSGLFGSSG 79 (985)
Q Consensus 6 L~V~V~~Ar~L~---~~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~--~~~~L~~~V~D~d~~~~~~~~~d 79 (985)
|.|+|++|+||+ .+||||++++++++ ++|+++++ +||.|||+|.|.++.. ....|.|.+||.+ . .+++
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~---~--~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKR---S--KDRD 75 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecc---c--CCCe
Confidence 889999999998 79999999998754 89999999 9999999999998532 3456777788877 3 3456
Q ss_pred CeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 80 ELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 80 ~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
.++|++.+ ..+..+ .....||+|. ++..+ ....|+|+|.+.|
T Consensus 76 ~~~g~v~l--~~~~~~---~~~~~w~~L~-~~~~~--~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVAL--SKLDLG---QGKDEWFPLT-PVDPD--SEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEEe--cCcCCC---CcceeEEECc-cCCCC--CCcCceEEEEEEC
Confidence 67776555 444333 2367899998 44332 4578999999876
No 160
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.50 E-value=2.5e-13 Score=130.49 Aligned_cols=115 Identities=23% Similarity=0.382 Sum_probs=93.8
Q ss_pred cEEEEEEEEeecCC-----CCCcEEEEEECCe-EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL-----AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGS 77 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~ 77 (985)
.+|.|+|++|+.+. .+||||+|+++++ .++|+++++++||.|||+|.|.+. ..+.|.|+|||++ . .+
T Consensus 2 ~~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~---~--~~ 74 (125)
T cd04021 2 SQLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHH---T--LK 74 (125)
T ss_pred ceEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCC---C--CC
Confidence 47999999998444 6999999999887 799999999999999999999983 4678999999999 4 57
Q ss_pred CCCeeEEEEEeCccccccCCCCCCC--eEEEeecCCCCCCCCccccEEEEEE
Q 001987 78 SGELMGRVRVPVSSIAAEDNHMLPP--TWFSLETPKTRKFTNKDCGKILLTI 127 (985)
Q Consensus 78 ~d~~lG~~~i~L~~l~~~~~~~~~~--~W~~L~~~~~~~~~~~~~G~I~lsl 127 (985)
++++||++.++|.++...+...... .|++|.++..+ .....|+|.+.+
T Consensus 75 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKG--SSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCC--cceeeeeEEEEe
Confidence 8999999999999998764433333 58999844421 246789988865
No 161
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.50 E-value=6.3e-14 Score=133.97 Aligned_cols=104 Identities=13% Similarity=0.202 Sum_probs=82.9
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---EEEEeeeccCCC-CCeEeEEEEEEeecC-CCCEEEEEEEe
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--G---KTRTSSVQLQTC-DPQWHDILEFDAMEE-PPSVLDVEVFD 605 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--~---~~~kT~~~~~tl-nP~Wne~f~f~v~~~-~~~~L~v~V~D 605 (985)
...|.|+|.|++|+||++.+..+.+||||++++- + .+.||+++++|+ ||+|||.|.|++... ....|.|+|||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d 90 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYS 90 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEe
Confidence 3467899999999999998667788999999883 2 467899999996 699999999997432 23489999999
Q ss_pred cCCCCCCCCccceEEEEeeccccCcccceEEEc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSL 638 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L 638 (985)
+|. .+++|+||++.+...... +...+.|...
T Consensus 91 ~~~-~~~n~~IG~v~lG~~~~~-~~~~~hW~~m 121 (135)
T cd08692 91 RSS-VRRKHFLGQVWISSDSSS-SEAVEQWKDT 121 (135)
T ss_pred CCC-CcCCceEEEEEECCccCC-chhhhhHHHH
Confidence 998 689999999999987632 2234566554
No 162
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.50 E-value=3e-14 Score=138.98 Aligned_cols=104 Identities=18% Similarity=0.318 Sum_probs=86.9
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C---EEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN---G---KTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~---~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~ 606 (985)
.+.|.|+|++|+||++.+..|.+||||++++. + .+++|+++++++||+|||+|.|.+.. .....|.|+|||+
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 56899999999999999999999999999994 2 25699999999999999999999643 3456999999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
|. ++++++||++.+++..... .....|..+..
T Consensus 94 ~~-~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 94 RK-MKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred CC-CCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 98 7999999999998875332 23456877753
No 163
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.49 E-value=1.4e-13 Score=134.95 Aligned_cols=86 Identities=34% Similarity=0.579 Sum_probs=79.3
Q ss_pred cEEEEEEEEeecCC-----CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL-----AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~-----~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
|.|+|+|++|+||+ .+||||++++++++++|+++++++||+|||+|.|.++++ ...|.|+|||++ + .++
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d---~--~~~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKD---T--FSK 75 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECC---C--CCC
Confidence 68999999999997 789999999999999999999999999999999999544 788999999999 5 578
Q ss_pred CCeeEEEEEeCcccccc
Q 001987 79 GELMGRVRVPVSSIAAE 95 (985)
Q Consensus 79 d~~lG~~~i~L~~l~~~ 95 (985)
|++||++.+++.++...
T Consensus 76 dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 76 DDSMGEAEIDLEPLVEA 92 (145)
T ss_pred CCEEEEEEEEHHHhhhh
Confidence 99999999999998765
No 164
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.49 E-value=2e-13 Score=130.96 Aligned_cols=98 Identities=26% Similarity=0.429 Sum_probs=84.3
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEEC---CeEEeecCccCCCCCeEeeEEEEEEec--CCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIG---KHKSKSRILKNNSNPVWNEEFVFRVHN--IDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~---~~~~kT~v~~~t~nP~wnE~f~f~v~~--~~~~~L~~~V~D~d~ 70 (985)
.+.|.|+|++|+||+ .+||||+|++. ...++|+++++++||.|||+|.|.++. .....|.|.|||.+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~- 91 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD- 91 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECC-
Confidence 578999999999998 57999999985 345899999999999999999999862 34578999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
. .+++++||++.++|.++.... ....|++|+
T Consensus 92 --~--~~~~~~iG~~~i~L~~l~~~~---~~~~w~~L~ 122 (123)
T cd08390 92 --R--FSRHCIIGHVLFPLKDLDLVK---GGVVWRDLE 122 (123)
T ss_pred --c--CCCCcEEEEEEEeccceecCC---CceEEEeCC
Confidence 4 568999999999999998763 356899987
No 165
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.49 E-value=2.1e-13 Score=131.09 Aligned_cols=97 Identities=26% Similarity=0.469 Sum_probs=85.2
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccC-CCCCeEeeEEEEEEecC---CCceEEEEEEecCCCCC
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKN-NSNPVWNEEFVFRVHNI---DDEELVVSVFQHNDDSG 73 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~-t~nP~wnE~f~f~v~~~---~~~~L~~~V~D~d~~~~ 73 (985)
+.|.|+|++|+||+ .+||||+|++.+...+|++.++ ++||.|||+|.|.+..+ ....|.|+|||.+ .
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~---~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD---N 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc---c
Confidence 57999999999998 7899999999988899999885 99999999999999644 3678999999999 4
Q ss_pred CCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 74 LFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 74 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
.+++++||++.++|.++...+ ....|+.|.
T Consensus 78 --~~~d~~iG~~~i~l~~l~~~~---~~~~~~~l~ 107 (124)
T cd04049 78 --FSDDDFIGEATIHLKGLFEEG---VEPGTAELV 107 (124)
T ss_pred --CCCCCeEEEEEEEhHHhhhCC---CCcCceEee
Confidence 468999999999999998653 357899998
No 166
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.48 E-value=4.3e-14 Score=138.01 Aligned_cols=104 Identities=16% Similarity=0.231 Sum_probs=86.9
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEecC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFD 607 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d 607 (985)
.+.|.|+|++|+||++.+ .+.+||||++++.. .+++|+++++++||+|||.|.|.+.. .....|.|+|||.|
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 358999999999999999 88899999999852 36689999999999999999999642 22368999999999
Q ss_pred CCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 608 GPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 608 ~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
. ++++++||++.|.......+...+.|..+-.
T Consensus 93 ~-~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 93 G-VRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred C-CCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 8 7999999999998765555666677776653
No 167
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.48 E-value=2.3e-13 Score=128.96 Aligned_cols=107 Identities=26% Similarity=0.454 Sum_probs=89.3
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECC-eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 6 LYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
|+|+|++|++|+ .+||||+|.+.+ ..++|+++.++.||.|||+|.|.+.....+.|.|+|||++ . .++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~---~--~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWD---R--GGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCC---C--CCC
Confidence 689999999998 689999999975 4489999999999999999999986556789999999999 4 578
Q ss_pred CCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEE
Q 001987 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILL 125 (985)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~l 125 (985)
+++||++.+++.++..+. ....|++|. +++ ....|.+.+
T Consensus 76 ~~~iG~~~~~l~~l~~~~---~~~~~~~L~-~~g----~~~~~~~~~ 114 (115)
T cd04040 76 DDLLGSAYIDLSDLEPEE---TTELTLPLD-GQG----GGKLGAVFL 114 (115)
T ss_pred CCceEEEEEEHHHcCCCC---cEEEEEECc-CCC----CccCceEEc
Confidence 999999999999987642 367899998 443 234566643
No 168
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.48 E-value=2e-13 Score=128.33 Aligned_cols=98 Identities=18% Similarity=0.380 Sum_probs=83.7
Q ss_pred CCCcEEEEEECCe-EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccC
Q 001987 18 AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAED 96 (985)
Q Consensus 18 ~~DPyv~v~l~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~ 96 (985)
.+||||+|+++++ .++|++++++.||.|||+|.|.+.+.....|.|.|||.+ . . ++++||++.++|.++....
T Consensus 12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~---~--~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDR---D--R-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECC---C--C-CCCeEEEEEecHHHHHhhh
Confidence 5899999999875 589999999999999999999996666788999999999 4 4 8999999999999986432
Q ss_pred CCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 97 NHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 97 ~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
.....||+|.+ ...|+|++++.|.|
T Consensus 86 --~~~~~w~~L~~--------~~~G~i~~~~~~~p 110 (111)
T cd04052 86 --SVGQQWFPLSG--------NGQGRIRISALWKP 110 (111)
T ss_pred --hccceeEECCC--------CCCCEEEEEEEEec
Confidence 23579999982 35799999999976
No 169
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.48 E-value=1.9e-13 Score=133.43 Aligned_cols=97 Identities=29% Similarity=0.517 Sum_probs=80.4
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC------eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK------HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~------~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~ 68 (985)
.++|.|+|++|+||+ .+||||++++.+ .++||+++++++||+|||+|.|.++ +.....|.|.|||.
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 579999999999998 689999999963 2479999999999999999999987 46778999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ + .+++++||++.+++.....+ ....|+.+.
T Consensus 94 ~---~--~~~~~~iG~v~l~~~~~~~~----~~~hW~~~l 124 (138)
T cd08408 94 R---K--MKRKEMIGWFSLGLNSSGEE----EEEHWNEMK 124 (138)
T ss_pred C---C--CCCCcEEEEEEECCcCCCch----HHHHHHHHH
Confidence 9 5 57999999999988754422 124566654
No 170
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.48 E-value=2.1e-13 Score=136.81 Aligned_cols=98 Identities=29% Similarity=0.514 Sum_probs=83.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~ 68 (985)
.++|.|+|++|+||+ .+||||+|++. ..++||+++++++||.|||+|.|.+. ......|.|+|||+
T Consensus 26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~ 105 (162)
T cd04020 26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDH 105 (162)
T ss_pred CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeC
Confidence 478999999999998 68999999984 25689999999999999999999842 33456899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ + .+++++||++.+++.++...+ ....|+.|.
T Consensus 106 d---~--~~~d~~lG~v~i~l~~~~~~~---~~~~w~~~~ 137 (162)
T cd04020 106 D---K--LSSNDFLGGVRLGLGTGKSYG---QAVDWMDST 137 (162)
T ss_pred C---C--CCCCceEEEEEEeCCccccCC---CccccccCC
Confidence 9 4 578999999999999987653 357888886
No 171
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.48 E-value=1.9e-13 Score=130.68 Aligned_cols=85 Identities=21% Similarity=0.430 Sum_probs=71.9
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCC-CCeEeeEEEEEEe-cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNS-NPVWNEEFVFRVH-NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~-nP~wnE~f~f~v~-~~~~~~L~~~V~D~d 69 (985)
.++|.|.|++|+||+ ..||||+|++.. .++||+++++|+ ||.|||+|.|+|+ +.....|.|+|||++
T Consensus 13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~ 92 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRS 92 (135)
T ss_pred CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCC
Confidence 578999999999998 458899999952 368999999995 6999999999997 334567888899998
Q ss_pred CCCCCCCCCCCeeEEEEEeCccc
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSI 92 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l 92 (985)
+ .+++++||++.++....
T Consensus 93 ---~--~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 93 ---S--VRRKHFLGQVWISSDSS 110 (135)
T ss_pred ---C--CcCCceEEEEEECCccC
Confidence 4 67999999999998764
No 172
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=4.6e-14 Score=157.03 Aligned_cols=124 Identities=23% Similarity=0.382 Sum_probs=104.0
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCC--
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPF-- 610 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~-- 610 (985)
.|...++++|+.|++|.++|..|++||||.+.++..+++|+++...+||+|||.|.|. .......+++.|||.|..+
T Consensus 292 kwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfe-chnstdrikvrvwded~dlks 370 (1283)
T KOG1011|consen 292 KWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFE-CHNSTDRIKVRVWDEDNDLKS 370 (1283)
T ss_pred ccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeee-ecCCCceeEEEEecCcccHHH
Confidence 3566899999999999999999999999999999999999999999999999999999 4566789999999998522
Q ss_pred --------CCCCccceEEEEeeccccCcccceEEEcccc-ccCCcceeEEEEEeeecC
Q 001987 611 --------DQATSLGHAEINFLKHTSTELADMWVSLEGK-LAQSAQSKVHLRIFLENN 659 (985)
Q Consensus 611 --------~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~-~~~~~~g~l~l~~~ls~~ 659 (985)
..|||+|++.|.+..+.. ..+.||.|+.. .+.+.+|.|.|.+.....
T Consensus 371 klrqkl~resddflgqtvievrtlsg--emdvwynlekrtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEeccc--chhhhcchhhccchhhccceEEEEEEEEEc
Confidence 468999999999998654 47899999863 344556766666654433
No 173
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.47 E-value=1e-13 Score=178.74 Aligned_cols=121 Identities=17% Similarity=0.236 Sum_probs=101.0
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCC-CCEEEEEEEecCCCC
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEP-PSVLDVEVFDFDGPF 610 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~-~~~L~v~V~D~d~~~ 610 (985)
.-.|.|+|+|++|+||. +..|.+||||++.+|++ +.||++++++.||+|||+|+|.+..++ +..|+|+|||+|. |
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~-f 2053 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT-F 2053 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc-c
Confidence 45789999999999998 44799999999999955 889999999999999999998854443 3579999999998 8
Q ss_pred CCCCccceEEEEeeccccCcccceEEEccccccCCcc-eeEEEEEeee
Q 001987 611 DQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQ-SKVHLRIFLE 657 (985)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~-g~l~l~~~ls 657 (985)
++ |.+|+++|++.++..++....||+|.+++.+.++ ..|++.+-++
T Consensus 2054 ~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2054 GK-SSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred CC-CCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence 55 5999999999999999999999999975443332 3388777443
No 174
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.45 E-value=3.1e-13 Score=131.43 Aligned_cols=90 Identities=24% Similarity=0.424 Sum_probs=78.1
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEEC-------CeEEeecCccCCCCCeEeeEEEEEEec----CCCceEEEEE
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIG-------KHKSKSRILKNNSNPVWNEEFVFRVHN----IDDEELVVSV 65 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~-------~~~~kT~v~~~t~nP~wnE~f~f~v~~----~~~~~L~~~V 65 (985)
.+.|+|+|++|++|+ .+||||+|++. ..++||+++++|+||.|||+|.|.+.. .....|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 368999999999998 68999999996 246899999999999999999999853 2457899999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCC
Q 001987 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDN 97 (985)
Q Consensus 66 ~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~ 97 (985)
||++ + .+++++||++.++|.++..-++
T Consensus 95 ~d~d---~--~~~d~~iG~~~i~l~~l~~~~~ 121 (133)
T cd04009 95 KDYD---L--LGSNDFEGEAFLPLNDIPGVED 121 (133)
T ss_pred EecC---C--CCCCcEeEEEEEeHHHCCcccc
Confidence 9999 4 5789999999999999986543
No 175
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.45 E-value=3.4e-13 Score=131.32 Aligned_cols=96 Identities=22% Similarity=0.450 Sum_probs=80.8
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .+++|+++++++||.|||+|.|.++ ......|.|+|||+|
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 579999999999998 689999999963 3589999999999999999999986 335678999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
. .+++++||++.+++.... .....|+.+.
T Consensus 92 ---~--~~~~~~lG~~~i~l~~~~-----~~~~~W~~~l 120 (133)
T cd08384 92 ---I--GKSNDYIGGLQLGINAKG-----ERLRHWLDCL 120 (133)
T ss_pred ---C--CCCccEEEEEEEecCCCC-----chHHHHHHHH
Confidence 4 568999999999997522 1246788775
No 176
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.45 E-value=8e-13 Score=125.98 Aligned_cols=95 Identities=21% Similarity=0.333 Sum_probs=83.5
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECC-eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
+.|+|+|++|++|+ .+||||+|++++ ..++|++++++.||.|||+|.|.+. ...+.|.|+|||++ . .
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~~L~v~v~d~~---~--~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVT-SPNQKITLEVMDYE---K--V 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEec-CCCCEEEEEEEECC---C--C
Confidence 57999999999998 789999999976 4599999999999999999999884 44579999999999 4 5
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+++++||++.++|.++... ....||.|.
T Consensus 75 ~~d~~IG~~~~~l~~l~~~----~~~~~~~~~ 102 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKK----NEDGKYVEY 102 (120)
T ss_pred CCCCeeeEEEEeHHHhhCC----CCCceEEec
Confidence 7899999999999999865 357899887
No 177
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.44 E-value=4.5e-13 Score=125.82 Aligned_cols=88 Identities=18% Similarity=0.334 Sum_probs=75.5
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECC------EEEEeeeccCCCCCeEeEEEEEEeec----CCCCEEEEEEEecCCC
Q 001987 540 VALVEGVNLASSEMTGLSDPYVVFTCNG------KTRTSSVQLQTCDPQWHDILEFDAME----EPPSVLDVEVFDFDGP 609 (985)
Q Consensus 540 V~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~~~~tlnP~Wne~f~f~v~~----~~~~~L~v~V~D~d~~ 609 (985)
+-.++|++|+..|..|.+||||++++.+ ..++|+++++++||+|| +|.|.+.. +....|.|+|||+|.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~- 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS- 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC-
Confidence 4457999999999999999999999854 35899999999999999 78887422 236799999999998
Q ss_pred CCCCCccceEEEEeeccccC
Q 001987 610 FDQATSLGHAEINFLKHTST 629 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~ 629 (985)
+++|++||++.+++.++...
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 79999999999999998743
No 178
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.44 E-value=4.9e-13 Score=130.71 Aligned_cols=96 Identities=28% Similarity=0.478 Sum_probs=78.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
.++|.|+|++|++|+ .+||||+|++++ .+++|+++++++||.|||+|.|.++ ......|.|+|||++
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~ 93 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD 93 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence 578999999999998 689999999952 3578999999999999999999985 233468999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.+++..... ....|+.+.
T Consensus 94 ---~--~~~~~~iG~~~i~~~~~~~-----~~~~W~~~~ 122 (136)
T cd08402 94 ---R--IGKNDPIGKVVLGCNATGA-----ELRHWSDML 122 (136)
T ss_pred ---C--CCCCceeEEEEECCccCCh-----HHHHHHHHH
Confidence 4 5789999999999976422 134566554
No 179
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.43 E-value=6.9e-13 Score=129.60 Aligned_cols=96 Identities=29% Similarity=0.461 Sum_probs=80.7
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .+.+|+++++++||.|||+|.|.++ ......|.|+|||+|
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 578999999999998 689999999953 2578999999999999999999985 235678999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++++||++.+++.. ... ....|+.|.
T Consensus 94 ---~--~~~~~~iG~~~~~~~~-~~~----~~~~w~~l~ 122 (136)
T cd08404 94 ---R--VTKNEVIGRLVLGPKA-SGS----GGHHWKEVC 122 (136)
T ss_pred ---C--CCCCccEEEEEECCcC-CCc----hHHHHHHHH
Confidence 4 5789999999999988 221 256788876
No 180
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.43 E-value=7.3e-13 Score=129.13 Aligned_cols=97 Identities=28% Similarity=0.542 Sum_probs=77.2
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
.+.|.|+|++|+||+ .+||||+|++.+ .+++|+++++|+||.|||+|.|.++ ......|.|+|||+|
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d 92 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHN 92 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 478999999999998 689999999842 3479999999999999999999985 344557999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
. .+++++||++.+........ ....|+.|.
T Consensus 93 ---~--~~~~~~iG~~~l~~~~~~~~----~~~~W~~l~ 122 (135)
T cd08410 93 ---V--KSSNDFIGRIVIGQYSSGPS----ETNHWRRML 122 (135)
T ss_pred ---C--CCCCcEEEEEEEcCccCCch----HHHHHHHHH
Confidence 3 57999999998754333221 135577665
No 181
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.43 E-value=6.4e-13 Score=128.99 Aligned_cols=100 Identities=28% Similarity=0.537 Sum_probs=85.7
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEec-CCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHN-IDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~-~~~~~L~~~V~D~d~ 70 (985)
.+.|+|+|++|+||+ .+||||+|.+.+ ..++|++++++.||.|||+|.|.+.. ...+.|.|+|||++
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~- 90 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWD- 90 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECC-
Confidence 468999999999998 689999999963 56999999999999999999999753 24678999999998
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCC
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPK 111 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~ 111 (985)
. .+++++||++.++|.++... ....||+|.+..
T Consensus 91 --~--~~~~~~iG~~~~~l~~l~~~----~~~~w~~L~~~~ 123 (131)
T cd04026 91 --R--TTRNDFMGSLSFGVSELIKM----PVDGWYKLLNQE 123 (131)
T ss_pred --C--CCCcceeEEEEEeHHHhCcC----ccCceEECcCcc
Confidence 4 56899999999999999753 467899998443
No 182
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.42 E-value=8.6e-13 Score=128.95 Aligned_cols=85 Identities=29% Similarity=0.527 Sum_probs=74.2
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
.++|.|+|++|+||+ .+||||+|++.. .+.+|+++++++||.|||+|.|.++ ......|.|+|||++
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 578999999999998 689999999842 3478999999999999999999985 334678999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCccc
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSI 92 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l 92 (985)
+ .+++++||++.+++.+.
T Consensus 94 ---~--~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 94 ---R--LSRNDLIGKIYLGWKSG 111 (136)
T ss_pred ---C--CCCCcEeEEEEECCccC
Confidence 4 57899999999999876
No 183
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.42 E-value=7.1e-13 Score=123.22 Aligned_cols=83 Identities=22% Similarity=0.498 Sum_probs=69.8
Q ss_pred EEEEEEEeecCC-CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCC----CCCC
Q 001987 6 LYVYVLQGQDLL-AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDD----SGLF 75 (985)
Q Consensus 6 L~V~V~~Ar~L~-~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~----~~~~ 75 (985)
|.|+|++|+||+ .+||||++.+.+ .+++|+++++|+||+|||+|.|.++ ..+.|++.|||++.+ ..
T Consensus 1 L~V~V~~A~~L~~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~~d~-- 76 (118)
T cd08686 1 LNVIVHSAQGFKQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVKLDG-- 76 (118)
T ss_pred CEEEEEeCCCCCCCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEcccccccccc--
Confidence 689999999999 899999999963 3599999999999999999999993 588999999998310 02
Q ss_pred CCCCCeeEEEEEeCccc
Q 001987 76 GSSGELMGRVRVPVSSI 92 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l 92 (985)
.++|++||++.+.|..-
T Consensus 77 ~~~d~~~G~g~i~Ld~~ 93 (118)
T cd08686 77 EGTDAIMGKGQIQLDPQ 93 (118)
T ss_pred cCcccEEEEEEEEECHH
Confidence 46899999988876543
No 184
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.42 E-value=7.6e-13 Score=130.56 Aligned_cols=92 Identities=27% Similarity=0.569 Sum_probs=79.2
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCe-----------------------------EEeecCccCCCCCeEee
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKH-----------------------------KSKSRILKNNSNPVWNE 47 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~-----------------------------~~kT~v~~~t~nP~wnE 47 (985)
.+.|.|+|++|+||. .+||||+|.+.+. .++|+++++|+||.|||
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE 106 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNE 106 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcccc
Confidence 468999999999997 7999999999632 37899999999999999
Q ss_pred EEEEEEecCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEe
Q 001987 48 EFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (985)
Q Consensus 48 ~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (985)
+|.|.+..+....|.|+|||++ +++||++.+++.++... ....||+|
T Consensus 107 ~F~f~v~~~~~~~L~i~V~D~d---------d~~IG~v~i~l~~l~~~----~~d~W~~L 153 (153)
T cd08676 107 TFRFEVEDVSNDQLHLDIWDHD---------DDFLGCVNIPLKDLPSC----GLDSWFKL 153 (153)
T ss_pred EEEEEeccCCCCEEEEEEEecC---------CCeEEEEEEEHHHhCCC----CCCCeEeC
Confidence 9999996556789999999876 37999999999999832 25889986
No 185
>PLN03008 Phospholipase D delta
Probab=99.42 E-value=1e-12 Score=155.81 Aligned_cols=103 Identities=23% Similarity=0.440 Sum_probs=86.3
Q ss_pred CCcEEEEEECCe-EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCC
Q 001987 19 KDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDN 97 (985)
Q Consensus 19 ~DPyv~v~l~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~ 97 (985)
+||||+|.++++ ..||+++++++||+|||+|.|.+.. ....|.|+|||.| . + ++++||++.|||.++..+.
T Consensus 77 SDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah-~~s~L~f~VkD~D---~--~-gaD~IG~a~IPL~~L~~Ge- 148 (868)
T PLN03008 77 SDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAH-PFAYLEFQVKDDD---V--F-GAQIIGTAKIPVRDIASGE- 148 (868)
T ss_pred CCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecC-CCceEEEEEEcCC---c--c-CCceeEEEEEEHHHcCCCC-
Confidence 499999999876 4799999999999999999999954 3568999999999 5 3 4699999999999998763
Q ss_pred CCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001987 98 HMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (985)
Q Consensus 98 ~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (985)
....|++|.+. .+++ .+..|+|+|++.|.+-.
T Consensus 149 --~vd~Wl~Ll~~-~~kp-~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 149 --RISGWFPVLGA-SGKP-PKAETAIFIDMKFTPFD 180 (868)
T ss_pred --ceEEEEEcccc-CCCC-CCCCcEEEEEEEEEEcc
Confidence 46799999844 3343 56778999999998853
No 186
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.41 E-value=6.7e-13 Score=151.16 Aligned_cols=163 Identities=20% Similarity=0.273 Sum_probs=129.6
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCC
Q 001987 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGL 74 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~ 74 (985)
+...|+|+|.+|+||+ .+||||.|.+.++. .||.++.+++.|.|.|+|.|.+ +..-+.|.|.|||.|
T Consensus 3 ~~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~i-P~~F~~l~fYv~D~d----- 76 (800)
T KOG2059|consen 3 VEQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEI-PRTFRYLSFYVWDRD----- 76 (800)
T ss_pred cccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEec-CcceeeEEEEEeccc-----
Confidence 4568999999999999 78999999999765 9999999999999999999999 677789999999999
Q ss_pred CCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecCC--eeeEEEEeeeccCCCCCC
Q 001987 75 FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGH--NLSSNRLLYLHSNVSSNE 152 (985)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~--~l~v~v~~~~a~~L~~~d 152 (985)
+++|+.||.+.|.=.++...+ -...|+.|. +.+.. ....|+|+|.+.+.+... .+...++. ++.+-+.+
T Consensus 77 -~~~D~~IGKvai~re~l~~~~---~~d~W~~L~-~VD~d--sEVQG~v~l~l~~~e~~~~~~~~c~~L~--~r~~~P~~ 147 (800)
T KOG2059|consen 77 -LKRDDIIGKVAIKREDLHMYP---GKDTWFSLQ-PVDPD--SEVQGKVHLELALTEAIQSSGLVCHVLK--TRQGLPII 147 (800)
T ss_pred -cccccccceeeeeHHHHhhCC---CCccceecc-ccCCC--hhhceeEEEEEEeccccCCCcchhhhhh--hcccCcee
Confidence 689999999999877777653 367899999 65543 668999999999987543 33334443 55555544
Q ss_pred CCCCCCCeEEEEEcCCCCCCccccccccc
Q 001987 153 SKELEDPCVLSHDVSCSKAPCLDVTEGNH 181 (985)
Q Consensus 153 ~~g~sdP~vkv~l~~~~~~~~~k~~~~~~ 181 (985)
. +..|||+++......+-.. ++|+.++
T Consensus 148 ~-~~~dp~~~v~~~g~~~~~~-~~T~~~k 174 (800)
T KOG2059|consen 148 N-GQCDPFARVTLCGPSKLKE-KKTKVKK 174 (800)
T ss_pred C-CCCCcceEEeecccchhhc-cccceee
Confidence 4 4499999998877766544 5555544
No 187
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.41 E-value=1.2e-12 Score=125.54 Aligned_cols=85 Identities=25% Similarity=0.423 Sum_probs=75.9
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCeE--EeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKHK--SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~~--~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
.|+|+|++|++|+ .+||||+|++++.. .+|+++++++||.|||+|.|.+..+....|.|+|||+| . .
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d---~--~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYD---L--L 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECC---C--C
Confidence 3799999999998 79999999998765 67888999999999999999986566789999999999 4 5
Q ss_pred CCCCeeEEEEEeCccccc
Q 001987 77 SSGELMGRVRVPVSSIAA 94 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~ 94 (985)
+++++||++.++|.+...
T Consensus 76 ~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCceeEEEEEeeccccc
Confidence 799999999999998764
No 188
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.41 E-value=1.2e-12 Score=127.73 Aligned_cols=86 Identities=33% Similarity=0.496 Sum_probs=74.2
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL-----AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~ 70 (985)
.++|.|+|++|+||+ .+||||+|++.+ .+++|+++++++||.|||+|.|.++ +.....|.|+|||.+
T Consensus 14 ~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~- 92 (137)
T cd08409 14 LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG- 92 (137)
T ss_pred CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC-
Confidence 478999999999998 589999999864 3579999999999999999999986 455689999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCcccc
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIA 93 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~ 93 (985)
. .+++++||++.++.....
T Consensus 93 --~--~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 93 --G--VRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred --C--CCCcceEEEEEECCcccC
Confidence 4 578999999999865443
No 189
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.40 E-value=1.4e-12 Score=127.15 Aligned_cols=97 Identities=30% Similarity=0.471 Sum_probs=78.6
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEec
Q 001987 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQH 68 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~ 68 (985)
.++.|+|+|++|++|+ .+||||+|++.. .+++|+++++++||.|||+|.|.++ ......|.|+|||+
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~ 91 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDY 91 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 3679999999999998 689999999952 3579999999999999999999985 23446799999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ + .+++++||++.+++..... ....|+.+.
T Consensus 92 ~---~--~~~~~~IG~~~l~~~~~~~-----~~~~w~~~~ 121 (134)
T cd08403 92 D---R--VGHNELIGVCRVGPNADGQ-----GREHWNEML 121 (134)
T ss_pred C---C--CCCCceeEEEEECCCCCCc-----hHHHHHHHH
Confidence 9 4 6789999999998773321 245676664
No 190
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.38 E-value=5.5e-12 Score=121.81 Aligned_cols=111 Identities=29% Similarity=0.508 Sum_probs=90.5
Q ss_pred cEEEEEEEEeecCC--------CCCcEEEEEEC------CeEEeecCccCCC-CCeEeeEEEEEEecCCCceEEEEEEec
Q 001987 4 TRLYVYVLQGQDLL--------AKDSYVKVQIG------KHKSKSRILKNNS-NPVWNEEFVFRVHNIDDEELVVSVFQH 68 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~--------~~DPyv~v~l~------~~~~kT~v~~~t~-nP~wnE~f~f~v~~~~~~~L~~~V~D~ 68 (985)
++|+|+|++|+||+ .+||||++++. ..+.+|+++.++. ||.|||+|.|.+..+....|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 68999999999997 46999999994 4568999988765 999999999998655567899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
+ . . ++++||++.++|.++.. ...|++|.++.. + ....|.|.+.+++
T Consensus 82 ~---~--~-~~~~iG~~~~~l~~l~~------g~~~~~l~~~~~-~--~~~~~~l~v~~~~ 127 (128)
T cd00275 82 D---S--G-DDDFLGQACLPLDSLRQ------GYRHVPLLDSKG-E--PLELSTLFVHIDI 127 (128)
T ss_pred C---C--C-CCcEeEEEEEEhHHhcC------ceEEEEecCCCC-C--CCcceeEEEEEEE
Confidence 9 4 3 89999999999999853 347899974432 2 3457899888765
No 191
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.38 E-value=1.3e-12 Score=124.69 Aligned_cols=95 Identities=19% Similarity=0.282 Sum_probs=78.0
Q ss_pred EEEeecCC------CCCcEEEEEECCe-------EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 10 VLQGQDLL------AKDSYVKVQIGKH-------KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 10 V~~Ar~L~------~~DPyv~v~l~~~-------~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
.++|++|+ .+||||+|++.+. .++|+++++++||.|||+|.|.+.....+.|.|+|||+|..... .
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~-~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKD-L 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCC-C
Confidence 47899998 6899999999764 38999999999999999999987555667899999999920000 4
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+++++||++.+++.++..++ ....|++|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~---~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSP---GQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCC---CcEEEEEcc
Confidence 78999999999999998653 255788884
No 192
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.37 E-value=2.1e-12 Score=114.65 Aligned_cols=82 Identities=32% Similarity=0.553 Sum_probs=75.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG---KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
|+|+|++|+||+..+..+..||||++++++ ..++|++++++.+|.|||+|.|.+.......|.|+|||++. +++|+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~-~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDS-FGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETS-SSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCC-CCCCC
Confidence 789999999999989889999999999987 78999999999999999999999777777779999999998 78899
Q ss_pred ccceEE
Q 001987 615 SLGHAE 620 (985)
Q Consensus 615 ~lG~~~ 620 (985)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
No 193
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.37 E-value=2e-13 Score=146.94 Aligned_cols=97 Identities=28% Similarity=0.554 Sum_probs=86.5
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEe-cCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~-~~~~~~L~~~V~D~d~ 70 (985)
...|+|+|.+|+||. .|||||++.+-+ .+++|++++.++||+|||+|.|.+. ...++.|.|+|||||
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD- 257 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD- 257 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc-
Confidence 357999999999997 899999999953 3589999999999999999999974 567799999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ .+++||||...+.++++... +...||.|-
T Consensus 258 --r--TsRNDFMGslSFgisEl~K~----p~~GWyKlL 287 (683)
T KOG0696|consen 258 --R--TSRNDFMGSLSFGISELQKA----PVDGWYKLL 287 (683)
T ss_pred --c--cccccccceecccHHHHhhc----chhhHHHHh
Confidence 5 68999999999999999876 477899987
No 194
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.33 E-value=7.5e-12 Score=121.93 Aligned_cols=97 Identities=31% Similarity=0.469 Sum_probs=82.3
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEECCe-----EEeecCccCCCCCeEeeEEEEEEecC--CCceEEEEEEec
Q 001987 2 VSTRLYVYVLQGQDLL------AKDSYVKVQIGKH-----KSKSRILKNNSNPVWNEEFVFRVHNI--DDEELVVSVFQH 68 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~-----~~kT~v~~~t~nP~wnE~f~f~v~~~--~~~~L~~~V~D~ 68 (985)
..++|.|+|++|+||+ .+||||++++.+. +++|++++++.||.|||+|.|.+... ....|.|+|||.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~ 91 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK 91 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence 3579999999999998 6899999999752 57999999999999999999998532 368899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ + .+++++||++.++|.+ . + .....|++|.
T Consensus 92 ~---~--~~~~~~lG~~~i~l~~-~-~---~~~~~W~~l~ 121 (134)
T cd00276 92 D---S--VGRNEVIGQVVLGPDS-G-G---EELEHWNEML 121 (134)
T ss_pred C---C--CCCCceeEEEEECCCC-C-C---cHHHHHHHHH
Confidence 9 4 4689999999999999 2 2 2357899887
No 195
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.28 E-value=2.5e-11 Score=116.40 Aligned_cols=87 Identities=20% Similarity=0.459 Sum_probs=75.1
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEE-Ee--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~~L~~~V~D~ 68 (985)
.+.|.|+|++|++|+ .+||||++++.+ ..++|+++++++||.|||+|.|. +. +.....|.|+|||+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 468999999999998 689999999852 36899999999999999999996 42 23457899999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCcccccc
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~ 95 (985)
+ + . ++++||++.++|+++...
T Consensus 94 ~---~--~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 94 D---R--F-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred C---C--c-CCeeEEEEEEEcccCCCC
Confidence 9 4 4 789999999999999865
No 196
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.25 E-value=1.4e-11 Score=159.45 Aligned_cols=114 Identities=18% Similarity=0.428 Sum_probs=96.0
Q ss_pred CcEEEEEEEEeecCC----CCCcEEEEEECCe-EEeecCccCCCCCeEeeEEEEEEec-CCCceEEEEEEecCCCCCCCC
Q 001987 3 STRLYVYVLQGQDLL----AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHN-IDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~----~~DPyv~v~l~~~-~~kT~v~~~t~nP~wnE~f~f~v~~-~~~~~L~~~V~D~d~~~~~~~ 76 (985)
.|.|+|+|++|+||. .+||||++.++++ +.||++++++.||+|||+|.|.+.+ +....|.|+|||+| .|
T Consensus 1979 ~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d---~f-- 2053 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN---TF-- 2053 (2102)
T ss_pred CcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC---cc--
Confidence 578999999999999 7899999999966 7899999999999999999988864 44577999999999 53
Q ss_pred CCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccE---EEEEEEEEe
Q 001987 77 SSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGK---ILLTISLNG 131 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~---I~lsl~~~~ 131 (985)
.++.||++.|+|.++..++ ....||+|. ++ ++..|+ |.+.+.|.+
T Consensus 2054 -~kd~~G~~~i~l~~vv~~~---~~~~~~~L~-~~-----~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 -GKSSLGKVTIQIDRVVMEG---TYSGEYSLN-PE-----SNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred -CCCCCceEEEEHHHHhcCc---eeeeeeecC-cc-----cccCCCcceEEEEEEecC
Confidence 4559999999999999763 467899998 32 234577 999998853
No 197
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=8.5e-12 Score=139.31 Aligned_cols=121 Identities=33% Similarity=0.604 Sum_probs=101.9
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCC----
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDS---- 72 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~---- 72 (985)
+.++.++|+.|++|. ++||||.+++++.+.||+++...+||+|||.|.|+. ......+++.|||.|.|-
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfec-hnstdrikvrvwded~dlkskl 372 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFEC-HNSTDRIKVRVWDEDNDLKSKL 372 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeee-cCCCceeEEEEecCcccHHHHH
Confidence 567899999999998 899999999999999999999999999999999998 577889999999999553
Q ss_pred --CCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 73 --GLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 73 --~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
++....|||+|+..|.+..+..+ -..||+|+ +++.+ ....|-|+|.+...-.
T Consensus 373 rqkl~resddflgqtvievrtlsge-----mdvwynle-krtdk--savsgairlhisveik 426 (1283)
T KOG1011|consen 373 RQKLTRESDDFLGQTVIEVRTLSGE-----MDVWYNLE-KRTDK--SAVSGAIRLHISVEIK 426 (1283)
T ss_pred HHHhhhcccccccceeEEEEecccc-----hhhhcchh-hccch--hhccceEEEEEEEEEc
Confidence 11124789999999999988754 56899999 66655 5678988887776543
No 198
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.25 E-value=1.3e-11 Score=140.95 Aligned_cols=120 Identities=23% Similarity=0.291 Sum_probs=106.5
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCc
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATS 615 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~ 615 (985)
.|.|+|.+|+||++.+..|.+||||.|.++. ...+|.++.++|.|.|.|+|.|. .+..-..|.|-|||.| +++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~-iP~~F~~l~fYv~D~d--~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFE-IPRTFRYLSFYVWDRD--LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEe-cCcceeeEEEEEeccc--cccccc
Confidence 5899999999999999999999999999985 57899999999999999999999 5665678999999999 599999
Q ss_pred cceEEEEeeccccCcccceEEEcccc-ccCCcceeEEEEEeeecC
Q 001987 616 LGHAEINFLKHTSTELADMWVSLEGK-LAQSAQSKVHLRIFLENN 659 (985)
Q Consensus 616 lG~~~i~l~~l~~~~~~~~w~~L~~~-~~~~~~g~l~l~~~ls~~ 659 (985)
||.+-|.=.++......+.|+.|..- .....+|++||++-+...
T Consensus 83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~ 127 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEA 127 (800)
T ss_pred cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccc
Confidence 99999999998887789999999873 445679999999965443
No 199
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.22 E-value=6.3e-11 Score=107.77 Aligned_cols=100 Identities=32% Similarity=0.604 Sum_probs=88.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCcc
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSL 616 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~l 616 (985)
|.|+|++|++|......+..||||.+.+.+ ...+|+++.++.||.||+.|.|.+.......|.|+|||++. .+.+.+|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~-~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDR-FSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCC-CCCCcee
Confidence 478999999999877778999999999998 88999999999999999999999654467799999999998 5778999
Q ss_pred ceEEEEeeccc-cCcccceEEEc
Q 001987 617 GHAEINFLKHT-STELADMWVSL 638 (985)
Q Consensus 617 G~~~i~l~~l~-~~~~~~~w~~L 638 (985)
|++.+++..+. .......|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999988 66777888875
No 200
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.22 E-value=4.2e-11 Score=112.45 Aligned_cols=83 Identities=17% Similarity=0.421 Sum_probs=69.1
Q ss_pred EEEEEEeecCC------CCCcEEEEEECCe------EEeecCccCCCCCeEeeEEEEEEec----CCCceEEEEEEecCC
Q 001987 7 YVYVLQGQDLL------AKDSYVKVQIGKH------KSKSRILKNNSNPVWNEEFVFRVHN----IDDEELVVSVFQHND 70 (985)
Q Consensus 7 ~V~V~~Ar~L~------~~DPyv~v~l~~~------~~kT~v~~~t~nP~wnE~f~f~v~~----~~~~~L~~~V~D~d~ 70 (985)
.+-.++|++|+ .+||||+|++.++ .++|+++++++||.|| +|.|.+.. .....|.|+|||++
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d- 80 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD- 80 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC-
Confidence 34567899998 7999999998653 4899999999999999 67777532 22689999999999
Q ss_pred CCCCCCCCCCeeEEEEEeCcccccc
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~ 95 (985)
+ .++|++||++.+++.++...
T Consensus 81 --~--~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 81 --S--SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred --C--CCCCcEEEEEEEEHHHHhcC
Confidence 4 57999999999999999854
No 201
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.19 E-value=8.5e-11 Score=104.21 Aligned_cols=76 Identities=37% Similarity=0.630 Sum_probs=68.1
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECC---eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCC
Q 001987 6 LYVYVLQGQDLL------AKDSYVKVQIGK---HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFG 76 (985)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~---~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~ 76 (985)
|+|+|++|+||+ ..||||++.+.+ ...+|++++++.+|.|+|+|.|.+.......|.|+|||.+ . .
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~---~--~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKD---S--F 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEET---S--S
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECC---C--C
Confidence 789999999999 679999999987 6699999999999999999999987666677999999999 3 4
Q ss_pred CCCCeeEEEE
Q 001987 77 SSGELMGRVR 86 (985)
Q Consensus 77 ~~d~~lG~~~ 86 (985)
+++++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 6799999974
No 202
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.17 E-value=1.3e-10 Score=111.20 Aligned_cols=92 Identities=23% Similarity=0.290 Sum_probs=78.0
Q ss_pred EEEEEEEeecCCCCC--CCCC--CCcEEEEEECC---EEEEeeeccCCCC--CeEeEEEEEEeecC--------------
Q 001987 538 LTVALVEGVNLASSE--MTGL--SDPYVVFTCNG---KTRTSSVQLQTCD--PQWHDILEFDAMEE-------------- 594 (985)
Q Consensus 538 L~V~v~~a~~L~~~d--~~g~--~DPyv~v~~~~---~~~kT~~~~~tln--P~Wne~f~f~v~~~-------------- 594 (985)
|+|.|.+|+|++..+ ..|. +||||+..+.+ .+.+|.+..+++| |.||+.|.|.+.-.
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966544 3664 99999999964 5689999999999 99999999986331
Q ss_pred ---------CCCEEEEEEEecCCCCCCCCccceEEEEeeccccCc
Q 001987 595 ---------PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTE 630 (985)
Q Consensus 595 ---------~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~ 630 (985)
....|.++|||.|. +++||+||+++++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~-~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDK-FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcc-cCCCCcceEEEEEhhhccccc
Confidence 14589999999999 899999999999999877654
No 203
>PLN02223 phosphoinositide phospholipase C
Probab=99.17 E-value=2.1e-10 Score=131.61 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=94.4
Q ss_pred CeEEEEEEEEeecCCC-----CCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEE
Q 001987 535 GWVLTVALVEGVNLAS-----SEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF 604 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~-----~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~ 604 (985)
...|+|+|+.|++++. .+.....||||+|.+.| ...+|++..++.||+|||+|+|.+..+.-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 3579999999998752 12235689999999964 3567888889999999999999987777789999999
Q ss_pred ecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCC-cceeEEEEEee
Q 001987 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFL 656 (985)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~l 656 (985)
|+|. .+.|+|+|++.+|+..+..|. .+++|.++.+.. ..-+|.+++.+
T Consensus 488 D~D~-~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYEV-STADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred ecCC-CCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 9998 688999999999999998876 567887755444 34466666643
No 204
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.15 E-value=2e-10 Score=104.81 Aligned_cols=94 Identities=28% Similarity=0.491 Sum_probs=81.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCE---EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCC
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGK---TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQAT 614 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~---~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd 614 (985)
|.|.|++|++|...+..+..+|||++++.+. ..+|+++.++.||.|||+|.|.+.......|.|+|||.+. .+.+.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~-~~~~~ 80 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDR-FGRDD 80 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCC-ccCCc
Confidence 6899999999998876678999999999864 8999999999999999999999644448899999999997 56789
Q ss_pred ccceEEEEeeccccCccc
Q 001987 615 SLGHAEINFLKHTSTELA 632 (985)
Q Consensus 615 ~lG~~~i~l~~l~~~~~~ 632 (985)
++|.+.+++.++..+...
T Consensus 81 ~~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 81 FIGQVTIPLSDLLLGGRH 98 (101)
T ss_pred eeEEEEEEHHHcccCccc
Confidence 999999999988766543
No 205
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=3.6e-11 Score=126.69 Aligned_cols=171 Identities=18% Similarity=0.249 Sum_probs=137.1
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEE-Ee--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~~L~~~V~D~ 68 (985)
+..+.+++..|++|. ..|||+++.++. .+.+|++..+++||.|+|+.... +. +.....+++.|.|.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence 467899999999987 789999999984 34788999999999999998877 32 45567888999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeec--CCCCCCCCccccEEEEEEEEEecCCeeeEEEEeeecc
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLET--PKTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHS 146 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~--~~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~a~ 146 (985)
+ + +...+++|+..+++..+...+... ...|+.-.- .+........+|+|.+++.|......+.+.++. ..
T Consensus 172 ~---~--~~~~~sqGq~r~~lkKl~p~q~k~-f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iR--c~ 243 (362)
T KOG1013|consen 172 D---K--KTHNESQGQSRVSLKKLKPLQRKS-FNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIR--CS 243 (362)
T ss_pred c---c--cccccCcccchhhhhccChhhcch-hhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEEE--ee
Confidence 8 5 568899999999999998775422 223433221 222222346899999999998888888888886 57
Q ss_pred CCCCCCCCCCCCCeEEEEEcCCCCCCccccccccc
Q 001987 147 NVSSNESKELEDPCVLSHDVSCSKAPCLDVTEGNH 181 (985)
Q Consensus 147 ~L~~~d~~g~sdP~vkv~l~~~~~~~~~k~~~~~~ 181 (985)
+|..+|.+|.+||||+.++.+...+..+++|+..+
T Consensus 244 ~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K 278 (362)
T KOG1013|consen 244 HLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKK 278 (362)
T ss_pred eeeccccCCCCCccceeecCCCcchhhcccCcchh
Confidence 89999999999999999999999998888887775
No 206
>PLN02952 phosphoinositide phospholipase C
Probab=99.09 E-value=7.5e-10 Score=129.98 Aligned_cols=118 Identities=15% Similarity=0.197 Sum_probs=93.4
Q ss_pred CeEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEE
Q 001987 535 GWVLTVALVEGVNLASS------EMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEV 603 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V 603 (985)
...|+|+|+.|.+|+.. +.....||||+|.+.| .+.+|+++.++.||+|||+|.|.+..+.-..|+|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 35799999999997532 1123359999999954 567999999999999999999998776677899999
Q ss_pred EecCCCCCCCCccceEEEEeeccccCcccceEEEccccccC-CcceeEEEEEee
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQ-SAQSKVHLRIFL 656 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~g~l~l~~~l 656 (985)
+|+|. .+.+|++|++.|||..+..+. .|++|.+..+. ...-.|.+++.+
T Consensus 549 ~D~D~-~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 549 REYDM-SEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred EecCC-CCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 99998 688999999999999998876 49999764433 334456665543
No 207
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.02 E-value=4.4e-11 Score=135.81 Aligned_cols=129 Identities=22% Similarity=0.484 Sum_probs=104.4
Q ss_pred CCCeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--------------------------CE-----EEEeeeccCCCCC
Q 001987 533 GDGWVLTVALVEGVNLASSEMTGLSDPYVVFTCN--------------------------GK-----TRTSSVQLQTCDP 581 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~--------------------------~~-----~~kT~~~~~tlnP 581 (985)
.....+.|.+.+|+||.++|.+|.||||+...+- |. ..-|+++++||||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 3445678899999999999999999999988661 00 2357889999999
Q ss_pred eEeEEEEEEeecCCCCEEEEEEEecCCC---------------C-----------------CC---CCccceEEEEeecc
Q 001987 582 QWHDILEFDAMEEPPSVLDVEVFDFDGP---------------F-----------------DQ---ATSLGHAEINFLKH 626 (985)
Q Consensus 582 ~Wne~f~f~v~~~~~~~L~v~V~D~d~~---------------~-----------------~~---dd~lG~~~i~l~~l 626 (985)
+|+|.|.|.+-+-....+++-+||+|-- + +. |||+|.+.|||.++
T Consensus 191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 9999999997666677999999999831 1 22 89999999999998
Q ss_pred ccCcccceEEEcccc-ccCCcceeEEEEEeeecCCCc
Q 001987 627 TSTELADMWVSLEGK-LAQSAQSKVHLRIFLENNNGV 662 (985)
Q Consensus 627 ~~~~~~~~w~~L~~~-~~~~~~g~l~l~~~ls~~~~~ 662 (985)
... ..+.||.|++. .+...+|.++|.+|++...+.
T Consensus 271 P~~-Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~~ 306 (1103)
T KOG1328|consen 271 PPD-GLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEG 306 (1103)
T ss_pred Ccc-hHHHHhccCcccccccccceEEEEEEEeeeccc
Confidence 765 47889999985 444578999999998776543
No 208
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.01 E-value=1.6e-09 Score=103.85 Aligned_cols=86 Identities=23% Similarity=0.332 Sum_probs=74.5
Q ss_pred EEEEEEEEeecCC----------CCCcEEEEEECC---eEEeecCccCCCC--CeEeeEEEEEEec--------------
Q 001987 5 RLYVYVLQGQDLL----------AKDSYVKVQIGK---HKSKSRILKNNSN--PVWNEEFVFRVHN-------------- 55 (985)
Q Consensus 5 ~L~V~V~~Ar~L~----------~~DPyv~v~l~~---~~~kT~v~~~t~n--P~wnE~f~f~v~~-------------- 55 (985)
.|+|.|.+|+|++ .+||||++.+.+ .+++|.|+.+++| |.||+.|.|+++.
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 4899999999965 399999999975 4599999999999 9999999998652
Q ss_pred ---------CCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCcccccc
Q 001987 56 ---------IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 56 ---------~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~ 95 (985)
.....|.|+|||.| + .++|++||++.++|..+...
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D---~--~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDND---K--FSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred ccccCcceEecCcEEEEEEEECc---c--cCCCCcceEEEEEhhhcccc
Confidence 23578999999999 5 57999999999999988765
No 209
>PLN02223 phosphoinositide phospholipase C
Probab=99.00 E-value=3.1e-09 Score=122.20 Aligned_cols=113 Identities=21% Similarity=0.321 Sum_probs=89.9
Q ss_pred CcEEEEEEEEeecCC-----------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEE
Q 001987 3 STRLYVYVLQGQDLL-----------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVF 66 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~ 66 (985)
...|.|+|+.|++++ ..||||+|.+.+ .+++|++..|+.||.|||+|.|.+..+.-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 357999999999873 368999999964 3478888888999999999999988888889999999
Q ss_pred ecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 67 QHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 67 D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
|+| . .++++|+|+..+|+..+..+ .++++|.+. .+. .-..-.|++.+.|
T Consensus 488 D~D---~--~~~ddfiGQ~~LPv~~Lr~G------yR~VpL~~~-~g~--~l~~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYE---V--STADAFCGQTCLPVSELIEG------IRAVPLYDE-RGK--ACSSTMLLTRFKW 536 (537)
T ss_pred ecC---C--CCCCcEEEEEecchHHhcCC------ceeEeccCC-CcC--CCCCceEEEEEEe
Confidence 999 3 56899999999999999864 456888733 322 2234567776665
No 210
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.98 E-value=2.7e-09 Score=96.85 Aligned_cols=94 Identities=35% Similarity=0.656 Sum_probs=80.4
Q ss_pred EEEEEEEeecCC------CCCcEEEEEECC-eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 6 LYVYVLQGQDLL------AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 6 L~V~V~~Ar~L~------~~DPyv~v~l~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
|.|+|++|++|. .+||||.+.+.+ ..++|+++.++.||.|||.|.|.+.......|.|+|||.+ . .+.
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~---~--~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKD---R--FSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecC---C--CCC
Confidence 579999999997 689999999998 7899999999999999999999985446889999999999 3 356
Q ss_pred CCeeEEEEEeCcccc-ccCCCCCCCeEEEe
Q 001987 79 GELMGRVRVPVSSIA-AEDNHMLPPTWFSL 107 (985)
Q Consensus 79 d~~lG~~~i~L~~l~-~~~~~~~~~~W~~L 107 (985)
+.+||++.+++.++. .. .....|++|
T Consensus 76 ~~~ig~~~~~l~~l~~~~---~~~~~~~~l 102 (102)
T cd00030 76 DDFLGEVEIPLSELLDSG---KEGELWLPL 102 (102)
T ss_pred CceeEEEEEeHHHhhhcC---CcCcceecC
Confidence 899999999999987 32 235678765
No 211
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.98 E-value=2.5e-09 Score=125.42 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=93.6
Q ss_pred CeEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEE
Q 001987 535 GWVLTVALVEGVNLASS------EMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEV 603 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~------d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V 603 (985)
...|.|+|+.|.+++.. +.....||||+|.+.| .+.+|++..++.||+|||+|+|.+..+.-..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 35799999999987521 2233579999999953 356888999999999999999998777778999999
Q ss_pred EecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCC-cceeEEEEEee
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFL 656 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~l 656 (985)
+|+|. .++|||+|++.||+..|..|.. .++|.++.+.. ..-.|.+++.+
T Consensus 548 ~d~d~-~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDI-NEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EECCC-CCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCCCCeeEEEEEe
Confidence 99998 5899999999999999988764 56887754443 33456666643
No 212
>PLN02270 phospholipase D alpha
Probab=98.98 E-value=3.2e-09 Score=126.77 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=99.9
Q ss_pred CeEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECC-EEEEeeeccC-CCCCeEeEEEEEEeecC
Q 001987 535 GWVLTVALVEGVNLASSE------------------MTGLSDPYVVFTCNG-KTRTSSVQLQ-TCDPQWHDILEFDAMEE 594 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d------------------~~g~~DPyv~v~~~~-~~~kT~~~~~-tlnP~Wne~f~f~v~~~ 594 (985)
-|.|.|+|.+|++|+..+ ..+.+||||.|.+++ +..+|+++.+ ..||+|||.|.+. +..
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~-~ah 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIY-CAH 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEe-ecc
Confidence 468999999999998631 135789999999986 5569999988 4699999999999 466
Q ss_pred CCCEEEEEEEecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCCc--ceeEEEEEeeec
Q 001987 595 PPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSA--QSKVHLRIFLEN 658 (985)
Q Consensus 595 ~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~--~g~l~l~~~ls~ 658 (985)
....+.|+|.|.|. ++. .+||++.||+.++..+...+.|+++.+..+.+. +.+||+++.|..
T Consensus 86 ~~~~v~f~vkd~~~-~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~ 149 (808)
T PLN02270 86 MASNIIFTVKDDNP-IGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFE 149 (808)
T ss_pred CcceEEEEEecCCc-cCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEE
Confidence 67899999999997 554 599999999999999999999999988655544 348888886544
No 213
>PLN02952 phosphoinositide phospholipase C
Probab=98.91 E-value=1.1e-08 Score=120.33 Aligned_cols=95 Identities=27% Similarity=0.373 Sum_probs=81.9
Q ss_pred CcEEEEEEEEeecCC------------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEE
Q 001987 3 STRLYVYVLQGQDLL------------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSV 65 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V 65 (985)
...|.|+|+.|.+|+ ..||||+|.+-+ .+.+|+++.++.||.|||+|.|.+..+.-..|+|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 468999999998874 248999999953 468999999999999999999998777778899999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 66 ~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+|+| . .+.++|+|+..+||..+..+ .+|++|.
T Consensus 549 ~D~D---~--~~~ddfiGq~~lPv~~Lr~G------yR~VpL~ 580 (599)
T PLN02952 549 REYD---M--SEKDDFGGQTCLPVSELRPG------IRSVPLH 580 (599)
T ss_pred EecC---C--CCCCCeEEEEEcchhHhcCC------ceeEeCc
Confidence 9999 3 56899999999999999864 4689997
No 214
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.90 E-value=9.5e-09 Score=120.42 Aligned_cols=116 Identities=15% Similarity=0.202 Sum_probs=91.2
Q ss_pred eEEEEEEEEeecCC----C--CCCCCCCCcEEEEEECC-----EEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEE
Q 001987 536 WVLTVALVEGVNLA----S--SEMTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVF 604 (985)
Q Consensus 536 g~L~V~v~~a~~L~----~--~d~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~ 604 (985)
..|+|+|+.|.+++ . .+.....||||+|.+.| .+.+|+++.++.||+|||+|+|.+..+.-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 57999999998853 1 11234579999999953 4679999999999999999999987777789999999
Q ss_pred ecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCC-cceeEEEEEe
Q 001987 605 DFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIF 655 (985)
Q Consensus 605 D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~ 655 (985)
|+|. .+.|+|+|++.||+..+..|.. .++|.+..+.. ....|.+++.
T Consensus 532 d~D~-~~~ddfigq~~lPv~~Lr~GyR---~V~L~~~~g~~l~~a~Lfv~~~ 579 (581)
T PLN02222 532 EYDM-SEKDDFGGQTCLPVWELSQGIR---AFPLHSRKGEKYKSVKLLVKVE 579 (581)
T ss_pred ECCC-CCCCcEEEEEEcchhhhhCccc---eEEccCCCcCCCCCeeEEEEEE
Confidence 9998 6889999999999999988764 56887654443 2335555553
No 215
>PLN02228 Phosphoinositide phospholipase C
Probab=98.90 E-value=1.1e-08 Score=119.73 Aligned_cols=120 Identities=17% Similarity=0.186 Sum_probs=95.7
Q ss_pred eEEEEEEEEeecCCC---CC---CCCCCCcEEEEEECC-----EEEEeeeccCCCCCeE-eEEEEEEeecCCCCEEEEEE
Q 001987 536 WVLTVALVEGVNLAS---SE---MTGLSDPYVVFTCNG-----KTRTSSVQLQTCDPQW-HDILEFDAMEEPPSVLDVEV 603 (985)
Q Consensus 536 g~L~V~v~~a~~L~~---~d---~~g~~DPyv~v~~~~-----~~~kT~~~~~tlnP~W-ne~f~f~v~~~~~~~L~v~V 603 (985)
..|+|+|+.|++|+. .+ .....||||+|.+.| .+++|+++.++.||+| ||+|+|.+..+.-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999999742 11 123479999999843 4679999999999999 99999998777778999999
Q ss_pred EecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCC-cceeEEEEEeeecC
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFLENN 659 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~ls~~ 659 (985)
+|+|. .+.|+++|++.|||..|..|.. .++|.+..+.. ....|.+++.+..+
T Consensus 511 ~D~d~-~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 511 QDYDN-DTQNDFAGQTCLPLPELKSGVR---AVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EeCCC-CCCCCEEEEEEcchhHhhCCee---EEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 99998 6889999999999999988763 56887654443 45568888876554
No 216
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.89 E-value=8.2e-09 Score=94.06 Aligned_cols=86 Identities=33% Similarity=0.606 Sum_probs=75.3
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEECCe---EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIGKH---KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~~~---~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~ 75 (985)
.|.|+|++|++|. ..+|||++.+... ..+|+++.++.||.|||+|.|.+.......|.|+|||.+ .
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~---~-- 75 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKD---R-- 75 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecC---C--
Confidence 3789999999998 4799999999875 799999999999999999999985444899999999998 3
Q ss_pred CCCCCeeEEEEEeCcccccc
Q 001987 76 GSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~ 95 (985)
.+.+.++|.+.+++.++..+
T Consensus 76 ~~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 76 FGRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred ccCCceeEEEEEEHHHcccC
Confidence 35689999999999988765
No 217
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.89 E-value=2.9e-09 Score=118.19 Aligned_cols=135 Identities=16% Similarity=0.311 Sum_probs=110.1
Q ss_pred eEEEEEEEEeecCCCCCC-CCCCCcEEEEEECCEEEEeeeccCCCCCeEe-EEEEEEeec--CCCCEEEEEEEecCCCCC
Q 001987 536 WVLTVALVEGVNLASSEM-TGLSDPYVVFTCNGKTRTSSVQLQTCDPQWH-DILEFDAME--EPPSVLDVEVFDFDGPFD 611 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~-~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wn-e~f~f~v~~--~~~~~L~v~V~D~d~~~~ 611 (985)
|.|.|+|..|++||.+|. ....|.||.+++++..+||.+..++|||.|| +.|.|.|.+ .....|.|+++|+|. ++
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-ys 81 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-YS 81 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc-cc
Confidence 678999999999999996 4568999999999999999999999999999 899999743 335589999999999 89
Q ss_pred CCCccceEEEEeecccc----------CcccceEEEccccccCCcceeEEEEEeeecCCCcchhhhhhhhh
Q 001987 612 QATSLGHAEINFLKHTS----------TELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIKEYLTKM 672 (985)
Q Consensus 612 ~dd~lG~~~i~l~~l~~----------~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~~~~l~~~l~~l 672 (985)
.+|-||.+.|++..+.. +.....|+|+.+. -....|+|.+-+......+.+.+.+.+|..
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt-ihgirgeinvivkvdlfndlnkf~qsscgv 151 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT-IHGIRGEINVIVKVDLFNDLNKFPQSSCGV 151 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee-cccccceeEEEEEEeehhhhhhcccccccc
Confidence 99999999999987543 2344679999752 123578898888887777777666655543
No 218
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.89 E-value=5.2e-09 Score=122.24 Aligned_cols=117 Identities=18% Similarity=0.319 Sum_probs=92.5
Q ss_pred EEEEEEEEeecCCCCC-C---CCCCCcEEEEEECC-----EEEEee-eccCCCCCeEeEEEEEEeecCCCCEEEEEEEec
Q 001987 537 VLTVALVEGVNLASSE-M---TGLSDPYVVFTCNG-----KTRTSS-VQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDF 606 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d-~---~g~~DPyv~v~~~~-----~~~kT~-~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~ 606 (985)
.|+|+|+.|++++..- . ...+||||.|.+.| ...+|+ +..++.||.|+|+|+|.+..+.-..|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999765533 2 34689999999965 357899 577899999999999998888888999999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEccccccCC-cceeEEEEEeee
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQS-AQSKVHLRIFLE 657 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~-~~g~l~l~~~ls 657 (985)
|. .++|||+|+..||+.++..|..+ ++|.+..|.. ..-.|.+++.+.
T Consensus 697 d~-~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DY-IGKDDFIGQTTLPVSELRQGYRH---VPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred CC-CCcccccceeeccHHHhhCceee---eeecCCCCccccceeEEEEEEEe
Confidence 98 68999999999999999888754 4676543332 234566666543
No 219
>PLN02270 phospholipase D alpha
Probab=98.86 E-value=1.6e-08 Score=120.93 Aligned_cols=120 Identities=18% Similarity=0.320 Sum_probs=98.5
Q ss_pred CCcEEEEEEEEeecCC------------------------CCCcEEEEEECCeE-EeecCccCC-CCCeEeeEEEEEEec
Q 001987 2 VSTRLYVYVLQGQDLL------------------------AKDSYVKVQIGKHK-SKSRILKNN-SNPVWNEEFVFRVHN 55 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------------------------~~DPyv~v~l~~~~-~kT~v~~~t-~nP~wnE~f~f~v~~ 55 (985)
.++.|.|+|++|++|+ ++||||.|.+.+.+ .||+++.+. .||.|+|+|.+.+ .
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~-a 84 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYC-A 84 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEee-c
Confidence 5789999999999885 35999999998755 899999984 6999999999998 5
Q ss_pred CCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001987 56 IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (985)
Q Consensus 56 ~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (985)
.....|.|.|.|.| - + ...+||.+.+|+.++..++ ....|++|... .+++ .+...+|++++.|.+-.
T Consensus 85 h~~~~v~f~vkd~~---~--~-g~~~ig~~~~p~~~~~~g~---~i~~~~~~~~~-~~~p-~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 85 HMASNIIFTVKDDN---P--I-GATLIGRAYIPVEEILDGE---EVDRWVEILDN-DKNP-IHGGSKIHVKLQYFEVT 151 (808)
T ss_pred cCcceEEEEEecCC---c--c-CceEEEEEEEEHHHhcCCC---ccccEEeccCC-CCCc-CCCCCEEEEEEEEEEcc
Confidence 66689999999998 2 2 5669999999999998763 47899999833 4443 33445999999998743
No 220
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.82 E-value=1.1e-09 Score=124.72 Aligned_cols=92 Identities=25% Similarity=0.398 Sum_probs=81.6
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCE-------EEEeeeccCCCCCeEeEEEEEEeecCC----CCEEEEEE
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGK-------TRTSSVQLQTCDPQWHDILEFDAMEEP----PSVLDVEV 603 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~-------~~kT~~~~~tlnP~Wne~f~f~v~~~~----~~~L~v~V 603 (985)
.-.|.|.|+.|+++.+.|.||.|||||+|.++.+ ..+|+|+.+||||+|+|.|+|.|...+ ...|.|+|
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEe
Confidence 4478889999999999999999999999999743 469999999999999999999975433 44899999
Q ss_pred EecCCCCCCCCccceEEEEeeccc
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHT 627 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~ 627 (985)
+|+|- ++.+||-|++.+.|.++.
T Consensus 1026 MDHD~-L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1026 MDHDY-LRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred eccce-ecccccchHHHHhhCCCC
Confidence 99998 899999999999999864
No 221
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.80 E-value=1.5e-08 Score=90.93 Aligned_cols=84 Identities=17% Similarity=0.311 Sum_probs=72.4
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCC
Q 001987 538 LTVALVEGVNLASSE---MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQA 613 (985)
Q Consensus 538 L~V~v~~a~~L~~~d---~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~d 613 (985)
|.|+|..|+|+.-.+ ..+.+||||.|++++. +.+|++ +.||.|||+|.|++ +....+.+.|||... +..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V--dk~nEiel~VyDk~~--~~~ 73 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV--EKNNEEEVIVYDKGG--DQP 73 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe--cCCcEEEEEEEeCCC--Cee
Confidence 579999999999888 5788999999999976 788887 58999999999996 457899999999875 566
Q ss_pred CccceEEEEeecccc
Q 001987 614 TSLGHAEINFLKHTS 628 (985)
Q Consensus 614 d~lG~~~i~l~~l~~ 628 (985)
-.||-.-|.++++..
T Consensus 74 ~Pi~llW~~~sdi~E 88 (109)
T cd08689 74 VPVGLLWLRLSDIAE 88 (109)
T ss_pred cceeeehhhHHHHHH
Confidence 789999999888644
No 222
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.79 E-value=3.9e-08 Score=115.48 Aligned_cols=113 Identities=26% Similarity=0.389 Sum_probs=89.4
Q ss_pred CcEEEEEEEEeecCC------------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEE
Q 001987 3 STRLYVYVLQGQDLL------------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSV 65 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V 65 (985)
..+|.|+|+.+.+++ ..||||+|.+-+ .+.+|++..++.||.|||+|.|.+..+.-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 368999999999864 259999999953 347899999999999999999998778889999999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 66 ~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
+|+| ..++++|+|+..+|+..|..+ .+..+|.+..+ . .-..-.|++.+.+
T Consensus 548 ~d~d-----~~~~ddfiGQ~~lPv~~Lr~G------yR~V~L~~~~G-~--~l~~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHD-----INEKDDFGGQTCLPVSEIRQG------IHAVPLFNRKG-V--KYSSTRLLMRFEF 597 (598)
T ss_pred EECC-----CCCCCCEEEEEEcchHHhhCc------cceEeccCCCc-C--CCCCCeeEEEEEe
Confidence 9999 357899999999999999864 34578873332 2 1123467766655
No 223
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.76 E-value=2.8e-08 Score=120.39 Aligned_cols=96 Identities=19% Similarity=0.406 Sum_probs=84.7
Q ss_pred CCCeEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCC
Q 001987 533 GDGWVLTVALVEGVNLASSE--MTGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d--~~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~ 609 (985)
..-|+|.|+|.+|++|...| .++..|||+.+...+. ..||+++++++||+|||+|.+. .......|.++|||++.
T Consensus 433 ~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~-lns~~d~L~LslyD~n~- 510 (1227)
T COG5038 433 TAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYIL-LNSFTDPLNLSLYDFNS- 510 (1227)
T ss_pred CeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEE-ecccCCceeEEEEeccc-
Confidence 35689999999999999999 5899999999998654 4599999999999999999998 56777899999999888
Q ss_pred CCCCCccceEEEEeeccccCc
Q 001987 610 FDQATSLGHAEINFLKHTSTE 630 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~ 630 (985)
+.+|+.+|++.++|..+....
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~~ 531 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQNP 531 (1227)
T ss_pred cCCcceeeeEEechHHhhhcc
Confidence 799999999999999876543
No 224
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.76 E-value=6.4e-08 Score=113.59 Aligned_cols=113 Identities=23% Similarity=0.357 Sum_probs=88.7
Q ss_pred CcEEEEEEEEeecCC------------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEE
Q 001987 3 STRLYVYVLQGQDLL------------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSV 65 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V 65 (985)
...|.|+|+.|.+++ ..||||+|.+.+ .+.+|+++.++.||.|||+|.|.+..+.-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 357999999998742 368999999952 458999999999999999999998778889999999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 66 ~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
+|+| . .+.++|+|+..+|+..|..+ .+..+|.+..+ . .-..-.|.+.+.+
T Consensus 531 ~d~D---~--~~~ddfigq~~lPv~~Lr~G------yR~V~L~~~~g-~--~l~~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYD---M--SEKDDFGGQTCLPVWELSQG------IRAFPLHSRKG-E--KYKSVKLLVKVEF 580 (581)
T ss_pred EECC---C--CCCCcEEEEEEcchhhhhCc------cceEEccCCCc-C--CCCCeeEEEEEEe
Confidence 9999 3 56899999999999999864 44578873332 2 2223466666654
No 225
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.75 E-value=3.2e-08 Score=115.84 Aligned_cols=112 Identities=21% Similarity=0.405 Sum_probs=89.7
Q ss_pred EEEEEEEEeecCC----------CCCcEEEEEECC-----eEEeec-CccCCCCCeEeeEEEEEEecCCCceEEEEEEec
Q 001987 5 RLYVYVLQGQDLL----------AKDSYVKVQIGK-----HKSKSR-ILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQH 68 (985)
Q Consensus 5 ~L~V~V~~Ar~L~----------~~DPyv~v~l~~-----~~~kT~-v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~ 68 (985)
+|+|+|+.+.+++ .+||||.|.+-+ ...+|+ +..|+-||.|+|+|.|.+..+.-.-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999776 579999999864 348899 566699999999999999889999999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEE
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
| ..++|+|+|+..+|+..|..+ .+-++|.+. .|. .-....|.+.+.+.
T Consensus 697 d-----~~~~ddF~GQ~tlP~~~L~~G------yRhVpL~~~-~G~--~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 D-----YIGKDDFIGQTTLPVSELRQG------YRHVPLLSR-EGE--ALSSASLFVRIAIV 744 (746)
T ss_pred C-----CCCcccccceeeccHHHhhCc------eeeeeecCC-CCc--cccceeEEEEEEEe
Confidence 9 467899999999999999865 233777733 322 23445666666654
No 226
>PLN02228 Phosphoinositide phospholipase C
Probab=98.67 E-value=1.7e-07 Score=109.68 Aligned_cols=115 Identities=19% Similarity=0.334 Sum_probs=91.8
Q ss_pred cEEEEEEEEeecCC------------CCCcEEEEEECC-----eEEeecCccCCCCCeE-eeEEEEEEecCCCceEEEEE
Q 001987 4 TRLYVYVLQGQDLL------------AKDSYVKVQIGK-----HKSKSRILKNNSNPVW-NEEFVFRVHNIDDEELVVSV 65 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~w-nE~f~f~v~~~~~~~L~~~V 65 (985)
..|+|+|+.|++|+ ..||||+|.+.+ .+.+|++++++.||.| ||+|.|.+..+.-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 47999999999873 268999999853 3579999999999999 99999998777788999999
Q ss_pred EecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 66 FQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 66 ~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
+|+| . .+.++|+|+..+||..|..+ .+.++|.+..+ . .-....|++.+.+.+.
T Consensus 511 ~D~d---~--~~~d~figq~~lPv~~Lr~G------YR~VpL~~~~G-~--~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 511 QDYD---N--DTQNDFAGQTCLPLPELKSG------VRAVRLHDRAG-K--AYKNTRLLVSFALDPP 563 (567)
T ss_pred EeCC---C--CCCCCEEEEEEcchhHhhCC------eeEEEccCCCC-C--CCCCeEEEEEEEEcCc
Confidence 9998 3 56899999999999999754 45678873333 2 2235678888887553
No 227
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.62 E-value=1.1e-07 Score=109.95 Aligned_cols=102 Identities=21% Similarity=0.264 Sum_probs=84.7
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------EEEEeeeccCCCCCeEe-EEEEEEeecCCCCEEEEEEEec
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG------KTRTSSVQLQTCDPQWH-DILEFDAMEEPPSVLDVEVFDF 606 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~~~~tlnP~Wn-e~f~f~v~~~~~~~L~v~V~D~ 606 (985)
....|.|.|+.|+.|+..+ .|..-|||.|.+-| ..++|.++.+++||+|| |.|+|.+.++.-..|++.|||.
T Consensus 1063 ~p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1063 LPMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEE 1141 (1267)
T ss_pred cceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecc
Confidence 3468999999999999644 45667999999843 34555668999999999 9999998888888999999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
|. |+...|||++..|+..+..+-. -++|..
T Consensus 1142 Dm-fs~~~FiaqA~yPv~~ik~GfR---sVpLkN 1171 (1267)
T KOG1264|consen 1142 DM-FSDPNFLAQATYPVKAIKSGFR---SVPLKN 1171 (1267)
T ss_pred cc-cCCcceeeeeecchhhhhccce---eeeccc
Confidence 99 8888899999999999887653 346664
No 228
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.61 E-value=9.9e-08 Score=106.26 Aligned_cols=117 Identities=21% Similarity=0.467 Sum_probs=98.9
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECCeEEeecCccCCCCCeEe-eEEEEEEe--cCCCceEEEEEEecCCCC
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGKHKSKSRILKNNSNPVWN-EEFVFRVH--NIDDEELVVSVFQHNDDS 72 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~~~~kT~v~~~t~nP~wn-E~f~f~v~--~~~~~~L~~~V~D~d~~~ 72 (985)
.++|.|+|..||+|| ..|.||.|.+.+..++|.|..+++||.|| +.|.|+|. +..+..|.+.+.|+|
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d--- 78 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD--- 78 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc---
Confidence 578999999999999 57899999999999999999999999999 77999997 678899999999999
Q ss_pred CCCCCCCCeeEEEEEeCccccccC-------CCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 73 GLFGSSGELMGRVRVPVSSIAAED-------NHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 73 ~~~~~~d~~lG~~~i~L~~l~~~~-------~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
. .+.+|-||.+.|++..+..++ .++....|+++.+.- ...+|+|.+-+..
T Consensus 79 t--ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-----hgirgeinvivkv 135 (1169)
T KOG1031|consen 79 T--YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-----HGIRGEINVIVKV 135 (1169)
T ss_pred c--cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-----ccccceeEEEEEE
Confidence 4 578999999999998887552 224456799998332 3468999887665
No 229
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.60 E-value=1.4e-07 Score=84.76 Aligned_cols=79 Identities=24% Similarity=0.441 Sum_probs=68.6
Q ss_pred EEEEEEEeecCC---------CCCcEEEEEECCe-EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCC
Q 001987 6 LYVYVLQGQDLL---------AKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 6 L~V~V~~Ar~L~---------~~DPyv~v~l~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~ 75 (985)
|.|+|..||||. .+||||.|.+++. +.||++. .||.|||+|.|++ .....+.|.|||..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~V--dk~nEiel~VyDk~------ 69 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPV--EKNNEEEVIVYDKG------ 69 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEe--cCCcEEEEEEEeCC------
Confidence 689999999998 5799999999875 7999885 7999999999999 36899999999988
Q ss_pred CCCCCeeEEEEEeCcccccc
Q 001987 76 GSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l~~~ 95 (985)
....-.||..-+.|+++..+
T Consensus 70 ~~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 70 GDQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred CCeecceeeehhhHHHHHHH
Confidence 23556899999999998765
No 230
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.43 E-value=5.6e-07 Score=104.26 Aligned_cols=89 Identities=26% Similarity=0.399 Sum_probs=77.4
Q ss_pred CCcEEEEEEEEeecCC-----CCCcEEEEEECC------eEEeecCccCCCCCeEe-eEEEEEEecCCCceEEEEEEecC
Q 001987 2 VSTRLYVYVLQGQDLL-----AKDSYVKVQIGK------HKSKSRILKNNSNPVWN-EEFVFRVHNIDDEELVVSVFQHN 69 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~-----~~DPyv~v~l~~------~~~kT~v~~~t~nP~wn-E~f~f~v~~~~~~~L~~~V~D~d 69 (985)
..++|.|.|+.||.|+ .+-|||.|.+.+ ..++|.|..|++||+|| |.|.|.|..|.-..|+|.|||.|
T Consensus 1063 ~p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1063 LPMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred cceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence 3578999999999999 345999999963 33667778899999999 99999999999999999999999
Q ss_pred CCCCCCCCCCCeeEEEEEeCcccccc
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~ 95 (985)
+.+...|||++..|+..+..+
T Consensus 1143 -----mfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1143 -----MFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred -----ccCCcceeeeeecchhhhhcc
Confidence 457778999999999999865
No 231
>PLN02352 phospholipase D epsilon
Probab=98.28 E-value=4.2e-06 Score=100.42 Aligned_cols=115 Identities=10% Similarity=0.172 Sum_probs=87.2
Q ss_pred CeEEEEEEEEeecCCCC----CCC-CCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCC
Q 001987 535 GWVLTVALVEGVNLASS----EMT-GLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDG 608 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~----d~~-g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~ 608 (985)
.|.|.++|.+|+-+... +.. ...||||.|.+++. ..+| .+.-||+|||.|.+.|.......+.|+|.| +
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-~- 83 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-K- 83 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-C-
Confidence 57999999999843322 111 12399999999864 4577 556699999999999654444789999988 2
Q ss_pred CCCCCCccceEEEEeeccccCcc-cceEEEccccccCCcce-eEEEEEeeec
Q 001987 609 PFDQATSLGHAEINFLKHTSTEL-ADMWVSLEGKLAQSAQS-KVHLRIFLEN 658 (985)
Q Consensus 609 ~~~~dd~lG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~g-~l~l~~~ls~ 658 (985)
..+||++.||+.++..+.. .+.|+++.+..+.+..| +||+++.|..
T Consensus 84 ----~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 131 (758)
T PLN02352 84 ----CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRP 131 (758)
T ss_pred ----CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEE
Confidence 3689999999999988765 89999998866555555 8888886543
No 232
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=98.21 E-value=7.5e-07 Score=75.90 Aligned_cols=60 Identities=32% Similarity=0.535 Sum_probs=46.3
Q ss_pred eecCCCcchhhhhhhhhhh-hccccceeEeeeeEeeeeccccCcce-EEEEecccccccccc
Q 001987 656 LENNNGVETIKEYLTKMEK-EVGKKGRLFLSARIVGFYANLFGNKT-KFFFLWEDIEDIQIL 715 (985)
Q Consensus 656 ls~~~~~~~l~~~l~~lek-~i~~~gr~y~s~~~~~f~snif~~~~-~~~i~~~di~~i~~~ 715 (985)
+..+.++..+.++.|.+.. .+...|+||++.+++||+|+.++..+ ++.|||.||.+|+|.
T Consensus 7 F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~ 68 (69)
T PF02893_consen 7 FKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKE 68 (69)
T ss_dssp ----TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE
T ss_pred ccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEe
Confidence 4466677777888888888 78888999999999999999999999 999999999999875
No 233
>PLN02352 phospholipase D epsilon
Probab=98.18 E-value=1.2e-05 Score=96.61 Aligned_cols=114 Identities=18% Similarity=0.324 Sum_probs=88.5
Q ss_pred CCcEEEEEEEEeecCC-----------CCCcEEEEEECCeE-EeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecC
Q 001987 2 VSTRLYVYVLQGQDLL-----------AKDSYVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHN 69 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~-----------~~DPyv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d 69 (985)
+++.|.++|++|+-+. ..||||.|.+++.+ .|| .+..||.|+|+|.+.+-......+.|.|.|-.
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~~ 84 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTKC 84 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecCC
Confidence 6899999999998443 23999999998755 888 56669999999999984334468999998732
Q ss_pred CCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (985)
.+||++.+|+.++..++. ....|+++. ...+++. . ..+|++++.|.+..
T Consensus 85 ----------~~ig~~~~p~~~~~~g~~--~~~~~~~~~-~~~~~p~-~-~~~~~~~~~~~~~~ 133 (758)
T PLN02352 85 ----------SILGRFHIQAHQIVTEAS--FINGFFPLI-MENGKPN-P-ELKLRFMLWFRPAE 133 (758)
T ss_pred ----------eEEEEEEEEHHHhhCCCc--ccceEEEcc-cCCCCCC-C-CCEEEEEEEEEEhh
Confidence 699999999999987632 378999998 4444432 2 26999999998854
No 234
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.12 E-value=1.5e-06 Score=104.49 Aligned_cols=105 Identities=24% Similarity=0.301 Sum_probs=90.1
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeec---CCCCEEEEEEEec
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAME---EPPSVLDVEVFDF 606 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~---~~~~~L~v~V~D~ 606 (985)
.|+|+|-|..|++|+-..-+...||||+.++- ..++||+++++|.||.|||...+.-.+ .....|.+.||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 57999999999999766657789999999994 247899999999999999999887221 2346899999999
Q ss_pred CCCCCCCCccceEEEEeeccccCcccceEEEccc
Q 001987 607 DGPFDQATSLGHAEINFLKHTSTELADMWVSLEG 640 (985)
Q Consensus 607 d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~ 640 (985)
+. +..+.++|.+.|+|.++...+....||+|..
T Consensus 1603 ~~-~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GG-LLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred cc-eeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 98 7899999999999999988888889999974
No 235
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=98.08 E-value=2.1e-06 Score=71.24 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=47.3
Q ss_pred CcchhhhhhhhhhhhccccceeEeeeeEeeeeccccCcce-EEEEecccccccccc
Q 001987 661 GVETIKEYLTKMEKEVGKKGRLFLSARIVGFYANLFGNKT-KFFFLWEDIEDIQIL 715 (985)
Q Consensus 661 ~~~~l~~~l~~lek~i~~~gr~y~s~~~~~f~snif~~~~-~~~i~~~di~~i~~~ 715 (985)
++..+.+|.|.+.+....+||+|++.+++||+|+.+|+.+ ++.||+.||..|+|.
T Consensus 5 ~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 5 EEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS 60 (61)
T ss_pred CcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence 3444556777777667788999999999999999999999 999999999999875
No 236
>PLN02964 phosphatidylserine decarboxylase
Probab=98.05 E-value=3.7e-06 Score=100.28 Aligned_cols=93 Identities=16% Similarity=0.283 Sum_probs=79.1
Q ss_pred ccCCCeEEEEEEEEeecCCCCCCCCCCCcEE-EEEECCEEEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCC
Q 001987 531 AQGDGWVLTVALVEGVNLASSEMTGLSDPYV-VFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (985)
Q Consensus 531 ~~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv-~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~ 609 (985)
+..-.|.+.+++++|+ ++ ..|||. ++++|.|.+||.+.++|+||+||+...|.+........++.|||+|.
T Consensus 49 ~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~- 120 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR- 120 (644)
T ss_pred cccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC-
Confidence 3345789999999998 44 468885 56779999999999999999999999999877777778999999999
Q ss_pred CCCCCccceEEEEeeccccCcc
Q 001987 610 FDQATSLGHAEINFLKHTSTEL 631 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~~l~~~~~ 631 (985)
+++++++|.++++|..+...+.
T Consensus 121 ~s~n~lv~~~e~~~t~f~~kqi 142 (644)
T PLN02964 121 LSKNTLVGYCELDLFDFVTQEP 142 (644)
T ss_pred CCHHHhhhheeecHhhccHHHH
Confidence 8999999999999987655443
No 237
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.01 E-value=3.9e-06 Score=101.10 Aligned_cols=98 Identities=26% Similarity=0.496 Sum_probs=84.4
Q ss_pred CcEEEEEEEEeecCC------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEE-Ee--cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFR-VH--NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~-v~--~~~~~~L~~~V~D~ 68 (985)
+++|.|-|.-|++|+ -+||||+.++.+ .+.||+++++|.||.|||.+.+. ++ ....+.|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 578999999999996 689999999974 35899999999999999999988 54 46679999999999
Q ss_pred CCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEee
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLE 108 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~ 108 (985)
+ . ...+.|+|.+.|||.++....+ ...||+|.
T Consensus 1603 ~---~--~~en~~lg~v~i~L~~~~l~kE---~~~Wy~lg 1634 (1639)
T KOG0905|consen 1603 G---G--LLENVFLGGVNIPLLKVDLLKE---SVGWYNLG 1634 (1639)
T ss_pred c---c--eeeeeeeeeeecchhhcchhhh---hcceeecc
Confidence 8 3 4678999999999999987632 45899997
No 238
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.70 E-value=7.2e-05 Score=69.56 Aligned_cols=100 Identities=21% Similarity=0.436 Sum_probs=77.2
Q ss_pred EEEEEEEeecCC-------------------CCCcEEEEEEC----CeEEeecCccCCCCCeEeeEEEEEEe----c---
Q 001987 6 LYVYVLQGQDLL-------------------AKDSYVKVQIG----KHKSKSRILKNNSNPVWNEEFVFRVH----N--- 55 (985)
Q Consensus 6 L~V~V~~Ar~L~-------------------~~DPyv~v~l~----~~~~kT~v~~~t~nP~wnE~f~f~v~----~--- 55 (985)
|.|.|++|-+|. .-|+||.+.+. ++..+|+++-++..|.|+..+.|.++ .
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 468888998887 46899999964 45699999999999999999999864 1
Q ss_pred --------CCCceEEEEEEecCCCCCC-----CCCCCCeeEEEEEeCccccccCCCCCCCeEEEe
Q 001987 56 --------IDDEELVVSVFQHNDDSGL-----FGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSL 107 (985)
Q Consensus 56 --------~~~~~L~~~V~D~d~~~~~-----~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L 107 (985)
.....+.|+||+..+.++. ...+|-.||.+.||+.++.... .-...||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r--sGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR--SGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc--cCccccccC
Confidence 2346899999998854320 1235669999999999998753 235679875
No 239
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=4.4e-05 Score=81.52 Aligned_cols=87 Identities=24% Similarity=0.319 Sum_probs=71.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C--EEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEecCCC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN---G--KTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFDGP 609 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~---~--~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d~~ 609 (985)
-|.|+++++..|...|.+|.+||||..++. + -+.+|.+.++|+||.+|++|.|.+.. .....+.|.|||.|.
T Consensus 234 ~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~- 312 (362)
T KOG1013|consen 234 GLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDI- 312 (362)
T ss_pred ceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCC-
Confidence 468999999999999999999999999984 2 35688899999999999999998521 234589999999997
Q ss_pred CCCCCccceEEEEee
Q 001987 610 FDQATSLGHAEINFL 624 (985)
Q Consensus 610 ~~~dd~lG~~~i~l~ 624 (985)
-...|++|-...-+.
T Consensus 313 G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 313 GKSNDSIGGSMLGGY 327 (362)
T ss_pred CcCccCCCccccccc
Confidence 367899987655443
No 240
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.50 E-value=4.6e-05 Score=91.44 Aligned_cols=83 Identities=25% Similarity=0.510 Sum_probs=73.2
Q ss_pred cEEEEEEEEeecCC------CCCcEEEEEECCeE--EeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCC
Q 001987 4 TRLYVYVLQGQDLL------AKDSYVKVQIGKHK--SKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~------~~DPyv~v~l~~~~--~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~ 75 (985)
..++|+|++|-+|. .+||||+|.+++.. -++..+.+|+||+|++.|.+....+....|.++|||+| .
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D-----~ 687 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHD-----L 687 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEee-----c
Confidence 35689999999998 79999999999866 67888999999999999999876788899999999999 3
Q ss_pred CCCCCeeEEEEEeCcc
Q 001987 76 GSSGELMGRVRVPVSS 91 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~ 91 (985)
.++|+.||+..++|..
T Consensus 688 ~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 688 EAQDEKIGETTIDLEN 703 (1105)
T ss_pred ccccchhhceehhhhh
Confidence 6789999999988653
No 241
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.32 E-value=0.00065 Score=78.27 Aligned_cols=139 Identities=16% Similarity=0.229 Sum_probs=99.9
Q ss_pred CCCcEEEEEEC-------------------CeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCC
Q 001987 18 AKDSYVKVQIG-------------------KHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSS 78 (985)
Q Consensus 18 ~~DPyv~v~l~-------------------~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~ 78 (985)
+.||.|.+... .+..+|+++.+.+||.|-+.|.+.+.....+.|++.++|.+.... ....
T Consensus 10 ~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~-~l~~ 88 (529)
T KOG1327|consen 10 KSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTP-DLSS 88 (529)
T ss_pred ccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccC-Ccch
Confidence 66777776653 234699999999999999999998778889999999999884311 1457
Q ss_pred CCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecCCeeeEEEEeeeccCCCCCCCCCCCC
Q 001987 79 GELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKGHNLSSNRLLYLHSNVSSNESKELED 158 (985)
Q Consensus 79 d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~~~l~v~v~~~~a~~L~~~d~~g~sd 158 (985)
++|+|++.+.++.+..... ...-+.+. +. + ....|.|.+.++-.. +...+.....++++|.+.|..+++|
T Consensus 89 ~dflg~~~c~l~~ivs~~~---~~~~l~~~-~~--~--~~~~g~iti~aee~~--~~~~~~~~~~~~~~ld~kd~f~ksd 158 (529)
T KOG1327|consen 89 ADFLGTAECTLSQIVSSSG---LTGPLLLK-PG--K--NAGSGTITISAEEDE--SDNDVVQFSFRAKNLDPKDFFSKSD 158 (529)
T ss_pred hcccceeeeehhhhhhhhh---hhhhhhcc-cC--c--cCCcccEEEEeeccc--ccCceeeeeeeeeecCcccccccCC
Confidence 8999999999999886522 11112222 11 1 334677777766533 3334555555699999999999999
Q ss_pred CeEEEEEcC
Q 001987 159 PCVLSHDVS 167 (985)
Q Consensus 159 P~vkv~l~~ 167 (985)
||..++-..
T Consensus 159 ~~l~~~~~~ 167 (529)
T KOG1327|consen 159 PYLEFYKRV 167 (529)
T ss_pred cceEEEEec
Confidence 999987664
No 242
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.27 E-value=0.00018 Score=62.18 Aligned_cols=82 Identities=21% Similarity=0.425 Sum_probs=65.2
Q ss_pred EEEEEEeecCC-----CCCc--EEE--EEECC-eEEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCCCCC
Q 001987 7 YVYVLQGQDLL-----AKDS--YVK--VQIGK-HKSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDSGL 74 (985)
Q Consensus 7 ~V~V~~Ar~L~-----~~DP--yv~--v~l~~-~~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~~~~ 74 (985)
-++|++|+||. .-+| |++ +.+.+ -..||.+.+...||+|.|+|.|.+. ...+-.|.|.|+..-
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~----- 76 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQT----- 76 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccC-----
Confidence 47899999998 2344 444 33333 4589999999999999999999965 678889999999844
Q ss_pred CCCCCCeeEEEEEeCcccccc
Q 001987 75 FGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 75 ~~~~d~~lG~~~i~L~~l~~~ 95 (985)
.+...||.+.+.|+++-.+
T Consensus 77 --~RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 77 --PRKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred --CccceeeEEEeecccCCHH
Confidence 4789999999999988754
No 243
>PLN02964 phosphatidylserine decarboxylase
Probab=97.25 E-value=0.00044 Score=82.93 Aligned_cols=88 Identities=19% Similarity=0.322 Sum_probs=73.8
Q ss_pred CCcEEEEEEEEeecCCCCCcEEE-EEECCeEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCC
Q 001987 2 VSTRLYVYVLQGQDLLAKDSYVK-VQIGKHKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGE 80 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~~~DPyv~-v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~ 80 (985)
+.+...++|++|+ +...|||.. ++++.+.+||.+.++|+||+||+...|.+........+|.|||.+ + .+.++
T Consensus 52 ~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~s~n~ 125 (644)
T PLN02964 52 FSGIALLTLVGAE-MKFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETN---R--LSKNT 125 (644)
T ss_pred ccCeEEEEeehhh-hccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecC---C--CCHHH
Confidence 4578889999998 336788655 667788899999999999999999999986555556799999999 5 57999
Q ss_pred eeEEEEEeCcccccc
Q 001987 81 LMGRVRVPVSSIAAE 95 (985)
Q Consensus 81 ~lG~~~i~L~~l~~~ 95 (985)
.+|.+.++|.++...
T Consensus 126 lv~~~e~~~t~f~~k 140 (644)
T PLN02964 126 LVGYCELDLFDFVTQ 140 (644)
T ss_pred hhhheeecHhhccHH
Confidence 999999999888765
No 244
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.16 E-value=0.00037 Score=64.95 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=72.3
Q ss_pred EEEEEEeecCCCCC-------C------CCCCCcEEEEEE----CCEEEEeeeccCCCCCeEeEEEEEEee--------c
Q 001987 539 TVALVEGVNLASSE-------M------TGLSDPYVVFTC----NGKTRTSSVQLQTCDPQWHDILEFDAM--------E 593 (985)
Q Consensus 539 ~V~v~~a~~L~~~d-------~------~g~~DPyv~v~~----~~~~~kT~~~~~tlnP~Wne~f~f~v~--------~ 593 (985)
.|.|++|.+|++.- . .=..++||.+.+ ++..++|+++-++..|.|+..++|.+. .
T Consensus 2 sv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge 81 (143)
T cd08683 2 SVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGE 81 (143)
T ss_pred eEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCc
Confidence 46666666665421 0 112589999996 367899999999999999999999863 0
Q ss_pred -------CCCCEEEEEEEecCCCC---------CCCCccceEEEEeecccc-CcccceEEEc
Q 001987 594 -------EPPSVLDVEVFDFDGPF---------DQATSLGHAEINFLKHTS-TELADMWVSL 638 (985)
Q Consensus 594 -------~~~~~L~v~V~D~d~~~---------~~dd~lG~~~i~l~~l~~-~~~~~~w~~L 638 (985)
.....+.++||+.+... .+|-.||.+.||+.++.. ......||++
T Consensus 82 ~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 82 AISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred cccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11347999999987421 234578999999999654 4457889885
No 245
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.96 E-value=0.00089 Score=73.41 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=102.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCCeEeEEEEEEeecCC-----------CCEEE
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN-----GKTRTSSVQLQTCDPQWHDILEFDAMEEP-----------PSVLD 600 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~~~~tlnP~Wne~f~f~v~~~~-----------~~~L~ 600 (985)
.|.+.|+++.+++.....--.|-|+++.+. .++.+|.+++.|..|.|+|.|.+.+...+ ..-++
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 677888899888865433345688888773 46678889999999999999999964322 23599
Q ss_pred EEEEecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeeecCCCcchhhhhhh
Q 001987 601 VEVFDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNGVETIKEYLT 670 (985)
Q Consensus 601 v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~~~~l~~~l~ 670 (985)
|+||.+..-+.+|.++|.+.|.|..+...-.....++|.+..+ ..+|+|.+++-+..+-+...+++...
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK-~vGGkLevKvRiR~Pi~~~~~qhite 516 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRK-AVGGKLEVKVRIRQPIGDAKAQHITE 516 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcccchhhceecccccc-ccCCeeEEEEEEecccchhHHHHHHh
Confidence 9999998744678899999999998877766777888876333 46799999999888877666555543
No 246
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.91 E-value=0.0013 Score=75.92 Aligned_cols=86 Identities=19% Similarity=0.335 Sum_probs=69.8
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEEC------CEEEEeeeccCCCCCeEeEEEEEEe----ecCCCCEEEEEEEecCCCC
Q 001987 541 ALVEGVNLASSEMTGLSDPYVVFTCN------GKTRTSSVQLQTCDPQWHDILEFDA----MEEPPSVLDVEVFDFDGPF 610 (985)
Q Consensus 541 ~v~~a~~L~~~d~~g~~DPyv~v~~~------~~~~kT~~~~~tlnP~Wne~f~f~v----~~~~~~~L~v~V~D~d~~~ 610 (985)
-.++|++|..+|..+++|||..++-- ...++|.++++++||.|-. |.+.. ..++...+.+.+||+|. .
T Consensus 141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~-~ 218 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDS-N 218 (529)
T ss_pred eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCC-C
Confidence 34568999999999999999988752 1357999999999999963 33332 23556789999999998 5
Q ss_pred CCCCccceEEEEeecccc
Q 001987 611 DQATSLGHAEINFLKHTS 628 (985)
Q Consensus 611 ~~dd~lG~~~i~l~~l~~ 628 (985)
+++++||.+..++..+..
T Consensus 219 ~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 219 GKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCcCceeEecccHHHhcc
Confidence 889999999999999865
No 247
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.00089 Score=72.96 Aligned_cols=107 Identities=22% Similarity=0.316 Sum_probs=87.9
Q ss_pred CCCeEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC--CE---EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEe-
Q 001987 533 GDGWVLTVALVEGVNLASSEM-TGLSDPYVVFTCN--GK---TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFD- 605 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~-~g~~DPyv~v~~~--~~---~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D- 605 (985)
...|.|.|.|++|++|..+-- ...++|||+|++- +. +.+|+...+|+.|.+-+...|. -.++...|.++||-
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~-~sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD-QSPPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc-cCCCccEEEEEEecc
Confidence 346789999999999987653 3378999999994 22 4688899999999998899988 67778899999985
Q ss_pred cCCCCCCCCccceEEEEeeccccCc-ccceEEEcccc
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTE-LADMWVSLEGK 641 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~-~~~~w~~L~~~ 641 (985)
+.+ ..++.|+|.+.|-+.++.... ....||+|-+.
T Consensus 345 ygR-md~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGR-MDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccc-cchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 444 567789999999999987766 77889999874
No 248
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.0012 Score=71.91 Aligned_cols=103 Identities=17% Similarity=0.295 Sum_probs=83.7
Q ss_pred CcEEEEEEEEeecCC-------CCCcEEEEEECC-----eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL-------AKDSYVKVQIGK-----HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-------~~DPyv~v~l~~-----~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~ 70 (985)
.+.|.|-|++|++|. .++|||+|+++. .+.+|+...+|++|.+-+...|+- .+....|.+.||-.-.
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~-sp~~k~Lq~tv~gdyg 346 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ-SPPGKYLQGTVWGDYG 346 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc-CCCccEEEEEEecccc
Confidence 357899999999998 689999999974 358999999999999999999886 5788899999985331
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCC
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKT 112 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~ 112 (985)
+ +..+.|+|-+.+-+.++.... .+...||+|-....
T Consensus 347 --R--md~k~fmg~aqi~l~eL~ls~--~~~igwyKlfgsss 382 (405)
T KOG2060|consen 347 --R--MDHKSFMGVAQIMLDELNLSS--SPVIGWYKLFGSSS 382 (405)
T ss_pred --c--cchHHHhhHHHHHhhhhcccc--ccceeeeeccCCcc
Confidence 3 456779999999999998763 36778999984443
No 249
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.15 E-value=0.015 Score=69.63 Aligned_cols=85 Identities=33% Similarity=0.554 Sum_probs=69.7
Q ss_pred CCcEEEEEEEEeecCC--CCCcEEEEEECC-------eEEeecCcc-CCCCCeEeeE-EEEE-EecCCCceEEEEEEecC
Q 001987 2 VSTRLYVYVLQGQDLL--AKDSYVKVQIGK-------HKSKSRILK-NNSNPVWNEE-FVFR-VHNIDDEELVVSVFQHN 69 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~--~~DPyv~v~l~~-------~~~kT~v~~-~t~nP~wnE~-f~f~-v~~~~~~~L~~~V~D~d 69 (985)
+-.+|.|+||++.-|. +...||.|.+-+ ..+||++.. |+.||+|+|+ |.|. |--+.-..|+|.||+.+
T Consensus 701 IA~t~sV~VISgqFLSdrkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg 780 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG 780 (1189)
T ss_pred EEeeEEEEEEeeeeccccccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC
Confidence 3468999999999998 788999999842 347888765 4899999965 8998 43577789999999988
Q ss_pred CCCCCCCCCCCeeEEEEEeCcccccc
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~ 95 (985)
. .|||+=.+|+..+..+
T Consensus 781 ---g------K~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 781 ---G------KFIGQRILPVDGLNAG 797 (1189)
T ss_pred ---C------ceeeeeccchhcccCc
Confidence 2 6999999999998764
No 250
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.93 E-value=0.0055 Score=67.42 Aligned_cols=115 Identities=17% Similarity=0.336 Sum_probs=86.0
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEEC-----CeEEeecCccCCCCCeEeeEEEEEEec-C----------CCceEE
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQIG-----KHKSKSRILKNNSNPVWNEEFVFRVHN-I----------DDEELV 62 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l~-----~~~~kT~v~~~t~nP~wnE~f~f~v~~-~----------~~~~L~ 62 (985)
.|.+.|+++++++ ..|-||++.+- .++.+|.++++|.+|.|+|.|.+.+.. + ....+.
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 4556677787777 35778888773 366899999999999999999999842 1 125689
Q ss_pred EEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 63 VSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 63 ~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
|+||+.. .| ..+|.++|.+.+.|..|... ......++|.+.+ ....|.|.+.+..-.
T Consensus 448 feifhkg---gf-~rSdkl~gt~nikle~Len~---cei~e~~~l~DGR-----K~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 448 FEIFHKG---GF-NRSDKLTGTGNIKLEILENM---CEICEYLPLKDGR-----KAVGGKLEVKVRIRQ 504 (523)
T ss_pred EEEeecc---cc-ccccceeceeeeeehhhhcc---cchhhceeccccc-----cccCCeeEEEEEEec
Confidence 9999999 64 67899999999998888754 2234557776333 346788888887743
No 251
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.81 E-value=0.028 Score=67.33 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=80.4
Q ss_pred CCeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------EEEEeeec-cCCCCCeEe-EEEEEE-eecCCCCEEEEEE
Q 001987 534 DGWVLTVALVEGVNLASSEMTGLSDPYVVFTCNG-------KTRTSSVQ-LQTCDPQWH-DILEFD-AMEEPPSVLDVEV 603 (985)
Q Consensus 534 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~-------~~~kT~~~-~~tlnP~Wn-e~f~f~-v~~~~~~~L~v~V 603 (985)
..+.+.|+||+|.=|..++ ..-||.|.+-| +.++|+++ .+++||+|+ |.|.|. |.-+.-..|+|.|
T Consensus 701 IA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiav 776 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAV 776 (1189)
T ss_pred EEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeee
Confidence 3578999999999998776 34899998842 45788874 679999999 578998 3445566999999
Q ss_pred EecCCCCCCCCccceEEEEeeccccCcccceEEEccccccCCcc-eeEEEEE
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQ-SKVHLRI 654 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~-g~l~l~~ 654 (985)
|+... .+||+-.+|+.-+..+.. .+.|.....+... ..|.+.+
T Consensus 777 yeEgg-----K~ig~RIlpvd~l~~GYr---hv~LRse~Nqpl~lp~Lfv~i 820 (1189)
T KOG1265|consen 777 YEEGG-----KFIGQRILPVDGLNAGYR---HVCLRSESNQPLTLPALFVYI 820 (1189)
T ss_pred eccCC-----ceeeeeccchhcccCcce---eEEecCCCCCccccceeEEEE
Confidence 99664 589999999999888763 4567664444322 2344444
No 252
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.80 E-value=0.081 Score=52.73 Aligned_cols=101 Identities=16% Similarity=0.325 Sum_probs=69.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEEE----EeeeccCCCCCeEeEEEEEEee--c-CCCCEEEEEEEecC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR----TSSVQLQTCDPQWHDILEFDAM--E-EPPSVLDVEVFDFD 607 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~tlnP~Wne~f~f~v~--~-~~~~~L~v~V~D~d 607 (985)
.++|+|+.|.++...+ .+|-||.+.+ |++.. .|+.+.- .+|.|||.++|++. + +....|.|+||+..
T Consensus 9 ~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 9 NLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 5789999999998754 5788888755 55433 3443433 68999999999862 2 34569999999976
Q ss_pred CCCC---CCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEee
Q 001987 608 GPFD---QATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 608 ~~~~---~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~l 656 (985)
..-+ ..-.||.+.++|-+-.. .-.+|...|.+|.
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~~~---------------~Lr~G~~~L~lW~ 121 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDYTD---------------TLVSGKMALNLWP 121 (158)
T ss_pred cccCCCCceEEEEEEEEEEECCCC---------------hhhCCCEEEEEEc
Confidence 4101 12468999998887321 1246778888875
No 253
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.79 E-value=0.11 Score=58.14 Aligned_cols=121 Identities=16% Similarity=0.284 Sum_probs=92.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeec-------CCCCEEEEEEEecCCCC
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAME-------EPPSVLDVEVFDFDGPF 610 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~-------~~~~~L~v~V~D~d~~~ 610 (985)
+.|.|++|+|.+... .-.-.+..++++....|..+..+-.|.||.++...+.. .....|++++|-.|..-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 568999999999763 44566778899999999999999999999999888521 33558999999999323
Q ss_pred CCCCccceEEEEeecc---ccC--cccceEEEcccc--ccCCcceeEEEEEeeecCCC
Q 001987 611 DQATSLGHAEINFLKH---TST--ELADMWVSLEGK--LAQSAQSKVHLRIFLENNNG 661 (985)
Q Consensus 611 ~~dd~lG~~~i~l~~l---~~~--~~~~~w~~L~~~--~~~~~~g~l~l~~~ls~~~~ 661 (985)
+..+.||.+.+||..+ ..+ .....||+|.+. .-.....+|.|.+.+.....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 6778999999999988 444 467789999875 33334556777776655443
No 254
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.73 E-value=0.11 Score=51.88 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=63.1
Q ss_pred CcEEEEEEEEeecCC---CCCcEEEEEE--CCeE----EeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEecCC
Q 001987 3 STRLYVYVLQGQDLL---AKDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHND 70 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~---~~DPyv~v~l--~~~~----~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~d~ 70 (985)
...++|+|+.|.++. .+|-||.+.+ +++. ..|+.+.. .++.|||.+.|+|. -+....|.|+||+...
T Consensus 7 ~~~~~v~i~~~~~~~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~ 85 (158)
T cd08398 7 NSNLRIKILCATYVNVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKG 85 (158)
T ss_pred CCCeEEEEEeeccCCCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEec
Confidence 567999999999998 5677888866 3322 24443433 67999999999875 4677899999999872
Q ss_pred CCCCCCCCCCeeEEEEEeCcccc
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIA 93 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~ 93 (985)
... .-.....+|.+.++|-+-.
T Consensus 86 ~~~-~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 86 RKG-AKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred ccC-CCCceEEEEEEEEEEECCC
Confidence 100 0012357999999987754
No 255
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.25 E-value=0.26 Score=55.20 Aligned_cols=120 Identities=16% Similarity=0.362 Sum_probs=92.4
Q ss_pred EEEEEEEeecCC---CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEe-------cCCCceEEEEEEecCCCCCCC
Q 001987 6 LYVYVLQGQDLL---AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVH-------NIDDEELVVSVFQHNDDSGLF 75 (985)
Q Consensus 6 L~V~V~~Ar~L~---~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~-------~~~~~~L~~~V~D~d~~~~~~ 75 (985)
+.|+|++|||.+ ...-.+..+++++...|..+..+-.|.||..+.-++. ......|+++.|..|. .
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~----~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG----S 77 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC----C
Confidence 578999999999 3344666888899999999999999999999998874 3567889999999882 1
Q ss_pred CCCCCeeEEEEEeCccc---cccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 76 GSSGELMGRVRVPVSSI---AAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 76 ~~~d~~lG~~~i~L~~l---~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
.+..+.||.+.+||..+ ... +....+.||+|-.-++. -.+..-+|+|++.....
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~-~~~~~~~W~~LL~~~~~--y~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEK-NQKQKPKWYKLLSSSSK--YKKHKPELLLSLSIEDD 134 (340)
T ss_pred CCcceeccEEEEEcccccccccc-ccccCCCeeEccccccc--cccCCccEEEEEEEecc
Confidence 35678999999999998 322 23467899999744221 12346788988888654
No 256
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.24 E-value=0.13 Score=50.73 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=84.1
Q ss_pred EEEEEEEEeecCCCCCC--CCCCCcE--EEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCC-------------CCEE
Q 001987 537 VLTVALVEGVNLASSEM--TGLSDPY--VVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEP-------------PSVL 599 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~--~g~~DPy--v~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~-------------~~~L 599 (985)
.|.|+|..|+-...--. .|..+.- +-+.+++|+++|+.++-+.+|.++|.|-|++.... ...|
T Consensus 10 yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pi 89 (156)
T PF15627_consen 10 YLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPI 89 (156)
T ss_pred EEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCce
Confidence 57788887765432111 0334444 44455799999999999999999999999974332 3468
Q ss_pred EEEEEecCCCCCCCCccceEEEEeeccccCcccceE--EEccccccC--CcceeEEEEEeeecC
Q 001987 600 DVEVFDFDGPFDQATSLGHAEINFLKHTSTELADMW--VSLEGKLAQ--SAQSKVHLRIFLENN 659 (985)
Q Consensus 600 ~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w--~~L~~~~~~--~~~g~l~l~~~ls~~ 659 (985)
++.|.--|. .+...++|.-.+++..+...+....+ +.|.|.... ...|.|++++.+-+.
T Consensus 90 hivli~~d~-~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 90 HIVLIRTDP-SGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred EEEEEEecC-CCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 898888886 45668999999999997665555334 444443322 457888888876443
No 257
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.03 E-value=0.18 Score=51.14 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=69.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEE----EEeeeccCCCCCeEeEEEEEEee--c-CCCCEEEEEEEecC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKT----RTSSVQLQTCDPQWHDILEFDAM--E-EPPSVLDVEVFDFD 607 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~~~~~tlnP~Wne~f~f~v~--~-~~~~~L~v~V~D~d 607 (985)
.++|+|+.+.+|...+ ..++-||.+.+ |++. ..|+.+.-+-+|.|||.++|++. . +....|.|+||+..
T Consensus 9 ~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 9 KFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 5799999999998622 34666776543 5554 35555555677999999999862 2 34569999999975
Q ss_pred CCCC----------------CCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeee
Q 001987 608 GPFD----------------QATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 608 ~~~~----------------~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
.. . .+..||.+.++|-+... .-.+|...|.+|..
T Consensus 87 ~~-~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~---------------~Lr~G~~~L~lW~~ 136 (173)
T cd08693 87 KK-AKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG---------------QLKTGDHTLYMWTY 136 (173)
T ss_pred cc-ccccccccccccccccCcceEEEEEeEEEEcccc---------------hhhcCCeEEEecCC
Confidence 31 1 13577777777766221 23567888888854
No 258
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=94.98 E-value=0.022 Score=49.65 Aligned_cols=95 Identities=13% Similarity=0.187 Sum_probs=66.5
Q ss_pred EEEEEEeecCCCCCCCCC-CCcEEE--EEECC-EEEEeeeccCCCCCeEeEEEEEEee--cCCCCEEEEEEEecCCCCCC
Q 001987 539 TVALVEGVNLASSEMTGL-SDPYVV--FTCNG-KTRTSSVQLQTCDPQWHDILEFDAM--EEPPSVLDVEVFDFDGPFDQ 612 (985)
Q Consensus 539 ~V~v~~a~~L~~~d~~g~-~DPyv~--v~~~~-~~~kT~~~~~tlnP~Wne~f~f~v~--~~~~~~L~v~V~D~d~~~~~ 612 (985)
-++|+.+++|.-....|. .--|++ +.+.. ..+||++.....||+++|+|.|.+. ..+.-.|.|.|+.. ..+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~---~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ---TPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc---CCc
Confidence 467888888865433222 223433 33333 4679999999999999999999963 33455899999992 257
Q ss_pred CCccceEEEEeeccccCcccceEEE
Q 001987 613 ATSLGHAEINFLKHTSTELADMWVS 637 (985)
Q Consensus 613 dd~lG~~~i~l~~l~~~~~~~~w~~ 637 (985)
.+-||.+.+.+.++..+ ..+.|..
T Consensus 79 Ke~iG~~sL~l~s~gee-E~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLSTQ-ETDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCHH-Hhhhhhc
Confidence 78999999999986543 3566754
No 259
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.82 E-value=0.23 Score=48.86 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=82.6
Q ss_pred cEEEEEEEEeecCC--C----CC--c--EEEEEECCeEEeecCccCCCCCeEeeEEEEEEecC-------------CCce
Q 001987 4 TRLYVYVLQGQDLL--A----KD--S--YVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVHNI-------------DDEE 60 (985)
Q Consensus 4 ~~L~V~V~~Ar~L~--~----~D--P--yv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~~~-------------~~~~ 60 (985)
..|++.|+.+|-.. . .+ . .+.+.+.+++++|+.+..+.+|.|+|.|.|+++.. ..+.
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 45888888887654 1 12 2 34455579999999999999999999999998622 1357
Q ss_pred EEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCC-CCCccccEEEEEEEEEec
Q 001987 61 LVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRK-FTNKDCGKILLTISLNGK 132 (985)
Q Consensus 61 L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~-~~~~~~G~I~lsl~~~~~ 132 (985)
|.+.|.-.| . .+...++|.-.+....+...+.. ..++.++ ..+.. ......|-|.|++++.|.
T Consensus 89 ihivli~~d---~--~~~~~Lv~s~~ldWR~vL~s~~~---~~~~~vE-L~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 89 IHIVLIRTD---P--SGETTLVGSHFLDWRKVLCSGNG---STSFTVE-LCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred eEEEEEEec---C--CCceEeeeeceehHHHHhccCCC---ccceeEE-EeccCCCCccceeEEEEEEEeecC
Confidence 788887777 2 34558999999998888866432 1244444 22211 113468999999988775
No 260
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.67 E-value=0.23 Score=49.53 Aligned_cols=108 Identities=14% Similarity=0.270 Sum_probs=71.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEE----EEeeeccCCCCCeEeEEEEEEee---cCCCCEEEEEEEecC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKT----RTSSVQLQTCDPQWHDILEFDAM---EEPPSVLDVEVFDFD 607 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~----~kT~~~~~tlnP~Wne~f~f~v~---~~~~~~L~v~V~D~d 607 (985)
.++|++....++...+ ....+-||.+.+ |++. ..|.......++.|||..+|++. -+....|.|+||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4678888888776521 234566666644 5542 24444444478999999999852 234569999999987
Q ss_pred CCCC--CCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeeecCCC
Q 001987 608 GPFD--QATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (985)
Q Consensus 608 ~~~~--~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~ 661 (985)
.. + .+..||.+.++|-+... .-.+|...|.+|.....+
T Consensus 88 ~~-~~~~~~~iG~~~~~lFd~~~---------------~L~~G~~~l~lW~~~~~~ 127 (156)
T cd08380 88 EP-GSKKEVPLGWVNVPLFDYKG---------------KLRQGMITLNLWPGKKTD 127 (156)
T ss_pred cC-CCCcceEEEEEeEEeEcccC---------------cEecCCEEEeccCCcccC
Confidence 52 3 45789999999887321 124677888887654443
No 261
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.63 E-value=0.2 Score=50.02 Aligned_cols=91 Identities=18% Similarity=0.325 Sum_probs=62.7
Q ss_pred CCCCcEEEEEE--CCEE----EEeeeccCCCCCeEeEEEEEEee---cCCCCEEEEEEEecCCCCCCCCccceEEEEeec
Q 001987 555 GLSDPYVVFTC--NGKT----RTSSVQLQTCDPQWHDILEFDAM---EEPPSVLDVEVFDFDGPFDQATSLGHAEINFLK 625 (985)
Q Consensus 555 g~~DPyv~v~~--~~~~----~kT~~~~~tlnP~Wne~f~f~v~---~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~ 625 (985)
..+|-||.+.+ +++. ..|+.+.-+..+.|||...|++. -+....|.|+|||.+. -++...||.++++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~-~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG-TGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC-CCCceEEEEEEEeeEC
Confidence 35677777655 4443 35555555677899999999963 2345699999999886 2566799999999987
Q ss_pred cccCcccceEEEccccccCCcceeEEEEEeeecCCC
Q 001987 626 HTSTELADMWVSLEGKLAQSAQSKVHLRIFLENNNG 661 (985)
Q Consensus 626 l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~~ 661 (985)
-. + .-.+|...|.+|.....+
T Consensus 107 ~~-g--------------~Lr~G~~~l~lw~~~~~d 127 (159)
T cd08397 107 KD-G--------------TLRRGRQKLRVWPDVEAD 127 (159)
T ss_pred CC-C--------------cEecCCEEEEEEeCCCCC
Confidence 32 1 124677888887655544
No 262
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.41 E-value=0.22 Score=50.55 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=61.3
Q ss_pred CcEEEEEEEEeecCCC----CCcEEEEEE--CCeE----EeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLLA----KDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~~----~DPyv~v~l--~~~~----~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~d 69 (985)
...++|+|+.+.+|.. .+-||.+.+ +++. ..|+...-+..+.|||.+.|++. -+....|.|.||+..
T Consensus 7 ~~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 7 EEKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CCCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 5679999999999983 445666544 3332 45655554567999999999875 477789999999976
Q ss_pred CCCCC-----------CCCCCCeeEEEEEeCcccc
Q 001987 70 DDSGL-----------FGSSGELMGRVRVPVSSIA 93 (985)
Q Consensus 70 ~~~~~-----------~~~~d~~lG~~~i~L~~l~ 93 (985)
...+. .-+....||.+.++|-+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEccc
Confidence 21100 0012458888888776643
No 263
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=93.93 E-value=5.1 Score=40.09 Aligned_cols=148 Identities=10% Similarity=0.048 Sum_probs=97.9
Q ss_pred eeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEecc--------ccCCCceeeeeEEEEe
Q 001987 818 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNR--------HVSIFGGEVTCTQQKS 889 (985)
Q Consensus 818 ~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~--------~~~~~~~~~~~~q~~~ 889 (985)
...+|++++.++.+|.+..|.+...+..|..+..+..-..+..+ ....+.-.+.. .+-+..-.++.+++ .
T Consensus 4 ~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~-w 81 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG-VRVTVRQTVPADKLPSAARKFVGGDLRVTRTET-W 81 (159)
T ss_pred EEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe-EEEEEEEecChhhCCHHHHHhcCCCeEEEEEEE-E
Confidence 45789999999999999999999999998766666665433333 22222222211 11111123444433 3
Q ss_pred eccCCCcEEEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHH
Q 001987 890 PLASGEGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIE 969 (985)
Q Consensus 890 ~~~~~~~~vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~ 969 (985)
.-.++..+........+ |.-..+...+.++..+ ..|++.+...|.-. =-++=++||+-+...+.+.+..-.+
T Consensus 82 ~~~~~g~~~g~~~~~~~----G~P~~~~G~~~L~~~~---~gt~~~~~g~v~v~-VPlvGgkiE~~v~~~~~~~~~~e~~ 153 (159)
T PF10698_consen 82 TPLDDGRRTGTFTVSIP----GAPVSISGTMRLRPDG---GGTRLTVEGEVKVK-VPLVGGKIEKAVAENLRKLLEAEQE 153 (159)
T ss_pred ecCCCCeEEEEEEEEec----CceEEEEEEEEEecCC---CCEEEEEEEEEEEE-EccccHHHHHHHHHHHHHHHHHHHH
Confidence 33345566666666665 5557789999998843 58888877766532 3577899999999998888888777
Q ss_pred HHHHHH
Q 001987 970 LVEREI 975 (985)
Q Consensus 970 ~~~~~i 975 (985)
.+.+.|
T Consensus 154 ~~~~wl 159 (159)
T PF10698_consen 154 FTAEWL 159 (159)
T ss_pred HHHhhC
Confidence 776653
No 264
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=93.83 E-value=0.6 Score=41.28 Aligned_cols=90 Identities=12% Similarity=0.217 Sum_probs=63.9
Q ss_pred EEEEEEeecCCCCCcEEEEEECCe-EEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCCeeEEE
Q 001987 7 YVYVLQGQDLLAKDSYVKVQIGKH-KSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRV 85 (985)
Q Consensus 7 ~V~V~~Ar~L~~~DPyv~v~l~~~-~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~ 85 (985)
.|.++.+ ++-.+.+.+.+. .++|.-... .+..|++.|.+++ ...+.|.|.||-.| -..+-|-.
T Consensus 2 ~~~~~~~-----~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~L--dRsRELEI~VywrD--------~RslCav~ 65 (98)
T cd08687 2 EVRLMGC-----SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLEL--ERSRELEIAVYWRD--------WRSLCAVK 65 (98)
T ss_pred eeEEecc-----cceEEEEEEcCeEEeecccccc-ccccccceeEEEe--ecccEEEEEEEEec--------chhhhhhe
Confidence 4455554 577889999874 477766554 6899999999999 68899999999988 23566666
Q ss_pred EEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 86 RVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 86 ~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
.+.|.+...+ .-.+|+ +.|.+...+.|
T Consensus 66 ~lrLEd~~~~-------~~~~le----------pqg~l~~ev~f 92 (98)
T cd08687 66 FLKLEDERHE-------VQLDME----------PQLCLVAELTF 92 (98)
T ss_pred eeEhhhhccc-------ceeccc----------cccEEEEEEEe
Confidence 6777773221 123343 56888888877
No 265
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=93.24 E-value=0.41 Score=48.57 Aligned_cols=106 Identities=14% Similarity=0.173 Sum_probs=72.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEEE----Eeeecc----CCCCCeEeEEEEEEee---cCCCCEEEEE
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR----TSSVQL----QTCDPQWHDILEFDAM---EEPPSVLDVE 602 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~----~tlnP~Wne~f~f~v~---~~~~~~L~v~ 602 (985)
..+.|+|..+.+++........|-||.+.+ |++.. .|+... -...+.|||.++|++. -+....|.|+
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 367899999999998765556888888755 55543 443211 1236789999999862 2335699999
Q ss_pred EEecCCCCC---------CCCccceEEEEeeccccCcccceEEEccccccCCcceeEEEEEeee
Q 001987 603 VFDFDGPFD---------QATSLGHAEINFLKHTSTELADMWVSLEGKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 603 V~D~d~~~~---------~dd~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ls 657 (985)
||+... -. .+..||.+.++|-+... .-.+|...|.+|..
T Consensus 88 l~~~~~-~~~~~~~~~~~~~~~lG~~~~~LFd~~~---------------~L~~G~~~L~lW~~ 135 (171)
T cd04012 88 LYGTTS-SPDGGSNKQRMGPEELGWVSLPLFDFRG---------------VLRQGSLLLGLWPP 135 (171)
T ss_pred EEEEec-CCccccccccccceEEEEEeEeeEcchh---------------hhccCCEEEEeccC
Confidence 999775 23 34688888888876321 12467788888753
No 266
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.54 E-value=0.61 Score=46.52 Aligned_cols=88 Identities=18% Similarity=0.320 Sum_probs=60.6
Q ss_pred CcEEEEEEEEeecCC-----CCCcEEEEEE--CCeE----EeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL-----AKDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~-----~~DPyv~v~l--~~~~----~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~ 68 (985)
+..++|++..+.++. ..+-||.+.+ +++. ..|.......++.|||...|++. -+....|.|.||+.
T Consensus 7 ~~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 7 NFNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 457888888888875 3445666554 3331 34444333468999999999965 46778999999998
Q ss_pred CCCCCCCCCCCCeeEEEEEeCcccc
Q 001987 69 NDDSGLFGSSGELMGRVRVPVSSIA 93 (985)
Q Consensus 69 d~~~~~~~~~d~~lG~~~i~L~~l~ 93 (985)
+... ...+..||.+.++|-+..
T Consensus 87 ~~~~---~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPG---SKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCC---CCcceEEEEEeEEeEccc
Confidence 8210 014679999999987754
No 267
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=91.67 E-value=3.8 Score=40.00 Aligned_cols=118 Identities=21% Similarity=0.343 Sum_probs=77.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEE---EEeee-ccCCCCCeEeEEEEEEeec---C-----CCCEEEEEE
Q 001987 536 WVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKT---RTSSV-QLQTCDPQWHDILEFDAME---E-----PPSVLDVEV 603 (985)
Q Consensus 536 g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~-~~~tlnP~Wne~f~f~v~~---~-----~~~~L~v~V 603 (985)
..+.|.+.+..+++. ...--||+...++.. .+|.. ....-.-.|||.|.+.+.- . ....+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 467889999999887 234455666666443 34443 3455677999999998732 1 234799999
Q ss_pred EecCCCCCCCCccceEEEEeeccccC--cccceEEEccccccCCcceeEEEEEeeecCC
Q 001987 604 FDFDGPFDQATSLGHAEINFLKHTST--ELADMWVSLEGKLAQSAQSKVHLRIFLENNN 660 (985)
Q Consensus 604 ~D~d~~~~~dd~lG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~g~l~l~~~ls~~~ 660 (985)
+..+. -++...+|.+.|+|.+.... .....-++|... ......|++.+.+....
T Consensus 83 ~~~~~-~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 83 FEVDG-SGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--KKSNATLSISISLSELR 138 (143)
T ss_pred EEecC-CCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--CCCCcEEEEEEEEEECc
Confidence 98753 13335899999999997664 345556777764 23445677777654433
No 268
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=91.52 E-value=0.33 Score=51.99 Aligned_cols=110 Identities=18% Similarity=0.256 Sum_probs=74.0
Q ss_pred CCcEEEEEEEEeecCC--------CCCcEEEEEECC-eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCC
Q 001987 2 VSTRLYVYVLQGQDLL--------AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDS 72 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~--------~~DPyv~v~l~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~ 72 (985)
+++.|.++++.+|+|. +-+-||++.... ++.||.+.....-=.|.|+|..++ .....+.+-||.|+++
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dv--v~~~vl~~lvySW~pq- 125 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDV--VNIEVLHYLVYSWPPQ- 125 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeec--ccceeeeEEEeecCch-
Confidence 4689999999999998 568899998874 457787777777778999999887 5677888999999943
Q ss_pred CCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEE
Q 001987 73 GLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLN 130 (985)
Q Consensus 73 ~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~ 130 (985)
.++.+.-.-.+.+..++... ...-+.|. -.++|++.|.+.+.
T Consensus 126 ----~RHKLC~~g~l~~~~v~rqs----pd~~~Al~--------lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 126 ----RRHKLCHLGLLEAFVVDRQS----PDRVVALY--------LEPRGQPPLRLPLA 167 (442)
T ss_pred ----hhccccccchhhhhhhhhcC----Ccceeeee--------cccCCCCceecccC
Confidence 24443222233334443321 11113333 34678888887764
No 269
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=90.43 E-value=1.9 Score=42.25 Aligned_cols=76 Identities=16% Similarity=0.310 Sum_probs=50.0
Q ss_pred EeeeccCC-CCCeEeEEEEEEee--c-CCCCEEEEEEEecCCCCCCC----CccceEEEEeeccccCcccceEEEccccc
Q 001987 571 TSSVQLQT-CDPQWHDILEFDAM--E-EPPSVLDVEVFDFDGPFDQA----TSLGHAEINFLKHTSTELADMWVSLEGKL 642 (985)
Q Consensus 571 kT~~~~~t-lnP~Wne~f~f~v~--~-~~~~~L~v~V~D~d~~~~~d----d~lG~~~i~l~~l~~~~~~~~w~~L~~~~ 642 (985)
.|+...-+ .+|.|||.++|.+. . +....|.|+||+.+. -... ..||.+.++|-+...
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~-~~~~~~~~~~lgw~n~~lFd~~~-------------- 87 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS-KKKSKKKKVPLGWVNLPLFDYRG-------------- 87 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC-STTT--EEEEEEEEEEESB-TTS--------------
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC-CCccccceeEEEEEEEEeECCCC--------------
Confidence 55555555 89999999999962 2 446699999999886 2333 589999999877422
Q ss_pred cCCcceeEEEEEeeecCCCc
Q 001987 643 AQSAQSKVHLRIFLENNNGV 662 (985)
Q Consensus 643 ~~~~~g~l~l~~~ls~~~~~ 662 (985)
.-.+|...|.+|.....+.
T Consensus 88 -~L~~G~~~L~lW~~~~~~~ 106 (142)
T PF00792_consen 88 -QLRQGPQKLSLWPDEEPDP 106 (142)
T ss_dssp -BBEEEEEEEE-EET-TTSS
T ss_pred -cccCCCEEEEEEcCCCCcc
Confidence 1246788888876555443
No 270
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=90.23 E-value=1.3 Score=44.94 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=62.7
Q ss_pred CCcEEEEEEEEeecCC------CCCcEEEEEE--CCeE----EeecCcc--C--CCCCeEeeEEEEEEe---cCCCceEE
Q 001987 2 VSTRLYVYVLQGQDLL------AKDSYVKVQI--GKHK----SKSRILK--N--NSNPVWNEEFVFRVH---NIDDEELV 62 (985)
Q Consensus 2 ~~~~L~V~V~~Ar~L~------~~DPyv~v~l--~~~~----~kT~v~~--~--t~nP~wnE~f~f~v~---~~~~~~L~ 62 (985)
++..+.|+|..+.+++ ..|-||.+.+ +++. ..|+... + ...+.|||.+.|++. -+....|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 4678999999999999 3778888866 3332 3443221 1 235789999999975 46778999
Q ss_pred EEEEecCCCCCC----CCCCCCeeEEEEEeCcccc
Q 001987 63 VSVFQHNDDSGL----FGSSGELMGRVRVPVSSIA 93 (985)
Q Consensus 63 ~~V~D~d~~~~~----~~~~d~~lG~~~i~L~~l~ 93 (985)
|.||+......- .-..+..||.+.++|-+..
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~ 120 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR 120 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcch
Confidence 999997721000 0003468999999877643
No 271
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=89.95 E-value=1 Score=45.09 Aligned_cols=70 Identities=13% Similarity=0.247 Sum_probs=52.7
Q ss_pred CCCcEEEEEEC--CeE----EeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEe
Q 001987 18 AKDSYVKVQIG--KHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVP 88 (985)
Q Consensus 18 ~~DPyv~v~l~--~~~----~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~ 88 (985)
.+|-||.+++- ++. .+|+.+.-+..+.|||...|+|. -+....|.|+|||.+ . .++...+|.+.++
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~---~--~~~~~~vg~~~~~ 103 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVS---G--TGKAVPFGGTTLS 103 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEec---C--CCCceEEEEEEEe
Confidence 57788888773 322 35655555677899999999975 467789999999988 2 3456799999998
Q ss_pred Cccc
Q 001987 89 VSSI 92 (985)
Q Consensus 89 L~~l 92 (985)
|-+-
T Consensus 104 lFd~ 107 (159)
T cd08397 104 LFNK 107 (159)
T ss_pred eECC
Confidence 7764
No 272
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.92 E-value=2.5 Score=43.01 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=43.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEE---EEeeeccCCCCCeEeEEEEEEee--c-CCCCEEEEEEEecC
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTC--NGKT---RTSSVQLQTCDPQWHDILEFDAM--E-EPPSVLDVEVFDFD 607 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~---~kT~~~~~tlnP~Wne~f~f~v~--~-~~~~~L~v~V~D~d 607 (985)
.++|+|..+.++ ..+.....--||.+.+ |++. .+|+...-+.+|.|||.++|++. + +....|.|+||+..
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 467888887633 3222222234444433 4443 25666666778999999999862 2 34569999999974
No 273
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=89.69 E-value=14 Score=35.48 Aligned_cols=138 Identities=12% Similarity=0.130 Sum_probs=75.2
Q ss_pred eeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEEEeeccCCCcE
Q 001987 818 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEGW 897 (985)
Q Consensus 818 ~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 897 (985)
+..++++++++++++.|-.-..++.- ++.++. + ..++.. .+..+. .++|.....+..-+.......+.+
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p--~~~~~~---~--~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 74 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIP--GCESLE---K--IGPNEY--EATVKL--KVGPVKGTFKGKVELSDLDPPESY 74 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhcc--chhhcc---c--cCCCeE--EEEEEE--EEccEEEEEEEEEEEEecCCCcEE
Confidence 45789999999999866543322221 111111 1 111211 122221 124433233211111122233445
Q ss_pred EEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHHHHH
Q 001987 898 IVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 975 (985)
Q Consensus 898 vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~~~i 975 (985)
++..... +-+..+....+|.|++. . ++|+|...+.+.+.. .++.+...-.....++...++++.|++.+
T Consensus 75 ~~~~~~~----~~~~~~~~~~~~~l~~~-~--~gT~v~~~~~~~~~g--~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 75 TITGEGK----GGAGFVKGTARVTLEPD-G--GGTRLTYTADAQVGG--KLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEEEc----CCCceEEEEEEEEEEec-C--CcEEEEEEEEEEEcc--ChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5553322 22556789999999987 5 589999888888764 45666655555566677777777777664
No 274
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=88.86 E-value=4.2 Score=36.16 Aligned_cols=84 Identities=11% Similarity=0.156 Sum_probs=59.6
Q ss_pred CCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCccceEEEEeeccccCcccce
Q 001987 556 LSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADM 634 (985)
Q Consensus 556 ~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~ 634 (985)
-++-.+++.+++. ...|.... ..+..|++.|.|++ +....|+|.||-+|. ..+.|-..+-|++. .+..
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~L--dRsRELEI~VywrD~----RslCav~~lrLEd~----~~~~ 76 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLEL--ERSRELEIAVYWRDW----RSLCAVKFLKLEDE----RHEV 76 (98)
T ss_pred ccceEEEEEEcCeEEeeccccc-cccccccceeEEEe--ecccEEEEEEEEecc----hhhhhheeeEhhhh----cccc
Confidence 3677888998864 45666543 36889999999984 556799999998885 24678788888873 2334
Q ss_pred EEEccccccCCcceeEEEEEee
Q 001987 635 WVSLEGKLAQSAQSKVHLRIFL 656 (985)
Q Consensus 635 w~~L~~~~~~~~~g~l~l~~~l 656 (985)
-++|. .+|.+...+++
T Consensus 77 ~~~le------pqg~l~~ev~f 92 (98)
T cd08687 77 QLDME------PQLCLVAELTF 92 (98)
T ss_pred eeccc------cccEEEEEEEe
Confidence 45555 46777777655
No 275
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=88.85 E-value=12 Score=38.50 Aligned_cols=143 Identities=8% Similarity=-0.024 Sum_probs=79.2
Q ss_pred eeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCcee-eeeEEEEeeccCCCc
Q 001987 818 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGE-VTCTQQKSPLASGEG 896 (985)
Q Consensus 818 ~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~-~~~~q~~~~~~~~~~ 896 (985)
..+++++++++++++.+-+...++... +.+...-. ..+.. ..+.|..-++..|.+.+ .+-........++..
T Consensus 46 ~~~i~~s~e~v~~vi~d~e~~~~w~~~--~~~~~vie----~~~~~-~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~ 118 (195)
T cd08876 46 VAEVDASIEAFLALLRDTESYPQWMPN--CKESRVLK----RTDDN-ERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS 118 (195)
T ss_pred EEEEeCCHHHHHHHHhhhHhHHHHHhh--cceEEEee----cCCCC-cEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence 446889999999988766655555553 23333211 11111 34555542333333222 222212222222344
Q ss_pred EEEEEEEeeCCCCCC-C---eEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHH
Q 001987 897 WIVNEVMSLHDVPFD-D---HFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVE 972 (985)
Q Consensus 897 ~vv~~~~~~~dVPyg-d---~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~ 972 (985)
++|......+++|-. + -+.....|.|++.++ ++|+|.....+.+.+ .+-+.+|..-+... ...+++.|+
T Consensus 119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~--~~t~vt~~~~~dp~g-~iP~~lv~~~~~~~----~~~~l~~l~ 191 (195)
T cd08876 119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGN--GKTRVTYQAYADPGG-SIPGWLANAFAKDA----PYNTLENLR 191 (195)
T ss_pred EEEEeecCCccCCCCCCeEEceeceeeEEEEECCC--CeEEEEEEEEeCCCC-CCCHHHHHHHHHHH----HHHHHHHHH
Confidence 555444333445643 2 245667799999887 899999999999964 46677777666544 444555555
Q ss_pred HH
Q 001987 973 RE 974 (985)
Q Consensus 973 ~~ 974 (985)
+.
T Consensus 192 ~~ 193 (195)
T cd08876 192 KQ 193 (195)
T ss_pred Hh
Confidence 44
No 276
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=88.26 E-value=11 Score=36.68 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=75.4
Q ss_pred EEEEEEEEeecCCCCCcEEEEEE--CCe---EEeecCcc-CCCCCeEeeEEEEEEe---c-----CCCceEEEEEEecCC
Q 001987 5 RLYVYVLQGQDLLAKDSYVKVQI--GKH---KSKSRILK-NNSNPVWNEEFVFRVH---N-----IDDEELVVSVFQHND 70 (985)
Q Consensus 5 ~L~V~V~~Ar~L~~~DPyv~v~l--~~~---~~kT~v~~-~t~nP~wnE~f~f~v~---~-----~~~~~L~~~V~D~d~ 70 (985)
.+.++|.+..+++..+..+.|.+ ++. ...|.... .+-.-.|||+|.+.+. + .....+.|.|+...+
T Consensus 8 ~~~l~i~~l~~~p~~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~ 87 (143)
T PF10358_consen 8 QFDLTIHELENLPSSNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDG 87 (143)
T ss_pred EEEEEEEEeECcCCCCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecC
Confidence 57899999999985555555555 333 23444333 2456799999999864 1 344678899998851
Q ss_pred CCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 71 DSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 71 ~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
.++...+|.+.++|++...... .....-++|.+. ......|.|++.+.+.
T Consensus 88 -----~~~k~~lG~~~inLaey~~~~~-~~~~~~~~l~~~------~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 88 -----SGKKKVLGKVSINLAEYANEDE-EPITVRLLLKKC------KKSNATLSISISLSEL 137 (143)
T ss_pred -----CCccceEEEEEEEHHHhhCcCC-CcEEEEEeCccC------CCCCcEEEEEEEEEEC
Confidence 1233699999999999986521 123344666522 2345788888887654
No 277
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=85.85 E-value=26 Score=37.06 Aligned_cols=148 Identities=10% Similarity=0.024 Sum_probs=85.7
Q ss_pred ee-cCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEe-ccccCCCceeeeeEEEEeeccCCCcE
Q 001987 820 EL-PISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF-NRHVSIFGGEVTCTQQKSPLASGEGW 897 (985)
Q Consensus 820 ~~-p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~-~~~~~~~~~~~~~~q~~~~~~~~~~~ 897 (985)
++ .++++.+++++.+..+............ .+.... .+ . .+.|.. +.| .|.+.+=-...+.....++..+
T Consensus 54 ~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~-~ie~~d---~~--~-~i~y~~~~~P-~pvs~RDfV~~r~~~~~~~~~v 125 (222)
T cd08871 54 IFPDVPAETLYDVLHDPEYRKTWDSNMIESF-DICQLN---PN--N-DIGYYSAKCP-KPLKNRDFVNLRSWLEFGGEYI 125 (222)
T ss_pred EeCCCCHHHHHHHHHChhhhhhhhhhhceeE-EEEEcC---CC--C-EEEEEEeECC-CCCCCCeEEEEEEEEeCCCEEE
Confidence 45 4899999998755554444333321111 122221 11 2 344443 333 3443332222222223335556
Q ss_pred EEEEEEeeCCCCCCCe-EEEE---EEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHHH
Q 001987 898 IVNEVMSLHDVPFDDH-FRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVER 973 (985)
Q Consensus 898 vv~~~~~~~dVPygd~-F~v~---~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~~ 973 (985)
++..++..+++|-..- -+++ ..|.|++.++ ++|++.....+...++ +=+.+|.+-+.+..-..++.|-+++.+
T Consensus 126 i~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~--~~t~vt~~~~~Dp~G~-IP~~lvN~~~~~~~~~~l~~l~k~~~~ 202 (222)
T cd08871 126 IFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGP--KGCTLTYVTQNDPKGS-LPKWVVNKATTKLAPKVMKKLHKAALK 202 (222)
T ss_pred EEeccccCCCCCCCCCeEEeEEEccEEEEEECCC--CCEEEEEEEecCCCCC-cCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7778888888986553 4444 4688988876 8899999999998884 335556666666566777777777777
Q ss_pred HHhhc
Q 001987 974 EILFA 978 (985)
Q Consensus 974 ~i~~~ 978 (985)
|-+=.
T Consensus 203 y~~~~ 207 (222)
T cd08871 203 YPEWK 207 (222)
T ss_pred HHHHH
Confidence 65433
No 278
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=85.09 E-value=3.9 Score=41.63 Aligned_cols=67 Identities=15% Similarity=0.248 Sum_probs=46.9
Q ss_pred CcEEEEEEEEeecCC---CCCc--EEEEEE--CCeE---EeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEecC
Q 001987 3 STRLYVYVLQGQDLL---AKDS--YVKVQI--GKHK---SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHN 69 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~---~~DP--yv~v~l--~~~~---~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~d 69 (985)
+..++|+|..+.++. ..++ ||.+.+ +++. .+|+...-+.+|.|||.+.|+|. -+....|.|.||+..
T Consensus 9 ~~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 9 DRKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 567889999987543 3334 444433 3332 35666666778999999999965 467789999999975
No 279
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=85.01 E-value=13 Score=38.80 Aligned_cols=146 Identities=8% Similarity=-0.012 Sum_probs=77.3
Q ss_pred eeeecCChHHHHh-ccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEecccc--CCCceeeeeEEEEeeccCC
Q 001987 818 NAELPISVKALME-MFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHV--SIFGGEVTCTQQKSPLASG 894 (985)
Q Consensus 818 ~~~~p~~~~~~~~-lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~--~~~~~~~~~~q~~~~~~~~ 894 (985)
..+++++++++|. ++.+.+...+...... +.. . -+..+..++ +.|...+|. .|.+.+=.+..+.....++
T Consensus 53 ~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~--~~~---~-i~~~d~~~~-i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~ 125 (208)
T cd08868 53 TGVLDCPAEFLYNELVLNVESLPSWNPTVL--ECK---I-IQVIDDNTD-ISYQVAAEAGGGLVSPRDFVSLRHWGIREN 125 (208)
T ss_pred EEEEcCCHHHHHHHHHcCccccceecCccc--ceE---E-EEEecCCcE-EEEEEecCcCCCcccccceEEEEEEEecCC
Confidence 5588999999987 6655432222211111 111 0 011112233 445543332 3333343333344434444
Q ss_pred CcEEEEEEEeeCCCCCC-CeEEEE---EEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHH
Q 001987 895 EGWIVNEVMSLHDVPFD-DHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIEL 970 (985)
Q Consensus 895 ~~~vv~~~~~~~dVPyg-d~F~v~---~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~ 970 (985)
..+++..++.-+..|-. ++-+++ ..|.|++.++++++|++.....+...+| .=+..|.+.+.++.-+.++.+-+.
T Consensus 126 ~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~lvN~~~~~~~~~~~~~Lr~~ 204 (208)
T cd08868 126 CYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQYLVDQALASVLLDFMKHLRKR 204 (208)
T ss_pred eEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-CcceeeehhhHHHHHHHHHHHHHH
Confidence 44555566655666644 445554 7899999877668899998888888764 223345555555555555544443
Q ss_pred H
Q 001987 971 V 971 (985)
Q Consensus 971 ~ 971 (985)
+
T Consensus 205 ~ 205 (208)
T cd08868 205 I 205 (208)
T ss_pred H
Confidence 3
No 280
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=84.88 E-value=5 Score=39.30 Aligned_cols=57 Identities=16% Similarity=0.339 Sum_probs=41.6
Q ss_pred EeecCccCC-CCCeEeeEEEEEEe---cCCCceEEEEEEecCCCCCCCCCCC----CeeEEEEEeCcccc
Q 001987 32 SKSRILKNN-SNPVWNEEFVFRVH---NIDDEELVVSVFQHNDDSGLFGSSG----ELMGRVRVPVSSIA 93 (985)
Q Consensus 32 ~kT~v~~~t-~nP~wnE~f~f~v~---~~~~~~L~~~V~D~d~~~~~~~~~d----~~lG~~~i~L~~l~ 93 (985)
..|....-+ .+|.|||.+.|++. -+....|.|.||..+ . .... ..||.+.++|-+..
T Consensus 22 ~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~---~--~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 22 QSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVD---S--KKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp EE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEE---C--STTT--EEEEEEEEEEESB-TT
T ss_pred eeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEec---C--CCccccceeEEEEEEEEeECCC
Confidence 356666555 79999999999986 477899999999988 2 2233 69999999987764
No 281
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=84.49 E-value=30 Score=36.27 Aligned_cols=150 Identities=8% Similarity=-0.042 Sum_probs=93.8
Q ss_pred eeee-cCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEE-EeeccCCC
Q 001987 818 NAEL-PISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQ-KSPLASGE 895 (985)
Q Consensus 818 ~~~~-p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~-~~~~~~~~ 895 (985)
..++ .++++.|++++.|.++..+.....- +...=. .... ...+.+.|....|. |..-+=-..++ .+...++.
T Consensus 55 ~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~--~~~~le--~~~~-~~~~i~y~~~~~P~-P~s~RD~V~~r~~~~~~~~~ 128 (209)
T cd08870 55 RGVFEDCTPELLRDFYWDDEYRKKWDETVI--EHETLE--EDEK-SGTEIVRWVKKFPF-PLSDREYVIARRLWESDDRS 128 (209)
T ss_pred EEEEcCCCHHHHHHHHcChhhHhhhhhhee--eEEEEE--ecCC-CCcEEEEEEEECCC-cCCCceEEEEEEEEEcCCCE
Confidence 3356 5799999998877776665555432 222111 1111 02344444444553 44333222322 23333566
Q ss_pred cEEEEEEEeeCCCCCCCeEEEE---EEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHH
Q 001987 896 GWIVNEVMSLHDVPFDDHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVE 972 (985)
Q Consensus 896 ~~vv~~~~~~~dVPygd~F~v~---~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~ 972 (985)
.+++..++.-+.+|-.++-+|+ .+|.|++.+.++++|++.+.+..+- +..+=+.++...+..|.-..++.|-++++
T Consensus 129 ~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 129 YVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPRELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred EEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 6666677777789986566554 6789988732337888888887775 44566889999999999999999988887
Q ss_pred HH
Q 001987 973 RE 974 (985)
Q Consensus 973 ~~ 974 (985)
+|
T Consensus 208 ~Y 209 (209)
T cd08870 208 KY 209 (209)
T ss_pred cC
Confidence 64
No 282
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=84.26 E-value=1.9 Score=46.34 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=59.5
Q ss_pred CCCeEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCE-EEEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCC
Q 001987 533 GDGWVLTVALVEGVNLASSEM--TGLSDPYVVFTCNGK-TRTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGP 609 (985)
Q Consensus 533 ~~~g~L~V~v~~a~~L~~~d~--~g~~DPyv~v~~~~~-~~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~ 609 (985)
+-.|.|.+++.++++|.-... +-.-+-||++.++.+ +-+|.+.....-=.|.|.|+.++.. ...+.+-||.|+..
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVYSWPPQ 125 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc--ceeeeEEEeecCch
Confidence 456899999999999976443 446789999998765 3456665555666788999988643 36889999999973
Q ss_pred CCCCCcc
Q 001987 610 FDQATSL 616 (985)
Q Consensus 610 ~~~dd~l 616 (985)
.++.+.
T Consensus 126 -~RHKLC 131 (442)
T KOG1452|consen 126 -RRHKLC 131 (442)
T ss_pred -hhcccc
Confidence 455543
No 283
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=84.04 E-value=5.2 Score=36.63 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=46.1
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEE--CCEEE----EeeeccCCCCCeEeEEEEEEee---cCCCCEEEEEEEecCC
Q 001987 538 LTVALVEGVNLASSEMTGLSDPYVVFTC--NGKTR----TSSVQLQTCDPQWHDILEFDAM---EEPPSVLDVEVFDFDG 608 (985)
Q Consensus 538 L~V~v~~a~~L~~~d~~g~~DPyv~v~~--~~~~~----kT~~~~~tlnP~Wne~f~f~v~---~~~~~~L~v~V~D~d~ 608 (985)
+.+.+..+.+.........+|-||.+.+ |++.. .|+.+.-...+.|||..+|++. -+....|.|+||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 4556666666655443333588888755 55533 4554554566999999999852 2345699999998653
No 284
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=83.15 E-value=26 Score=33.16 Aligned_cols=131 Identities=7% Similarity=-0.000 Sum_probs=62.3
Q ss_pred EeeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCC-CCceeEEEEEEeccccCCCceeeeeEEEEeeccCC-
Q 001987 817 YNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVK-PGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASG- 894 (985)
Q Consensus 817 ~~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~-~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~~~- 894 (985)
.+.+++++++.+|+++.+-.-...++.. +..+. +.... ..+..|.+.+. .+ .... +......+.
T Consensus 5 ~~~~i~a~~~~V~~~l~d~~~~~~w~~~--~~~~~---~~~~~~~~g~~~~~~~~----~g---~~~~--~~i~~~~~~~ 70 (140)
T cd07821 5 VSVTIDAPADKVWALLSDFGGLHKWHPA--VASCE---LEGGGPGVGAVRTVTLK----DG---GTVR--ERLLALDDAE 70 (140)
T ss_pred EEEEECCCHHHHHHHHhCcCchhhhccC--cceEE---eecCCCCCCeEEEEEeC----CC---CEEE--EEehhcCccC
Confidence 4568899999999988443322233321 22222 22111 13445555543 12 1121 122222233
Q ss_pred CcEEEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHH
Q 001987 895 EGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIE 969 (985)
Q Consensus 895 ~~~vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~ 969 (985)
+.+.+...-. +-|+.+ ....|.++..++ ++|+|.......-... +.-..+.+....++++.++.|-+
T Consensus 71 ~~i~~~~~~~--~~~~~~---~~~~~~~~~~~~--~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~ 137 (140)
T cd07821 71 RRYSYRIVEG--PLPVKN---YVATIRVTPEGD--GGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKA 137 (140)
T ss_pred CEEEEEecCC--CCCccc---ceEEEEEEECCC--CccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHH
Confidence 4444432211 345443 578899998877 6787665554443332 33334444444444444444433
No 285
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=82.52 E-value=37 Score=34.34 Aligned_cols=131 Identities=13% Similarity=0.072 Sum_probs=71.1
Q ss_pred EeeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEEEeeccCCCc
Q 001987 817 YNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEG 896 (985)
Q Consensus 817 ~~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~~~~~ 896 (985)
...++++++++++++|.+..+...+.. .+.+..+=.. ...+.......|....|+++.. -+. ........++..
T Consensus 43 ~~~~i~~~~~~v~~~l~d~~~~~~w~~--~~~~~~vl~~--~~~~~~i~~~~~~~p~p~~~Rd-fv~-~~~~~~~~~~~~ 116 (193)
T cd00177 43 AEGVIPASPEQVFELLMDIDLRKKWDK--NFEEFEVIEE--IDEHTDIIYYKTKPPWPVSPRD-FVY-LRRRRKLDDGTY 116 (193)
T ss_pred EEEEECCCHHHHHHHHhCCchhhchhh--cceEEEEEEE--eCCCeEEEEEEeeCCCccCCcc-EEE-EEEEEEcCCCeE
Confidence 456889999999997754443333221 1112221111 1112221222222122333322 121 112222335667
Q ss_pred EEEEEEEeeCCCCCC-CeEEEEEE---EEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhch
Q 001987 897 WIVNEVMSLHDVPFD-DHFRVHFR---YEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNI 956 (985)
Q Consensus 897 ~vv~~~~~~~dVPyg-d~F~v~~r---y~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~ 956 (985)
+++..++..+++|-. ++-+.++. |+|++.++ ++|++.....++..++. -+..+.+.+
T Consensus 117 ~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~--~~~~vt~~~~~D~~g~i-P~~~~~~~~ 177 (193)
T cd00177 117 VIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDP--GKTKVTYVLQVDPKGSI-PKSLVNSAA 177 (193)
T ss_pred EEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCC--CCEEEEEEEeeCCCCCc-cHHHHHhhh
Confidence 777777776667765 77777765 88998866 89999999999988753 244444444
No 286
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=81.93 E-value=4.9 Score=41.27 Aligned_cols=58 Identities=16% Similarity=0.298 Sum_probs=34.9
Q ss_pred EeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCcc
Q 001987 32 SKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSS 91 (985)
Q Consensus 32 ~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~ 91 (985)
..|.+...+.+|.|+|+|.+.++ ......|.|++++...+.. ..+...+|-+.+||-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~--~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKES--KEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSS--S-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccc--cCccceeEEEEEEeee
Confidence 67778888899999999999998 3456789999999873211 0112689999999887
No 287
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=81.06 E-value=7.2 Score=35.67 Aligned_cols=65 Identities=17% Similarity=0.311 Sum_probs=46.7
Q ss_pred EEEEEEEEeecCC------CCCcEEEEEE--CCeE----EeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEecC
Q 001987 5 RLYVYVLQGQDLL------AKDSYVKVQI--GKHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQHN 69 (985)
Q Consensus 5 ~L~V~V~~Ar~L~------~~DPyv~v~l--~~~~----~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~d 69 (985)
.+.+++..+.++. .++-||.+.+ +++. ..|..+.-...+.|||...|++. -+....|.|.||+..
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4667777777777 2377888866 3332 35555544566999999999865 467789999999976
No 288
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=79.41 E-value=52 Score=34.01 Aligned_cols=147 Identities=10% Similarity=-0.018 Sum_probs=79.7
Q ss_pred eeeecCChHH-HHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEE-EEeeccCCC
Q 001987 818 NAELPISVKA-LMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQ-QKSPLASGE 895 (985)
Q Consensus 818 ~~~~p~~~~~-~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q-~~~~~~~~~ 895 (985)
..+++.++.+ +..++.+-..............+ ++.. +.+ .+.+.|..+.|.+|.+.+=.... +.....++.
T Consensus 50 ~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~-ie~~---~~~--~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~ 123 (206)
T smart00234 50 VGVVPMVCADLVEELMDDLRYRPEWDKNVAKAET-LEVI---DNG--TVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGS 123 (206)
T ss_pred EEEEecChHHHHHHHHhcccchhhCchhcccEEE-EEEE---CCC--CeEEEEEEecccCcCCCCeEEEEEEEEEcCCCc
Confidence 4466777776 44577555443333333221111 1111 112 23232333334334433322221 222233444
Q ss_pred cEEEEEEEeeCCCC-CCCeEEE---EEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHH
Q 001987 896 GWIVNEVMSLHDVP-FDDHFRV---HFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELV 971 (985)
Q Consensus 896 ~~vv~~~~~~~dVP-ygd~F~v---~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~ 971 (985)
.+++..++..+.+| -.++.++ ...|+|++.++ +.|++.....++..++ +=+..+..-+.++.-+.++.+...+
T Consensus 124 ~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~--~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~~~~~~ 200 (206)
T smart00234 124 YAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGN--GPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKTWVATL 200 (206)
T ss_pred EEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCC--CCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHHHHHHH
Confidence 44555577777777 4556554 56899999888 6799999999999886 3366666666666666666665555
Q ss_pred HH
Q 001987 972 ER 973 (985)
Q Consensus 972 ~~ 973 (985)
++
T Consensus 201 ~~ 202 (206)
T smart00234 201 QK 202 (206)
T ss_pred HH
Confidence 44
No 289
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=78.38 E-value=55 Score=34.21 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=50.6
Q ss_pred CCCcEEE-EEEEeeCCC-CCCCeEEEEE---EEEEEecCCCCCccEEEEEEEEEEEeeeee-hhhhhhchHHHHHHHHHH
Q 001987 893 SGEGWIV-NEVMSLHDV-PFDDHFRVHF---RYEIEKSPLAHNACKCAIYIGISWLKSTKF-QQRITQNITEKFTHRLKE 966 (985)
Q Consensus 893 ~~~~~vv-~~~~~~~dV-Pygd~F~v~~---ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~-K~~Ie~~~~~g~~~~~~~ 966 (985)
++..|++ ..++.-|-. |=-++.+-+. =|.|.++++++++|+|....++..+ .|+ |+.|++.--+.+-+.+..
T Consensus 121 ~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~Dlk--G~lP~~vv~~~~~~~~~~f~~~ 198 (204)
T cd08904 121 EGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELR--GNLSRSVIEKTMPTNLVNLILD 198 (204)
T ss_pred CCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCC--CCCCHHHHHHHhHHHHHHHHHH
Confidence 4455555 444444443 4456666554 5889999998889999999998776 344 888887776666665555
Q ss_pred HHHH
Q 001987 967 MIEL 970 (985)
Q Consensus 967 ~~~~ 970 (985)
+-+.
T Consensus 199 ~~~~ 202 (204)
T cd08904 199 AKDG 202 (204)
T ss_pred HHHh
Confidence 5433
No 290
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=77.49 E-value=25 Score=38.65 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=76.7
Q ss_pred EEEEEEEeecCC-CCCcEEEEEECCeEEeecCccCCCCCeEe--eEEEEEEecCCCceEEEEEEecCCCCCCCCCCCCee
Q 001987 6 LYVYVLQGQDLL-AKDSYVKVQIGKHKSKSRILKNNSNPVWN--EEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELM 82 (985)
Q Consensus 6 L~V~V~~Ar~L~-~~DPyv~v~l~~~~~kT~v~~~t~nP~wn--E~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~~l 82 (985)
|.|.+.+-.++. ...-|+.+..+....+|..+.-+..-.-+ |.....+ ..-+.+|++.||-.. +-+..-|
T Consensus 60 LLVeI~EI~~i~k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkI-RQcDnTLkI~lfKKk------Lvkk~hI 132 (508)
T PTZ00447 60 LLVKINEIFNINKYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKI-RQCDETLRVDLFTTK------LTKKVHI 132 (508)
T ss_pred EEEEehhhhccccceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeee-eecCceEEEEEEecc------ccceeEE
Confidence 556666666666 66789999999888888655443333333 4444444 567789999999877 5578899
Q ss_pred EEEEEeCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEe
Q 001987 83 GRVRVPVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNG 131 (985)
Q Consensus 83 G~~~i~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~ 131 (985)
|.+.+.+..=.-. ..-+..+||.+.+. +...++|.||+.=..
T Consensus 133 gdI~InIn~dIId-k~FPKnkWy~c~kD------Gq~~cRIqLSFhKL~ 174 (508)
T PTZ00447 133 GQIKIDINASVIS-KSFPKNEWFVCFKD------GQEICKVQMSFYKIQ 174 (508)
T ss_pred EEEEecccHHHHh-ccCCccceEEEecC------CceeeeEEEEehhhh
Confidence 9999987652222 22578899999722 456789999886543
No 291
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=76.72 E-value=9.9 Score=39.00 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=33.0
Q ss_pred EEEEeeeccCCCCCeEeEEEEEEeecCC--CCEEEEEEEecCCCCCCC--CccceEEEEeec
Q 001987 568 KTRTSSVQLQTCDPQWHDILEFDAMEEP--PSVLDVEVFDFDGPFDQA--TSLGHAEINFLK 625 (985)
Q Consensus 568 ~~~kT~~~~~tlnP~Wne~f~f~v~~~~--~~~L~v~V~D~d~~~~~d--d~lG~~~i~l~~ 625 (985)
..+.|.+..++.+|.|+|+|.+.+..+. ...|.|++++....-+++ ..+|-+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3567888889999999999999964333 458999999976421111 477777777776
No 292
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=76.57 E-value=64 Score=33.82 Aligned_cols=81 Identities=7% Similarity=-0.025 Sum_probs=54.9
Q ss_pred ccCCCcEEEEEEEeeCCCC-CCCeEEEE---EEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHH
Q 001987 891 LASGEGWIVNEVMSLHDVP-FDDHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKE 966 (985)
Q Consensus 891 ~~~~~~~vv~~~~~~~dVP-ygd~F~v~---~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~ 966 (985)
..++.++++..++.-+..| --++-+++ ..|.|+++++++++|++.-...+...++ +=+..+.+...+..-+.+..
T Consensus 123 ~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~~lvN~~~~~~~~~~~~~ 201 (209)
T cd08905 123 RRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPKSIINQVLSQTQVDFANH 201 (209)
T ss_pred EcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCHHHHHHHhHHhHHHHHHH
Confidence 3344455555555555544 45666554 6799999877678999998888888776 44777777777777776666
Q ss_pred HHHHHH
Q 001987 967 MIELVE 972 (985)
Q Consensus 967 ~~~~~~ 972 (985)
|-..+.
T Consensus 202 Lr~~~~ 207 (209)
T cd08905 202 LRQRMA 207 (209)
T ss_pred HHHHHh
Confidence 655543
No 293
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=76.38 E-value=78 Score=30.72 Aligned_cols=138 Identities=6% Similarity=-0.015 Sum_probs=74.1
Q ss_pred eeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEEEeecc-CCCc
Q 001987 818 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLA-SGEG 896 (985)
Q Consensus 818 ~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~-~~~~ 896 (985)
+..++++++.+++++.|-+-.... .-| ++.-.. ..++...-.++.. +++.......+-+..... ..+.
T Consensus 4 ~~~v~a~pe~vw~~l~D~~~~~~~--~pg---~~~~~~--~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~ 72 (146)
T cd07823 4 EFTVPAPPDRVWALLLDIERVAPC--LPG---ASLTEV--EGDDEYKGTVKVK----LGPISASFKGTARLLEDDEAARR 72 (146)
T ss_pred eEEecCCHHHHHHHhcCHHHHHhc--CCC---ceeccc--cCCCeEEEEEEEE----EccEEEEEEEEEEEEeccCCCcE
Confidence 346889999999988653322111 111 111111 1112222333333 344432222221111222 3334
Q ss_pred EEEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEe--eeeehhhhhhchHHHHHHHHHHHHHHHHHH
Q 001987 897 WIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLK--STKFQQRITQNITEKFTHRLKEMIELVERE 974 (985)
Q Consensus 897 ~vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k--~t~~K~~Ie~~~~~g~~~~~~~~~~~~~~~ 974 (985)
+.+. ....+.+.+....+...|.++. .. ..|+|.+...+.... ..+++.+|++-+ ++.++++++-|+++
T Consensus 73 ~~~~--~~g~~~~~~g~~~~~~~~~l~~-~~--~gT~v~~~~~~~~~g~l~~l~~~~v~~~~----~~~~~~~~~~l~~~ 143 (146)
T cd07823 73 AVLE--ATGKDARGQGTAEATVTLRLSP-AG--GGTRVTVDTDLALTGKLAQFGRGGIGDVA----GRLLAQFAANLEAR 143 (146)
T ss_pred EEEE--EEEecCCCcceEEEEEEEEEEe-cC--CcEEEEEEEEEEEeeEhHHhChhHHHHHH----HHHHHHHHHHHHHH
Confidence 4333 3334566667778999999987 33 589999999888877 456666666644 55566666666655
Q ss_pred H
Q 001987 975 I 975 (985)
Q Consensus 975 i 975 (985)
+
T Consensus 144 ~ 144 (146)
T cd07823 144 L 144 (146)
T ss_pred h
Confidence 4
No 294
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=72.96 E-value=64 Score=33.29 Aligned_cols=107 Identities=8% Similarity=-0.013 Sum_probs=70.3
Q ss_pred EEEEEEeccccC--CCceeeeeEE-EEeeccCCCcEEEEEEEeeCCCCC--CCeEEEEE---EEEEEecCCCCCccEEEE
Q 001987 865 RHLSYRFNRHVS--IFGGEVTCTQ-QKSPLASGEGWIVNEVMSLHDVPF--DDHFRVHF---RYEIEKSPLAHNACKCAI 936 (985)
Q Consensus 865 R~~sy~~~~~~~--~~~~~~~~~q-~~~~~~~~~~~vv~~~~~~~dVPy--gd~F~v~~---ry~i~~~~~~~~~~~l~v 936 (985)
..|.|...++.. |...+=...- ......++..+++..++..|+.|- .++-+++. .|+|++.++ +.|++..
T Consensus 89 ~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~--~~~~vt~ 166 (206)
T PF01852_consen 89 TDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGD--GRTRVTY 166 (206)
T ss_dssp EEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETT--CEEEEEE
T ss_pred CeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccC--CCceEEE
Confidence 455555433333 4444333322 222346677788888999999884 78877665 589999988 7799999
Q ss_pred EEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHHHH
Q 001987 937 YIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVERE 974 (985)
Q Consensus 937 ~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~~~ 974 (985)
...++..+|.= +..+..-+.++.-+.++.+.+.++++
T Consensus 167 ~~~~D~~G~iP-~~~~n~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T PF01852_consen 167 VSQVDPKGWIP-SWLVNMVVKSQPPNFLKNLRKALKKQ 203 (206)
T ss_dssp EEEEESSSSSH-HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCh-HHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 99988877433 55555556666677777777777664
No 295
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=72.54 E-value=25 Score=36.29 Aligned_cols=57 Identities=11% Similarity=0.128 Sum_probs=39.1
Q ss_pred EEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEecCCCCCCC---CccceEEEEee
Q 001987 568 KTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFDGPFDQA---TSLGHAEINFL 624 (985)
Q Consensus 568 ~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d~~~~~d---d~lG~~~i~l~ 624 (985)
..++|-+...+.+|.|+|++.+.+.. .....|.|+++..-..-.+| ..+|-+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 46788888999999999999999643 34668999998854210122 24555555554
No 296
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=70.80 E-value=1.4e+02 Score=31.24 Aligned_cols=146 Identities=8% Similarity=0.047 Sum_probs=76.9
Q ss_pred EeeeecCChHHHHh-ccCCCchhHHHHHHcCCcceEEcccc-cCCCCceeEEEEEEecccc--CCCceeeeeEEEEeecc
Q 001987 817 YNAELPISVKALME-MFDGGKLEHQVMEKSGCHNYVTTPWD-LVKPGVCERHLSYRFNRHV--SIFGGEVTCTQQKSPLA 892 (985)
Q Consensus 817 ~~~~~p~~~~~~~~-lf~~s~f~~~~~~~~~~~~~~~~~W~-~~~~~~~~R~~sy~~~~~~--~~~~~~~~~~q~~~~~~ 892 (985)
...+++++++.+|. +|.|..-... .+..+..=+ .+.-+... .+.|..+.|- +|.+.+=-...+.. ..
T Consensus 53 ~~~~v~~~~~~l~~~ll~D~~~~~~-------W~~~~~~~~vi~~~~~~~-~i~Y~v~~p~~~~pv~~RDfV~~r~~-~~ 123 (209)
T cd08906 53 LKAFMQCPAELVYQEVILQPEKMVL-------WNKTVSACQVLQRVDDNT-LVSYDVAAGAAGGVVSPRDFVNVRRI-ER 123 (209)
T ss_pred EEEEEcCCHHHHHHHHHhChhhccc-------cCccchhhhheeeccCCc-EEEEEEccccccCCCCCCceEEEEEE-Ee
Confidence 35678999999985 7743321110 011110000 11111222 3456554443 23333322332333 33
Q ss_pred CCCcEE-EEEEEeeCCCC-CCCeEEEE---EEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHH
Q 001987 893 SGEGWI-VNEVMSLHDVP-FDDHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEM 967 (985)
Q Consensus 893 ~~~~~v-v~~~~~~~dVP-ygd~F~v~---~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~ 967 (985)
++++|+ +..++..+.+| --++-+++ .-|.+.+.+.++++|++.-...+...+ .+=+..|.+...+..-+++..|
T Consensus 124 ~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP~~lvN~~~~~~~~~~~~~L 202 (209)
T cd08906 124 RRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKG-RLPRYLIHQSLAATMFEFASHL 202 (209)
T ss_pred cCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 455554 55555444444 56777777 456666543444788888777777766 3337788888777777776666
Q ss_pred HHHHH
Q 001987 968 IELVE 972 (985)
Q Consensus 968 ~~~~~ 972 (985)
-+.++
T Consensus 203 R~~~~ 207 (209)
T cd08906 203 RQRIR 207 (209)
T ss_pred HHHHh
Confidence 65553
No 297
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=70.25 E-value=78 Score=31.95 Aligned_cols=84 Identities=19% Similarity=0.295 Sum_probs=58.7
Q ss_pred CCCcEEEEEECCeE-EeecCccC--CCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccc
Q 001987 18 AKDSYVKVQIGKHK-SKSRILKN--NSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAA 94 (985)
Q Consensus 18 ~~DPyv~v~l~~~~-~kT~v~~~--t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~ 94 (985)
...-|++|.++++. .+|+...- ...-.|||.|.+.+. ..-..|.++||... ...+..|+++.+|+-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~-~~Pesi~l~i~E~~------~~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQIT-RWPESIKLEIYEKS------GLSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEe-cCCCEEEEEEEEcc------CccceEEEEEEeeCCCCcc
Confidence 45679999998754 66666543 344677899999983 47788999999988 2588999999999777654
Q ss_pred cCCCCC-CCeEEEee
Q 001987 95 EDNHML-PPTWFSLE 108 (985)
Q Consensus 95 ~~~~~~-~~~W~~L~ 108 (985)
...... ...|+...
T Consensus 109 ~~~~~~~~~~~~eFs 123 (168)
T PF15625_consen 109 HTSTDNVPLEEYEFS 123 (168)
T ss_pred cccccCCceEeEEEc
Confidence 421111 44566554
No 298
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=70.04 E-value=9.9 Score=38.98 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=40.7
Q ss_pred EEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCc
Q 001987 31 KSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVS 90 (985)
Q Consensus 31 ~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~ 90 (985)
.++|.|...+.+|.|+|++.+.++ ......|.|++++.....+ .....+|-+-+||-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k---~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDK---GEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccC---CCCCceEEEEEeec
Confidence 478889988999999999999997 4567889999988651110 11145666666654
No 299
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=69.70 E-value=10 Score=39.01 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=40.7
Q ss_pred EEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCc
Q 001987 31 KSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVS 90 (985)
Q Consensus 31 ~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~ 90 (985)
..+|.|...+.+|.|+|++.+.++ ......|.|++++...+.+ .-.....+|-+-+||-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~-kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEA-KDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccc-cCCCCCceEEEEEeee
Confidence 478888888899999999999987 4567889999988652111 0001235666666654
No 300
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=67.51 E-value=1.4e+02 Score=29.78 Aligned_cols=144 Identities=15% Similarity=0.208 Sum_probs=86.4
Q ss_pred eeEeecChhhhhhcccCCCchhhHHHHHHhCCccceeCCCcccCCCCCceEEEEEEEeccC-------cCc-cceEEEEE
Q 001987 256 DQLYQVSPCDLNTFLFAPDSQFRKDLAELQGTKDVQEGPWEWKSGEMTCLTRAVSYMKAAT-------KLV-KAVKATEQ 327 (985)
Q Consensus 256 d~~~~~~~~~l~~llf~~~s~F~~~~~~~~~~~d~~~~pw~~~~~~~~~~~R~~~y~~~~~-------~~~-k~~~~~e~ 327 (985)
...|++++++++.++.. ..|++..+................. ++....+.-.++.. +++ ..+...++
T Consensus 4 ~~~~~~~~~~v~~~~~d--~~y~~~r~~~~g~~~~~~~~~~~~~---~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~ 78 (159)
T PF10698_consen 4 SVEYPAPVERVWAAFTD--EDYWEARCAALGADNAEVESFEVDG---DGVRVTVRQTVPADKLPSAARKFVGGDLRVTRT 78 (159)
T ss_pred EEEcCCCHHHHHHHHcC--HHHHHHHHHHcCCCCceEEEEEEcC---CeEEEEEEEecChhhCCHHHHHhcCCCeEEEEE
Confidence 45899999999999985 5688888766655333344332222 23333333344432 223 35667777
Q ss_pred EEEEeeCCCeEEEEEEEeCCCCCCCCceEeEEEEEEecCCCCCCCCCccEEEEEEEEEEeeecceeeeeecccccchHHH
Q 001987 328 QTYLKANGQEFAILVTVSTPDVPYGNTFNVQLLYKIIPGPELSSGEDSSHLIISWGIDFHQSTMMRGMIEGGARQGLKES 407 (985)
Q Consensus 328 q~~~~~~~~~~~v~~~~~tpdvP~g~~F~v~~~y~i~~~~~~~~~~~~~~l~v~~~i~~~~s~~~Kg~iek~~~~g~~e~ 407 (985)
+++-..++..+....+...+++| ..+.-.+.+.+ ....|++.+...++-.- .++-|.||+.....+...
T Consensus 79 e~w~~~~~g~~~g~~~~~~~G~P----~~~~G~~~L~~------~~~gt~~~~~g~v~v~V-PlvGgkiE~~v~~~~~~~ 147 (159)
T PF10698_consen 79 ETWTPLDDGRRTGTFTVSIPGAP----VSISGTMRLRP------DGGGTRLTVEGEVKVKV-PLVGGKIEKAVAENLRKL 147 (159)
T ss_pred EEEecCCCCeEEEEEEEEecCce----EEEEEEEEEec------CCCCEEEEEEEEEEEEE-ccccHHHHHHHHHHHHHH
Confidence 77733344555555556666665 45566666664 44567777766664433 367888998777777666
Q ss_pred HHHHHHHH
Q 001987 408 FEQFANLL 415 (985)
Q Consensus 408 ~~~~~~~l 415 (985)
+..-..+.
T Consensus 148 ~~~e~~~~ 155 (159)
T PF10698_consen 148 LEAEQEFT 155 (159)
T ss_pred HHHHHHHH
Confidence 65444333
No 301
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=65.67 E-value=67 Score=33.60 Aligned_cols=116 Identities=10% Similarity=0.113 Sum_probs=74.4
Q ss_pred eeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccc-cCCCCceeEEEEEEeccccCCCceeeeeEEEE--eeccCC
Q 001987 818 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWD-LVKPGVCERHLSYRFNRHVSIFGGEVTCTQQK--SPLASG 894 (985)
Q Consensus 818 ~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~-~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~--~~~~~~ 894 (985)
..+++.++..++... ...+..-|..+..|. -+.-+..+-.+.|+++. +.|...+--+..+. ....+|
T Consensus 57 ~~ei~~~p~~VL~~v---------l~~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~-~~P~~~RD~v~~R~w~~~~~~G 126 (205)
T cd08909 57 SVEVEAPPSVVLNRV---------LRERHLWDEDFLQWKVVETLDKQTEVYQYVLNC-MAPHPSRDFVVLRSWRTDLPKG 126 (205)
T ss_pred EEEeCCCHHHHHHHH---------HhhHhhHHhhcceeEEEEEeCCCcEEEEEEeec-CCCCCCCEEEEEEEEEEeCCCC
Confidence 446777777775532 122343444444554 22233336667777754 33655554444333 345677
Q ss_pred CcEEEEEEEeeCCCCCCCeEEE---EEEEEEEecCCCCCccEEEEEEEEEEEee
Q 001987 895 EGWIVNEVMSLHDVPFDDHFRV---HFRYEIEKSPLAHNACKCAIYIGISWLKS 945 (985)
Q Consensus 895 ~~~vv~~~~~~~dVPygd~F~v---~~ry~i~~~~~~~~~~~l~v~~~v~~~k~ 945 (985)
.+.++..++.-++.|-=++.+. ..+|.|++.++ +.|+|.--..+.+.++
T Consensus 127 ~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~--g~trvt~i~~vDpkG~ 178 (205)
T cd08909 127 ACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGS--GKSRLTHICRVDLKGH 178 (205)
T ss_pred cEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCC--CCEEEEEEEEecCCCC
Confidence 7777888888888887666664 47899999988 7899998888888664
No 302
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=65.04 E-value=1.1e+02 Score=31.91 Aligned_cols=145 Identities=16% Similarity=0.040 Sum_probs=81.7
Q ss_pred eeeec-CChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEE-EEee-ccCC
Q 001987 818 NAELP-ISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQ-QKSP-LASG 894 (985)
Q Consensus 818 ~~~~p-~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q-~~~~-~~~~ 894 (985)
..+|+ ++++.|++++.|.++..+...... ++. +....+ .+ +.|...+..-|.+.+=-..+ .... ..++
T Consensus 54 ~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~--~~~----~~~~~~--~~-i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~ 124 (207)
T cd08910 54 FGVLEDCSPSLLADVYMDLEYRKQWDQYVK--ELY----EKECDG--ET-VIYWEVKYPFPLSNRDYVYIRQRRDLDVEG 124 (207)
T ss_pred EEEEcCCCHHHHHHHHhCHHHHHHHHHHHH--hhe----eecCCC--CE-EEEEEEEcCCCCCCceEEEEEEeccccCCC
Confidence 44777 799999998877776554444322 111 011122 23 44543233333333222222 2221 1233
Q ss_pred C-c-EEEEEEEeeCCCCCC-CeEEE---EEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHH
Q 001987 895 E-G-WIVNEVMSLHDVPFD-DHFRV---HFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMI 968 (985)
Q Consensus 895 ~-~-~vv~~~~~~~dVPyg-d~F~v---~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~ 968 (985)
. . +++..++..|++|-. ++-+| ...|.|++.+. ++|++......+- +..+=+.++..-+.++.-..++.|-
T Consensus 125 ~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~--~~t~i~~~~~~DP-gG~IP~wlvN~~~~~~~~~~l~~l~ 201 (207)
T cd08910 125 RKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGK--KGSKVFMYYFDNP-GGMIPSWLINWAAKNGVPNFLKDMQ 201 (207)
T ss_pred CeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCC--CceEEEEEEEeCC-CCcchHHHHHHHHHHhhHHHHHHHH
Confidence 2 3 345566777788865 44444 56777876665 7899888888876 3333366677777777777777777
Q ss_pred HHHHHH
Q 001987 969 ELVERE 974 (985)
Q Consensus 969 ~~~~~~ 974 (985)
.++++|
T Consensus 202 ka~~~y 207 (207)
T cd08910 202 KACQNY 207 (207)
T ss_pred HHHhcC
Confidence 776654
No 303
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=64.57 E-value=8 Score=47.94 Aligned_cols=97 Identities=14% Similarity=0.188 Sum_probs=74.8
Q ss_pred CCcEEEEEECCE-EEEeeeccCC-CCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCccceEEEEeeccccCcccce
Q 001987 557 SDPYVVFTCNGK-TRTSSVQLQT-CDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTELADM 634 (985)
Q Consensus 557 ~DPyv~v~~~~~-~~kT~~~~~t-lnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~~~~ 634 (985)
+++|+.+.+... ..+|..+.+. .+|.|.+.|+.. .......+.+.|-+.+. ++.-..+|.+.+++..+..+.....
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~-~~h~~g~v~~~~~~~~~-~G~s~~w~~v~~s~~~~~~~~~~~~ 215 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIG-FAHKAGYVIFRVKGARV-PGWSKRWGRVKISFLQYCSGHRIGG 215 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhcccc-ccccccEEEEeecCCcc-ccceeEEEEeccchhhhhccccccc
Confidence 699999999754 4577777666 899999999887 56777789999998887 5656799999999999988888899
Q ss_pred EEEccccccCCcce--eEEEEEe
Q 001987 635 WVSLEGKLAQSAQS--KVHLRIF 655 (985)
Q Consensus 635 w~~L~~~~~~~~~g--~l~l~~~ 655 (985)
|+++....+.+.+| .+++++.
T Consensus 216 ~~~Il~~d~~~~~~~~~~~~~~~ 238 (887)
T KOG1329|consen 216 WFPILDNDGKPHQKGSNESLRLG 238 (887)
T ss_pred eeeeeccCCccccCCcccceEEe
Confidence 99987644433333 3455443
No 304
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=63.04 E-value=98 Score=32.39 Aligned_cols=120 Identities=4% Similarity=-0.048 Sum_probs=64.5
Q ss_pred eeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCC-ceeeeeEEEEeeccCCCc
Q 001987 818 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIF-GGEVTCTQQKSPLASGEG 896 (985)
Q Consensus 818 ~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~-~~~~~~~q~~~~~~~~~~ 896 (985)
..+++++++++++++.|..-......... ...+- +..+...+.+.|+.+.|.... ..+=-...+.....++.+
T Consensus 50 e~~v~as~~~v~~ll~D~~~r~~Wd~~~~--~~~vl----~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~ 123 (205)
T cd08874 50 AGVIKAPLATVWKAVKDPRTRFLYDTMIK--TARIH----KTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS 123 (205)
T ss_pred EEEEcCCHHHHHHHHhCcchhhhhHHhhh--heeee----eecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence 55779999999998855443333333222 11111 122233444445545554321 222223323343444444
Q ss_pred EEEEEEEeeCCCC-CC-CeEE---EEEEEEEEecCCCC-CccEEEEEEEEEEE
Q 001987 897 WIVNEVMSLHDVP-FD-DHFR---VHFRYEIEKSPLAH-NACKCAIYIGISWL 943 (985)
Q Consensus 897 ~vv~~~~~~~dVP-yg-d~F~---v~~ry~i~~~~~~~-~~~~l~v~~~v~~~ 943 (985)
++...++.-+.+| -+ ++-+ +...|.|++...++ ++|+|.-...++=.
T Consensus 124 vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPg 176 (205)
T cd08874 124 VVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALC 176 (205)
T ss_pred EEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCC
Confidence 4445555555777 45 6655 56789999983322 68998877777654
No 305
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=62.89 E-value=16 Score=37.29 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=39.2
Q ss_pred EeecCccCCCCCeEeeEEEEEEe-c-CCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCcc
Q 001987 32 SKSRILKNNSNPVWNEEFVFRVH-N-IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSS 91 (985)
Q Consensus 32 ~kT~v~~~t~nP~wnE~f~f~v~-~-~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~ 91 (985)
++|.+..+ .+|.|+|+|.+.+| + .....|.|++|+...+.+-.......+|-+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444444 89999999999997 2 357899999999872110000234577777777665
No 306
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=62.37 E-value=1.7e+02 Score=28.98 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=81.5
Q ss_pred EeeeecCChHHHHhccCC-CchhHHHH-HHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEEEeeccCC
Q 001987 817 YNAELPISVKALMEMFDG-GKLEHQVM-EKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASG 894 (985)
Q Consensus 817 ~~~~~p~~~~~~~~lf~~-s~f~~~~~-~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~~~ 894 (985)
.+..++++++.||..|.. ..+..+++ +.-..-++..+.| ..++-.|.++|. + +.+. ....|+.... |.
T Consensus 8 ~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdg---g~gGSIk~~~f~---~-~~~~--~~~Kekve~~-D~ 77 (151)
T PF00407_consen 8 VEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDG---GPGGSIKKWTFG---P-GGPF--KYVKEKVEAI-DE 77 (151)
T ss_dssp EEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSS---STTT-EEEEEEE---T-TSSE--EEEEEEEEEE-ET
T ss_pred EEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCC---CCCCeEEEEEec---C-CCCc--ceeEEEEEee-cC
Confidence 355678999999998843 23444444 4445556667887 345789999997 3 3222 2234333333 34
Q ss_pred CcEEEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhc-hHHHHHHHHHHHHHHHHH
Q 001987 895 EGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQN-ITEKFTHRLKEMIELVER 973 (985)
Q Consensus 895 ~~~vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~-~~~g~~~~~~~~~~~~~~ 973 (985)
+...+..++.=-|+ .++|..-.....+.+.+. .. ..+.|.++|-+.. +.. .-....+.+..++..+..
T Consensus 78 ~~~~~~y~viEGd~-l~~~~~~~~~~~~~~~~~--g~--~v~k~t~~Ye~~~------~~~~~p~~~~~~~~~~~K~iea 146 (151)
T PF00407_consen 78 ENKTITYTVIEGDV-LGDYKSFKSTIQKIPKGD--GG--CVVKWTIEYEKKG------EDVPPPEKYLDFAVGMFKAIEA 146 (151)
T ss_dssp TTTEEEEEEEEETT-GTTTEEEEEEEEEEEETT--SC--EEEEEEEEEEESS------TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEeccc-cccEEEEEEEEEecCCCC--Cc--eEEEEEEEEEecC------CCCCCcHHHHHHHHHHHHHHHH
Confidence 43444444444564 456666555556655444 44 4677788888732 222 345556667778888888
Q ss_pred HHhh
Q 001987 974 EILF 977 (985)
Q Consensus 974 ~i~~ 977 (985)
|+.+
T Consensus 147 yLla 150 (151)
T PF00407_consen 147 YLLA 150 (151)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
No 307
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=61.12 E-value=19 Score=36.98 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=38.8
Q ss_pred EEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEecCCCCCCC--CccceEEEEee
Q 001987 568 KTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFDGPFDQA--TSLGHAEINFL 624 (985)
Q Consensus 568 ~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d~~~~~d--d~lG~~~i~l~ 624 (985)
..++|-+...+.+|.|+|++.+.+.. .....|.|++++.-. -.+. ..+|-+.+||-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~-~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST-KDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee-ccCCCCCceEEEEEeec
Confidence 35789999999999999999999643 345689998887543 1111 34555555553
No 308
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.96 E-value=3.2 Score=49.80 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=63.7
Q ss_pred CCCcEEEEEECCEE-EEeeeccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCccceEEEEeecccc-Ccccc
Q 001987 556 LSDPYVVFTCNGKT-RTSSVQLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTS-TELAD 633 (985)
Q Consensus 556 ~~DPyv~v~~~~~~-~kT~~~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~-~~~~~ 633 (985)
.-|||+-+.+.-.. ..+.+.+.+..|.|+++|...+. ....+.|.||..-. ...+++..++.+..+++.. .....
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~--~~~~~~i~v~~~~~-~~~~~~~a~~~~~~e~~k~~~~~~~ 103 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV--AGGAKNIIVLLKSP-DPKALSEAQLSLQEESQKLLALEQR 103 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeee--cCCceEEEEEecCC-cchhhHHHhHHHHHHHHHHHhhhhh
Confidence 46799988886433 35566889999999999999953 44678888887543 3445555555555555443 23456
Q ss_pred eEEEccccccCCcceeEEEEEeeecC
Q 001987 634 MWVSLEGKLAQSAQSKVHLRIFLENN 659 (985)
Q Consensus 634 ~w~~L~~~~~~~~~g~l~l~~~ls~~ 659 (985)
.|..++. .|.++..+.+++.
T Consensus 104 ~w~~~~~------~g~~~~~~~~~~~ 123 (694)
T KOG0694|consen 104 LWVLIEE------LGTLLKPAALTGT 123 (694)
T ss_pred hcccccc------ccceeeeecccCc
Confidence 7988773 4677777766554
No 309
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=57.42 E-value=24 Score=36.01 Aligned_cols=39 Identities=13% Similarity=0.346 Sum_probs=32.8
Q ss_pred EEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecC
Q 001987 31 KSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHN 69 (985)
Q Consensus 31 ~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d 69 (985)
...|.|.-.+.+|.|+|++.+.+| ......|.|+.|+.+
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 367888888899999999999987 345578999999977
No 310
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=54.49 E-value=2e+02 Score=27.35 Aligned_cols=59 Identities=3% Similarity=-0.061 Sum_probs=37.5
Q ss_pred CeEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHHHHH
Q 001987 912 DHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 975 (985)
Q Consensus 912 d~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~~~i 975 (985)
+....+.+|.++..++ ++|++.....+.+...-.+-+. .+..-++..+..++..|++.+
T Consensus 82 ~~~~~~g~w~~~~~~~--~~t~Vt~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~lk~~~ 140 (142)
T cd08861 82 PVASMSGEWRFEPLGG--GGTRVTLRHDFTLGIDSPEAVP---WIRRALDRNSRAELAALRAAA 140 (142)
T ss_pred ChhhheeEEEEEECCC--CcEEEEEEEEEEECCCCchhHH---HHHHHHccccHHHHHHHHHHh
Confidence 4456788999999886 6898887777777754443222 333333555556666666554
No 311
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=53.50 E-value=1e+02 Score=31.70 Aligned_cols=40 Identities=10% Similarity=0.191 Sum_probs=32.3
Q ss_pred EEEEeeeccCCCCCeEeEEEEEEeec--CCCCEEEEEEEecC
Q 001987 568 KTRTSSVQLQTCDPQWHDILEFDAME--EPPSVLDVEVFDFD 607 (985)
Q Consensus 568 ~~~kT~~~~~tlnP~Wne~f~f~v~~--~~~~~L~v~V~D~d 607 (985)
....|.|..++.+|.|+|++.+.+-. .+...|.|+.|+..
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 45778888899999999999998633 33558999999976
No 312
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=52.47 E-value=36 Score=34.71 Aligned_cols=56 Identities=18% Similarity=0.282 Sum_probs=36.7
Q ss_pred EEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecCCCC----CCCCccceEEEEeec
Q 001987 569 TRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDGPF----DQATSLGHAEINFLK 625 (985)
Q Consensus 569 ~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d~~~----~~dd~lG~~~i~l~~ 625 (985)
.++|-+..+ .+|.|+|+|.+.+..+ +...|.|++++.+..- .....+|-+.+||-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344444444 9999999999996333 3568999999977410 113456666666654
No 313
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=52.46 E-value=1.3e+02 Score=31.42 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=67.8
Q ss_pred eeeecCChHHHHhcc-CCCchhHHHHHHcCCcceEEcccc-cCCCCceeEEEEEEeccccCCCceeeeeEEEEe--eccC
Q 001987 818 NAELPISVKALMEMF-DGGKLEHQVMEKSGCHNYVTTPWD-LVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKS--PLAS 893 (985)
Q Consensus 818 ~~~~p~~~~~~~~lf-~~s~f~~~~~~~~~~~~~~~~~W~-~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~--~~~~ 893 (985)
..++|+++.++..++ +.- ..-|-.+..|+ .+.-+..+..+.|.++.| -|...+=-+.++.. ...+
T Consensus 57 ~~~i~a~~~~vl~~lld~~----------~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~P-wP~~~RD~V~~Rs~~~~~~~ 125 (204)
T cd08908 57 TIEVPAAPEEILKRLLKEQ----------HLWDVDLLDSKVIEILDSQTEIYQYVQNSM-APHPARDYVVLRTWRTNLPK 125 (204)
T ss_pred EEEeCCCHHHHHHHHHhhH----------HHHHHHhhheEeeEecCCCceEEEEEccCC-CCCCCcEEEEEEEEEEeCCC
Confidence 557899999998866 331 11122222232 122233345555555444 55544444443222 3455
Q ss_pred CCcEEEEEEEeeCCCCCCCeEE---EEEEEEEEecCCCCCccEEEEEEEEEEEe
Q 001987 894 GEGWIVNEVMSLHDVPFDDHFR---VHFRYEIEKSPLAHNACKCAIYIGISWLK 944 (985)
Q Consensus 894 ~~~~vv~~~~~~~dVPygd~F~---v~~ry~i~~~~~~~~~~~l~v~~~v~~~k 944 (985)
+...++..|+.-+.+|=. +.+ +..+|.|++.++ ++|+|.--..+...+
T Consensus 126 g~~~I~~~Sv~h~~~P~~-~VR~~~~~~~w~i~P~g~--g~t~vtyi~~~DPgG 176 (204)
T cd08908 126 GACALLATSVDHDRAPVA-GVRVNVLLSRYLIEPCGS--GKSKLTYMCRIDLRG 176 (204)
T ss_pred CeEEEEEeecCcccCCcC-ceEEEEEeeEEEEEECCC--CcEEEEEEEEeCCCC
Confidence 556666666888889955 555 578899999887 899998877777654
No 314
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=50.07 E-value=2e+02 Score=28.56 Aligned_cols=71 Identities=20% Similarity=0.121 Sum_probs=57.0
Q ss_pred CCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEe-eeeehhhhhhchHHHHHHHHHHHHHHHHHHHh
Q 001987 906 HDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLK-STKFQQRITQNITEKFTHRLKEMIELVEREIL 976 (985)
Q Consensus 906 ~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k-~t~~K~~Ie~~~~~g~~~~~~~~~~~~~~~i~ 976 (985)
..+=|.+++.|+-+-.....+++++.|.+.-.+.|.-.+ ...+.+.||+=..+-.+++.+.=.+.++..++
T Consensus 81 ~Nls~~~~~~v~E~~~Y~~~p~np~~T~~~q~a~i~~~~~~~~~~~~iE~~~~~~f~~na~kgr~~~e~vi~ 152 (157)
T PF04707_consen 81 RNLSFSSFLSVEETCVYKPHPDNPNWTLFKQEATISIKGSFSGFSSRIEKFSVSRFKSNAKKGREGMEWVIK 152 (157)
T ss_pred EEcccCceeEEEEEEEEEECCCCCCcceEEEEEEEEEeCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999888888999999999998665 56778999988888777777766666555554
No 315
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=49.74 E-value=4.9 Score=48.33 Aligned_cols=96 Identities=16% Similarity=0.219 Sum_probs=62.8
Q ss_pred CCCcEEEEEECC-eEEeecCccCCCCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccC
Q 001987 18 AKDSYVKVQIGK-HKSKSRILKNNSNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAED 96 (985)
Q Consensus 18 ~~DPyv~v~l~~-~~~kT~v~~~t~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~ 96 (985)
..|||+-|.+.- +...+.+.+.+..|.|+++|..++ .....+.|.|+.... ...+.+..++.+-..++...
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v--~~~~~~~i~v~~~~~-----~~~~~~~a~~~~~~e~~k~~- 98 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEV--VAGGAKNIIVLLKSP-----DPKALSEAQLSLQEESQKLL- 98 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeee--ecCCceEEEEEecCC-----cchhhHHHhHHHHHHHHHHH-
Confidence 468999998874 335666788899999999999997 566677777887651 23444444444433333321
Q ss_pred CCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 97 NHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 97 ~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
......|..++ +.|.++..+.+...
T Consensus 99 -~~~~~~w~~~~----------~~g~~~~~~~~~~~ 123 (694)
T KOG0694|consen 99 -ALEQRLWVLIE----------ELGTLLKPAALTGT 123 (694)
T ss_pred -hhhhhhccccc----------cccceeeeecccCc
Confidence 12345687766 45888888877554
No 316
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=48.98 E-value=64 Score=32.54 Aligned_cols=80 Identities=11% Similarity=0.142 Sum_probs=55.2
Q ss_pred CcEEEEEECCEEE-Eeee--ccCCCCCeEeEEEEEEeecCCCCEEEEEEEecCCCCCCCCccceEEEEeeccccCc----
Q 001987 558 DPYVVFTCNGKTR-TSSV--QLQTCDPQWHDILEFDAMEEPPSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTE---- 630 (985)
Q Consensus 558 DPyv~v~~~~~~~-kT~~--~~~tlnP~Wne~f~f~v~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~---- 630 (985)
--|+++.++++.. +|+. ......=.+||.|.+.+. .-...|.++||-... ..+..|+++.||+.......
T Consensus 38 ~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~-~~Pesi~l~i~E~~~--~~~~~la~v~vpvP~~~~~~~~~~ 114 (168)
T PF15625_consen 38 RYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQIT-RWPESIKLEIYEKSG--LSDRLLAEVFVPVPGSTVHTSTDN 114 (168)
T ss_pred eEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEe-cCCCEEEEEEEEccC--ccceEEEEEEeeCCCCcccccccC
Confidence 4688888887654 4444 223444456799999964 467899999999775 57789999999998754331
Q ss_pred ccceEEEccc
Q 001987 631 LADMWVSLEG 640 (985)
Q Consensus 631 ~~~~w~~L~~ 640 (985)
....|+...+
T Consensus 115 ~~~~~~eFsS 124 (168)
T PF15625_consen 115 VPLEEYEFSS 124 (168)
T ss_pred CceEeEEEcC
Confidence 1445666554
No 317
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=48.59 E-value=43 Score=34.33 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=41.5
Q ss_pred EEeecCccCCCCCeEeeEEEEEEe--cCCCceEEEEEEecCCCCC----CCCCCCCeeEEEEEeCcc
Q 001987 31 KSKSRILKNNSNPVWNEEFVFRVH--NIDDEELVVSVFQHNDDSG----LFGSSGELMGRVRVPVSS 91 (985)
Q Consensus 31 ~~kT~v~~~t~nP~wnE~f~f~v~--~~~~~~L~~~V~D~d~~~~----~~~~~d~~lG~~~i~L~~ 91 (985)
...|.|...+.+|.|+|++.+.+| ......|.|+.|+..-+.. -..+....+|-+.+||-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 477888888899999999999987 3456789999999762110 000112456666666554
No 318
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=48.33 E-value=43 Score=34.14 Aligned_cols=41 Identities=10% Similarity=0.170 Sum_probs=32.8
Q ss_pred EEEEeeeccCCCCCeEeEEEEEEeecC--CCCEEEEEEEecCC
Q 001987 568 KTRTSSVQLQTCDPQWHDILEFDAMEE--PPSVLDVEVFDFDG 608 (985)
Q Consensus 568 ~~~kT~~~~~tlnP~Wne~f~f~v~~~--~~~~L~v~V~D~d~ 608 (985)
....|.|..++.+|.|+|++.+.+..+ ....|.|+.++.+.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 456788889999999999999996333 34589999999664
No 319
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=47.68 E-value=1.7e+02 Score=28.49 Aligned_cols=85 Identities=19% Similarity=0.267 Sum_probs=65.4
Q ss_pred EEEEEEEEeecCC---CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEE-Ee-----------cCCCceEEEEEEecC
Q 001987 5 RLYVYVLQGQDLL---AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFR-VH-----------NIDDEELVVSVFQHN 69 (985)
Q Consensus 5 ~L~V~V~~Ar~L~---~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~-v~-----------~~~~~~L~~~V~D~d 69 (985)
.|.++-+.|-|.- +.|-|..|++.++..+|+......-=.++|.|.|+ +. ......+.++++.+.
T Consensus 3 eL~i~aVTCPGv~L~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~ 82 (140)
T PF14909_consen 3 ELEIHAVTCPGVWLCDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLV 82 (140)
T ss_pred EEEEEEEecCCeEeCCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEe
Confidence 4667777776643 77899999999999999988777666789999998 32 245688999999988
Q ss_pred CCCCCCCCCCCeeEEEEEeCcccccc
Q 001987 70 DDSGLFGSSGELMGRVRVPVSSIAAE 95 (985)
Q Consensus 70 ~~~~~~~~~d~~lG~~~i~L~~l~~~ 95 (985)
. .-...|+...-.++++...
T Consensus 83 ---~---~~g~iLA~ye~n~rDfLfP 102 (140)
T PF14909_consen 83 ---P---PAGEILAYYEENTRDFLFP 102 (140)
T ss_pred ---C---CCCcEEEEEeccccceEcC
Confidence 2 2367888888788887654
No 320
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=47.66 E-value=12 Score=44.71 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=52.2
Q ss_pred cccceeEeeeeEeeeeccccCcceEEEEeccccccccccCCcccccCCCeEEEEEecCCCccccCCCCcCCccccEEEEE
Q 001987 677 GKKGRLFLSARIVGFYANLFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHGAKSQDEEGRLRFYF 756 (985)
Q Consensus 677 ~~~gr~y~s~~~~~f~snif~~~~~~~i~~~di~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~F 756 (985)
+..||+|+|.+++||.|--+.- -.+++|...|..+++...+ +..+.-+.+++. +..-+.|
T Consensus 38 ~~~G~l~~s~~f~cF~s~~~~~-c~~~~Pl~~vr~ve~~~~s--s~~~~~i~~~~~-----------------~~~~~~f 97 (671)
T KOG4347|consen 38 HEQGRLFLSTNFICFASDTEWL-CSFITPLLAVRSVERLDDS--SLFTQLISLFTS-----------------NMVGMRF 97 (671)
T ss_pred hccceeeeccceEEeecCCccc-ceEeeehhhhhhhhccCcc--ccchhhhHHhhc-----------------CcceEEe
Confidence 3559999999999999976654 6799999999999998722 222222333322 2445779
Q ss_pred eeccCcchhhHHHH
Q 001987 757 QSFVSFNDASRTIM 770 (985)
Q Consensus 757 ~SF~srd~a~~~i~ 770 (985)
..+..|++.+--+.
T Consensus 98 ~~~~~r~~~~~k~~ 111 (671)
T KOG4347|consen 98 GGLTERLKLLSKLH 111 (671)
T ss_pred cchhhHHHHHHHHh
Confidence 99988988765443
No 321
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=43.85 E-value=3e+02 Score=28.43 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=61.3
Q ss_pred eeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccc-cCCCCceeEEEEEEeccccCCCceeeeeEEE-Ee-eccCC
Q 001987 818 NAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWD-LVKPGVCERHLSYRFNRHVSIFGGEVTCTQQ-KS-PLASG 894 (985)
Q Consensus 818 ~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~-~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~-~~-~~~~~ 894 (985)
..++++++++++.++- +.++.-|..+..++ -+.-+.....+.|..+. ..|...+=-+..+ .. ...++
T Consensus 49 ~~~v~a~~~~v~~~l~---------d~r~~Wd~~~~~~~vie~id~~~~i~y~~~~~-p~pv~~RDfV~~r~~~~~~~~g 118 (197)
T cd08869 49 STEVEAPPEEVLQRIL---------RERHLWDDDLLQWKVVETLDEDTEVYQYVTNS-MAPHPTRDYVVLRTWRTDLPKG 118 (197)
T ss_pred EEEeCCCHHHHHHHHH---------HHHhccchhhheEEEEEEecCCcEEEEEEeeC-CCCCCCceEEEEEEEEecCCCC
Confidence 5578899999988441 11222233333333 11112222333344433 3344433333332 22 23344
Q ss_pred CcEEEEEEEee-CCCCCCCeEEEE---EEEEEEecCCCCCccEEEEEEEEEEEe
Q 001987 895 EGWIVNEVMSL-HDVPFDDHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLK 944 (985)
Q Consensus 895 ~~~vv~~~~~~-~dVPygd~F~v~---~ry~i~~~~~~~~~~~l~v~~~v~~~k 944 (985)
...+...++.- ..+|= ++.+++ ..|.|++.++ ++|+|.-...+...+
T Consensus 119 ~~~i~~~Sv~~~~~~p~-g~VR~~~~~~g~~i~p~~~--~~t~vty~~~~Dp~G 169 (197)
T cd08869 119 ACVLVETSVEHTEPVPL-GGVRAVVLASRYLIEPCGS--GKSRVTHICRVDLRG 169 (197)
T ss_pred cEEEEEECCcCCCCCCC-CCEEEEEEeeeEEEEECCC--CCeEEEEEEEECCCC
Confidence 34444555433 36766 766654 6799999876 899999999998877
No 322
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=43.34 E-value=4.1e+02 Score=27.74 Aligned_cols=145 Identities=8% Similarity=0.016 Sum_probs=74.5
Q ss_pred EeeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEe-ccccCCCceeee--eEEEEeec-c
Q 001987 817 YNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRF-NRHVSIFGGEVT--CTQQKSPL-A 892 (985)
Q Consensus 817 ~~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~-~~~~~~~~~~~~--~~q~~~~~-~ 892 (985)
...+++++++.+.+++.+.+.......... +.. .....+. ...+.|.. ..| -|.+.+-. ..+..... .
T Consensus 50 ~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~--~~~----~l~~~~~-~~~v~y~~~~~P-wPv~~RD~v~~~~~~~~~~~ 121 (215)
T cd08877 50 MEGEIDGPLFNLLALLNEVELYKTWVPFCI--RSK----KVKQLGR-ADKVCYLRVDLP-WPLSNREAVFRGFGVDRLEE 121 (215)
T ss_pred EEEEecCChhHeEEEEehhhhHhhhcccce--eeE----EEeecCC-ceEEEEEEEeCc-eEecceEEEEEEEEEeeecc
Confidence 466889999999998866665554444321 111 1111111 23455654 333 22222221 22222223 3
Q ss_pred CCCcEEEEEEEeeC-C--------CCCCC--e---EEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHH
Q 001987 893 SGEGWIVNEVMSLH-D--------VPFDD--H---FRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITE 958 (985)
Q Consensus 893 ~~~~~vv~~~~~~~-d--------VPygd--~---F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~ 958 (985)
++..++...+...+ + +|=.+ + -.+...|.|++.++ ++|++...+.+.-..+-+=+.+|..-+.+
T Consensus 122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~--~~t~v~~~~~~DP~g~~IP~~liN~~~k~ 199 (215)
T cd08877 122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISP--TKCYLRFVANVDPKMSLVPKSLLNFVARK 199 (215)
T ss_pred CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCC--CCeEEEEEEEcCCCcccCCHHHHHHHHHH
Confidence 44333333322211 1 55443 2 23566788999888 89999999999877772225555555544
Q ss_pred HHHHHHHHHHHHH
Q 001987 959 KFTHRLKEMIELV 971 (985)
Q Consensus 959 g~~~~~~~~~~~~ 971 (985)
.....+..+..++
T Consensus 200 ~~~~~~~~l~k~~ 212 (215)
T cd08877 200 FAGLLFEKIQKAA 212 (215)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 323
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=42.60 E-value=6 Score=46.65 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=44.4
Q ss_pred CCCcEEEEEECCEEEEeeeccCCCCCeEeEEEEEEeecCC-CCEEEEEEEecCCCCCCCCccc
Q 001987 556 LSDPYVVFTCNGKTRTSSVQLQTCDPQWHDILEFDAMEEP-PSVLDVEVFDFDGPFDQATSLG 617 (985)
Q Consensus 556 ~~DPyv~v~~~~~~~kT~~~~~tlnP~Wne~f~f~v~~~~-~~~L~v~V~D~d~~~~~dd~lG 617 (985)
..+|+++..++.+.++|+....+.+|+|||. ++++..-. ...|...|.+++. .+.+|.+.
T Consensus 304 ~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~-~~lndS~A 364 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCE-LDLNDSYA 364 (975)
T ss_pred CCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhcccccc-ccccchhh
Confidence 5689999999999999999999999999997 66543222 3356666666666 45555433
No 324
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=42.33 E-value=10 Score=34.98 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=45.0
Q ss_pred cceeEeeeeEeeeecc---------------ccCcceEEEEeccccccccccCCcccccCCCeEEEEEecCCCccccCCC
Q 001987 679 KGRLFLSARIVGFYAN---------------LFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIILWKGRGLDARHGA 743 (985)
Q Consensus 679 ~gr~y~s~~~~~f~sn---------------if~~~~~~~i~~~di~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 743 (985)
.|.+.++...+.|..+ .-.......+++++|..|.+...-+ -..|+.|+..+|+..
T Consensus 18 ~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyll---r~~AlEiF~~dg~s~------ 88 (106)
T PF14844_consen 18 PGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLL---RDTALEIFFSDGRSY------ 88 (106)
T ss_dssp EEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETT---EEEEEEEEETTS-EE------
T ss_pred EEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcC---cceEEEEEEcCCcEE------
Confidence 4777777777777765 3334445789999999999876543 346788988766322
Q ss_pred CcCCccccEEEEEeeccCcchhhHHH
Q 001987 744 KSQDEEGRLRFYFQSFVSFNDASRTI 769 (985)
Q Consensus 744 ~~~~~~~~~k~~F~SF~srd~a~~~i 769 (985)
=+.|.|.-.||++|+.|
T Consensus 89 ---------f~~F~~~~~R~~v~~~l 105 (106)
T PF14844_consen 89 ---------FFNFESKKERDEVYNKL 105 (106)
T ss_dssp ---------EEE-SSHHHHHHHHCCS
T ss_pred ---------EEEcCCHHHHHHHHHhh
Confidence 13344667777777543
No 325
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=40.81 E-value=3e+02 Score=25.57 Aligned_cols=132 Identities=11% Similarity=-0.001 Sum_probs=63.1
Q ss_pred EeeeecCChHHHHhccCC-CchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEEEeeccCCC
Q 001987 817 YNAELPISVKALMEMFDG-GKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGE 895 (985)
Q Consensus 817 ~~~~~p~~~~~~~~lf~~-s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~~~~ 895 (985)
.+.+++++++.+|+++.+ .++.. .. ..+....|.. .++..+...++. .+. ..+.++-..+ .+.+.
T Consensus 6 ~~~~v~a~~e~V~~~l~d~~~~~~-w~-----~~~~~~~~~~--~~~~~~~~~~~~---~g~--~~~~~~i~~~-~~~~~ 71 (139)
T PF10604_consen 6 VSIEVPAPPEAVWDLLSDPENWPR-WW-----PGVKSVELLS--GGGPGTERTVRV---AGR--GTVREEITEY-DPEPR 71 (139)
T ss_dssp EEEEESS-HHHHHHHHTTTTGGGG-TS-----TTEEEEEEEE--ECSTEEEEEEEE---CSC--SEEEEEEEEE-ETTTT
T ss_pred EEEEECCCHHHHHHHHhChhhhhh-hh-----hceEEEEEcc--ccccceeEEEEe---ccc--cceeEEEEEe-cCCCc
Confidence 355789999999998854 33332 11 1222222322 111122233432 222 2333331222 22355
Q ss_pred cEEEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHHHHH
Q 001987 896 GWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 975 (985)
Q Consensus 896 ~~vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~~~i 975 (985)
.+..... ..|+ +....+|.+.+.++ . |+++....+.. .+...+...-....++..+++.++.|++.+
T Consensus 72 ~~~~~~~----~~~~---~~~~~~~~~~~~~~--g-t~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 138 (139)
T PF10604_consen 72 RITWRFV----PSGF---TNGTGRWRFEPVGD--G-TRVTWTVEFEP---GLPGWLAGPLLRPAVKRIVREALENLKRAA 138 (139)
T ss_dssp EEEEEEE----SSSS---CEEEEEEEEEEETT--T-EEEEEEEEEEE---SCTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEE----ecce---eEEEEEEEEEEcCC--C-EEEEEEEEEEE---eccchhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 5555552 2333 34688999999887 3 88776666665 222222222233333444555555555543
No 326
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=40.06 E-value=2.8e+02 Score=28.95 Aligned_cols=78 Identities=9% Similarity=0.062 Sum_probs=56.0
Q ss_pred EEEEEEeccccCCCceeeeeEEEEe--eccCCCcEEEEEEEeeCCCCCCC---eEEEEEEEEEEecCCCCCccEEEEEEE
Q 001987 865 RHLSYRFNRHVSIFGGEVTCTQQKS--PLASGEGWIVNEVMSLHDVPFDD---HFRVHFRYEIEKSPLAHNACKCAIYIG 939 (985)
Q Consensus 865 R~~sy~~~~~~~~~~~~~~~~q~~~--~~~~~~~~vv~~~~~~~dVPygd---~F~v~~ry~i~~~~~~~~~~~l~v~~~ 939 (985)
=...|.++. +.|...+-.++++.- ..+.|.++++..++.-+++|.-. --...++|-|++.++ ++|+|.=-.+
T Consensus 96 dI~yY~~~~-~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~--g~s~ltyi~r 172 (205)
T cd08907 96 EVYHYVTDS-MAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGM--GRSRLTHICR 172 (205)
T ss_pred EEEEEEecC-CCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCC--CCeEEEEEEE
Confidence 344566543 455555555665543 35667788899999888887643 244678999999887 8999999999
Q ss_pred EEEEee
Q 001987 940 ISWLKS 945 (985)
Q Consensus 940 v~~~k~ 945 (985)
+.++++
T Consensus 173 vD~rG~ 178 (205)
T cd08907 173 ADLRGR 178 (205)
T ss_pred eCCCCC
Confidence 999774
No 327
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=38.77 E-value=1.1e+02 Score=38.32 Aligned_cols=116 Identities=19% Similarity=0.226 Sum_probs=64.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC----CE----EEEeeeccCCCCCeEeEEEEEEee-c--CCCCEEEEEEEe
Q 001987 537 VLTVALVEGVNLASSEMTGLSDPYVVFTCN----GK----TRTSSVQLQTCDPQWHDILEFDAM-E--EPPSVLDVEVFD 605 (985)
Q Consensus 537 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~----~~----~~kT~~~~~tlnP~Wne~f~f~v~-~--~~~~~L~v~V~D 605 (985)
-++|+++.+.++.. ....|-+|.|..+ .+ ...|.-+..+.+|.||+..+|++. . +....|.+.||-
T Consensus 344 ~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 344 PFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred ceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 46777777665432 2355777777653 33 244555666899999999999863 2 334588888876
Q ss_pred cCCCCCCCCccceEEEEeeccccCcccceEEEcc--ccccCCcceeEEEEEeee
Q 001987 606 FDGPFDQATSLGHAEINFLKHTSTELADMWVSLE--GKLAQSAQSKVHLRIFLE 657 (985)
Q Consensus 606 ~d~~~~~dd~lG~~~i~l~~l~~~~~~~~w~~L~--~~~~~~~~g~l~l~~~ls 657 (985)
--.. .+.. =-.+.++..+.......--|+.+. +..++-.+|+..|.+|..
T Consensus 421 v~~~-~~s~-~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~ 472 (1076)
T KOG0904|consen 421 VKAK-AKSK-KNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWPS 472 (1076)
T ss_pred eech-hccc-cccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecCC
Confidence 4210 0000 012223333333333334466553 233444578888888765
No 328
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=37.82 E-value=2.4e+02 Score=31.43 Aligned_cols=111 Identities=14% Similarity=0.230 Sum_probs=74.7
Q ss_pred CeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCCeEe--EEEEEEeecCCCCEEEEEEEecCCCCCC
Q 001987 535 GWVLTVALVEGVNLASSEMTGLSDPYVVFTCNGKTRTSSVQLQTCDPQWH--DILEFDAMEEPPSVLDVEVFDFDGPFDQ 612 (985)
Q Consensus 535 ~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~~~~tlnP~Wn--e~f~f~v~~~~~~~L~v~V~D~d~~~~~ 612 (985)
.-.|-|.+.+-.++.. ...-|+.+..|...++|..++-+..-.-+ +..... ...-...|++.||-... .+
T Consensus 57 kF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~Ik-IRQcDnTLkI~lfKKkL--vk 128 (508)
T PTZ00447 57 TFYLLVKINEIFNINK-----YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIK-IRQCDETLRVDLFTTKL--TK 128 (508)
T ss_pred eeeEEEEehhhhcccc-----ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeee-eeecCceEEEEEEeccc--cc
Confidence 3466777777666654 44689999999999988665443333333 444444 23345689999998774 67
Q ss_pred CCccceEEEEeec--cccCcccceEEEccccccCCcceeEEEEEe
Q 001987 613 ATSLGHAEINFLK--HTSTELADMWVSLEGKLAQSAQSKVHLRIF 655 (985)
Q Consensus 613 dd~lG~~~i~l~~--l~~~~~~~~w~~L~~~~~~~~~g~l~l~~~ 655 (985)
..-||.+.|++.. +...-+...||.+...+. ..+++.|++.
T Consensus 129 k~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq--~~cRIqLSFh 171 (508)
T PTZ00447 129 KVHIGQIKIDINASVISKSFPKNEWFVCFKDGQ--EICKVQMSFY 171 (508)
T ss_pred eeEEEEEEecccHHHHhccCCccceEEEecCCc--eeeeEEEEeh
Confidence 7889999999987 444556788999953222 3456777764
No 329
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=34.11 E-value=1.1e+02 Score=28.45 Aligned_cols=91 Identities=13% Similarity=0.174 Sum_probs=42.6
Q ss_pred EEEEEECC-EEEEeeeccCCCCCeEeEEEEEEeecCC-------CCEEEEEEEecCCCCCCCCccceEEEEeeccccCcc
Q 001987 560 YVVFTCNG-KTRTSSVQLQTCDPQWHDILEFDAMEEP-------PSVLDVEVFDFDGPFDQATSLGHAEINFLKHTSTEL 631 (985)
Q Consensus 560 yv~v~~~~-~~~kT~~~~~tlnP~Wne~f~f~v~~~~-------~~~L~v~V~D~d~~~~~dd~lG~~~i~l~~l~~~~~ 631 (985)
||.+.+-. ....|.++. +.||.+|-+-.|.|..+. ...+.|+++.--. .....+|.+.|++..+.....
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g--~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG--SDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S--S-EEEEEEEEE--SHHHH--S
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc--CCeEEEEEEEeechhhhcCCC
Confidence 34444433 345555554 999999988888864332 4578899887543 345789999999999764332
Q ss_pred --cceEEEccccccCCcceeEEEEE
Q 001987 632 --ADMWVSLEGKLAQSAQSKVHLRI 654 (985)
Q Consensus 632 --~~~w~~L~~~~~~~~~g~l~l~~ 654 (985)
...-..|.+..+. .-|.|...+
T Consensus 79 ~~i~~~~~l~g~~~~-~~g~l~y~~ 102 (107)
T PF11618_consen 79 ERIHGSATLVGVSGE-DFGTLEYWI 102 (107)
T ss_dssp --EEEEEEE-BSSS--TSEEEEEEE
T ss_pred ceEEEEEEEeccCCC-eEEEEEEEE
Confidence 3334455543333 334444444
No 330
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=33.59 E-value=63 Score=40.47 Aligned_cols=104 Identities=13% Similarity=0.220 Sum_probs=73.0
Q ss_pred CCcEEEEEECCeE-EeecCccCC-CCCeEeeEEEEEEecCCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCccccccC
Q 001987 19 KDSYVKVQIGKHK-SKSRILKNN-SNPVWNEEFVFRVHNIDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIAAED 96 (985)
Q Consensus 19 ~DPyv~v~l~~~~-~kT~v~~~t-~nP~wnE~f~f~v~~~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~ 96 (985)
+++|+.+.+.... .+|....+. .+|.|.+.|.... ......+.+.|-+.+ ..|....+|.+.+|...+..+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~-~h~~g~v~~~~~~~~-----~~G~s~~w~~v~~s~~~~~~~- 210 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGF-AHKAGYVIFRVKGAR-----VPGWSKRWGRVKISFLQYCSG- 210 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccc-cccccEEEEeecCCc-----cccceeEEEEeccchhhhhcc-
Confidence 4889999887544 777777776 7899999987766 566677888888777 245588999999999988875
Q ss_pred CCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEecC
Q 001987 97 NHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGKG 133 (985)
Q Consensus 97 ~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~~ 133 (985)
.....|+++... .+++ ....-.+.+.+.|.+..
T Consensus 211 --~~~~~~~~Il~~-d~~~-~~~~~~~~~~~~~~~~~ 243 (887)
T KOG1329|consen 211 --HRIGGWFPILDN-DGKP-HQKGSNESLRLGFTPME 243 (887)
T ss_pred --ccccceeeeecc-CCcc-ccCCcccceEEeeEeec
Confidence 346789987622 2221 12222456666666543
No 331
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=33.02 E-value=5.8e+02 Score=26.54 Aligned_cols=63 Identities=10% Similarity=0.037 Sum_probs=43.9
Q ss_pred CCCCeEEEEEE---EEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHH
Q 001987 909 PFDDHFRVHFR---YEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVE 972 (985)
Q Consensus 909 Pygd~F~v~~r---y~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~ 972 (985)
|--++.+++.. |.+..++.++++|++.-...+.+. ..+=+..|.+...+...+.+..|-..++
T Consensus 141 ~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk-G~iP~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 141 PQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLS-GYLPQTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred CCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccC-CCcCHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 45788888665 344556555689999999888884 3333778887777777777776666554
No 332
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=32.09 E-value=4.9e+02 Score=25.36 Aligned_cols=113 Identities=11% Similarity=0.013 Sum_probs=58.0
Q ss_pred EeeeecCChHHHHhccCCCc--hhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEEEeeccCC
Q 001987 817 YNAELPISVKALMEMFDGGK--LEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASG 894 (985)
Q Consensus 817 ~~~~~p~~~~~~~~lf~~s~--f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~~~ 894 (985)
.+.++++++++++.+|.+-. +...++..-....+..+ +...+..|.++|. .+.. .-+..++.....+
T Consensus 5 ~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG----~~~~GsvR~~~~~----~~~~--~~~~kE~l~~~D~- 73 (148)
T cd07816 5 HEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEG----DGGPGSIKLITFG----PGGK--VKYVKERIDAVDE- 73 (148)
T ss_pred EEEEecCCHHHHHHHHhcChhhccccccccccEEEEEec----CCCCceEEEEEEc----CCCc--ceEEEEEEEEEcc-
Confidence 35578999999999984332 44444432221122222 2344778999985 2222 1123334443333
Q ss_pred CcEEEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEe
Q 001987 895 EGWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLK 944 (985)
Q Consensus 895 ~~~vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k 944 (985)
....+.-++.-.|.|-..+-.-.....+.+... ++| .|.|.+.|..
T Consensus 74 ~~~~~~y~vveg~~~~~~~~~y~~t~~v~~~~~--~~t--~v~Wt~~ye~ 119 (148)
T cd07816 74 ENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGD--GGC--VVKWTIEYEK 119 (148)
T ss_pred cccEEEEEEEecccccCceEEEEEEEEEEECCC--CCE--EEEEEEEEEE
Confidence 233333344434554222223445566666645 676 4558888876
No 333
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=32.08 E-value=1.2e+02 Score=28.07 Aligned_cols=95 Identities=14% Similarity=0.221 Sum_probs=47.4
Q ss_pred EEEEEECCeE-EeecCccCCCCCeEeeEEEEEEe-c------CCCceEEEEEEecCCCCCCCCCCCCeeEEEEEeCcccc
Q 001987 22 YVKVQIGKHK-SKSRILKNNSNPVWNEEFVFRVH-N------IDDEELVVSVFQHNDDSGLFGSSGELMGRVRVPVSSIA 93 (985)
Q Consensus 22 yv~v~l~~~~-~kT~v~~~t~nP~wnE~f~f~v~-~------~~~~~L~~~V~D~d~~~~~~~~~d~~lG~~~i~L~~l~ 93 (985)
||.+.+.... +.|.++. ..+|.+|-+-.|.|. + .....+.++++..- ......+|.+.+++..+.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~------g~d~~tla~~~i~l~~ll 74 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL------GSDFETLAAGQISLRPLL 74 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-------SS-EEEEEEEEE--SHHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec------cCCeEEEEEEEeechhhh
Confidence 5556665544 5666665 799999999888875 1 44578899998866 124579999999999998
Q ss_pred ccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEE
Q 001987 94 AEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISL 129 (985)
Q Consensus 94 ~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~ 129 (985)
.... .....-..|.+.. +..-|.|...+++
T Consensus 75 ~~~~-~~i~~~~~l~g~~-----~~~~g~l~y~~rl 104 (107)
T PF11618_consen 75 ESNG-ERIHGSATLVGVS-----GEDFGTLEYWIRL 104 (107)
T ss_dssp H--S---EEEEEEE-BSS-----S-TSEEEEEEEEE
T ss_pred cCCC-ceEEEEEEEeccC-----CCeEEEEEEEEEe
Confidence 5422 1122234444222 2366777666654
No 334
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=30.59 E-value=4.8e+02 Score=24.82 Aligned_cols=22 Identities=5% Similarity=0.042 Sum_probs=17.6
Q ss_pred eEeeeecCChHHHHhccCCCch
Q 001987 816 VYNAELPISVKALMEMFDGGKL 837 (985)
Q Consensus 816 ~~~~~~p~~~~~~~~lf~~s~f 837 (985)
.+...|+++++.+|..+++...
T Consensus 3 ~~~r~i~ap~e~Vw~a~t~p~~ 24 (139)
T cd08894 3 VTTRVIDAPRDLVFAAWTDPEH 24 (139)
T ss_pred EEEEEeCCCHHHHHHHhCCHHH
Confidence 3567899999999999976553
No 335
>PF14470 bPH_3: Bacterial PH domain
Probab=29.86 E-value=2.2e+02 Score=25.16 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=35.0
Q ss_pred cceeEeeeeEeeeecc-ccCcceEEEEeccccccccccCCcccccCCCeEEEEE
Q 001987 679 KGRLFLSARIVGFYAN-LFGNKTKFFFLWEDIEDIQILSPSLATVGSPSLVIIL 731 (985)
Q Consensus 679 ~gr~y~s~~~~~f~sn-if~~~~~~~i~~~di~~i~~~~~~~~~~~~~~~~i~~ 731 (985)
.|-+.++..-+=|+.. .|+......+||++|.+++..... ....+.+..
T Consensus 23 ~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~----~~~~i~i~~ 72 (96)
T PF14470_consen 23 PGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGI----LGGKITIET 72 (96)
T ss_pred eeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccc----cccEEEEEE
Confidence 3667777777777765 477788899999999999987642 335555554
No 336
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=29.23 E-value=6.7e+02 Score=26.05 Aligned_cols=148 Identities=5% Similarity=-0.032 Sum_probs=80.0
Q ss_pred eee-cCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEEEee-ccCCCc
Q 001987 819 AEL-PISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSP-LASGEG 896 (985)
Q Consensus 819 ~~~-p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~-~~~~~~ 896 (985)
.++ +++++.|++++.|.++..+......-..+-. ......++.+-|....| -|..-+=...++.+. ..++..
T Consensus 51 ~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le-----~~~~~~~~i~y~~~~~P-~P~s~RD~V~~r~~~~~~~~~~ 124 (207)
T cd08911 51 GSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVD-----EDPETGSEIIYWEMQWP-KPFANRDYVYVRRYIIDEENKL 124 (207)
T ss_pred EEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEE-----ccCCCCCEEEEEEEECC-CCCCCccEEEEEEEEEcCCCCE
Confidence 345 8999999998877777766655543111111 00111234444433333 333333233333332 233334
Q ss_pred EEE-EEEEeeCCCCCC-CeEEE---EEEEEEEecCC-CCCccEEEEEEEEEEEeeeee-hhhhhhchHHHHHHHHHHHHH
Q 001987 897 WIV-NEVMSLHDVPFD-DHFRV---HFRYEIEKSPL-AHNACKCAIYIGISWLKSTKF-QQRITQNITEKFTHRLKEMIE 969 (985)
Q Consensus 897 ~vv-~~~~~~~dVPyg-d~F~v---~~ry~i~~~~~-~~~~~~l~v~~~v~~~k~t~~-K~~Ie~~~~~g~~~~~~~~~~ 969 (985)
++| ..++.-|.+|-. ++-+| ...|+|++..+ +++.|++......+-. .++ ...+..-+.++.-+.++.|-+
T Consensus 125 ~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg--G~IP~~lvN~~~~~~~~~~l~~l~~ 202 (207)
T cd08911 125 IVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG--VNIPSYITSWVAMSGMPDFLERLRN 202 (207)
T ss_pred EEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC--CccCHHHHHHHHHhhccHHHHHHHH
Confidence 333 344444488855 44444 57888887642 2367887655554332 333 666666777777777777777
Q ss_pred HHHHH
Q 001987 970 LVERE 974 (985)
Q Consensus 970 ~~~~~ 974 (985)
++.+|
T Consensus 203 a~~~y 207 (207)
T cd08911 203 AALKY 207 (207)
T ss_pred HHhcC
Confidence 77654
No 337
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=28.28 E-value=5.4e+02 Score=24.67 Aligned_cols=122 Identities=9% Similarity=-0.030 Sum_probs=59.3
Q ss_pred EeeeecCChHHHHhccCCCchhHHHHHHcCCcceEEcccccCCCCceeEEEEEEeccccCCCceeeeeEEEEeeccCCCc
Q 001987 817 YNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVTTPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGEG 896 (985)
Q Consensus 817 ~~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~~~~~ 896 (985)
..+.++++++++|+++.|-.-..++.. ++.+..... ........-...|+... ..|.....+.+ .......+.
T Consensus 5 ~~~~i~ap~e~Vw~~~tD~~~~~~w~~--~v~~~~~~~--~~~~~~~g~~~~~~~~~-~~~~~~~~~~~--v~~~~p~~~ 77 (146)
T cd07824 5 TVWRIPAPPEAVWDVLVDAESWPDWWP--GVERVVELE--PGDEAGIGARRRYTWRG-LLPYRLRFELR--VTRIEPLSL 77 (146)
T ss_pred EEEEecCCHHHHHHHHhChhhcchhhh--ceEEEEEcc--CCCCCCcceEEEEEEEe-cCCcEEEEEEE--EEeecCCcE
Confidence 466889999999999866553333333 333333321 00111111222233211 22322222221 111223444
Q ss_pred EEEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEe------eeeehhhhhhchH
Q 001987 897 WIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLK------STKFQQRITQNIT 957 (985)
Q Consensus 897 ~vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k------~t~~K~~Ie~~~~ 957 (985)
+.+.. . .+ |.-+.+|.|+..+. .|+|.....++... ..+++.++.+...
T Consensus 78 ~~~~~--~-g~------~~~~~~~~~~~~~~---gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~ 132 (146)
T cd07824 78 LEVRA--S-GD------LEGVGRWTLAPDGS---GTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHR 132 (146)
T ss_pred EEEEE--E-Ee------eeEEEEEEEEEcCC---CEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHH
Confidence 54432 1 12 44478899987544 68887777777643 3455555555443
No 338
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=28.06 E-value=6.3e+02 Score=25.35 Aligned_cols=80 Identities=6% Similarity=0.090 Sum_probs=52.2
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEE----------CCE-EEEeeecc-----CCCCCeEeEEEEEEeecCC---CCEE
Q 001987 539 TVALVEGVNLASSEMTGLSDPYVVFTC----------NGK-TRTSSVQL-----QTCDPQWHDILEFDAMEEP---PSVL 599 (985)
Q Consensus 539 ~V~v~~a~~L~~~d~~g~~DPyv~v~~----------~~~-~~kT~~~~-----~tlnP~Wne~f~f~v~~~~---~~~L 599 (985)
.=.|..|.+... .+-||+..+ +.. ...|.+.. +.-.=.||--|++...... =..|
T Consensus 5 ~G~I~~a~~f~~------~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 5 IGEIESAEGFEE------DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEECCCC------CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 335667765542 356777666 122 45555532 2345679987777753222 2489
Q ss_pred EEEEEecCCCCCCCCccceEEEEeec
Q 001987 600 DVEVFDFDGPFDQATSLGHAEINFLK 625 (985)
Q Consensus 600 ~v~V~D~d~~~~~dd~lG~~~i~l~~ 625 (985)
.|+||..|. ++++...|-..+.|..
T Consensus 79 ~l~V~~~D~-~gr~~~~GYG~~~lP~ 103 (168)
T PF07162_consen 79 VLQVYSLDS-WGRDRVEGYGFCHLPT 103 (168)
T ss_pred EEEEEEEcc-cCCeEEeEEeEEEeCC
Confidence 999999999 8999999887777654
No 339
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=26.93 E-value=5.1e+02 Score=23.93 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=32.7
Q ss_pred EEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHHHHH
Q 001987 914 FRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 975 (985)
Q Consensus 914 F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~~~i 975 (985)
|....+|.++..+. .|+|.....+.. ..+++ .++.-....++..+.++++.|++.+
T Consensus 83 ~~~~~~~~~~~~~~---~t~v~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 83 FPYEDTYTFEPVGG---GTRVRYTAELEP--GGFAR-LLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred cceEEEEEEEEcCC---ceEEEEEEEEcc--chhHH-HHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 44578899987655 688887776665 22222 2222233445556666666666554
No 340
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=26.87 E-value=6.3e+02 Score=25.33 Aligned_cols=95 Identities=16% Similarity=0.238 Sum_probs=61.8
Q ss_pred EEEEEEEeecCCCCCcEEEEEEC----------Ce-EEeecCccCC-----CCCeEeeEEEEEEe--cCC-CceEEEEEE
Q 001987 6 LYVYVLQGQDLLAKDSYVKVQIG----------KH-KSKSRILKNN-----SNPVWNEEFVFRVH--NID-DEELVVSVF 66 (985)
Q Consensus 6 L~V~V~~Ar~L~~~DPyv~v~l~----------~~-~~kT~v~~~t-----~nP~wnE~f~f~v~--~~~-~~~L~~~V~ 66 (985)
+.=.|..|.+...++-||+-.+. .. .+.|.+.+.+ ..-.||.-|.+.+. .+. -+.|.|+||
T Consensus 4 v~G~I~~a~~f~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~ 83 (168)
T PF07162_consen 4 VIGEIESAEGFEEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVY 83 (168)
T ss_pred EEEEEEEEECCCCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEE
Confidence 33457788888766779987773 23 5777776533 34678888877754 333 389999999
Q ss_pred ecCCCCCCCCCCCCeeEEEEEeCccccccCCCCCCCeEEE
Q 001987 67 QHNDDSGLFGSSGELMGRVRVPVSSIAAEDNHMLPPTWFS 106 (985)
Q Consensus 67 D~d~~~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~W~~ 106 (985)
..| ..+++...|-..+.|-.-... .......|.+
T Consensus 84 ~~D-----~~gr~~~~GYG~~~lP~~pG~-h~~~v~~wrP 117 (168)
T PF07162_consen 84 SLD-----SWGRDRVEGYGFCHLPTQPGR-HEVEVPTWRP 117 (168)
T ss_pred EEc-----ccCCeEEeEEeEEEeCCCCce-EEEEEEEEee
Confidence 999 368899998877655333221 1122355666
No 341
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=26.36 E-value=88 Score=26.83 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=32.6
Q ss_pred eCccccccCCCCCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 88 PVSSIAAEDNHMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 88 ~L~~l~~~~~~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
+|+.+-..+++....+|..|.+|.... ...+|.|.+++.....
T Consensus 2 DlgtVY~qP~H~~~~KW~~L~dP~D~~--~G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 2 DLGTVYNQPDHQFYRKWALLTDPDDTS--AGVKGYLKVDISVLGP 44 (72)
T ss_pred ceeeeecCCCCeeEeceEEecCCCCCc--cCCceEEEEEEEEEcC
Confidence 345555566777888999999777643 5679999999998765
No 342
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=26.00 E-value=2e+02 Score=24.94 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=23.1
Q ss_pred ecCCCCEEEEEEEecCCCCCCCCccceEEE
Q 001987 592 MEEPPSVLDVEVFDFDGPFDQATSLGHAEI 621 (985)
Q Consensus 592 ~~~~~~~L~v~V~D~d~~~~~dd~lG~~~i 621 (985)
...+....+|++||.|. +..||+|+.+.-
T Consensus 7 ~~~P~~~~~V~L~e~d~-~~~Ddll~~~~T 35 (80)
T PF01060_consen 7 GGKPAKNVKVKLWEDDY-FDPDDLLDETKT 35 (80)
T ss_pred CCccCCCCEEEEEECCC-CCCCceeEEEEE
Confidence 34555678899999997 789999988765
No 343
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=25.35 E-value=8.6e+02 Score=26.08 Aligned_cols=106 Identities=8% Similarity=0.071 Sum_probs=57.3
Q ss_pred eeeecCChHHHHhccCCCchhHHHHHHcC-CcceEEcccccCCCCceeEEEEEEe-cccc-CCCceeeeeEEEEe--ecc
Q 001987 818 NAELPISVKALMEMFDGGKLEHQVMEKSG-CHNYVTTPWDLVKPGVCERHLSYRF-NRHV-SIFGGEVTCTQQKS--PLA 892 (985)
Q Consensus 818 ~~~~p~~~~~~~~lf~~s~f~~~~~~~~~-~~~~~~~~W~~~~~~~~~R~~sy~~-~~~~-~~~~~~~~~~q~~~--~~~ 892 (985)
...++++++++++++.|.....+...... +..+..-. .+ .+ + |.. +.|. +|...+=-...... ...
T Consensus 86 e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id-----~~--~~-v-Y~v~~~p~~~pvs~RDfV~~~s~~~~~~ 156 (240)
T cd08913 86 EMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVD-----ED--DA-I-YHVTSPSLSGHGKPQDFVILASRRKPCD 156 (240)
T ss_pred EEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecC-----CC--cE-E-EEEecCCCCCCCCCCeEEEEEEEEeccC
Confidence 45779999999998855543333332222 11222111 11 24 3 543 3332 22222222222222 223
Q ss_pred CCCcE-EEEEEEeeCCCCCC-Ce---EEEEEEEEEEecCCCCCccEE
Q 001987 893 SGEGW-IVNEVMSLHDVPFD-DH---FRVHFRYEIEKSPLAHNACKC 934 (985)
Q Consensus 893 ~~~~~-vv~~~~~~~dVPyg-d~---F~v~~ry~i~~~~~~~~~~~l 934 (985)
++..| +...++..|++|=- +| +.....|+|.+.++ ++|+|
T Consensus 157 ~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~--~~t~v 201 (240)
T cd08913 157 NGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESD--QLTKV 201 (240)
T ss_pred CCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCC--CcEEE
Confidence 44445 66888899998833 33 34667899998877 88987
No 344
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=24.38 E-value=1.2e+02 Score=38.04 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=47.9
Q ss_pred CcEEEEEEEEeecCC---CCCcEEEEEEC----CeE----EeecCccCCCCCeEeeEEEEEEe---cCCCceEEEEEEec
Q 001987 3 STRLYVYVLQGQDLL---AKDSYVKVQIG----KHK----SKSRILKNNSNPVWNEEFVFRVH---NIDDEELVVSVFQH 68 (985)
Q Consensus 3 ~~~L~V~V~~Ar~L~---~~DPyv~v~l~----~~~----~kT~v~~~t~nP~wnE~f~f~v~---~~~~~~L~~~V~D~ 68 (985)
...++|+++++.++. ..|-+|.|..+ ++. ..|.-+..+.+|.||+...|+|. -|....|.|.||..
T Consensus 342 ~~~frI~l~~is~~n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred CCceEEEEeeccccCCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence 456788888887765 56677777764 332 33444444789999999999975 35667889999876
Q ss_pred C
Q 001987 69 N 69 (985)
Q Consensus 69 d 69 (985)
-
T Consensus 422 ~ 422 (1076)
T KOG0904|consen 422 K 422 (1076)
T ss_pred e
Confidence 4
No 345
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=23.43 E-value=6e+02 Score=23.59 Aligned_cols=58 Identities=7% Similarity=-0.008 Sum_probs=29.4
Q ss_pred EEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHHHHH
Q 001987 915 RVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 975 (985)
Q Consensus 915 ~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~~~i 975 (985)
..+..|.++..+. ++|++.......... -+...++-.-...-.+..++..++.|++.+
T Consensus 80 ~~~~~~~f~~~~~--~~T~vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~lk~~a 137 (139)
T cd07817 80 PNAGSVRFRPAPG--RGTRVTLTIEYEPPG-GAEGAAVAGLLGGEPERQLREDLRRFKQLV 137 (139)
T ss_pred CcceEEEEEECCC--CCeEEEEEEEEECCc-chhhhhHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 4567778887766 677777666555442 122212222222223444555555555543
No 346
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=23.28 E-value=8.3e+02 Score=25.15 Aligned_cols=75 Identities=7% Similarity=0.041 Sum_probs=48.4
Q ss_pred CCCcEEEEEEEeeCCCCC-CCeEEEE---EEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHH
Q 001987 893 SGEGWIVNEVMSLHDVPF-DDHFRVH---FRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMI 968 (985)
Q Consensus 893 ~~~~~vv~~~~~~~dVPy-gd~F~v~---~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~ 968 (985)
++..++.-.++.-|.+|= -++-+.+ ..|.|++.+.+++.|++.-...+...+ .+-+..+.+.+.+.+-+.++.|-
T Consensus 124 ~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG-~iP~~lvn~~~~~~~~~~~~~lr 202 (206)
T cd08867 124 DNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRG-MIPQSLVESAMPSNLVNFYTDLV 202 (206)
T ss_pred CCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCC-CCcHHHHHhhhhhhHHHHHHHHH
Confidence 343344446665566655 3555554 467788777656889999888888865 34477777777666665555543
No 347
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=23.15 E-value=6.1e+02 Score=23.53 Aligned_cols=131 Identities=12% Similarity=0.065 Sum_probs=61.3
Q ss_pred EeeeecCChHHHHhccCCCchhHHHHHHcCCcceEE-cccccCCCCceeEEEEEEeccccCCCceeeeeEEEEeeccCCC
Q 001987 817 YNAELPISVKALMEMFDGGKLEHQVMEKSGCHNYVT-TPWDLVKPGVCERHLSYRFNRHVSIFGGEVTCTQQKSPLASGE 895 (985)
Q Consensus 817 ~~~~~p~~~~~~~~lf~~s~f~~~~~~~~~~~~~~~-~~W~~~~~~~~~R~~sy~~~~~~~~~~~~~~~~q~~~~~~~~~ 895 (985)
.+.+++++++.+|+++.|-....+.+. ++..+.. +++. ..|. .|+...+. +. ....+ .......+
T Consensus 5 ~~~~i~Ap~~~Vw~~~~d~~~~~~w~~--~~~~~~~~~~~~--~~G~-----~~~~~~~~-~~--~~~~~--i~~~~p~~ 70 (138)
T cd08862 5 ATIVIDAPPERVWAVLTDVENWPAWTP--SVETVRLEGPPP--AVGS-----SFKMKPPG-LV--RSTFT--VTELRPGH 70 (138)
T ss_pred EEEEEcCCHHHHHHHHHhhhhcccccC--cceEEEEecCCC--CCCc-----EEEEecCC-CC--ceEEE--EEEecCCC
Confidence 456789999999998865432332322 1222221 1110 1122 34431121 11 12111 11222344
Q ss_pred cEEEEEEEeeCCCCCCCeEEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHHHHH
Q 001987 896 GWIVNEVMSLHDVPFDDHFRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 975 (985)
Q Consensus 896 ~~vv~~~~~~~dVPygd~F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~~~i 975 (985)
.|+.... ++.+....+|.++..+. ..|+|.+.. .|..- ...++..-....++..+...++.|++.+
T Consensus 71 ~~~~~~~--------~~~~~~~~~~~~~~~~~--~~t~l~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 136 (138)
T cd08862 71 SFTWTGP--------APGISAVHRHEFEAKPD--GGVRVTTSE--SLSGP--LAFLFGLFVGKKLRALLPEWLEGLKAAA 136 (138)
T ss_pred EEEEEec--------CCCEEEEEEEEEEEcCC--CcEEEEEEE--Eeecc--hHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 5554321 12366678899988775 688877554 55542 2211222333334444555555555443
No 348
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=22.06 E-value=2.6e+02 Score=32.23 Aligned_cols=112 Identities=20% Similarity=0.361 Sum_probs=63.7
Q ss_pred CCCcEEEEEECCeEEeecCccC--CCCCe---Ee-eEEEEEEe--------cC-----CCceEEEEEEecCCCC--CCCC
Q 001987 18 AKDSYVKVQIGKHKSKSRILKN--NSNPV---WN-EEFVFRVH--------NI-----DDEELVVSVFQHNDDS--GLFG 76 (985)
Q Consensus 18 ~~DPyv~v~l~~~~~kT~v~~~--t~nP~---wn-E~f~f~v~--------~~-----~~~~L~~~V~D~d~~~--~~~~ 76 (985)
.+.+||+|+|.+.-.+|..+.- ..++. -+ ---.|.+. .+ ....|+|.||--.... .+ .
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv-~ 113 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGV-G 113 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccc-c
Confidence 4677999999876555554432 11111 11 11233332 11 1257999999843110 10 1
Q ss_pred CCCCeeEEEEEeCccccccCC--CCCCCeEEEeecCCCCCCCCccccEEEEEEEEEec
Q 001987 77 SSGELMGRVRVPVSSIAAEDN--HMLPPTWFSLETPKTRKFTNKDCGKILLTISLNGK 132 (985)
Q Consensus 77 ~~d~~lG~~~i~L~~l~~~~~--~~~~~~W~~L~~~~~~~~~~~~~G~I~lsl~~~~~ 132 (985)
....+||.+.+||. +..... ...+..|..|.+...++. .....+|+|.+..++.
T Consensus 114 ~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~-~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 114 NSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSG-KSPSAELHLVVRAEPD 169 (460)
T ss_pred ccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCC-CCCcceEEEEEeccCC
Confidence 35679999999987 333322 235578999985443321 2356789999888764
No 349
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=21.18 E-value=6.6e+02 Score=23.20 Aligned_cols=56 Identities=7% Similarity=0.077 Sum_probs=36.7
Q ss_pred EEEEEEEEEEecCCCCCccEEEEEEEEEEEeeeeehhhhhhchHHHHHHHHHHHHHHHHHHH
Q 001987 914 FRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTKFQQRITQNITEKFTHRLKEMIELVEREI 975 (985)
Q Consensus 914 F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~~K~~Ie~~~~~g~~~~~~~~~~~~~~~i 975 (985)
+.....|.++..+. +.|++... ..|.+ +...........++...++++++.|++++
T Consensus 85 ~~~~~~~~~~~~~~--~~T~~~~~--~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 140 (141)
T cd07822 85 LDGEHSFELEPLGD--GGTRFVHR--ETFSG--LLAPLVLLGLGRDLRAGFEAMNEALKARA 140 (141)
T ss_pred eeEEEEEEEEEcCC--CcEEEEEe--eEEEE--EEhHHhhhhhHHHHhHhHHHHHHHHHHhh
Confidence 45677899998766 78997665 34433 34444555566666777777777777654
No 350
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=21.15 E-value=6e+02 Score=22.73 Aligned_cols=54 Identities=6% Similarity=0.051 Sum_probs=33.7
Q ss_pred EEEEEEEEEEecCCCCCccEEEEEEEEEEEeeee--ehhhhhhchHHHHHHHHHHHHHHHHH
Q 001987 914 FRVHFRYEIEKSPLAHNACKCAIYIGISWLKSTK--FQQRITQNITEKFTHRLKEMIELVER 973 (985)
Q Consensus 914 F~v~~ry~i~~~~~~~~~~~l~v~~~v~~~k~t~--~K~~Ie~~~~~g~~~~~~~~~~~~~~ 973 (985)
...+..|.++.... .+|+|.+...+......+ +..++++... ..+.+++..+++
T Consensus 84 ~~~~~~~~~~~~~~--~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 139 (141)
T cd07812 84 VDGTGEWRLEPEGD--GGTRVTYTVEYDPPGPLLKVFALLLAGALK----RELAALLRALKA 139 (141)
T ss_pred cceeEEEEEEECCC--CcEEEEEEEEEecCCcchhhhhHHHHHHHH----hHHHHHHHHHHh
Confidence 35677788887766 689988888877777663 4444444443 444444444443
No 351
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=20.11 E-value=17 Score=43.10 Aligned_cols=51 Identities=12% Similarity=0.151 Sum_probs=39.4
Q ss_pred CCCcEEEEEECCeEEeecCccCCCCCeEeeEEEEEEe-cCCCceEEEEEEecC
Q 001987 18 AKDSYVKVQIGKHKSKSRILKNNSNPVWNEEFVFRVH-NIDDEELVVSVFQHN 69 (985)
Q Consensus 18 ~~DPyv~v~l~~~~~kT~v~~~t~nP~wnE~f~f~v~-~~~~~~L~~~V~D~d 69 (985)
..+|++...++.+..||+....+.+|+|||. .+++. ......|...|.+++
T Consensus 304 ~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~ 355 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYC 355 (975)
T ss_pred CCCchheeecchhhhhhhhhccccccccccc-ccccccchhhHHHhhhccccc
Confidence 6899999999999999999999999999997 55543 233445555555555
Done!